BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044737
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 134 LDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192
+ AI+ ++AI LNPS AI Y R+ Y++ + A+ DAT A+E++ KGY R
Sbjct: 37 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIELDKKYIKGYYRRA 96
Query: 193 MAHAMLGHWEEAVHDLHVASKI 214
++ LG + A+ D K+
Sbjct: 97 ASNMALGKFRAALRDYETVVKV 118
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 156 TRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
T+A+ Y K K AI+ + A+E+NP +A Y R +A+ + A++D A ++D
Sbjct: 26 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIELD 85
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 134 LDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192
+ AI+ ++AI LNPS AI Y R+ Y++ + A+ DAT A+E++ KGY R
Sbjct: 29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 88
Query: 193 MAHAMLGHWEEAVHDLHVASKI 214
++ LG + A+ D K+
Sbjct: 89 ASNMALGKFRAALRDYETVVKV 110
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 156 TRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
T+A+ Y K K AI+ + A+E+NP +A Y R +A+ + A+ D A ++D
Sbjct: 18 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD 77
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 135 DEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM 193
+ AI+ ++AI LNPS AI Y R+ Y++ + A+ DAT A+E++ KGY R
Sbjct: 23 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82
Query: 194 AHAMLGHWEEAVHDLHVASKI 214
++ LG + A+ D K+
Sbjct: 83 SNMALGKFRAALRDYETVVKV 103
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 156 TRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
T+A+ Y K K AI+ + A+E+NP +A Y R +A+ + A+ D A ++D
Sbjct: 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD 70
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 129 ISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG 187
+S G +D+A++ +EAI L+P + ++Y+ R++ Y K A D +++ PD KG
Sbjct: 15 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKG 74
Query: 188 YKTRGMAHAMLGHWEEA 204
Y + A L +EEA
Sbjct: 75 YSRKAAALEFLNRFEEA 91
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 133 KLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTR 191
K EA AI NP A+ Y RA Y+KM++P A+ D ALE++ S K +
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83
Query: 192 GMAHAMLGHWEEAVHDLHVA------SKIDFDEEIAAVLKKVEPNALRI 234
G + ++EA+ +L A +++F ++I P+ALRI
Sbjct: 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI--------PSALRI 124
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 133 KLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTR 191
K EA AI NP A+ Y RA Y+KM++P A+ D ALE++ S K +
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 192 GMAHAMLGHWEEAVHDLHVA------SKIDFDEEIAAVLKKVEPNALRI 234
G + ++EA+ +L A +++F ++I P+ALRI
Sbjct: 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI--------PSALRI 119
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 134 LDEAIELSTEAIMLNPSA-IMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192
+EAI+ AI L+P+ + Y+ ++ YI I T ALEI PD +K R
Sbjct: 37 FNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA 96
Query: 193 MAHAMLGHWEEAVHDLHVAS-KIDFD 217
A+ LG++ +A+ DL V S DFD
Sbjct: 97 SANESLGNFTDAMFDLSVLSLNGDFD 122
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 134 LDEAIELSTEAIMLNPSA-IMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192
+EAI+ AI L+P+ + Y+ ++ YI I T ALEI PD +K R
Sbjct: 41 FNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA 100
Query: 193 MAHAMLGHWEEAVHDLHVAS-KIDFD 217
A+ LG++ +A+ DL V S DFD
Sbjct: 101 SANESLGNFTDAMFDLSVLSLNGDFD 126
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 129 ISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG 187
+G +AIE +A+ L+P+ A + + Y K AI ALE++P++AK
Sbjct: 20 YKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKA 79
Query: 188 YKTRGMAHAMLGHWEEAVHDLHVASKID 215
+ RG A+ G +++A+ D A ++D
Sbjct: 80 WYRRGNAYYKQGDYQKAIEDYQKALELD 107
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 129 ISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG 187
+G +AIE +A+ L+P+ A + R + Y K AI D ALE++P++AK
Sbjct: 54 YKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113
Query: 188 YKTRGMAHAMLG 199
+ G A G
Sbjct: 114 KQNLGNAKQKQG 125
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLH 209
SA + + Y K AI ALE++P++A + G A+ G +++A+
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 210 VASKID 215
A ++D
Sbjct: 68 KALELD 73
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 129 ISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG 187
+G DEAIE +A+ L+P SA + + Y K + AI ALE++P SA+
Sbjct: 12 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
Query: 188 YKTRGMAHAMLGHWEEAVHDLHVASKID 215
+ G A+ G ++EA+ A ++D
Sbjct: 72 WYNLGNAYYKQGDYDEAIEYYQKALELD 99
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 129 ISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG 187
+G DEAIE +A+ L+P SA + + Y K + AI ALE++P SA+
Sbjct: 46 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Query: 188 YKTRGMAHAMLGHWEEAVHDLHVASKID 215
+ G A+ G ++EA+ A ++D
Sbjct: 106 WYNLGNAYYKQGDYDEAIEYYQKALELD 133
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 158 ASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
