Citrus Sinensis ID: 044734

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
VSGDRFLARDLTIENKAGPEKYQAVALRVNADFAALFRCSFSGYQDTLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVK
cccccEEEEccEEEEccccccccEEEEEEcccEEEEEccEEEEEccEEEEccccEEEEccEEEEEccEEEcccEEEEEccEEEEEcccccccEEEEEcccccccccEEEEEEccEEEEcccEEEcccccc
ccccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEcccccccccccc
vsgdrflardltienkagpeKYQAVALRVNADFAALFRcsfsgyqdtLYAHSFRQFYRecdvygtiDYIFGNAAVVLQACNivsrlplpgqfTVITAQlkddpnentgisiqncsilatEDLYANSASVK
vsgdrflardltienkagpekyQAVALRVNADFAALFRCSFSGYQDTLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQlkddpnentgisiqncsilatEDLYANSASVK
VSGDRFLARDLTIENKAGPEKYQAVALRVNADFAALFRCSFSGYQDTLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVK
***********TI****GPEKYQAVALRVNADFAALFRCSFSGYQDTLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLY*******
VSGDRFLARDLTIENKAGPEKYQAVALRVNADFAALFRCSFSGYQDTLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASV*
VSGDRFLARDLTIENKAGPEKYQAVALRVNADFAALFRCSFSGYQDTLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVK
***DRFLARDLTIENKAGPEKYQAVALRVNADFAALFRCSFSGYQDTLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLY*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
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VSGDRFLARDLTIENKAGPEKYQAVALRVNADFAALFRCSFSGYQDTLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query130 2.2.26 [Sep-21-2011]
O48711547 Probable pectinesterase/p yes no 1.0 0.237 0.761 4e-56
Q9SRX4579 Probable pectinesterase/p no no 1.0 0.224 0.607 2e-44
Q94CB1 619 Probable pectinesterase/p no no 0.984 0.206 0.617 5e-43
Q9FF77 624 Probable pectinesterase/p no no 0.992 0.206 0.612 7e-43
O04887510 Pectinesterase 2 OS=Citru no no 0.992 0.252 0.607 1e-42
Q9FK05 587 Probable pectinesterase/p no no 0.976 0.216 0.598 1e-42
Q8RXK7573 Probable pectinesterase/p no no 1.0 0.226 0.576 1e-42
P85076321 Pectinesterase OS=Actinid N/A no 1.0 0.404 0.615 4e-42
Q9M9W7543 Putative pectinesterase/p no no 0.946 0.226 0.609 4e-42
Q9M3B0 598 Probable pectinesterase/p no no 0.992 0.215 0.596 1e-41
>sp|O48711|PME12_ARATH Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1 Back     alignment and function desciption
 Score =  216 bits (549), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 99/130 (76%), Positives = 113/130 (86%)

Query: 1   VSGDRFLARDLTIENKAGPEKYQAVALRVNADFAALFRCSFSGYQDTLYAHSFRQFYREC 60
           VSG+ FLARD+ I N AGPEK+QAVALRVNADF AL+RC   GYQDTLY HSFRQFYREC
Sbjct: 320 VSGEGFLARDIMITNTAGPEKHQAVALRVNADFVALYRCVIDGYQDTLYTHSFRQFYREC 379

Query: 61  DVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATE 120
           D+YGTIDYIFGNAAVV Q CNIVS+LP+PGQFTVITAQ +D  +E+TGIS+QNCSILA+E
Sbjct: 380 DIYGTIDYIFGNAAVVFQGCNIVSKLPMPGQFTVITAQSRDTQDEDTGISMQNCSILASE 439

