Query 044737
Match_columns 399
No_of_seqs 481 out of 4078
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:15:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1308 Hsp70-interacting prot 100.0 5.6E-68 1.2E-72 499.6 18.9 372 1-398 1-376 (377)
2 KOG0548 Molecular co-chaperone 99.9 8.6E-25 1.9E-29 217.2 19.3 175 117-394 357-533 (539)
3 KOG0550 Molecular chaperone (D 99.9 4.1E-24 8.8E-29 206.4 16.7 172 113-285 244-444 (486)
4 KOG0553 TPR repeat-containing 99.9 8.9E-24 1.9E-28 197.9 17.3 107 113-219 76-183 (304)
5 KOG0548 Molecular co-chaperone 99.9 3.1E-22 6.7E-27 199.1 14.7 177 118-393 2-180 (539)
6 KOG0624 dsRNA-activated protei 99.9 9.8E-21 2.1E-25 179.4 17.3 173 114-287 265-469 (504)
7 KOG4234 TPR repeat-containing 99.8 4.4E-18 9.4E-23 151.0 14.1 107 113-219 90-202 (271)
8 KOG0543 FKBP-type peptidyl-pro 99.7 5.8E-17 1.3E-21 157.8 17.4 124 110-233 200-340 (397)
9 KOG4648 Uncharacterized conser 99.7 6.3E-17 1.4E-21 153.7 9.8 109 110-218 89-198 (536)
10 KOG0547 Translocase of outer m 99.7 6E-16 1.3E-20 152.7 14.8 109 110-218 107-217 (606)
11 KOG0551 Hsp90 co-chaperone CNS 99.7 2.2E-15 4.8E-20 142.8 15.7 104 116-219 79-187 (390)
12 KOG1308 Hsp70-interacting prot 99.6 3.2E-16 7E-21 149.2 8.5 66 117-182 147-213 (377)
13 PLN03088 SGT1, suppressor of 99.6 1E-14 2.2E-19 145.1 16.6 111 119-229 3-115 (356)
14 PRK15359 type III secretion sy 99.6 2.8E-14 6E-19 124.0 16.3 109 120-228 26-136 (144)
15 TIGR00990 3a0801s09 mitochondr 99.5 1.7E-13 3.7E-18 145.8 17.8 125 94-218 102-227 (615)
16 PRK11189 lipoprotein NlpI; Pro 99.5 1.5E-12 3.2E-17 126.5 17.7 104 116-219 62-166 (296)
17 KOG0547 Translocase of outer m 99.5 2.9E-12 6.3E-17 126.9 19.4 135 110-244 318-454 (606)
18 TIGR02552 LcrH_SycD type III s 99.5 1.2E-12 2.5E-17 111.4 14.2 103 117-219 16-119 (135)
19 KOG0545 Aryl-hydrocarbon recep 99.5 2.5E-12 5.4E-17 117.7 15.7 112 107-218 167-297 (329)
20 KOG4642 Chaperone-dependent E3 99.4 5.6E-13 1.2E-17 121.5 9.7 115 114-228 6-127 (284)
21 PRK15363 pathogenicity island 99.4 7.2E-12 1.6E-16 108.9 15.8 102 117-218 34-136 (157)
22 KOG0376 Serine-threonine phosp 99.4 2.7E-13 5.7E-18 134.7 6.3 113 117-229 3-117 (476)
23 KOG0624 dsRNA-activated protei 99.3 1.4E-11 3E-16 117.7 13.5 104 116-219 36-140 (504)
24 TIGR00990 3a0801s09 mitochondr 99.3 3.4E-11 7.3E-16 128.3 18.1 129 116-244 329-459 (615)
25 PRK10370 formate-dependent nit 99.3 3.5E-11 7.5E-16 110.1 15.7 104 116-219 71-178 (198)
26 KOG4626 O-linked N-acetylgluco 99.3 5E-12 1.1E-16 128.2 10.4 129 118-246 252-382 (966)
27 KOG4626 O-linked N-acetylgluco 99.3 2.4E-11 5.2E-16 123.3 12.7 100 119-218 389-489 (966)
28 PF13414 TPR_11: TPR repeat; P 99.2 2.7E-11 5.8E-16 91.1 8.1 66 151-216 3-69 (69)
29 KOG0553 TPR repeat-containing 99.2 1E-10 2.2E-15 110.4 13.6 96 151-246 81-177 (304)
30 KOG1126 DNA-binding cell divis 99.2 3E-11 6.5E-16 123.7 10.5 139 108-246 411-551 (638)
31 PRK12370 invasion protein regu 99.2 1.4E-09 2.9E-14 114.7 23.4 123 121-243 341-466 (553)
32 TIGR02795 tol_pal_ybgF tol-pal 99.2 3.2E-10 7E-15 93.4 14.6 102 118-219 2-110 (119)
33 PRK10370 formate-dependent nit 99.2 3.3E-10 7.2E-15 103.6 15.3 116 131-246 52-172 (198)
34 PF13414 TPR_11: TPR repeat; P 99.2 5.1E-11 1.1E-15 89.6 8.1 66 117-182 2-69 (69)
35 PRK09782 bacteriophage N4 rece 99.2 3.9E-10 8.4E-15 124.9 18.3 122 125-246 583-705 (987)
36 cd00189 TPR Tetratricopeptide 99.2 2.2E-10 4.8E-15 87.8 11.8 98 120-217 2-100 (100)
37 KOG1155 Anaphase-promoting com 99.2 6.6E-10 1.4E-14 109.9 17.6 124 123-246 335-460 (559)
38 PRK15359 type III secretion sy 99.2 3.8E-10 8.3E-15 97.9 13.8 106 138-246 13-120 (144)
39 KOG4555 TPR repeat-containing 99.2 5.2E-10 1.1E-14 93.5 13.6 104 114-217 39-147 (175)
40 PRK02603 photosystem I assembl 99.2 7.1E-10 1.5E-14 98.9 15.5 105 114-218 31-153 (172)
41 KOG1125 TPR repeat-containing 99.2 1E-10 2.2E-15 118.3 9.3 114 120-233 432-557 (579)
42 PRK12370 invasion protein regu 99.2 8.3E-10 1.8E-14 116.3 16.7 88 132-219 318-406 (553)
43 TIGR02521 type_IV_pilW type IV 99.1 3E-09 6.5E-14 96.5 17.8 126 117-242 30-159 (234)
44 KOG1155 Anaphase-promoting com 99.1 1.1E-09 2.4E-14 108.4 15.6 128 119-246 365-494 (559)
45 KOG2076 RNA polymerase III tra 99.1 2.2E-09 4.7E-14 113.3 18.6 102 117-218 138-240 (895)
46 TIGR02521 type_IV_pilW type IV 99.1 1.3E-08 2.7E-13 92.4 21.5 127 118-244 65-195 (234)
47 PRK09782 bacteriophage N4 rece 99.1 4.2E-09 9E-14 116.8 21.6 102 118-219 609-711 (987)
48 PRK15179 Vi polysaccharide bio 99.1 2.6E-09 5.6E-14 114.3 19.1 132 115-246 83-216 (694)
49 CHL00033 ycf3 photosystem I as 99.1 2.5E-09 5.5E-14 94.9 15.8 104 115-218 32-153 (168)
50 COG3063 PilF Tfp pilus assembl 99.1 3.3E-09 7.2E-14 96.8 15.6 133 114-246 31-167 (250)
51 TIGR03302 OM_YfiO outer membra 99.1 9.7E-09 2.1E-13 95.7 18.5 102 118-219 33-149 (235)
52 PRK15174 Vi polysaccharide exp 99.1 5.9E-09 1.3E-13 111.9 18.9 127 119-245 247-379 (656)
53 TIGR02552 LcrH_SycD type III s 99.1 3.9E-09 8.5E-14 89.5 13.8 107 139-245 4-112 (135)
54 PF12895 Apc3: Anaphase-promot 99.1 6.1E-10 1.3E-14 87.3 7.9 80 131-211 2-84 (84)
55 PRK15174 Vi polysaccharide exp 99.1 3.8E-09 8.3E-14 113.4 16.7 122 123-244 217-344 (656)
56 KOG0550 Molecular chaperone (D 99.1 1.8E-09 3.9E-14 105.6 12.5 132 115-246 200-349 (486)
57 PRK11189 lipoprotein NlpI; Pro 99.0 3.5E-09 7.6E-14 102.8 14.5 113 133-245 41-159 (296)
58 KOG1126 DNA-binding cell divis 99.0 2.1E-09 4.6E-14 110.3 12.5 99 120-218 457-556 (638)
59 PLN02789 farnesyltranstransfer 99.0 1.4E-08 3E-13 99.6 17.7 117 128-244 47-168 (320)
60 PRK10803 tol-pal system protei 99.0 1.1E-08 2.3E-13 97.7 15.6 101 119-219 143-251 (263)
61 PF13432 TPR_16: Tetratricopep 99.0 1.8E-09 3.9E-14 80.1 7.6 63 156-218 2-64 (65)
62 PRK15331 chaperone protein Sic 99.0 1.3E-08 2.8E-13 89.1 13.8 105 110-218 32-137 (165)
63 TIGR03302 OM_YfiO outer membra 99.0 1.8E-08 3.9E-13 93.9 15.6 127 119-245 71-230 (235)
64 PLN02789 farnesyltranstransfer 99.0 1.1E-08 2.4E-13 100.3 14.4 114 114-227 67-185 (320)
65 PRK11788 tetratricopeptide rep 99.0 2.5E-08 5.5E-13 99.5 17.2 124 120-243 182-307 (389)
66 PRK15179 Vi polysaccharide bio 99.0 1.1E-08 2.4E-13 109.5 15.4 127 116-247 118-245 (694)
67 PF13429 TPR_15: Tetratricopep 99.0 3.7E-09 8.1E-14 101.5 10.5 122 118-239 146-269 (280)
68 COG5010 TadD Flp pilus assembl 98.9 2E-08 4.3E-13 93.3 13.9 114 120-233 102-217 (257)
69 PRK11788 tetratricopeptide rep 98.9 1.2E-07 2.5E-12 94.8 20.7 127 118-244 141-275 (389)
70 PF13432 TPR_16: Tetratricopep 98.9 4.3E-09 9.4E-14 78.1 7.3 63 123-185 2-65 (65)
71 TIGR02917 PEP_TPR_lipo putativ 98.9 4.3E-08 9.3E-13 106.5 17.9 127 116-242 123-251 (899)
72 COG3063 PilF Tfp pilus assembl 98.9 3.7E-08 8E-13 90.1 13.8 131 116-246 67-201 (250)
73 KOG1173 Anaphase-promoting com 98.9 1.1E-08 2.4E-13 103.4 11.5 107 121-227 417-532 (611)
74 PRK11447 cellulose synthase su 98.9 5.1E-08 1.1E-12 111.1 18.1 123 122-244 355-521 (1157)
75 PRK11447 cellulose synthase su 98.9 4.2E-08 9.1E-13 111.8 16.9 121 123-243 274-410 (1157)
76 PRK10049 pgaA outer membrane p 98.9 5.2E-08 1.1E-12 106.5 16.7 101 118-219 49-150 (765)
77 TIGR02917 PEP_TPR_lipo putativ 98.9 5.6E-08 1.2E-12 105.6 16.9 126 120-246 738-865 (899)
78 PF13512 TPR_18: Tetratricopep 98.9 6.1E-08 1.3E-12 83.1 13.5 102 118-219 10-133 (142)
79 PRK15363 pathogenicity island 98.8 1.3E-07 2.7E-12 82.5 14.1 102 146-247 28-132 (157)
80 COG1729 Uncharacterized protei 98.8 1.2E-07 2.5E-12 89.2 14.6 102 119-220 142-250 (262)
81 KOG1128 Uncharacterized conser 98.8 1.9E-08 4.2E-13 104.3 10.0 125 122-246 489-615 (777)
82 PF13371 TPR_9: Tetratricopept 98.8 4.1E-08 9E-13 74.3 9.2 59 160-218 4-62 (73)
83 PRK10049 pgaA outer membrane p 98.8 1.1E-07 2.4E-12 104.0 16.1 102 119-220 360-462 (765)
84 PRK10866 outer membrane biogen 98.8 9.5E-07 2.1E-11 83.4 19.6 102 118-219 32-158 (243)
85 PF14559 TPR_19: Tetratricopep 98.8 2.7E-08 5.9E-13 74.3 7.1 64 129-192 2-66 (68)
86 PF13371 TPR_9: Tetratricopept 98.8 4.5E-08 9.7E-13 74.1 8.4 69 125-193 2-71 (73)
87 KOG1125 TPR repeat-containing 98.7 9.8E-08 2.1E-12 97.0 12.9 132 115-246 316-492 (579)
88 PF13525 YfiO: Outer membrane 98.7 5.4E-07 1.2E-11 82.7 16.9 103 117-219 4-124 (203)
89 KOG4234 TPR repeat-containing 98.7 1.7E-06 3.7E-11 77.7 18.2 117 121-247 75-197 (271)
90 KOG2003 TPR repeat-containing 98.7 2.8E-06 6.2E-11 84.2 21.2 126 119-244 559-686 (840)
91 COG4783 Putative Zn-dependent 98.7 8.4E-07 1.8E-11 88.9 17.6 124 117-240 305-430 (484)
92 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 6.9E-08 1.5E-12 96.8 9.8 71 111-181 68-142 (453)
93 PF09976 TPR_21: Tetratricopep 98.7 1.7E-06 3.7E-11 74.9 16.9 130 113-242 6-142 (145)
94 PF09976 TPR_21: Tetratricopep 98.7 2.9E-07 6.3E-12 79.7 11.8 94 118-212 48-145 (145)
95 PLN03088 SGT1, suppressor of 98.7 1.9E-07 4.2E-12 93.0 12.0 83 118-200 36-119 (356)
96 PF12688 TPR_5: Tetratrico pep 98.6 6.1E-07 1.3E-11 75.3 12.7 95 119-213 2-103 (120)
97 CHL00033 ycf3 photosystem I as 98.6 4.2E-07 9.2E-12 80.6 12.4 105 125-229 6-117 (168)
98 PRK14574 hmsH outer membrane p 98.6 1.4E-06 3.1E-11 95.2 18.4 127 118-244 34-162 (822)
99 PF13429 TPR_15: Tetratricopep 98.6 4.7E-07 1E-11 86.9 12.7 129 118-246 110-242 (280)
100 COG4235 Cytochrome c biogenesi 98.6 4.1E-07 8.8E-12 86.5 11.9 105 115-219 153-261 (287)
101 COG4783 Putative Zn-dependent 98.6 1.6E-06 3.4E-11 87.0 16.4 102 117-218 339-441 (484)
102 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 3.6E-07 7.7E-12 91.7 11.9 68 147-214 70-141 (453)
103 cd00189 TPR Tetratricopeptide 98.6 1.1E-06 2.4E-11 66.8 12.0 67 153-219 2-68 (100)
104 KOG4162 Predicted calmodulin-b 98.6 3.2E-07 6.9E-12 95.9 11.4 100 119-218 685-787 (799)
105 PRK02603 photosystem I assembl 98.6 1.9E-06 4.1E-11 76.8 14.6 79 141-219 22-106 (172)
106 PF06552 TOM20_plant: Plant sp 98.6 9.3E-07 2E-11 78.3 12.2 87 134-220 7-115 (186)
107 KOG1174 Anaphase-promoting com 98.6 2.1E-06 4.5E-11 84.5 15.6 127 118-244 334-497 (564)
108 PF14559 TPR_19: Tetratricopep 98.6 3.1E-07 6.6E-12 68.5 7.6 59 161-219 1-59 (68)
109 KOG1310 WD40 repeat protein [G 98.5 2.3E-07 4.9E-12 93.4 8.7 108 112-219 368-479 (758)
110 TIGR00540 hemY_coli hemY prote 98.5 1.7E-06 3.6E-11 87.9 15.2 128 115-242 260-394 (409)
111 PRK10153 DNA-binding transcrip 98.5 2.5E-06 5.3E-11 89.0 16.4 125 117-241 338-476 (517)
112 COG4785 NlpI Lipoprotein NlpI, 98.5 7.2E-07 1.6E-11 81.0 10.7 105 116-220 63-168 (297)
113 KOG2002 TPR-containing nuclear 98.5 2.4E-06 5.2E-11 91.4 16.0 96 124-219 652-750 (1018)
114 TIGR02795 tol_pal_ybgF tol-pal 98.5 2.1E-06 4.6E-11 70.3 12.6 93 151-243 2-101 (119)
115 COG2956 Predicted N-acetylgluc 98.5 1E-05 2.2E-10 77.6 18.2 122 119-240 142-271 (389)
116 KOG2003 TPR repeat-containing 98.5 2.9E-05 6.3E-10 77.3 21.9 103 117-219 489-592 (840)
117 KOG1840 Kinesin light chain [C 98.5 4.3E-06 9.3E-11 86.3 16.6 163 115-277 196-399 (508)
118 KOG0543 FKBP-type peptidyl-pro 98.5 1.8E-06 4E-11 85.0 12.7 97 119-215 258-356 (397)
119 PRK10747 putative protoheme IX 98.5 4.5E-06 9.8E-11 84.5 15.7 128 113-242 258-385 (398)
120 cd05804 StaR_like StaR_like; a 98.4 2.4E-06 5.2E-11 84.3 13.2 99 118-216 114-217 (355)
121 KOG2076 RNA polymerase III tra 98.4 6.7E-06 1.4E-10 87.5 16.8 101 118-218 173-274 (895)
122 PF13424 TPR_12: Tetratricopep 98.4 3.1E-07 6.7E-12 70.5 5.1 64 151-214 5-75 (78)
123 KOG1840 Kinesin light chain [C 98.4 5.1E-06 1.1E-10 85.8 15.5 99 117-215 240-355 (508)
124 COG5010 TadD Flp pilus assembl 98.4 4.8E-06 1E-10 77.6 13.3 98 122-219 70-168 (257)
125 KOG3060 Uncharacterized conser 98.4 1.5E-05 3.2E-10 74.2 15.9 125 120-244 88-217 (289)
126 PRK11906 transcriptional regul 98.4 3.7E-06 8E-11 84.6 12.6 97 132-228 318-415 (458)
127 smart00727 STI1 Heat shock cha 98.4 3.2E-07 7E-12 61.9 3.5 40 349-388 1-41 (41)
128 TIGR00540 hemY_coli hemY prote 98.4 2.7E-05 5.8E-10 79.1 19.0 132 115-246 81-215 (409)
129 KOG0546 HSP90 co-chaperone CPR 98.3 1.4E-06 3E-11 84.3 8.0 107 113-219 217-343 (372)
130 PRK14720 transcript cleavage f 98.3 1.4E-05 3.1E-10 87.2 16.7 126 116-244 29-175 (906)
131 cd05804 StaR_like StaR_like; a 98.3 1E-05 2.3E-10 79.7 14.7 126 120-245 45-213 (355)
132 KOG4162 Predicted calmodulin-b 98.3 7.3E-06 1.6E-10 85.9 13.9 124 118-241 650-777 (799)
133 PF13424 TPR_12: Tetratricopep 98.3 2.1E-06 4.6E-11 65.8 7.6 66 115-180 2-75 (78)
134 PRK11906 transcriptional regul 98.3 1.4E-05 3.1E-10 80.5 15.1 121 120-240 257-394 (458)
135 PRK14574 hmsH outer membrane p 98.3 1.1E-05 2.3E-10 88.4 15.2 96 122-218 106-202 (822)
136 KOG1156 N-terminal acetyltrans 98.3 2.9E-05 6.3E-10 80.2 16.8 118 119-236 8-127 (700)
137 KOG1129 TPR repeat-containing 98.3 2.9E-06 6.3E-11 81.3 8.7 117 123-239 329-450 (478)
138 KOG4648 Uncharacterized conser 98.3 2.9E-06 6.4E-11 81.7 8.7 93 154-246 100-193 (536)
139 PRK10803 tol-pal system protei 98.3 1.4E-05 3E-10 76.3 13.4 97 150-246 141-245 (263)
140 PRK10747 putative protoheme IX 98.3 6.4E-05 1.4E-09 76.1 18.9 133 114-246 80-215 (398)
141 KOG1173 Anaphase-promoting com 98.3 7.6E-06 1.7E-10 83.3 11.7 120 124-243 386-514 (611)
142 PRK10153 DNA-binding transcrip 98.2 1.7E-05 3.7E-10 82.7 14.2 100 134-234 400-504 (517)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 1.3E-05 2.8E-10 80.6 12.5 95 122-216 204-299 (395)
144 KOG2002 TPR-containing nuclear 98.2 3.1E-05 6.8E-10 83.1 15.0 114 118-231 270-389 (1018)
145 COG4235 Cytochrome c biogenesi 98.2 5.3E-05 1.2E-09 72.3 14.4 114 133-246 137-255 (287)
146 PF03704 BTAD: Bacterial trans 98.1 0.00015 3.2E-09 62.5 15.9 98 116-213 4-124 (146)
147 PF12569 NARP1: NMDA receptor- 98.1 9.2E-05 2E-09 77.1 16.5 67 152-218 195-261 (517)
148 COG4700 Uncharacterized protei 98.1 0.0004 8.8E-09 62.1 17.9 118 119-236 90-211 (251)
149 COG2956 Predicted N-acetylgluc 98.1 0.00012 2.5E-09 70.4 15.3 118 115-232 177-296 (389)
150 KOG0495 HAT repeat protein [RN 98.1 0.00014 3E-09 75.5 16.3 121 126-246 626-747 (913)
151 PF12895 Apc3: Anaphase-promot 98.1 1.2E-05 2.7E-10 62.6 7.0 78 164-242 2-82 (84)
152 KOG3060 Uncharacterized conser 98.1 0.00013 2.8E-09 68.0 14.5 96 123-218 125-224 (289)
153 KOG1174 Anaphase-promoting com 98.0 6.3E-05 1.4E-09 74.3 11.4 107 120-226 234-376 (564)
154 KOG1127 TPR repeat-containing 98.0 0.00026 5.6E-09 76.4 16.8 100 120-219 4-108 (1238)
155 PF14938 SNAP: Soluble NSF att 98.0 7.9E-05 1.7E-09 71.9 12.0 103 113-216 30-146 (282)
156 PF13431 TPR_17: Tetratricopep 98.0 9E-06 1.9E-10 52.5 3.6 32 174-205 2-33 (34)
157 KOG1128 Uncharacterized conser 98.0 3.4E-05 7.3E-10 80.7 9.8 124 118-241 424-576 (777)
158 PF00515 TPR_1: Tetratricopept 98.0 1.8E-05 3.8E-10 50.7 4.9 32 186-217 2-33 (34)
159 KOG1127 TPR repeat-containing 98.0 4E-05 8.6E-10 82.4 10.2 101 118-218 562-663 (1238)
160 COG4105 ComL DNA uptake lipopr 98.0 0.001 2.2E-08 62.4 18.5 102 118-219 34-150 (254)
161 PF00515 TPR_1: Tetratricopept 98.0 1.5E-05 3.2E-10 51.0 4.4 34 151-184 1-34 (34)
162 KOG1156 N-terminal acetyltrans 97.9 0.0005 1.1E-08 71.4 17.6 96 120-215 77-173 (700)
163 PF12688 TPR_5: Tetratrico pep 97.9 0.00016 3.5E-09 60.7 10.9 67 152-218 2-71 (120)
164 KOG0551 Hsp90 co-chaperone CNS 97.9 0.00051 1.1E-08 66.3 15.2 69 150-218 80-152 (390)
165 PF13428 TPR_14: Tetratricopep 97.9 3.3E-05 7.2E-10 52.7 5.3 42 152-193 2-43 (44)
166 PF13525 YfiO: Outer membrane 97.8 0.00085 1.8E-08 61.5 15.6 101 119-219 43-175 (203)
167 PF04733 Coatomer_E: Coatomer 97.8 0.00011 2.5E-09 71.1 10.2 100 120-219 133-235 (290)
168 PF12968 DUF3856: Domain of Un 97.8 0.00055 1.2E-08 56.7 12.5 95 120-214 11-129 (144)
169 PF14938 SNAP: Soluble NSF att 97.8 0.00027 5.8E-09 68.2 12.3 102 116-217 112-228 (282)
170 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.0005 1.1E-08 69.3 14.5 106 130-237 181-287 (395)
171 PRK10866 outer membrane biogen 97.8 0.0014 3.1E-08 61.8 16.8 101 119-219 70-209 (243)
172 PRK14720 transcript cleavage f 97.8 0.00013 2.9E-09 79.8 10.7 98 119-217 66-181 (906)
173 COG1729 Uncharacterized protei 97.8 0.00036 7.8E-09 65.9 12.2 95 152-246 142-243 (262)
174 KOG1129 TPR repeat-containing 97.7 0.00028 6E-09 68.0 11.1 96 123-218 228-323 (478)
175 KOG4555 TPR repeat-containing 97.7 0.00088 1.9E-08 56.6 12.6 62 157-218 49-110 (175)
176 PF07719 TPR_2: Tetratricopept 97.7 7.9E-05 1.7E-09 47.3 4.6 31 153-183 3-33 (34)
177 PF07719 TPR_2: Tetratricopept 97.7 0.0001 2.2E-09 46.8 5.1 34 185-218 1-34 (34)
178 PRK10941 hypothetical protein; 97.7 0.00043 9.4E-09 66.2 11.5 77 151-227 181-257 (269)
179 PF13431 TPR_17: Tetratricopep 97.7 4.5E-05 9.8E-10 49.2 3.2 32 140-171 1-33 (34)
180 PF15015 NYD-SP12_N: Spermatog 97.6 0.00031 6.7E-09 69.6 10.0 95 118-212 176-289 (569)
181 KOG4642 Chaperone-dependent E3 97.6 0.00016 3.4E-09 66.9 6.4 75 154-228 13-88 (284)
182 PF04733 Coatomer_E: Coatomer 97.6 0.0012 2.5E-08 64.1 12.9 96 124-219 171-270 (290)
183 PRK15331 chaperone protein Sic 97.6 0.00098 2.1E-08 58.6 11.0 97 150-246 36-133 (165)
184 KOG3785 Uncharacterized conser 97.6 0.0012 2.6E-08 64.3 12.4 95 124-218 63-184 (557)
185 PF12569 NARP1: NMDA receptor- 97.5 0.0036 7.9E-08 65.3 16.9 99 117-215 193-292 (517)
186 COG0484 DnaJ DnaJ-class molecu 97.5 6.9E-05 1.5E-09 74.0 3.6 31 252-282 41-71 (371)
187 KOG2376 Signal recognition par 97.5 0.0034 7.3E-08 64.8 15.5 124 119-246 13-138 (652)
188 KOG4151 Myosin assembly protei 97.5 0.00045 9.7E-09 73.2 9.1 108 111-218 46-160 (748)
189 KOG1130 Predicted G-alpha GTPa 97.5 0.001 2.2E-08 65.9 10.8 63 152-214 196-264 (639)
190 KOG0376 Serine-threonine phosp 97.4 0.0003 6.6E-09 70.9 7.1 94 151-244 4-98 (476)
191 KOG1915 Cell cycle control pro 97.4 0.005 1.1E-07 62.2 15.3 127 118-244 73-200 (677)
192 COG3071 HemY Uncharacterized e 97.4 0.0052 1.1E-07 60.7 14.7 125 110-236 255-379 (400)
193 KOG0495 HAT repeat protein [RN 97.3 0.0042 9.1E-08 64.8 13.9 99 121-219 654-753 (913)
194 KOG3785 Uncharacterized conser 97.3 0.0025 5.4E-08 62.2 11.4 86 126-211 30-117 (557)
195 PF13428 TPR_14: Tetratricopep 97.3 0.00045 9.8E-09 47.0 4.6 34 186-219 2-35 (44)
196 COG0457 NrfG FOG: TPR repeat [ 97.3 0.018 3.8E-07 49.8 15.7 98 120-217 97-199 (291)
197 PF05843 Suf: Suppressor of fo 97.3 0.0064 1.4E-07 58.6 13.9 123 121-243 4-132 (280)
198 KOG2376 Signal recognition par 97.2 0.0088 1.9E-07 61.8 15.1 90 122-214 83-204 (652)
199 KOG4507 Uncharacterized conser 97.2 0.0013 2.8E-08 67.7 8.6 96 124-219 613-710 (886)
200 PLN03218 maturation of RBCL 1; 97.2 0.014 3.1E-07 66.0 17.8 91 123-213 547-642 (1060)
201 PF13181 TPR_8: Tetratricopept 97.2 0.0006 1.3E-08 43.3 4.0 31 186-216 2-32 (34)
202 COG3071 HemY Uncharacterized e 97.2 0.031 6.8E-07 55.3 17.6 132 115-246 81-215 (400)
203 KOG1130 Predicted G-alpha GTPa 97.2 0.0017 3.6E-08 64.5 8.7 95 120-214 237-344 (639)
204 COG2976 Uncharacterized protei 97.2 0.0068 1.5E-07 54.6 11.7 106 118-225 89-199 (207)
205 KOG4340 Uncharacterized conser 97.1 0.0014 3E-08 62.6 7.6 92 118-209 144-265 (459)
206 PLN03218 maturation of RBCL 1; 97.1 0.018 4E-07 65.1 17.9 84 128-211 624-710 (1060)
207 PF13512 TPR_18: Tetratricopep 97.1 0.004 8.6E-08 53.6 9.7 70 150-219 9-81 (142)
208 COG4785 NlpI Lipoprotein NlpI, 97.1 0.0023 4.9E-08 58.7 8.4 71 150-220 64-134 (297)
209 COG0457 NrfG FOG: TPR repeat [ 97.1 0.04 8.6E-07 47.6 16.4 99 118-216 59-161 (291)
210 PF06552 TOM20_plant: Plant sp 97.1 0.013 2.9E-07 52.2 13.1 107 167-273 7-135 (186)
211 PF13181 TPR_8: Tetratricopept 97.1 0.0009 2E-08 42.4 4.2 34 151-184 1-34 (34)
212 COG4700 Uncharacterized protei 97.1 0.073 1.6E-06 47.9 17.4 95 124-218 62-157 (251)
213 KOG2796 Uncharacterized conser 97.1 0.0098 2.1E-07 56.1 12.1 101 120-220 214-321 (366)
214 PF14853 Fis1_TPR_C: Fis1 C-te 97.0 0.0039 8.4E-08 44.4 7.1 36 187-222 3-38 (53)
215 COG3118 Thioredoxin domain-con 97.0 0.034 7.4E-07 53.3 15.1 99 119-217 135-268 (304)
216 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0043 9.3E-08 44.2 6.5 42 152-193 2-43 (53)
217 KOG1915 Cell cycle control pro 96.9 0.023 5E-07 57.5 13.8 129 118-246 404-535 (677)
218 PLN03081 pentatricopeptide (PP 96.9 0.01 2.2E-07 64.5 12.5 90 150-242 359-450 (697)
219 PLN03081 pentatricopeptide (PP 96.9 0.014 3E-07 63.5 13.5 122 120-243 292-416 (697)
220 PF10300 DUF3808: Protein of u 96.8 0.0098 2.1E-07 61.6 11.2 80 121-201 270-356 (468)
221 PF04781 DUF627: Protein of un 96.8 0.0089 1.9E-07 49.1 8.5 92 124-215 2-108 (111)
222 PTZ00009 heat shock 70 kDa pro 96.8 0.015 3.3E-07 62.7 12.8 16 305-320 620-635 (653)
223 KOG2053 Mitochondrial inherita 96.8 0.034 7.5E-07 60.0 14.8 95 125-219 16-111 (932)
224 KOG4340 Uncharacterized conser 96.7 0.0089 1.9E-07 57.2 8.6 85 127-211 19-104 (459)
225 PRK10941 hypothetical protein; 96.6 0.028 6E-07 53.9 11.7 78 119-196 182-260 (269)
226 KOG1941 Acetylcholine receptor 96.6 0.016 3.6E-07 56.8 10.0 123 120-242 124-270 (518)
227 PF03704 BTAD: Bacterial trans 96.6 0.02 4.2E-07 49.2 9.6 62 118-179 62-124 (146)
228 KOG1585 Protein required for f 96.5 0.13 2.9E-06 48.1 15.2 102 117-218 30-143 (308)
229 COG2912 Uncharacterized conser 96.5 0.015 3.3E-07 55.1 9.4 78 150-227 180-257 (269)
230 PRK04841 transcriptional regul 96.5 0.065 1.4E-06 59.7 16.0 98 118-215 491-603 (903)
231 KOG0545 Aryl-hydrocarbon recep 96.5 0.01 2.2E-07 55.3 7.9 67 120-186 232-299 (329)
232 COG4976 Predicted methyltransf 96.5 0.0036 7.8E-08 57.8 4.7 57 162-218 6-62 (287)
233 PRK04841 transcriptional regul 96.4 0.1 2.2E-06 58.2 16.8 95 120-214 454-560 (903)
234 PF13176 TPR_7: Tetratricopept 96.4 0.0065 1.4E-07 39.4 4.2 29 187-215 1-29 (36)
235 KOG3081 Vesicle coat complex C 96.4 0.13 2.7E-06 48.8 14.1 97 121-218 140-240 (299)
236 PLN03077 Protein ECB2; Provisi 96.4 0.073 1.6E-06 59.3 15.1 111 118-229 554-668 (857)
237 KOG3824 Huntingtin interacting 96.3 0.044 9.6E-07 52.8 10.9 84 111-194 109-193 (472)
238 PF13174 TPR_6: Tetratricopept 96.3 0.0078 1.7E-07 37.5 4.2 30 154-183 3-32 (33)
239 KOG3824 Huntingtin interacting 96.3 0.017 3.7E-07 55.5 8.1 59 161-219 126-184 (472)
240 smart00028 TPR Tetratricopepti 96.3 0.0067 1.5E-07 36.2 3.7 30 153-182 3-32 (34)
241 KOG4814 Uncharacterized conser 96.3 0.046 1E-06 57.1 11.6 106 110-215 345-458 (872)
242 KOG1586 Protein required for f 96.2 0.093 2E-06 48.8 12.3 101 118-218 113-228 (288)
243 PF13174 TPR_6: Tetratricopept 96.2 0.0066 1.4E-07 37.8 3.6 33 186-218 1-33 (33)
244 PLN03077 Protein ECB2; Provisi 96.2 0.084 1.8E-06 58.8 14.4 116 123-242 529-649 (857)
245 smart00028 TPR Tetratricopepti 96.1 0.0072 1.6E-07 36.1 3.3 32 186-217 2-33 (34)
246 PF13176 TPR_7: Tetratricopept 96.0 0.013 2.8E-07 38.0 4.3 28 153-180 1-28 (36)
247 PF14561 TPR_20: Tetratricopep 96.0 0.073 1.6E-06 42.3 9.4 49 170-218 7-55 (90)
248 KOG4507 Uncharacterized conser 96.0 0.15 3.3E-06 53.0 13.6 96 123-218 217-316 (886)
249 PF14561 TPR_20: Tetratricopep 95.9 0.079 1.7E-06 42.1 9.2 73 137-209 7-82 (90)
250 KOG1941 Acetylcholine receptor 95.8 0.034 7.3E-07 54.7 7.8 68 151-218 83-155 (518)
251 KOG2471 TPR repeat-containing 95.8 0.02 4.4E-07 58.1 6.5 110 118-227 240-378 (696)
252 KOG1586 Protein required for f 95.8 0.43 9.3E-06 44.5 14.4 130 116-246 32-182 (288)
253 KOG0530 Protein farnesyltransf 95.8 0.74 1.6E-05 43.7 16.1 113 128-240 53-169 (318)
254 KOG2396 HAT (Half-A-TPR) repea 95.7 0.22 4.8E-06 50.9 13.5 85 135-219 88-174 (568)
255 PF10300 DUF3808: Protein of u 95.7 0.24 5.2E-06 51.4 14.1 88 131-218 246-338 (468)
256 PF10602 RPN7: 26S proteasome 95.7 0.19 4.1E-06 45.1 11.6 97 119-215 37-143 (177)
257 COG4105 ComL DNA uptake lipopr 95.6 1 2.2E-05 42.5 16.7 99 120-218 73-200 (254)
258 PF09986 DUF2225: Uncharacteri 95.6 0.16 3.4E-06 47.0 11.1 90 127-216 86-196 (214)
259 COG2976 Uncharacterized protei 95.4 0.65 1.4E-05 42.1 13.8 94 121-215 56-156 (207)
260 COG4976 Predicted methyltransf 95.3 0.028 6.1E-07 52.0 5.2 60 126-185 3-63 (287)
261 KOG3364 Membrane protein invol 95.3 0.37 8E-06 41.1 11.4 76 150-225 31-111 (149)
262 KOG2610 Uncharacterized conser 95.3 0.3 6.5E-06 47.8 12.2 98 121-218 106-208 (491)
263 KOG0712 Molecular chaperone (D 95.2 0.013 2.9E-07 57.3 2.9 28 254-281 40-67 (337)
264 PF05843 Suf: Suppressor of fo 95.1 0.36 7.8E-06 46.5 12.5 99 120-218 37-140 (280)
265 PF04184 ST7: ST7 protein; In 95.0 0.31 6.7E-06 50.0 12.0 90 125-214 230-324 (539)
266 PF10579 Rapsyn_N: Rapsyn N-te 95.0 0.19 4E-06 38.7 7.9 65 116-180 4-72 (80)
267 KOG3364 Membrane protein invol 94.9 0.19 4.2E-06 42.8 8.6 74 119-192 33-112 (149)
268 KOG2471 TPR repeat-containing 94.9 0.035 7.6E-07 56.4 4.9 79 119-197 284-381 (696)
269 COG3898 Uncharacterized membra 94.9 0.35 7.7E-06 48.2 11.6 101 126-227 196-305 (531)
270 PF09613 HrpB1_HrpK: Bacterial 94.9 2.4 5.2E-05 37.3 15.6 108 117-225 9-117 (160)
271 KOG2796 Uncharacterized conser 94.8 0.63 1.4E-05 44.2 12.5 101 122-222 181-289 (366)
272 KOG1070 rRNA processing protei 94.7 0.81 1.8E-05 52.2 15.1 86 132-217 1511-1596(1710)
273 COG2912 Uncharacterized conser 94.7 0.13 2.8E-06 48.9 7.9 73 123-195 186-259 (269)
274 PF13374 TPR_10: Tetratricopep 94.4 0.096 2.1E-06 34.2 4.6 30 151-180 2-31 (42)
275 KOG1924 RhoA GTPase effector D 94.3 7.8 0.00017 42.0 20.4 13 381-393 697-709 (1102)
276 KOG1585 Protein required for f 93.9 0.82 1.8E-05 43.0 11.0 93 119-211 72-176 (308)
277 PF04184 ST7: ST7 protein; In 93.6 1.3 2.9E-05 45.6 12.9 85 133-227 215-304 (539)
278 PF12862 Apc5: Anaphase-promot 93.6 0.44 9.5E-06 37.9 7.9 56 162-217 9-73 (94)
279 PF02259 FAT: FAT domain; Int 93.5 1 2.2E-05 44.0 12.0 99 120-218 186-342 (352)
280 COG3947 Response regulator con 93.5 0.45 9.7E-06 45.7 8.7 61 151-211 279-339 (361)
281 PF02259 FAT: FAT domain; Int 93.4 3.1 6.7E-05 40.5 15.3 104 116-219 144-292 (352)
282 PF12862 Apc5: Anaphase-promot 93.2 0.46 1E-05 37.7 7.4 56 126-181 6-71 (94)
283 KOG1070 rRNA processing protei 93.2 2.8 6E-05 48.1 15.5 131 116-246 1528-1662(1710)
284 PF13374 TPR_10: Tetratricopep 93.1 0.22 4.8E-06 32.4 4.5 30 185-214 2-31 (42)
285 COG3629 DnrI DNA-binding trans 92.8 1.1 2.3E-05 43.2 10.5 65 150-214 152-216 (280)
286 KOG3081 Vesicle coat complex C 92.8 1.7 3.6E-05 41.4 11.4 97 123-219 174-276 (299)
287 cd02682 MIT_AAA_Arch MIT: doma 92.7 0.82 1.8E-05 35.0 7.7 31 117-147 5-35 (75)
288 PRK14284 chaperone protein Dna 92.6 0.25 5.5E-06 50.0 6.2 27 253-279 39-65 (391)
289 KOG2047 mRNA splicing factor [ 92.4 3.2 6.8E-05 44.1 13.7 126 118-245 349-504 (835)
290 PF10516 SHNi-TPR: SHNi-TPR; 92.3 0.21 4.5E-06 33.0 3.4 29 186-214 2-30 (38)
291 PF13281 DUF4071: Domain of un 92.3 1.6 3.5E-05 43.7 11.3 92 127-218 150-259 (374)
292 PRK14295 chaperone protein Dna 92.2 0.21 4.5E-06 50.5 5.1 27 253-279 47-73 (389)
293 KOG0713 Molecular chaperone (D 92.1 0.13 2.9E-06 50.0 3.3 43 237-279 15-80 (336)
294 PF13281 DUF4071: Domain of un 92.0 5.3 0.00011 40.1 14.6 64 121-184 182-259 (374)
295 KOG2053 Mitochondrial inherita 91.8 1.5 3.2E-05 48.0 11.0 98 120-218 45-143 (932)
296 PF08424 NRDE-2: NRDE-2, neces 91.8 6 0.00013 38.9 14.7 80 139-218 6-98 (321)
297 PHA02537 M terminase endonucle 91.3 0.27 5.9E-06 45.9 4.4 102 128-229 93-222 (230)
298 PF10516 SHNi-TPR: SHNi-TPR; 91.2 0.35 7.6E-06 31.9 3.6 30 152-181 2-31 (38)
299 PF08631 SPO22: Meiosis protei 90.9 7 0.00015 37.4 14.0 103 113-215 30-151 (278)
300 COG3898 Uncharacterized membra 90.8 3.5 7.5E-05 41.4 11.6 93 120-213 122-216 (531)
301 TIGR02561 HrpB1_HrpK type III 90.8 10 0.00023 33.0 13.9 107 118-225 10-117 (153)
302 KOG0546 HSP90 co-chaperone CPR 90.7 0.15 3.3E-06 50.0 2.2 75 120-194 277-352 (372)
303 KOG0686 COP9 signalosome, subu 90.7 1.3 2.9E-05 44.4 8.6 93 120-212 152-256 (466)
304 KOG1310 WD40 repeat protein [G 90.4 1.3 2.8E-05 45.8 8.5 89 151-239 374-466 (758)
305 KOG3617 WD40 and TPR repeat-co 90.4 9.5 0.00021 41.8 15.0 64 151-214 858-941 (1416)
306 KOG2047 mRNA splicing factor [ 90.3 21 0.00045 38.2 17.1 127 118-244 477-612 (835)
307 PRK13184 pknD serine/threonine 90.2 2.6 5.6E-05 47.3 11.4 96 123-219 480-586 (932)
308 COG3914 Spy Predicted O-linked 90.1 2.3 5.1E-05 44.5 10.2 95 124-218 73-175 (620)
309 KOG3617 WD40 and TPR repeat-co 90.0 2.7 5.9E-05 45.8 10.7 127 119-245 859-1035(1416)
310 KOG2610 Uncharacterized conser 89.9 1.9 4E-05 42.4 8.7 89 119-207 138-231 (491)
311 KOG2300 Uncharacterized conser 89.8 3.7 8.1E-05 42.2 11.1 94 118-215 367-475 (629)
312 PF04910 Tcf25: Transcriptiona 89.6 3.7 7.9E-05 41.1 11.0 73 145-217 33-135 (360)
313 PRK14286 chaperone protein Dna 89.6 0.36 7.8E-06 48.5 3.9 27 253-279 42-68 (372)
314 PF07720 TPR_3: Tetratricopept 89.1 1.2 2.7E-05 28.9 4.8 33 186-218 2-36 (36)
315 PF10602 RPN7: 26S proteasome 89.0 7.1 0.00015 34.9 11.5 66 151-216 36-104 (177)
316 PRK14281 chaperone protein Dna 89.0 0.86 1.9E-05 46.2 6.1 27 253-279 41-67 (397)
