Query 044735
Match_columns 183
No_of_seqs 47 out of 49
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 10:38:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v7q_J ATPase inhibitor; ION t 97.7 2.4E-05 8.2E-10 55.7 2.9 36 87-122 19-54 (66)
2 1gmj_A ATPase inhibitor; coile 96.8 0.00046 1.6E-08 50.8 2.3 31 87-117 19-49 (84)
3 2zet_C Melanophilin; complex, 65.0 5.7 0.00019 30.7 3.5 32 88-119 15-52 (153)
4 2l2t_A Receptor tyrosine-prote 50.2 3.7 0.00013 26.8 0.2 15 164-178 25-39 (44)
5 2ks1_B Epidermal growth factor 50.0 5.1 0.00017 25.9 0.8 14 165-178 27-40 (44)
6 1zbd_B Rabphilin-3A; G protein 41.9 15 0.00051 27.7 2.4 35 88-122 8-48 (134)
7 4dn7_A ABC transporter, ATP-bi 38.3 16 0.00056 31.9 2.4 26 97-122 15-42 (429)
8 2lx0_A Membrane fusion protein 33.9 8.2 0.00028 24.1 -0.1 17 152-168 3-19 (32)
9 1ngm_B Transcription factor II 32.3 34 0.0012 24.2 2.9 35 87-121 38-72 (72)
10 3lhs_A Ferrichrome ABC transpo 27.7 33 0.0011 25.9 2.3 30 87-119 130-159 (296)
11 1n2z_A Vitamin B12 transport p 26.7 42 0.0014 24.8 2.7 28 87-117 102-129 (245)
12 4hn9_A Iron complex transport 26.5 34 0.0012 26.8 2.3 29 87-118 159-187 (335)
13 2chu_A CEUE, enterochelin upta 26.0 32 0.0011 26.3 2.0 30 87-119 140-169 (296)
14 2voy_D Sarcoplasmic/endoplasmi 25.8 14 0.00049 21.6 -0.0 17 156-172 10-26 (26)
15 3tny_A YFIY (ABC transport sys 25.1 30 0.001 26.4 1.7 27 87-116 138-164 (303)
16 3d01_A Uncharacterized protein 24.8 74 0.0025 23.9 3.8 27 97-123 2-28 (165)
17 3tef_A VCTP, iron(III) ABC tra 24.7 28 0.00094 25.7 1.4 27 87-116 125-151 (292)
18 2wi8_A Iron-uptake system-bind 23.5 29 0.001 26.9 1.4 27 87-116 138-164 (311)
19 3au7_A TIAS, putative uncharac 23.5 25 0.00085 31.2 1.0 13 160-172 161-173 (402)
20 1efd_N Ferrichrome-binding per 23.2 41 0.0014 25.0 2.1 29 87-118 112-140 (266)
21 3r5t_A Ferric vibriobactin ABC 22.7 43 0.0015 25.7 2.2 30 87-119 131-160 (305)
22 2cto_A Novel protein; high mob 21.9 1.6E+02 0.0056 20.5 4.9 32 88-122 51-82 (93)
23 3u02_A Putative transcription- 20.8 29 0.001 28.9 0.9 13 160-172 142-154 (252)
24 3rco_A Tudor domain-containing 20.5 36 0.0012 24.6 1.3 18 98-115 1-19 (89)
25 3fym_A Putative uncharacterize 20.3 57 0.0019 23.0 2.2 19 155-173 108-126 (130)
26 3tlk_A Ferrienterobactin-bindi 20.1 50 0.0017 25.6 2.0 30 87-119 160-189 (326)
No 1
>2v7q_J ATPase inhibitor; ION transport, mitochondrion, transit peptide, inhibitor Pro hydrolase; HET: ATP ADP; 2.1A {Bos taurus} SCOP: h.4.8.1
Probab=97.66 E-value=2.4e-05 Score=55.72 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=30.7
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEE 122 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk~~k~~e 122 (183)
|..|+..|+|.|+.||++.|+|+|++|+++..++.+
T Consensus 19 GgaFGKrEaA~Ee~Yfrk~ekEQL~~LKkkl~eq~~ 54 (66)
T 2v7q_J 19 GGAFGKREQAEEERYFRARAKEQLAALKKHHENEIS 54 (66)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred cCcccchHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999876543
No 2
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=96.84 E-value=0.00046 Score=50.83 Aligned_cols=31 Identities=23% Similarity=0.469 Sum_probs=29.0
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhcC
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARKG 117 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk~ 117 (183)
|..|+..|+|.|+.||++.|+|+|++|+++.
