Query 044735
Match_columns 183
No_of_seqs 47 out of 49
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 06:14:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04568 IATP: Mitochondrial A 98.4 1.3E-07 2.7E-12 71.8 2.9 34 86-119 50-83 (100)
2 PF01102 Glycophorin_A: Glycop 79.6 0.35 7.7E-06 38.0 -1.2 27 154-180 70-96 (122)
3 PF14283 DUF4366: Domain of un 78.2 0.66 1.4E-05 39.1 -0.1 26 155-180 163-188 (218)
4 PF14960 ATP_synth_reg: ATP sy 74.1 1.2 2.6E-05 30.9 0.3 25 152-178 25-49 (49)
5 TIGR01167 LPXTG_anchor LPXTG-m 70.6 1.5 3.3E-05 25.8 0.2 26 151-177 8-33 (34)
6 PF04478 Mid2: Mid2 like cell 63.3 10 0.00022 31.5 3.7 33 148-180 43-81 (154)
7 PF00746 Gram_pos_anchor: Gram 56.1 3.7 8.1E-05 25.1 0.0 25 150-174 14-38 (39)
8 PF09813 Coiled-coil_56: Coile 56.0 7.6 0.00017 30.4 1.7 55 86-177 20-74 (100)
9 PF02318 FYVE_2: FYVE-type zin 53.3 15 0.00033 27.4 2.9 28 90-117 3-36 (118)
10 PTZ00382 Variant-specific surf 44.6 13 0.00028 27.6 1.3 17 161-177 79-95 (96)
11 cd01144 BtuF Cobalamin binding 43.5 19 0.00041 27.8 2.1 29 87-118 102-130 (245)
12 PF11661 DUF2986: Protein of u 39.5 14 0.0003 25.4 0.7 15 100-114 29-43 (44)
13 PF10805 DUF2730: Protein of u 37.8 8.1 0.00018 28.8 -0.7 23 153-175 7-29 (106)
14 TIGR03659 IsdE heme ABC transp 36.3 30 0.00064 28.1 2.3 29 87-118 135-163 (289)
15 PF06543 Lac_bphage_repr: Lact 36.3 20 0.00043 25.2 1.1 17 81-97 22-38 (49)
16 TIGR03868 F420-O_ABCperi propo 35.4 31 0.00068 27.4 2.3 27 87-116 138-164 (287)
17 PF13807 GNVR: G-rich domain o 35.2 60 0.0013 22.4 3.4 67 93-172 12-78 (82)
18 KOG4782 Predicted membrane pro 34.2 17 0.00037 28.9 0.6 26 151-176 56-81 (108)
19 PTZ00234 variable surface prot 34.2 20 0.00044 33.2 1.2 39 140-178 352-390 (433)
20 PF08315 cwf18: cwf18 pre-mRNA 33.4 60 0.0013 25.1 3.4 10 107-116 11-20 (129)
21 PF04147 Nop14: Nop14-like fam 32.9 36 0.00078 33.5 2.6 29 85-113 266-295 (840)
22 PF15506 OCC1: OCC1 family 31.9 31 0.00067 25.2 1.6 9 148-156 31-39 (62)
23 PF14147 Spore_YhaL: Sporulati 30.4 34 0.00074 24.2 1.5 12 99-110 39-50 (52)
24 PF02731 SKIP_SNW: SKIP/SNW do 29.3 30 0.00065 28.7 1.3 33 44-76 50-93 (158)
25 cd01148 TroA_a Metal binding p 28.1 55 0.0012 26.0 2.5 30 87-119 136-165 (284)
26 PRK09534 btuF corrinoid ABC tr 26.9 48 0.001 28.6 2.1 30 87-119 164-193 (359)
27 KOG2147 Nucleolar protein invo 26.3 71 0.0015 32.6 3.5 39 64-116 249-287 (823)
28 PF12971 NAGLU_N: Alpha-N-acet 26.0 23 0.00051 25.3 0.1 14 161-174 51-64 (86)
29 cd00636 TroA-like Helical back 23.5 67 0.0014 21.2 1.9 20 87-108 108-127 (148)
30 PF02843 GARS_C: Phosphoribosy 23.1 42 0.0009 24.4 0.9 21 81-101 45-71 (93)
31 PF11427 HTH_Tnp_Tc3_1: Tc3 tr 22.8 62 0.0013 22.1 1.7 17 87-103 2-18 (50)
32 PF04536 TPM: TLP18.3, Psb32 a 22.7 87 0.0019 21.7 2.5 20 89-108 1-20 (119)
33 KOG2441 mRNA splicing factor/p 22.4 1.1E+02 0.0024 29.7 3.7 22 55-76 241-266 (506)
34 COG0614 FepB ABC-type Fe3+-hyd 22.0 65 0.0014 25.4 1.9 31 87-120 159-189 (319)
35 cd01139 TroA_f Periplasmic bin 21.8 55 0.0012 26.9 1.5 28 87-117 142-169 (342)
36 PRK03379 vitamin B12-transport 21.8 89 0.0019 25.2 2.7 28 87-117 117-144 (260)