317 COG4941 Predicted RNA polymera 88.9 3.1 6.7E-05 40.9 9.4 86 134-219 312-399 (415)
318 PF10373 EST1_DNA_bind: Est1 D 88.8 1.5 3.3E-05 41.4 7.5 61 137-197 1-62 (278)
319 COG3914 Spy Predicted O-linked 88.4 16 0.00035 38.5 14.7 91 129-219 41-136 (620)
320 COG5191 Uncharacterized conser 88.2 0.98 2.1E-05 43.8 5.5 80 140-219 95-176 (435)
321 PRK14285 chaperone protein Dna 88.0 0.47 1E-05 47.6 3.5 27 253-279 41-67 (365)
322 PRK15180 Vi polysaccharide bio 87.8 4.7 0.0001 41.5 10.2 93 125-217 296-389 (831)
323 KOG0529 Protein geranylgeranyl 87.7 6.6 0.00014 39.6 11.1 91 132-222 89-187 (421)
324 COG0790 FOG: TPR repeat, SEL1 87.6 19 0.0004 34.3 14.3 95 120-216 111-222 (292)
325 PF09986 DUF2225: Uncharacteri 87.6 2.9 6.2E-05 38.7 8.2 78 116-193 116-208 (214)
326 PRK14277 chaperone protein Dna 87.5 0.66 1.4E-05 46.9 4.2 27 253-279 43-69 (386)
327 cd02683 MIT_1 MIT: domain cont 87.4 5.6 0.00012 30.5 8.4 27 119-145 7-33 (77)
328 KOG4814 Uncharacterized conser 87.1 3.4 7.3E-05 43.8 9.0 69 151-219 354-428 (872)
329 PF07079 DUF1347: Protein of u 87.1 13 0.00029 38.0 12.9 49 161-210 472-520 (549)
330 PRK14298 chaperone protein Dna 86.7 0.88 1.9E-05 45.8 4.6 27 253-279 42-68 (377)
331 COG3629 DnrI DNA-binding trans 86.5 5.1 0.00011 38.6 9.4 63 118-180 153-216 (280)
332 PF07079 DUF1347: Protein of u 86.4 5.7 0.00012 40.6 9.9 59 118-176 462-520 (549)
333 KOG0921 Dosage compensation co 86.3 1.1 2.5E-05 49.0 5.3 6 21-26 786-791 (1282)
334 cd02682 MIT_AAA_Arch MIT: doma 86.2 11 0.00025 28.7 9.4 17 203-219 31-47 (75)
335 smart00727 STI1 Heat shock cha 86.1 0.67 1.4E-05 30.8 2.3 33 342-377 3-40 (41)
336 COG4455 ImpE Protein of avirul 86.0 5.1 0.00011 37.2 8.7 63 124-186 7-70 (273)
337 PF14863 Alkyl_sulf_dimr: Alky 86.0 2.5 5.5E-05 36.4 6.4 47 119-165 71-118 (141)
338 PF07721 TPR_4: Tetratricopept 85.9 0.97 2.1E-05 26.8 2.7 22 187-208 3-24 (26)
339 PF11207 DUF2989: Protein of u 85.1 6.1 0.00013 36.1 8.7 55 150-205 140-198 (203)
340 KOG0921 Dosage compensation co 84.9 1.8 3.8E-05 47.6 5.8 9 272-280 1166-1174(1282)
341 PF04212 MIT: MIT (microtubule 84.6 2.8 6E-05 31.1 5.4 32 116-147 3-34 (69)
342 PF08424 NRDE-2: NRDE-2, neces 84.5 15 0.00032 36.1 12.0 81 134-214 47-131 (321)
343 cd02678 MIT_VPS4 MIT: domain c 84.3 9.1 0.0002 29.0 8.2 32 116-147 4-35 (75)
344 PF10952 DUF2753: Protein of u 84.0 13 0.00029 31.3 9.4 102 120-227 3-125 (140)
345 KOG3540 Beta amyloid precursor 84.0 27 0.00058 35.9 13.3 86 151-238 313-400 (615)
346 PF10255 Paf67: RNA polymerase 84.0 3.9 8.5E-05 41.4 7.7 98 120-217 124-231 (404)
347 KOG1839 Uncharacterized protei 84.0 9.8 0.00021 43.5 11.3 99 117-215 972-1087(1236)
348 COG5191 Uncharacterized conser 83.8 1.6 3.4E-05 42.5 4.5 73 118-190 107-181 (435)
349 KOG0530 Protein farnesyltransf 83.8 7.8 0.00017 37.0 9.0 86 133-218 93-180 (318)
350 PF12968 DUF3856: Domain of Un 83.7 25 0.00055 29.6 13.5 63 152-214 8-84 (144)
351 KOG0529 Protein geranylgeranyl 83.5 33 0.00071 34.7 13.7 113 120-232 30-159 (421)
352 PRK10767 chaperone protein Dna 82.7 1.9 4.1E-05 43.3 4.9 27 254-280 43-69 (371)
353 PF09613 HrpB1_HrpK: Bacterial 82.7 18 0.00038 31.9 10.3 74 151-224 10-83 (160)
354 KOG2396 HAT (Half-A-TPR) repea 82.7 7.8 0.00017 40.1 9.1 62 128-189 115-178 (568)
355 PF07721 TPR_4: Tetratricopept 82.6 1.7 3.6E-05 25.7 2.8 24 152-175 2-25 (26)
356 smart00745 MIT Microtubule Int 82.6 13 0.00029 28.0 8.6 32 116-147 6-37 (77)
357 KOG3807 Predicted membrane pro 82.4 37 0.0008 33.6 13.2 89 127-217 193-307 (556)
358 COG2909 MalT ATP-dependent tra 82.4 57 0.0012 36.2 15.9 97 119-215 416-527 (894)
359 PTZ00037 DnaJ_C chaperone prot 82.1 1.3 2.8E-05 45.3 3.5 25 256-280 65-89 (421)
360 TIGR03504 FimV_Cterm FimV C-te 82.0 5 0.00011 27.3 5.3 25 189-213 3-27 (44)
361 PRK14296 chaperone protein Dna 81.7 1.1 2.4E-05 45.0 2.8 27 253-279 41-67 (372)
362 PF15015 NYD-SP12_N: Spermatog 81.5 2.7 6E-05 42.4 5.3 56 123-178 233-289 (569)
363 COG4907 Predicted membrane pro 81.3 3.4 7.3E-05 42.0 5.9 46 166-211 490-535 (595)
364 COG5091 SGT1 Suppressor of G2 81.1 3 6.5E-05 39.7 5.2 108 126-233 3-127 (368)
365 PRK14287 chaperone protein Dna 81.1 1.8 3.9E-05 43.5 4.1 27 253-279 41-67 (371)
366 PRK14278 chaperone protein Dna 80.9 1.8 3.9E-05 43.6 4.0 28 253-280 40-67 (378)
367 cd02680 MIT_calpain7_2 MIT: do 80.5 3.3 7.2E-05 31.7 4.4 32 116-147 4-35 (75)
368 KOG1118 Lysophosphatidic acid 80.5 16 0.00036 35.3 9.9 77 170-246 91-168 (366)
369 PF04781 DUF627: Protein of un 80.4 29 0.00063 28.6 10.1 62 157-218 2-77 (111)
370 PRK14288 chaperone protein Dna 80.4 1.3 2.9E-05 44.4 2.8 27 253-279 41-67 (369)
371 cd02681 MIT_calpain7_1 MIT: do 80.4 4.2 9.1E-05 31.2 4.9 31 117-147 5-35 (76)
372 PRK14279 chaperone protein Dna 80.3 1.2 2.5E-05 45.2 2.4 27 253-279 47-73 (392)
373 PF06957 COPI_C: Coatomer (COP 80.2 17 0.00036 37.2 10.6 106 114-219 200-334 (422)
374 PRK14300 chaperone protein Dna 79.9 1.4 3.1E-05 44.2 2.9 26 254-279 41-66 (372)
375 COG4455 ImpE Protein of avirul 79.7 16 0.00034 34.1 9.2 61 159-219 9-69 (273)
376 PRK14297 chaperone protein Dna 79.5 2.6 5.5E-05 42.5 4.6 28 253-280 42-69 (380)
377 PF14863 Alkyl_sulf_dimr: Alky 79.5 6.2 0.00013 34.0 6.3 50 152-201 71-120 (141)
378 PF10255 Paf67: RNA polymerase 79.0 3.2 6.9E-05 42.1 5.0 58 155-213 126-192 (404)
379 cd02683 MIT_1 MIT: domain cont 79.0 27 0.00058 26.7 9.8 18 203-220 31-48 (77)
380 KOG2581 26S proteasome regulat 78.7 27 0.0006 35.3 11.2 70 150-219 208-281 (493)
381 PF09280 XPC-binding: XPC-bind 78.6 2.9 6.3E-05 30.4 3.4 34 356-389 5-43 (59)
382 PF08631 SPO22: Meiosis protei 78.3 23 0.00049 33.9 10.6 90 128-217 3-119 (278)
383 COG3947 Response regulator con 78.3 7.4 0.00016 37.7 6.9 57 121-177 282-339 (361)
384 KOG1550 Extracellular protein 78.2 24 0.00052 37.4 11.7 91 123-216 293-395 (552)
385 PF09670 Cas_Cas02710: CRISPR- 77.6 45 0.00098 33.6 12.9 63 118-180 131-198 (379)
386 PF07720 TPR_3: Tetratricopept 77.5 8.4 0.00018 24.9 5.0 29 154-182 4-34 (36)
387 cd02684 MIT_2 MIT: domain cont 77.5 8.7 0.00019 29.2 5.9 33 115-147 3-35 (75)
388 KOG0010 Ubiquitin-like protein 77.2 2.4 5.1E-05 43.5 3.5 41 343-385 159-199 (493)
389 KOG0718 Molecular chaperone (D 77.0 3.5 7.5E-05 42.1 4.5 32 248-279 45-76 (546)
390 cd02656 MIT MIT: domain contai 76.7 13 0.00028 28.0 6.7 33 115-147 3-35 (75)
391 PF10373 EST1_DNA_bind: Est1 D 76.7 10 0.00022 35.6 7.7 58 170-227 1-59 (278)
392 PF10579 Rapsyn_N: Rapsyn N-te 76.2 23 0.0005 27.4 7.8 53 157-209 12-67 (80)
393 PF11817 Foie-gras_1: Foie gra 75.2 12 0.00026 35.3 7.6 61 151-211 178-244 (247)
394 PF10858 DUF2659: Protein of u 74.9 60 0.0013 28.9 11.0 96 123-218 98-204 (220)
395 TIGR02349 DnaJ_bact chaperone 74.5 4.5 9.7E-05 40.3 4.7 26 254-279 38-63 (354)
396 PRK15180 Vi polysaccharide bio 74.4 7.8 0.00017 40.0 6.2 96 123-218 328-424 (831)
397 KOG1550 Extracellular protein 74.0 38 0.00082 35.9 11.8 95 122-218 248-361 (552)
398 COG4499 Predicted membrane pro 73.9 63 0.0014 32.5 12.1 53 150-207 280-335 (434)
399 KOG2561 Adaptor protein NUB1, 73.8 93 0.002 32.0 13.4 97 118-214 163-296 (568)
400 PF10345 Cohesin_load: Cohesin 73.8 97 0.0021 33.2 15.0 100 115-215 56-169 (608)
401 KOG1258 mRNA processing protei 73.7 1.1E+02 0.0023 32.6 14.4 121 126-246 263-394 (577)
402 KOG2041 WD40 repeat protein [G 73.2 83 0.0018 34.3 13.5 80 119-209 797-876 (1189)
403 PF11207 DUF2989: Protein of u 73.1 15 0.00032 33.7 7.2 52 120-172 143-199 (203)
404 PF11817 Foie-gras_1: Foie gra 73.0 35 0.00076 32.1 10.1 55 123-177 183-244 (247)
405 KOG2300 Uncharacterized conser 72.7 41 0.00089 34.9 10.8 94 116-209 44-151 (629)
406 COG0790 FOG: TPR repeat, SEL1 72.7 44 0.00095 31.7 11.0 80 135-218 172-270 (292)
407 PRK14294 chaperone protein Dna 72.4 4.6 9.9E-05 40.5 4.2 27 253-279 42-68 (366)
408 KOG1839 Uncharacterized protei 72.3 29 0.00063 39.9 10.6 98 116-214 930-1044(1236)
409 PF11846 DUF3366: Domain of un 71.5 25 0.00053 31.5 8.4 50 168-218 128-177 (193)
410 PF04910 Tcf25: Transcriptiona 71.1 53 0.0012 32.9 11.4 107 112-218 97-226 (360)
411 PRK14276 chaperone protein Dna 71.1 3 6.6E-05 42.0 2.6 26 254-279 42-67 (380)
412 KOG1914 mRNA cleavage and poly 70.9 36 0.00078 35.8 10.1 73 142-215 10-83 (656)
413 PRK14282 chaperone protein Dna 70.8 3.4 7.4E-05 41.4 2.9 27 253-279 43-69 (369)
414 COG3118 Thioredoxin domain-con 70.2 24 0.00052 34.2 8.2 56 156-211 139-194 (304)
415 cd02677 MIT_SNX15 MIT: domain 69.9 10 0.00022 28.9 4.6 32 116-147 4-35 (75)
416 KOG0292 Vesicle coat complex C 69.7 86 0.0019 35.0 12.9 105 115-219 988-1118(1202)
417 PRK14291 chaperone protein Dna 69.4 3.7 8E-05 41.4 2.8 28 253-280 40-67 (382)
418 smart00386 HAT HAT (Half-A-TPR 69.1 12 0.00027 22.1 4.2 25 167-191 3-27 (33)
419 KOG1924 RhoA GTPase effector D 68.6 1.9E+02 0.0042 31.9 17.8 7 29-35 214-220 (1102)
420 TIGR02561 HrpB1_HrpK type III 67.9 57 0.0012 28.4 9.3 70 153-222 12-81 (153)
421 TIGR03504 FimV_Cterm FimV C-te 67.8 9.8 0.00021 25.9 3.7 25 155-179 3-27 (44)
422 KOG4563 Cell cycle-regulated h 67.8 19 0.00041 35.8 7.1 57 113-169 36-101 (400)
423 PF09205 DUF1955: Domain of un 67.7 44 0.00096 28.8 8.3 42 174-215 109-150 (161)
424 KOG0276 Vesicle coat complex C 67.6 79 0.0017 33.8 11.8 85 117-213 665-749 (794)
425 PRK14292 chaperone protein Dna 67.2 7.1 0.00015 39.2 4.3 28 253-280 39-66 (371)
426 PRK15490 Vi polysaccharide bio 67.2 1.2E+02 0.0025 32.5 13.3 81 127-209 17-98 (578)
427 smart00386 HAT HAT (Half-A-TPR 66.9 16 0.00035 21.6 4.5 28 132-159 1-29 (33)
428 KOG0163 Myosin class VI heavy 66.4 1.4E+02 0.0031 32.8 13.5 15 199-213 896-910 (1259)
429 PRK14280 chaperone protein Dna 66.3 4.9 0.00011 40.5 2.9 26 254-279 42-67 (376)
430 TIGR02710 CRISPR-associated pr 65.7 92 0.002 31.5 11.7 58 119-176 131-196 (380)
431 PRK11619 lytic murein transgly 65.3 55 0.0012 35.5 10.8 62 152-213 313-374 (644)
432 PF04212 MIT: MIT (microtubule 65.3 52 0.0011 24.1 9.8 12 207-218 34-45 (69)
433 KOG3783 Uncharacterized conser 65.3 28 0.00061 36.4 8.1 82 121-203 270-354 (546)
434 PF11846 DUF3366: Domain of un 65.0 26 0.00057 31.4 7.2 49 134-182 127-175 (193)
435 PRK13184 pknD serine/threonine 64.8 52 0.0011 37.2 10.7 84 134-218 535-624 (932)
436 COG4649 Uncharacterized protei 64.6 81 0.0017 28.5 9.7 91 123-213 99-195 (221)
437 PRK14301 chaperone protein Dna 64.4 5.4 0.00012 40.1 2.8 27 253-279 42-68 (373)
438 PRK14299 chaperone protein Dna 63.7 6.1 0.00013 38.3 2.9 27 253-279 41-67 (291)
439 PRK10869 recombination and rep 63.6 1.2E+02 0.0026 32.2 12.9 49 169-217 248-296 (553)
440 COG4907 Predicted membrane pro 63.4 6.1 0.00013 40.2 2.9 18 201-218 491-508 (595)
441 PRK14283 chaperone protein Dna 63.0 6.6 0.00014 39.6 3.2 27 253-279 42-68 (378)
442 cd02680 MIT_calpain7_2 MIT: do 63.0 15 0.00033 28.0 4.4 16 164-179 19-34 (75)
443 PF12854 PPR_1: PPR repeat 62.5 19 0.00042 22.6 4.2 26 150-175 6-31 (34)
444 COG4371 Predicted membrane pro 62.2 10 0.00022 35.6 3.9 12 359-370 158-169 (334)
445 KOG0010 Ubiquitin-like protein 62.0 15 0.00033 37.8 5.4 25 342-366 167-193 (493)
446 KOG2422 Uncharacterized conser 61.2 1.5E+02 0.0033 31.5 12.5 88 132-219 252-377 (665)
447 KOG0985 Vesicle coat protein c 60.7 1.1E+02 0.0023 35.0 11.6 89 123-216 1053-1164(1666)
448 PF04053 Coatomer_WDAD: Coatom 60.3 43 0.00092 34.6 8.5 79 120-210 349-427 (443)
449 PF02084 Bindin: Bindin; Inte 60.0 1.1E+02 0.0023 28.4 10.0 32 356-387 124-155 (238)
450 PF04053 Coatomer_WDAD: Coatom 60.0 71 0.0015 33.0 10.0 33 182-214 344-376 (443)
451 PF10938 YfdX: YfdX protein; 59.8 37 0.00079 29.7 6.9 65 115-179 72-145 (155)
452 KOG0985 Vesicle coat protein c 59.2 28 0.00061 39.3 7.1 83 121-215 1197-1309(1666)
453 PF07219 HemY_N: HemY protein 59.2 56 0.0012 26.5 7.5 46 115-160 56-102 (108)
454 PF15469 Sec5: Exocyst complex 59.0 69 0.0015 28.4 8.8 27 199-225 153-180 (182)
455 KOG1914 mRNA cleavage and poly 58.9 2.5E+02 0.0054 29.8 14.6 109 126-234 374-488 (656)
456 KOG1464 COP9 signalosome, subu 58.0 1.9E+02 0.004 28.1 14.4 217 129-395 38-350 (440)
457 smart00745 MIT Microtubule Int 57.7 44 0.00095 25.0 6.3 16 203-218 33-48 (77)
458 cd02679 MIT_spastin MIT: domai 57.6 23 0.00049 27.4 4.6 27 119-145 9-35 (79)
459 KOG0715 Molecular chaperone (D 57.3 10 0.00023 36.7 3.3 28 253-280 80-107 (288)
460 PF09205 DUF1955: Domain of un 57.1 92 0.002 26.9 8.4 63 118-180 85-149 (161)
461 cd02684 MIT_2 MIT: domain cont 55.7 88 0.0019 23.7 7.6 16 204-219 32-47 (75)
462 COG2909 MalT ATP-dependent tra 55.0 1.3E+02 0.0029 33.5 11.3 83 117-199 457-551 (894)
463 cd02679 MIT_spastin MIT: domai 54.5 26 0.00057 27.0 4.4 32 167-213 5-36 (79)
464 PF10345 Cohesin_load: Cohesin 54.4 1.5E+02 0.0032 31.8 11.9 102 118-219 301-446 (608)
465 KOG3783 Uncharacterized conser 54.2 1.1E+02 0.0024 32.1 10.1 69 151-219 449-525 (546)
466 PF09280 XPC-binding: XPC-bind 53.8 15 0.00032 26.7 2.8 38 346-383 4-47 (59)
467 KOG3616 Selective LIM binding 53.7 37 0.0008 37.0 6.7 26 152-177 766-791 (1636)
468 cd07642 BAR_ASAP2 The Bin/Amph 52.8 1.9E+02 0.0042 26.7 10.9 53 151-203 25-80 (215)
469 cd02656 MIT MIT: domain contai 52.8 65 0.0014 24.0 6.5 15 204-218 32-46 (75)
470 PF13041 PPR_2: PPR repeat fam 52.7 68 0.0015 21.5 6.6 28 152-179 4-31 (50)
471 PRK14289 chaperone protein Dna 52.7 10 0.00023 38.2 2.6 27 253-279 43-69 (386)
472 KOG0037 Ca2+-binding protein, 52.2 25 0.00055 32.4 4.7 12 357-368 55-66 (221)
473 PF13041 PPR_2: PPR repeat fam 51.6 69 0.0015 21.5 5.9 42 120-161 5-48 (50)
474 COG2015 Alkyl sulfatase and re 51.0 35 0.00075 35.4 5.8 52 115-166 449-501 (655)
475 PF10938 YfdX: YfdX protein; 49.6 1.3E+02 0.0029 26.1 8.7 96 118-213 2-145 (155)
476 PF02197 RIIa: Regulatory subu 49.1 24 0.00052 23.1 3.0 28 7-38 5-33 (38)
477 PRK10266 curved DNA-binding pr 49.1 16 0.00035 35.6 3.2 27 253-279 41-67 (306)
478 KOG3915 Transcription regulato 48.7 30 0.00065 35.4 4.9 45 294-338 65-123 (641)
479 cd02681 MIT_calpain7_1 MIT: do 48.6 1.2E+02 0.0026 23.1 7.7 18 196-213 17-34 (76)
480 cd02678 MIT_VPS4 MIT: domain c 48.5 1.1E+02 0.0025 22.9 9.7 15 204-218 32-46 (75)
481 KOG0889 Histone acetyltransfer 48.4 1.3E+02 0.0028 38.6 10.8 77 150-226 2811-2895(3550)
482 cd02677 MIT_SNX15 MIT: domain 48.3 1.2E+02 0.0025 23.1 7.2 14 168-181 4-17 (75)
483 PF02064 MAS20: MAS20 protein 47.8 59 0.0013 27.3 5.9 32 118-149 63-94 (121)
484 KOG2422 Uncharacterized conser 47.4 2.8E+02 0.0061 29.6 11.8 92 123-217 347-451 (665)
485 KOG0739 AAA+-type ATPase [Post 47.2 1.6E+02 0.0035 29.0 9.4 73 134-246 7-80 (439)
486 COG0497 RecN ATPase involved i 47.0 3.9E+02 0.0084 28.5 13.2 12 30-41 140-151 (557)
487 PF01239 PPTA: Protein prenylt 46.8 60 0.0013 19.7 4.5 26 171-196 3-28 (31)
488 PF09670 Cas_Cas02710: CRISPR- 46.3 2.4E+02 0.0052 28.4 11.2 65 151-215 131-199 (379)
489 PRK14293 chaperone protein Dna 45.8 19 0.00041 36.2 3.2 26 254-279 41-66 (374)
490 KOG4151 Myosin assembly protei 45.8 22 0.00047 38.7 3.7 80 126-205 101-181 (748)
491 PF08626 TRAPPC9-Trs120: Trans 45.8 2.6E+02 0.0056 32.8 12.7 132 113-244 237-464 (1185)
492 PF05186 Dpy-30: Dpy-30 motif; 44.9 25 0.00054 23.6 2.6 26 8-37 14-39 (42)
493 KOG3616 Selective LIM binding 43.9 75 0.0016 34.8 7.1 26 186-211 883-908 (1636)
494 KOG4661 Hsp27-ERE-TATA-binding 43.8 37 0.00079 35.7 4.8 13 316-328 909-921 (940)
495 KOG4459 Membrane-associated pr 43.3 1.7E+02 0.0037 30.2 9.3 99 119-219 32-167 (471)
496 PF12854 PPR_1: PPR repeat 43.2 62 0.0013 20.2 4.2 27 184-210 6-32 (34)
497 PHA02537 M terminase endonucle 43.1 87 0.0019 29.3 6.9 66 118-183 129-210 (230)
498 PF04348 LppC: LppC putative l 42.8 8.1 0.00018 40.8 0.0 102 116-217 22-130 (536)
499 KOG4056 Translocase of outer m 42.0 1.1E+02 0.0025 26.2 6.7 53 105-157 68-121 (143)
500 PF01535 PPR: PPR repeat; Int 41.7 41 0.0009 19.5 3.2 29 153-181 2-30 (31)
No 1
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-68 Score=499.60 Aligned_cols=372 Identities=48% Similarity=0.729 Sum_probs=297.4
Q ss_pred CCHHHHHHHHHHHHHHhhCCCCCCccchhhHHHHHHHcCCCCCCCCCCCCCCCCCcCccccchHHhhhhhhhchhccchh
Q 044737 1 MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPRASVVEESEEEEQRVEVEEKEEEEDE 80 (399)
Q Consensus 1 ~~~~~~~~l~~~~~~~~~~p~~l~~~~~~f~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~~ 80 (399)
|+..+|..|+.||.+|+++|++||.+++.|+|+|++|+|+++|++..+...+ +...+.+.+++..++ ++.+++.+
T Consensus 1 ~~~~~ll~l~~F~~~~k~~~~~l~~~~~~flr~~~~s~g~~vpp~~~k~~~~----e~~k~e~~~~~~~ee-~~~~~e~s 75 (377)
T KOG1308|consen 1 MSSPKLLILCAFVKMCKQDPSFLHTTEMIFLREWVESAGAKVPPAGQKAKSE----ENTKAEASISKSVEE-SLKAPEVS 75 (377)
T ss_pred CCchhHHHhhhHHHHhccCchhhcccchhHHHHHHHhccCcCCCCCCcCccc----ccccccCCccccccc-ccccCCCC
Confidence 5778999999999999999999999999999999999999999984432211 111111222222222 45667778
Q ss_pred hhhhhhccccc-ccCCCCCCCCCCCCCCcccCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHH
Q 044737 81 IVESDIELEGD-IVEADNDPPQKMGDSSAEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRA 158 (399)
Q Consensus 81 ~~esd~e~~~~-~~e~~~~~~~~~~d~~~~~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra 158 (399)
+.+++++++.+ ||+++++++|+|||+.+++|++++++|...+..+..++..|.+++||++|+.||.++| ++.+|.+|+
T Consensus 76 ~~~~~~~~d~egviepd~d~pq~MGds~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~ 155 (377)
T KOG1308|consen 76 SPESDLEIDGEGVIEPDTDAPQEMGDSNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRA 155 (377)
T ss_pred CCCcchhccCCCccccCCCcchhhchhhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhccccc
Confidence 89999999999 9999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHH
Q 044737 159 SVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHR 238 (399)
Q Consensus 159 ~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~ 238 (399)
.++++++++..||+||+.||++||+.++.|.+|+.+++.+|+|++|.++|+.+++++++..+..+|++|.++++++.+++
T Consensus 156 sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~ 235 (377)
T KOG1308|consen 156 SVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHR 235 (377)
T ss_pred ceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q 044737 239 RKYDRLRREREERKVERERLRRRAEAQAAYEKAKKEEQSSSSERPGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGM- 317 (399)
Q Consensus 239 ~~ye~l~~~~e~kk~~~er~~~~~~A~~~~~~~~k~~~~d~g~~~~~~p~g~~g~~gg~~gg~~gg~~gg~~gg~~gg~- 317 (399)
++|++.+++++++. ++++...++...+.+...........+.++ .+.|+|+|+|+|+|++.+
T Consensus 236 ~k~er~~~e~~~~~----r~er~r~~r~~~e~~~~e~~k~~~~~~~~~-------------~~~g~~p~~M~g~~~~~~~ 298 (377)
T KOG1308|consen 236 RKYERAREEREIKE----RVERVRYAREPEEMANPEEFKRMLKNPQYR-------------QFLGGFPGGMPGSFPGDKR 298 (377)
T ss_pred hHHHHHHHHhcccc----cccccccccchhhhcChhhhhhhhccCCCC-------------cccCCCcccCCCCCCCccc
Confidence 99999988876643 333333333333222211111111111111 122333444444444332
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCcchhccCCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCCcHHHHHHHHHHhcC
Q 044737 318 -PGGFPGGMPGGFPGGMPGGGPGNVDFSKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFG 396 (399)
Q Consensus 318 -~g~~~g~~~gg~~~~~~~~~p~~~~~~~~~~dpe~~~~~~dp~~~~~~~~~~~np~~~~~~~~~p~~~~~~~~l~~~~~ 396 (399)
+++++|+ +++++ .+++|+...+++|++||+|+.+||||+|+.+++++++||+||++|++||+||++|+||+++|+
T Consensus 299 m~~~m~~~---~~n~~-~~~~p~~~gi~ki~~dpev~aAfqdp~v~aal~d~~~np~n~~kyq~n~kv~~~i~kl~~kf~ 374 (377)
T KOG1308|consen 299 MTDGMKGF---DGNSP-VKQQPNQIGISKILSDPEVAAAFQDPEVQAALMDVSQNPANMMKYQNNPKVMDVISKLSQKFP 374 (377)
T ss_pred cccccccC---CCCCc-cccCCCcccHhhhcCchHHHHhhcChHHHhhhhhcccChHHHHHhccChHHHHHHHHHHhhcC
Confidence 2222221 11111 233454445899999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 044737 397 GP 398 (399)
Q Consensus 397 ~~ 398 (399)
|+
T Consensus 375 g~ 376 (377)
T KOG1308|consen 375 GM 376 (377)
T ss_pred CC
Confidence 86
No 2
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.6e-25 Score=217.20 Aligned_cols=175 Identities=27% Similarity=0.462 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH 195 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~ 195 (399)
.+.+.+..|+.+|+.|+|..||.+|++||..+| ++.+|+|||.||++++.+..|+.||+++|+++|++.++|+|.|.|+
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAAL 436 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 366778999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044737 196 AMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKVEPNALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKKE 274 (399)
Q Consensus 196 ~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~~~~k~~e~~~~ye~l~~~~e~kk~~~er~~~~~~A~~~~~~~~k~ 274 (399)
..+.+|+.|+..|++++++||++. +...++++....
T Consensus 437 ~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~------------------------------------------- 473 (539)
T KOG0548|consen 437 RAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ------------------------------------------- 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh-------------------------------------------
Confidence 999999999999999999999873 222222211100
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhccCCCHHHHh
Q 044737 275 EQSSSSERPGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGNVDFSKILNDPELMA 354 (399)
Q Consensus 275 ~~~d~g~~~~~~p~g~~g~~gg~~gg~~gg~~gg~~gg~~gg~~g~~~g~~~gg~~~~~~~~~p~~~~~~~~~~dpe~~~ 354 (399)
++. -.|. ......|.||||++
T Consensus 474 ----~~~------------------------------------------------------~~~e-e~~~r~~~dpev~~ 494 (539)
T KOG0548|consen 474 ----RGD------------------------------------------------------ETPE-ETKRRAMADPEVQA 494 (539)
T ss_pred ----hcC------------------------------------------------------CCHH-HHHHhhccCHHHHH
Confidence 000 0111 12356889999999
Q ss_pred hcCCHHHHHHHHHHhhChHHHHHhhcCCcHHHHHHHHHHh
Q 044737 355 AFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAK 394 (399)
Q Consensus 355 ~~~dp~~~~~~~~~~~np~~~~~~~~~p~~~~~~~~l~~~ 394 (399)
+|+||.++.++.++.+|| +++++|.||.|++.|++|++.
T Consensus 495 il~d~~m~~~l~q~q~~p-a~~~~~~n~~v~~ki~~l~~~ 533 (539)
T KOG0548|consen 495 ILQDPAMRQILEQMQENP-ALQEHLKNPMVMQKIEKLISA 533 (539)
T ss_pred HHcCHHHHHHHHHHHhCH-HHHHHHhccHHHHHHHHHHHh
Confidence 999999999999999999 788999999999999999764
No 3
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.1e-24 Score=206.42 Aligned_cols=172 Identities=26% Similarity=0.351 Sum_probs=155.4
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 044737 113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG 187 (399)
Q Consensus 113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a 187 (399)
-..+..+.++.+||.+|+.|+|..|-++|++||.++| ++.+|.|||.++.++|+..+||.+|+.|++||+.+.++
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 3456788999999999999999999999999999999 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH-----HHHHHHHHH------
Q 044737 188 YKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRRE-----REERKVERE------ 256 (399)
Q Consensus 188 ~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~ye~l~~~-----~e~kk~~~e------ 256 (399)
|.++|.||..+++|++|+++|++|+++.-+-.+.+.|++++..+++ ..++++|++++.- .++++++++
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkk-SkRkd~ykilGi~~~as~~eikkayrk~AL~~H 402 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKK-SKRKDWYKILGISRNASDDEIKKAYRKLALVHH 402 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH-hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhC
Confidence 9999999999999999999999999999887777888888877776 5677899999873 446666655
Q ss_pred -------------HHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 044737 257 -------------RLRRRAEAQAAYEKAKKEEQSSSSERPGG 285 (399)
Q Consensus 257 -------------r~~~~~~A~~~~~~~~k~~~~d~g~~~~~ 285 (399)
+|+.+-+|..+++++.++.++|+|.+...
T Consensus 403 pd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle~ 444 (486)
T KOG0550|consen 403 PDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLEE 444 (486)
T ss_pred CCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchhh
Confidence 78889999999999999999999988543
No 4
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.91 E-value=8.9e-24 Score=197.92 Aligned_cols=107 Identities=34% Similarity=0.529 Sum_probs=105.5
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 044737 113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTR 191 (399)
Q Consensus 113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~ 191 (399)
+....|+.+|..||.+++.++|.+||..|++||.++| ++++|+|||.+|.+||.|+.|++||..||.+||.+.++|.|+
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 6788999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 192 GMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 192 g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
|.||+.+|+|++|+..|++||.|+|+|+
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 9999999999999999999999999996
No 5
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.1e-22 Score=199.08 Aligned_cols=177 Identities=31% Similarity=0.420 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~ 196 (399)
+.+++.+||.+|..|+|+.||.+|++||.++| ++.+|+||..||.++++|.+|+.|..++++++|+|+++|+|+|.++.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 46789999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCcHHH-HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044737 197 MLGHWEEAVHDLHVASKIDFDEEI-AAVLKKVEPNALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKKEE 275 (399)
Q Consensus 197 ~lg~~eeA~~~l~~Al~ldp~~~~-~~~lk~v~~~~~k~~e~~~~ye~l~~~~e~kk~~~er~~~~~~A~~~~~~~~k~~ 275 (399)
.+|+|++|+..|.++|+++|+|.. ..-|..+. . .+..
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~---------~------------------------------~~~~--- 119 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY---------L------------------------------EDYA--- 119 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh---------h------------------------------HHHH---
Confidence 999999999999999999999952 11111110 0 0000
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhccCCCHHHHhh
Q 044737 276 QSSSSERPGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGNVDFSKILNDPELMAA 355 (399)
Q Consensus 276 ~~d~g~~~~~~p~g~~g~~gg~~gg~~gg~~gg~~gg~~gg~~g~~~g~~~gg~~~~~~~~~p~~~~~~~~~~dpe~~~~ 355 (399)
.+. . + .+| -.++++-+||.+..+
T Consensus 120 ---~~~-----~-------------~----------------------------------~~p--~~~~~l~~~p~t~~~ 142 (539)
T KOG0548|consen 120 ---ADQ-----L-------------F----------------------------------TKP--YFHEKLANLPLTNYS 142 (539)
T ss_pred ---hhh-----h-------------c----------------------------------cCc--HHHHHhhcChhhhhh
Confidence 000 0 0 023 156889999999999
Q ss_pred cCCHHHHHHHHHHhhChHHHHHhhcCCcHHHHHHHHHH
Q 044737 356 FSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMA 393 (399)
Q Consensus 356 ~~dp~~~~~~~~~~~np~~~~~~~~~p~~~~~~~~l~~ 393 (399)
++||.++.+++.+.+||.++.-|++||++|..+..|++
T Consensus 143 ~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~ 180 (539)
T KOG0548|consen 143 LSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKG 180 (539)
T ss_pred hccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999975
No 6
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.86 E-value=9.8e-21 Score=179.41 Aligned_cols=173 Identities=20% Similarity=0.242 Sum_probs=146.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 044737 114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SA----IMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGY 188 (399)
Q Consensus 114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a----~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~ 188 (399)
.+.++.....-+......++|.+++..+++.++.+| .+ ..+..++.||..-+++.+||+.|.++|.++|+++.+|
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l 344 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHH
Confidence 345566667778888999999999999999999999 33 4445578899999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHH-HHHHHHHhHHHHhHHHHHHHHHHHHHH--------------------
Q 044737 189 KTRGMAHAMLGHWEEAVHDLHVASKIDFDEEI-AAVLKKVEPNALRIEEHRRKYDRLRRE-------------------- 247 (399)
Q Consensus 189 ~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~-~~~lk~v~~~~~k~~e~~~~ye~l~~~-------------------- 247 (399)
+-|+.||..-..|+.|+++|++|++++++|.. .+-+.+ ..++++...+++||++|++.
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~-Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWH 423 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLER-AKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWH 423 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH-HHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999954 444444 35667778889999999873
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 044737 248 ------REERKVERERLRRRAEAQAAYEKAKKEEQSSSSERPGGMP 287 (399)
Q Consensus 248 ------~e~kk~~~er~~~~~~A~~~~~~~~k~~~~d~g~~~~~~p 287 (399)
.++|+.+++++.+++.|+++++++++|+++|+|.+|=.+.