T Consensus 19 ggaFgKrEaA~Ee~YfrqkekEqL~~LKkkl 49 (84)
T 1gmj_A 19 GGAFGKREQAEEERYFRARAKEQLAALKKHK 49 (84)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999764
No 3
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=64.99 E-value=5.7 Score=30.66 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=23.1
Q ss_pred cccCHHHHhh------hhhhHHHHHHHHHHHHHhcCCC
Q 044735 88 KVLSEEEKAA------ENVYIKKVEQEKLEKMARKGPK 119 (183)
Q Consensus 88 kvlsEeErAa------ENvYIkK~E~EkLEKl~rk~~k 119 (183)
--|+||||.. -.-.++++|+|++.+|+.+.++
T Consensus 15 s~LteeEr~~Il~VL~Rd~~l~~~EeeRi~kLk~~l~~ 52 (153)
T 2zet_C 15 STLTDEEAEHVWAVVQRDFDLRRREEERLQGLKGKIQK 52 (153)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Confidence 3578888843 2235688999999999977544
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=50.16 E-value=3.7 Score=26.77 Aligned_cols=15 Identities=7% Similarity=-0.319 Sum_probs=7.5
Q ss_pred HhhhhhheeecCCcc
Q 044735 164 GVSALGWYLKSSRKK 178 (183)
Q Consensus 164 v~~algWYlks~~KK 178 (183)
+++.+.||+..+.+.
T Consensus 25 ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhhhhhh
Confidence 334555655555443
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=50.03 E-value=5.1 Score=25.94 Aligned_cols=14 Identities=14% Similarity=-0.145 Sum_probs=6.7
Q ss_pred hhhhhheeecCCcc
Q 044735 165 VSALGWYLKSSRKK 178 (183)
Q Consensus 165 ~~algWYlks~~KK 178 (183)
++.+.||+..+.+.
T Consensus 27 i~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 27 VALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHhhhhHh
Confidence 33455555554443
No 6
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=41.92 E-value=15 Score=27.66 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=21.6
Q ss_pred cccCHHHHhh-hhh-----hHHHHHHHHHHHHHhcCCCCCC
Q 044735 88 KVLSEEEKAA-ENV-----YIKKVEQEKLEKMARKGPKPEE 122 (183)
Q Consensus 88 kvlsEeErAa-ENv-----YIkK~E~EkLEKl~rk~~k~~e 122 (183)
-.|+|||+-. ++| ..++.|+|++.||+.+.++.+.
