BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044735
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZUX4|UMP2_ARATH Uncharacterized protein At2g27730, mitochondrial OS=Arabidopsis
thaliana GN=At2g27730 PE=1 SV=1
Length = 113
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/119 (57%), Positives = 90/119 (75%), Gaps = 11/119 (9%)
Query: 70 MASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSG 129
MA+R A+R SRRFSS GKVLSEEE+AAENV+IKK+EQEKL+K+AR+GP + ++G
Sbjct: 1 MATRNALRIVSRRFSS-GKVLSEEERAAENVFIKKMEQEKLQKLARQGPGEQ-----AAG 54
Query: 130 SGAEAKPTSA-AGASTE---KVSTDQYRNYAVIAGIITGVSALGWYLKSSRKKE-QVQD 183
S +EAK A A AS E KVS D+ RNYAV+AG++ V ++GWYLK+ KK+ +VQ+
Sbjct: 55 SASEAKVAGATASASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKKQPEVQE 113
>sp|P80730|NUO7_SOLTU NADH-ubiquinone oxidoreductase 16 kDa subunit (Fragment) OS=Solanum
tuberosum PE=1 SV=1
Length = 22
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 86 SGKVLSEEEKAAENVYIKKVE 106
SGKVLSEEEKAA NVYIKK+E
Sbjct: 2 SGKVLSEEEKAAANVYIKKME 22
>sp|Q9TU34|ITPR1_BOVIN Inositol 1,4,5-trisphosphate receptor type 1 OS=Bos taurus GN=ITPR1
PE=1 SV=1
Length = 2709
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 108 EKLEKMARKGPKPEETPAASSGSGAEAKPTSAAGASTEKVSTDQYRNYAVIAGIITGVSA 167
EK E KG P+E +SG K S + ST Y NY V+ I+ +S
Sbjct: 1127 EKSELWVYKGQGPDEAMDGASGENEHKKTEEGNNKSQQHESTSSY-NYRVVKEILIRLSK 1185
Query: 168 L----GWYLKSSRKKEQ 180
L ++ SRK++Q
Sbjct: 1186 LCVQESASVRKSRKQQQ 1202
>sp|Q14643|ITPR1_HUMAN Inositol 1,4,5-trisphosphate receptor type 1 OS=Homo sapiens GN=ITPR1
PE=1 SV=2
Length = 2758
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 108 EKLEKMARKGPKPEETPAASSGSGAEAKPTSAAGASTEKVSTDQYRNYAVIAGIITGVSA 167
EK E KG P+ET +SG K + ST Y NY V+ I+ +S
Sbjct: 1137 EKSELWVYKGQGPDETMDGASGENEHKKTEEGNNKPQKHESTSSY-NYRVVKEILIRLSK 1195
Query: 168 L----GWYLKSSRKKEQ 180
L ++ SRK++Q
Sbjct: 1196 LCVQESASVRKSRKQQQ 1212
>sp|A0L4P8|SYC_MAGSM Cysteine--tRNA ligase OS=Magnetococcus sp. (strain MC-1) GN=cysS
PE=3 SV=1
Length = 490
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 55 EKLPPCIQKGFMTTIMASRIA----------VRNFSRRFSSSGKVLSEEEKAAENVYIKK 104
E LP +Q + T+M +A V F+ SGKVL E+E A V +
Sbjct: 124 EHLPEMMQ--MIGTLMDKGVAYASGGDVYYAVERFANYGQLSGKVLDEQEAGAR-VEVDS 180
Query: 105 VEQEKLEKMARKGPKPEETPAASSGSGA 132
+Q ++ + KG KPEE P S GA
Sbjct: 181 NKQNPMDFVLWKGAKPEE-PQWDSPWGA 207
>sp|Q8TF30|WHAMM_HUMAN WASP homolog-associated protein with actin, membranes and
microtubules OS=Homo sapiens GN=WHAMM PE=1 SV=2
Length = 809
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 93 EEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAKPTSAAG 141
E K A + + +Q +L + AR GP+PE P A+ + A SAAG
Sbjct: 38 EGKFAVTCHDRTAQQRRLREGARLGPEPEPKPEAAVSPSSWAGLLSAAG 86
>sp|O32212|NHAK_BACSU Sodium, potassium, lithium and rubidium/H(+) antiporter OS=Bacillus
subtilis (strain 168) GN=nhaK PE=1 SV=1
Length = 670
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 81 RRFSSSGKVLSEEEKA-AENVYIKKVEQEKLEKMARKGPKPEET 123
++++SS ++ E K A+ V K EQE L KM +G PEET
Sbjct: 470 QQYTSSNRIKKHERKVRAQGV---KAEQEALMKMLERGDIPEET 510
>sp|B2RGR5|HTPG_PORG3 Chaperone protein HtpG OS=Porphyromonas gingivalis (strain ATCC
33277 / DSM 20709 / JCM 12257) GN=htpG PE=3 SV=1
Length = 684
Score = 30.4 bits (67), Expect = 6.2, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 88 KVLSEEEKAAENVYIK---KVEQEKLEKMA----RKGPKPEETPAASSGSGAEAKPTSAA 140
KVLS E+++ E + K+ + K E+ KG KPEE P A+ EAK +A
Sbjct: 576 KVLSGEKESVEPSLTELRAKIAELKTEEAKLLDEEKGKKPEEIPVATK----EAKENNAV 631
Query: 141 -GASTEKVSTDQYRNYA 156
A TE DQ YA
Sbjct: 632 EQAKTEGSINDQLTKYA 648
>sp|P11881|ITPR1_MOUSE Inositol 1,4,5-trisphosphate receptor type 1 OS=Mus musculus GN=Itpr1
PE=1 SV=2
Length = 2749
Score = 30.0 bits (66), Expect = 8.0, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 108 EKLEKMARKGPKPEETPAASSGSGAEAKPTSAAGASTEKVSTDQYRNYAVIAGIITGVSA 167
EK E KG P+E +SG K + ST Y NY V+ I+ +S
Sbjct: 1127 EKSELWVYKGQGPDEPMDGASGENEHKKTEEGTSKPLKHESTSSY-NYRVVKEILIRLSK 1185
Query: 168 L----GWYLKSSRKKEQ 180
L ++ SRK++Q
Sbjct: 1186 LCVQESASVRKSRKQQQ 1202
>sp|A1TPK8|SYC_ACIAC Cysteine--tRNA ligase OS=Acidovorax citrulli (strain AAC00-1)
GN=cysS PE=3 SV=1
Length = 459
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 75 AVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGS 130
AVR F SGK L +E +A E V ++ +Q+ L+ + K KP E P A S
Sbjct: 146 AVRRFEGYGKLSGKSL-DELRAGERVAVQDDKQDPLDFVLWKAAKPGEPPEAKWDS 200
>sp|P29994|ITPR1_RAT Inositol 1,4,5-trisphosphate receptor type 1 OS=Rattus norvegicus
GN=Itpr1 PE=1 SV=2
Length = 2750
Score = 30.0 bits (66), Expect = 8.2, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 108 EKLEKMARKGPKPEETPAASSGSGAEAKPTSAAGASTEKVSTDQYRNYAVIAGIITGVSA 167
EK E KG P+E +SG K + ST Y NY V+ I+ +S
Sbjct: 1127 EKSELWVYKGQGPDEPMDGASGENEHKKTEEGTSKPLKHESTSSY-NYRVVKEILIRLSK 1185
Query: 168 L----GWYLKSSRKKEQ 180
L ++ SRK++Q
Sbjct: 1186 LCVQESASVRKSRKQQQ 1202
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,045,855
Number of Sequences: 539616
Number of extensions: 2509948
Number of successful extensions: 10754
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 10679
Number of HSP's gapped (non-prelim): 135
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)