+ Y K + AI ALE++P SA+ + G A+ G ++EA+ A ++D
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 134 LDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192
+ A+ +AI LNP+ A+ + RA+ Y K+ A++D A+ I+P +K Y G
Sbjct: 28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87
Query: 193 MAHAMLGHWEEAVHDLHVASKIDFDEE 219
+A + L EAV A ++D D E
Sbjct: 88 LALSSLNKHVEAVAYYKKALELDPDNE 114
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 156 TRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
T + +K++ AA+ A+E+NP +A + R A++ LG++ AV D A ID
Sbjct: 17 TEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID 76
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 129 ISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG 187
+G DEAIE +A+ L+P+ A + + Y K + AI ALE++P++A+
Sbjct: 20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Query: 188 YKTRGMAHAMLGHWEEAVHDLHVASKID 215
+ G A+ G ++EA+ A ++D
Sbjct: 80 WYNLGNAYYKQGDYDEAIEYYQKALELD 107
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 129 ISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG 187
+G DEAIE +A+ L+P+ A + + Y K + AI ALE++P++A+
Sbjct: 54 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
Query: 188 YKTRGMAHAMLG 199
+ G A G
Sbjct: 114 KQNLGNAKQKQG 125
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLH 209
SA + + Y K + AI ALE++P++A+ + G A+ G ++EA+
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 210 VASKID 215
A ++D
Sbjct: 68 KALELD 73
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%)
Query: 133 KLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192
K D+AI+ A+ L + Y+ ++ Y+ + + +T ALE+ PD +K R
Sbjct: 21 KYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRA 80
Query: 193 MAHAMLGHWEEAVHDLHVAS 212
A+ LG + +A+ DL V S
Sbjct: 81 SANEGLGKFADAMFDLSVLS 100
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 129 ISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG 187
+G +A++ TEAI NP A +Y+ RA+ Y K+ + A++D +++ P KG
Sbjct: 27 FQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG 86
Query: 188 YKTRGMAHAMLGHWEEAVHDLHVASKID 215
Y + A + + +A+ A +D
Sbjct: 87 YTRKAAALEAMKDYTKAMDVYQKALDLD 114
>pdb|2LNM|A Chain A, Solution Structure Of The C-Terminal Np-Repeat Domain Of
Tic40, A Co- Chaperone During Protein Import Into
Chloroplasts
Length = 62
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 344 SKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGG 397
SKI+ +P++ AF +P V AAL + +NP N+ ++Q + +V + K+ F G
Sbjct: 6 SKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQLFPG 59
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 129 ISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG 187
+G DEAIE +A+ L P+ A + + Y K + AI ALE+ P++A+
Sbjct: 20 YKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 79
Query: 188 YKTRGMAHAMLGHWEEAV 205
+ G A+ G ++EA+
Sbjct: 80 WYNLGNAYYKQGDYDEAI 97
>pdb|2LLW|A Chain A, Solution Structure Of The Yeast Sti1 Dp2 Domain
Length = 71
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 343 FSKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMA 393
+ + + DPE+ A DP + + LQ +NPA L +H NP+V I ++A
Sbjct: 13 YQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTLIA 63
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 129 ISEGKLDEAIELSTEAIMLNPSAIMYATRAS-----VYIKMKKPNAAIRDATAALEINPD 183
I +G+ +A + PS Y R+ + K +KP AIR + L++ PD
Sbjct: 268 IRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD 327
Query: 184 SAKGYKTRGMAHAMLGHWEEAVHDLHVASKI-DFDEEIAAVLKKVE 228
+ K R A+ + ++EA+ D A + + D++I L+K +
Sbjct: 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQ 373
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 131 EGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYK 189
+GKL EA+ EAI ++P+ A Y+ + +M+ A++ T A++INP A +
Sbjct: 56 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS 115
Query: 190 TRGMAHAMLGHWEEAVHDLHVASKI--DF 216
H G+ EA+ A K+ DF
Sbjct: 116 NLASIHKDSGNIPEAIASYRTALKLKPDF 144
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 129 ISEGKLDEAIELSTEAIMLNPSAIMYATRAS-----VYIKMKKPNAAIRDATAALEINPD 183
I +G+ +A PS Y R+ + K +KP AIR + L+ PD
Sbjct: 268 IRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQXEPD 327
Query: 184 SAKGYKTRGMAHAMLGHWEEAVHDLHVASKI-DFDEEIAAVLKKVE 228
+ K R A+ + ++EA+ D A + + D++I L+K +
Sbjct: 328 NVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIREGLEKAQ 373
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 129 ISEGKLDEAIELSTEAIMLNPSAIMYATRAS-----VYIKMKKPNAAIRDATAALEINPD 183
I +G+ +A PS Y R+ + K +KP AIR + L+ PD
Sbjct: 245 IRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQXEPD 304
Query: 184 SAKGYKTRGMAHAMLGHWEEAVHDLHVA 211
+ K R A+ + ++EA+ D A
Sbjct: 305 NVNALKDRAEAYLIEEXYDEAIQDYEAA 332
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 129 ISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG 187
+G DEAIE +A+ L+P +A + + Y K + AI ALE++P++A+
Sbjct: 20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Query: 188 YKTRGMAHAMLG 199
+ G A G
Sbjct: 80 KQNLGNAKQKQG 91
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLH 209
SA + + Y K + AI ALE++P++A+ + G A+ G ++EA+
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 210 VASKID 215
A ++D
Sbjct: 68 KALELD 73
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 129 ISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG 187
+G A+ EA+ +P +AI+Y+ RA+ K+ + A+ D + ++ KG
Sbjct: 24 FKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83
Query: 188 YKTRGMAHAMLGHWEEAVHDLHVASKID 215
Y + + W +A A ++D
Sbjct: 84 YIRKAACLVAMREWSKAQRAYEDALQVD 111
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 158 ASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD 217
A ++K++ +AAI ALE++ ++ KG RG AH AV+D +A + DF
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL-------AVNDFELA-RADFQ 254
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 158 ASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD 217
A ++K++ +AAI ALE++ ++ KG RG AH AV+D +A + DF
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHL-------AVNDFELA-RADFQ 254
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 144 AIMLNPSAI-MYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWE 202
AI L+PS I Y +A+VY + KK ++ A+E+ ++ YK A + G+
Sbjct: 34 AIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAF 93
Query: 203 EAVHDLHVA 211
+ +DL +A
Sbjct: 94 QKQNDLSLA 102
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 133 KLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTR 191
+LD + ST AI NP A Y+ +VY + + AI AL + PD GY
Sbjct: 48 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107
Query: 192 GMAHAMLGHWEEAV 205
A G E AV
Sbjct: 108 AAALVAAGDMEGAV 121
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 163 KMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIA 221
K+KK A+ AL + P +A Y G H++ G++E AV H A + D+ +
Sbjct: 248 KLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLXGNFENAVDYFHTALGLRRDDTFS 306
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 158 ASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
A+ Y K K AI A+ L+I+ ++ K G+A+ G EEA +L+ A+ ++
Sbjct: 95 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 147 LNPSAIMYATR-ASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAV 205
L P A+ + +KM A+ ALEI+P + K R L +++A+
Sbjct: 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQAL 327
Query: 206 HDLHVASKID-FDEEIAAVLKKVE 228
DL A +I D+ I A L KV+
Sbjct: 328 ADLKKAQEIAPEDKAIQAELLKVK 351
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 131 EGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS 184
+G DEAIE +A+ L+P SA + + Y K + AI ALE++P S
Sbjct: 16 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 70
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLH 209
SA + + Y K + AI ALE++P SA+ + G A+ G ++EA+
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 210 VASKID 215
A ++D
Sbjct: 62 KALELD 67
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 134 LDEAIELSTEAIMLNPSAIMYAT-RASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192
D A++ +A L+P+ + Y T +A+VY + N A+E+ ++ + Y+
Sbjct: 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79
Query: 193 MAHAMLGH---WEEAVHD-LHVASKIDFDEEIAAVLKKVE 228
A+A +G+ EE D +H +K + VLKK +
Sbjct: 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119
>pdb|3KRU|A Chain A, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|B Chain B, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|C Chain C, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|D Chain D, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
Length = 343
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 4 EKVKELKQFIDQCKSNPSILA 24
E+VKELK+ +D CK+N +++
Sbjct: 78 EQVKELKKIVDICKANGAVMG 98
>pdb|3KRZ|A Chain A, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|B Chain B, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|C Chain C, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|D Chain D, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
Length = 337
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 4 EKVKELKQFIDQCKSNPSILA 24
E+VKELK+ +D CK+N +++
Sbjct: 78 EQVKELKKIVDICKANGAVMG 98
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 134 LDEAIELSTEAIMLNPSAIMYAT-RASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192
D A++ +A L+P+ + Y T +A+VY + N A+E+ ++ + Y+
Sbjct: 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79
Query: 193 MAHAMLGH---WEEAVHD-LHVASKIDFDEEIAAVLKKVE 228
A+A +G+ EE D +H +K + VLKK +
Sbjct: 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 136 EAIELSTEAIMLNPSAIMY-ATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA 194
+AI+L T+A+ + P+ +Y + RA+ Y + A DA A ++P +K + G+A
Sbjct: 29 KAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88
Query: 195 H 195
Sbjct: 89 R 89
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 134 LDEAIELSTEAIMLNPSAIMY-ATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192
D A++ +A L+P+ + Y +A+VY + N A+E+ ++ + Y+
Sbjct: 20 FDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRMIA 79
Query: 193 MAHAMLGH---WEEAVHD-LHVASKIDFDEEIAAVLKKVE 228
A+A +G+ EE D +H +K + VLKK +
Sbjct: 80 YAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPKVLKKCQ 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,062,653
Number of Sequences: 62578
Number of extensions: 202328
Number of successful extensions: 442
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 379
Number of HSP's gapped (non-prelim): 67
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)