T Consensus 424 PDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDPLD~E 469 (504)
T KOG0624|consen 424 PDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDPLDPE 469 (504)
T ss_pred CccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCCCChh
Confidence 3445555557889999999999999999999999975543
No 7
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=4.4e-18 Score=151.00 Aligned_cols=107 Identities=30% Similarity=0.403 Sum_probs=101.8
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 044737 113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAK 186 (399)
Q Consensus 113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~ 186 (399)
..+..+..++..||.+|+.|+|.+|...|++||.++| .+++|.|||.|++++++|+.||.+|.+||+|+|.+.+
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k 169 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK 169 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH
Confidence 3356788999999999999999999999999999999 3799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 187 GYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 187 a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
|+.|||.+|..+.+|++|+.+|++.++++|...
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 999999999999999999999999999999863
No 8
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.8e-17 Score=157.82 Aligned_cols=124 Identities=26% Similarity=0.327 Sum_probs=110.0
Q ss_pred cCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------CHHHHHHHHHHHHHcCCHHHHHHH
Q 044737 110 VTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----------------SAIMYATRASVYIKMKKPNAAIRD 173 (399)
Q Consensus 110 ~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----------------~a~~~~nra~a~~~l~~~~~Ai~d 173 (399)
.+++.+..|...+.+||.+|+.++|..|+..|.+|+..-. ...+|.|+|.||+++++|.+|+..
T Consensus 200 ~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~ 279 (397)
T KOG0543|consen 200 FAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIES 279 (397)
T ss_pred chHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Confidence 3456899999999999999999999999999999998632 268899999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHh
Q 044737 174 ATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALR 233 (399)
Q Consensus 174 ~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k 233 (399)
|+++|+++|+|++|+||+|.||..+++|+.|+.+|++|++++|+| ++...|..+..++++
T Consensus 280 c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 280 CNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 455555555444333
No 9
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.69 E-value=6.3e-17 Score=153.69 Aligned_cols=109 Identities=27% Similarity=0.335 Sum_probs=104.4
Q ss_pred cCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 044737 110 VTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGY 188 (399)
Q Consensus 110 ~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~ 188 (399)
+.++.++.+.+++++||.||++|+|++||.||+++|.++| ++.+|.|||.+|+++++|..|..||+.||.||-.+++||
T Consensus 89 I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAY 168 (536)
T KOG4648|consen 89 IAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAY 168 (536)
T ss_pred HHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 3455577788899999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 189 KTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 189 ~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
.||+.|...||...+|.++|+.+|+|.|.+
T Consensus 169 SRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 169 SRRMQARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 999999999999999999999999999986
No 10
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=6e-16 Score=152.72 Aligned_cols=109 Identities=37% Similarity=0.538 Sum_probs=101.3
Q ss_pred cCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 044737 110 VTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGY 188 (399)
Q Consensus 110 ~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~ 188 (399)
..++..+.|..++.+||.+|+.++|++||.+|++||.++| .++.|.||+.||..+|+|+..+++|++||+++|+++++|
T Consensus 107 ~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl 186 (606)
T KOG0547|consen 107 LKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKAL 186 (606)
T ss_pred ChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHH
Confidence 4567788899999999999999999999999999999999 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhC-CcH
Q 044737 189 KTRGMAHAMLGHWEEAVHDLHVASKID-FDE 218 (399)
Q Consensus 189 ~~~g~a~~~lg~~eeA~~~l~~Al~ld-p~~ 218 (399)
+||+.||-.+|++.+|+.|+...+-++ .+|
T Consensus 187 ~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n 217 (606)
T KOG0547|consen 187 LRRASAHEQLGKFDEALFDVTVLCILEGFQN 217 (606)
T ss_pred HHHHHHHHhhccHHHHHHhhhHHHHhhhccc
Confidence 999999999999999999988765543 444
No 11
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.2e-15 Score=142.77 Aligned_cols=104 Identities=27% Similarity=0.378 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIML---NP--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l---~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~ 190 (399)
+.|+.++..||.||+.++|..|+..|+++|.. +| ++.+|.|||+|.+-+++|..||.||.+|+.++|++.++|+|
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 47899999999999999999999999999987 45 89999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 191 ~g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
-+.|++.|.++.+|+..++..+.++-+..
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 99999999999999999999998887663
No 12
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.64 E-value=3.2e-16 Score=149.16 Aligned_cols=66 Identities=24% Similarity=0.112 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINP 182 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p 182 (399)
.+.-+..++.++++.+++..||+.|..||.++| ++.-|-.|+.++..+++|.+|.+++..|++++-
T Consensus 147 ~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 147 LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence 355566899999999999999999999999999 999999999999999999999999999999874
No 13
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.62 E-value=1e-14 Score=145.15 Aligned_cols=111 Identities=30% Similarity=0.454 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM 197 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~ 197 (399)
..++..|+.+|..++|.+|+.+|++||+++| ++.+|++||.||+++++|.+|+.+|++||.++|+++.+|+++|.+|..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhH
Q 044737 198 LGHWEEAVHDLHVASKIDFDEE-IAAVLKKVEP 229 (399)
Q Consensus 198 lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~ 229 (399)
+|+|++|+.+|+++++++|++. +..++..+..
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999999984 4445544433
No 14
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.61 E-value=2.8e-14 Score=123.97 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML 198 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l 198 (399)
.+...|..++..|+|++|+..|.+++.++| +..+|.++|.++..+|+|++|+..|++++.++|+++.+|+++|.++..+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 466789999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCcHHH-HHHHHHHh
Q 044737 199 GHWEEAVHDLHVASKIDFDEEI-AAVLKKVE 228 (399)
Q Consensus 199 g~~eeA~~~l~~Al~ldp~~~~-~~~lk~v~ 228 (399)
|++++|+..|+++++++|++.. +..+..++
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 9999999999999999999843 33333333
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.54 E-value=1.7e-13 Score=145.83 Aligned_cols=125 Identities=30% Similarity=0.415 Sum_probs=107.0
Q ss_pred CCCCCCCCCCCCCCcccCHH-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044737 94 EADNDPPQKMGDSSAEVTDE-KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIR 172 (399)
Q Consensus 94 e~~~~~~~~~~d~~~~~~ee-~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~ 172 (399)
++..+.++...+....++.+ ....+..++..|+.+|+.|+|++||.+|+++|.++|+..+|.|+|.||+++++|++|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~ 181 (615)
T TIGR00990 102 EPADELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVE 181 (615)
T ss_pred CccccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHH
Confidence 33333334333334455544 44568899999999999999999999999999999966789999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 173 DATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 173 d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
+|++||+++|+++++|+++|.+|..+|+|++|+.+|..++.+++.+
T Consensus 182 ~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~ 227 (615)
T TIGR00990 182 DTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFR 227 (615)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999888887643
No 16
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.48 E-value=1.5e-12 Score=126.50 Aligned_cols=104 Identities=24% Similarity=0.181 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA 194 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a 194 (399)
..+..+..+|..+...|++.+|+..|+++|.++| ++.+|.++|.+|..+++|+.|+..|+++|+++|++..+|+++|.+
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA 141 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3466799999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 195 HAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 195 ~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
+...|++++|+.+|+++++++|++.
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999985
No 17
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2.9e-12 Score=126.94 Aligned_cols=135 Identities=21% Similarity=0.276 Sum_probs=114.4
Q ss_pred cCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 044737 110 VTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGY 188 (399)
Q Consensus 110 ~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~ 188 (399)
+.++-...|+.+..+|..+|-.|++-.|-..|.++|.++| ...+|..||.+|+...+..+-+.++++|..+||.++..|
T Consensus 318 ~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvY 397 (606)
T KOG0547|consen 318 IDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVY 397 (606)
T ss_pred cchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchh
Confidence 3444455688999999999999999999999999999999 888899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHH-hHHHHhHHHHHHHHHHH
Q 044737 189 KTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKV-EPNALRIEEHRRKYDRL 244 (399)
Q Consensus 189 ~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v-~~~~~k~~e~~~~ye~l 244 (399)
+.||+.++.+++|++|+.+|++|++|+|++......+-+ .-+..++.+....++..
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~ 454 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA 454 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999654332222 33344555555444433
No 18
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.47 E-value=1.2e-12 Score=111.38 Aligned_cols=103 Identities=22% Similarity=0.252 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH 195 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~ 195 (399)
.+......|..++..++|++|+..|++++.++| +..+|.++|.+|+.+++|.+|+..+++++.++|+++..|+.+|.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 456678899999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 196 AMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 196 ~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
..+|+++.|+..|+++++++|++.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 96 LALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999985
No 19
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.5e-12 Score=117.71 Aligned_cols=112 Identities=21% Similarity=0.207 Sum_probs=101.8
Q ss_pred CcccCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CC-CHHHHHHHHHHHHHcCCH
Q 044737 107 SAEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIML------------------NP-SAIMYATRASVYIKMKKP 167 (399)
Q Consensus 107 ~~~~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l------------------~P-~a~~~~nra~a~~~l~~~ 167 (399)
..-..++.++....+..+||.+|+.|+|.+|+..|..||-. +. ...++.|.+.|++..++|
T Consensus 167 WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~ 246 (329)
T KOG0545|consen 167 WQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY 246 (329)
T ss_pred ccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH
Confidence 33345666778899999999999999999999999999853 22 468999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 168 NAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 168 ~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
-++++.|..+|..+|++.+|||+||.|+...-+..+|..+|.++|+++|.-
T Consensus 247 yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 247 YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 999999999999999999999999999999999999999999999999974
No 20
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.6e-13 Score=121.55 Aligned_cols=115 Identities=25% Similarity=0.356 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737 114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192 (399)
Q Consensus 114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g 192 (399)
+-..+..++..|+.+|...+|..||.+|.+||.++| .+.+|.|||.||+++.+|+.+..+|.+|++++|+.+++++.+|
T Consensus 6 ~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg 85 (284)
T KOG4642|consen 6 MSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLG 85 (284)
T ss_pred cchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence 345678999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhh------CCcHHHHHHHHHHh
Q 044737 193 MAHAMLGHWEEAVHDLHVASKI------DFDEEIAAVLKKVE 228 (399)
Q Consensus 193 ~a~~~lg~~eeA~~~l~~Al~l------dp~~~~~~~lk~v~ 228 (399)
.++.....|++|+..+.+|..+ .+.+++...|..++
T Consensus 86 ~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred HHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999999999999999999655 34457777777764
No 21
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.42 E-value=7.2e-12 Score=108.92 Aligned_cols=102 Identities=14% Similarity=-0.001 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH 195 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~ 195 (399)
..+.++..|..++..|+|++|+..|.-...++| ++..|+++|.|+..+|+|.+||..|.+|+.++|+++.++++.|.|+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 445788999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCcH
Q 044737 196 AMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 196 ~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
+.+|+.+.|.+.|+.|+.+.-++
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999887433
No 22
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.40 E-value=2.7e-13 Score=134.72 Aligned_cols=113 Identities=32% Similarity=0.481 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH 195 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~ 195 (399)
.|..++.+++.+|..+.|+.||.+|++||+++| .+.+|.+|+.+|++.++|..|+.|+.+||+++|.+.++|+|+|.++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 467889999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhH
Q 044737 196 AMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKVEP 229 (399)
Q Consensus 196 ~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~ 229 (399)
..++++.+|+.+|++...+.|++. +...+.++..
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 999999999999999999999984 4445555443
No 23
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.34 E-value=1.4e-11 Score=117.65 Aligned_cols=104 Identities=24% Similarity=0.322 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA 194 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a 194 (399)
..++.....|+.++..++|..|+.+|..||+.+| +..+++.||.+|+.+|+-..|+.|++++|++.|++.-|...||.+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 4567889999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 195 HAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 195 ~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
+.+.|.++.|..+|.+.|..+|++.
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~ 140 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNG 140 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999763
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.34 E-value=3.4e-11 Score=128.31 Aligned_cols=129 Identities=22% Similarity=0.256 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA 194 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a 194 (399)
..+..+..+|..++..|++++|+..|.++|.++| ....|.++|.+|..+++|++|+.+|+++|+++|+++.+|+.+|.+
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 408 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL 408 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3455677888888888888888888888888888 888888888888888888888888888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737 195 HAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRL 244 (399)
Q Consensus 195 ~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l 244 (399)
+..+|+|++|+.+|+++++++|++ ..+..+..+...++++.+....|+..
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888888888888888888888876 33444455554555555555554443
No 25
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.34 E-value=3.5e-11 Score=110.12 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHH
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVY-IKMKK--PNAAIRDATAALEINPDSAKGYKTR 191 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~-~~l~~--~~~Ai~d~~~Al~l~p~~~~a~~~~ 191 (399)
+.+..|...|..+...|+|++|+..|.+|++++| +..++.++|.++ ...++ +.+|+..++++++++|+++.+++.+
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~L 150 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLL 150 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHH
Confidence 3456899999999999999999999999999999 999999999985 67787 5999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 192 GMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 192 g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
|.++..+|+|++|+..|+++++++|.+.
T Consensus 151 A~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 151 ASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999999998763
No 26
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.33 E-value=5e-12 Score=128.16 Aligned_cols=129 Identities=21% Similarity=0.177 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~ 196 (399)
+.++.+.||+|-..+.|+.|+.+|.+|+.+.| .+.+|.|+|.+|+..|..+-||+.|.+||++.|.++.||+++|.|+.
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk 331 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK 331 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH
Confidence 45788899999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 197 MLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 197 ~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
..|+..+|+.+|.+||.+.|+. +....|..+.....+++++.+.|+..-.
T Consensus 332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~ 382 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE 382 (966)
T ss_pred hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 9999999999999999999987 4566777778888888888877765443
No 27
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.29 E-value=2.4e-11 Score=123.30 Aligned_cols=100 Identities=28% Similarity=0.262 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM 197 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~ 197 (399)
..+.+.|..|-++|++++||.+|.+||++.| .+.+|+|+|..|-.+|+..+|+.+|++||.++|.++.|+.++|.+|..
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD 468 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD 468 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc
Confidence 3344555555566666666666666666666 666666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHhhCCcH
Q 044737 198 LGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 198 lg~~eeA~~~l~~Al~ldp~~ 218 (399)
.|+..+|+..|+.||+++||-
T Consensus 469 sGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 469 SGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred cCCcHHHHHHHHHHHccCCCC
Confidence 666666666666666666654
No 28
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.25 E-value=2.7e-11 Score=91.10 Aligned_cols=66 Identities=30% Similarity=0.464 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG-HWEEAVHDLHVASKIDF 216 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg-~~eeA~~~l~~Al~ldp 216 (399)
+..|.++|.+++..++|.+|+..|+++|+++|+++.+|+++|.+|..++ ++++|+.+|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4455566666666666666666666666666666666666666666665 46666666666666555
No 29
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1e-10 Score=110.45 Aligned_cols=96 Identities=26% Similarity=0.253 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhH
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEP 229 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~ 229 (399)
+.-+.+-|.-+++.++|.+|+..|++||+++|.++..|++|+.||..||.|+.|+++|+.|+.+||.. ..+..|..+..
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 44456678888999999999999999999999999999999999999999999999999999999998 67888999888
Q ss_pred HHHhHHHHHHHHHHHHH
Q 044737 230 NALRIEEHRRKYDRLRR 246 (399)
Q Consensus 230 ~~~k~~e~~~~ye~l~~ 246 (399)
.+.++.++..+|++.-.
T Consensus 161 ~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALE 177 (304)
T ss_pred ccCcHHHHHHHHHhhhc
Confidence 89998888888876554
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=3e-11 Score=123.74 Aligned_cols=139 Identities=17% Similarity=0.168 Sum_probs=123.1
Q ss_pred cccCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 044737 108 AEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAK 186 (399)
Q Consensus 108 ~~~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~ 186 (399)
+++++.+....+.|...||.|--+++++.||++|.+||.++| .+-+|..+|.=+.....|+.|...|++||.++|++-.
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn 490 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN 490 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence 455566666778999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 187 GYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 187 a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
|||-+|.+|.++++++.|...|++|+.++|.+ .+...+..++.++++..++...|++.-.
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 99999999999999999999999999999998 4566777777888887777777766554
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=1.4e-09 Score=114.67 Aligned_cols=123 Identities=12% Similarity=-0.005 Sum_probs=65.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 044737 121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG 199 (399)
Q Consensus 121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg 199 (399)
+...|..+...|++++|+.+|.+|++++| ++.+|+++|.+|..+|++++|+..++++++++|.++.+++.++.+++.+|
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence 34455555555556566666666666655 55555555555555556655666666666665555555555555555555
Q ss_pred CHHHHHHHHHHHHhhC-CcHH-HHHHHHHHhHHHHhHHHHHHHHHH
Q 044737 200 HWEEAVHDLHVASKID-FDEE-IAAVLKKVEPNALRIEEHRRKYDR 243 (399)
Q Consensus 200 ~~eeA~~~l~~Al~ld-p~~~-~~~~lk~v~~~~~k~~e~~~~ye~ 243 (399)
++++|+..++++++.. |++. ....+..+...+++..+++..+++
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5555555555555543 3332 233344444444444444444433
No 32
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.24 E-value=3.2e-10 Score=93.37 Aligned_cols=102 Identities=20% Similarity=0.125 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S---AIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKT 190 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~---a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~ 190 (399)
++.+...|..++..|+|++|+..|.+++..+| + ..+++++|.++++.++|..|+..|.+++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 35778999999999999999999999999998 4 6789999999999999999999999999999885 678999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 191 ~g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
+|.++..++++++|+..|.++++..|++.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 99999999999999999999999999985
No 33
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.22 E-value=3.3e-10 Score=103.64 Aligned_cols=116 Identities=13% Similarity=0.130 Sum_probs=105.3
Q ss_pred cCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCC--HHHHHH
Q 044737 131 EGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH-AMLGH--WEEAVH 206 (399)
Q Consensus 131 ~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~-~~lg~--~eeA~~ 206 (399)
.++.++++..|.++++.+| +...|..+|.+|..+++++.|+..|++|++++|+++.+|+.+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 5778999999999999999 9999999999999999999999999999999999999999999985 67787 599999
Q ss_pred HHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 207 DLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 207 ~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
.|+++++++|++ .+...+..+....+++.++..+|+++-.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999998 5566777777888888888888887655
No 34
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.22 E-value=5.1e-11 Score=89.57 Aligned_cols=66 Identities=30% Similarity=0.386 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMK-KPNAAIRDATAALEINP 182 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~-~~~~Ai~d~~~Al~l~p 182 (399)
.|..|...|..++..++|++|+..|+++|+++| ++.+|+++|.||..++ +|.+|+.++++||+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 467899999999999999999999999999999 9999999999999999 79999999999999998
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.21 E-value=3.9e-10 Score=124.92 Aligned_cols=122 Identities=22% Similarity=0.208 Sum_probs=77.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 044737 125 AMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEA 204 (399)
Q Consensus 125 g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA 204 (399)
+..+...|++++|+.+|.+++.++|+..+|.++|.++.++|++++|+..|.+++.++|+++.+++++|.++..+|++++|
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 33344446666666666666666665556666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 205 VHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 205 ~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
+..|+++++++|++ .+...+..+...++++.++...|++.-+
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666666665 3445555555555555555555555433
No 36
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.21 E-value=2.2e-10 Score=87.77 Aligned_cols=98 Identities=34% Similarity=0.439 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML 198 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l 198 (399)
.+...|..++..+++.+|+..|.++++..| +..++.++|.+|...+++..|+..|++++.+.|.+..+++.+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 467889999999999999999999999999 8899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCc
Q 044737 199 GHWEEAVHDLHVASKIDFD 217 (399)
Q Consensus 199 g~~eeA~~~l~~Al~ldp~ 217 (399)
++++.|...+.++++++|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988874
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=6.6e-10 Score=109.86 Aligned_cols=124 Identities=21% Similarity=0.222 Sum_probs=113.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 044737 123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHW 201 (399)
Q Consensus 123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~ 201 (399)
-.||-|.-.+++++||..|.+|+++|| ...+|...|.=|+.+++-.+|+..|++||+++|.+-+|||-+|++|..++-+
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh 414 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMH 414 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcch
Confidence 568888888899999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 202 EEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 202 eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
.=|+-.|++|+++-|.| ..+..|.++...+.++.++.+.|++.-.
T Consensus 415 ~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 415 FYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 99999999999999988 5688999999999999999988887655
No 38
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.20 E-value=3.8e-10 Score=97.95 Aligned_cols=106 Identities=11% Similarity=0.006 Sum_probs=93.6
Q ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 044737 138 IELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDF 216 (399)
Q Consensus 138 i~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp 216 (399)
..+|+++|+++| + +.++|.++...|+|++|+..|++++.++|++..+|+.+|.++..+|+|++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 367899999999 5 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred cH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 217 DE-EIAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 217 ~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
++ ..+..+..+...+++..++...|...-.
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 98 5566777777777777777777766543
No 39
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.19 E-value=5.2e-10 Score=93.52 Aligned_cols=104 Identities=29% Similarity=0.402 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHH
Q 044737 114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS----AKGY 188 (399)
Q Consensus 114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----~~a~ 188 (399)
.++....+-.+|..+...|+++.|++.|.++|.+.| ++.+|.|||.+|.-.++.++|+.|+++|+++..+. ..+|
T Consensus 39 ~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~ 118 (175)
T KOG4555|consen 39 AIKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAF 118 (175)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHH
Confidence 356667788899999999999999999999999999 99999999999999999999999999999997654 3589
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737 189 KTRGMAHAMLGHWEEAVHDLHVASKIDFD 217 (399)
Q Consensus 189 ~~~g~a~~~lg~~eeA~~~l~~Al~ldp~ 217 (399)
..||.+|+.+|+.+.|..+|+.|-++-..
T Consensus 119 vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 119 VQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 99999999999999999999999888654
No 40
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.19 E-value=7.1e-10 Score=98.93 Aligned_cols=105 Identities=20% Similarity=0.249 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 044737 114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYK 189 (399)
Q Consensus 114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~ 189 (399)
....+..+...|..+...|+|++|+.+|.+++.+.| ...+|.++|.+|.++|+|++|+..+.+++.++|++..++.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 345677899999999999999999999999999876 2579999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC--------------HHHHHHHHHHHHhhCCcH
Q 044737 190 TRGMAHAMLGH--------------WEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 190 ~~g~a~~~lg~--------------~eeA~~~l~~Al~ldp~~ 218 (399)
.+|.+|..+++ +++|+..+++++.++|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999988 677888888888888887
No 41
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=1e-10 Score=118.34 Aligned_cols=114 Identities=19% Similarity=0.252 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML 198 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l 198 (399)
.....|..|+-.++|++||++|+.||..+| +..+|..+|..+..-.+..+||..|++||+|.|.++.++|++|.++..+
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL 511 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh
Confidence 345689999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCc-----------HHHHHHHHHHhHHHHh
Q 044737 199 GHWEEAVHDLHVASKIDFD-----------EEIAAVLKKVEPNALR 233 (399)
Q Consensus 199 g~~eeA~~~l~~Al~ldp~-----------~~~~~~lk~v~~~~~k 233 (399)
|.|++|+..|-.||.+.+. +.+|..|+.+.....+
T Consensus 512 G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 512 GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 9999999999999999765 3467777765544433
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=99.16 E-value=8.3e-10 Score=116.28 Aligned_cols=88 Identities=18% Similarity=0.058 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044737 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHV 210 (399)
Q Consensus 132 g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~ 210 (399)
+++.+|+..+.+|++++| ++.+|..+|.++...+++++|+..|++|++++|+++.+|+.+|.+|..+|++++|+..|++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 458999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCcHH
Q 044737 211 ASKIDFDEE 219 (399)
Q Consensus 211 Al~ldp~~~ 219 (399)
+++++|.+.
T Consensus 398 Al~l~P~~~ 406 (553)
T PRK12370 398 CLKLDPTRA 406 (553)
T ss_pred HHhcCCCCh
Confidence 999999974
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.14 E-value=3e-09 Score=96.45 Aligned_cols=126 Identities=18% Similarity=0.185 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH 195 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~ 195 (399)
.+..+...|..++..++|++|+..|.+++..+| +..++..+|.+|..++++++|+..+.++++++|.+..+++++|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 356778889999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCc--H-HHHHHHHHHhHHHHhHHHHHHHHH
Q 044737 196 AMLGHWEEAVHDLHVASKIDFD--E-EIAAVLKKVEPNALRIEEHRRKYD 242 (399)
Q Consensus 196 ~~lg~~eeA~~~l~~Al~ldp~--~-~~~~~lk~v~~~~~k~~e~~~~ye 242 (399)
...|++++|+..|++++..... . .....+..+....++..+....+.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLT 159 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999886422 1 223334444444444444444443
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.1e-09 Score=108.36 Aligned_cols=128 Identities=20% Similarity=0.181 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM 197 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~ 197 (399)
..|-..|-.|...++-..||..|++||.++| +..+|+.+|++|--++.+--|+-.+++|+.+.|.+...|..+|.||..
T Consensus 365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k 444 (559)
T KOG1155|consen 365 SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK 444 (559)
T ss_pred HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 3455778889999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 198 LGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 198 lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
+++.++|+++|.+|+...-.+ .+...|.++.++++...++..+|++.-+
T Consensus 445 l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 445 LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999998776 5567788888999998888888877655
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.14 E-value=2.2e-09 Score=113.29 Aligned_cols=102 Identities=22% Similarity=0.215 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH 195 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~ 195 (399)
.+..+...||.+|..|++++|...+.++|+.+| +..+|+.+|.+|-++|+.+.|+...-.|-.++|.+..-|.+++...
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 377889999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCcH
Q 044737 196 AMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 196 ~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
..+|.|..|.-+|.+|++++|.+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n 240 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSN 240 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999998
No 46
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.14 E-value=1.3e-08 Score=92.36 Aligned_cols=127 Identities=20% Similarity=0.202 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEIN--PDSAKGYKTRGMA 194 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~--p~~~~a~~~~g~a 194 (399)
+..+...|..++..|++++|+..|.+++.++| +..++.+++.+|...+++++|+..+.+++... +.....++.+|.+
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 35677889999999999999999999999999 99999999999999999999999999999864 5567789999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737 195 HAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRL 244 (399)
Q Consensus 195 ~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l 244 (399)
+..+|++++|...|.++++++|++ .....+..+....++..+....+++.
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 195 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERY 195 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999987 44555666655566666555555543
No 47
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.13 E-value=4.2e-09 Score=116.85 Aligned_cols=102 Identities=13% Similarity=-0.003 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~ 196 (399)
+..+...|..+.+.|++++|+..|.+++.++| +..++.++|.++..+|++++|+..|++|++++|+++.+++++|.++.
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34567888999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCcHH
Q 044737 197 MLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 197 ~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
.+|++++|+..|+++++++|++.
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999873
No 48
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.13 E-value=2.6e-09 Score=114.35 Aligned_cols=132 Identities=10% Similarity=-0.078 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737 115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM 193 (399)
Q Consensus 115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~ 193 (399)
+..+..++..|......|+|++|..++..++.++| +..++.+++.++.+++++++|+..|++++..+|+++.+++.+|.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 44577888999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 194 AHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 194 a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
++..+|+|++|+..|++++..+|++ .++-.+..+.....+..++...|++.-.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999886 4455566666667777777777766543
No 49
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.12 E-value=2.5e-09 Score=94.91 Aligned_cols=104 Identities=20% Similarity=0.126 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 044737 115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190 (399)
Q Consensus 115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~ 190 (399)
...+..+...|..++..++|++|+..|.+|+.+.| .+.+|.++|.+|..++++++|+..|.+|+.++|.+..++..
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 45688899999999999999999999999999866 35689999999999999999999999999999999999999
Q ss_pred HHHHHH-------hcCCHH-------HHHHHHHHHHhhCCcH
Q 044737 191 RGMAHA-------MLGHWE-------EAVHDLHVASKIDFDE 218 (399)
Q Consensus 191 ~g~a~~-------~lg~~e-------eA~~~l~~Al~ldp~~ 218 (399)
+|.++. .+|+++ +|+..|++++.++|++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999998 777877 5555666677788865
No 50
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.10 E-value=3.3e-09 Score=96.84 Aligned_cols=133 Identities=19% Similarity=0.180 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737 114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192 (399)
Q Consensus 114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g 192 (399)
....+.....+|..|+..|++..|...+++||+++| +..+|.-||.+|.++|+.+.|.+.|++|++++|++...+.+.|
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 345567888999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCC--c-HHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 193 MAHAMLGHWEEAVHDLHVASKIDF--D-EEIAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 193 ~a~~~lg~~eeA~~~l~~Al~ldp--~-~~~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
..++.+|+|++|...|++|+..-. . ...++.+..+.-+.++...++.+|++.-+
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 999999999999999999987431 1 13455566665555665666666555433
No 51
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.08 E-value=9.7e-09 Score=95.70 Aligned_cols=102 Identities=24% Similarity=0.217 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SA---IMYATRASVYIKMKKPNAAIRDATAALEINPDSAK---GYKT 190 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a---~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~---a~~~ 190 (399)
+..+...|..++..|+|++|+..|.+++..+| +. .+++.+|.+|+++++|++|+..|+++++.+|+++. +|+.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 45789999999999999999999999999999 53 68899999999999999999999999999998876 7999
Q ss_pred HHHHHHhc--------CCHHHHHHHHHHHHhhCCcHH
Q 044737 191 RGMAHAML--------GHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 191 ~g~a~~~l--------g~~eeA~~~l~~Al~ldp~~~ 219 (399)
+|.++... +++++|+..|+++++.+|++.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 149 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE 149 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence 99999876 889999999999999999984
No 52
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.07 E-value=5.9e-09 Score=111.91 Aligned_cols=127 Identities=15% Similarity=0.098 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737 119 AEAKAKAMEAISEGKLDE----AIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM 193 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~----Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~ 193 (399)
..+...|..++..|++++ |+..|++++.++| ++.++.++|.++..+|++++|+..+++++.++|+++.+++.+|.
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344556777777777774 6777777777777 77777777777777777777777777777777777777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCcHHHHH-HHHHHhHHHHhHHHHHHHHHHHH
Q 044737 194 AHAMLGHWEEAVHDLHVASKIDFDEEIAA-VLKKVEPNALRIEEHRRKYDRLR 245 (399)
Q Consensus 194 a~~~lg~~eeA~~~l~~Al~ldp~~~~~~-~lk~v~~~~~k~~e~~~~ye~l~ 245 (399)
+|..+|++++|+..|++++..+|++.... .+..+....++..++...|+.+-
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777777777777777777763322 22334445555555555555443
No 53
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.06 E-value=3.9e-09 Score=89.54 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=93.2
Q ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737 139 ELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD 217 (399)
Q Consensus 139 ~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~ 217 (399)
++|.+++.++| +..++..+|.+++..+++.+|+..+++++.++|+++.+|+++|.++..++++++|+..|+++++++|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 47889999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737 218 E-EIAAVLKKVEPNALRIEEHRRKYDRLR 245 (399)
Q Consensus 218 ~-~~~~~lk~v~~~~~k~~e~~~~ye~l~ 245 (399)
+ .....+..+....++...+...++..-
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 445566666666666666655554443
No 54
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.06 E-value=6.1e-10 Score=87.31 Aligned_cols=80 Identities=24% Similarity=0.330 Sum_probs=72.9
Q ss_pred cCCHHHHHHHHHHHHHhCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044737 131 EGKLDEAIELSTEAIMLNP-S--AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHD 207 (399)
Q Consensus 131 ~g~~~~Ai~~y~~Ai~l~P-~--a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~ 207 (399)
.++|+.|+..|.+++...| + ..++.++|.||+++++|.+|+..+++ +.+++.+...++.+|.|+..+|+|++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6899999999999999999 5 66788899999999999999999999 999999999999999999999999999999
Q ss_pred HHHH
Q 044737 208 LHVA 211 (399)
Q Consensus 208 l~~A 211 (399)
|++|
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 55
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.06 E-value=3.8e-09 Score=113.36 Aligned_cols=122 Identities=17% Similarity=0.128 Sum_probs=107.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737 123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNA----AIRDATAALEINPDSAKGYKTRGMAHAM 197 (399)
Q Consensus 123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~----Ai~d~~~Al~l~p~~~~a~~~~g~a~~~ 197 (399)
..+..++..|++++|+..|.+++.++| +..++.++|.+|..+|++.+ |+..|++++.++|+++.++..+|.++..
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 457788999999999999999999999 99999999999999999986 8999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737 198 LGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRL 244 (399)
Q Consensus 198 lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l 244 (399)
+|++++|+..|++++.++|++ .+...+..+....++..++...|+++
T Consensus 297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999998 44556666666666666666555443
No 56
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.8e-09 Score=105.57 Aligned_cols=132 Identities=23% Similarity=0.235 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 044737 115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S------------AIMYATRASVYIKMKKPNAAIRDATAALEIN 181 (399)
Q Consensus 115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~------------a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~ 181 (399)
...+.+++.+|..++...+.+.|+.+|+++|+++| . ...+.++|.-.++.|+|..|...|+.||.++
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 34578899999999999999999999999999999 2 3567788999999999999999999999999
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 182 PDS----AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 182 p~~----~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
|++ ++.|++|+.++..+|+..+|+.++..|++||+.. ........+.-.+.+++++.++|+...+
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 986 5789999999999999999999999999999986 3333444456678888888888876554
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=3.5e-09 Score=102.85 Aligned_cols=113 Identities=16% Similarity=0.120 Sum_probs=95.6
Q ss_pred CHHHHHHHHHHHHH---hCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044737 133 KLDEAIELSTEAIM---LNP--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHD 207 (399)
Q Consensus 133 ~~~~Ai~~y~~Ai~---l~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~ 207 (399)
..+.+|..++++|. ++| .+.+|+++|.+|..+|++..|+.+|+++++++|+++.+|+.+|.++..+|+|++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56778999999996 555 5889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737 208 LHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLR 245 (399)
Q Consensus 208 l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~ 245 (399)
|+++++++|++ .++..+..+....++..++...+++.-
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY 159 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999998 444555555555566666655554443
No 58
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=2.1e-09 Score=110.33 Aligned_cols=99 Identities=21% Similarity=0.207 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML 198 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l 198 (399)
++-..|-.+.....|+.|..+|..||..+| ...+|+.+|.+|+++++++.|.-.+++|+++||.+....+..|.++.++
T Consensus 457 ayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~ 536 (638)
T KOG1126|consen 457 AYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQL 536 (638)
T ss_pred hhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHh
Confidence 444455555555555555555555555555 5555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhhCCcH
Q 044737 199 GHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 199 g~~eeA~~~l~~Al~ldp~~ 218 (399)
|+.++|+..|++|+.+||.|
T Consensus 537 k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 537 KRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred hhhhHHHHHHHHHHhcCCCC
Confidence 55555555555555555555
No 59
>PLN02789 farnesyltranstransferase
Probab=99.02 E-value=1.4e-08 Score=99.59 Aligned_cols=117 Identities=16% Similarity=0.129 Sum_probs=85.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH--HH
Q 044737 128 AISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMK-KPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHW--EE 203 (399)
Q Consensus 128 ~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~-~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~--ee 203 (399)
+...+++++|+..++++|.++| +..+|..|+.++..++ .+++++..++++++.+|++..+|+.|+.++..+++. ++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 4556677888888888888888 8888888888888877 567888888888888888888888888777777763 66
Q ss_pred HHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737 204 AVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRL 244 (399)
Q Consensus 204 A~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l 244 (399)
++..+.++++++|.| .++.....+...++...+...++.++
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~ 168 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQL 168 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 777777888888877 55655555555555555555555443
No 60
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.00 E-value=1.1e-08 Score=97.65 Aligned_cols=101 Identities=15% Similarity=0.029 Sum_probs=92.6
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 044737 119 AEAKAKAMEA-ISEGKLDEAIELSTEAIMLNP-S---AIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKT 190 (399)
Q Consensus 119 ~~~k~~g~~~-~~~g~~~~Ai~~y~~Ai~l~P-~---a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~ 190 (399)
..++..|..+ ++.++|++|+..|...|...| + ..+++++|.+|+..++|..|+..|.+++...|++ +.+|+.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4567777776 678999999999999999999 4 6899999999999999999999999999998875 779999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 191 ~g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
+|.++..+|+++.|+..|+++++..|+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 99999999999999999999999999985
No 61
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.99 E-value=1.8e-09 Score=80.14 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=48.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 156 TRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 156 nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
.+|.++++.|+|++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 467777778888888888888888888888888888888888888888888888888877775
No 62
>PRK15331 chaperone protein SicA; Provisional
Probab=98.98 E-value=1.3e-08 Score=89.08 Aligned_cols=105 Identities=14% Similarity=0.080 Sum_probs=96.5
Q ss_pred cCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 044737 110 VTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGY 188 (399)
Q Consensus 110 ~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~ 188 (399)
++++.+ +.....|-.+|..|+|++|...|+-...++| +...|..+|.|+..+++|+.|+..|..|..++++++..+
T Consensus 32 is~~~l---e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 32 IPQDMM---DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred CCHHHH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 445444 5678889999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 189 KTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 189 ~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
++.|.||+.+++.+.|..+|..++.. |.+
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~~-~~~ 137 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNER-TED 137 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHhC-cch
Confidence 99999999999999999999999983 443
No 63
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.97 E-value=1.8e-08 Score=93.93 Aligned_cols=127 Identities=16% Similarity=0.055 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CH---HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHH
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SA---IMYATRASVYIKM--------KKPNAAIRDATAALEINPDSAK 186 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a---~~~~nra~a~~~l--------~~~~~Ai~d~~~Al~l~p~~~~ 186 (399)
..+...|..++..++|++|+..|.++++.+| +. .+++.+|.+++.. +++..|+..+++++..+|++..
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 150 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY 150 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh
Confidence 4678899999999999999999999999999 44 3789999999987 7899999999999999999865
Q ss_pred HH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCcH----HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737 187 GY-----------------KTRGMAHAMLGHWEEAVHDLHVASKIDFDE----EIAAVLKKVEPNALRIEEHRRKYDRLR 245 (399)
Q Consensus 187 a~-----------------~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~----~~~~~lk~v~~~~~k~~e~~~~ye~l~ 245 (399)
++ +.+|.+|...|++.+|+..|+++++..|++ .++..+..+...+++..+...+++.+.
T Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 467888999999999999999999998864 344556666666666666655555443
No 64
>PLN02789 farnesyltranstransferase
Probab=98.97 E-value=1.1e-08 Score=100.33 Aligned_cols=114 Identities=14% Similarity=0.160 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHH
Q 044737 114 KREAAAEAKAKAMEAISEG-KLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKP--NAAIRDATAALEINPDSAKGYK 189 (399)
Q Consensus 114 ~~~~a~~~k~~g~~~~~~g-~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~--~~Ai~d~~~Al~l~p~~~~a~~ 189 (399)
+.+....|..++..+...+ ++.+|+..++++|..+| +..+|+.|+.++.+++++ .+++..++++|+++|.+..+|.
T Consensus 67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~ 146 (320)
T PLN02789 67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWS 146 (320)
T ss_pred CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHH
Confidence 3445678889999999998 68999999999999999 999999999999999874 7889999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHH
Q 044737 190 TRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKV 227 (399)
Q Consensus 190 ~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v 227 (399)
.|+.++..+++|++|+.++.+++++||.| .++.....+
T Consensus 147 ~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~v 185 (320)
T PLN02789 147 HRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFV 185 (320)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHH
Confidence 99999999999999999999999999998 444444333
No 65
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.96 E-value=2.5e-08 Score=99.54 Aligned_cols=124 Identities=17% Similarity=0.085 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHh
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS-AKGYKTRGMAHAM 197 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~-~~a~~~~g~a~~~ 197 (399)
.+...|..++..+++++|+..|.++++++| ...++..+|.+|.+.|++++|+..+.+++.++|.+ ..++..++.+|..
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 345566677777777777777777777777 77777777777777777777777777777777765 3456677777777
Q ss_pred cCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHHHHHHH
Q 044737 198 LGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDR 243 (399)
Q Consensus 198 lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~ye~ 243 (399)
+|++++|+..++++++++|+......+..+....++..++...++.
T Consensus 262 ~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 262 LGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7777777777777777777765444444544444555555554443
No 66
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.96 E-value=1.1e-08 Score=109.54 Aligned_cols=127 Identities=12% Similarity=0.009 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA 194 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a 194 (399)
+.+......+..+++.+++++|+..+.+++..+| ++..++.+|.++.++|+|++|+..|++++..+|+++.+|..+|.+
T Consensus 118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~ 197 (694)
T PRK15179 118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQS 197 (694)
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 4456777999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q 044737 195 HAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRRE 247 (399)
Q Consensus 195 ~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~ye~l~~~ 247 (399)
+..+|+.++|...|++|+++.-+-. ++....+.++..-...|+++..+
T Consensus 198 l~~~G~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 245 (694)
T PRK15179 198 LTRRGALWRARDVLQAGLDAIGDGA-----RKLTRRLVDLNADLAALRRLGVE 245 (694)
T ss_pred HHHcCCHHHHHHHHHHHHHhhCcch-----HHHHHHHHHHHHHHHHHHHcCcc
Confidence 9999999999999999999886642 22233334444444555555543
No 67
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.95 E-value=3.7e-09 Score=101.46 Aligned_cols=122 Identities=25% Similarity=0.177 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~ 196 (399)
+.-+...|..+.+.|++++|+.+|.+|++++| +..++..++.+++..+++.++...+.......|+++..|..+|.++.