T Consensus 8 s~LteeE~~~Il~Vl~Rd~~l~~~E~~ri~kL~~~l~~~k~ 48 (134)
T 1zbd_B 8 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRK 48 (134)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4577888732 111 4577888888777776554443
No 7
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}
Probab=38.25 E-value=16 Score=31.93 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=9.4
Q ss_pred hhhhhHHHHH--HHHHHHHHhcCCCCCC
Q 044735 97 AENVYIKKVE--QEKLEKMARKGPKPEE 122 (183)
Q Consensus 97 aENvYIkK~E--~EkLEKl~rk~~k~~e 122 (183)
-||+|+|.|. ++++.+.++|....++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 42 (429)
T 4dn7_A 15 TENLYFQSMQTEQVSLKKRAESAAEKKA 42 (429)
T ss_dssp ---------CHHHHHHHHHHHHTTTCCC
T ss_pred cceeeehhhhhhHHHHHHHHHHhhcCCC
Confidence 5899999985 5555566666554444
No 8
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=33.93 E-value=8.2 Score=24.12 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=12.8
Q ss_pred ccceeeehhHHHHhhhh
Q 044735 152 YRNYAVIAGIITGVSAL 168 (183)
Q Consensus 152 ~rNYAV~AGtVav~~al 168 (183)
+.-+-|+||+|+.+.-|
T Consensus 3 htiweviaglvalltfl 19 (32)
T 2lx0_A 3 HTIWEVIAGLVALLTFL 19 (32)
T ss_dssp SSSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 44567999999988743
No 9
>1ngm_B Transcription factor IIIB BRF1 subunit; TFIIIB, TBP, TAF, protein-DNA complex, transcription/DNA complex; 2.95A {Saccharomyces cerevisiae} SCOP: j.104.1.1
Probab=32.31 E-value=34 Score=24.19 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=28.5
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhcCCCCC
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPE 121 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk~~k~~ 121 (183)
+-+|+|||-..-...--++=++-|+++++|..+.+
T Consensus 38 ~yiLteeEv~~K~~iW~~~N~dyL~eq~~K~~k~e 72 (72)
T 1ngm_B 38 AHLLNEEASKLKERIWIGLNADFLLEQESKRLKQE 72 (72)
T ss_dssp GSSCCHHHHHHHHHHHHHHTTTHHHHHHHTTTTTC
T ss_pred HhhCCHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 77899999887777777888888999888877653
No 10
>3lhs_A Ferrichrome ABC transporter lipoprotein; siderophore, iron, receptor, binding protein, T protein; HET: SF8; 1.30A {Staphylococcus aureus subsp} PDB: 3eiw_A 3eix_A* 3li2_A*
Probab=27.71 E-value=33 Score=25.88 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=22.4
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhcCCC
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARKGPK 119 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk~~k 119 (183)
|++|+.|++|++ +|..+|+ +++.++++.+.
T Consensus 130 g~~~g~~~~A~~--~~~~~~~-~~~~~~~~~~~ 159 (296)
T 3lhs_A 130 AKALNKEKEGEK--RLAEHDK-LINKYKDEIKF 159 (296)
T ss_dssp HHHTTCHHHHHH--HHHHHHH-HHHHHHHHCCS
T ss_pred HHHhCCHHHHHH--HHHHHHH-HHHHHHHHhhc
Confidence 789999999977 6777764 56777766544
No 11
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=26.71 E-value=42 Score=24.76 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=19.7
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhcC
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARKG 117 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk~ 117 (183)
|++|+.|++|++ +|+.+|+ ++++++++.