Query: 121 DLYANSASVK 130
           DL+ +S  VK
Sbjct: 440 DLFNSSNKVK 449
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9SRX4|PME7_ARATH Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1 Back     alignment and function description
>sp|Q94CB1|PME25_ARATH Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1 Back     alignment and function description
>sp|Q9FF77|PME47_ARATH Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1 Back     alignment and function description
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FK05|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1 Back     alignment and function description
>sp|Q8RXK7|PME41_ARATH Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2 Back     alignment and function description
>sp|P85076|PME_ACTDE Pectinesterase OS=Actinidia deliciosa PE=1 SV=1 Back     alignment and function description
>sp|Q9M9W7|PME22_ARATH Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1 Back     alignment and function description
>sp|Q9M3B0|PME34_ARATH Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query130
255550283 543 Pectinesterase PPE8B precursor, putative 1.0 0.239 0.784 3e-57
357450209 534 hypothetical protein MTR_2g044810 [Medic 1.0 0.243 0.769 6e-57
356564704 527 PREDICTED: LOW QUALITY PROTEIN: probable 1.0 0.246 0.769 1e-55
224069284 541 predicted protein [Populus trichocarpa] 1.0 0.240 0.784 5e-55
297822157 542 pectinesterase family protein [Arabidops 1.0 0.239 0.753 7e-55
226490392 543 pectin methylesterase 1 [Prunus persica] 1.0 0.239 0.746 9e-55
357479297 521 Pectinesterase [Medicago truncatula] gi| 1.0 0.249 0.753 9e-55
356556434 540 PREDICTED: probable pectinesterase/pecti 1.0 0.240 0.761 2e-54
15225308 547 pectinesterase 12 [Arabidopsis thaliana] 1.0 0.237 0.761 3e-54
359484243 1456 PREDICTED: uncharacterized protein LOC10 1.0 0.089 0.730 1e-53
>gi|255550283|ref|XP_002516192.1| Pectinesterase PPE8B precursor, putative [Ricinus communis] gi|223544678|gb|EEF46194.1| Pectinesterase PPE8B precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 102/130 (78%), Positives = 120/130 (92%)

Query: 1   VSGDRFLARDLTIENKAGPEKYQAVALRVNADFAALFRCSFSGYQDTLYAHSFRQFYREC 60
           VSG+ FLARD+TIEN AG +K+QAVALR+NAD AA++RC+ +GYQDTLY HSFRQFYREC
Sbjct: 316 VSGEGFLARDITIENTAGAQKHQAVALRINADLAAMYRCTINGYQDTLYVHSFRQFYREC 375

Query: 61  DVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATE 120
           D+YGTIDYIFGNAAVV QACNIVS++PLPGQFTVITAQ ++ P E+TGISIQNCSILATE
Sbjct: 376 DIYGTIDYIFGNAAVVFQACNIVSKMPLPGQFTVITAQSREIPEEDTGISIQNCSILATE 435