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 225 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYL 225 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhc
Confidence 44566788888888888888888888888888 88888888888888888888777777777777777778888888888
Q ss_pred hcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhHHHHhHHHHHH
Q 044737 197 MLGHWEEAVHDLHVASKIDFDEE-IAAVLKKVEPNALRIEEHRR 239 (399)
Q Consensus 197 ~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~~~~k~~e~~~ 239 (399)
.+|++++|+..|+++++.+|+|. +...+..+....++..++..
T Consensus 226 ~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 226 QLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc
Confidence 88888888888888888888774 34455555555555444433
No 68
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.93 E-value=2e-08 Score=93.34 Aligned_cols=114 Identities=20% Similarity=0.167 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML 198 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l 198 (399)
-+...|..++..|+|..|+..+.++..+.| ++.+|.-+|.+|.++|+++.|...|.+++++.|..+.++.++|..|...
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence 344589999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHh
Q 044737 199 GHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALR 233 (399)
Q Consensus 199 g~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k 233 (399)
|+++.|...+..+...-+.+ .+...|..+-.....
T Consensus 182 gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 182 GDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD 217 (257)
T ss_pred CCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC
Confidence 99999999999998888755 555555555443333
No 69
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.93 E-value=1.2e-07 Score=94.79 Aligned_cols=127 Identities=17% Similarity=0.076 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S-----AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTR 191 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~-----a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~ 191 (399)
...+...+..+.+.|+|++|+..|.+++...| + ..+|.++|.+++..+++++|+..|+++++++|++..+++.+
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 220 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILL 220 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHH
Confidence 34567788999999999999999999999887 3 34677899999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCcHH--HHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737 192 GMAHAMLGHWEEAVHDLHVASKIDFDEE--IAAVLKKVEPNALRIEEHRRKYDRL 244 (399)
Q Consensus 192 g~a~~~lg~~eeA~~~l~~Al~ldp~~~--~~~~lk~v~~~~~k~~e~~~~ye~l 244 (399)
|.+|...|++++|+..|++++.++|++. +...+..+....++..+....+++.
T Consensus 221 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 221 GDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999998762 2334444444445555555554443
No 70
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.91 E-value=4.3e-09 Score=78.08 Aligned_cols=63 Identities=24% Similarity=0.318 Sum_probs=59.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 044737 123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA 185 (399)
Q Consensus 123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~ 185 (399)
.+|..++..|+|++|+..|.++++.+| +..+|..+|.|++.+|++.+|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 578999999999999999999999999 999999999999999999999999999999999875
No 71
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.91 E-value=4.3e-08 Score=106.49 Aligned_cols=127 Identities=18% Similarity=0.172 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA 194 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a 194 (399)
..+..+...|..++..|+|++|+..|.+++..+| +..++..+|.+++..++|++|+..++++++.+|.++.+|+.+|.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 202 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDL 202 (899)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3456788899999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhHHHHhHHHHHHHHH
Q 044737 195 HAMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKVEPNALRIEEHRRKYD 242 (399)
Q Consensus 195 ~~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~~~~k~~e~~~~ye 242 (399)
+...|++++|+..|++++.++|++. ....+..+.-..++..++...++
T Consensus 203 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 251 (899)
T TIGR02917 203 LLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHAD 251 (899)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999873 33334333333344444444333
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.89 E-value=3.7e-08 Score=90.08 Aligned_cols=131 Identities=17% Similarity=0.135 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI--NPDSAKGYKTRG 192 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l--~p~~~~a~~~~g 192 (399)
.....|..+|..|-+.|+.+.|-+.|.+|+.++| +..+++|.|.-++.+|+|++|...|++|+.. .+..+..|-++|
T Consensus 67 s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G 146 (250)
T COG3063 67 SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLG 146 (250)
T ss_pred ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhH
Confidence 3456788899999999999999999999999999 9999999999999999999999999999984 244578999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 193 MAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 193 ~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
.|..+.|+++.|..+|+++++++|+. .....+...+-..+.+..++-++++...
T Consensus 147 ~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 147 LCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred HHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 99999999999999999999999997 3333333434444455555555555543
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.1e-08 Score=103.39 Aligned_cols=107 Identities=21% Similarity=0.231 Sum_probs=96.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737 121 AKAKAMEAISEGKLDEAIELSTEAIMLNP--------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192 (399)
Q Consensus 121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P--------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g 192 (399)
+...|..+|..+.|.+|+.+|..++..-+ ....+.|+|.+|.++++|++||..+++||.+.|.++.+|...|
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig 496 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG 496 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence 45789999999999999999999995422 4677999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHH
Q 044737 193 MAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKV 227 (399)
Q Consensus 193 ~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v 227 (399)
.+|..+|+++.|+..|.+||.++|+| -+..+|+..
T Consensus 497 ~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 497 YIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 99999999999999999999999999 456666654
No 74
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.88 E-value=5.1e-08 Score=111.12 Aligned_cols=123 Identities=17% Similarity=0.120 Sum_probs=96.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------
Q 044737 122 KAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA------ 194 (399)
Q Consensus 122 k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a------ 194 (399)
...|..+++.|++++|+.+|.+++.++| +..++.++|.+|..+|++++|+..|+++++++|++..++..++.+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 4567888899999999999999999999 888899999999999999999999999999999987776554443
Q ss_pred ------------------------------------HHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHH
Q 044737 195 ------------------------------------HAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEH 237 (399)
Q Consensus 195 ------------------------------------~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~ 237 (399)
+...|++++|+..|+++++++|++ .+...+..+....++..++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 445789999999999999999987 3444555555555555555
Q ss_pred HHHHHHH
Q 044737 238 RRKYDRL 244 (399)
Q Consensus 238 ~~~ye~l 244 (399)
...++++
T Consensus 515 ~~~l~~a 521 (1157)
T PRK11447 515 DALMRRL 521 (1157)
T ss_pred HHHHHHH
Confidence 5555544
No 75
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.87 E-value=4.2e-08 Score=111.85 Aligned_cols=121 Identities=19% Similarity=0.219 Sum_probs=75.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--------------
Q 044737 123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG-------------- 187 (399)
Q Consensus 123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a-------------- 187 (399)
.+|..++..|++++|+..|.++++++| +..++..+|.+|++++++++|+..|+++++++|++...
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 346777777777777777777777777 77777777777777777777777777777777765321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHH
Q 044737 188 YKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDR 243 (399)
Q Consensus 188 ~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~ 243 (399)
+..+|.++...|++++|+..|+++++++|++ .+...+..+....++..++...|++
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1233555556666666666666666666655 2233344444444444444444433
No 76
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.86 E-value=5.2e-08 Score=106.51 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~ 196 (399)
+..+...|..+...+++.+|+.+|.++|.++| +..++..++.+++..+++.+|+..++++++.+|+++. |+.+|.++.
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 34578899999999999999999999999999 9999999999999999999999999999999999999 999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCcHH
Q 044737 197 MLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 197 ~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
..|++++|+..|+++++++|++.
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~ 150 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQ 150 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999984
No 77
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.86 E-value=5.6e-08 Score=105.61 Aligned_cols=126 Identities=16% Similarity=0.123 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML 198 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l 198 (399)
.+...+..+...|++.+|+..+.+++..+| +..+++++|.+|..+|++.+|+..|+++++.+|+++.++..++.++..+
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 445667777778888888888888888888 7778888888888888888888888888888888887888888888777
Q ss_pred CCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 199 GHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 199 g~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
++ .+|+..|++++.+.|++ .....+..+....++..++...|++.-.
T Consensus 818 ~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 818 KD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred Cc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77 67888888888777776 3444555555555566666665555443
No 78
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.86 E-value=6.1e-08 Score=83.06 Aligned_cols=102 Identities=21% Similarity=0.200 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA---KGYKT 190 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~---~a~~~ 190 (399)
+..+...|..+++.|+|.+|++.|+......| ...+...++.+|++.++|.+|+..+++-|+|+|+++ -+||.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 35788999999999999999999999999988 678999999999999999999999999999999886 48999
Q ss_pred HHHHHHhcCC---------------HHHHHHHHHHHHhhCCcHH
Q 044737 191 RGMAHAMLGH---------------WEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 191 ~g~a~~~lg~---------------~eeA~~~l~~Al~ldp~~~ 219 (399)
+|.++..+.. ...|..+|++.++.-|++.
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 9999999887 8889999999999999874
No 79
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.82 E-value=1.3e-07 Score=82.52 Aligned_cols=102 Identities=14% Similarity=0.011 Sum_probs=88.9
Q ss_pred HhC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHH
Q 044737 146 MLN-P-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAA 222 (399)
Q Consensus 146 ~l~-P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~ 222 (399)
.+. + .....+.+|..++..|++++|.+.|+.++.++|.++..|+++|.++..+|+|.+|+..|.+|+.++|++ ....
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345 5 667788899999999999999999999999999999999999999999999999999999999999998 4566
Q ss_pred HHHHHhHHHHhHHHHHHHHHHHHHH
Q 044737 223 VLKKVEPNALRIEEHRRKYDRLRRE 247 (399)
Q Consensus 223 ~lk~v~~~~~k~~e~~~~ye~l~~~ 247 (399)
.+..+.-.++++...+..++.....
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777888888888777655443
No 80
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.81 E-value=1.2e-07 Score=89.20 Aligned_cols=102 Identities=17% Similarity=0.095 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTR 191 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~ 191 (399)
..+++.|..+++.|+|..|...|..-|...| .+.+++|+|.+++.+|+|+.|...|..+++-.|++ +.+++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4489999999999999999999999999999 68999999999999999999999999999998877 5689999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCcHHH
Q 044737 192 GMAHAMLGHWEEAVHDLHVASKIDFDEEI 220 (399)
Q Consensus 192 g~a~~~lg~~eeA~~~l~~Al~ldp~~~~ 220 (399)
|.+...+++.++|...|+++++.-|+.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 99999999999999999999999999853
No 81
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=1.9e-08 Score=104.32 Aligned_cols=125 Identities=19% Similarity=0.260 Sum_probs=108.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 044737 122 KAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGH 200 (399)
Q Consensus 122 k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~ 200 (399)
+..|.-.++.++|.+|.++++.+++++| ....|+++|.|.++++++..|+.+|.+++.++|++..+|.+++.+|..+++
T Consensus 489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~ 568 (777)
T KOG1128|consen 489 RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK 568 (777)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh
Confidence 3444555677999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 201 WEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 201 ~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
-.+|...+.+|++.++++ .+++..-.|......++.+...|.++-.
T Consensus 569 k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 569 KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999999999999887 5666655666666666666666655543
No 82
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.79 E-value=4.1e-08 Score=74.32 Aligned_cols=59 Identities=29% Similarity=0.469 Sum_probs=29.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 160 VYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 160 a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
+|++.++|..|+..+++++.++|+++.+|+.+|.++..+|+|.+|+.+|++++++.|++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 34444445555555555555555555555555555555555555555555555555444
No 83
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.79 E-value=1.1e-07 Score=103.99 Aligned_cols=102 Identities=15% Similarity=0.013 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM 197 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~ 197 (399)
..+..+|..+...|++++|+..|.+++...| +..++.++|.++...|++.+|+..+++++.++|++..+++.+|.++..
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 4556788899999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCcHHH
Q 044737 198 LGHWEEAVHDLHVASKIDFDEEI 220 (399)
Q Consensus 198 lg~~eeA~~~l~~Al~ldp~~~~ 220 (399)
+++|++|...++++++..|++..
T Consensus 440 ~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999963
No 84
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.77 E-value=9.5e-07 Score=83.43 Aligned_cols=102 Identities=17% Similarity=0.133 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SA---IMYATRASVYIKMKKPNAAIRDATAALEINPDSA---KGYKT 190 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a---~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~---~a~~~ 190 (399)
+..+...|..++..|+|++|+..|.+.+...| .. .+.+++|.+|+++++|..|+..+++.|+++|+++ .+++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 34578899999999999999999999999999 43 4458999999999999999999999999999874 58999
Q ss_pred HHHHHHhcC---------------C---HHHHHHHHHHHHhhCCcHH
Q 044737 191 RGMAHAMLG---------------H---WEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 191 ~g~a~~~lg---------------~---~eeA~~~l~~Al~ldp~~~ 219 (399)
+|.++..++ + ...|+..|+..++.-|+..
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 999876554 1 2578899999999999874
No 85
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.76 E-value=2.7e-08 Score=74.25 Aligned_cols=64 Identities=27% Similarity=0.307 Sum_probs=41.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737 129 ISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192 (399)
Q Consensus 129 ~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g 192 (399)
++.|+|++|+..|++++..+| +..+++.+|.||++.|++++|...+.+++..+|+++.++.-++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 456666666666666666666 6666666666666666666666666666666666655554444
No 86
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.76 E-value=4.5e-08 Score=74.13 Aligned_cols=69 Identities=25% Similarity=0.425 Sum_probs=64.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737 125 AMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM 193 (399)
Q Consensus 125 g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~ 193 (399)
...|++.++|++|+..++++|.++| ++.+|..+|.||+++|+|.+|+.+++++++++|++..+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4678999999999999999999999 99999999999999999999999999999999999987766553
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=9.8e-08 Score=96.98 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Q 044737 115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI------------- 180 (399)
Q Consensus 115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l------------- 180 (399)
.+.++.|...|.+.....+-..||..+.+|++++| +..++..+|.+|...+.-..|+..+.+=|..
T Consensus 316 P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~ 395 (579)
T KOG1125|consen 316 PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGEN 395 (579)
T ss_pred hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcc
Confidence 34456666666666666666666666666666666 6666666666665555444444444333222
Q ss_pred ----------------------------CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhH
Q 044737 181 ----------------------------NP--DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEP 229 (399)
Q Consensus 181 ----------------------------~p--~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~ 229 (399)
+| .+++.+.-+|.+|...++|+.|+.+|+.||..+|+| .+|..|.....
T Consensus 396 ~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA 475 (579)
T KOG1125|consen 396 EDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA 475 (579)
T ss_pred ccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence 22 235677778888999999999999999999999998 56888888877
Q ss_pred HHHhHHHHHHHHHHHHH
Q 044737 230 NALRIEEHRRKYDRLRR 246 (399)
Q Consensus 230 ~~~k~~e~~~~ye~l~~ 246 (399)
+-.+..++...|.+.-.
T Consensus 476 N~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 476 NGNRSEEAISAYNRALQ 492 (579)
T ss_pred CCcccHHHHHHHHHHHh
Confidence 77777777777765543
No 88
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.75 E-value=5.4e-07 Score=82.69 Aligned_cols=103 Identities=22% Similarity=0.197 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA---KGYK 189 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~---~a~~ 189 (399)
.+..+...|..++..|+|.+|+..|++.+...| ...+...+|.+|++.++|..|+..+++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 457889999999999999999999999999988 478899999999999999999999999999999875 5899
Q ss_pred HHHHHHHhcC-----------CHHHHHHHHHHHHhhCCcHH
Q 044737 190 TRGMAHAMLG-----------HWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 190 ~~g~a~~~lg-----------~~eeA~~~l~~Al~ldp~~~ 219 (399)
.+|.++..+. ...+|+..|+..++.-|++.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 9999976653 34589999999999999873
No 89
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=1.7e-06 Score=77.71 Aligned_cols=117 Identities=21% Similarity=0.214 Sum_probs=88.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHH
Q 044737 121 AKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA-----KGYKTRGMAH 195 (399)
Q Consensus 121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~-----~a~~~~g~a~ 195 (399)
+...+..-|...+-++++...++ +..-|.-+++.|+|.+|..-|..||.+.|... -.|.+||.|+
T Consensus 75 Lmae~E~i~~deek~k~~~kad~----------lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~ 144 (271)
T KOG4234|consen 75 LMAEIEKIFSDEEKDKAIEKADS----------LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAAL 144 (271)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHH----------HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHH
Confidence 33344444444444555554433 23457778999999999999999999998763 4799999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q 044737 196 AMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRRE 247 (399)
Q Consensus 196 ~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~~ 247 (399)
.++++|+.|+.++.+|++|+|.+ .+......+.++..++.++...|+.+...
T Consensus 145 iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 145 IKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999987 33344455667778888888888877663
No 90
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=2.8e-06 Score=84.24 Aligned_cols=126 Identities=13% Similarity=0.012 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM 197 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~ 197 (399)
+-+.+.++.|-...+..+||++|.++..+-| +..+++.+|..|-+-|+-..|.+++-...+.-|.+....-|+|.-|..
T Consensus 559 evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid 638 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID 638 (840)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh
Confidence 3344444444444555555555555554444 444444444443333333333333333333333333333444444444
Q ss_pred cCCHHHHHHHHHHHHhhCCcHHHHH-HHHHHhHHHHhHHHHHHHHHHH
Q 044737 198 LGHWEEAVHDLHVASKIDFDEEIAA-VLKKVEPNALRIEEHRRKYDRL 244 (399)
Q Consensus 198 lg~~eeA~~~l~~Al~ldp~~~~~~-~lk~v~~~~~k~~e~~~~ye~l 244 (399)
..-|+.|+.+|++|.-+.|+-..|. ++..+..+...+..+.+.|+..
T Consensus 639 tqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 639 TQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4455566666666666666654333 2333333333444444444433
No 91
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=8.4e-07 Score=88.90 Aligned_cols=124 Identities=19% Similarity=0.159 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH 195 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~ 195 (399)
....++-.+..++..++++.|...++..|...| |+.++..++..++..++..+|++.+.+++.++|+..-.++++|.+|
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al 384 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL 384 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 455678899999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHH
Q 044737 196 AMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRK 240 (399)
Q Consensus 196 ~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ 240 (399)
...|++.+|+..+...+.-+|++ ..|.+|.+....+++..+....
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 99999999999999999999999 5688999888777766555443
No 92
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.69 E-value=6.9e-08 Score=96.76 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=64.8
Q ss_pred CHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 044737 111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SA---IMYATRASVYIKMKKPNAAIRDATAALEIN 181 (399)
Q Consensus 111 ~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a---~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~ 181 (399)
.+...+.+..+.+.|.+|+..|+|++|+.+|++||+++| +. .+|+|+|.||.++|++++|+.++.+||++.
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 335567788999999999999999999999999999999 76 459999999999999999999999999983
No 93
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.67 E-value=1.7e-06 Score=74.90 Aligned_cols=130 Identities=19% Similarity=0.175 Sum_probs=98.0
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---H
Q 044737 113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S---AIMYATRASVYIKMKKPNAAIRDATAALEINPDS---A 185 (399)
Q Consensus 113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~---a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~ 185 (399)
.....+...+......+..+++..+...+.+.+.-+| + ..++..+|.+++..|+|++|+..++.++...|+. .
T Consensus 6 ~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~ 85 (145)
T PF09976_consen 6 QQAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKP 85 (145)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHH
Confidence 3455677778888888889999999888999999888 5 6777888999999999999999999999987665 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHHHHHH
Q 044737 186 KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYD 242 (399)
Q Consensus 186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~ye 242 (399)
.++++++.++...|+|++|+..+.....-........++..+....++..+++..|+
T Consensus 86 ~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 86 LARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 588899999999999999999987633222222344555555555555555444443
No 94
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.67 E-value=2.9e-07 Score=79.74 Aligned_cols=94 Identities=19% Similarity=0.143 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM 193 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~ 193 (399)
.......|..++..|+|++|+..|.+++...| ...++.++|.+++..++|++|+..++. +.-.+-.+.++..+|.
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd 126 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD 126 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence 45677899999999999999999999999876 467888999999999999999999966 3444555678899999
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 044737 194 AHAMLGHWEEAVHDLHVAS 212 (399)
Q Consensus 194 a~~~lg~~eeA~~~l~~Al 212 (399)
+|...|++++|+..|++|+
T Consensus 127 i~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999885
No 95
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.66 E-value=1.9e-07 Score=93.03 Aligned_cols=83 Identities=19% Similarity=0.238 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~ 196 (399)
+..+..+|.+++..|+|++|+..|.+||.++| ++.+|+++|.+|+.+|+|.+|+.+|+++++++|++..++.+++.|..
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45788999999999999999999999999999 99999999999999999999999999999999999999999998877
Q ss_pred hcCC
Q 044737 197 MLGH 200 (399)
Q Consensus 197 ~lg~ 200 (399)
.+..
T Consensus 116 kl~~ 119 (356)
T PLN03088 116 KIAE 119 (356)
T ss_pred HHHh
Confidence 7643
No 96
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.65 E-value=6.1e-07 Score=75.33 Aligned_cols=95 Identities=25% Similarity=0.102 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPD---SAKGYKTR 191 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~---~~~a~~~~ 191 (399)
..+++.|..+-..|+.++||.+|.+++.... ...++..+|.+|..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 3578899999999999999999999999754 4789999999999999999999999999999888 88888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 044737 192 GMAHAMLGHWEEAVHDLHVASK 213 (399)
Q Consensus 192 g~a~~~lg~~eeA~~~l~~Al~ 213 (399)
+.++..+|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998877764
No 97
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.64 E-value=4.2e-07 Score=80.56 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=87.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhc
Q 044737 125 AMEAISEGKLDEAIELSTEAIMLNP---SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTRGMAHAML 198 (399)
Q Consensus 125 g~~~~~~g~~~~Ai~~y~~Ai~l~P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g~a~~~l 198 (399)
.+.+|-...|..+...+...++.+. .+.+|+++|.++..+++|++|+..|.+|+.+.|+. +.+|+++|.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN 85 (168)
T ss_pred ccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc
Confidence 4556777778888888877667777 58889999999999999999999999999997763 45899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhH
Q 044737 199 GHWEEAVHDLHVASKIDFDEE-IAAVLKKVEP 229 (399)
Q Consensus 199 g~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~ 229 (399)
|++++|+..|++++.++|... ....+..+..
T Consensus 86 g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 86 GEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 999999999999999999873 3334444443
No 98
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.63 E-value=1.4e-06 Score=95.19 Aligned_cols=127 Identities=12% Similarity=0.036 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~ 196 (399)
+...+..+...++.|+|..|+..|.++++.+| +.....-++.++..+|++.+|+..|++++.-.|.+..++..+|.++.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 44678899999999999999999999999999 64333378888888999999999999999434444555555577999
Q ss_pred hcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737 197 MLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRL 244 (399)
Q Consensus 197 ~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l 244 (399)
..|+|++|+..|+++++++|++ .+...+..+.-..++..++...++++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 9999999999999999999998 33333333333444444444444443
No 99
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.61 E-value=4.7e-07 Score=86.86 Aligned_cols=129 Identities=24% Similarity=0.265 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLN--P-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA 194 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~--P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a 194 (399)
...+......+...++++++...+.++.... + +..+|..+|.++.+.|++++|+.++++||+++|++..++..++.+
T Consensus 110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWL 189 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3445556677889999999999999988766 4 889999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 195 HAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 195 ~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
+...|+++++...+....+..|++ ..+..+..+...+++..++...|+++.+
T Consensus 190 li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 999999999888888888887665 4566777777777777777777666554
No 100
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=4.1e-07 Score=86.55 Aligned_cols=105 Identities=13% Similarity=0.086 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHH
Q 044737 115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK---PNAAIRDATAALEINPDSAKGYKT 190 (399)
Q Consensus 115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~---~~~Ai~d~~~Al~l~p~~~~a~~~ 190 (399)
...++.|.-.|.+|+..+++..|+..|.+|+++.| ++.++..+|.+++.... -.++...++++|.+||+++.+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 34467899999999999999999999999999999 99999999999876543 478899999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 191 ~g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
+|..++..|+|.+|+..++..+++.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999998774
No 101
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=1.6e-06 Score=87.01 Aligned_cols=102 Identities=25% Similarity=0.222 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH 195 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~ 195 (399)
.+.-+-..+..++..+++.+|++.+.+++.++| ...++.++|.+|++.|++.+|+..++..+..+|+++..|..++.+|
T Consensus 339 N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay 418 (484)
T COG4783 339 NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAY 418 (484)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHH
Confidence 344455788999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCcH
Q 044737 196 AMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 196 ~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
..+|+-.+|...+..++.+.-.-
T Consensus 419 ~~~g~~~~a~~A~AE~~~~~G~~ 441 (484)
T COG4783 419 AELGNRAEALLARAEGYALAGRL 441 (484)
T ss_pred HHhCchHHHHHHHHHHHHhCCCH
Confidence 99999999999999988887654
No 102
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.60 E-value=3.6e-07 Score=91.72 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=65.7
Q ss_pred hCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737 147 LNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG---YKTRGMAHAMLGHWEEAVHDLHVASKI 214 (399)
Q Consensus 147 l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a---~~~~g~a~~~lg~~eeA~~~l~~Al~l 214 (399)
.+| ++.+|+|+|.+|+++++|++|+..|++||+++|++..+ |+++|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678 99999999999999999999999999999999999865 999999999999999999999999998
No 103
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.59 E-value=1.1e-06 Score=66.75 Aligned_cols=67 Identities=30% Similarity=0.422 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 153 MYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 153 ~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
+|+++|.+++..+++..|+..+.+++++.|.+..+++.+|.++...+++++|+..|.+++.+.|.+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 5789999999999999999999999999999999999999999999999999999999999999874
No 104
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.59 E-value=3.2e-07 Score=95.92 Aligned_cols=100 Identities=19% Similarity=0.245 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHH
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIR--DATAALEINPDSAKGYKTRGMAH 195 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~--d~~~Al~l~p~~~~a~~~~g~a~ 195 (399)
..|+.+|..+...|++.+|...|..|+.++| ...+...+|.++.+.|+..-|.. .+..|++++|.++++|+.+|.++
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF 764 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3444555555555555555555555555555 55555555555555555444444 45555555555555555555555
Q ss_pred HhcCCHHHHHHHHHHHHhhCCcH
Q 044737 196 AMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 196 ~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
..+|+.+.|..+|..|+.+++.+
T Consensus 765 k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 765 KKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHccchHHHHHHHHHHHhhccCC
Confidence 55555555555555555555444
No 105
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.57 E-value=1.9e-06 Score=76.78 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=69.4
Q ss_pred HHHHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737 141 STEAIMLNP---SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTRGMAHAMLGHWEEAVHDLHVASKI 214 (399)
Q Consensus 141 y~~Ai~l~P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l 214 (399)
+...+.+++ .+.+|+++|.+|...+++++|+..|.+++.+.|+. ..+|+.+|.++..+|+|++|+..|.+++.+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 22 ILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344444444 78899999999999999999999999999987764 569999999999999999999999999999
Q ss_pred CCcHH
Q 044737 215 DFDEE 219 (399)
Q Consensus 215 dp~~~ 219 (399)
+|++.
T Consensus 102 ~p~~~ 106 (172)
T PRK02603 102 NPKQP 106 (172)
T ss_pred CcccH
Confidence 99873
No 106
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.57 E-value=9.3e-07 Score=78.32 Aligned_cols=87 Identities=23% Similarity=0.270 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--
Q 044737 134 LDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK----------PNAAIRDATAALEINPDSAKGYKTRGMAHAMLGH-- 200 (399)
Q Consensus 134 ~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~----------~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~-- 200 (399)
|+.|.+.|...+..|| ++..+++=|.+++.+.+ +++|+.-+++||.++|+...+++.+|.||..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999 99999999999887743 4678888999999999999999999999987763
Q ss_pred ---------HHHHHHHHHHHHhhCCcHHH
Q 044737 201 ---------WEEAVHDLHVASKIDFDEEI 220 (399)
Q Consensus 201 ---------~eeA~~~l~~Al~ldp~~~~ 220 (399)
|++|..+|++|+.++|+|+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 78899999999999999964
No 107
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.1e-06 Score=84.49 Aligned_cols=127 Identities=17% Similarity=0.091 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHH-------------------------
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAI------------------------- 171 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai------------------------- 171 (399)
...+..+|+.+...++.++|+-+|..|+.+.| ...+|-.+-.||+..+++.+|.
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVL 413 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceee
Confidence 45677899999999999999999999999999 9999999999999888877644
Q ss_pred -----------HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHHHH
Q 044737 172 -----------RDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRK 240 (399)
Q Consensus 172 -----------~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~ 240 (399)
..++++|+++|.+..|-..++..+..-|++..++..++++|...||......|..+.......++...+
T Consensus 414 ~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred ccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 446667778899999999999999999999999999999999999998888888888888887777776
Q ss_pred HHHH
Q 044737 241 YDRL 244 (399)
Q Consensus 241 ye~l 244 (399)
|...
T Consensus 494 y~~A 497 (564)
T KOG1174|consen 494 YYKA 497 (564)
T ss_pred HHHH
Confidence 6543
No 108
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.55 E-value=3.1e-07 Score=68.47 Aligned_cols=59 Identities=25% Similarity=0.211 Sum_probs=55.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 161 YIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 161 ~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
+++.|+|.+|+..|++++..+|++..+++.++.+|...|++++|...+.+++..+|++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 36789999999999999999999999999999999999999999999999999999974
No 109
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=2.3e-07 Score=93.37 Aligned_cols=108 Identities=22% Similarity=0.187 Sum_probs=99.2
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHH
Q 044737 112 DEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKM---KKPNAAIRDATAALEINPDSAKG 187 (399)
Q Consensus 112 ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l---~~~~~Ai~d~~~Al~l~p~~~~a 187 (399)
-+....++..+..||..|....+..||.+|.+++...| .+.+|.|||.++++. ++.-.|++||..|+++||...+|
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence 45567789999999999999999999999999999999 999999999999885 36678999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 188 YKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 188 ~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
|++++.++..++++.+|+.+...+....|.+.
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 99999999999999999998888888888663
No 110
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.54 E-value=1.7e-06 Score=87.91 Aligned_cols=128 Identities=16% Similarity=0.008 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHH
Q 044737 115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIM--YATRASVYIKMKKPNAAIRDATAALEINPDSA--KGYK 189 (399)
Q Consensus 115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~--~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~--~a~~ 189 (399)
.+....+...+..+...|++++|+..+.++++..| +... ..-+...++..++...++..++++++.+|+++ ..+.
T Consensus 260 ~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~ 339 (409)
T TIGR00540 260 RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR 339 (409)
T ss_pred hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence 34566777889999999999999999999999999 5432 23344444556888999999999999999999 8888
Q ss_pred HHHHHHHhcCCHHHHHHHHH--HHHhhCCcHHHHHHHHHHhHHHHhHHHHHHHHH
Q 044737 190 TRGMAHAMLGHWEEAVHDLH--VASKIDFDEEIAAVLKKVEPNALRIEEHRRKYD 242 (399)
Q Consensus 190 ~~g~a~~~lg~~eeA~~~l~--~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~ye 242 (399)
.+|.+++..|+|++|.+.|+ ++++++|++.+...+..+...+++..+.+.+|+
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999 688899999777788888777777666666554
No 111
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.53 E-value=2.5e-06 Score=88.98 Aligned_cols=125 Identities=18% Similarity=0.106 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHh--CC
Q 044737 117 AAAEAKAKAMEAISEGK---LDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK--------PNAAIRDATAALEI--NP 182 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~---~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~--------~~~Ai~d~~~Al~l--~p 182 (399)
.|-.+..+|..++...+ +..|+.+|++||+++| ++.+|..++.||..... ...+.....+++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 35567788888887655 8899999999999999 99999999998866432 34555566666664 77
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHHHHH
Q 044737 183 DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKY 241 (399)
Q Consensus 183 ~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~y 241 (399)
..+.+|.-+|..+...|++++|...|++|+.++|+...+..+.++....++..++...|
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 78889999999999999999999999999999996555666666666555554444443
No 112
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=7.2e-07 Score=81.01 Aligned_cols=105 Identities=19% Similarity=0.130 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA 194 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a 194 (399)
..|.-++++|+.|=+.|-+.-|.-.|++++.+.| -+.+++-+|..+...++|+.|.+.++.++++||.+--++.+||.+
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 4677889999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCcHHH
Q 044737 195 HAMLGHWEEAVHDLHVASKIDFDEEI 220 (399)
Q Consensus 195 ~~~lg~~eeA~~~l~~Al~ldp~~~~ 220 (399)
++.-|+|.-|..++.+-..-||.++.
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChH
Confidence 99999999999999999999999853
No 113
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.52 E-value=2.4e-06 Score=91.40 Aligned_cols=96 Identities=15% Similarity=0.112 Sum_probs=78.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCC
Q 044737 124 KAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEIN--PDSAKGYKTRGMAHAMLGH 200 (399)
Q Consensus 124 ~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~--p~~~~a~~~~g~a~~~lg~ 200 (399)
.|.++...|++.+|+..|.+..+-.. ....|.|+|.||+.+++|..||+.|+.+++-- -+++..+..+|.+++..+.
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 46666677788888888877776666 67888899999999999999999999988853 3677888889999999999
Q ss_pred HHHHHHHHHHHHhhCCcHH
Q 044737 201 WEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 201 ~eeA~~~l~~Al~ldp~~~ 219 (399)
|.+|...+.+|+.+.|.|.
T Consensus 732 ~~eak~~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 732 LQEAKEALLKARHLAPSNT 750 (1018)
T ss_pred HHHHHHHHHHHHHhCCccc
Confidence 9999999999999888773
No 114
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.52 E-value=2.1e-06 Score=70.32 Aligned_cols=93 Identities=17% Similarity=0.078 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH----HHHHH
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE----EIAAV 223 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~----~~~~~ 223 (399)
...++.+|.+++..++|.+|+..|.+++..+|++ ..+++.+|.++...++++.|+..|+.++..+|++ .+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3578999999999999999999999999999887 6799999999999999999999999999999885 23344
Q ss_pred HHHHhHHHHhHHHHHHHHHH
Q 044737 224 LKKVEPNALRIEEHRRKYDR 243 (399)
Q Consensus 224 lk~v~~~~~k~~e~~~~ye~ 243 (399)
+..+....++..+....|..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQ 101 (119)
T ss_pred HHHHHHHhCChHHHHHHHHH
Confidence 44444444554444444433
No 115
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.51 E-value=1e-05 Score=77.60 Aligned_cols=122 Identities=14% Similarity=0.098 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g 192 (399)
.++...-+.|-...+|++||+..++...+.+ -+.+|+-+|..+....+++.|+..+.+|++.||+++.|-..+|
T Consensus 142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG 221 (389)
T COG2956 142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILG 221 (389)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence 4566777888899999999999999999877 3789999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCcH--HHHHHHHHHhHHHHhHHHHHHH
Q 044737 193 MAHAMLGHWEEAVHDLHVASKIDFDE--EIAAVLKKVEPNALRIEEHRRK 240 (399)
Q Consensus 193 ~a~~~lg~~eeA~~~l~~Al~ldp~~--~~~~~lk~v~~~~~k~~e~~~~ 240 (399)
.++...|+|+.|++.|+.+++.||+. .+...|..+...+++..+....
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999986 5666777777777766655443
No 116
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=2.9e-05 Score=77.26 Aligned_cols=103 Identities=17% Similarity=0.072 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH 195 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~ 195 (399)
.+..+.++||..|..|+|++|.+.|.+||..+. -..+++|+|..+-++++.++|+..|-+.-.+--+++..++.++.+|
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY 568 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 367888999999999999999999999999888 7888888888888888888888888776555556788888888888
Q ss_pred HhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 196 AMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 196 ~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
..+.+...|++.|.++..+-|+++
T Consensus 569 e~led~aqaie~~~q~~slip~dp 592 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSLIPNDP 592 (840)
T ss_pred HHhhCHHHHHHHHHHhcccCCCCH
Confidence 888888888888888888877763
No 117
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.49 E-value=4.3e-06 Score=86.29 Aligned_cols=163 Identities=22% Similarity=0.186 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 044737 115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIML--------NP-SAIMYATRASVYIKMKKPNAAIRDATAALEI----- 180 (399)
Q Consensus 115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l--------~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l----- 180 (399)
..........+..|+.+|+|+.|+..|..|+++ .| -+....++|.+|..+++|.+|+..|.+|+.+
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 344556667999999999999999999999999 67 6777778999999999999999999999987
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc------HHHHHH---HHHHhHHHHhHHHHHHHHHHHHHHH
Q 044737 181 ---NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD------EEIAAV---LKKVEPNALRIEEHRRKYDRLRRER 248 (399)
Q Consensus 181 ---~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~------~~~~~~---lk~v~~~~~k~~e~~~~ye~l~~~~ 248 (399)
+|..+..+.++|.+|...|+|++|..+|+.|++|--. ..+... +..+.....+++++..+|.+..+-.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 4556789999999999999999999999999987532 122222 2233445556666666655443311
Q ss_pred H---------HHHHHH------HHHHHHHHHHHHHHHHHHHhhc
Q 044737 249 E---------ERKVER------ERLRRRAEAQAAYEKAKKEEQS 277 (399)
Q Consensus 249 e---------~kk~~~------er~~~~~~A~~~~~~~~k~~~~ 277 (399)
. ..+-+. ....+..+|++.++++-.+.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1 000000 1344677888888888877765
No 118
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.8e-06 Score=84.97 Aligned_cols=97 Identities=16% Similarity=0.101 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM 197 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~ 197 (399)
..+.+.+..+++.++|.+||..++++|.++| |..+++.||.||+.+++|+.|+.+|.+|++++|+|-.+..-+..+...
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4566899999999999999999999999999 999999999999999999999999999999999998777777776666
Q ss_pred cCCHHHH-HHHHHHHHhhC
Q 044737 198 LGHWEEA-VHDLHVASKID 215 (399)
Q Consensus 198 lg~~eeA-~~~l~~Al~ld 215 (399)
..++.+. .+.|...+..-
T Consensus 338 ~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 6655544 44555555443
No 119
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.46 E-value=4.5e-06 Score=84.48 Aligned_cols=128 Identities=18% Similarity=0.110 Sum_probs=107.2
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737 113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192 (399)
Q Consensus 113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g 192 (399)
...+........+..+...|++++|...+.++++..|+..+...++. +..+++.+++..+++.++.+|+++..++.+|
T Consensus 258 ~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lg 335 (398)
T PRK10747 258 KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLG 335 (398)
T ss_pred HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 33445566778899999999999999999999995555544433333 3459999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHHHHHH
Q 044737 193 MAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYD 242 (399)
Q Consensus 193 ~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~ye 242 (399)
.++...++|++|...|++++++.|++.....+..+....++..+...+|+
T Consensus 336 rl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 336 QLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999877788888887777777666665
No 120
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.45 E-value=2.4e-06 Score=84.28 Aligned_cols=99 Identities=17% Similarity=0.030 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS----AKGYKTRG 192 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----~~a~~~~g 192 (399)
...+...|..+...|+|++|+..|.+++.++| +..++..+|.+|+..|++++|+..+++++.+.|.. ...|+.++
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la 193 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA 193 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence 34556788899999999999999999999999 99999999999999999999999999999998743 24577899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCC
Q 044737 193 MAHAMLGHWEEAVHDLHVASKIDF 216 (399)
Q Consensus 193 ~a~~~lg~~eeA~~~l~~Al~ldp 216 (399)
.++..+|++++|+..|++++...|
T Consensus 194 ~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 194 LFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHCCCHHHHHHHHHHHhcccc
Confidence 999999999999999999987776
No 121
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.44 E-value=6.7e-06 Score=87.49 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~ 196 (399)
...|+..|.+|-..|+.++|+..+..|-.++| +...|..++....++++++.|+-+|++||+++|.+.+.+++++..|.
T Consensus 173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~ 252 (895)
T KOG2076|consen 173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQ 252 (895)
T ss_pred hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 35677899999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCcH
Q 044737 197 MLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 197 ~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
.+|++..|...|.+++.++|..
T Consensus 253 ~~G~~~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 253 KTGDLKRAMETFLQLLQLDPPV 274 (895)
T ss_pred HhChHHHHHHHHHHHHhhCCch
Confidence 9999999999999999999944
No 122
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.44 E-value=3.1e-07 Score=70.54 Aligned_cols=64 Identities=31% Similarity=0.398 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAALEIN-------PDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKI 214 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~-------p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l 214 (399)
+.+|.++|.+|..+++|++|+..|++|+.+. |..+.+|+++|.++..+|++++|+..|++|+++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566677777777777777777777766541 122456677777777777777777777777654
No 123
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.43 E-value=5.1e-06 Score=85.75 Aligned_cols=99 Identities=31% Similarity=0.287 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIML--------NP-SAIMYATRASVYIKMKKPNAAIRDATAALEIN------ 181 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l--------~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~------ 181 (399)
-+..+...|..|...++|.+|+..|.+|+.+ +| .+..+.|+|.+|.+.|+|.+|...|++|+++-
T Consensus 240 va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~ 319 (508)
T KOG1840|consen 240 VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA 319 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc
Confidence 3445557999999999999999999999987 56 89999999999999999999999999999873
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737 182 --PDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215 (399)
Q Consensus 182 --p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld 215 (399)
|.-+..+...+.++...+++++|+..|++++++-
T Consensus 320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 3346688999999999999999999999999875
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.42 E-value=4.8e-06 Score=77.65 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=90.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 044737 122 KAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGH 200 (399)
Q Consensus 122 k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~ 200 (399)
...++.++..|+-+.++....++...+| +..++.-.+...+..|+|..|+..+.++..++|++.++|.-+|.+|..+|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 4567788888888888888888888888 888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCcHH
Q 044737 201 WEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 201 ~eeA~~~l~~Al~ldp~~~ 219 (399)
++.|...|.+++++.|.+.
