Query 044733
Match_columns 99
No_of_seqs 91 out of 93
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 10:35:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ljo_A Non-specific lipid-tran 18.5 79 0.0027 20.1 2.5 20 71-90 17-36 (93)
2 2ebo_A Ebola virus envelope gl 18.1 31 0.0011 21.9 0.4 9 77-85 47-55 (74)
3 1bwo_A NS-LTP1, nonspecific li 17.8 92 0.0031 19.5 2.6 33 53-90 3-35 (90)
4 1n89_A Lipid transfer protein; 16.7 90 0.0031 18.5 2.3 17 76-93 18-34 (67)
5 1l6h_A LTP2, non-specific lipi 16.2 79 0.0027 18.9 1.9 17 76-93 19-35 (69)
6 2alg_A Non-specific lipid tran 14.5 89 0.003 19.6 1.9 33 53-90 4-36 (92)
7 1ebo_A Ebola virus envelope pr 14.1 44 0.0015 23.2 0.4 8 77-84 84-91 (131)
8 1siy_A LTP 1, NS-LTP1, nonspec 13.5 1.2E+02 0.0042 18.8 2.4 30 55-89 5-34 (91)
9 1afh_A Maize nonspecific lipid 11.9 1.4E+02 0.0048 18.7 2.3 33 53-90 4-37 (93)
10 2rkn_A DIR1 protein, AT5G48485 10.9 55 0.0019 19.7 0.0 17 77-93 26-42 (77)
No 1
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=18.47 E-value=79 Score=20.12 Aligned_cols=20 Identities=15% Similarity=0.483 Sum_probs=15.1
Q ss_pred HHhCccccChhhhHHHHHhh
Q 044733 71 FLNSQANIRPDYCRAIDIIT 90 (99)
Q Consensus 71 f~nG~~~igp~CCkAi~~i~ 90 (99)
|+.|.....+.||..++.+.
T Consensus 17 Yv~g~~~p~~~CC~gv~~l~ 36 (93)
T 2ljo_A 17 YLTGGPGPSPQCCGGVKKLL 36 (93)
T ss_dssp HHTTSSCCCHHHHHHHHHHH
T ss_pred HHcCCCCCCCchhhHHHHHH
Confidence 34555578899999998874
No 2
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=18.12 E-value=31 Score=21.85 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=7.3
Q ss_pred ccChhhhHH
Q 044733 77 NIRPDYCRA 85 (99)
Q Consensus 77 ~igp~CCkA 85 (99)
-+||+||-.
T Consensus 47 ilgpdc~i~ 55 (74)
T 2ebo_A 47 ILGPDCAIE 55 (74)
T ss_dssp HHGGGGGCC
T ss_pred ecCCccccC
Confidence 599999954
No 3
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=17.85 E-value=92 Score=19.47 Aligned_cols=33 Identities=9% Similarity=0.269 Sum_probs=21.4
Q ss_pred HhhhhhcccchHHHHHHHHHhCccccChhhhHHHHHhh
Q 044733 53 CWNTLMELKSCSNEIVVFFLNSQANIRPDYCRAIDIIT 90 (99)
Q Consensus 53 Cwssl~~v~gC~~EI~~sf~nG~~~igp~CCkAi~~i~ 90 (99)
|=+.+.++..|..-+ ..|. ...++||.+++.+.
T Consensus 3 C~~v~~~L~pCl~y~----~~~~-~Ps~~CC~~lk~l~ 35 (90)
T 1bwo_A 3 CGHVDSLVRPCLSYV----QGGP-GPSGQCCDGVKNLH 35 (90)
T ss_dssp HHHHHHHHGGGHHHH----TTCS-CCCHHHHHHHHHHH
T ss_pred HHHHHHhhcccHHHH----cCCC-CCCHHHhHHHHHHH
Confidence 445555666665544 3333 37788999999875
No 4
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=16.66 E-value=90 Score=18.47 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=12.8
Q ss_pred cccChhhhHHHHHhhhcc
Q 044733 76 ANIRPDYCRAIDIITRNC 93 (99)
Q Consensus 76 ~~igp~CCkAi~~i~~~C 93 (99)
....++||.+++.. ..|
T Consensus 18 ~~Ps~~CC~~lk~~-~~C 34 (67)
T 1n89_A 18 AKPSGECCGNLRAQ-QGC 34 (67)
T ss_dssp CCCCHHHHHHHHHH-SSH
T ss_pred CCCCHHHHHhhCCC-CCC
Confidence 36788999999875 444
No 5
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=16.23 E-value=79 Score=18.85 Aligned_cols=17 Identities=18% Similarity=0.491 Sum_probs=12.8
Q ss_pred cccChhhhHHHHHhhhcc
Q 044733 76 ANIRPDYCRAIDIITRNC 93 (99)
Q Consensus 76 ~~igp~CCkAi~~i~~~C 93 (99)
....++||.+++.. ..|
T Consensus 19 ~~Ps~~CC~~lk~~-~~C 35 (69)
T 1l6h_A 19 ARPTAACCSSLRAQ-QGC 35 (69)
T ss_dssp CSTTHHHHHHHHHH-HHH
T ss_pred CCCCHHHHHhhCCC-CCC
Confidence 35788999999875 444
No 6
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=14.54 E-value=89 Score=19.57 Aligned_cols=33 Identities=18% Similarity=0.417 Sum_probs=22.3
Q ss_pred HhhhhhcccchHHHHHHHHHhCccccChhhhHHHHHhh
Q 044733 53 CWNTLMELKSCSNEIVVFFLNSQANIRPDYCRAIDIIT 90 (99)
Q Consensus 53 Cwssl~~v~gC~~EI~~sf~nG~~~igp~CCkAi~~i~ 90 (99)
|=..+.++..|..-+ ..|. ...++||.+++.+.