Query: 121 DLYANSASVK 130
           DLY+N++SVK
Sbjct: 436 DLYSNASSVK 445

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357450209|ref|XP_003595381.1| hypothetical protein MTR_2g044810 [Medicago truncatula] gi|124360335|gb|ABN08348.1| Pectinesterase; Pectinesterase inhibitor [Medicago truncatula] gi|355484429|gb|AES65632.1| hypothetical protein MTR_2g044810 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356564704|ref|XP_003550589.1| PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 12-like [Glycine max] Back     alignment and taxonomy information
>gi|224069284|ref|XP_002326320.1| predicted protein [Populus trichocarpa] gi|222833513|gb|EEE71990.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297822157|ref|XP_002878961.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] gi|297324800|gb|EFH55220.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|226490392|dbj|BAH56489.1| pectin methylesterase 1 [Prunus persica] Back     alignment and taxonomy information
>gi|357479297|ref|XP_003609934.1| Pectinesterase [Medicago truncatula] gi|355510989|gb|AES92131.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356556434|ref|XP_003546531.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 12-like [Glycine max] Back     alignment and taxonomy information
>gi|15225308|ref|NP_180212.1| pectinesterase 12 [Arabidopsis thaliana] gi|75318311|sp|O48711.1|PME12_ARATH RecName: Full=Probable pectinesterase/pectinesterase inhibitor 12; Includes: RecName: Full=Pectinesterase inhibitor 12; AltName: Full=Pectin methylesterase inhibitor 12; Includes: RecName: Full=Pectinesterase 12; Short=PE 12; AltName: Full=Pectin methylesterase 12; Short=AtPME12; Flags: Precursor gi|2739369|gb|AAC14493.1| putative pectinesterase [Arabidopsis thaliana] gi|18176445|gb|AAL60045.1| putative pectinesterase [Arabidopsis thaliana] gi|21689727|gb|AAM67485.1| putative pectinesterase [Arabidopsis thaliana] gi|330252745|gb|AEC07839.1| pectinesterase 12 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359484243|ref|XP_002273499.2| PREDICTED: uncharacterized protein LOC100257766 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query130
TAIR|locus:2066195547 AT2G26440 [Arabidopsis thalian 1.0 0.237 0.761 8.3e-51
TAIR|locus:2024750579 AT1G02810 [Arabidopsis thalian 1.0 0.224 0.607 7.5e-41
TAIR|locus:2175334 624 AT5G04970 [Arabidopsis thalian 0.984 0.205 0.617 3.7e-39
TAIR|locus:2103212 619 AT3G10720 [Arabidopsis thalian 0.984 0.206 0.617 4.5e-39
TAIR|locus:2133224573 ATPMEPCRB [Arabidopsis thalian 1.0 0.226 0.576 4.8e-39
TAIR|locus:2154277 587 PMEPCRF "pectin methylesterase 0.976 0.216 0.598 9.9e-39
TAIR|locus:2082951 598 AT3G49220 [Arabidopsis thalian 0.992 0.215 0.596 2.5e-38
TAIR|locus:2078047543 AT3G05620 [Arabidopsis thalian 0.946 0.226 0.609 1.9e-37
TAIR|locus:2062013560 AT2G47550 [Arabidopsis thalian 1.0 0.232 0.561 2.7e-36
TAIR|locus:2101836519 AT3G60730 [Arabidopsis thalian 0.953 0.238 0.596 2.7e-36
TAIR|locus:2066195 AT2G26440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 99/130 (76%), Positives = 113/130 (86%)

Query:     1 VSGDRFLARDLTIENKAGPEKYQAVALRVNADFAALFRCSFSGYQDTLYAHSFRQFYREC 60
             VSG+ FLARD+ I N AGPEK+QAVALRVNADF AL+RC   GYQDTLY HSFRQFYREC
Sbjct:   320 VSGEGFLARDIMITNTAGPEKHQAVALRVNADFVALYRCVIDGYQDTLYTHSFRQFYREC 379

Query:    61 DVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATE 120
             D+YGTIDYIFGNAAVV Q CNIVS+LP+PGQFTVITAQ +D  +E+TGIS+QNCSILA+E
Sbjct:   380 DIYGTIDYIFGNAAVVFQGCNIVSKLPMPGQFTVITAQSRDTQDEDTGISMQNCSILASE 439

Query:   121 DLYANSASVK 130
             DL+ +S  VK
Sbjct:   440 DLFNSSNKVK 449
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2024750 AT1G02810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175334 AT5G04970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103212 AT3G10720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133224 ATPMEPCRB [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154277 PMEPCRF "pectin methylesterase PCR fragment F" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078047 AT3G05620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062013 AT2G47550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101836 AT3G60730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O48711PME12_ARATH3, ., 1, ., 1, ., 1, 10.76151.00.2376yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00280096
pectinesterase family protein (EC-3.1.1.11) (541 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query130
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 2e-82
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 7e-81
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-65
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-62
PLN02314586 PLN02314, PLN02314, pectinesterase 7e-60
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-58
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 4e-58
PLN02484 587 PLN02484, PLN02484, probable pectinesterase/pectin 4e-58
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-57
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 6e-56
PLN02698 497 PLN02698, PLN02698, Probable pectinesterase/pectin 4e-53
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 9e-53
PLN02201 520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-51
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-49
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-48
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-46
PLN02995 539 PLN02995, PLN02995, Probable pectinesterase/pectin 2e-46
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-45
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 4e-45
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 2e-42
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 8e-42
PLN02197588 PLN02197, PLN02197, pectinesterase 6e-34
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 2e-27
PLN02773317 PLN02773, PLN02773, pectinesterase 3e-26
PLN02432293 PLN02432, PLN02432, putative pectinesterase 4e-23
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 9e-22
PLN02671359 PLN02671, PLN02671, pectinesterase 2e-21
PLN02634359 PLN02634, PLN02634, probable pectinesterase 2e-21
PLN02304379 PLN02304, PLN02304, probable pectinesterase 2e-21
PLN02497331 PLN02497, PLN02497, probable pectinesterase 4e-17
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 3e-15
PLN02176340 PLN02176, PLN02176, putative pectinesterase 1e-13
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 4e-12
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 1e-08
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  250 bits (640), Expect = 2e-82
 Identities = 106/130 (81%), Positives = 120/130 (92%)