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p 168 (257)
T COG5010 150 FDEARRAYRQALELAPNEP 168 (257)
T ss_pred hhHHHHHHHHHHHhccCCc
Confidence 9999999999999999884
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=1.5e-05 Score=74.16 Aligned_cols=125 Identities=21% Similarity=0.191 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML 198 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l 198 (399)
-.+-.|..+-..+.|++|++.|+..|+-+| +..+|...-.+...+|+.-+||+....-++.-+.+..||..++.+|...
T Consensus 88 V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 88 VGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE 167 (289)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH
Confidence 345677888888999999999999999999 9999998888888899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCcHHH-HHHHHHHhH---HHHhHHHHHHHHHHH
Q 044737 199 GHWEEAVHDLHVASKIDFDEEI-AAVLKKVEP---NALRIEEHRRKYDRL 244 (399)
Q Consensus 199 g~~eeA~~~l~~Al~ldp~~~~-~~~lk~v~~---~~~k~~e~~~~ye~l 244 (399)
++|+.|+-+|++.+-+.|-+.. ...+.++.- -+..+.-.+.+|.+.
T Consensus 168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999853 445555432 233444445555443
No 126
>PRK11906 transcriptional regulator; Provisional
Probab=98.38 E-value=3.7e-06 Score=84.62 Aligned_cols=97 Identities=16% Similarity=0.035 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044737 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHV 210 (399)
Q Consensus 132 g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~ 210 (399)
.+-.+|+++..+|++++| ++.++..+|.++...+++..|+..+++|+.++|+++.+|+.+|.++...|+.++|+..+++
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 346689999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCcHHHHHHHHHHh
Q 044737 211 ASKIDFDEEIAAVLKKVE 228 (399)
Q Consensus 211 Al~ldp~~~~~~~lk~v~ 228 (399)
|++++|--....++|.+-
T Consensus 398 alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECV 415 (458)
T ss_pred HhccCchhhHHHHHHHHH
Confidence 999999886666666654
No 127
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=98.38 E-value=3.2e-07 Score=61.93 Aligned_cols=40 Identities=40% Similarity=0.673 Sum_probs=37.7
Q ss_pred CHHHHhhcCCHHHHHHHHHHhhChHHHHHhhc-CCcHHHHH
Q 044737 349 DPELMAAFSDPEVMAALQDVMKNPANLAQHQA-NPKVAPII 388 (399)
Q Consensus 349 dpe~~~~~~dp~~~~~~~~~~~np~~~~~~~~-~p~~~~~~ 388 (399)
||+++.+|+||.|+.++++|++||..+.+|++ ||.+++.|
T Consensus 1 dP~~~~~l~~P~~~~~l~~~~~nP~~~~~~~~~nP~~~~~i 41 (41)
T smart00727 1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQENPQLLQLI 41 (41)
T ss_pred CHHHHHHHcCHHHHHHHHHHHHCHHHHHHHHHhCHHhHhhC
Confidence 79999999999999999999999999999999 99998764
No 128
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.38 E-value=2.7e-05 Score=79.10 Aligned_cols=132 Identities=12% Similarity=0.063 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHH
Q 044737 115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA-KGYKTRG 192 (399)
Q Consensus 115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~-~a~~~~g 192 (399)
..++.....+|...+..|+|..|.+.+.++.+..| ....|...|.++...|+++.|...+.++++..|++. .+...++
T Consensus 81 ~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 81 RRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 44677778888889999999999999999988888 777778888888889999999999999988888875 4555568
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 193 MAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 193 ~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
.++...++++.|...++..++..|++ .+...+..+....+++.+....+..+.+
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k 215 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK 215 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888999999999999999999988 4566666766666666666655555553
No 129
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.4e-06 Score=84.34 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=95.9
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C---------------C----CHHHHHHHHHHHHHcCCHHHHHH
Q 044737 113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIML-N---------------P----SAIMYATRASVYIKMKKPNAAIR 172 (399)
Q Consensus 113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l-~---------------P----~a~~~~nra~a~~~l~~~~~Ai~ 172 (399)
.....++..++.++..|+.++|..|+..|.++++. + + ...++.|++.|-++++.|..|+.
T Consensus 217 ~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~ 296 (372)
T KOG0546|consen 217 KALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARF 296 (372)
T ss_pred hhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCccee
Confidence 33455677888999999999999999999999864 1 1 24677889999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 173 DATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 173 d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
.+..+++.++..+++||+++.++..+.++++|++++..+....|++.
T Consensus 297 ~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~ 343 (372)
T KOG0546|consen 297 RTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK 343 (372)
T ss_pred ccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH
Confidence 99999999999999999999999999999999999999999999984
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.34 E-value=1.4e-05 Score=87.17 Aligned_cols=126 Identities=15% Similarity=0.012 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS---------- 184 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---------- 184 (399)
.....+......+...+++++|+..+..++..+| ...+|+..|..|++.++++.+... .++.+-+.+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHH
Confidence 4456777888888899999999999999999999 999999999999988877765554 455544444
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737 185 ---------AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKVEPNALRIEEHRRKYDRL 244 (399)
Q Consensus 185 ---------~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~~~~k~~e~~~~ye~l 244 (399)
-.|++.+|.||..+|++++|...|++++++||+|. +...+.-..... .+.++..+|++.
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 48999999999999999999999999999999983 333333332222 444444444433
No 131
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.34 E-value=1e-05 Score=79.71 Aligned_cols=126 Identities=20% Similarity=0.096 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CH-------------------------------------HHHHHHHHHH
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SA-------------------------------------IMYATRASVY 161 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a-------------------------------------~~~~nra~a~ 161 (399)
....++..++..+++++|+..+.+++..+| +. .++..+|.++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence 344566677777777777777777776666 33 3334667788
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH-----HHHHHHHHhHHHHhHHH
Q 044737 162 IKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE-----IAAVLKKVEPNALRIEE 236 (399)
Q Consensus 162 ~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~-----~~~~lk~v~~~~~k~~e 236 (399)
..+|++.+|+..|+++++++|+++.++..+|.++...|++++|+..|++++.+.|.+. .+..+..+....++..+
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 8899999999999999999999999999999999999999999999999999887431 12245555666677777
Q ss_pred HHHHHHHHH
Q 044737 237 HRRKYDRLR 245 (399)
Q Consensus 237 ~~~~ye~l~ 245 (399)
....|+...
T Consensus 205 A~~~~~~~~ 213 (355)
T cd05804 205 ALAIYDTHI 213 (355)
T ss_pred HHHHHHHHh
Confidence 777776654
No 132
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.34 E-value=7.3e-06 Score=85.95 Aligned_cols=124 Identities=21% Similarity=0.070 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~ 196 (399)
...|...+..+.+.+.-++|.-++.+|-.++| .+..|+.+|.++...+++.+|...|..|+.+||+++....-+|.+|.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 45667778888888888999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHH--HHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHH
Q 044737 197 MLGHWEEAVH--DLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKY 241 (399)
Q Consensus 197 ~lg~~eeA~~--~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~y 241 (399)
..|+-.-|.+ .+..++++||.+ ++|..|..|....+...++.+.|
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 9999888888 999999999998 88999999988888876665554
No 133
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.33 E-value=2.1e-06 Score=65.83 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737 115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLN-------P-SAIMYATRASVYIKMKKPNAAIRDATAALEI 180 (399)
Q Consensus 115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~-------P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l 180 (399)
.+.+..+...|..++..|+|++|+..|.+++.+. | .+.++.++|.||..+|++++|+..+++|+++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567889999999999999999999999999762 2 4889999999999999999999999999986
No 134
>PRK11906 transcriptional regulator; Provisional
Probab=98.32 E-value=1.4e-05 Score=80.50 Aligned_cols=121 Identities=12% Similarity=0.040 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHH---HhCC-CHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC
Q 044737 120 EAKAKAMEAISEGK---LDEAIELSTEAI---MLNP-SAIMYATRASVYIKM---------KKPNAAIRDATAALEINPD 183 (399)
Q Consensus 120 ~~k~~g~~~~~~g~---~~~Ai~~y~~Ai---~l~P-~a~~~~nra~a~~~l---------~~~~~Ai~d~~~Al~l~p~ 183 (399)
.+..+|...+..+. ...|+.+|++|+ .++| .+.+|..+|.||+.. ..-.+|++...+|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 44667777765554 467899999999 9999 999999999999875 1235788999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhHHHHhHHHHHHH
Q 044737 184 SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKVEPNALRIEEHRRK 240 (399)
Q Consensus 184 ~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~~~~k~~e~~~~ 240 (399)
++.++..+|.++...++++.|...|++|+.++|+.. ++..+..+.-..+++.+....
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999999999999984 455555555445555544443
No 135
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.31 E-value=1.1e-05 Score=88.39 Aligned_cols=96 Identities=14% Similarity=0.110 Sum_probs=68.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 044737 122 KAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGH 200 (399)
Q Consensus 122 k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~ 200 (399)
...|..+...|+|++|++.|+++++++| +..++..++.+|...+++.+|+..+.+++.++|++... ..++.++...++
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~ 184 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch
Confidence 3446677777777777777777777777 77777777777777777777777777777777774433 444445545666
Q ss_pred HHHHHHHHHHHHhhCCcH
Q 044737 201 WEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 201 ~eeA~~~l~~Al~ldp~~ 218 (399)
+.+|+..|+++++++|++
T Consensus 185 ~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 185 NYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 666777777777777776
No 136
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.30 E-value=2.9e-05 Score=80.23 Aligned_cols=118 Identities=15% Similarity=0.132 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM 197 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~ 197 (399)
..++.++..+|..++|.+.+......+...| ....+.-.|..+..+|+-++|...+..+++.++.+...|..+|.+++.
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 3567788888999999999999999999999 888888888888899999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHH
Q 044737 198 LGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEE 236 (399)
Q Consensus 198 lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e 236 (399)
-.+|++|+++|+.|++++|+| .+++-|.-++..++.+..
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999998 666666666666555443
No 137
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=2.9e-06 Score=81.32 Aligned_cols=117 Identities=13% Similarity=0.143 Sum_probs=89.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhc
Q 044737 123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINP---DSAKGYKTRGMAHAML 198 (399)
Q Consensus 123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p---~~~~a~~~~g~a~~~l 198 (399)
..|..||-.++.+-|+.+|.+.+..-- +..+|+|+|.|++..++|+-++..+.+|+..-- .-++.||++|.+....
T Consensus 329 cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~i 408 (478)
T KOG1129|consen 329 CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTI 408 (478)
T ss_pred eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEec
Confidence 345567777888888888888888877 888999999999999999999999999888632 3467899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHH
Q 044737 199 GHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRR 239 (399)
Q Consensus 199 g~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~ 239 (399)
|++.-|..+|+-||.-|+++ +....|.-+..+-.+|.+++.
T Consensus 409 GD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 409 GDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred cchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHH
Confidence 99999999999999988887 444445444444444444433
No 138
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.28 E-value=2.9e-06 Score=81.70 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=76.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHH
Q 044737 154 YATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNAL 232 (399)
Q Consensus 154 ~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~ 232 (399)
..-+|.-|+++|+|++||.+|.++|.++|-++..|.+|+.||+++.+|..|..+|..|+.||-.. .+......+...++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35689999999999999999999999999999999999999999999999999999999998655 33333344455667
Q ss_pred hHHHHHHHHHHHHH
Q 044737 233 RIEEHRRKYDRLRR 246 (399)
Q Consensus 233 k~~e~~~~ye~l~~ 246 (399)
.+.++++.|+..-+
T Consensus 180 ~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA 193 (536)
T ss_pred hHHHHHHhHHHHHh
Confidence 77777666665443
No 139
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.28 E-value=1.4e-05 Score=76.33 Aligned_cols=97 Identities=12% Similarity=0.021 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH----HH
Q 044737 150 SAIMYATRASVY-IKMKKPNAAIRDATAALEINPDS---AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE----IA 221 (399)
Q Consensus 150 ~a~~~~nra~a~-~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~----~~ 221 (399)
....++..|.++ ++.++|.+|+..|+..|+..|++ +.+++++|.+|+..|+|++|+..|+++++..|++. +.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 457788888887 56799999999999999999998 57999999999999999999999999999999862 23
Q ss_pred HHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 222 AVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 222 ~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
..+..+...+++....+..|+.+.+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455556666666666665544
No 140
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.27 E-value=6.4e-05 Score=76.10 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHH
Q 044737 114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIM-YATRASVYIKMKKPNAAIRDATAALEINPDSAKG-YKTR 191 (399)
Q Consensus 114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~-~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a-~~~~ 191 (399)
...++......|..++..|+|+.|.+...++-...++..+ |...+.+..+.|+++.|...+.++.+.+|++.-+ ....
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 3446777788899999999999999777776665443333 4444555588999999999999999999888543 3455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 192 GMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 192 g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
+.++...|+++.|+..++++++.+|++ .+...+..+....+++.+....+..+.+
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k 215 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK 215 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 888999999999999999999999988 4566677777677777777666666654
No 141
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=7.6e-06 Score=83.27 Aligned_cols=120 Identities=16% Similarity=0.156 Sum_probs=84.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHH
Q 044737 124 KAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI-------NPDSAKGYKTRGMAH 195 (399)
Q Consensus 124 ~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l-------~p~~~~a~~~~g~a~ 195 (399)
.|..|...+++..|-..|.+|+.++| +...+.-+|.+.+..+.|.+|+.++..++.. .+.|...+.++|.++
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 34444445555555555555555566 6666666777777777777777777777632 123556688999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHH
Q 044737 196 AMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDR 243 (399)
Q Consensus 196 ~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~ 243 (399)
+++++|++|+..|+++|.+.|.+ .+...+.-+...++.+..+.++|-+
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 99999999999999999999988 5566677776677777776666543
No 142
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.24 E-value=1.7e-05 Score=82.72 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHh--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044737 134 LDEAIELSTEAIML--NP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHV 210 (399)
Q Consensus 134 ~~~Ai~~y~~Ai~l--~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~ 210 (399)
+..|.....+++.+ +| .+.+|.-+|..+...+++++|...+++|+.++| +..+|..+|.++...|++++|+..|++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45566666676664 66 788999999999999999999999999999999 578999999999999999999999999
Q ss_pred HHhhCCcHHHHHHHHHH--hHHHHhH
Q 044737 211 ASKIDFDEEIAAVLKKV--EPNALRI 234 (399)
Q Consensus 211 Al~ldp~~~~~~~lk~v--~~~~~k~ 234 (399)
|+.++|.++.+.+...+ +.+++.+
T Consensus 479 A~~L~P~~pt~~~~~~~~f~~~~~~~ 504 (517)
T PRK10153 479 AFNLRPGENTLYWIENLVFQTSVETV 504 (517)
T ss_pred HHhcCCCCchHHHHHhccccccHHHH
Confidence 99999998765554443 3444444
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.23 E-value=1.3e-05 Score=80.55 Aligned_cols=95 Identities=23% Similarity=0.257 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 044737 122 KAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGH 200 (399)
Q Consensus 122 k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~ 200 (399)
...+..++..++..+||+.+.++|..+| ++.++...|..+++.++|+.|+..+.+|+.+.|+..+.|+.++.+|..+|+
T Consensus 204 ~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 204 VLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGD 283 (395)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC
Confidence 3467777778888899999999999999 888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCC
Q 044737 201 WEEAVHDLHVASKIDF 216 (399)
Q Consensus 201 ~eeA~~~l~~Al~ldp 216 (399)
|+.|+..+..+-.+.+
T Consensus 284 ~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 284 FENALLALNSCPMLTY 299 (395)
T ss_pred HHHHHHHHhcCcCCCC
Confidence 9999877775544433
No 144
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.19 E-value=3.1e-05 Score=83.09 Aligned_cols=114 Identities=14% Similarity=0.045 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS-AKGYKTRG 192 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~-~~a~~~~g 192 (399)
+..+...++-+|-.++|..+..++.-||...- -+..|+++|.+|..+|+|+.|..+|.+++..++++ .-+++.+|
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Glg 349 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLG 349 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchh
Confidence 44666889999999999999999999998764 56679999999999999999999999999999998 88999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHH
Q 044737 193 MAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNA 231 (399)
Q Consensus 193 ~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~ 231 (399)
+.|...|+++.|+.+|++.++..|++ .+..+|.-+....
T Consensus 350 Qm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 350 QMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred HHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 99999999999999999999999998 5555666554444
No 145
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=5.3e-05 Score=72.25 Aligned_cols=114 Identities=15% Similarity=0.073 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHH
Q 044737 133 KLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG---HWEEAVHDL 208 (399)
Q Consensus 133 ~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg---~~eeA~~~l 208 (399)
..+..+..++.-|..|| ++.-|.-+|.+|+.++++..|+..|.+|+++.|+++..+.-+|.++.... .-.++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 46677778888899999 99999999999999999999999999999999999999999999988654 457889999
Q ss_pred HHHHhhCCcHH-HHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 209 HVASKIDFDEE-IAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 209 ~~Al~ldp~~~-~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
++++++||+|. ...+|........++.+....++.+-.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 99999999994 445555555555566666655555443
No 146
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.14 E-value=0.00015 Score=62.54 Aligned_cols=98 Identities=23% Similarity=0.215 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C----------------------HHHHHHHHHHHHHcCCHHHHHH
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S----------------------AIMYATRASVYIKMKKPNAAIR 172 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~----------------------a~~~~nra~a~~~l~~~~~Ai~ 172 (399)
.....+...|......++...++..|.+++.+.. . ..++..++.++...+++..|+.
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALR 83 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 4455667778888889999999999999998732 0 3455677788889999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044737 173 DATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASK 213 (399)
Q Consensus 173 d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ 213 (399)
.|.+++.++|.+-.+|..+-.+|...|++.+|+..|+++.+
T Consensus 84 ~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 84 LLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988744
No 147
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.12 E-value=9.2e-05 Score=77.10 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 152 IMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
.+|+.+|.+|-.+|++++|+..+++||+..|+.+..|+.+|.+|...|++.+|...++.|..+|..|
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 3456678888888888888888888888888888888888888888888888888888888888766
No 148
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.11 E-value=0.0004 Score=62.07 Aligned_cols=118 Identities=19% Similarity=0.126 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIML-NP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPD--SAKGYKTRGMA 194 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l-~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~--~~~a~~~~g~a 194 (399)
......|+++...|+|.+|+.+|.+++.- .- +...+..++.+.+.++++..|...+++..+.+|. .+...+..|.+
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 34567899999999999999999999864 33 8899999999999999999999999999999985 46788999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHH
Q 044737 195 HAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEE 236 (399)
Q Consensus 195 ~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e 236 (399)
|..+|++..|...|+.++..-|+-...-..........+..+
T Consensus 170 laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 170 LAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLRE 211 (251)
T ss_pred HHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhH
Confidence 999999999999999999999987654444444333333333
No 149
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.10 E-value=0.00012 Score=70.44 Aligned_cols=118 Identities=19% Similarity=0.097 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHH
Q 044737 115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA-KGYKTRG 192 (399)
Q Consensus 115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~-~a~~~~g 192 (399)
...|.-+=+.+..+....+++.|+..+.+|+..+| .+.+-.-+|.+++..|+|..|++.++.+++.||++. ...-.+-
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 45566777889999999999999999999999999 888889999999999999999999999999999985 5778889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHH
Q 044737 193 MAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNAL 232 (399)
Q Consensus 193 ~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~ 232 (399)
.||..+|+.++.+..+.++.+..+..+...++.++.....
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~ 296 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQE 296 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhh
Confidence 9999999999999999999999988765455554433333
No 150
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.08 E-value=0.00014 Score=75.45 Aligned_cols=121 Identities=19% Similarity=0.160 Sum_probs=96.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044737 126 MEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAV 205 (399)
Q Consensus 126 ~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~ 205 (399)
...+...+|+.|..+|.+|....|...+|..-+....-+++.++|++.|++||+..|++.+.|.-+|+++..+++.+.|.
T Consensus 626 Kle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred HHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHH
Confidence 33445555666666666666555556667777777778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 206 HDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 206 ~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
..|...++..|.. ..|-.|.++++....+-.++--..+.+.
T Consensus 706 ~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 706 EAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 9999999999997 7788888888777666666655554444
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.07 E-value=1.2e-05 Score=62.64 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=61.2
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHH
Q 044737 164 MKKPNAAIRDATAALEINPD--SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRK 240 (399)
Q Consensus 164 l~~~~~Ai~d~~~Al~l~p~--~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ 240 (399)
.++|+.|+..++++++.+|+ +...|+++|.||+.+|+|++|+..+++ +++++.+ ....++.++.-.+++..++...
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57899999999999999995 466788899999999999999999999 8888877 5555566666666665555554
Q ss_pred HH
Q 044737 241 YD 242 (399)
Q Consensus 241 ye 242 (399)
++
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.00013 Score=68.04 Aligned_cols=96 Identities=19% Similarity=0.048 Sum_probs=87.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--
Q 044737 123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG-- 199 (399)
Q Consensus 123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg-- 199 (399)
.+-...-..|+--+||+.+.+-+...+ ++.+|.-++..|+..++|..|.-.+++++-++|-++-.+.++|.+++.+|
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~ 204 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGA 204 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence 344445567777899999999999999 99999999999999999999999999999999999999999999999777
Q ss_pred -CHHHHHHHHHHHHhhCCcH
Q 044737 200 -HWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 200 -~~eeA~~~l~~Al~ldp~~ 218 (399)
+++-|.++|.++++++|.+
T Consensus 205 eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 205 ENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHHHHHHHHHHhChHh
Confidence 5677999999999999955
No 153
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=6.3e-05 Score=74.26 Aligned_cols=107 Identities=17% Similarity=0.138 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHH---H-------------------------------HHHHHHHHHHc
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAI---M-------------------------------YATRASVYIKM 164 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~---~-------------------------------~~nra~a~~~l 164 (399)
-+-..|..+|..|++.+|+..|.++..++| +.. . |+--+...+..
T Consensus 234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~ 313 (564)
T KOG1174|consen 234 LMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDE 313 (564)
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhh
Confidence 344789999999999999999999999998 421 1 11122334456
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHH
Q 044737 165 KKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKK 226 (399)
Q Consensus 165 ~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~ 226 (399)
++|+.|+....++|.++|.+..+|..+|.+++.+++.++|+-.|+.|..+.|.. .+.+-|-.
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~h 376 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFH 376 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999876 54444433
No 154
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.98 E-value=0.00026 Score=76.40 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK-PNAAIRDATAALEINPDSAKGYKTRGMAHAM 197 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~-~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~ 197 (399)
.....|...+..++|++||+...++++.+| +..++..+|.++..++. .++|..+|-.|.+++|++.-||.-++..|..
T Consensus 4 ~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~ 83 (1238)
T KOG1127|consen 4 TALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER 83 (1238)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc
Confidence 445677888999999999999999999999 99999999999999998 9999999999999999999999999999987
Q ss_pred ---cCCHHHHHHHHHHHHhhCCcHH
Q 044737 198 ---LGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 198 ---lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
.-+++++...|.+++-+.++..
T Consensus 84 ~~dIl~ld~~~~~yq~~~l~le~q~ 108 (1238)
T KOG1127|consen 84 YNDILDLDRAAKCYQRAVLILENQS 108 (1238)
T ss_pred cchhhhhhHhHHHHHHHHHhhhhhh
Confidence 4468899999999988887654
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.98 E-value=7.9e-05 Score=71.87 Aligned_cols=103 Identities=24% Similarity=0.168 Sum_probs=82.9
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C
Q 044737 113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLN-----P--SAIMYATRASVYIKMKKPNAAIRDATAALEINP--D 183 (399)
Q Consensus 113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~-----P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p--~ 183 (399)
...+.+..+...|+.|-..++|.+|..+|.+|..+. + .+..|.+.+.+|.+. ++..|+..+++|+.+.- .
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC
Confidence 444556778888888889999999999999998763 2 577888888888766 99999999999999732 1
Q ss_pred ----CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCC
Q 044737 184 ----SAKGYKTRGMAHAML-GHWEEAVHDLHVASKIDF 216 (399)
Q Consensus 184 ----~~~a~~~~g~a~~~l-g~~eeA~~~l~~Al~ldp 216 (399)
-++++.++|.+|... ++++.|+..|++|+.+--
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYE 146 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 257899999999998 999999999999998854
No 156
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.97 E-value=9e-06 Score=52.49 Aligned_cols=32 Identities=31% Similarity=0.504 Sum_probs=26.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044737 174 ATAALEINPDSAKGYKTRGMAHAMLGHWEEAV 205 (399)
Q Consensus 174 ~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~ 205 (399)
|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888888888888888888888888888875
No 157
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.97 E-value=3.4e-05 Score=80.74 Aligned_cols=124 Identities=19% Similarity=0.152 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHH-----------------------H-----HHHcCCHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRAS-----------------------V-----YIKMKKPNA 169 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~-----------------------a-----~~~l~~~~~ 169 (399)
...|-.....|...|+..+|-....+-|+.+|++.+|+-||. . .+..++|.+
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~ 503 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSE 503 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHH
Confidence 344556667777778777777766666663335555543332 2 233578999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHH
Q 044737 170 AIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKY 241 (399)
Q Consensus 170 Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~y 241 (399)
+.++++..++++|-....||++|.|...++++..|+.+|..++.++|++ ..+..+...+-++++..+.....
T Consensus 504 ~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l 576 (777)
T KOG1128|consen 504 ADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKL 576 (777)
T ss_pred HHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 66777777665555544444433
No 158
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.96 E-value=1.8e-05 Score=50.67 Aligned_cols=32 Identities=34% Similarity=0.420 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737 186 KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD 217 (399)
Q Consensus 186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~ 217 (399)
++|+++|.+|..+++|++|+.+|++|++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34444455555555555555555555544443
No 159
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.96 E-value=4e-05 Score=82.44 Aligned_cols=101 Identities=16% Similarity=0.091 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~ 196 (399)
...|..+|..+.+.+++..||..|+.|++.+| +..+|..+|.+|...|+|..|++.+++|..++|.+.-+-|..+....
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC 641 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence 35667799999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCcH
Q 044737 197 MLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 197 ~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
.+|+|.+|+..+...+......
T Consensus 642 d~GkYkeald~l~~ii~~~s~e 663 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLIIYAFSLE 663 (1238)
T ss_pred HhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888765443
No 160
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.96 E-value=0.001 Score=62.35 Aligned_cols=102 Identities=16% Similarity=0.134 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA---KGYKT 190 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~---~a~~~ 190 (399)
+..|.+.|...++.|+|.+|+..|.......| .-.+...++.++++.++|..|+..+++-+.+.|.++ -++|.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 56899999999999999999999999999988 578889999999999999999999999999999875 47888
Q ss_pred HHHHHHhcC--------CHHHHHHHHHHHHhhCCcHH
Q 044737 191 RGMAHAMLG--------HWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 191 ~g~a~~~lg--------~~eeA~~~l~~Al~ldp~~~ 219 (399)
+|.+++..= --.+|+..++..+..-|+..
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 888876542 23568888999999999863
No 161
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.95 E-value=1.5e-05 Score=51.04 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDS 184 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~ 184 (399)
+.+|+++|.+|+.+++|++|+..|++||+++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999874
No 162
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.95 E-value=0.0005 Score=71.35 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML 198 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l 198 (399)
-|...|..+-..++|++||.+|+.|+.+.| |..+|.-++....++++|......-.+.+++.|.....|.-.+.++..+
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL 156 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 567788888889999999999999999999 9999999999999999999988888899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhC
Q 044737 199 GHWEEAVHDLHVASKID 215 (399)
Q Consensus 199 g~~eeA~~~l~~Al~ld 215 (399)
|+|..|...++...+..
T Consensus 157 g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999988877666554
No 163
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.89 E-value=0.00016 Score=60.69 Aligned_cols=67 Identities=18% Similarity=0.044 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 152 IMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
.+++++|.+|-.+|++++|+..|.+++....+. ..++..+|.+|..+|++++|+..+++++...|++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 468899999999999999999999999976544 5799999999999999999999999999998884
No 164
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00051 Score=66.32 Aligned_cols=69 Identities=26% Similarity=0.321 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS----AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
.+.-|..-|+-|++-++|..|+..|+++|+.+..+ +..|.+|+.|++.+|+|..|+.++.+|++++|++
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h 152 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH 152 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 45566678999999999999999999999987655 5689999999999999999999999999999998
No 165
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.87 E-value=3.3e-05 Score=52.72 Aligned_cols=42 Identities=21% Similarity=0.418 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737 152 IMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM 193 (399)
Q Consensus 152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~ 193 (399)
.+|..+|.+|..+|++++|++.|+++|+++|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788888888889988998888899888888888888775
No 166
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.83 E-value=0.00085 Score=61.49 Aligned_cols=101 Identities=17% Similarity=0.093 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCC
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKK-----------PNAAIRDATAALEINPD 183 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~-----------~~~Ai~d~~~Al~l~p~ 183 (399)
..+...|..+++.++|..|+..|.+.|+..| ...+++.+|.|++++.. ...|+..|+..|...|+
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~ 122 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN 122 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence 4567889999999999999999999999999 35788899999877532 35899999999999999
Q ss_pred CHH-----------------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 184 SAK-----------------GYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 184 ~~~-----------------a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
+.. --+..|..|...+.|..|+.-|+.+++.-|+..
T Consensus 123 S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~ 175 (203)
T PF13525_consen 123 SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP 175 (203)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence 832 234467789999999999999999999999874
No 167
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.83 E-value=0.00011 Score=71.14 Aligned_cols=100 Identities=18% Similarity=0.068 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMK--KPNAAIRDATAALEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~--~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~ 196 (399)
.....-..+++.++++.|...+....+.+. .......-|.+.+..| ++..|...|+......+.++..+..++.|+.
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 334456678899999999999998887777 5444444455555555 5899999999988877888999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCcHH
Q 044737 197 MLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 197 ~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
.+|+|++|...+.+|+..+|.+.
T Consensus 213 ~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC-CCHH
T ss_pred HhCCHHHHHHHHHHHHHhccCCH
Confidence 99999999999999999999884
No 168
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.82 E-value=0.00055 Score=56.68 Aligned_cols=95 Identities=22% Similarity=0.310 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLN---P----------SAIMYATRASVYIKMKKPNAAIRDATAALE------- 179 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~---P----------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~------- 179 (399)
.....|...+..+-|++|...|.+|+... | ++.+|..++.++..||+|++++...+++|.
T Consensus 11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGE 90 (144)
T PF12968_consen 11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGE 90 (144)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc
Confidence 34466777888999999999999999862 2 478999999999999999999988888876
Q ss_pred hCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737 180 INPD----SAKGYKTRGMAHAMLGHWEEAVHDLHVASKI 214 (399)
Q Consensus 180 l~p~----~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l 214 (399)
|+.+ |+.+.++|+.++..+|+.++|+..|+.+.+.
T Consensus 91 L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 91 LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4555 4567788999999999999999999988653
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.00027 Score=68.19 Aligned_cols=102 Identities=22% Similarity=0.171 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 044737 116 EAAAEAKAKAMEAISE-GKLDEAIELSTEAIMLNP-------SAIMYATRASVYIKMKKPNAAIRDATAALEINPD---- 183 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~-g~~~~Ai~~y~~Ai~l~P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~---- 183 (399)
..+..+...|..+... +++++|+++|.+|+.+.- ...++.+.|.++.++++|.+|+..|++++...-+
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 4467788888888888 999999999999999832 4678889999999999999999999999875321
Q ss_pred --CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737 184 --SA-KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD 217 (399)
Q Consensus 184 --~~-~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~ 217 (399)
++ ..++..+.|++..|++..|...|++...++|.
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 23 35667888999999999999999999999984
No 170
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.79 E-value=0.0005 Score=69.27 Aligned_cols=106 Identities=24% Similarity=0.169 Sum_probs=92.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044737 130 SEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLH 209 (399)
Q Consensus 130 ~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~ 209 (399)
..++|+.|+..|.+....+|. ..+.+|.+|+..++..+|++.+.++|..+|.+...+...+..+...++++.|+...+
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk 258 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAK 258 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 457899999999999999883 233478888889999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCcH-HHHHHHHHHhHHHHhHHHH
Q 044737 210 VASKIDFDE-EIAAVLKKVEPNALRIEEH 237 (399)
Q Consensus 210 ~Al~ldp~~-~~~~~lk~v~~~~~k~~e~ 237 (399)
+|+.+.|++ ..|..|.++.-.+++++.+
T Consensus 259 ~av~lsP~~f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 259 KAVELSPSEFETWYQLAECYIQLGDFENA 287 (395)
T ss_pred HHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence 999999998 6788888877666665544
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.79 E-value=0.0014 Score=61.83 Aligned_cols=101 Identities=16% Similarity=0.079 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcC---------------C---HHHHHHHHHH
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMK---------------K---PNAAIRDATA 176 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~---------------~---~~~Ai~d~~~ 176 (399)
......|..+++.++|.+|+..|++.|+++| ...+++.+|.|+..++ + -..|+..+++
T Consensus 70 ~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~ 149 (243)
T PRK10866 70 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK 149 (243)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH
Confidence 3477899999999999999999999999999 4678899999976654 1 2478899999
Q ss_pred HHHhCCCCHH---H--------------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 177 ALEINPDSAK---G--------------YKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 177 Al~l~p~~~~---a--------------~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
.|+..|++.- + -+..|.-|.+.|.|..|+.-++.+++--|+..
T Consensus 150 li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~ 209 (243)
T PRK10866 150 LVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQ 209 (243)
T ss_pred HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCc
Confidence 9999998831 2 23456668899999999999999999998863
No 172
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.77 E-value=0.00013 Score=79.75 Aligned_cols=98 Identities=15% Similarity=0.090 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHcCCHHHHH-----------------HHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737 119 AEAKAKAMEAISEGKLDEAI-----------------ELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI 180 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai-----------------~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l 180 (399)
..+.-.|..+++.+++..|. .+|...|...+ +-.+++.+|.||-++|++.+|+..++++|++
T Consensus 66 ~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~ 145 (906)
T PRK14720 66 SALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA 145 (906)
T ss_pred ehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 34555555566655555544 44444444444 4589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737 181 NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD 217 (399)
Q Consensus 181 ~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~ 217 (399)
+|+++.++.++|..|... ++++|+..+.+|+....+
T Consensus 146 D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 146 DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 999999999999887543
No 173
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.77 E-value=0.00036 Score=65.90 Aligned_cols=95 Identities=15% Similarity=0.017 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHH---HH
Q 044737 152 IMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAA---VL 224 (399)
Q Consensus 152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~---~l 224 (399)
.-+++.|..+++.|+|..|...|..-|+..|++ +.|+||+|.+++.+|+|+.|...|..+++-.|+. .+.+ .|
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 337899999999999999999999999999987 5799999999999999999999999999999986 2223 34
Q ss_pred HHHhHHHHhHHHHHHHHHHHHH
Q 044737 225 KKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 225 k~v~~~~~k~~e~~~~ye~l~~ 246 (399)
..+...+++..+++..|+.+.+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 4445667777777777666655
No 174
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.00028 Score=68.00 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=90.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 044737 123 AKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWE 202 (399)
Q Consensus 123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~e 202 (399)
+.|..|++.|-+.+|-..+..++...|....|..++.+|.++.++..|+..+...+..-|.++-.++-.+++|..+++++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence 67999999999999999999999999967778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCcH
Q 044737 203 EAVHDLHVASKIDFDE 218 (399)
Q Consensus 203 eA~~~l~~Al~ldp~~ 218 (399)
+|++.|+.+++++|.|
T Consensus 308 ~a~~lYk~vlk~~~~n 323 (478)
T KOG1129|consen 308 DALQLYKLVLKLHPIN 323 (478)
T ss_pred HHHHHHHHHHhcCCcc
Confidence 9999999999999987
No 175
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.74 E-value=0.00088 Score=56.60 Aligned_cols=62 Identities=27% Similarity=0.331 Sum_probs=57.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 157 RASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 157 ra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
.|.+....++.+.|++.|.++|.+-|..+.+|.+|+.+++..|+.++|+.++.+|+++.-+-
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 56666788999999999999999999999999999999999999999999999999998654
No 176
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.69 E-value=7.9e-05 Score=47.33 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 044737 153 MYATRASVYIKMKKPNAAIRDATAALEINPD 183 (399)
Q Consensus 153 ~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~ 183 (399)
+|+.+|.+|+.+++|.+|+.+|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4445555555555555555555555555544
No 177
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.68 E-value=0.0001 Score=46.80 Aligned_cols=34 Identities=29% Similarity=0.391 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 185 AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 185 ~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
+++|+.+|.++..+|+|++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678888888888888888888888888888864
No 178
>PRK10941 hypothetical protein; Provisional
Probab=97.68 E-value=0.00043 Score=66.19 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHH
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKV 227 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v 227 (399)
.....|+=.+|++.++|+.|++.++..+.++|+++.-+.-||.+|..++.+..|+.+|+..++..|++.....++..
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999877766654
No 179
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.67 E-value=4.5e-05 Score=49.17 Aligned_cols=32 Identities=34% Similarity=0.444 Sum_probs=30.4
Q ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHH
Q 044737 140 LSTEAIMLNP-SAIMYATRASVYIKMKKPNAAI 171 (399)
Q Consensus 140 ~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai 171 (399)
+|++||+++| ++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4899999999 9999999999999999999986
No 180
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.65 E-value=0.00031 Score=69.60 Aligned_cols=95 Identities=18% Similarity=0.258 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP--------------S-----AIMYATRASVYIKMKKPNAAIRDATAAL 178 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P--------------~-----a~~~~nra~a~~~l~~~~~Ai~d~~~Al 178 (399)
.+.....|..+|++++|..|+..|..||+++. + ..+-..+..||++++++..|+....+.|
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 34455678889999999999999999998742 0 2344678999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044737 179 EINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVAS 212 (399)
Q Consensus 179 ~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al 212 (399)
-+||.+..-++|.|.+++.|.+|.+|...+--|.
T Consensus 256 ~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 256 NLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988776654
No 181
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00016 Score=66.85 Aligned_cols=75 Identities=25% Similarity=0.297 Sum_probs=64.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHh
Q 044737 154 YATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVE 228 (399)
Q Consensus 154 ~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~ 228 (399)
+.--+..|+.-.+|..||..|.+||.++|..+..|.+++.+|+.+.+|+.+..++++|+.++|+. .....|+.+.
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 34456677788899999999999999999999999999999999999999999999999999987 3344555543
No 182
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.56 E-value=0.0012 Score=64.09 Aligned_cols=96 Identities=17% Similarity=0.102 Sum_probs=79.8
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 044737 124 KAMEAISEG--KLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGH 200 (399)
Q Consensus 124 ~g~~~~~~g--~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~ 200 (399)
.+...+..| +|.+|.-.|.+.....+ +..++..+|.|++.+|+|++|...+.+|+..+|.++.++.++..+...+|+
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 333444444 69999999999777777 999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHHHHhhCCcHH
Q 044737 201 W-EEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 201 ~-eeA~~~l~~Al~ldp~~~ 219 (399)
. +.+.+.+.+....+|+..
T Consensus 251 ~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 251 PTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp TCHHHHHHHHHCHHHTTTSH
T ss_pred ChhHHHHHHHHHHHhCCCCh
Confidence 9 556667788888899876
No 183
>PRK15331 chaperone protein SicA; Provisional
Probab=97.56 E-value=0.00098 Score=58.64 Aligned_cols=97 Identities=6% Similarity=-0.096 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHH-HHHHHHHh
Q 044737 150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEI-AAVLKKVE 228 (399)
Q Consensus 150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~-~~~lk~v~ 228 (399)
.....+..|.-++..|++.+|...|.-.+-++|-+++.|+-+|.++..+++|++|+..|..|..++++|.. .-....+.
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~ 115 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence 56677888889999999999999999999999999999999999999999999999999999999988743 34555566
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 044737 229 PNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 229 ~~~~k~~e~~~~ye~l~~ 246 (399)
-.+++...++..+.....
T Consensus 116 l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 116 LLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 666676777666655444
No 184
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.0012 Score=64.33 Aligned_cols=95 Identities=18% Similarity=0.081 Sum_probs=75.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------HHhCC------
Q 044737 124 KAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAA--------------LEINP------ 182 (399)
Q Consensus 124 ~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~A--------------l~l~p------ 182 (399)
.|-.+|..|+|++|+..|+-+...+. .+.++.|+|.|++-+|.|.+|.....+| .+++.