T Consensus 4 C~~v~~~L~pCl~y~----~~~~-~p~~~CC~~lk~l~ 36 (92)
T 2alg_A 4 CGQVSSSLAPCIPYV----RGGG-AVPPACCNGIRNVN 36 (92)
T ss_dssp HHHHHHHHGGGHHHH----HHCS-CCCHHHHHHHHHHH
T ss_pred hHHHHHhccCcHHHH----cCCC-CCCHHHHHHHHHHH
Confidence 555556666776544 2333 57789999999875
No 7
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=14.10 E-value=44 Score=23.16 Aligned_cols=8 Identities=25% Similarity=0.260 Sum_probs=6.8
Q ss_pred ccChhhhH
Q 044733 77 NIRPDYCR 84 (99)
Q Consensus 77 ~igp~CCk 84 (99)
-+||+||-
T Consensus 84 iLGPdCcI 91 (131)
T 1ebo_A 84 ILGPDCRI 91 (131)
T ss_dssp HHGGGGGC
T ss_pred ecCCcccc
Confidence 59999994
No 8
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=13.51 E-value=1.2e+02 Score=18.84 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=18.0
Q ss_pred hhhhcccchHHHHHHHHHhCccccChhhhHHHHHh
Q 044733 55 NTLMELKSCSNEIVVFFLNSQANIRPDYCRAIDII 89 (99)
Q Consensus 55 ssl~~v~gC~~EI~~sf~nG~~~igp~CCkAi~~i 89 (99)
+.+.++..|..-+ ..|. .-.++||.+++.+
T Consensus 5 ~v~~~L~pCl~yv----~~~~-~Ps~~CC~~lk~l 34 (91)
T 1siy_A 5 QVQGNLAQCIGFL----QKGG-VVPPSCCTGVKNI 34 (91)
T ss_dssp TTHHHHHHHHHHH----TSCS-CCCHHHHHHHHHH
T ss_pred HHHHhccCcHHHH----hCCC-CCcHHHHHHHHHH
Confidence 3344444554433 3333 3778899999987
No 9
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=11.90 E-value=1.4e+02 Score=18.66 Aligned_cols=33 Identities=12% Similarity=0.335 Sum_probs=20.8
Q ss_pred HhhhhhcccchHHHHHHHHHhCcc-ccChhhhHHHHHhh
Q 044733 53 CWNTLMELKSCSNEIVVFFLNSQA-NIRPDYCRAIDIIT 90 (99)
Q Consensus 53 Cwssl~~v~gC~~EI~~sf~nG~~-~igp~CCkAi~~i~ 90 (99)
|=+.+..+..|..-+ +|.. .-.++||.+++.+.
T Consensus 4 C~~v~~~L~pCl~y~-----~~~~~~Ps~~CC~gv~~l~ 37 (93)
T 1afh_A 4 CGQVASAIAPCISYA-----RGQGSGPSAGCCSGVRSLN 37 (93)
T ss_dssp SHHHHHHHGGGHHHH-----TTSCCSCCHHHHHHHHHHH
T ss_pred hHHHHHhccCcHHHH-----cCCCCCChHHHHHHHHHHH
Confidence 444555566665433 3443 46678999999884
No 10
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=10.91 E-value=55 Score=19.75 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=12.8
Q ss_pred ccChhhhHHHHHhhhcc
Q 044733 77 NIRPDYCRAIDIITRNC 93 (99)
Q Consensus 77 ~igp~CCkAi~~i~~~C 93 (99)
.-.++||.+++..+..|
T Consensus 26 ~Ps~~CC~~lk~~~~~C 42 (77)
T 2rkn_A 26 SPSQPCCTALQHADFAC 42 (77)
T ss_dssp CCCHHHHHHHTTCCHHH
T ss_pred CCCHHHHHHHHhcCcCC
Confidence 66778999998755555
Done!