BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044736
         (126 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
 pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
           Isopentenyladenine
 pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
 pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
           Benzylaminopurine
          Length = 534

 Score = 26.9 bits (58), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 37  KNRRSLSFSDRVGLQYSTTVDQDSSMGKSVR 67
           +NRR L F D  G+QY T + + +     VR
Sbjct: 473 QNRRILRFCDLAGIQYKTYLARHTDRSDWVR 503


>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
           COMPLEXED With N6-Isopentenyladenine
          Length = 516

 Score = 26.9 bits (58), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 37  KNRRSLSFSDRVGLQYSTTVDQDSSMGKSVR 67
           +NRR L F D  G+QY T + + +     VR
Sbjct: 455 QNRRILRFCDLAGIQYKTYLARHTDRSDWVR 485


>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
           COMPLEXED With N6-Isopentenyladenine
          Length = 516

 Score = 26.9 bits (58), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 37  KNRRSLSFSDRVGLQYSTTVDQDSSMGKSVR 67
           +NRR L F D  G+QY T + + +     VR
Sbjct: 455 QNRRILRFCDLAGIQYKTYLARHTDRSDWVR 485


>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
           COMPLEXED With N6-Isopentenyladenosine
          Length = 516

 Score = 26.9 bits (58), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 37  KNRRSLSFSDRVGLQYSTTVDQDSSMGKSVR 67
           +NRR L F D  G+QY T + + +     VR
Sbjct: 455 QNRRILRFCDLAGIQYKTYLARHTDRSDWVR 485


>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
           COMPLEXED With Phenylurea Inhibitor Cppu
 pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
           ALLENIC Cytokinin Analog Ha-1
 pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
           ALLENIC Cytokinin Analog Ha-8
 pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
           N6-(3-Methoxy- Phenyl)adenine
 pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
           Isopentenyladenosine
          Length = 516

 Score = 26.9 bits (58), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 37  KNRRSLSFSDRVGLQYSTTVDQDSSMGKSVR 67
           +NRR L F D  G+QY T + + +     VR
Sbjct: 455 QNRRILRFCDLAGIQYKTYLARHTDRSDWVR 485


>pdb|2X4I|A Chain A, Orf 114a From Sulfolobus Islandicus Rudivirus 1
 pdb|2X4I|B Chain B, Orf 114a From Sulfolobus Islandicus Rudivirus 1
 pdb|2X4I|C Chain C, Orf 114a From Sulfolobus Islandicus Rudivirus 1
 pdb|2X4I|D Chain D, Orf 114a From Sulfolobus Islandicus Rudivirus 1
          Length = 114

 Score = 26.6 bits (57), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 27 LASICGTTFSKNRRSLSFSDRVGLQYSTTVDQDSSMGK 64
          + S+CGTTF KNR  +       L Y   + Q    GK
Sbjct: 54 INSLCGTTFQKNRVEIKLEKEDKL-YVVQISQRLEEGK 90


>pdb|2XZL|A Chain A, Upf1-Rna Complex
          Length = 802

 Score = 25.8 bits (55), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 20  LKLSRWHLASICGTTFSKNRRSLSFSDRVGLQYSTTVDQD-SSMGKSVRSP 69
           L L+  HLAS   +TF  N   ++  D + L YS     D    G  VR P
Sbjct: 223 LALNNRHLASFTLSTFESNELKVAIGDEMILWYSGMQHPDWEGRGYIVRLP 273


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.133    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,757,426
Number of Sequences: 62578
Number of extensions: 75512
Number of successful extensions: 79
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 7
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)