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 46789999999999999999888766 9999999999999999999988776554 22221
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 183 ------DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 183 ------~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
|...--+.++.+++..-.|.+|+..|.+.+.-+|+.
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 122334557777888888999999999988887775
No 185
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.54 E-value=0.0036 Score=65.33 Aligned_cols=99 Identities=18% Similarity=0.085 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH 195 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~ 195 (399)
....+.-.+.-+-..|+|++|+...++||...| ...+|..+|.+|-..|++.+|....+.|-.+|..+.-.-...+..+
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 356778889999999999999999999999999 9999999999999999999999999999999999888888888899
Q ss_pred HhcCCHHHHHHHHHHHHhhC
Q 044737 196 AMLGHWEEAVHDLHVASKID 215 (399)
Q Consensus 196 ~~lg~~eeA~~~l~~Al~ld 215 (399)
.+.|+.++|...+..-.+-+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCC
Confidence 99999999999988776655
No 186
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=6.9e-05 Score=73.97 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 044737 252 KVERERLRRRAEAQAAYEKAKKEEQSSSSER 282 (399)
Q Consensus 252 k~~~er~~~~~~A~~~~~~~~k~~~~d~g~~ 282 (399)
++++++|+.+.+|+++|++++||+.||.-..
T Consensus 41 ~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~ 71 (371)
T COG0484 41 KEAEEKFKEINEAYEVLSDPEKRAAYDQFGH 71 (371)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHhhccCc
Confidence 4566799999999999999999999995543
No 187
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0034 Score=64.79 Aligned_cols=124 Identities=14% Similarity=0.161 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM 197 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~ 197 (399)
..+...-+.+.+.++|++|+....+.|.+.| ...++...-.|++++.+|+.|+.+..+-..+.-.+. ..+.++.|+++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHH
Confidence 4566666777888888888888888888888 777777777777788888877754333222111111 12566777777
Q ss_pred cCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 198 LGHWEEAVHDLHVASKIDFDEE-IAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 198 lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
+++.++|+.++. -+++.+. +..+...+.-++.++.++.+-|+.|.+
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 888888877777 3333332 344444555566666666666666643
No 188
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.47 E-value=0.00045 Score=73.23 Aligned_cols=108 Identities=25% Similarity=0.273 Sum_probs=99.1
Q ss_pred CHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCC
Q 044737 111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-----SAIMYATRASVYIKM--KKPNAAIRDATAALEINPD 183 (399)
Q Consensus 111 ~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-----~a~~~~nra~a~~~l--~~~~~Ai~d~~~Al~l~p~ 183 (399)
.+..+..+..++..+|.+|..++|..|.-.|..++.+-| .+.++.|++.||+.+ ++|..++..|+-|+...|.
T Consensus 46 i~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~ 125 (748)
T KOG4151|consen 46 IEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPR 125 (748)
T ss_pred hHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccch
Confidence 445567888999999999999999999999999999877 578889999998765 5899999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 184 SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 184 ~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
..++++.|+.+|..+++++-|++++.-....+|.+
T Consensus 126 i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 126 ISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999998
No 189
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.46 E-value=0.001 Score=65.89 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737 152 IMYATRASVYIKMKKPNAAIRDATAALEINPDS------AKGYKTRGMAHAMLGHWEEAVHDLHVASKI 214 (399)
Q Consensus 152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~------~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l 214 (399)
.+|-|+|..|+-+|+|..||..-..-|++-..+ ..||.++|.+|..+|+++.|++.|++.+.+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 445555555555555555555554444443222 235555555555556665555555555443
No 190
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.44 E-value=0.0003 Score=70.86 Aligned_cols=94 Identities=20% Similarity=0.182 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHH-HHhH
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLK-KVEP 229 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk-~v~~ 229 (399)
+..+.+-+..+++-+.|+.|+..|.+||+++|+++..|-+|+.+|...++|..|+.|+.+|++++|........+ .+.-
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 345667788889999999999999999999999999999999999999999999999999999999864322222 3334
Q ss_pred HHHhHHHHHHHHHHH
Q 044737 230 NALRIEEHRRKYDRL 244 (399)
Q Consensus 230 ~~~k~~e~~~~ye~l 244 (399)
++.+..++...++..
T Consensus 84 ~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKV 98 (476)
T ss_pred hHHHHHHHHHHHHHh
Confidence 444444444444333
No 191
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.43 E-value=0.005 Score=62.16 Aligned_cols=127 Identities=20% Similarity=0.107 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~ 196 (399)
...|..-|.--..++++..|...|.+||..+- ++.+|...+.+-++.+..+.|....++|+.+-|.--+.|+..-..--
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34455666666678889999999999999999 99999999999999999999999999999999999999999998999
Q ss_pred hcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737 197 MLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRL 244 (399)
Q Consensus 197 ~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~ye~l 244 (399)
.+|+...|.+.|++=+...|+..++...-..+-+.+.+..++.-|++.
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERF 200 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999877766666666667766666666543
No 192
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.39 E-value=0.0052 Score=60.70 Aligned_cols=125 Identities=21% Similarity=0.133 Sum_probs=100.7
Q ss_pred cCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 044737 110 VTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYK 189 (399)
Q Consensus 110 ~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~ 189 (399)
.+.+......-....+..+...|++++|.+...++++..-+..++. =.-.++.+++..=++..++.++..|+++..++
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~--~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~ 332 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR--LIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLS 332 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH--HHhhcCCCCchHHHHHHHHHHHhCCCChhHHH
Confidence 3444444455566677888999999999999999998866333222 22345778999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHH
Q 044737 190 TRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEE 236 (399)
Q Consensus 190 ~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e 236 (399)
.+|..+++.+.|.+|...|+.|++..|+.....++..+...+.+.+.
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 99999999999999999999999999998877788877666665433
No 193
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.33 E-value=0.0042 Score=64.83 Aligned_cols=99 Identities=15% Similarity=0.019 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 044737 121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG 199 (399)
Q Consensus 121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg 199 (399)
|..-++..--.++.++|+++++++|+..| .+.+|.-+|+++-++++.+.|...|...++..|..+..|..++.+--..|
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 34445555566788889999999999999 88999999999999999999999999999999999989988888888888
Q ss_pred CHHHHHHHHHHHHhhCCcHH
Q 044737 200 HWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 200 ~~eeA~~~l~~Al~ldp~~~ 219 (399)
..-.|...|.++.-.+|.+.
T Consensus 734 ~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 734 QLVRARSILDRARLKNPKNA 753 (913)
T ss_pred chhhHHHHHHHHHhcCCCcc
Confidence 88889999999988888874
No 194
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0025 Score=62.19 Aligned_cols=86 Identities=17% Similarity=0.090 Sum_probs=76.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 044737 126 MEAISEGKLDEAIELSTEAIMLNP--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEE 203 (399)
Q Consensus 126 ~~~~~~g~~~~Ai~~y~~Ai~l~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~ee 203 (399)
..++...+|.-||.+++-.+.++. ...+-.++|.||+.+|+|++|+..|+-+..-+....+.+.+++.+++.+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 347788999999999998887776 567888999999999999999999999998877788999999999999999999
Q ss_pred HHHHHHHH
Q 044737 204 AVHDLHVA 211 (399)
Q Consensus 204 A~~~l~~A 211 (399)
|.....+|
T Consensus 110 A~~~~~ka 117 (557)
T KOG3785|consen 110 AKSIAEKA 117 (557)
T ss_pred HHHHHhhC
Confidence 98765554
No 195
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.30 E-value=0.00045 Score=47.02 Aligned_cols=34 Identities=26% Similarity=0.203 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 186 KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
.+|+.+|.+|..+|++++|+..|+++++++|++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 5789999999999999999999999999999994
No 196
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.27 E-value=0.018 Score=49.85 Aligned_cols=98 Identities=28% Similarity=0.323 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHH
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRAS-VYIKMKKPNAAIRDATAALEINP---DSAKGYKTRGMA 194 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~-a~~~l~~~~~Ai~d~~~Al~l~p---~~~~a~~~~g~a 194 (399)
.+...+..+...++|..|+..+..++...+ ....+..... ++...+++..|+..+.+++.++| .....++.++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL 176 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH
Confidence 344444455555555555555555555544 3233333333 45555555555555555555444 234444444444
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCc
Q 044737 195 HAMLGHWEEAVHDLHVASKIDFD 217 (399)
Q Consensus 195 ~~~lg~~eeA~~~l~~Al~ldp~ 217 (399)
+...++++.|+..+.+++...+.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcc
Confidence 55555555555555555555554
No 197
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.26 E-value=0.0064 Score=58.63 Aligned_cols=123 Identities=15% Similarity=-0.034 Sum_probs=90.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737 121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIK-MKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML 198 (399)
Q Consensus 121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~-l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l 198 (399)
|....+...+.+..+.|...|.+|++..+ ...+|...|...+. .++...|...|+.+++.-|.+...|.....-+..+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 34444555566668999999999986666 78889988988777 45666699999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCcHH----HHHHHHHHhHHHHhHHHHHHHHHH
Q 044737 199 GHWEEAVHDLHVASKIDFDEE----IAAVLKKVEPNALRIEEHRRKYDR 243 (399)
Q Consensus 199 g~~eeA~~~l~~Al~ldp~~~----~~~~lk~v~~~~~k~~e~~~~ye~ 243 (399)
++.+.|...|++++..-+.+. ++...-+.+...+.+......+++
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999887765 444444444555544444443333
No 198
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.0088 Score=61.78 Aligned_cols=90 Identities=22% Similarity=0.202 Sum_probs=75.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------
Q 044737 122 KAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEIN------------------- 181 (399)
Q Consensus 122 k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~------------------- 181 (399)
++++.++|+.++.++|+.+++ -+++ +..+..-+|.+++++++|++|+..|+..++-+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 588999999999999999998 4566 66788889999999999999999998875432
Q ss_pred -----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737 182 -----------PD-SAKGYKTRGMAHAMLGHWEEAVHDLHVASKI 214 (399)
Q Consensus 182 -----------p~-~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l 214 (399)
|+ +-..+|+.+.++...|+|.+|++.+++|+++
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI 204 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22 3467899999999999999999999999544
No 199
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.21 E-value=0.0013 Score=67.72 Aligned_cols=96 Identities=20% Similarity=0.129 Sum_probs=87.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 044737 124 KAMEAISEGKLDEAIELSTEAIMLNP--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHW 201 (399)
Q Consensus 124 ~g~~~~~~g~~~~Ai~~y~~Ai~l~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~ 201 (399)
.|...--.|+...|+.++..|+...| ......++|.+.++-+-...|-..+.++|.++..-+-.++.+|.++..+.+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 34444457899999999999999999 7788899999999999999999999999999988888999999999999999
Q ss_pred HHHHHHHHHHHhhCCcHH
Q 044737 202 EEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 202 eeA~~~l~~Al~ldp~~~ 219 (399)
+.|++.|+.|++++|++.
T Consensus 693 ~~a~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCP 710 (886)
T ss_pred HHHHHHHHHHHhcCCCCh
Confidence 999999999999999984
No 200
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.21 E-value=0.014 Score=65.99 Aligned_cols=91 Identities=16% Similarity=0.141 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Q 044737 123 AKAMEAISEGKLDEAIELSTEAIML----NPSAIMYATRASVYIKMKKPNAAIRDATAALEIN-PDSAKGYKTRGMAHAM 197 (399)
Q Consensus 123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l----~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~-p~~~~a~~~~g~a~~~ 197 (399)
.....+.+.|++++|.+.|.+.... .|+...|..+-.+|.+.|++++|++.|+...+.+ +.+...|..+..+|.+
T Consensus 547 sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 3344444455555555555544431 2244444445555555555555555555554443 2334445555555555
Q ss_pred cCCHHHHHHHHHHHHh
Q 044737 198 LGHWEEAVHDLHVASK 213 (399)
Q Consensus 198 lg~~eeA~~~l~~Al~ 213 (399)
.|++++|+..|....+
T Consensus 627 ~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 627 KGDWDFALSIYDDMKK 642 (1060)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555444
No 201
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.19 E-value=0.0006 Score=43.28 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 044737 186 KGYKTRGMAHAMLGHWEEAVHDLHVASKIDF 216 (399)
Q Consensus 186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp 216 (399)
++|+.+|.+|..+|++++|+..|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455555555555555555555555555555
No 202
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.18 E-value=0.031 Score=55.31 Aligned_cols=132 Identities=14% Similarity=0.077 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Q 044737 115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINP-DSAKGYKTRG 192 (399)
Q Consensus 115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p-~~~~a~~~~g 192 (399)
..++......|..-+..|+|.+|.++..++-+-.+ ...+|..-+.+--+.|++..|=.+..+|-++-+ +....+..++
T Consensus 81 rrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltra 160 (400)
T COG3071 81 RRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRA 160 (400)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 45677778889999999999999999999888888 788888888888999999999999999999943 4556788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 193 MAHAMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 193 ~a~~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
..+...+++..|...+.++++..|.+. ...+..++.-..+.+.+.......+.+
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k 215 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRK 215 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999999999984 344444444444444444444444444
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.18 E-value=0.0017 Score=64.49 Aligned_cols=95 Identities=19% Similarity=0.117 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHH
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLN----P---SAIMYATRASVYIKMKKPNAAIRDATAALEIN------PDSAK 186 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~----P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~------p~~~~ 186 (399)
++.+.||.+.-.|+|+.|+++|..++.+. . .+...+.+|.+|.-+++|+.||.+..+-|.+- -....
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 44577888888899999999988776652 2 56777788999999999999999888766552 22357
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737 187 GYKTRGMAHAMLGHWEEAVHDLHVASKI 214 (399)
Q Consensus 187 a~~~~g~a~~~lg~~eeA~~~l~~Al~l 214 (399)
+++.+|.+|..+|..+.|+....+.+++
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8889999999999999998888777765
No 204
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.16 E-value=0.0068 Score=54.65 Aligned_cols=106 Identities=22% Similarity=0.151 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA-KGYKTRG 192 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~-~a~~~~g 192 (399)
+-.....+..++..+++++|+..+..++...- .+.+-.++|.+.+.++++++|+..++.... +.+. ..--.+|
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrG 166 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRG 166 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhh
Confidence 44667889999999999999999999996643 567778899999999999999998765432 3333 2355689
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHH
Q 044737 193 MAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLK 225 (399)
Q Consensus 193 ~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk 225 (399)
.++...|+-++|...|.+|+..++++...+++.
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~~~s~~~~~~lq 199 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALESDASPAAREILQ 199 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHccCChHHHHHHH
Confidence 999999999999999999999987765444443
No 205
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.0014 Score=62.64 Aligned_cols=92 Identities=14% Similarity=0.202 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC--------
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI----NPDS-------- 184 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l----~p~~-------- 184 (399)
|....+.|...|+.|+|+.|+..|+.|+...- +..+-+|+|.|+++.++|..|++.....|+. .|..
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg 223 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG 223 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc
Confidence 45667789999999999999999999999988 8888899999999999999999988777664 3332
Q ss_pred -----------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 044737 185 -----------------AKGYKTRGMAHAMLGHWEEAVHDLH 209 (399)
Q Consensus 185 -----------------~~a~~~~g~a~~~lg~~eeA~~~l~ 209 (399)
+.++..++.+++..++++.|.+.+.
T Consensus 224 iDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 224 IDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred CchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 5688889999999999999887654
No 206
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.15 E-value=0.018 Score=65.14 Aligned_cols=84 Identities=13% Similarity=0.123 Sum_probs=35.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Q 044737 128 AISEGKLDEAIELSTEAIMLN--PSAIMYATRASVYIKMKKPNAAIRDATAALEIN-PDSAKGYKTRGMAHAMLGHWEEA 204 (399)
Q Consensus 128 ~~~~g~~~~Ai~~y~~Ai~l~--P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~-p~~~~a~~~~g~a~~~lg~~eeA 204 (399)
|.+.|++++|+..|.+..... |+...|..+..+|.+.+++++|+..+...++.. +.+...|..+..+|...|++++|
T Consensus 624 y~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 334444444444444333331 133344444444444444444444444444332 12333444444444444444444
Q ss_pred HHHHHHH
Q 044737 205 VHDLHVA 211 (399)
Q Consensus 205 ~~~l~~A 211 (399)
+..|+..
T Consensus 704 ~~lf~eM 710 (1060)
T PLN03218 704 LELYEDI 710 (1060)
T ss_pred HHHHHHH
Confidence 4444444
No 207
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.14 E-value=0.004 Score=53.60 Aligned_cols=70 Identities=16% Similarity=0.057 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
....+++.|...++.++|.+|+..++.+....|-. .++.+.++.+|+..++|++|+..+++-++|+|+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 67788899999999999999999999999988754 57999999999999999999999999999999973
No 208
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.12 E-value=0.0023 Score=58.69 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHH
Q 044737 150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEI 220 (399)
Q Consensus 150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~ 220 (399)
.+.+++.||..|-.+|-+.-|..|++++|.++|+-+.++..+|.-+...|+|+.|.+.|...+++||.+..
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y 134 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 134 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH
Confidence 67888899999999999999999999999999999999999999999999999999999999999998753
No 209
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.12 E-value=0.04 Score=47.60 Aligned_cols=99 Identities=26% Similarity=0.259 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIM--LNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM- 193 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~--l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~- 193 (399)
.......+..+...+++..++..+..++. ..+ ....+...+.++..++++..++..+..++..++.....+...+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 45667788889999999999999999998 677 89999999999999999999999999999998888666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCC
Q 044737 194 AHAMLGHWEEAVHDLHVASKIDF 216 (399)
Q Consensus 194 a~~~lg~~eeA~~~l~~Al~ldp 216 (399)
++...++++.|+..|.+++.++|
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Confidence 89999999999999999988877
No 210
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.12 E-value=0.013 Score=52.20 Aligned_cols=107 Identities=21% Similarity=0.193 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhH-
Q 044737 167 PNAAIRDATAALEINPDSAKGYKTRGMAHAMLGH----------WEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRI- 234 (399)
Q Consensus 167 ~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~----------~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~- 234 (399)
|+.|.+.++.+...||.++.++++.|.++..+.+ +++|+.-|+.|+.|+|+. .+.-.+..+...+..+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 7889999999999999999999999999988744 567889999999999997 4444455544433332
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044737 235 ----------EEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKK 273 (399)
Q Consensus 235 ----------~e~~~~ye~l~~~~e~kk~~~er~~~~~~A~~~~~~~~k 273 (399)
..+..+|++.-.+.-....|++..+-..+|-+.+.+-.+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~ 135 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHK 135 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHH
Confidence 222233333333333344566665555666665554443
No 211
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.11 E-value=0.0009 Score=42.45 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDS 184 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~ 184 (399)
+.+|+.+|.+|.++++++.|+..+.++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3578889999999999999999999999988853
No 212
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.10 E-value=0.073 Score=47.95 Aligned_cols=95 Identities=14% Similarity=0.068 Sum_probs=83.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCCHH
Q 044737 124 KAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALE-INPDSAKGYKTRGMAHAMLGHWE 202 (399)
Q Consensus 124 ~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~-l~p~~~~a~~~~g~a~~~lg~~e 202 (399)
.+...-+.=+.+.+++..++.+.+.|...-.+.+|.+...+|++.+|...|.+++. +--+++..++-++.+.+.++++.
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 44455566688999999999999999666678899999999999999999999887 56678899999999999999999
Q ss_pred HHHHHHHHHHhhCCcH
Q 044737 203 EAVHDLHVASKIDFDE 218 (399)
Q Consensus 203 eA~~~l~~Al~ldp~~ 218 (399)
.|...+++..+.+|.-
T Consensus 142 ~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 142 AAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHHHHhhcCCcc
Confidence 9999999999998753
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.0098 Score=56.06 Aligned_cols=101 Identities=15% Similarity=0.152 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH----HHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737 120 EAKAKAMEAISEGKLDEAIELST----EAIMLNP---SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~----~Ai~l~P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g 192 (399)
-....|....+.|+.+.|-..|+ .+-.++- +...+.|.+.+|+-.++|..|...+++++..||.++.+-.++|
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKA 293 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKA 293 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHH
Confidence 34467788888888888888887 3444444 5667778888888889999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCcHHH
Q 044737 193 MAHAMLGHWEEAVHDLHVASKIDFDEEI 220 (399)
Q Consensus 193 ~a~~~lg~~eeA~~~l~~Al~ldp~~~~ 220 (399)
.|+..+|+...|++.++.++.++|....
T Consensus 294 LcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 294 LCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 9999999999999999999999998643
No 214
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.02 E-value=0.0039 Score=44.44 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHH
Q 044737 187 GYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAA 222 (399)
Q Consensus 187 a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~ 222 (399)
.+|.+|.+++++|+|++|...++.+|+++|+|....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 566777777777777777777777777777774333
No 215
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.034 Score=53.29 Aligned_cols=99 Identities=23% Similarity=0.191 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH---------------------
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATA--------------------- 176 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~--------------------- 176 (399)
+.....+..+...+++.+|...|..++...| +..+...++.||+..|+++.|...+..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 3456778889999999999999999999999 999999999999999999776554433
Q ss_pred -------------HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737 177 -------------ALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD 217 (399)
Q Consensus 177 -------------Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~ 217 (399)
.+..||++..+-+.+|..|...|++++|+..+-..++.|-.
T Consensus 215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 23348889999999999999999999999988888887654
No 216
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.90 E-value=0.0043 Score=44.20 Aligned_cols=42 Identities=24% Similarity=0.156 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737 152 IMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM 193 (399)
Q Consensus 152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~ 193 (399)
.+++.+|.+++++++|..|.+.|+.+|+++|++.++...+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 467889999999999999999999999999999987655443
No 217
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.88 E-value=0.023 Score=57.54 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM 197 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~ 197 (399)
+..|..-|....++.+...|...+-.||-.+|...++...-..-+++++++.+...|++-|+..|.+..+|...|..-..
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~ 483 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETS 483 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHH
Confidence 44556666667777788888888888888888444555555556778888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhhCCcH-H--HHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 198 LGHWEEAVHDLHVASKIDFDE-E--IAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 198 lg~~eeA~~~l~~Al~ldp~~-~--~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
||+++.|...|.-|+...--+ + .+...-..+-.....+..+..|+++-.
T Consensus 484 LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 484 LGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred hhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 888888888888887654322 1 122222223344455556666665543
No 218
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.88 E-value=0.01 Score=64.52 Aligned_cols=90 Identities=8% Similarity=-0.042 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCcHHHHHHHHHH
Q 044737 150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASK--IDFDEEIAAVLKKV 227 (399)
Q Consensus 150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~--ldp~~~~~~~lk~v 227 (399)
+...|..+..+|.+.|+++.|...|++..+ .+...|..+..+|...|++++|+..|++.++ +.|+..+...+-..
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 435 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 334444444455555555555555544432 2345666666777777777777777776654 34555443333333
Q ss_pred hHHHHhHHHHHHHHH
Q 044737 228 EPNALRIEEHRRKYD 242 (399)
Q Consensus 228 ~~~~~k~~e~~~~ye 242 (399)
..+.+.+.+....++
T Consensus 436 ~~~~g~~~~a~~~f~ 450 (697)
T PLN03081 436 CRYSGLSEQGWEIFQ 450 (697)
T ss_pred HhcCCcHHHHHHHHH
Confidence 333333444444333
No 219
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.88 E-value=0.014 Score=63.47 Aligned_cols=122 Identities=11% Similarity=0.005 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLN--PSAIMYATRASVYIKMKKPNAAIRDATAALEIN-PDSAKGYKTRGMAHA 196 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~--P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~-p~~~~a~~~~g~a~~ 196 (399)
.|......|.+.|++++|+..|.+..... |+...|..+..+|.++++++.|.+.+..+++.. +.+...|..+..+|.
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH
Confidence 45566667777777777777777766543 266677777777777777777777777777765 445666777777777
Q ss_pred hcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHHHHHHH
Q 044737 197 MLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDR 243 (399)
Q Consensus 197 ~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~ye~ 243 (399)
+.|++++|...|++..+ |+-..+..+-...-..++..++...+++
T Consensus 372 k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 372 KWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred HCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777777776644 3323333333333344444444444443
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.81 E-value=0.0098 Score=61.58 Aligned_cols=80 Identities=20% Similarity=0.079 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHH
Q 044737 121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGY--KTRGM 193 (399)
Q Consensus 121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~--~~~g~ 193 (399)
+..+|..+...|+.++||+.|++++.... .+.++..++.||+-+.+|++|...+.+.++.+ .|.+++ |-.|.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 44666677777777777777777664221 46666777777777777777777777766644 344433 33456
Q ss_pred HHHhcCCH
Q 044737 194 AHAMLGHW 201 (399)
Q Consensus 194 a~~~lg~~ 201 (399)
|+..+++.
T Consensus 349 c~~~l~~~ 356 (468)
T PF10300_consen 349 CLLMLGRE 356 (468)
T ss_pred HHHhhccc
Confidence 66666666
No 221
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.80 E-value=0.0089 Score=49.08 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=73.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 044737 124 KAMEAISEGKLDEAIELSTEAIMLNP-S---AIMYATRASVYIKMKK-----------PNAAIRDATAALEINPDSAKGY 188 (399)
Q Consensus 124 ~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~---a~~~~nra~a~~~l~~-----------~~~Ai~d~~~Al~l~p~~~~a~ 188 (399)
++..+|..|++-+|++..+..|..++ . +.++...|.+++++.. .-.++..+.+++.+.|+.+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57789999999999999999999988 3 3667777777766532 3457888888999999888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737 189 KTRGMAHAMLGHWEEAVHDLHVASKID 215 (399)
Q Consensus 189 ~~~g~a~~~lg~~eeA~~~l~~Al~ld 215 (399)
+.+|.-+-....|++++.-.+++|.+.
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 888887777777888888888887654
No 222
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=96.78 E-value=0.015 Score=62.69 Aligned_cols=16 Identities=88% Similarity=1.975 Sum_probs=8.1
Q ss_pred CCCCCCCCCCCCCCCC
Q 044737 305 FPGGMPGGFPGGMPGG 320 (399)
Q Consensus 305 ~~gg~~gg~~gg~~g~ 320 (399)
||+||||||||||||+
T Consensus 620 ~~~~~~~~~~~~~~~~ 635 (653)
T PTZ00009 620 MPGGMPGGMPGGMPGG 635 (653)
T ss_pred CCCCCCCCCCCCCCCC
Confidence 3444555555555544
No 223
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.76 E-value=0.034 Score=60.00 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=83.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 044737 125 AMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEE 203 (399)
Q Consensus 125 g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~ee 203 (399)
-...+..++|.+|+...++.++..| ...+..-.|..++++|++.+|...++..-.+.+++...+-.+-.+|..++++++
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 3456778899999999999999999 777778889999999999999966665556677888889999999999999999
Q ss_pred HHHHHHHHHhhCCcHH
Q 044737 204 AVHDLHVASKIDFDEE 219 (399)
Q Consensus 204 A~~~l~~Al~ldp~~~ 219 (399)
|+..|++++..+|...
T Consensus 96 ~~~~Ye~~~~~~P~ee 111 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEE 111 (932)
T ss_pred HHHHHHHHHhhCCcHH
Confidence 9999999999999953
No 224
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.0089 Score=57.25 Aligned_cols=85 Identities=12% Similarity=0.106 Sum_probs=78.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044737 127 EAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAV 205 (399)
Q Consensus 127 ~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~ 205 (399)
.+.+..+|..||++++--.+.+| +...++.+|.||+...+|..|...|++...+.|...+..+..+..++..+.+..|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 34788899999999999999999 99999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 044737 206 HDLHVA 211 (399)
Q Consensus 206 ~~l~~A 211 (399)
......
T Consensus 99 rV~~~~ 104 (459)
T KOG4340|consen 99 RVAFLL 104 (459)
T ss_pred HHHHHh
Confidence 765544
No 225
>PRK10941 hypothetical protein; Provisional
Probab=96.59 E-value=0.028 Score=53.86 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~ 196 (399)
.-+.+.=..+.+.++|+.|+.+.+..+.++| ++.-+.-||.+|.+++.+..|+.|++.-|+..|+.+.+...+..+..
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3445566778999999999999999999999 99999999999999999999999999999999999988776665543
No 226
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.58 E-value=0.016 Score=56.78 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIML-----NP--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS-------- 184 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l-----~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~-------- 184 (399)
.+...|++++..+.|+++++.|+.|+++ +| ...++..++..|..++++++|+-...+|.++--..
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 3445899999999999999999999998 34 57889999999999999999999999998874322
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--cH-HH----HHHHHHHhHHHHhHHHHHHHHH
Q 044737 185 --AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDF--DE-EI----AAVLKKVEPNALRIEEHRRKYD 242 (399)
Q Consensus 185 --~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp--~~-~~----~~~lk~v~~~~~k~~e~~~~ye 242 (399)
.-++|+++.+++.+|..-.|.++++.|.++.- .| .+ ...+..+.......+...+.|+
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 24678899999999999999999999987753 22 22 1234444444444444444443
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.55 E-value=0.02 Score=49.15 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALE 179 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~ 179 (399)
...+...+..+...|+|++|+..+.+++.++| +-.+|..+-.+|..+|++..|++.|+++..
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35566777788899999999999999999999 999999999999999999999999887654
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.13 Score=48.10 Aligned_cols=102 Identities=17% Similarity=0.057 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLN-----P--SAIMYATRASVYIKMKKPNAAIRDATAALEIN-----PDS 184 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~-----P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~-----p~~ 184 (399)
.+..+...++.+-..++|++|..++.+|++-. + -+..|-..+.....+..|.+++..+++|+.+. |+-
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 34556666777778899999999999999543 2 35667777777788999999999999999874 555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 185 AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 185 ~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
+-.-+-++.=....-+.++|+..|++++.+--.+
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 5555555555667788999999999999876544
No 229
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.015 Score=55.11 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHH
Q 044737 150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKV 227 (399)
Q Consensus 150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v 227 (399)
...+..|+=.+|...++|+.|+...++.|.++|.++.-+.-+|.+|..++.+.-|+.++...++.-|++.+...++.-
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 356677788889999999999999999999999999999999999999999999999999999999999877766653
No 230
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.53 E-value=0.065 Score=59.74 Aligned_cols=98 Identities=9% Similarity=0.034 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-------SAIMYATRASVYIKMKKPNAAIRDATAALEINPD------- 183 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~------- 183 (399)
+..+...|..+...|++++|+..|.+++.+.. ...++.++|.+++..|++..|...+.+++.+-..
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 34456778888999999999999999987632 3456778899999999999999999998886221
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737 184 -SAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215 (399)
Q Consensus 184 -~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld 215 (399)
....+..+|.++...|++++|...+.+++.+.
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 12345678888999999999999999988763
No 231
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.01 Score=55.34 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAK 186 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~ 186 (399)
-+.+-...++..++|-++++++++.|+..| +..+|+.||.++...=+..+|..|+.++|+++|.-..
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 456788899999999999999999999999 9999999999999999999999999999999996543
No 232
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.49 E-value=0.0036 Score=57.76 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=36.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 162 IKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 162 ~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
.+.++.+.|.+.|++|+.+-|.|...|+|+|.-..+.|+++.|.+.|++.+++||++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344556666666666666666666666666666666666666666666666666655
No 233
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.43 E-value=0.1 Score=58.19 Aligned_cols=95 Identities=15% Similarity=0.046 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP--S----AIMYATRASVYIKMKKPNAAIRDATAALEINPDS------AKG 187 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P--~----a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~------~~a 187 (399)
.....+..++..|+|++|...+.+++...+ . ..++..+|.++...|++..|+..+.+++.+.... ..+
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 334578888999999999999999998655 2 3566889999999999999999999999763321 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737 188 YKTRGMAHAMLGHWEEAVHDLHVASKI 214 (399)
Q Consensus 188 ~~~~g~a~~~lg~~eeA~~~l~~Al~l 214 (399)
+.++|.++...|++++|...+++++.+
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 778899999999999999999999886
No 234
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.37 E-value=0.0065 Score=39.38 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737 187 GYKTRGMAHAMLGHWEEAVHDLHVASKID 215 (399)
Q Consensus 187 a~~~~g~a~~~lg~~eeA~~~l~~Al~ld 215 (399)
+|.++|.+|..+|+|++|+..|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57889999999999999999999966554
No 235
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.13 Score=48.78 Aligned_cols=97 Identities=19% Similarity=0.161 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737 121 AKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKM----KKPNAAIRDATAALEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l----~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~ 196 (399)
....-+++.+..+++-|.....+...++-+ ..+..+|.+|+++ .++..|.-.|+..-.-.|..+..+.-.+.|+.
T Consensus 140 ~Al~VqI~lk~~r~d~A~~~lk~mq~ided-~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 140 AALNVQILLKMHRFDLAEKELKKMQQIDED-ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHH
Confidence 333445556666666666666665555441 1111223333222 23555666666555544455555555666666
Q ss_pred hcCCHHHHHHHHHHHHhhCCcH
Q 044737 197 MLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 197 ~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
.+++|++|...++.||.-++.+
T Consensus 219 ~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred HhcCHHHHHHHHHHHHhccCCC
Confidence 6666666666666666665554
No 236
>PLN03077 Protein ECB2; Provisional
Probab=96.36 E-value=0.073 Score=59.25 Aligned_cols=111 Identities=14% Similarity=0.070 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIML--NPSAIMYATRASVYIKMKKPNAAIRDATAALEINP--DSAKGYKTRGM 193 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l--~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p--~~~~a~~~~g~ 193 (399)
...|......|.+.|++++|+..|++.++. .|+...|..+-.+|.+.|.+++|+..++...+..+ .+...|..+..
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 457888889999999999999999998875 45667777777789999999999999999885432 24578889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhH
Q 044737 194 AHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEP 229 (399)
Q Consensus 194 a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~ 229 (399)
+|.+.|++++|...+++. .+.|+..++..|-....
T Consensus 634 ~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACR 668 (857)
T ss_pred HHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Confidence 999999999999998875 47788766655444443
No 237
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.31 E-value=0.044 Score=52.79 Aligned_cols=84 Identities=21% Similarity=0.202 Sum_probs=59.0
Q ss_pred CHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 044737 111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYK 189 (399)
Q Consensus 111 ~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~ 189 (399)
.....++|......|....+.|+.++|..+|.-|+.+.| +..++...|...-.-++.-+|-.+|.+||.++|.+.+|+.
T Consensus 109 ~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 109 DPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred CchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 334455666666666677777777777777777777777 7777777777666666667777777777777777777777
Q ss_pred HHHHH
Q 044737 190 TRGMA 194 (399)
Q Consensus 190 ~~g~a 194 (399)
+|++.
T Consensus 189 nR~RT 193 (472)
T KOG3824|consen 189 NRART 193 (472)
T ss_pred hhhcc
Confidence 66644
No 238
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.30 E-value=0.0078 Score=37.49 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 044737 154 YATRASVYIKMKKPNAAIRDATAALEINPD 183 (399)
Q Consensus 154 ~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~ 183 (399)
++++|.||.++|++++|+..+++++...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555555555555555555555554444
No 239
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.28 E-value=0.017 Score=55.52 Aligned_cols=59 Identities=20% Similarity=0.045 Sum_probs=56.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 161 YIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 161 ~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
..+.|+.+.|...+..|+.+.|++++++...|......++.-+|-.+|-+||.++|.|.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 37889999999999999999999999999999999999999999999999999999884
No 240
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.27 E-value=0.0067 Score=36.20 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 044737 153 MYATRASVYIKMKKPNAAIRDATAALEINP 182 (399)
Q Consensus 153 ~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p 182 (399)
+|.++|.+|..+++++.|+..++++++++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555544
No 241
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.046 Score=57.13 Aligned_cols=106 Identities=15% Similarity=0.024 Sum_probs=88.2
Q ss_pred cCHHhHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 044737 110 VTDEKREAA-AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-------SAIMYATRASVYIKMKKPNAAIRDATAALEIN 181 (399)
Q Consensus 110 ~~ee~~~~a-~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~ 181 (399)
+|.|.+.-+ .-+.+.|..+|+..+|..+++.|...++.-| .+.+..+++.||+++.+.+.|++.+..|=+.+
T Consensus 345 lTkE~~~~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d 424 (872)
T KOG4814|consen 345 LTKEAISCIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD 424 (872)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 344444322 4567899999999999999999999999866 37888999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737 182 PDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215 (399)
Q Consensus 182 p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld 215 (399)
|.++-.-+..-.+...-+.-++|+.++.+....-
T Consensus 425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 9998776767777777888899988887776543
No 242
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.093 Score=48.81 Aligned_cols=101 Identities=18% Similarity=0.072 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q 044737 118 AAEAKAKAMEAISE-GKLDEAIELSTEAIMLNP-------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS----- 184 (399)
Q Consensus 118 a~~~k~~g~~~~~~-g~~~~Ai~~y~~Ai~l~P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----- 184 (399)
|.-+...|..|-.. .++++||.+|++|-.... ...++...|..-..+++|..||+.|+++....-++
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 34455666666555 789999999999988754 24566666777778999999999999987765444
Q ss_pred -HHHHH-HHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 185 -AKGYK-TRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 185 -~~a~~-~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
++.|+ ..|.||+-..+.-.+...+++...++|.-
T Consensus 193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 44444 45677777799999999999999999975
No 243
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.23 E-value=0.0066 Score=37.83 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 186 KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
.+++++|.++..+|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999998863
No 244
>PLN03077 Protein ECB2; Provisional
Probab=96.19 E-value=0.084 Score=58.77 Aligned_cols=116 Identities=15% Similarity=0.103 Sum_probs=82.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Q 044737 123 AKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEI--NPDSAKGYKTRGMAHAMLGH 200 (399)
Q Consensus 123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l--~p~~~~a~~~~g~a~~~lg~ 200 (399)
..-..|.+.|++++|...|... .|+...|..+..+|.+.|++++|+..|++.++. .|+.. .|..+-.++...|.