37 PF04534 Herpes_UL56: Herpesvi 21.3 98 0.0021 26.9 2.9 49 36-84 40-90 (198)
No 1
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=98.44 E-value=1.3e-07 Score=71.83 Aligned_cols=34 Identities=32% Similarity=0.519 Sum_probs=31.5
Q ss_pred CCcccCHHHHhhhhhhHHHHHHHHHHHHHhcCCC
Q 044735 86 SGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPK 119 (183)
Q Consensus 86 gGkvlsEeErAaENvYIkK~E~EkLEKl~rk~~k 119 (183)
.|+.|++.|+|.||.||+++|+|+|++|+++..+
T Consensus 50 ag~~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~ 83 (100)
T PF04568_consen 50 AGGAFGKREAAQEEQYFRKKEKEQLKKLKEKLKE 83 (100)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCccchHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999988765
No 2
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=79.56 E-value=0.35 Score=37.97 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=18.2
Q ss_pred ceeeehhHHHHhhhhhheeecCCcccc
Q 044735 154 NYAVIAGIITGVSALGWYLKSSRKKEQ 180 (183)
Q Consensus 154 NYAV~AGtVav~~algWYlks~~KK~E 180 (183)
-++|+||+|+++..|.|.++...||+.
T Consensus 70 i~gv~aGvIg~Illi~y~irR~~Kk~~ 96 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCIRRLRKKSS 96 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 578999999988766666666777764
No 3
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=78.24 E-value=0.66 Score=39.14 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=19.6
Q ss_pred eeeehhHHHHhhhhhheeecCCcccc
Q 044735 155 YAVIAGIITGVSALGWYLKSSRKKEQ 180 (183)
Q Consensus 155 YAV~AGtVav~~algWYlks~~KK~E 180 (183)
|++|+-++.+.||.+||||-..||++
T Consensus 163 ll~lllv~l~gGGa~yYfK~~K~K~~ 188 (218)
T PF14283_consen 163 LLLLLLVALIGGGAYYYFKFYKPKQE 188 (218)
T ss_pred HHHHHHHHHhhcceEEEEEEeccccc
Confidence 55555566666788999999888876
No 4
>PF14960 ATP_synth_reg: ATP synthase regulation
Probab=74.11 E-value=1.2 Score=30.92 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.4
Q ss_pred ccceeeehhHHHHhhhhhheeecCCcc
Q 044735 152 YRNYAVIAGIITGVSALGWYLKSSRKK 178 (183)
Q Consensus 152 ~rNYAV~AGtVav~~algWYlks~~KK 178 (183)
-+|.++ .|.|.++.+.||++-++||
T Consensus 25 R~N~~~--ATya~i~li~~~~k~~~kk 49 (49)
T PF14960_consen 25 RANVAK--ATYASIGLIILYFKLRRKK 49 (49)
T ss_pred hhhhHH--HHHHHHHHHHHHHhcccCC
Confidence 568887 8999999999999999987
No 5
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=70.55 E-value=1.5 Score=25.82 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=16.1
Q ss_pred cccceeeehhHHHHhhhhhheeecCCc
Q 044735 151 QYRNYAVIAGIITGVSALGWYLKSSRK 177 (183)
Q Consensus 151 k~rNYAV~AGtVav~~algWYlks~~K 177 (183)
+..+..+++|+ +++++.+|++..+.|
T Consensus 8 ~~~~~~~~~G~-~l~~~~~~~~~~rk~ 33 (34)
T TIGR01167 8 SGNSLLLLLGL-LLLGLGGLLLRKRKK 33 (34)
T ss_pred cccHHHHHHHH-HHHHHHHHHheeccc
Confidence 34456677788 555556666665544
No 6
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=63.35 E-value=10 Score=31.47 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=20.0
Q ss_pred ccccccce--eeehhH----HHHhhhhhheeecCCcccc
Q 044735 148 STDQYRNY--AVIAGI----ITGVSALGWYLKSSRKKEQ 180 (183)
Q Consensus 148 STDk~rNY--AV~AGt----Vav~~algWYlks~~KK~E 180 (183)
-++|+||. +|+.|+ +.++.+|.||+.-++||..