Query: 1   VSGDRFLARDLTIENKAGPEKYQAVALRVNADFAALFRCSFSGYQDTLYAHSFRQFYREC 60
           VSG+ FLARD+TIEN AGPEK+QAVALRVNAD  AL+RC+ +GYQDTLY HSFRQFYREC
Sbjct: 314 VSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHSFRQFYREC 373

Query: 61  DVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATE 120
           D+YGTIDYIFGNAAVV QACNIVS++P+PGQFTVITAQ +D P+E+TGISIQNCSILATE
Sbjct: 374 DIYGTIDYIFGNAAVVFQACNIVSKMPMPGQFTVITAQSRDTPDEDTGISIQNCSILATE 433

Query: 121 DLYANSASVK 130
           DLY+NS SVK
Sbjct: 434 DLYSNSNSVK 443

Length = 541
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 130
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02698 497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02497331 probable pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02682369 pectinesterase family protein 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02432293 putative pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02304379 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02671359 pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.73
PLN02773317 pectinesterase 96.24
PLN02480343 Probable pectinesterase 96.21
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 96.17
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.3
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.18
PLN02497331 probable pectinesterase 95.15
PLN02671359 pectinesterase 94.66
PLN02432293 putative pectinesterase 94.4
PLN02176340 putative pectinesterase 94.34
PLN02468565 putative pectinesterase/pectinesterase inhibitor 94.26
PLN02634359 probable pectinesterase 94.11
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 93.93
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 93.7
PLN02916502 pectinesterase family protein 93.52
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 93.51
PLN02416541 probable pectinesterase/pectinesterase inhibitor 93.16
PLN02304379 probable pectinesterase 93.05
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 92.94
PLN02682369 pectinesterase family protein 92.89
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 92.84
PLN02170529 probable pectinesterase/pectinesterase inhibitor 92.65
PLN02488509 probable pectinesterase/pectinesterase inhibitor 92.64
PLN02665366 pectinesterase family protein 92.63
PLN02484587 probable pectinesterase/pectinesterase inhibitor 92.52
PLN02313587 Pectinesterase/pectinesterase inhibitor 92.36
PLN02197588 pectinesterase 92.25
PRK10531422 acyl-CoA thioesterase; Provisional 91.25
PLN02506537 putative pectinesterase/pectinesterase inhibitor 91.07
PLN02201520 probable pectinesterase/pectinesterase inhibitor 90.8
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 90.45
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 90.25
PLN02301548 pectinesterase/pectinesterase inhibitor 89.41
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 89.27
smart00656190 Amb_all Amb_all domain. 88.88
PLN02314586 pectinesterase 88.31
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 88.24
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 87.54
PLN02188404 polygalacturonase/glycoside hydrolase family prote 84.34
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 84.05
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 83.74
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 82.94
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=1.1e-49  Score=342.02  Aligned_cols=128  Identities=51%  Similarity=0.866  Sum_probs=121.8