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~ 604 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGM 604 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcCh
Confidence 3446778889999999988875 338888888999999999999999999987764 45543 45555567888899
Q ss_pred HHHHHHHHHHHHh---hCCcHHHHHHHHHHhHHHHhHHHHHHHHH
Q 044737 201 WEEAVHDLHVASK---IDFDEEIAAVLKKVEPNALRIEEHRRKYD 242 (399)
Q Consensus 201 ~eeA~~~l~~Al~---ldp~~~~~~~lk~v~~~~~k~~e~~~~ye 242 (399)
+++|...|+...+ +.|+-.....+-.+.-+.+++.++...++
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999888773 35665544444444444455555444443
No 245
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.11 E-value=0.0072 Score=36.05 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737 186 KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD 217 (399)
Q Consensus 186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~ 217 (399)
.+|+++|.++..+++++.|+..|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 57899999999999999999999999999885
No 246
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.04 E-value=0.013 Score=37.97 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737 153 MYATRASVYIKMKKPNAAIRDATAALEI 180 (399)
Q Consensus 153 ~~~nra~a~~~l~~~~~Ai~d~~~Al~l 180 (399)
+|.++|.+|.++|+|++|+..|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4778889999999999999999886654
No 247
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.03 E-value=0.073 Score=42.25 Aligned_cols=49 Identities=31% Similarity=0.280 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 170 AIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 170 Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
.+..+.+++..+|++..+.+.+|.++...|+|++|+..|-.+++.+++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4566777888888888888888888888888888888888888877653
No 248
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.98 E-value=0.15 Score=53.00 Aligned_cols=96 Identities=22% Similarity=0.109 Sum_probs=84.6
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737 123 AKAMEAI-SEGKLDEAIELSTEAIMLNP---SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML 198 (399)
Q Consensus 123 ~~g~~~~-~~g~~~~Ai~~y~~Ai~l~P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l 198 (399)
..+..|- -.|+..+|+.+|..|+.+.| ...++..+|.++.+.|...+|--.+..|+.--|..+.-||.++.++..+
T Consensus 217 ~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml 296 (886)
T KOG4507|consen 217 NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAML 296 (886)
T ss_pred HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHH
Confidence 4444443 56999999999999999977 6788889999999999998888888899988888888899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCcH
Q 044737 199 GHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 199 g~~eeA~~~l~~Al~ldp~~ 218 (399)
+.|...+..|..+.+.+|.-
T Consensus 297 ~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 297 GEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred hhhhhhhhhhhhhhccCcch
Confidence 99999999999999999874
No 249
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.94 E-value=0.079 Score=42.07 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 044737 137 AIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS--AKGYKTRGMAHAMLGHWEEAVHDLH 209 (399)
Q Consensus 137 Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~--~~a~~~~g~a~~~lg~~eeA~~~l~ 209 (399)
.+..+.+++..+| +..+.+.+|.+++..|+|++|++.+-.++..++++ ..+...+=.++..+|.-+.-+..|+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 4677899999999 99999999999999999999999999999999887 3444444445555555444443333
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.82 E-value=0.034 Score=54.68 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSA-----KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~-----~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
..+|.|++..+-++.+|.+++.++...+.+....+ .++..++.||..++.++.+++.|++|+++..++
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~ 155 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN 155 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 67888999999999999999999999988865443 678889999999999999999999999986543
No 251
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.80 E-value=0.02 Score=58.06 Aligned_cols=110 Identities=16% Similarity=0.103 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HH------hCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEA-IM------LNP---SAIMYATRASVYIKMKKPNAAIRDATAALE-------- 179 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~A-i~------l~P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~-------- 179 (399)
+..+..+.+.+|-.|+|.+|++.+... |. +.| ...+|.|+|.++++++.|..++..|.+||+
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 446677888999999999999987532 22 234 456779999999999999999999999996
Q ss_pred -hCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHH
Q 044737 180 -INP---------DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKV 227 (399)
Q Consensus 180 -l~p---------~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v 227 (399)
+.| ..-..+|+.|.+|...|+.-.|.++|.+++..-..+ .+|-.+.++
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC 378 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 112 235689999999999999999999999999887766 455555554
No 252
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=0.43 Score=44.54 Aligned_cols=130 Identities=23% Similarity=0.177 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS---- 184 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---- 184 (399)
+.++-+...||.|--.++|..|=..|-+|-.+.- .+..|.--+.||-+. ++++|++.++++|++.-+-
T Consensus 32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~ 110 (288)
T KOG1586|consen 32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFT 110 (288)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHH
Confidence 3445555666777777899999999988877632 477888888888655 9999999999999986543
Q ss_pred --HHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCcHHH----HH-HHHHH--hHHHHhHHHHHHHHHHHHH
Q 044737 185 --AKGYKTRGMAHA-MLGHWEEAVHDLHVASKIDFDEEI----AA-VLKKV--EPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 185 --~~a~~~~g~a~~-~lg~~eeA~~~l~~Al~ldp~~~~----~~-~lk~v--~~~~~k~~e~~~~ye~l~~ 246 (399)
++.+..+|.+|- .+.+++.|+..|++|-+.-..++. .. .||-. ...+.++....+.|+.+.+
T Consensus 111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777776 458999999999999877655432 12 33322 2334555555555655544
No 253
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.74 Score=43.67 Aligned_cols=113 Identities=17% Similarity=0.150 Sum_probs=90.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH-HH
Q 044737 128 AISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMK-KPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWE-EA 204 (399)
Q Consensus 128 ~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~-~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~e-eA 204 (399)
+++..+-..|+.+-..+|.++| +...|..|=.|+..++ +..+-++.++.+++-+|.+-+.|..|-.+...++++. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 3455667899999999999999 8888888888877766 4577899999999999999999999999999999888 77
Q ss_pred HHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHH
Q 044737 205 VHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRK 240 (399)
Q Consensus 205 ~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ 240 (399)
+..++.++..|-.| -++...+.+....+..+....+
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y 169 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAY 169 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 88889999988776 5666666665555554443333
No 254
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.74 E-value=0.22 Score=50.93 Aligned_cols=85 Identities=12% Similarity=0.006 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 044737 135 DEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGH-WEEAVHDLHVAS 212 (399)
Q Consensus 135 ~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~-~eeA~~~l~~Al 212 (399)
..-+..|..|+...+ +..+|.+......+.+.|.+--..|.++|..+|+++..|..-|.-.+..+. .+.|...+.++|
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 455678999999999 999999988887788889999999999999999999999999988888776 899999999999
Q ss_pred hhCCcHH
Q 044737 213 KIDFDEE 219 (399)
Q Consensus 213 ~ldp~~~ 219 (399)
+.+|+.+
T Consensus 168 R~npdsp 174 (568)
T KOG2396|consen 168 RFNPDSP 174 (568)
T ss_pred hcCCCCh
Confidence 9999984
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.67 E-value=0.24 Score=51.39 Aligned_cols=88 Identities=23% Similarity=0.161 Sum_probs=77.4
Q ss_pred cCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 044737 131 EGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA----KGYKTRGMAHAMLGHWEEAV 205 (399)
Q Consensus 131 ~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~----~a~~~~g~a~~~lg~~eeA~ 205 (399)
......|.+.+.......| .+..+...|..+...|+.+.|+..+++++.....+. -.++.++.+|..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4567889999999999999 999999999999999999999999999996554443 36888999999999999999
Q ss_pred HHHHHHHhhCCcH
Q 044737 206 HDLHVASKIDFDE 218 (399)
Q Consensus 206 ~~l~~Al~ldp~~ 218 (399)
.++.+.++.+.-.
T Consensus 326 ~~f~~L~~~s~WS 338 (468)
T PF10300_consen 326 EYFLRLLKESKWS 338 (468)
T ss_pred HHHHHHHhccccH
Confidence 9999999977654
No 256
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.65 E-value=0.19 Score=45.11 Aligned_cols=97 Identities=14% Similarity=-0.013 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HHH
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPD--SA----KGY 188 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~--~~----~a~ 188 (399)
..+..+|.-|++.|+++.|++.|.++...+- ....+.++-.+.+-.++|..+....++|-.+-.. +. +..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5678899999999999999999999988765 5677888888889999999999998888765322 21 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737 189 KTRGMAHAMLGHWEEAVHDLHVASKID 215 (399)
Q Consensus 189 ~~~g~a~~~lg~~eeA~~~l~~Al~ld 215 (399)
...|.++...++|..|...|-.++.-.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 445677778899999998887775443
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.63 E-value=1 Score=42.50 Aligned_cols=99 Identities=16% Similarity=0.101 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHH-
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKK--------PNAAIRDATAALEINPDSAK- 186 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~--------~~~Ai~d~~~Al~l~p~~~~- 186 (399)
.....+-++++.++|+.|+....+-|++.| -.-+++-+|.+++..=+ -..|+..+...|..-|++.-
T Consensus 73 a~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya 152 (254)
T COG4105 73 AQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA 152 (254)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch
Confidence 556788999999999999999999999999 35667778888776432 35788999999999998721
Q ss_pred --------------HH--HHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 187 --------------GY--KTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 187 --------------a~--~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
+. ...|.-|.+.|.|..|+.-++..++--|+.
T Consensus 153 ~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 153 PDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 11 224666889999999999999999886665
No 258
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.57 E-value=0.16 Score=47.03 Aligned_cols=90 Identities=22% Similarity=0.145 Sum_probs=70.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHh------CC--CHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCCC------CH
Q 044737 127 EAISEGKLDEAIELSTEAIML------NP--SAIMYATRASVYIKMKKP-------NAAIRDATAALEINPD------SA 185 (399)
Q Consensus 127 ~~~~~g~~~~Ai~~y~~Ai~l------~P--~a~~~~nra~a~~~l~~~-------~~Ai~d~~~Al~l~p~------~~ 185 (399)
.+-....+++||+.|.-||-. .+ .+.++..+|.+|..+++. ..|+..|.+|++.... ..
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 455567889999999888854 22 588899999999999984 4566666666665422 25
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 044737 186 KGYKTRGMAHAMLGHWEEAVHDLHVASKIDF 216 (399)
Q Consensus 186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp 216 (399)
..+|.+|.+++++|++++|+..|.+++..--
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 7889999999999999999999999987653
No 259
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.38 E-value=0.65 Score=42.15 Aligned_cols=94 Identities=14% Similarity=0.091 Sum_probs=61.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 044737 121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-S---AIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTRGM 193 (399)
Q Consensus 121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~---a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g~ 193 (399)
.+.........+.. +.+....+-+.-++ + ...-..+|.+++..++++.|+..+..++..--|. .-+-.|++.
T Consensus 56 ~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLAr 134 (207)
T COG2976 56 QYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLAR 134 (207)
T ss_pred HHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 33334444444443 44444444444454 2 2333457778889999999999999998654332 346688999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhC
Q 044737 194 AHAMLGHWEEAVHDLHVASKID 215 (399)
Q Consensus 194 a~~~lg~~eeA~~~l~~Al~ld 215 (399)
++..++.+++|+..+.....-+
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~ 156 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEES 156 (207)
T ss_pred HHHHhhhHHHHHHHHhcccccc
Confidence 9999999999998877654433
No 260
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.35 E-value=0.028 Score=51.99 Aligned_cols=60 Identities=23% Similarity=0.238 Sum_probs=56.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 044737 126 MEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA 185 (399)
Q Consensus 126 ~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~ 185 (399)
...++.++++.|.++|.+|+.+.| .+.-|+.+|....+.|++..|.+.|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345778999999999999999999 999999999999999999999999999999999874
No 261
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.32 E-value=0.37 Score=41.12 Aligned_cols=76 Identities=13% Similarity=0.104 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHH
Q 044737 150 SAIMYATRASVYIKMKK---PNAAIRDATAALE-INPD-SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVL 224 (399)
Q Consensus 150 ~a~~~~nra~a~~~l~~---~~~Ai~d~~~Al~-l~p~-~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~l 224 (399)
+....+|+|.|+.+..+ ..+.|..++..++ -.|. .....|.++..|+++++|+.++.++...++.+|+|.....|
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 66777888999887765 4567888888886 4443 35688889999999999999999999999999999643333
Q ss_pred H
Q 044737 225 K 225 (399)
Q Consensus 225 k 225 (399)
+
T Consensus 111 k 111 (149)
T KOG3364|consen 111 K 111 (149)
T ss_pred H
Confidence 3
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=0.3 Score=47.81 Aligned_cols=98 Identities=14% Similarity=0.010 Sum_probs=75.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHH---HHHHHHHHH
Q 044737 121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI-NPDSAK---GYKTRGMAH 195 (399)
Q Consensus 121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l-~p~~~~---a~~~~g~a~ 195 (399)
....+..++..|++.+|...+.+.+.-.| +..++..--.+|+.+|+...-...+.++|-. |++-+- ..--++..+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 33456667888999999999999999889 7777777777778888888888888888876 666543 233356677
Q ss_pred HhcCCHHHHHHHHHHHHhhCCcH
Q 044737 196 AMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 196 ~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
..+|-|++|.+..++|+++++.+
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D 208 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFD 208 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcc
Confidence 78888888888888888888877
No 263
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.013 Score=57.25 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 044737 254 ERERLRRRAEAQAAYEKAKKEEQSSSSE 281 (399)
Q Consensus 254 ~~er~~~~~~A~~~~~~~~k~~~~d~g~ 281 (399)
+.++|+.+..|++++++++||+.||...
T Consensus 40 ~~ekfkei~~AyevLsd~ekr~~yD~~g 67 (337)
T KOG0712|consen 40 AGEKFKEISQAYEVLSDPEKREIYDQYG 67 (337)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence 4568999999999999999999999554
No 264
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.11 E-value=0.36 Score=46.47 Aligned_cols=99 Identities=15% Similarity=0.041 Sum_probs=81.4
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHH
Q 044737 120 EAKAKAMEAIS-EGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA---KGYKTRGMA 194 (399)
Q Consensus 120 ~~k~~g~~~~~-~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~---~a~~~~g~a 194 (399)
.|...|..-+. .++...|...|+.+++..| +..+|......++.+++.+.|...+++++..-+... ..|......
T Consensus 37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~f 116 (280)
T PF05843_consen 37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEF 116 (280)
T ss_dssp HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 34455666555 6777779999999999999 999999999999999999999999999999876654 578888888
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 195 HAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 195 ~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
-...|+++...+.++++.++-|++
T Consensus 117 E~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 117 ESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHcCCHHHHHHHHHHHHHHhhhh
Confidence 889999999999999999998875
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.03 E-value=0.31 Score=50.00 Aligned_cols=90 Identities=13% Similarity=-0.033 Sum_probs=55.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcC
Q 044737 125 AMEAISEGKLDEAIELSTEAIMLNP---SAIMYATRASVYIKMKKPNAAIRDATAALEINPD--SAKGYKTRGMAHAMLG 199 (399)
Q Consensus 125 g~~~~~~g~~~~Ai~~y~~Ai~l~P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~--~~~a~~~~g~a~~~lg 199 (399)
|...++..........+-+.+..-. ..-+...+|.|..++|+.++||+.+...++.+|. +...++++-.++..++
T Consensus 230 gE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq 309 (539)
T PF04184_consen 230 GEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQ 309 (539)
T ss_pred HHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcC
Confidence 3333443333333333434443322 3344456777777888888888888877776664 4557777777888888
Q ss_pred CHHHHHHHHHHHHhh
Q 044737 200 HWEEAVHDLHVASKI 214 (399)
Q Consensus 200 ~~eeA~~~l~~Al~l 214 (399)
.|.++...+.+.-.+
T Consensus 310 ~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 310 AYADVQALLAKYDDI 324 (539)
T ss_pred CHHHHHHHHHHhccc
Confidence 887777777765433
No 266
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.00 E-value=0.19 Score=38.74 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEI 180 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l 180 (399)
..+....++|..+|...+.++||..++++++..+ ...++-.+..+|...|+|.+.+....+=+.+
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999999866 3555566777888899999988877655544
No 267
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.93 E-value=0.19 Score=42.78 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737 119 AEAKAKAMEAISEG---KLDEAIELSTEAIM-LNP--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192 (399)
Q Consensus 119 ~~~k~~g~~~~~~g---~~~~Ai~~y~~Ai~-l~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g 192 (399)
+..++.+.++.+.. +..+-|..++..++ -.| .-.+.+-+|..|+++++|+.++++++..|+..|+|.++...+-
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~ 112 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE 112 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 34566777777654 45678899999996 566 7788888999999999999999999999999999988765443
No 268
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.93 E-value=0.035 Score=56.42 Aligned_cols=79 Identities=13% Similarity=0.062 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--------CC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIM-L--------NP----------SAIMYATRASVYIKMKKPNAAIRDATAALE 179 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~-l--------~P----------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~ 179 (399)
..|.+.|.++|+.+.|..++.+|.+|++ . .| +..+.+|.|..|+.+|++-.|.+.+.+++.
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 3456889999999999999999999996 1 11 468899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHh
Q 044737 180 INPDSAKGYKTRGMAHAM 197 (399)
Q Consensus 180 l~p~~~~a~~~~g~a~~~ 197 (399)
.--.++..|+|++.|...
T Consensus 364 vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHhcCcHHHHHHHHHHHH
Confidence 999999999999998764
No 269
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.89 E-value=0.35 Score=48.17 Aligned_cols=101 Identities=20% Similarity=0.209 Sum_probs=81.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh---CC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737 126 MEAISEGKLDEAIELSTEAIML---NP------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 126 ~~~~~~g~~~~Ai~~y~~Ai~l---~P------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~ 196 (399)
...+..|+|+.||++....... .+ .+.++...+...+. -++..|..+...++++.|+.+.+-..-+.+|+
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf 274 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAARALF 274 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence 3457789999999998766543 22 35555656655544 35899999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCcHHHHHHHHHH
Q 044737 197 MLGHWEEAVHDLHVASKIDFDEEIAAVLKKV 227 (399)
Q Consensus 197 ~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v 227 (399)
..|+..++-..++.+.+.+|...++..+...
T Consensus 275 ~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~a 305 (531)
T COG3898 275 RDGNLRKGSKILETAWKAEPHPDIALLYVRA 305 (531)
T ss_pred hccchhhhhhHHHHHHhcCCChHHHHHHHHh
Confidence 9999999999999999999988776655544
No 270
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.86 E-value=2.4 Score=37.28 Aligned_cols=108 Identities=15% Similarity=0.015 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH 195 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~ 195 (399)
....+..........++..++...+.-.--+.| ...+-..-|..++..++|.+|++.++.+..-.|.++-+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 346778888889999999999999888778899 9999999999999999999999999999999998887777788899
Q ss_pred HhcCCHHHHHHHHHHHHhhCCcHHHHHHHH
Q 044737 196 AMLGHWEEAVHDLHVASKIDFDEEIAAVLK 225 (399)
Q Consensus 196 ~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk 225 (399)
+.+++..== .+-..+++..++.....+.+
T Consensus 89 ~~~~D~~Wr-~~A~evle~~~d~~a~~Lv~ 117 (160)
T PF09613_consen 89 YALGDPSWR-RYADEVLESGADPDARALVR 117 (160)
T ss_pred HHcCChHHH-HHHHHHHhcCCChHHHHHHH
Confidence 888876431 12344666666654333333
No 271
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.81 E-value=0.63 Score=44.23 Aligned_cols=101 Identities=9% Similarity=0.050 Sum_probs=84.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCC--CCHHHHHHHHH
Q 044737 122 KAKAMEAISEGKLDEAIELSTEAIMLNP--SAIMYATRASVYIKMKKPNAAIRDATAAL----EINP--DSAKGYKTRGM 193 (399)
Q Consensus 122 k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al----~l~p--~~~~a~~~~g~ 193 (399)
....+.+...+.|.-.+..|.+.|+.+| ...+...++.+.++.|+...|-..++++- .++- ...-.+.+.+.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 4567788889999999999999999996 99999999999999999999999998543 3332 23446667778
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCcHHHHH
Q 044737 194 AHAMLGHWEEAVHDLHVASKIDFDEEIAA 222 (399)
Q Consensus 194 a~~~lg~~eeA~~~l~~Al~ldp~~~~~~ 222 (399)
+|.-.++|.+|...|.+++..|+.+.++.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~ 289 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVAN 289 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhh
Confidence 88888999999999999999999886543
No 272
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.75 E-value=0.81 Score=52.16 Aligned_cols=86 Identities=15% Similarity=-0.052 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044737 132 GKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVA 211 (399)
Q Consensus 132 g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~A 211 (399)
|.-+.-.+.|.+|-+++.....|..++-.|.+..++.+|.+.++..++---...+.|..++..++...+-+.|...+.+|
T Consensus 1511 G~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rA 1590 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRA 1590 (1710)
T ss_pred CcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33344444555555555444555556666666666666666666655554455556666666666666666666666666
Q ss_pred HhhCCc
Q 044737 212 SKIDFD 217 (399)
Q Consensus 212 l~ldp~ 217 (399)
++.-|.
T Consensus 1591 L~~lPk 1596 (1710)
T KOG1070|consen 1591 LKSLPK 1596 (1710)
T ss_pred Hhhcch
Confidence 665554
No 273
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.13 Score=48.94 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=65.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737 123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH 195 (399)
Q Consensus 123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~ 195 (399)
+.=+.+...++++.|.....+.|.++| ++.-+.-||.+|.+++.+..|+.|++..++..|+.+.+-+.+....
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 444567889999999999999999999 9999999999999999999999999999999999998877776554
No 274
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.40 E-value=0.096 Score=34.17 Aligned_cols=30 Identities=27% Similarity=0.213 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAALEI 180 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l 180 (399)
+.++.++|.+|..+|+|.+|+..+.+++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 345666777777777777777777766664
No 275
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=94.35 E-value=7.8 Score=42.01 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=6.6
Q ss_pred CCcHHHHHHHHHH
Q 044737 381 NPKVAPIIAKMMA 393 (399)
Q Consensus 381 ~p~~~~~~~~l~~ 393 (399)
|+|+.+.++-|.+
T Consensus 697 DsKtaQnLsIflg 709 (1102)
T KOG1924|consen 697 DSKTAQNLSIFLG 709 (1102)
T ss_pred chHHHHHHHHHHh
Confidence 5555555555444
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.88 E-value=0.82 Score=42.98 Aligned_cols=93 Identities=24% Similarity=0.246 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CH---H
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIML-----NP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPD---SA---K 186 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l-----~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~---~~---~ 186 (399)
..+-..+..+-....|.+++.+|++|+.+ .| .+..-.-+|.-.+..-+++.|+..|++++.+--. .. .
T Consensus 72 KayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e 151 (308)
T KOG1585|consen 72 KAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE 151 (308)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 33344455555566777777777777766 34 4444455555556777788888888887765322 22 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 044737 187 GYKTRGMAHAMLGHWEEAVHDLHVA 211 (399)
Q Consensus 187 a~~~~g~a~~~lg~~eeA~~~l~~A 211 (399)
.|-..++++.++.+|.+|...+.+-
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 3444556677777887776665543
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.64 E-value=1.3 Score=45.56 Aligned_cols=85 Identities=16% Similarity=0.050 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044737 133 KLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDS--AKGYKTRGMAHAMLGHWEEAVHDLHV 210 (399)
Q Consensus 133 ~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~--~~a~~~~g~a~~~lg~~eeA~~~l~~ 210 (399)
-..+|.++|.+|++... ..+.+.......+.+- .++.....+ +.+-.++|.|..++|+.++|++.++.
T Consensus 215 Ti~Eae~l~rqAvkAgE---~~lg~s~~~~~~g~~~-------e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rd 284 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGE---ASLGKSQFLQHHGHFW-------EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRD 284 (539)
T ss_pred CHHHHHHHHHHHHHHHH---Hhhchhhhhhcccchh-------hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHH
Confidence 46788888998887743 1111111111111111 122222222 34556788899999999999999999
Q ss_pred HHhhCCcH---HHHHHHHHH
Q 044737 211 ASKIDFDE---EIAAVLKKV 227 (399)
Q Consensus 211 Al~ldp~~---~~~~~lk~v 227 (399)
.++..|.. .+.+.|-.+
T Consensus 285 Llke~p~~~~l~IrenLie~ 304 (539)
T PF04184_consen 285 LLKEFPNLDNLNIRENLIEA 304 (539)
T ss_pred HHhhCCccchhhHHHHHHHH
Confidence 99988763 344444443
No 278
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.60 E-value=0.44 Score=37.87 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=34.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737 162 IKMKKPNAAIRDATAALEINP---------DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD 217 (399)
Q Consensus 162 ~~l~~~~~Ai~d~~~Al~l~p---------~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~ 217 (399)
++.++|..|++.+.+.+..-. ....++.++|.++...|++++|+..++.|+++...
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345555555555444443311 12346677777778888888888888877776544
No 279
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.53 E-value=1 Score=44.04 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------------------------CHHHHHHHHHHHHHc
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-----------------------------------SAIMYATRASVYIKM 164 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-----------------------------------~a~~~~nra~a~~~l 164 (399)
.....+..+...|+..+|+..+...+.... .+.++..+|.-...+
T Consensus 186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 344566777778888888888877776100 234455555555555
Q ss_pred ------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHhhCCcH
Q 044737 165 ------KKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHW-----------------EEAVHDLHVASKIDFDE 218 (399)
Q Consensus 165 ------~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~-----------------eeA~~~l~~Al~ldp~~ 218 (399)
..++.++..|.+|++++|.+.++|+..|..+..+=.. ..|+..|-+|+.+.+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 6677788999999999999999999988877654222 23777777777777763
No 280
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.46 E-value=0.45 Score=45.74 Aligned_cols=61 Identities=26% Similarity=0.269 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVA 211 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~A 211 (399)
..++...|..|...+.|++|+..|++++.++|-+...|+-+-..+..+|+--.|++.|++.
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4566677888999999999999999999999999999999999999999977777766543
No 281
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.41 E-value=3.1 Score=40.54 Aligned_cols=104 Identities=20% Similarity=0.119 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C-C-----
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-----SAIMYATRASVYIKMKKPNAAIRDATAALEI--N-P----- 182 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l--~-p----- 182 (399)
..+..+...+..+.+.|.|+.|...+.++..+++ ...+..-.+..+...|+...|+..+...+.. . .
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 4567788999999999999999999999998764 3566777888889999999999998887771 1 0
Q ss_pred --------------------------CCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCcHH
Q 044737 183 --------------------------DSAKGYKTRGMAHAML------GHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 183 --------------------------~~~~a~~~~g~a~~~l------g~~eeA~~~l~~Al~ldp~~~ 219 (399)
..+++++.+|.....+ +.+++++..|..|++++|+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 1146777788877777 888999999999999999763
No 282
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.23 E-value=0.46 Score=37.75 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=47.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-----C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 044737 126 MEAISEGKLDEAIELSTEAIMLNP-----S-----AIMYATRASVYIKMKKPNAAIRDATAALEIN 181 (399)
Q Consensus 126 ~~~~~~g~~~~Ai~~y~~Ai~l~P-----~-----a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~ 181 (399)
....+.++|..|++.+.+.+.... . ..+..++|.++...|++++|+..+++||++-
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 346788999999999988887744 2 4667889999999999999999999999873
No 283
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.20 E-value=2.8 Score=48.10 Aligned_cols=131 Identities=15% Similarity=0.010 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPD--SAKGYKTRG 192 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~--~~~a~~~~g 192 (399)
+...-+....-.|-+..++++|.++|+.-++..- ....|...+..+++..+-++|...+.+||+.-|. +.+.....|
T Consensus 1528 d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1528 DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 3345677888899999999999999999999988 8899999999999999999999999999999998 788888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 193 MAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 193 ~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
..-++.|+-+.+...|+-.+.-+|.- +.|..+-+..-.+..+.-.|+.|+|.-.
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999865 6666665555555555555555555443
No 284
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.06 E-value=0.22 Score=32.37 Aligned_cols=30 Identities=30% Similarity=0.277 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737 185 AKGYKTRGMAHAMLGHWEEAVHDLHVASKI 214 (399)
Q Consensus 185 ~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l 214 (399)
+.++.++|.+|..+|+|++|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457899999999999999999999998875
No 285
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.82 E-value=1.1 Score=43.16 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737 150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKI 214 (399)
Q Consensus 150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l 214 (399)
...++..++.++...++++.++..+++.+.++|-+-.+|.++-.+|...|+...|+..|++..++
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 46777889999999999999999999999999999999999999999999999999999988774
No 286
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.80 E-value=1.7 Score=41.43 Aligned_cols=97 Identities=12% Similarity=0.071 Sum_probs=80.2
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737 123 AKAMEAIS----EGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM 197 (399)
Q Consensus 123 ~~g~~~~~----~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~ 197 (399)
+.|+.+.+ ..++..|.-.|++--...| +..+....|.|++.+++|++|...+..||.-++.++..+.++-.+-..
T Consensus 174 QLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 174 QLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALH 253 (299)
T ss_pred HHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 45555443 3568888888988888667 999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHH-HHHHhhCCcHH
Q 044737 198 LGHWEEAVHDL-HVASKIDFDEE 219 (399)
Q Consensus 198 lg~~eeA~~~l-~~Al~ldp~~~ 219 (399)
+|+-.++...+ .+....+|...
T Consensus 254 ~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 254 LGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred hCCChHHHHHHHHHHHhcCCcch
Confidence 99988877665 45555566654
No 287
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=92.74 E-value=0.82 Score=34.96 Aligned_cols=31 Identities=29% Similarity=0.311 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIML 147 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l 147 (399)
.|..+..+|..+=+.|+|.+||.+|++||.+
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4566677777777777777777777666554
No 288
>PRK14284 chaperone protein DnaJ; Provisional
Probab=92.55 E-value=0.25 Score=49.99 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
.++++++.+.+|++++.+++||+.||.
T Consensus 39 ~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 65 (391)
T PRK14284 39 EAEKRFKEVSEAYEVLSDAQKRESYDR 65 (391)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 356689999999999999999999996
No 289
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.37 E-value=3.2 Score=44.10 Aligned_cols=126 Identities=18% Similarity=0.217 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIML-NP------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS----AK 186 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l-~P------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----~~ 186 (399)
+.+|..+- -+..+++.+-|..|++|++. +| -..+|...|..|-..++.+.|...+++|++.+-.. +.
T Consensus 349 V~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~ 426 (835)
T KOG2047|consen 349 VEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAE 426 (835)
T ss_pred HHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHH
Confidence 44444443 34568899999999999974 66 47899999999999999999999999999987544 57
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc-------H------------HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737 187 GYKTRGMAHAMLGHWEEAVHDLHVASKIDFD-------E------------EIAAVLKKVEPNALRIEEHRRKYDRLR 245 (399)
Q Consensus 187 a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~-------~------------~~~~~lk~v~~~~~k~~e~~~~ye~l~ 245 (399)
.|+..|..-....+++.|+..++.|+.+-.. + .+|.++..+++.+.-+...+..|.+.-
T Consensus 427 vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 427 VWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8999999999999999999999999866322 1 134555555666666666666665543
No 290
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.28 E-value=0.21 Score=32.95 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737 186 KGYKTRGMAHAMLGHWEEAVHDLHVASKI 214 (399)
Q Consensus 186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~l 214 (399)
..|.++|.+.....+|+.|+.+|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677777777888888888888877765
No 291
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.26 E-value=1.6 Score=43.71 Aligned_cols=92 Identities=12% Similarity=-0.042 Sum_probs=71.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHh----CC-CHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHh
Q 044737 127 EAISEGKLDEAIELSTEAIML----NP-SAIMYATRASVYIK---MKKPNAAIRDATA-ALEINPDSAKGYKTRGMAHAM 197 (399)
Q Consensus 127 ~~~~~g~~~~Ai~~y~~Ai~l----~P-~a~~~~nra~a~~~---l~~~~~Ai~d~~~-Al~l~p~~~~a~~~~g~a~~~ 197 (399)
.|-..++|+.-|.+++..-.+ -+ ...+...+|.|+.+ .|+.+.|++.+.. .....+.++..|..+|.+|..
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 455667788777777655554 22 56667778888888 8999999999998 555567888999999999764
Q ss_pred c---------CCHHHHHHHHHHHHhhCCcH
Q 044737 198 L---------GHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 198 l---------g~~eeA~~~l~~Al~ldp~~ 218 (399)
+ ..++.|+..|.++.+++|+.
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 3 35788999999999999874
No 292
>PRK14295 chaperone protein DnaJ; Provisional
Probab=92.24 E-value=0.21 Score=50.55 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
.++++++.+.+|++++.++++|..||.
T Consensus 47 ~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 47 KAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred hHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 356789999999999999999999995
No 293
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=0.13 Score=49.99 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=35.6
Q ss_pred HHHHHHHHHH-----HHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhhcCC
Q 044737 237 HRRKYDRLRR-----EREERKVERE------------------RLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 237 ~~~~ye~l~~-----~~e~kk~~~e------------------r~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
.+++|+.|++ .+++|++||+ .|+.+..|+++++++++|..||.
T Consensus 15 ~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~ 80 (336)
T KOG0713|consen 15 GRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDT 80 (336)
T ss_pred CCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 3567777776 4677777776 78999999999999999999983
No 294
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.01 E-value=5.3 Score=40.11 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=48.5
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCC
Q 044737 121 AKAKAMEAIS---EGKLDEAIELSTEAIMLNP--SAIMYATRASVYIK---------MKKPNAAIRDATAALEINPDS 184 (399)
Q Consensus 121 ~k~~g~~~~~---~g~~~~Ai~~y~~Ai~l~P--~a~~~~nra~a~~~---------l~~~~~Ai~d~~~Al~l~p~~ 184 (399)
....|-++-+ .|+.++|+..+..++.... ++..|.-.|.+|-. ......|+..|.++.+++|+.
T Consensus 182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 182 KFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 3455666667 8999999999999666544 78888888887733 124678999999999998765
No 295
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=91.83 E-value=1.5 Score=47.96 Aligned_cols=98 Identities=18% Similarity=0.055 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML 198 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l 198 (399)
+....|-.+++.|++++|..+++..-...+ +-..+..+-.||..++++++|+..|++++..+|. -+.++.+=.||.+-
T Consensus 45 a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~ 123 (932)
T KOG2053|consen 45 AKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVRE 123 (932)
T ss_pred HHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHH
Confidence 444678899999999999955554333444 7888888999999999999999999999999999 88888888889888
Q ss_pred CCHHHHHHHHHHHHhhCCcH
Q 044737 199 GHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 199 g~~eeA~~~l~~Al~ldp~~ 218 (399)
+.|.+=.+.--+..+.-|.+
T Consensus 124 ~~yk~qQkaa~~LyK~~pk~ 143 (932)
T KOG2053|consen 124 KSYKKQQKAALQLYKNFPKR 143 (932)
T ss_pred HHHHHHHHHHHHHHHhCCcc
Confidence 88876544444444455655
No 296
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.78 E-value=6 Score=38.86 Aligned_cols=80 Identities=11% Similarity=-0.030 Sum_probs=50.2
Q ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044737 139 ELSTEAIMLNP-SAIMYATRASVYIKMKK------------PNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAV 205 (399)
Q Consensus 139 ~~y~~Ai~l~P-~a~~~~nra~a~~~l~~------------~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~ 205 (399)
..|++.++-+| +..+|..+....-.+-. .+..+..+++||+.+|++...+..+=.+.....+-+...
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34666666777 66666666554433322 344566677777777777766666666666666666666
Q ss_pred HHHHHHHhhCCcH
Q 044737 206 HDLHVASKIDFDE 218 (399)
Q Consensus 206 ~~l~~Al~ldp~~ 218 (399)
+-+++++..+|++
T Consensus 86 ~~we~~l~~~~~~ 98 (321)
T PF08424_consen 86 KKWEELLFKNPGS 98 (321)
T ss_pred HHHHHHHHHCCCC
Confidence 6677777777665
No 297
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=91.34 E-value=0.27 Score=45.86 Aligned_cols=102 Identities=20% Similarity=0.135 Sum_probs=61.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhC---C-C---------HHHHHHHHHHHHHcCCH-HHHHH-HHHHHHH-h-CCCC--HHHH
Q 044737 128 AISEGKLDEAIELSTEAIMLN---P-S---------AIMYATRASVYIKMKKP-NAAIR-DATAALE-I-NPDS--AKGY 188 (399)
Q Consensus 128 ~~~~g~~~~Ai~~y~~Ai~l~---P-~---------a~~~~nra~a~~~l~~~-~~Ai~-d~~~Al~-l-~p~~--~~a~ 188 (399)
+|..|+|+.|++...-||+.+ | . +.-...-+...++.|+. +-.+. .+..+.. . -|+- ++.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 467899999999999999874 2 1 23333444444555552 22221 1222211 0 1333 4556
Q ss_pred HHHHHHHH---------hcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhH
Q 044737 189 KTRGMAHA---------MLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEP 229 (399)
Q Consensus 189 ~~~g~a~~---------~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~ 229 (399)
...|.+++ ..++...|+..|++|+.++|.-.+...++++..
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~ 222 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLER 222 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 66666663 446788999999999999998654444444443
No 298
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.17 E-value=0.35 Score=31.88 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 044737 152 IMYATRASVYIKMKKPNAAIRDATAALEIN 181 (399)
Q Consensus 152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~ 181 (399)
.+|..+|.+.+...+|..|+.||.+||++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467788888888888888999888888763
No 299
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.94 E-value=7 Score=37.43 Aligned_cols=103 Identities=12% Similarity=-0.023 Sum_probs=77.9
Q ss_pred HhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CC-----------CHHHHHHHHHHHHHcCCHHHH---HHH
Q 044737 113 EKREAAAEAKAKAMEAISEG-KLDEAIELSTEAIML----NP-----------SAIMYATRASVYIKMKKPNAA---IRD 173 (399)
Q Consensus 113 e~~~~a~~~k~~g~~~~~~g-~~~~Ai~~y~~Ai~l----~P-----------~a~~~~nra~a~~~l~~~~~A---i~d 173 (399)
.....+..+++.|..+++.+ +|+.|+..+++|+.+ .. ...++..++.+|+..+.++.. ++.
T Consensus 30 ~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~ 109 (278)
T PF08631_consen 30 MAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNA 109 (278)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 33566889999999999999 999999999999988 21 256777899999998877543 333
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737 174 ATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215 (399)
Q Consensus 174 ~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld 215 (399)
.+.+-.-.|+.+..++..=.++...++.+++.+.+.+.+.--
T Consensus 110 l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 110 LRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 333444457777777666566666889999999988887653
No 300
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.83 E-value=3.5 Score=41.40 Aligned_cols=93 Identities=18% Similarity=0.196 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASV--YIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM 197 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a--~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~ 197 (399)
.+...+...+-.|+|+.|...|+- .--+|...++-.||.. -..+|.++.|+++..+|-..-|.-+-++.-.-..++.
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeA-Ml~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~ 200 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEA-MLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCA 200 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHH-HhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh
Confidence 455677888899999999999975 4456633333344433 3578999999999999999999998888888888999
Q ss_pred cCCHHHHHHHHHHHHh
Q 044737 198 LGHWEEAVHDLHVASK 213 (399)
Q Consensus 198 lg~~eeA~~~l~~Al~ 213 (399)
.|+|+.|++.++....
T Consensus 201 ~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 201 AGDWDGALKLVDAQRA 216 (531)
T ss_pred cCChHHHHHHHHHHHH
Confidence 9999999998876543
No 301
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.79 E-value=10 Score=32.96 Aligned_cols=107 Identities=15% Similarity=0.047 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~ 196 (399)
+..+.+.....+...++.++-..+...--+.| ...+...-+..++..++|.+|++.++...+-.+..+-+--.++.|++
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34566667777778999998888877777889 88888999999999999999999999999988888877777888999
Q ss_pred hcCCHHHHHHHHHHHHhhCCcHHHHHHHH
Q 044737 197 MLGHWEEAVHDLHVASKIDFDEEIAAVLK 225 (399)
Q Consensus 197 ~lg~~eeA~~~l~~Al~ldp~~~~~~~lk 225 (399)
.+++.+==. .-..++..+++.++..+.+
T Consensus 90 al~Dp~Wr~-~A~~~le~~~~~~a~~Lv~ 117 (153)
T TIGR02561 90 AKGDAEWHV-HADEVLARDADADAVALVR 117 (153)
T ss_pred hcCChHHHH-HHHHHHHhCCCHhHHHHHH
Confidence 999854321 2234455555554333333
No 302
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=90.69 E-value=0.15 Score=49.98 Aligned_cols=75 Identities=15% Similarity=0.034 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA 194 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a 194 (399)
..++.+...++.+.|..|+.....+++.++ .+.+|+.|+.+|..+.++++|++++..+....|++......+..+
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 445577788899999999999999999888 999999999999999999999999999999999987654444333
No 303
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.68 E-value=1.3 Score=44.38 Aligned_cols=93 Identities=18% Similarity=0.096 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHH
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEIN--------PDSAKG 187 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~--------p~~~~a 187 (399)
.+...|.-|...|+++.|+++|.++-..+- .+..|.|.-.+-+-+++|........+|...- --.++.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 456788889999999999999999777766 46777787788888999999888888887651 012567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044737 188 YKTRGMAHAMLGHWEEAVHDLHVAS 212 (399)
Q Consensus 188 ~~~~g~a~~~lg~~eeA~~~l~~Al 212 (399)
++..|.+++.+++|..|...+-.+.
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888999999999999999887664
No 304
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=90.40 E-value=1.3 Score=45.84 Aligned_cols=89 Identities=19% Similarity=0.103 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCcH-HHHHHHHH
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML---GHWEEAVHDLHVASKIDFDE-EIAAVLKK 226 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l---g~~eeA~~~l~~Al~ldp~~-~~~~~lk~ 226 (399)
+..+..-+.-.+....+..||.+|.+++...|+....|.+|+.++.+. ++.-.|+.++..|++++|.. .++-+|.+
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 333344444444456678899999999999999999999999888765 46677999999999999987 55666666
Q ss_pred HhHHHHhHHHHHH
Q 044737 227 VEPNALRIEEHRR 239 (399)
Q Consensus 227 v~~~~~k~~e~~~ 239 (399)
+...+.+..++..
T Consensus 454 aL~el~r~~eal~ 466 (758)
T KOG1310|consen 454 ALNELTRYLEALS 466 (758)
T ss_pred HHHHHhhHHHhhh
Confidence 6555555544443
No 305
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.35 E-value=9.5 Score=41.85 Aligned_cols=64 Identities=19% Similarity=0.120 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAA----------LEINPD----------SAKGYKTRGMAHAMLGHWEEAVHDLHV 210 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~A----------l~l~p~----------~~~a~~~~g~a~~~lg~~eeA~~~l~~ 210 (399)
-..|++.|.-+-..++.+.|+.+|+++ |.-+|. +...|.|.|.-+...|+.+.|+..|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 456788888888888899999998874 333443 356788899888999999999999998
Q ss_pred HHhh
Q 044737 211 ASKI 214 (399)
Q Consensus 211 Al~l 214 (399)
|-..
T Consensus 938 A~D~ 941 (1416)
T KOG3617|consen 938 AKDY 941 (1416)
T ss_pred hhhh
Confidence 8543
No 306
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.27 E-value=21 Score=38.25 Aligned_cols=127 Identities=14% Similarity=-0.002 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH---HHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINP--DSA---KGYKTR 191 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p--~~~---~a~~~~ 191 (399)
...|...+...-..|-++.....|++.|.+-= .+.+-.|.|..+-.-.-|+++.+.|++.|.|-+ .-- ..|+..
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 44555556666667888888899999999877 888888888888777778999999999999853 222 244555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCcHH---HHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737 192 GMAHAMLGHWEEAVHDLHVASKIDFDEE---IAAVLKKVEPNALRIEEHRRKYDRL 244 (399)
Q Consensus 192 g~a~~~lg~~eeA~~~l~~Al~ldp~~~---~~~~lk~v~~~~~k~~e~~~~ye~l 244 (399)
....+.--+.+.|...|++||+..|... +.-....+++..+.+.....-|++.