T Consensus 102 g~~lg~~~~A~~--~~~~~~~-~~~~~~~~~ 129 (245)
T 1n2z_A 102 APWSPQPDKAEQ--AAQSLLD-QYAQLKAQY 129 (245)
T ss_dssp GGGCSCHHHHHH--HHHHHHH-HHHHHHHHH
T ss_pred HHHhCCHHHHHH--HHHHHHH-HHHHHHHHh
Confidence 899999999987 5666664 455555443
No 12
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=26.50 E-value=34 Score=26.84 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=21.3
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhcCC
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARKGP 118 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk~~ 118 (183)
|++|+.||||+| +|..+|+ +++.++++.+
T Consensus 159 g~~lg~e~~A~~--li~~~~~-~~~~i~~~~~ 187 (335)
T 4hn9_A 159 GKITNNAGRAEA--LNNSIKT-FLADNKTNVS 187 (335)
T ss_dssp HHHTTCHHHHHH--HHHHHHH-HHHHHHHHTT
T ss_pred HHHcCCHHHHHH--HHHHHHH-HHHHHHHhcc
Confidence 889999999988 6777754 5666666543
No 13
>2chu_A CEUE, enterochelin uptake periplasmic binding protein; iron, mecam, SELF assembly, siderophore; HET: ECA; 2.40A {Campylobacter jejuni} SCOP: c.92.2.4
Probab=25.96 E-value=32 Score=26.26 Aligned_cols=30 Identities=23% Similarity=0.291 Sum_probs=22.7
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhcCCC
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARKGPK 119 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk~~k 119 (183)
|++|+.||+|++ +|+.+|+ +++.++++..+
T Consensus 140 g~~~g~~~~A~~--l~~~~~~-~~~~~~~~~~~ 169 (296)
T 2chu_A 140 AKLYGLEKEALE--KISDIKN-EIEKAKSIVDE 169 (296)
T ss_dssp HHHHTCHHHHHH--HHHHHHH-HHHHHHHTCCT
T ss_pred HHHhCcHHHHHH--HHHHHHH-HHHHHHHHhcC
Confidence 789999999987 7777765 56677766544
No 14
>2voy_D Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; hydrolasep-type ATPase, cryo-EM, helical reconstruction, membrane protein; 17.50A {Oryctolagus cuniculus}
Probab=25.84 E-value=14 Score=21.56 Aligned_cols=17 Identities=18% Similarity=-0.128 Sum_probs=9.4
Q ss_pred eeehhHHHHhhhhhhee
Q 044735 156 AVIAGIITGVSALGWYL 172 (183)
Q Consensus 156 AV~AGtVav~~algWYl 172 (183)
++..|++++.+.+.||+
T Consensus 10 G~yvg~aTvg~f~~wy~ 26 (26)
T 2voy_D 10 GGYVGAATVGAAAWXXX 26 (26)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred HHHHHHHhhheeEEecC
Confidence 34457777777778875
No 15
>3tny_A YFIY (ABC transport system substrate-binding PROT; schizokinen, nutrient binding protein, ABC transporter, metal transport; HET: SKZ; 1.55A {Bacillus cereus}
Probab=25.06 E-value=30 Score=26.41 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=18.9
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhc
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARK 116 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk 116 (183)
|++|+.|++|++ +|..+|+ +++.++++
T Consensus 138 g~~~g~e~~A~~--li~~~~~-~~~~~~~~ 164 (303)
T 3tny_A 138 AKALNKEKEGQK--VVADYES-RMKDLKGK 164 (303)
T ss_dssp HHHTTCHHHHHH--HHHHHHH-HHHHHHHH
T ss_pred HHHhCchHHHHH--HHHHHHH-HHHHHHHH
Confidence 789999999987 5666654 45555444
No 16
>3d01_A Uncharacterized protein; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; HET: PG5; 1.70A {Agrobacterium tumefaciens str}
Probab=24.82 E-value=74 Score=23.88 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=20.2
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCCCCCC
Q 044735 97 AENVYIKKVEQEKLEKMARKGPKPEET 123 (183)
Q Consensus 97 aENvYIkK~E~EkLEKl~rk~~k~~e~ 123 (183)
-||+|+..|.+.--++|++.+-.....
