Query 044736
Match_columns 126
No_of_seqs 30 out of 32
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 10:40:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m3w_A H10H24; four-helix bund 44.1 15 0.00051 21.7 2.1 21 86-106 4-24 (32)
2 1q40_B MEX67, mRNA export fact 38.0 18 0.00062 28.0 2.4 34 84-119 9-42 (219)
3 1of5_A MRNA export factor MEX6 38.0 19 0.00066 27.9 2.6 28 84-111 6-33 (221)
4 1jkg_B TAP; NTF2-like domain, 23.9 37 0.0013 26.1 2.0 34 84-119 10-44 (250)
5 3q90_A RAS GTPase-activating p 21.0 61 0.0021 22.6 2.5 33 85-119 6-38 (140)
6 2ejx_A ST0812; arcaea, unknown 18.4 83 0.0028 23.4 2.8 21 88-108 115-135 (139)
7 2gom_A Fibrinogen-binding prot 17.9 41 0.0014 22.3 0.9 17 100-116 42-58 (61)
8 1jkg_A P15; NTF2-like domain, 17.8 76 0.0026 22.0 2.4 32 86-119 11-42 (140)
9 3bhp_A UPF0291 protein YNZC; N 15.3 84 0.0029 20.5 2.0 13 93-105 35-47 (60)
10 2ll1_A U1-TRTX-SP1A; toxin; NM 15.3 54 0.0018 19.3 0.9 12 45-56 11-22 (33)
No 1
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=44.09 E-value=15 Score=21.68 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.3
Q ss_pred chhhhhHHHHHHHHHHHHhHh
Q 044736 86 DNIDRNSEVFITNFRRRLLYE 106 (126)
Q Consensus 86 ~dId~~Ae~FI~nFr~Ql~lq 106 (126)
..|=+.-|+|.++|.+-|++.
T Consensus 4 geiwklheeflkkfeellklh 24 (32)
T 1m3w_A 4 GEIWKLHEEFLKKFEELLKLH 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 468888999999999998875
No 2
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Probab=38.05 E-value=18 Score=27.97 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=22.5
Q ss_pred CCchhhhhHHHHHHHHHHHHhHhhhhhhhheehhcc
Q 044736 84 DNDNIDRNSEVFITNFRRRLLYERQVSLELLYRRVN 119 (126)
Q Consensus 84 ~~~dId~~Ae~FI~nFr~Ql~lqRq~Slel~Y~~~n 119 (126)
.++++..-|++||++||.-.-=.|+. | +.++..+
T Consensus 9 ~~~~~~~~~~~Fl~~Yy~~fDsdR~~-L-~~lY~~~ 42 (219)
T 1q40_B 9 QDEDSRNLATNFIANYLKLWDANRSE-L-MILYQNE 42 (219)
T ss_dssp ----CHHHHHHHHHHHHHHHHSCGGG-G-GGGCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHccCHHH-H-HHhhccc
Confidence 35678899999999999888777765 4 3444444
No 3
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=37.99 E-value=19 Score=27.89 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=22.3
Q ss_pred CCchhhhhHHHHHHHHHHHHhHhhhhhh
Q 044736 84 DNDNIDRNSEVFITNFRRRLLYERQVSL 111 (126)
Q Consensus 84 ~~~dId~~Ae~FI~nFr~Ql~lqRq~Sl 111 (126)
.++++..-|++||++||.-.-=.|+.=+
T Consensus 6 ~d~~~~~~~~~Fv~~Yy~~fDsdR~~L~ 33 (221)
T 1of5_A 6 ENDALGQSSTDFATNFLNLWDNNREQLL 33 (221)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHCGGGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 3567888999999999988887776533
No 4
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=23.93 E-value=37 Score=26.09 Aligned_cols=34 Identities=18% Similarity=0.078 Sum_probs=25.2
Q ss_pred CCchhhhhHHHHHHHHHHHHhHh-hhhhhhheehhcc
Q 044736 84 DNDNIDRNSEVFITNFRRRLLYE-RQVSLELLYRRVN 119 (126)
Q Consensus 84 ~~~dId~~Ae~FI~nFr~Ql~lq-Rq~Slel~Y~~~n 119 (126)
.++++..-|++|+..||.-.-=. |+. | +.++..+
T Consensus 10 ~~~~~~~~~~~Fv~~Yy~~fD~~~R~~-L-~~lY~~~ 44 (250)
T 1jkg_B 10 GTENLKSLVLHFLQQYYAIYDSGDRQG-L-LDAYHDG 44 (250)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTSSCGGG-G-GGTEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHCcCcHHH-H-HHhhCcC