Q ss_pred             CccCcEEEEcceEEeCCCCCCCceEEEEEeCCeeEEEeeeEEeccceEeecCCcEEeEccEEccccceEecceeEEEEEe
Q 044734            1 VSGDRFLARDLTIENKAGPEKYQAVALRVNADFAALFRCSFSGYQDTLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQAC   80 (130)
Q Consensus         1 v~a~~f~~~niti~Nt~~~~~~QAvAl~~~~d~~~~~~c~~~g~QDTL~~~~gr~yf~~c~I~G~vDFIfG~g~a~f~~c   80 (130)
                      |+|++|+++||||+|++||.++||||||+.+||++||+|+|+|||||||++.+||||++|+|+|+||||||+|+++||+|
T Consensus       281 v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG~a~avFq~C  360 (509)
T PLN02488        281 SNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICGNAAAVFQFC  360 (509)
T ss_pred             EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEecceEEEEEcc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCeeEEEeccCCCCCCCeeEEEECCEEeecCCccccccc
Q 044734           81 NIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSAS  128 (130)
Q Consensus        81 ~i~~~~~~~~~~~~ItA~~r~~~~~~~Gfvf~~c~it~~~~~~~~~~~  128 (130)
                      +|+++++.+++.++||||+|+++.+++||||++|+|++++++.|.+.+
T Consensus       361 ~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~~~~~~~~~  408 (509)
T PLN02488        361 QIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASSDLDPVKAT  408 (509)
T ss_pred             EEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCCcccccccc
Confidence            999998877778999999999888999999999999999988776543

>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query130
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 7e-36
1xg2_A 317 Crystal Structure Of The Complex Between Pectin Met 8e-35
2ntb_A 342 Crystal Structure Of Pectin Methylesterase In Compl 4e-10
1qjv_A 342 Pectin Methylesterase Pema From Erwinia Chrysanthem 5e-10
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 1e-09
2nsp_A 342 Crystal Structure Of Pectin Methylesterase D178a Mu 4e-09
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  145 bits (365), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 69/120 (57%), Positives = 86/120 (71%)
Query: 3   GDRFLARDLTIENKAGPEKYQAVALRVNADFAALFRCSFSGYQDTLYAHSFRQFYRECDV 62
           G  FLARD+T +N AG  K+QAVALRV +D +A +RC    YQD+LY HS RQF+  C +
Sbjct: 93  GAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFI 152
Query: 63  YGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDL 122
            GT+D+IFGNAAVVLQ C+I +R P  GQ  ++TAQ + DPN+NTGI IQ   I AT DL
Sbjct: 153 AGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDL 212
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query130
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 2e-61
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-60
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 3e-52
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-49
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 2e-49
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  189 bits (482), Expect = 2e-61
 Identities = 68/130 (52%), Positives = 86/130 (66%)

Query: 1   VSGDRFLARDLTIENKAGPEKYQAVALRVNADFAALFRCSFSGYQDTLYAHSFRQFYREC 60
             G  F+ +D+ I+N AGP K QAVALRV AD + + RC    YQDTLYAHS RQFYR+ 
Sbjct: 87  AVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDS 146

Query: 61  DVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATE 120
            V GT+D+IFGNAAVV Q C +V+R P   Q  ++TAQ + DPN+ TG SIQ C+I+A+ 
Sbjct: 147 YVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASS 206

Query: 121 DLYANSASVK 130
           DL        
Sbjct: 207 DLEPVLKEFP 216
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query130
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.39
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.26
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.91
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.8
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.75
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.15
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 94.28
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 93.62
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 91.04
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 90.49
2qy1_A 330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 90.38
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 89.12
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 88.69
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 88.12
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 88.08
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 87.54
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 86.93
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 85.16
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 84.61
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 83.69
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 82.37
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 82.34
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 81.56
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 81.54
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=1.7e-45  Score=300.78  Aligned_cols=126  Identities=54%  Similarity=0.832  Sum_probs=119.7