T Consensus 2 ~~~~~~~~~~~~~e~~l~~~~i~~~~~ 28 (165)
T 3d01_A 2 TENLYFQGMSDVIEGRLKELGFTLPVA 28 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred ccceEEeccccCHHHHHHhcCcCCCCC
Confidence 489999999877666777777665543
No 17
>3tef_A VCTP, iron(III) ABC transporter, periplasmic iron-compo binding protein; siderophore-binding protein, transport protein; 1.70A {Vibrio cholerae}
Probab=24.66 E-value=28 Score=25.71 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=18.6
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhc
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARK 116 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk 116 (183)
|++|+.|++|++ ||+.+|+ ++++++++
T Consensus 125 g~~~g~~~~A~~--~~~~~~~-~i~~~~~~ 151 (292)
T 3tef_A 125 GKVFAIEPAVEA--KIEQVDA-QFKSIMQY 151 (292)
T ss_dssp HHHHTCHHHHHH--HHHHHHH-HHHHHHHH
T ss_pred hHhhhHHHHHHH--HHHHHHH-HHHHHHHh
Confidence 789999999987 6677764 34444443
No 18
>2wi8_A Iron-uptake system-binding protein; bacillibactin and enterobactin binding, triscatecholate BIND protein, iron transport; 1.55A {Bacillus subtilis} PDB: 2why_A 2xuz_A* 2xv1_A* 2phz_A
Probab=23.47 E-value=29 Score=26.85 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=19.3
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhc
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARK 116 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk 116 (183)
|++|+.||+|+| +|+.+|+ ++++++++
T Consensus 138 g~~lg~e~~A~~--li~~~~~-~~~~v~~~ 164 (311)
T 2wi8_A 138 AQLTGKEKKAKK--IIADYEQ-DLKETKTK 164 (311)
T ss_dssp HHHHTCHHHHHH--HHHHHHH-HHHHHHHH
T ss_pred HHHhCCHHHHHH--HHHHHHH-HHHHHHHH
Confidence 789999999987 6777764 34555544
No 19
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=23.47 E-value=25 Score=31.18 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=12.3
Q ss_pred hHHHHhhhhhhee
Q 044735 160 GIITGVSALGWYL 172 (183)
Q Consensus 160 GtVav~~algWYl 172 (183)
|+|++|+||||++
T Consensus 161 GiIGALAAvGl~~ 173 (402)
T 3au7_A 161 GLIGALAAVGAEL 173 (402)
T ss_dssp HHHHHHHHHHCCC
T ss_pred eeEehhhhccccC
Confidence 9999999999986
No 20
>1efd_N Ferrichrome-binding periplasmic protein; periplasmic binding protein-siderophore complex, FHUD complex with gallichrome; HET: GCR; 1.90A {Escherichia coli} SCOP: c.92.2.1 PDB: 1k7s_N* 1k2v_N* 1esz_A*
Probab=23.18 E-value=41 Score=25.04 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=21.5
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhcCC
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARKGP 118 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk~~ 118 (183)
|++|+.||+|++ +|..+|+ +++.++++..
T Consensus 112 g~~~g~~~~A~~--~~~~~~~-~~~~i~~~~~ 140 (266)
T 1efd_N 112 ADLLNLQSAAET--HLAQYED-FIRSMKPRFV 140 (266)
T ss_dssp HHHHTCHHHHHH--HHHHHHH-HHHHHGGGGS
T ss_pred HHHhCCHHHHHH--HHHHHHH-HHHHHHHHhh
Confidence 789999999987 6777765 5666666554
No 21
>3r5t_A Ferric vibriobactin ABC transporter, periplasmic vibriobactin-binding protein; iron-vibriobactin transport protein; HET: VBN; 1.45A {Vibrio cholerae} PDB: 3r5s_A*
Probab=22.74 E-value=43 Score=25.72 Aligned_cols=30 Identities=23% Similarity=0.136 Sum_probs=22.8
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhcCCC
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARKGPK 119 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk~~k 119 (183)
|++|+.|++|++ +|..+|+ +++.++++...
T Consensus 131 g~~lg~~~~A~~--li~~~~~-~~~~v~~~~~~ 160 (305)
T 3r5t_A 131 GLATGLEEQAER--TIHNFEQ-WTKQVRDVLDL 160 (305)
T ss_dssp HHHHTCHHHHHH--HHHHHHH-HHHHHHTTCCC
T ss_pred HHHhCCHHHHHH--HHHHHHH-HHHHHHHhhcc
Confidence 889999999987 6777764 57777766554
No 22
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.90 E-value=1.6e+02 Score=20.54 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=22.2
Q ss_pred cccCHHHHhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q 044735 88 KVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEE 122 (183)
Q Consensus 88 kvlsEeErAaENvYIkK~E~EkLEKl~rk~~k~~e 122 (183)
+.|+++||. -|+++.++.|.+-.+...+..+.