T Consensus 43 lS~knknIVIGvVVGVGg~ill~il~lvf~~c~r~kktd 81 (154)
T PF04478_consen 43 LSSKNKNIVIGVVVGVGGPILLGILALVFIFCIRRKKTD 81 (154)
T ss_pred CCcCCccEEEEEEecccHHHHHHHHHhheeEEEecccCc
Confidence 35778875 444443 3334466777877777765
No 7
>PF00746 Gram_pos_anchor: Gram positive anchor; InterPro: IPR019948 Viruses, parasites and bacteria are covered in protein and sugar molecules that help them gain entry into a host by counteracting the host's defences. One such molecule is the M protein produced by certain streptococcal bacteria. M proteins embody a motif that is now known to be shared by many Gram-positive bacterial surface proteins. The motif includes a conserved hexapeptide, which precedes a hydrophobic C-terminal membrane anchor, which itself precedes a cluster of basic residues [, ]. This structure is represented in the following schematic representation: +--------------------------------------------+-+--------+-+ | Variable length extracellular domain |H| Anchor |B| +--------------------------------------------+-+--------+-+ 'H': conserved hexapeptide. 'B': cluster of basic residues. It has been proposed that this hexapeptide sequence is responsible for a post- translational modification necessary for the proper anchoring of the proteins which bear it, to the cell wall.; PDB: 2XTL_B 3QDH_A 2Y1V_C 2X9X_A 3RPK_A 2X9W_A 2X9Y_A.
Probab=56.10 E-value=3.7 Score=25.15 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=0.0
Q ss_pred ccccceeeehhHHHHhhhhhheeec
Q 044735 150 DQYRNYAVIAGIITGVSALGWYLKS 174 (183)
Q Consensus 150 Dk~rNYAV~AGtVav~~algWYlks 174 (183)
|...++.+++|++.+++++.+|++.
T Consensus 14 ~~~~~~~~~~G~l~~~~~~~~~~kr 38 (39)
T PF00746_consen 14 ENSNSILTILGALLLLGGGLLLVKR 38 (39)
T ss_dssp -------------------------
T ss_pred cccCHHHHHHHHHHHHHHHHHheec
Confidence 4445667777877777777777664
No 8
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=56.01 E-value=7.6 Score=30.40 Aligned_cols=55 Identities=24% Similarity=0.192 Sum_probs=39.2
Q ss_pred CCcccCHHHHhhhhhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccccccceeeehhHHHHh
Q 044735 86 SGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAKPTSAAGASTEKVSTDQYRNYAVIAGIITGV 165 (183)
Q Consensus 86 gGkvlsEeErAaENvYIkK~E~EkLEKl~rk~~k~~e~~s~S~~a~~dvk~~~g~~tst~~VSTDk~rNYAV~AGtVav~ 165 (183)
....|+. +.+-|++.+|.+++++ +.+. =..||-....|+.+++
T Consensus 20 ~~e~L~~----~q~~fmr~vE~~~~kr-~~~~--------------------------------~R~rN~~Tgl~L~~~v 62 (100)
T PF09813_consen 20 SKEKLSP----AQLQFMRQVELQQLKR-KLQR--------------------------------RRRRNLLTGLALGAFV 62 (100)
T ss_pred ccccCCH----HHHHHHHHHHHHHHHH-HHHH--------------------------------HhhhhHHHHHHHHHHH
Confidence 3455554 4678999999999988 2211 0257888888899999
Q ss_pred hhhhheeecCCc
Q 044735 166 SALGWYLKSSRK 177 (183)
Q Consensus 166 ~algWYlks~~K 177 (183)
.|++||-...-|
T Consensus 63 ~gIY~YTi~sV~ 74 (100)
T PF09813_consen 63 VGIYAYTIYSVK 74 (100)
T ss_pred HHHHhheeeeec
Confidence 999999765433
No 9
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=53.30 E-value=15 Score=27.36 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=18.3
Q ss_pred cCHHHHhh-h-----hhhHHHHHHHHHHHHHhcC
Q 044735 90 LSEEEKAA-E-----NVYIKKVEQEKLEKMARKG 117 (183)
Q Consensus 90 lsEeErAa-E-----NvYIkK~E~EkLEKl~rk~ 117 (183)
|+||||.. . .-.++++|++++.+|+.+.