Confidence 45788999999999999877776 775 4 3334344
No 5
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=21.03 E-value=61 Score=22.60 Aligned_cols=33 Identities=12% Similarity=0.029 Sum_probs=23.1
Q ss_pred CchhhhhHHHHHHHHHHHHhHhhhhhhhheehhcc
Q 044736 85 NDNIDRNSEVFITNFRRRLLYERQVSLELLYRRVN 119 (126)
Q Consensus 85 ~~dId~~Ae~FI~nFr~Ql~lqRq~Slel~Y~~~n 119 (126)
..+.+.-|++|+..||.-+-=.|+ .| .+++..+
T Consensus 6 ~p~~~~vg~~Fv~~YY~~ld~~r~-~L-~~~Y~~~ 38 (140)
T 3q90_A 6 KPSPLLVGREFVRQYYTLLNQAPD-ML-HRFYGKN 38 (140)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCGG-GG-GGGEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHH-HH-HhhcccC
Confidence 356788899999999998885554 36 5555554
No 6
>2ejx_A ST0812; arcaea, unknown function, NPPSFA; 1.79A {Sulfolobus tokodaii str}
Probab=18.38 E-value=83 Score=23.45 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=19.2
Q ss_pred hhhhHHHHHHHHHHHHhHhhh
Q 044736 88 IDRNSEVFITNFRRRLLYERQ 108 (126)
Q Consensus 88 Id~~Ae~FI~nFr~Ql~lqRq 108 (126)
|+++-+.|.+||-+-+++||=
T Consensus 115 i~k~i~~f~k~ldE~IRlERI 135 (139)
T 2ejx_A 115 VSSNLDRLAENIDEIIRLERI 135 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHhhh
Confidence 788899999999999999983
No 7
>2gom_A Fibrinogen-binding protein; three-helix closed bundle with LEFT-hand twist, cell adhesio complex; 1.25A {Staphylococcus aureus} SCOP: a.7.17.1 PDB: 2gox_B 3d5s_C 3d5r_C
Probab=17.89 E-value=41 Score=22.31 Aligned_cols=17 Identities=6% Similarity=0.188 Sum_probs=14.2
Q ss_pred HHHHhHhhhhhhhheeh
Q 044736 100 RRRLLYERQVSLELLYR 116 (126)
Q Consensus 100 r~Ql~lqRq~Slel~Y~ 116 (126)
++.++||||+-+-|.|.
T Consensus 42 ~~K~~LQ~~ID~VLK~~ 58 (61)
T 2gom_A 42 VKKMVLQERIDNVLKQG 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 67799999999988774
No 8
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=17.81 E-value=76 Score=21.95 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=22.5
Q ss_pred chhhhhHHHHHHHHHHHHhHhhhhhhhheehhcc
Q 044736 86 DNIDRNSEVFITNFRRRLLYERQVSLELLYRRVN 119 (126)
Q Consensus 86 ~dId~~Ae~FI~nFr~Ql~lqRq~Slel~Y~~~n 119 (126)
+....-|++|+..||..+-=.|+. | ++++..+
T Consensus 11 ~~a~~v~~~Fv~~YY~~~d~~r~~-L-~~~Y~~~ 42 (140)
T 1jkg_A 11 DQACRAAEEFVNVYYTTMDKRRRL-L-SRLYMGT 42 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGG-G-GGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHH-H-HHhcCCC
Confidence 455677999999999988776655 4 3444444
No 9
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=15.33 E-value=84 Score=20.49 Aligned_cols=13 Identities=15% Similarity=0.483 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhH
Q 044736 93 EVFITNFRRRLLY 105 (126)
Q Consensus 93 e~FI~nFr~Ql~l 105 (126)
.++|++||.+++=
T Consensus 35 ~eYl~~fR~~~r~ 47 (60)
T 3bhp_A 35 QEYLKGFRSSMKN 47 (60)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5788888888764
No 10
>2ll1_A U1-TRTX-SP1A; toxin; NMR {Theraphosidae}
Probab=15.32 E-value=54 Score=19.35 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=9.6
Q ss_pred CCCCCccccccc
Q 044736 45 SDRVGLQYSTTV 56 (126)
Q Consensus 45 ndrpGL~~~~~~ 56 (126)
|||||-.-|+|-
T Consensus 11 ndrpghrtccig 22 (33)
T 2ll1_A 11 NDRPGHRTCCIG 22 (33)
T ss_dssp TCBTTBCSBCTT
T ss_pred CCCCCceeeEEe
Confidence 789998887763
Done!