T Consensus 51 k~ls~eEK~---pYe~~A~~~K~~y~kd~~~~~~~ 82 (93)
T 2cto_A 51 ALLREEEKE---KYAEMAREWRAAQGKDPGPSEKQ 82 (93)
T ss_dssp HHSCHHHHH---HHHHHHHHHHHHHHHCSSCCCCC
T ss_pred HcCCHHHHH---HHHHHHHHHHHHHhccccccccc
Confidence 567888886 59988887776666655554444
No 23
>3u02_A Putative transcription-associated protein TFIIS; structural genomics, PSI-biology; HET: TPO MSE CIT MES; 2.40A {Pyrococcus furiosus dsm 3638}
Probab=20.78 E-value=29 Score=28.86 Aligned_cols=13 Identities=54% Similarity=1.020 Sum_probs=11.8
Q ss_pred hHHHHhhhhhhee
Q 044735 160 GIITGVSALGWYL 172 (183)
Q Consensus 160 GtVav~~algWYl 172 (183)
|+|++|+||||-|
T Consensus 142 GiIGALAAiG~~l 154 (252)
T 3u02_A 142 GIIGGLAAIGYPL 154 (252)
T ss_dssp HHHHHHHHHHCCT
T ss_pred eeeehhhhccCCC
Confidence 9999999999954
No 24
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=20.54 E-value=36 Score=24.56 Aligned_cols=18 Identities=39% Similarity=0.671 Sum_probs=7.3
Q ss_pred hhhhHHHH-HHHHHHHHHh
Q 044735 98 ENVYIKKV-EQEKLEKMAR 115 (183)
Q Consensus 98 ENvYIkK~-E~EkLEKl~r 115 (183)
||+|+++| |.|.+.|.-|
T Consensus 1 ~~~~~~~m~~~e~V~k~iR 19 (89)
T 3rco_A 1 ENLYFQGMLEGDLVSKMLR 19 (89)
T ss_dssp -------CCHHHHHHHHHH
T ss_pred CceeeeeeccHHHHHHHHH
Confidence 79999886 6777777554
No 25
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=20.35 E-value=57 Score=23.00 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=0.0
Q ss_pred eeeehhHHHHhhhhhheee
Q 044735 155 YAVIAGIITGVSALGWYLK 173 (183)
Q Consensus 155 YAV~AGtVav~~algWYlk 173 (183)
..+++|++.+++.+.|++.
T Consensus 108 ~~i~~~~~i~i~~~~~~~~ 126 (130)
T 3fym_A 108 LLVIMGITVLITLLLWIML 126 (130)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677888888889999874
No 26
>3tlk_A Ferrienterobactin-binding periplasmic protein; ferric-enterobactin, trimer, siderophore transport, periplas space, metal transport; HET: EB4; 1.85A {Escherichia coli}
Probab=20.07 E-value=50 Score=25.64 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=21.4
Q ss_pred CcccCHHHHhhhhhhHHHHHHHHHHHHHhcCCC
Q 044735 87 GKVLSEEEKAAENVYIKKVEQEKLEKMARKGPK 119 (183)
Q Consensus 87 GkvlsEeErAaENvYIkK~E~EkLEKl~rk~~k 119 (183)
|++|+.||+|++ +|+.+|+ +++.++++...
T Consensus 160 g~~lg~~~~A~~--li~~~~~-~~~~i~~~~~~ 189 (326)
T 3tlk_A 160 GEITGHEKQAAE--RIAQFDK-QLAAAKEQIKL 189 (326)
T ss_dssp HHHHTCHHHHHH--HHHHHHH-HHHHHHHHBCC
T ss_pred HHHhCCHHHHHH--HHHHHHH-HHHHHHHhhcc
Confidence 789999999987 6677754 46666665543
Done!