T Consensus 3 Lt~eE~~~I~~Vl~R~~~l~~~E~~Ri~kLk~~L 36 (118)
T PF02318_consen 3 LTEEEREIILQVLQRDEELRKKEEERIRKLKQEL 36 (118)
T ss_dssp S-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 66777653 2 2346788888888888777
No 10
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=44.62 E-value=13 Score=27.63 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=9.7
Q ss_pred HHHHhhhhhheeecCCc
Q 044735 161 IITGVSALGWYLKSSRK 177 (183)
Q Consensus 161 tVav~~algWYlks~~K 177 (183)
+.++++.|.|+|.-+.|
T Consensus 79 v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 79 VGGLVGFLCWWFVCRGK 95 (96)
T ss_pred HHHHHHHHhheeEEeec
Confidence 33455566677766544
No 11
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=43.46 E-value=19 Score=27.76 Aligned_cols=29 Identities=14% Similarity=0.335 Sum_probs=22.3
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhcCC
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARKGP 118 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk~~ 118 (183)
|++|+.||+|.+ ++++||+ ++++++.+..
T Consensus 102 g~~~g~~~~a~~--~~~~~~~-~~~~~~~~~~ 130 (245)
T cd01144 102 GTLAGRPARAEE--LAEALRR-RLAALRKQYA 130 (245)
T ss_pred HHHhCChhHHHH--HHHHHHH-HHHHHHHHhc
Confidence 899999999998 8999976 4555555543
No 12
>PF11661 DUF2986: Protein of unknown function (DUF2986); InterPro: IPR021677 This family of proteins has no known function.
Probab=39.54 E-value=14 Score=25.43 Aligned_cols=15 Identities=47% Similarity=0.574 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHH
Q 044735 100 VYIKKVEQEKLEKMA 114 (183)
Q Consensus 100 vYIkK~E~EkLEKl~ 114 (183)
=||-|-|||+|+..+
T Consensus 29 kYISKAeR~kl~aea 43 (44)
T PF11661_consen 29 KYISKAERAKLAAEA 43 (44)
T ss_pred CccCHHHHHHHHHcc
Confidence 599999999998643
No 13
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=37.83 E-value=8.1 Score=28.83 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=18.5
Q ss_pred cceeeehhHHHHhhhhhheeecC
Q 044735 153 RNYAVIAGIITGVSALGWYLKSS 175 (183)
Q Consensus 153 rNYAV~AGtVav~~algWYlks~ 175 (183)
+|+.++.-+++++++++|++.++
T Consensus 7 ~~w~ii~a~~~~~~~~~~~~l~~ 29 (106)
T PF10805_consen 7 KNWGIIWAVFGIAGGIFWLWLRR 29 (106)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHH
Confidence 58888888888888888886654
No 14
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=36.30 E-value=30 Score=28.12 Aligned_cols=29 Identities=28% Similarity=0.451 Sum_probs=21.6
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhcCC
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARKGP 118 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk~~ 118 (183)
|++|+.|++|.+ +|++|| +++++++++..