Q ss_pred             CccCcEEEEcceEEeCCCCCCCceEEEEEeCCeeEEEeeeEEeccceEeecCCcEEeEccEEccccceEecceeEEEEEe
Q 044734            1 VSGDRFLARDLTIENKAGPEKYQAVALRVNADFAALFRCSFSGYQDTLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQAC   80 (130)
Q Consensus         1 v~a~~f~~~niti~Nt~~~~~~QAvAl~~~~d~~~~~~c~~~g~QDTL~~~~gr~yf~~c~I~G~vDFIfG~g~a~f~~c   80 (130)
                      |.|++|+++||||+|++++.++|||||++.+|++.|++|+|+|+|||||++.+||||++|+|+|+||||||.|++|||+|
T Consensus        87 v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~avf~~c  166 (317)
T 1xg2_A           87 AVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKC  166 (317)
T ss_dssp             ECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCEEEEESC
T ss_pred             EECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCceEEEeee
Confidence            57899999999999999988899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCeeEEEeccCCCCCCCeeEEEECCEEeecCCccccc
Q 044734           81 NIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANS  126 (130)
Q Consensus        81 ~i~~~~~~~~~~~~ItA~~r~~~~~~~Gfvf~~c~it~~~~~~~~~  126 (130)
                      +|+++++.+++.++||||+|+++.+++||||++|+|++++++.|++
T Consensus       167 ~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~  212 (317)
T 1xg2_A          167 QLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVL  212 (317)
T ss_dssp             EEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGT
T ss_pred             EEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccc
Confidence            9999987666789999999999999999999999999999877654
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 130
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 2e-50
d1qjva_ 342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 1e-36
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  160 bits (407), Expect = 2e-50
 Identities = 70/129 (54%), Positives = 88/129 (68%)

Query: 2   SGDRFLARDLTIENKAGPEKYQAVALRVNADFAALFRCSFSGYQDTLYAHSFRQFYRECD 61
            G  FLARD+T +N AG  K+QAVALRV +D +A +RC    YQD+LY HS RQF+  C 
Sbjct: 92  VGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCF 151

Query: 62  VYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATED 121
           + GT+D+IFGNAAVVLQ C+I +R P  GQ  ++TAQ + DPN+NTGI IQ   I AT D
Sbjct: 152 IAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSD 211

Query: 122 LYANSASVK 130
           L    +S  
Sbjct: 212 LQPVQSSFP 220
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query130
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_ 342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.93
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.59
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 88.41
d1czfa_ 335 Polygalacturonase {Fungus (Aspergillus niger), end 88.39
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 87.82
d1ogmx2 373 Dextranase, catalytic domain {Penicillium miniolut 86.26
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 86.05
d1o88a_ 353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 85.51
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 85.29
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 85.1
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 83.21
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 81.01
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=7.1e-49  Score=319.41  Aligned_cols=127  Identities=54%  Similarity=0.841  Sum_probs=120.6

Q ss_pred             CccCcEEEEcceEEeCCCCCCCceEEEEEeCCeeEEEeeeEEeccceEeecCCcEEeEccEEccccceEecceeEEEEEe
Q 044734            1 VSGDRFLARDLTIENKAGPEKYQAVALRVNADFAALFRCSFSGYQDTLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQAC   80 (130)
Q Consensus         1 v~a~~f~~~niti~Nt~~~~~~QAvAl~~~~d~~~~~~c~~~g~QDTL~~~~gr~yf~~c~I~G~vDFIfG~g~a~f~~c   80 (130)
                      |+|++|+++||||+|++++.++|||||++.+||++||+|+|+|||||||++.|||||++|+|||+||||||+|+++||+|
T Consensus        91 v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~~~a~f~~c  170 (319)
T d1gq8a_          91 AVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDC  170 (319)
T ss_dssp             ECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEESCEEEEESC
T ss_pred             eecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEecCceeEeecc
Confidence            56899999999999999998899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCeeEEEeccCCCCCCCeeEEEECCEEeecCCcccccc
Q 044734           81 NIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSA  127 (130)
Q Consensus        81 ~i~~~~~~~~~~~~ItA~~r~~~~~~~Gfvf~~c~it~~~~~~~~~~  127 (130)
                      +|+++.+..++.++||||+|+++.+++||||++|+|++++++.+...
T Consensus       171 ~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~  217 (319)
T d1gq8a_         171 DIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQS  217 (319)
T ss_dssp             EEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGG
T ss_pred             eeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCcccccc
Confidence            99999887677899999999999999999999999999998776643
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure