Query 044736
Match_columns 126
No_of_seqs 30 out of 32
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 06:14:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05553 DUF761: Cotton fibre 99.3 4.5E-13 9.7E-18 83.4 2.6 34 84-118 1-34 (38)
2 PF07780 Spb1_C: Spb1 C-termin 33.5 15 0.00032 30.2 0.1 19 41-59 66-84 (215)
3 TIGR00340 zpr1_rel ZPR1-relate 28.6 37 0.00081 26.4 1.6 38 85-122 116-153 (163)
4 TIGR03687 pupylate_cterm ubiqu 27.8 22 0.00047 22.1 0.2 18 85-102 13-30 (33)
5 PF09628 YvfG: YvfG protein; 23.1 57 0.0012 23.0 1.6 14 92-105 5-18 (68)
6 TIGR00310 ZPR1_znf ZPR1 zinc f 22.1 60 0.0013 25.9 1.7 38 85-122 119-156 (192)
7 KOG2677 Stoned B synaptic vesi 20.3 73 0.0016 31.3 2.1 31 92-123 752-782 (922)
8 PF11485 DUF3211: Protein of u 19.8 1.2E+02 0.0025 23.5 2.8 22 87-108 111-132 (136)
9 PF04540 Herpes_UL51: Herpesvi 18.3 86 0.0019 25.3 1.8 16 3-18 25-40 (164)
10 cd04897 ACT_ACR_3 ACT domain-c 17.7 42 0.0009 23.1 -0.0 8 45-52 9-16 (75)
No 1
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=99.35 E-value=4.5e-13 Score=83.45 Aligned_cols=34 Identities=41% Similarity=0.712 Sum_probs=30.8
Q ss_pred CCchhhhhHHHHHHHHHHHHhHhhhhhhhheehhc
Q 044736 84 DNDNIDRNSEVFITNFRRRLLYERQVSLELLYRRV 118 (126)
Q Consensus 84 ~~~dId~~Ae~FI~nFr~Ql~lqRq~Slel~Y~~~ 118 (126)
++++||++||+||++||+||+||||.|+ .+|+++
T Consensus 1 ~~~evd~rAe~FI~~f~~qlrlqr~~S~-~ry~em 34 (38)
T PF05553_consen 1 SDDEVDRRAEEFIAKFREQLRLQRQESL-QRYQEM 34 (38)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3679999999999999999999999999 688765
No 2
>PF07780 Spb1_C: Spb1 C-terminal domain; InterPro: IPR012920 This presumed domain is found at the C terminus of a family of FtsJ-like methyltransferases. Members of this family are involved in 60S ribosomal biogenesis, for example P25582 from SWISSPROT []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005634 nucleus
Probab=33.54 E-value=15 Score=30.24 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.8
Q ss_pred ccccCCCCCcccccccccC
Q 044736 41 SLSFSDRVGLQYSTTVDQD 59 (126)
Q Consensus 41 rlSFndrpGL~~~~~~d~~ 59 (126)
|.+|||..||-+|+++|+.
T Consensus 66 Ryaf~D~d~LP~WF~eDE~ 84 (215)
T PF07780_consen 66 RYAFNDDDGLPDWFVEDEK 84 (215)
T ss_pred ccccCCCCCCchhHHHHHH
Confidence 8899999999999987773
No 3
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=28.58 E-value=37 Score=26.41 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=32.2
Q ss_pred CchhhhhHHHHHHHHHHHHhHhhhhhhhheehhccCCC
Q 044736 85 NDNIDRNSEVFITNFRRRLLYERQVSLELLYRRVNSFD 122 (126)
Q Consensus 85 ~~dId~~Ae~FI~nFr~Ql~lqRq~Slel~Y~~~nSf~ 122 (126)
+++..+++++||++.++-+.-++...|-|.=.-||||=
T Consensus 116 ~~e~~~k~~~~l~kL~~~~~g~~pfTlIldDP~GNS~I 153 (163)
T TIGR00340 116 DDEAVKKCEEILKRIREVIEGKFKFTLIIEDPFGNSFI 153 (163)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCeee
Confidence 44567899999999999888888888888888889985
No 4
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=27.77 E-value=22 Score=22.10 Aligned_cols=18 Identities=22% Similarity=0.584 Sum_probs=13.3
Q ss_pred CchhhhhHHHHHHHHHHH
Q 044736 85 NDNIDRNSEVFITNFRRR 102 (126)
Q Consensus 85 ~~dId~~Ae~FI~nFr~Q 102 (126)
|+=....||+|...|-|+
T Consensus 13 d~vLe~NAe~FV~~fVQK 30 (33)
T TIGR03687 13 DGVLESNAEEFVRGFVQK 30 (33)
T ss_pred HHHHHHhHHHHHHHHHHc
Confidence 334457899999999763
No 5
>PF09628 YvfG: YvfG protein; InterPro: IPR018590 Yvfg is a hypothetical protein of 71 residues expressed in some bacteria. The monomer consists of two parallel alpha helices, and the protein crystallises as a homo-dimer. ; PDB: 2GSV_A 2JS1_B.
Probab=23.14 E-value=57 Score=23.00 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhH
Q 044736 92 SEVFITNFRRRLLY 105 (126)
Q Consensus 92 Ae~FI~nFr~Ql~l 105 (126)
.+-||.||++.|.+
T Consensus 5 ~~~~~~N~~q~i~~ 18 (68)
T PF09628_consen 5 VPYFMENFKQHIQM 18 (68)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHh
Confidence 46799999998765
No 6
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=22.05 E-value=60 Score=25.87 Aligned_cols=38 Identities=8% Similarity=0.140 Sum_probs=31.8
Q ss_pred CchhhhhHHHHHHHHHHHHhHhhhhhhhheehhccCCC
Q 044736 85 NDNIDRNSEVFITNFRRRLLYERQVSLELLYRRVNSFD 122 (126)
Q Consensus 85 ~~dId~~Ae~FI~nFr~Ql~lqRq~Slel~Y~~~nSf~ 122 (126)
+++..+++++||++.++-+.-++...|-|.=.-||||=
T Consensus 119 ~~e~~~k~~~~i~kL~~~~~g~~pfTlIidDP~GNS~I 156 (192)
T TIGR00310 119 DEETKKRAEEILERLKEAIEGKEKFTVILEDPLGGSYI 156 (192)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEEEECCCCCeee
Confidence 44566899999999999888888888888878889984
No 7
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.29 E-value=73 Score=31.32 Aligned_cols=31 Identities=32% Similarity=0.339 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhHhhhhhhhheehhccCCCC
Q 044736 92 SEVFITNFRRRLLYERQVSLELLYRRVNSFDN 123 (126)
Q Consensus 92 Ae~FI~nFr~Ql~lqRq~Slel~Y~~~nSf~~ 123 (126)
-++.|+|||+ +.++++-||+-+-.++-+|++
T Consensus 752 Ps~WIk~fr~-e~~~g~kSlkaK~nR~a~~gs 782 (922)
T KOG2677|consen 752 PSEWIKNFRR-ESVLGEKSLKAKVNRGASFGS 782 (922)
T ss_pred cHHHHHHHHH-Hhhhccchhhhhhcccccccc
Confidence 4789999987 789999999988888888874
No 8
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=19.84 E-value=1.2e+02 Score=23.49 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=19.6
Q ss_pred hhhhhHHHHHHHHHHHHhHhhh
Q 044736 87 NIDRNSEVFITNFRRRLLYERQ 108 (126)
Q Consensus 87 dId~~Ae~FI~nFr~Ql~lqRq 108 (126)
-|+++-+.|.+||-+-++|||=
T Consensus 111 ~i~~~i~~f~~~ldE~IRlERI 132 (136)
T PF11485_consen 111 FISKWIEKFKKNLDEEIRLERI 132 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHhH
Confidence 5788899999999999999983
No 9
>PF04540 Herpes_UL51: Herpesvirus UL51 protein; InterPro: IPR007625 UL51 protein is a virion protein. In Suid herpesvirus 1 (Pseudorabies virus), UL51 (Q85227 from SWISSPROT) was identified as a component of the capsid []. In Human herpesvirus 1 (HHV-1) there is evidence for post-translational modification of UL51 [].
Probab=18.26 E-value=86 Score=25.33 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHhh
Q 044736 3 LRRIKKAVKKLNMILS 18 (126)
Q Consensus 3 L~~lr~AVkKv~flLs 18 (126)
+.||++||+-||.||-
T Consensus 25 ~~Rl~eAl~~Vn~lLP 40 (164)
T PF04540_consen 25 ELRLQEALAVVNILLP 40 (164)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 5799999999999984
No 10
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=17.71 E-value=42 Score=23.05 Aligned_cols=8 Identities=38% Similarity=0.576 Sum_probs=7.0
Q ss_pred CCCCCccc
Q 044736 45 SDRVGLQY 52 (126)
Q Consensus 45 ndrpGL~~ 52 (126)
-|||||+.
T Consensus 9 ~DRpGLL~ 16 (75)
T cd04897 9 RDRPKLLF 16 (75)
T ss_pred CCcCcHHH
Confidence 48999998
Done!