T Consensus 135 g~~~G~~~~A~~--li~~~~-~~v~~i~~~~~ 163 (289)
T TIGR03659 135 GEKYGREEQAEK--LVKEIN-EKEAEVKKKVK 163 (289)
T ss_pred HHHhCCHHHHHH--HHHHHH-HHHHHHHHHhc
Confidence 899999999977 677777 45666666643
No 15
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=36.28 E-value=20 Score=25.24 Aligned_cols=17 Identities=35% Similarity=0.474 Sum_probs=15.1
Q ss_pred ccccCCCcccCHHHHhh
Q 044735 81 RRFSSSGKVLSEEEKAA 97 (183)
Q Consensus 81 R~fSsgGkvlsEeErAa 97 (183)
+..|.|||.|+||-+.+
T Consensus 22 ~wvSf~GrPltdevK~a 38 (49)
T PF06543_consen 22 KWVSFDGRPLTDEVKEA 38 (49)
T ss_pred HheeeCCeeCCHHHHHH
Confidence 77899999999998865
No 16
>TIGR03868 F420-O_ABCperi proposed F420-0 ABC transporter, periplasmic F420-0 binding protein. This small clade of ABC-type transporter periplasmic binding protein components is found as a three gene cassette along with a permease (TIGR03869) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this periplasmic binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=35.42 E-value=31 Score=27.40 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=21.0
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhc
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARK 116 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk 116 (183)
|++|+.||+|++ ||+.|+ ++|++++.+
T Consensus 138 g~~~g~e~~A~~--~i~~~~-~~l~~i~~~ 164 (287)
T TIGR03868 138 GTIFDVPDAAAS--LVAEQR-AQLAAIEPD 164 (287)
T ss_pred HHHhCCHHHHHH--HHHHHH-HHHHHHhhc
Confidence 899999999987 778886 456666544
No 17
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=35.18 E-value=60 Score=22.45 Aligned_cols=67 Identities=10% Similarity=0.105 Sum_probs=34.2
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccccccceeeehhHHHHhhhhhhee
Q 044735 93 EEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAKPTSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYL 172 (183)
Q Consensus 93 eErAaENvYIkK~E~EkLEKl~rk~~k~~e~~s~S~~a~~dvk~~~g~~tst~~VSTDk~rNYAV~AGtVav~~algWYl 172 (183)
+-..++++|-.=+++-+-.++.+.... +....-|. +..+...+++.+..|+++ +++++++.++++-|
T Consensus 12 ~~~~~~~~Y~~Ll~r~~e~~~~~~~~~-------~~~~ivd~-----A~~P~~P~~P~~~lil~l-~~~~Gl~lgi~~~~ 78 (82)
T PF13807_consen 12 DVEIKRELYETLLQRYEEARLSKASNV-------SNVRIVDP-----AIVPDKPVSPKRALILAL-GLFLGLILGIGLAF 78 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC-------CCceeccc-----cccCCCCCCCcHHHHHHH-HHHHHHHHHHHHHH
Confidence 445677788765555444444431111 11111111 233444667777777765 45566666766654
No 18
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=34.24 E-value=17 Score=28.95 Aligned_cols=26 Identities=35% Similarity=0.214 Sum_probs=21.5
Q ss_pred cccceeeehhHHHHhhhhhheeecCC
Q 044735 151 QYRNYAVIAGIITGVSALGWYLKSSR 176 (183)
Q Consensus 151 k~rNYAV~AGtVav~~algWYlks~~ 176 (183)
.|+|.--.||+.++|-||+||-.-+-
T Consensus 56 nykN~is~a~i~alViaIY~YTfYSi 81 (108)
T KOG4782|consen 56 NYKNHISFAGIGALVIAIYGYTFYSI 81 (108)
T ss_pred hhhhhhhhHHHHHHHHHhhhheeeeh
Confidence 47788889999999999999976543
No 19
>PTZ00234 variable surface protein Vir12; Provisional
Probab=34.21 E-value=20 Score=33.24 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=30.2
Q ss_pred CCCcccCcccccccceeeehhHHHHhhhhhheeecCCcc
Q 044735 140 AGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKK 178 (183)
Q Consensus 140 ~~tst~~VSTDk~rNYAV~AGtVav~~algWYlks~~KK 178 (183)
-++...++.+.-+||.-|.|.+++++--|-+|-+|.+=|
T Consensus 352 l~~~~d~~dSn~~rniim~~ailGtifFlfyyn~ss~lk 390 (433)
T PTZ00234 352 LEKTFGILKSEYFRHSIVGASIIGVLVFLFFFFKSTPIR 390 (433)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhcccchh
Confidence 345556666666899999999999999999998885543
No 20
>PF08315 cwf18: cwf18 pre-mRNA splicing factor ; InterPro: IPR013169 The cwf18 family is involved in mRNA splicing. It has been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) [].
Probab=33.35 E-value=60 Score=25.06 Aligned_cols=10 Identities=30% Similarity=0.554 Sum_probs=8.5
Q ss_pred HHHHHHHHhc
Q 044735 107 QEKLEKMARK 116 (183)
Q Consensus 107 ~EkLEKl~rk 116 (183)
++||.+|+.+
T Consensus 11 K~RL~~Lr~~ 20 (129)
T PF08315_consen 11 KERLAALRSK 20 (129)
T ss_pred HHHHHHHHcc
Confidence 5889999987
No 21
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=32.85 E-value=36 Score=33.52 Aligned_cols=29 Identities=38% Similarity=0.567 Sum_probs=18.1
Q ss_pred CCCcccCHHHHhhhhh-hHHHHHHHHHHHH
Q 044735 85 SSGKVLSEEEKAAENV-YIKKVEQEKLEKM 113 (183)
Q Consensus 85 sgGkvlsEeErAaENv-YIkK~E~EkLEKl 113 (183)
..-|..++||.|+|.- =.+|+|++||+.+
T Consensus 266 psdR~KT~EE~a~ee~erLeklE~~Rl~RM 295 (840)
T PF04147_consen 266 PSDRTKTEEEIAKEEKERLEKLEEERLKRM 295 (840)
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3459999999998752 2344444444433
No 22
>PF15506 OCC1: OCC1 family
Probab=31.93 E-value=31 Score=25.23 Aligned_cols=9 Identities=44% Similarity=0.803 Sum_probs=7.4
Q ss_pred cccccccee
Q 044735 148 STDQYRNYA 156 (183)
Q Consensus 148 STDk~rNYA 156 (183)
.-||.|||+
T Consensus 31 dddKRRNYG 39 (62)
T PF15506_consen 31 DDDKRRNYG 39 (62)
T ss_pred hhhhhcccC
Confidence 568899996
No 23
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=30.44 E-value=34 Score=24.24 Aligned_cols=12 Identities=33% Similarity=0.803 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHH
Q 044735 99 NVYIKKVEQEKL 110 (183)
Q Consensus 99 NvYIkK~E~EkL 110 (183)
+||++.||+||-
T Consensus 39 evymeR~e~ere 50 (52)
T PF14147_consen 39 EVYMERMEEERE 50 (52)
T ss_pred HHHHHHHHHHhc
Confidence 588888988873
No 24
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=29.27 E-value=30 Score=28.69 Aligned_cols=33 Identities=36% Similarity=0.608 Sum_probs=20.4
Q ss_pred CCcccCCCcccC-------CCCcccccch----hhHHHHHHHhh
Q 044735 44 PPHFISPTHKAE-------KLPPCIQKGF----MTTIMASRIAV 76 (183)
Q Consensus 44 ~~~~~~~~~~~~-------~~~~~~~rgs----vtr~m~~r~aa 76 (183)
+|-+-||+.|.- ++|||+|--. .|=.++-|++|
T Consensus 50 ~PVlhsp~rKlT~eeq~~WkIPp~ISNWKN~kGytIpLDKRlaa 93 (158)
T PF02731_consen 50 APVLHSPPRKLTKEEQQKWKIPPCISNWKNPKGYTIPLDKRLAA 93 (158)
T ss_pred CccccCCcccCCHHHHhcccCCCccccccCCCCCccCHHHHHhh
Confidence 344557777654 7999998532 33346666664
No 25
>cd01148 TroA_a Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=28.09 E-value=55 Score=25.97 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=22.4
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhcCCC
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARKGPK 119 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk~~k 119 (183)
|++|+.||+|.+ ||.+++++ +++++.+..+
T Consensus 136 g~~~g~e~~A~~--~i~~~~~~-~~~v~~~~~~ 165 (284)
T cd01148 136 GKIFDVEDRADK--LVADLKAR-LAEISAKVKG 165 (284)
T ss_pred HHHhCCHhHHHH--HHHHHHHH-HHHHHHhhcc
Confidence 889999999987 88888764 5566655444
No 26
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=26.89 E-value=48 Score=28.61 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=22.6
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhcCCC
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARKGPK 119 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk~~k 119 (183)
|++|+.|++|+| +|+.|+ +++++++++..+
T Consensus 164 G~i~G~e~~A~~--li~~~~-~~i~~i~~~~~~ 193 (359)
T PRK09534 164 GRLTGNCEAAAE--TNAEMR-DRVDAVEDRTAD 193 (359)
T ss_pred HHHhCCHHHHHH--HHHHHH-HHHHHHHHHhhc
Confidence 899999999987 788886 556666665443
No 27
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=26.31 E-value=71 Score=32.65 Aligned_cols=39 Identities=28% Similarity=0.327 Sum_probs=28.9
Q ss_pred chhhHHHHHHHhhhhhcccccCCCcccCHHHHhhhhhhHHHHHHHHHHHHHhc
Q 044735 64 GFMTTIMASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARK 116 (183)
Q Consensus 64 gsvtr~m~~r~aaR~~~R~fSsgGkvlsEeErAaENvYIkK~E~EkLEKl~rk 116 (183)
.++.+-|.+...||- .-|..+|||.|++ |+|+||+|...
T Consensus 249 D~~v~em~fe~rA~P-------sdRtkteeElA~~-------E~erLe~LE~e 287 (823)
T KOG2147|consen 249 DKLVKEMKFEKRARP-------SDRTKTEEELAQK-------EAERLEELEAE 287 (823)
T ss_pred HHHHHHhhcccccCc-------ccccCCHHHHHHH-------HHHHHHHHHhh
Confidence 566666776666663 2488999999975 88888888754
No 28
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=26.02 E-value=23 Score=25.32 Aligned_cols=14 Identities=43% Similarity=0.698 Sum_probs=11.9
Q ss_pred HHHHhhhhhheeec
Q 044735 161 IITGVSALGWYLKS 174 (183)
Q Consensus 161 tVav~~algWYlks 174 (183)
.|+++.||.||||.
T Consensus 51 ~vala~Gl~~YLk~ 64 (86)
T PF12971_consen 51 GVALASGLNWYLKY 64 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57888899999985
No 29
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=23.50 E-value=67 Score=21.18 Aligned_cols=20 Identities=40% Similarity=0.650 Sum_probs=15.5
Q ss_pred CcccCHHHHhhhhhhHHHHHHH
Q 044735 87 GKVLSEEEKAAENVYIKKVEQE 108 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~E 108 (183)
|+.|+.+++|++ |++++++.
T Consensus 108 g~~~~~~~~a~~--~~~~~~~~ 127 (148)
T cd00636 108 GKALGKEENAEE--LIAELDAR 127 (148)
T ss_pred HHHHCChHHHHH--HHHHHHHH
Confidence 788888899987 77777554
No 30
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=23.09 E-value=42 Score=24.38 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=16.0
Q ss_pred ccccCCCcccC------HHHHhhhhhh
Q 044735 81 RRFSSSGKVLS------EEEKAAENVY 101 (183)
Q Consensus 81 R~fSsgGkvls------EeErAaENvY 101 (183)
++.++|||||. .=+.|+|++|
T Consensus 45 ~l~t~GGRvl~v~~~g~tl~eA~~~ay 71 (93)
T PF02843_consen 45 QLVTNGGRVLTVVALGDTLEEAREKAY 71 (93)
T ss_dssp EEEE-SSEEEEEEEEESSHHHHHHHHH
T ss_pred EEEecCCeEEEEEEEcCCHHHHHHHHH
Confidence 78899999984 4577888887
No 31
>PF11427 HTH_Tnp_Tc3_1: Tc3 transposase; PDB: 1U78_A 1TC3_C.
Probab=22.80 E-value=62 Score=22.11 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=10.7
Q ss_pred CcccCHHHHhhhhhhHH
Q 044735 87 GKVLSEEEKAAENVYIK 103 (183)
Q Consensus 87 GkvlsEeErAaENvYIk 103 (183)
|+.|++.|||+=.+..+
T Consensus 2 G~~Lt~~Eqaqid~m~q 18 (50)
T PF11427_consen 2 GKTLTDAEQAQIDVMHQ 18 (50)
T ss_dssp S----HHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHH
Confidence 78999999999777764
No 32
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=22.69 E-value=87 Score=21.67 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=13.1
Q ss_pred ccCHHHHhhhhhhHHHHHHH
Q 044735 89 VLSEEEKAAENVYIKKVEQE 108 (183)
Q Consensus 89 vlsEeErAaENvYIkK~E~E 108 (183)
+||++|++.=|=+++++|++
T Consensus 1 iLs~~~~~~l~~~l~~~~~~ 20 (119)
T PF04536_consen 1 ILSQEERERLNQALAKLEKK 20 (119)
T ss_dssp -S-HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 58888888777777766653
No 33
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=22.36 E-value=1.1e+02 Score=29.72 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=13.7
Q ss_pred CCCCcccccch----hhHHHHHHHhh
Q 044735 55 EKLPPCIQKGF----MTTIMASRIAV 76 (183)
Q Consensus 55 ~~~~~~~~rgs----vtr~m~~r~aa 76 (183)
=|+||||+--. .|-..+-|++|
T Consensus 241 WKIPp~ISNWKNpkGYTipLdkRlaa 266 (506)
T KOG2441|consen 241 WKIPPCISNWKNPKGYTIPLDKRLAA 266 (506)
T ss_pred ccCCchhhcCcCCCCceecchhhhhh
Confidence 37999998522 34445555555
No 34
>COG0614 FepB ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=22.01 E-value=65 Score=25.37 Aligned_cols=31 Identities=35% Similarity=0.533 Sum_probs=21.7
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhcCCCC
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKP 120 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk~~k~ 120 (183)
|++|..||+|++ +|..|++ ++++++++..+-
T Consensus 159 g~~~g~e~~A~~--li~~~~~-~~~~~~~~~~~~ 189 (319)
T COG0614 159 GKALGKEEKAEE--LIAEYDQ-RLAALRARTADV 189 (319)
T ss_pred HHHhCcHHHHHH--HHHHHHH-HHHHHHHHhcCC
Confidence 899999999998 5566654 556666555543
No 35
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=21.81 E-value=55 Score=26.90 Aligned_cols=28 Identities=32% Similarity=0.627 Sum_probs=19.9
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhcC
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARKG 117 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk~ 117 (183)
|++|+.+|+|++ +|+.|+ +++++++++.
T Consensus 142 g~i~g~~~~A~~--li~~~~-~~l~~i~~~~ 169 (342)
T cd01139 142 GKALGREERAEE--FIEFYQ-ERIDRIRDRL 169 (342)
T ss_pred HHHhCCHHHHHH--HHHHHH-HHHHHHHHHH
Confidence 889999999987 566665 4556555443
No 36
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=21.80 E-value=89 Score=25.21 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=18.9
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhcC
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARKG 117 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk~ 117 (183)
|++|+.||||++- |+.|+ +++++++++.
T Consensus 117 g~~~g~~~~A~~l--i~~~~-~~l~~i~~~~ 144 (260)
T PRK03379 117 APWSPQPEKAEQA--AQSLL-QQYAALKAQY 144 (260)
T ss_pred HHHcCCHHHHHHH--HHHHH-HHHHHHHHHh
Confidence 8999999999874 55554 4455555443
No 37
>PF04534 Herpes_UL56: Herpesvirus UL56 protein; InterPro: IPR007620 In herpes simplex virus type 2, UL56 is thought to be a tail-anchored type II membrane protein involved in vesicular trafficking. The C-terminal hydrophobic region is required for association with the cytoplasmic membrane, and the N-terminal proline-rich region is important for the translocation of UL56 to the Golgi apparatus and cytoplasmic vesicles [].
Probab=21.33 E-value=98 Score=26.90 Aligned_cols=49 Identities=29% Similarity=0.283 Sum_probs=32.5
Q ss_pred ccccCCCCCCcccCC-CcccCCCCccccc-chhhHHHHHHHhhhhhccccc
Q 044735 36 IQIGNRNKPPHFISP-THKAEKLPPCIQK-GFMTTIMASRIAVRNFSRRFS 84 (183)
Q Consensus 36 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~r-gsvtr~m~~r~aaR~~~R~fS 84 (183)
|.||.--.||--.|+ +-----.+||.|- |-++..-..|-++|++.|.+.
T Consensus 40 IDi~~p~d~PPpys~~~~~~g~~~P~s~g~g~~~~~~rsRrA~~RAARrsR 90 (198)
T PF04534_consen 40 IDIGTPTDPPPPYSAGPSPRGPVRPASSGDGERCERGRSRRAQRRAARRSR 90 (198)
T ss_pred EecCCCCCCCCCCCCCcCccCCCCCccccccccchhhhhHHHHHHHHHHhh
Confidence 667777666655554 3334456788554 888877777777777776654
Done!