T Consensus 557 fi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555666688999999999999988653 2334555556555555555555543
No 307
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.21 E-value=2.6 Score=47.27 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=76.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 044737 123 AKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKM----K---KPNAAIRDATAALEINPDSAKGYKTR 191 (399)
Q Consensus 123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l----~---~~~~Ai~d~~~Al~l~p~~~~a~~~~ 191 (399)
....+++..+.|+.|+..|.+.-...| -..+.+..|.+.+.. + .+.+|+.-+++.- -.|.-+--|+-+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhH
Confidence 556778899999999999999999998 456777777777643 2 3556666665432 346667788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 192 GMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 192 g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
|.+|..+++|++-+++|..|++.-|..+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999998874
No 308
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.12 E-value=2.3 Score=44.49 Aligned_cols=95 Identities=17% Similarity=0.002 Sum_probs=80.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHH------HHHH
Q 044737 124 KAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKP-NAAIRDATAALEINPDSAKGYKTR------GMAH 195 (399)
Q Consensus 124 ~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~-~~Ai~d~~~Al~l~p~~~~a~~~~------g~a~ 195 (399)
+...+...++...|+-....++..+| ++.++.|++.+....+.. ..++.++..+....|++......+ +..+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 45556677888889999999999999 999999999998777765 555666677999999998877777 8888
Q ss_pred HhcCCHHHHHHHHHHHHhhCCcH
Q 044737 196 AMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 196 ~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
..+++..++..++.+++.+.|.+
T Consensus 153 ~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 153 KLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred HHhccHHHHHHHHHHHHHhhhhh
Confidence 89999999999999999999987
No 309
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.97 E-value=2.7 Score=45.80 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----------HhCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAI----------MLNP-----------SAIMYATRASVYIKMKKPNAAIRDATAA 177 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai----------~l~P-----------~a~~~~nra~a~~~l~~~~~Ai~d~~~A 177 (399)
..+++.|..+-..++...|++.|+++- .-+| +..+|.+-|..+-..|+.+.|+..|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 456677777777788888888887653 2233 3567778888888899999999998886
Q ss_pred HH---------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------hCCcHHHHHHHHHHh--
Q 044737 178 LE---------------------INPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASK------IDFDEEIAAVLKKVE-- 228 (399)
Q Consensus 178 l~---------------------l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~------ldp~~~~~~~lk~v~-- 228 (399)
-. ....+-.|-|.+|+-|...|++.+|+..|.+|.. +...|.....|-.+.
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~ 1018 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALM 1018 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 32 2344556888999999999999999998877644 444443333333321
Q ss_pred HHHHhHHHHHHHHHHHH
Q 044737 229 PNALRIEEHRRKYDRLR 245 (399)
Q Consensus 229 ~~~~k~~e~~~~ye~l~ 245 (399)
..-.......+||+.++
T Consensus 1019 s~~~d~v~aArYyEe~g 1035 (1416)
T KOG3617|consen 1019 SGGSDLVSAARYYEELG 1035 (1416)
T ss_pred cCchhHHHHHHHHHHcc
Confidence 22233445556666665
No 310
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.89 E-value=1.9 Score=42.45 Aligned_cols=89 Identities=16% Similarity=0.008 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIML-NP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM 193 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l-~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~ 193 (399)
..++--=.++|..|+...-...+.+.|-. |+ ..-+.--.+.++..+|-|.+|.+..++|+++|+.+.-+...++.
T Consensus 138 la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aH 217 (491)
T KOG2610|consen 138 LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAH 217 (491)
T ss_pred hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHH
Confidence 34445556677888888888888887766 44 23334456777888888999999999999998888666666666
Q ss_pred HHHhcCCHHHHHHH
Q 044737 194 AHAMLGHWEEAVHD 207 (399)
Q Consensus 194 a~~~lg~~eeA~~~ 207 (399)
++...+++.++++.
T Consensus 218 Vlem~~r~Keg~eF 231 (491)
T KOG2610|consen 218 VLEMNGRHKEGKEF 231 (491)
T ss_pred HHHhcchhhhHHHH
Confidence 66666666665553
No 311
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.76 E-value=3.7 Score=42.20 Aligned_cols=94 Identities=20% Similarity=0.092 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC--------
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALE-INPDS-------- 184 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~-l~p~~-------- 184 (399)
+.....+|.....-+.|+.|..+|..|.++.- .+.+-.|+|..|+..++-+. +-++++ +.|.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~p~nt~s~ssq~ 442 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAED----LYKALDLIGPLNTNSLSSQR 442 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHH----HHHHHHhcCCCCCCcchHHH
Confidence 44455778888888999999999999999866 46666789999999877443 334443 34442
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737 185 --AKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215 (399)
Q Consensus 185 --~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld 215 (399)
..++|.+|...+..+++.+|...+++.++..
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 3578888999999999999999999999887
No 312
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.57 E-value=3.7 Score=41.13 Aligned_cols=73 Identities=18% Similarity=0.069 Sum_probs=60.6
Q ss_pred HHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCC------------C---HHHHHHHHHH
Q 044737 145 IMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI--------------NPD------------S---AKGYKTRGMA 194 (399)
Q Consensus 145 i~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l--------------~p~------------~---~~a~~~~g~a 194 (399)
|..+| ....+..++.++...|++..|...+++||-. ++. | -.++++....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 46789 8999999999999999999998888887532 111 1 2477788888
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCc
Q 044737 195 HAMLGHWEEAVHDLHVASKIDFD 217 (399)
Q Consensus 195 ~~~lg~~eeA~~~l~~Al~ldp~ 217 (399)
+.+.|.|..|.+.++-.+.+||+
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPD 135 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998
No 313
>PRK14286 chaperone protein DnaJ; Provisional
Probab=89.55 E-value=0.36 Score=48.53 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
.++++++++.+|+++|+++++|+.||.
T Consensus 42 ~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 68 (372)
T PRK14286 42 ESEEKFKEATEAYEILRDPKKRQAYDQ 68 (372)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 356789999999999999999999995
No 314
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.11 E-value=1.2 Score=28.88 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH--HHHHHhhCCcH
Q 044737 186 KGYKTRGMAHAMLGHWEEAVHD--LHVASKIDFDE 218 (399)
Q Consensus 186 ~a~~~~g~a~~~lg~~eeA~~~--l~~Al~ldp~~ 218 (399)
+.|+-+|..+...|++++|++. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4566667777777777777777 44666666643
No 315
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.03 E-value=7.1 Score=34.91 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDF 216 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp 216 (399)
..+|..+|.-|++.|+++.|++.|.++....-.. ...++++-.+....++|..+...+.+|-.+--
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999987754322 45778888889999999999999998876643
No 316
>PRK14281 chaperone protein DnaJ; Provisional
Probab=88.96 E-value=0.86 Score=46.24 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
...++++++.+|++++.++.+|..||.
T Consensus 41 ~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 67 (397)
T PRK14281 41 EAEEHFKEVNEAYEVLSNDDKRRRYDQ 67 (397)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 345789999999999999999999995
No 317
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=88.87 E-value=3.1 Score=40.89 Aligned_cols=86 Identities=20% Similarity=0.069 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044737 134 LDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEI--NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVA 211 (399)
Q Consensus 134 ~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l--~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~A 211 (399)
|..-..+|.-...+.|+...-.||+.+..+.--+..++...+..... -..+..+|-.+|..+.++|+.++|...|++|
T Consensus 312 W~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrA 391 (415)
T COG4941 312 WPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRA 391 (415)
T ss_pred hHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHH
Confidence 44444445544455556667789999998888888888887766554 2356677888999999999999999999999
Q ss_pred HhhCCcHH
Q 044737 212 SKIDFDEE 219 (399)
Q Consensus 212 l~ldp~~~ 219 (399)
+.+..+..
T Consensus 392 i~La~~~a 399 (415)
T COG4941 392 IALARNAA 399 (415)
T ss_pred HHhcCChH
Confidence 99998874
No 318
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.79 E-value=1.5 Score=41.40 Aligned_cols=61 Identities=15% Similarity=-0.004 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737 137 AIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM 197 (399)
Q Consensus 137 Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~ 197 (399)
|+.+|.+|+.+.| +...|+.+|..+...+++=.|+-+|-+++-..-.++.|..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7889999999999 999999999999999999999999999998877778888888888777
No 319
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=88.40 E-value=16 Score=38.54 Aligned_cols=91 Identities=16% Similarity=0.156 Sum_probs=72.9
Q ss_pred HHcCCHHH-HHHHHHHHHHhCC-CHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 044737 129 ISEGKLDE-AIELSTEAIMLNP-SAIMYAT--RASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEA 204 (399)
Q Consensus 129 ~~~g~~~~-Ai~~y~~Ai~l~P-~a~~~~n--ra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA 204 (399)
+..+..+. |+..|...+.+++ +..++.. |+..+..++....++-....++..||+++.++.+++.+....+....+
T Consensus 41 l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~ 120 (620)
T COG3914 41 LNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA 120 (620)
T ss_pred hcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence 44444444 7888888888888 6655333 588888899998889899999999999999999999999988887777
Q ss_pred HHHHHH-HHhhCCcHH
Q 044737 205 VHDLHV-ASKIDFDEE 219 (399)
Q Consensus 205 ~~~l~~-Al~ldp~~~ 219 (399)
+..+.. +..+.|++.
T Consensus 121 ~~~~~~~a~~~~~~~~ 136 (620)
T COG3914 121 LADISEIAEWLSPDNA 136 (620)
T ss_pred HHHHHHHHHhcCcchH
Confidence 776655 888899884
No 320
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=88.23 E-value=0.98 Score=43.85 Aligned_cols=80 Identities=9% Similarity=-0.054 Sum_probs=68.0
Q ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737 140 LSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT-RGMAHAMLGHWEEAVHDLHVASKIDFD 217 (399)
Q Consensus 140 ~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~-~g~a~~~lg~~eeA~~~l~~Al~ldp~ 217 (399)
.|.++-...| +..+|...+..-.+.+.|.+--..|.+++..+|.++..|.. .+.-+...++++.|...+.++++++|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3445555567 88899888888888889999999999999999999999977 555677889999999999999999999
Q ss_pred HH
Q 044737 218 EE 219 (399)
Q Consensus 218 ~~ 219 (399)
++
T Consensus 175 ~p 176 (435)
T COG5191 175 SP 176 (435)
T ss_pred Cc
Confidence 84
No 321
>PRK14285 chaperone protein DnaJ; Provisional
Probab=88.04 E-value=0.47 Score=47.59 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
.++++++++.+|++++.++++|..||.
T Consensus 41 ~a~~~f~~i~~Ay~vL~d~~kr~~yd~ 67 (365)
T PRK14285 41 EAESIFKEATEAYEVLIDDNKRAQYDR 67 (365)
T ss_pred HHHHHHHHHHHHHHHHcCcchhHHHHh
Confidence 356789999999999999999999996
No 322
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.82 E-value=4.7 Score=41.49 Aligned_cols=93 Identities=13% Similarity=0.197 Sum_probs=73.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 044737 125 AMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEE 203 (399)
Q Consensus 125 g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~ee 203 (399)
-......|+.-.|-+....+++..| .......++..+-.+|.|+.|+.++.-+=.+-..-.++..-+-..+..+++|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 3446778999999999999999999 888888889999999999999988766555545555666667778889999999
Q ss_pred HHHHHHHHHhhCCc
Q 044737 204 AVHDLHVASKIDFD 217 (399)
Q Consensus 204 A~~~l~~Al~ldp~ 217 (399)
|.....-.+.-.-+
T Consensus 376 a~s~a~~~l~~eie 389 (831)
T PRK15180 376 ALSTAEMMLSNEIE 389 (831)
T ss_pred HHHHHHHHhccccC
Confidence 98877766654433
No 323
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.68 E-value=6.6 Score=39.56 Aligned_cols=91 Identities=19% Similarity=0.158 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----CHHHH
Q 044737 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK--PNAAIRDATAALEINPDSAKGYKTRGMAHAMLG----HWEEA 204 (399)
Q Consensus 132 g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~--~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg----~~eeA 204 (399)
.-+++-+.....+|+.+| +..+|+-|..++.+... |..=++.|++++++||.+-.+|-.|-.+..... .+.+-
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E 168 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE 168 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence 356777888999999999 99999999999987764 688899999999999999888866655544322 36677
Q ss_pred HHHHHHHHhhCCcH-HHHH
Q 044737 205 VHDLHVASKIDFDE-EIAA 222 (399)
Q Consensus 205 ~~~l~~Al~ldp~~-~~~~ 222 (399)
+....+++.-++.| .++.
T Consensus 169 l~ftt~~I~~nfSNYsaWh 187 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYSAWH 187 (421)
T ss_pred HHHHHHHHhccchhhhHHH
Confidence 78888888888887 4443
No 324
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=87.65 E-value=19 Score=34.32 Aligned_cols=95 Identities=13% Similarity=-0.001 Sum_probs=63.5
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC-C-HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHH
Q 044737 120 EAKAKAMEAIS----EGKLDEAIELSTEAIMLNP-S-AIMYATRASVYIKM----K---KPNAAIRDATAALEINPDSAK 186 (399)
Q Consensus 120 ~~k~~g~~~~~----~g~~~~Ai~~y~~Ai~l~P-~-a~~~~nra~a~~~l----~---~~~~Ai~d~~~Al~l~p~~~~ 186 (399)
.....|..++. ..++.+|+.+|.+|....- . ..+..+++.+|..- + ....|+..+.+|.... ++.
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~ 188 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPD 188 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHH
Confidence 44456666655 4478888888888877754 4 45566677776553 1 2236777777777765 677
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 044737 187 GYKTRGMAHAM----LGHWEEAVHDLHVASKIDF 216 (399)
Q Consensus 187 a~~~~g~a~~~----lg~~eeA~~~l~~Al~ldp 216 (399)
+.+++|.+|.. ..++.+|+..|.+|.+...
T Consensus 189 a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 189 AQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77788877653 3477888888888877766
No 325
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.64 E-value=2.9 Score=38.70 Aligned_cols=78 Identities=18% Similarity=0.083 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhC--C-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 044737 116 EAAAEAKAKAMEAISEGK-------LDEAIELSTEAIMLN--P-----SAIMYATRASVYIKMKKPNAAIRDATAALEIN 181 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~-------~~~Ai~~y~~Ai~l~--P-----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~ 181 (399)
..|..+...|..+-..++ +..|+..|.+|+... | ...+.+-+|..+.++|++++|++++.++|...
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 455666666776666666 556777777777653 2 37888899999999999999999999999865
Q ss_pred CCCH-HHHHHHHH
Q 044737 182 PDSA-KGYKTRGM 193 (399)
Q Consensus 182 p~~~-~a~~~~g~ 193 (399)
-.+. ..+..+|+
T Consensus 196 ~~s~~~~l~~~AR 208 (214)
T PF09986_consen 196 KASKEPKLKDMAR 208 (214)
T ss_pred CCCCcHHHHHHHH
Confidence 4333 24444443
No 326
>PRK14277 chaperone protein DnaJ; Provisional
Probab=87.47 E-value=0.66 Score=46.89 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
.++++++++.+|+++|.++.+|..||.
T Consensus 43 ~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 69 (386)
T PRK14277 43 EAEQKFKEINEAYEILSDPQKRAQYDQ 69 (386)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 355789999999999999999999996
No 327
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=87.43 E-value=5.6 Score=30.51 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAI 145 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai 145 (399)
..+..+|..+=+.|+|.+|+.+|.+||
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 328
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.15 E-value=3.4 Score=43.82 Aligned_cols=69 Identities=20% Similarity=0.091 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAALEINP------DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p------~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
+.++-|-|.-+++..+|..+++.|...+..-| ++++....++.||..+.+.+.|++.++.|-+.||.+.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence 44555778888999999999999999988655 3478889999999999999999999999999999874
No 329
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.06 E-value=13 Score=38.05 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=39.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044737 161 YIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHV 210 (399)
Q Consensus 161 ~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~ 210 (399)
++..|+|..|.-.+.=..++.| ++.+|..+|.++....+|++|..++..
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4567888888888888888888 888888888888888888888776653
No 330
>PRK14298 chaperone protein DnaJ; Provisional
Probab=86.70 E-value=0.88 Score=45.82 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
.++++++.+.+|+++|.++.+|+.||.
T Consensus 42 ~~~~~f~~i~~Ay~vL~d~~kR~~YD~ 68 (377)
T PRK14298 42 DAEEKFKEISEAYAVLSDAEKRAQYDR 68 (377)
T ss_pred hHHHHHHHHHHHHHHhcchHhhhhhhh
Confidence 345788999999999999999999996
No 331
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.50 E-value=5.1 Score=38.58 Aligned_cols=63 Identities=24% Similarity=0.244 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI 180 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l 180 (399)
+..+...+..+...++++.++.++++-|.++| +-.+|..+-.+|++.|+...|+..|.+.-++
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45667888899999999999999999999999 9999999999999999999999999876654
No 332
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.44 E-value=5.7 Score=40.62 Aligned_cols=59 Identities=19% Similarity=0.098 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATA 176 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~ 176 (399)
.......|.-+|..|+|.+++-......++.|+..+|.-+|.|.+..++|.+|...+..
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 45566788889999999999999999999999999999999999999999999987653
No 333
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=86.32 E-value=1.1 Score=49.02 Aligned_cols=6 Identities=17% Similarity=0.650 Sum_probs=2.4
Q ss_pred CCCCcc
Q 044737 21 SILADP 26 (399)
Q Consensus 21 ~~l~~~ 26 (399)
+++++|
T Consensus 786 em~r~p 791 (1282)
T KOG0921|consen 786 EMFRTP 791 (1282)
T ss_pred hhhcCc
Confidence 344443
No 334
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=86.25 E-value=11 Score=28.72 Aligned_cols=17 Identities=24% Similarity=0.059 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhhCCcHH
Q 044737 203 EAVHDLHVASKIDFDEE 219 (399)
Q Consensus 203 eA~~~l~~Al~ldp~~~ 219 (399)
+|+..|.++++..||+.
T Consensus 31 ~aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 31 KAIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHHHhCCChH
Confidence 44445666677778775
No 335
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=86.14 E-value=0.67 Score=30.77 Aligned_cols=33 Identities=21% Similarity=0.572 Sum_probs=24.4
Q ss_pred chhccCCCHHHHhhcC----CHHHHHHHHHHhh-ChHHHHH
Q 044737 342 DFSKILNDPELMAAFS----DPEVMAALQDVMK-NPANLAQ 377 (399)
Q Consensus 342 ~~~~~~~dpe~~~~~~----dp~~~~~~~~~~~-np~~~~~ 377 (399)
.+..++.||.++++++ ||.++..+ ++ ||+.+..
T Consensus 3 ~~~~~l~~P~~~~~l~~~~~nP~~~~~~---~~~nP~~~~~ 40 (41)
T smart00727 3 EMALRLQNPQVQSLLQDMQQNPDMLAQM---LQENPQLLQL 40 (41)
T ss_pred HHHHHHcCHHHHHHHHHHHHCHHHHHHH---HHhCHHhHhh
Confidence 4556788999999888 99976553 44 9986543
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.05 E-value=5.1 Score=37.20 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=56.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 044737 124 KAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAK 186 (399)
Q Consensus 124 ~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~ 186 (399)
-...+++.+...+||.....-++.+| ++.....+-..|+-.|+|++|+..|+-+-.+.|.+.+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34568889999999999999999999 8888888888888999999999999999999998754
No 337
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=85.99 E-value=2.5 Score=36.41 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMK 165 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~ 165 (399)
.....++..++..|+|..|+.+.+.++..+| +..+..-++.+|.+++
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 4566777777788888888888887777777 7777777777766654
No 338
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.93 E-value=0.97 Score=26.79 Aligned_cols=22 Identities=23% Similarity=0.006 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 044737 187 GYKTRGMAHAMLGHWEEAVHDL 208 (399)
Q Consensus 187 a~~~~g~a~~~lg~~eeA~~~l 208 (399)
+++.+|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555666666666655544
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.12 E-value=6.1 Score=36.13 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhcCCHHHHH
Q 044737 150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPD----SAKGYKTRGMAHAMLGHWEEAV 205 (399)
Q Consensus 150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~----~~~a~~~~g~a~~~lg~~eeA~ 205 (399)
.+.+.+.+|..|. ..+..+|+..+.++|++... ++..+..++.++..+++++.|-
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 7888888888776 46788999999999988643 4788888999999999988874
No 340
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=84.85 E-value=1.8 Score=47.62 Aligned_cols=9 Identities=11% Similarity=0.076 Sum_probs=4.8
Q ss_pred HHHhhcCCC
Q 044737 272 KKEEQSSSS 280 (399)
Q Consensus 272 ~k~~~~d~g 280 (399)
-|.++||+|
T Consensus 1166 PKmaryDnG 1174 (1282)
T KOG0921|consen 1166 PKMARYDNG 1174 (1282)
T ss_pred cccccccCC
Confidence 345556655
No 341
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=84.61 E-value=2.8 Score=31.13 Aligned_cols=32 Identities=44% Similarity=0.481 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIML 147 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l 147 (399)
+.|..+..+|..+=+.|+|++|+.+|++||..
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45666777777777777888887777776654
No 342
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=84.49 E-value=15 Score=36.07 Aligned_cols=81 Identities=11% Similarity=-0.007 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---hcCCHHHHHHHHH
Q 044737 134 LDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA---MLGHWEEAVHDLH 209 (399)
Q Consensus 134 ~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~---~lg~~eeA~~~l~ 209 (399)
.+..+..|.+||+.+| +..++..+-.++.++-..+...+-.++++..+|.+...|..+-.... ..-.+......|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3566888999999999 98888888888888888899999999999999999876655433222 2335777777777
Q ss_pred HHHhh
Q 044737 210 VASKI 214 (399)
Q Consensus 210 ~Al~l 214 (399)
+++..
T Consensus 127 ~~l~~ 131 (321)
T PF08424_consen 127 KCLRA 131 (321)
T ss_pred HHHHH
Confidence 77654
No 343
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=84.27 E-value=9.1 Score=29.00 Aligned_cols=32 Identities=31% Similarity=0.387 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIML 147 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l 147 (399)
..+..+..+|...=..|+|++|+.+|..||..
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556666666666666666666666655543
No 344
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=84.03 E-value=13 Score=31.30 Aligned_cols=102 Identities=20% Similarity=0.164 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHH----HHH
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP----------------SAIMYATRASVYIKMKKPNAAIRDATA----ALE 179 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----------------~a~~~~nra~a~~~l~~~~~Ai~d~~~----Al~ 179 (399)
.+-..|+.+++.+++-.+|-+|++|+.+.- ......|+|.-+...|+.+-.+++++- ++.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999997621 245567899999999999988888764 456
Q ss_pred hCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHH
Q 044737 180 INPDSAKGYKTRGMA-HAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKV 227 (399)
Q Consensus 180 l~p~~~~a~~~~g~a-~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v 227 (399)
+-|..+..-+ .+ ...+|--..|+-+ -++..|+..+++.++.+
T Consensus 83 LiPQCp~~~C---~afi~sLGCCk~ALl~---F~KRHPNP~iA~~vq~i 125 (140)
T PF10952_consen 83 LIPQCPNTEC---EAFIDSLGCCKKALLD---FMKRHPNPEIARLVQHI 125 (140)
T ss_pred hccCCCCcch---HHHHHhhhccHHHHHH---HHHhCCCHHHHHHHHhc
Confidence 6666442111 11 2244554555444 35678888766655543
No 345
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=84.01 E-value=27 Score=35.91 Aligned_cols=86 Identities=14% Similarity=0.095 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHh
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM--AHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVE 228 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~--a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~ 228 (399)
...+..|..+.+.- +-..|+..|..||..+|.-+.-.+..-. +....++----+..|+..+..||...+ .+--.|.
T Consensus 313 vetH~~RV~AmlNd-rrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkAa-qmk~qV~ 390 (615)
T KOG3540|consen 313 VETHEARVEAMLND-RRRDALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKKAA-QMKSQVM 390 (615)
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH-HHHHHHH
Confidence 34455555555432 3478999999999999988753333222 333444555578889999999998642 3333445
Q ss_pred HHHHhHHHHH
Q 044737 229 PNALRIEEHR 238 (399)
Q Consensus 229 ~~~~k~~e~~ 238 (399)
.++.-|+++.
T Consensus 391 thLrvIeeR~ 400 (615)
T KOG3540|consen 391 THLRVIEERI 400 (615)
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 346
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=84.01 E-value=3.9 Score=41.44 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEA-------IMLNP--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~A-------i~l~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~ 190 (399)
.+.-....+.-.|||..|++.+.-. ....| ....|+..|-||+.+++|..|++.+..+|-.--.....+..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~ 203 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQ 203 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 4445666777889999999886421 11223 67888999999999999999999998877532111111111
Q ss_pred HHHHH-HhcCCHHHHHHHHHHHHhhCCc
Q 044737 191 RGMAH-AMLGHWEEAVHDLHVASKIDFD 217 (399)
Q Consensus 191 ~g~a~-~~lg~~eeA~~~l~~Al~ldp~ 217 (399)
+..-+ .-.+..+.....+.-++.+.|.
T Consensus 204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 204 RSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred ccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 11111 2235566677777777888884
No 347
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=84.00 E-value=9.8 Score=43.53 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIML-------NP--SAIMYATRASVYIKMKKPNAAIRDATAALEI------- 180 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l-------~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l------- 180 (399)
.+..++..+..+...+++++|+..-.+|.-+ ++ ....|.+++...+..++...|+..+.+++.+
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence 3456677888899999999999987776643 33 7899999999999999999999999998876
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737 181 -NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215 (399)
Q Consensus 181 -~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld 215 (399)
.|.-+....+++..+..+++++.|+..++.|+++.
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 35556667788888999999999999999999865
No 348
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=83.84 E-value=1.6 Score=42.46 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYAT-RASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~n-ra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~ 190 (399)
..-|..-++-..+.+-|.+--..|.+++..+| ++.+|.- -+.-|.-.++++.|...+.++|++||++++.|+.
T Consensus 107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34566666667777888999999999999999 9998876 3444667889999999999999999999887643
No 349
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.81 E-value=7.8 Score=36.96 Aligned_cols=86 Identities=14% Similarity=0.211 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044737 133 KLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPN-AAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHV 210 (399)
Q Consensus 133 ~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~-~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~ 210 (399)
+..+-++.+++.+.-+| +..+|.-|-...-.++++. .-+..+..+|..+..+-.+|..|--+.+..+.|+.-+.....
T Consensus 93 dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~ 172 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE 172 (318)
T ss_pred HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 46677888999999999 9999988888888889888 889999999999999999999999999999999999999999
Q ss_pred HHhhCCcH
Q 044737 211 ASKIDFDE 218 (399)
Q Consensus 211 Al~ldp~~ 218 (399)
.++.|--|
T Consensus 173 Lle~Di~N 180 (318)
T KOG0530|consen 173 LLEEDIRN 180 (318)
T ss_pred HHHHhhhc
Confidence 99988544
No 350
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=83.66 E-value=25 Score=29.58 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=45.5
Q ss_pred HHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737 152 IMYATRASVY--IKMKKPNAAIRDATAALEINPDS------------AKGYKTRGMAHAMLGHWEEAVHDLHVASKI 214 (399)
Q Consensus 152 ~~~~nra~a~--~~l~~~~~Ai~d~~~Al~l~p~~------------~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l 214 (399)
..|..++.+- +.-+-|++|...|.+|+++.-+- +-+|-.++.++..||+|++++....++|..
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 3455554443 45578999999999999875332 346777889999999999999888888754
No 351
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.46 E-value=33 Score=34.74 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHcCCHH-HHHHHHHHHHHhCC-CHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHhCCCCH
Q 044737 120 EAKAKAMEAISEGKLD-EAIELSTEAIMLNP-SAIMYATRASVYIKM------------KKPNAAIRDATAALEINPDSA 185 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~-~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l------------~~~~~Ai~d~~~Al~l~p~~~ 185 (399)
....+-...-+.+.|+ +++.+=.+.+..|| ...+|+-|=.++... .-+++-+.....||+.+|++-
T Consensus 30 ~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY 109 (421)
T KOG0529|consen 30 SLFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSY 109 (421)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhH
Confidence 3344445555667775 57777777778899 666666554444322 234555667788999999999
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHH
Q 044737 186 KGYKTRGMAHAMLG--HWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNAL 232 (399)
Q Consensus 186 ~a~~~~g~a~~~lg--~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~ 232 (399)
-+|+.|..++.... +|..=++.+.+++++||.| ..+...+-|.....
T Consensus 110 ~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~ 159 (421)
T KOG0529|consen 110 GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAE 159 (421)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHh
Confidence 99999999988665 4788899999999999987 55555555544333
No 352
>PRK10767 chaperone protein DnaJ; Provisional
Probab=82.74 E-value=1.9 Score=43.30 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 044737 254 ERERLRRRAEAQAAYEKAKKEEQSSSS 280 (399)
Q Consensus 254 ~~er~~~~~~A~~~~~~~~k~~~~d~g 280 (399)
++++++++.+|++++.++.+|..||.-
T Consensus 43 a~~~f~~i~~Ay~~L~d~~~r~~yd~~ 69 (371)
T PRK10767 43 AEEKFKEIKEAYEVLSDPQKRAAYDQY 69 (371)
T ss_pred HHHHHHHHHHHHHHhcchhhhhHhhhc
Confidence 557899999999999999999999963
No 353
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.71 E-value=18 Score=31.91 Aligned_cols=74 Identities=19% Similarity=0.154 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHH
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVL 224 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~l 224 (399)
...+..+..+-+..++...+...+...--+.|..+..-..-|..|...|+|.+|+..|+.+..-.|.......|
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL 83 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 34555666677788899998888888888999999999999999999999999999999998888877543333
No 354
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=82.67 E-value=7.8 Score=40.07 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=52.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHH
Q 044737 128 AISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK-PNAAIRDATAALEINPDSAKGYK 189 (399)
Q Consensus 128 ~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~-~~~Ai~d~~~Al~l~p~~~~a~~ 189 (399)
.-+.+.|.+--..|.+++.++| ++.+|.--|.-.+..+. .+.|...+.++|+.+|++++.|.
T Consensus 115 ~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 115 CKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred HHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 3344458888999999999999 99999988887777775 89999999999999999998765
No 355
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.61 E-value=1.7 Score=25.74 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 044737 152 IMYATRASVYIKMKKPNAAIRDAT 175 (399)
Q Consensus 152 ~~~~nra~a~~~l~~~~~Ai~d~~ 175 (399)
.+++++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677777777777777776654
No 356
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=82.58 E-value=13 Score=27.96 Aligned_cols=32 Identities=38% Similarity=0.434 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIML 147 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l 147 (399)
..|..+..+|..+=..|+|++|+.+|..|++.
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455555555555566666666666555443
No 357
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=82.45 E-value=37 Score=33.61 Aligned_cols=89 Identities=22% Similarity=0.103 Sum_probs=59.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------CC
Q 044737 127 EAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI-----------------------NP 182 (399)
Q Consensus 127 ~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l-----------------------~p 182 (399)
.+-+..+..+-|.....|+++|| -+.+|..+|.--. --..+|.+.+.+||+. ..
T Consensus 193 ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRD 270 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRD 270 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcc
Confidence 34566788888999999999999 8888877764321 1123333333333332 12
Q ss_pred CCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737 183 DSAKGY--KTRGMAHAMLGHWEEAVHDLHVASKIDFD 217 (399)
Q Consensus 183 ~~~~a~--~~~g~a~~~lg~~eeA~~~l~~Al~ldp~ 217 (399)
.++..| .|++.|-+++|+..+|++.++...+--|-
T Consensus 271 tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl 307 (556)
T KOG3807|consen 271 TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL 307 (556)
T ss_pred cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH
Confidence 233334 45788899999999999999988776663
No 358
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.42 E-value=57 Score=36.21 Aligned_cols=97 Identities=23% Similarity=0.146 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP----------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS---- 184 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---- 184 (399)
.-....+..+....+|.+|-.+..++-..-+ .+.+..-+|.+.+..++++.|++.++.++..-|..
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~ 495 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS 495 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence 3445677888899999999988887776533 35777788999999999999999999999987754
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737 185 -AKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215 (399)
Q Consensus 185 -~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld 215 (399)
+.++...|.++.-+|++++|......+.++.
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 4688889999999999999999999998874
No 359
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=82.12 E-value=1.3 Score=45.33 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC
Q 044737 256 ERLRRRAEAQAAYEKAKKEEQSSSS 280 (399)
Q Consensus 256 er~~~~~~A~~~~~~~~k~~~~d~g 280 (399)
++++++.+|+++|++++||..||..
T Consensus 65 e~F~~i~~AYevLsD~~kR~~YD~~ 89 (421)
T PTZ00037 65 EKFKEISRAYEVLSDPEKRKIYDEY 89 (421)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhhh
Confidence 6899999999999999999999963
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.01 E-value=5 Score=27.28 Aligned_cols=25 Identities=20% Similarity=0.037 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 044737 189 KTRGMAHAMLGHWEEAVHDLHVASK 213 (399)
Q Consensus 189 ~~~g~a~~~lg~~eeA~~~l~~Al~ 213 (399)
+.+|.+|..+|+++.|...++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4577777788888888777777774
No 361
>PRK14296 chaperone protein DnaJ; Provisional
Probab=81.75 E-value=1.1 Score=45.01 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
.++++|+++.+|+++|++++||..||.
T Consensus 41 ~a~~~F~~i~~AyevLsD~~KR~~YD~ 67 (372)
T PRK14296 41 DAHDKMVEINEAADVLLDKDKRKQYDQ 67 (372)
T ss_pred hHHHHHHHHHHHHHHhcCHHHhhhhhh
Confidence 356799999999999999999999996
No 362
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=81.45 E-value=2.7 Score=42.42 Aligned_cols=56 Identities=25% Similarity=0.187 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044737 123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAAL 178 (399)
Q Consensus 123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al 178 (399)
.....|++.++.+.|+.+..+.|.+|| ...-+.++|.|+..|.+|.+|.+.+--|.
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999 99999999999999999999988776554
No 363
>COG4907 Predicted membrane protein [Function unknown]
Probab=81.33 E-value=3.4 Score=42.01 Aligned_cols=46 Identities=17% Similarity=0.171 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044737 166 KPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVA 211 (399)
Q Consensus 166 ~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~A 211 (399)
.|..=+.++.+.-+..|.+.+.|-..-.--..||--++.++.++++
T Consensus 490 aFKnfLsd~s~lke~~pesI~~W~~ylVYatALGV~dkVvkam~~~ 535 (595)
T COG4907 490 AFKNFLSDYSQLKEAKPESIHLWEQYLVYATALGVSDKVVKAMRKA 535 (595)
T ss_pred HHHHHHHhHHHHhhCCCcceehHhhhhhhhhhhccHHHHHHHHHHh
Confidence 3444455566666666666655544332233455555555555544
No 364
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=81.13 E-value=3 Score=39.66 Aligned_cols=108 Identities=15% Similarity=0.039 Sum_probs=72.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhCC---CC---HHHH
Q 044737 126 MEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIK----------MKKPNAAIRDATAALEINP---DS---AKGY 188 (399)
Q Consensus 126 ~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~----------l~~~~~Ai~d~~~Al~l~p---~~---~~a~ 188 (399)
.+++..++.-.|+.+|.+.+.-.| +..+....+.|.-+ .-....|.+.++.||-+-- +. .-.-
T Consensus 3 ~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~ 82 (368)
T COG5091 3 KALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVN 82 (368)
T ss_pred cchhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeeh
Confidence 345666777788888888887777 54433333333222 2345678888888887632 11 2245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHh
Q 044737 189 KTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALR 233 (399)
Q Consensus 189 ~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k 233 (399)
++++.+|+.+.+|+-|..+|.+|+.+--++....|--++...+.+
T Consensus 83 ~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~ 127 (368)
T COG5091 83 FRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNK 127 (368)
T ss_pred hhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhH
Confidence 788999999999999999999999996665544444444444443
No 365
>PRK14287 chaperone protein DnaJ; Provisional
Probab=81.11 E-value=1.8 Score=43.50 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
.++++++++.+|+++++++++|+.||.
T Consensus 41 ~~~~~f~~i~~Ay~~L~d~~kR~~YD~ 67 (371)
T PRK14287 41 DAEDKFKEVKEAYDTLSDPQKKAHYDQ 67 (371)
T ss_pred hHHHHHHHHHHHHHHhCcHhHHHHHHh
Confidence 355789999999999999999999996
No 366
>PRK14278 chaperone protein DnaJ; Provisional
Probab=80.86 E-value=1.8 Score=43.65 Aligned_cols=28 Identities=11% Similarity=0.130 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSSS 280 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~g 280 (399)
.+.++++.+.+|+++|.++++|..||..
T Consensus 40 ~a~~~f~~i~~Ay~vL~d~~~r~~YD~~ 67 (378)
T PRK14278 40 EAQEKFKEISVAYEVLSDPEKRRIVDLG 67 (378)
T ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhcc
Confidence 3567899999999999999999999964
No 367
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=80.48 E-value=3.3 Score=31.66 Aligned_cols=32 Identities=41% Similarity=0.443 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIML 147 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l 147 (399)
..+..+..+|...=..|+|++|+.+|..||++
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 45555666666666666777777777666655
No 368
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=80.47 E-value=16 Score=35.34 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHH-HHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 170 AIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEI-AAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 170 Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~-~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
+.--+-+.|--+.++..+|.-.|.++..+++....+.++-+-.=|||=... ...++.+..++++++.+|-.|.-+.+
T Consensus 91 ~mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRldyD~kkk 168 (366)
T KOG1118|consen 91 VMIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLDYDYKKK 168 (366)
T ss_pred HHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 344455678888999999999999999999999999998888888875433 55778888888888887776654443
No 369
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=80.41 E-value=29 Score=28.63 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=48.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCcH
Q 044737 157 RASVYIKMKKPNAAIRDATAALEINPDSAK---GYKTRGMAHAMLG-----------HWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 157 ra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~---a~~~~g~a~~~lg-----------~~eeA~~~l~~Al~ldp~~ 218 (399)
+|..++..|++-+|++..+..|..++++.. .+..-|.++..+. .+-.|+++|.++..+.|+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence 577889999999999999999999988774 3444566665443 2345888899999998887
No 370
>PRK14288 chaperone protein DnaJ; Provisional
Probab=80.37 E-value=1.3 Score=44.41 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
+++++++.+.+|+++|.+++||..||.
T Consensus 41 ~a~~~f~~i~~AYevLsd~~kR~~YD~ 67 (369)
T PRK14288 41 EAEEKFKLINEAYGVLSDEKKRALYDR 67 (369)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 356789999999999999999999996
No 371
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=80.35 E-value=4.2 Score=31.18 Aligned_cols=31 Identities=29% Similarity=0.270 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIML 147 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l 147 (399)
.|..+..+|..+=+.|+|.+|+.+|.+||.+
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556666777777777777777777776655
No 372
>PRK14279 chaperone protein DnaJ; Provisional
Probab=80.28 E-value=1.2 Score=45.24 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
.+.++++++.+|+++|.+++||+.||.
T Consensus 47 ~a~~~f~~i~~Ay~vLsD~~KR~~YD~ 73 (392)
T PRK14279 47 AAEERFKAVSEAHDVLSDPAKRKEYDE 73 (392)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 356789999999999999999999996
No 373
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=80.23 E-value=17 Score=37.18 Aligned_cols=106 Identities=18% Similarity=0.181 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C----------HHHHHHHHHHHH-------HcCCH-HHHHHHH
Q 044737 114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S----------AIMYATRASVYI-------KMKKP-NAAIRDA 174 (399)
Q Consensus 114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~----------a~~~~nra~a~~-------~l~~~-~~Ai~d~ 174 (399)
.+.......+.|..++..|+|.+|+..|...|..-| . ..-+..++.=|+ ..+.. ...+++-
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~ 279 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ 279 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence 345556677789999999999999999999998744 1 111111221121 11111 1111122
Q ss_pred HHHHH---------hCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 175 TAALE---------INPDSAKGYKTRGMA-HAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 175 ~~Al~---------l~p~~~~a~~~~g~a-~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
.+.++ |.|.+...-++.|.. .+++++|..|....++.|++.|...
T Consensus 280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 22222 233333223333322 3477888888888888888887653
No 374
>PRK14300 chaperone protein DnaJ; Provisional
Probab=79.89 E-value=1.4 Score=44.20 Aligned_cols=26 Identities=8% Similarity=0.158 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 254 ERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 254 ~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
.+++++++.+|++++.++.+|..||.
T Consensus 41 ~~~~f~~i~~Ay~~L~d~~~r~~yD~ 66 (372)
T PRK14300 41 AEKKFKEINAAYDVLKDEQKRAAYDR 66 (372)
T ss_pred HHHHHHHHHHHHHHhhhHhHhhHHHh
Confidence 45688999999999999999999996
No 375
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.66 E-value=16 Score=34.08 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=55.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 159 SVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 159 ~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
..+++-+...+||.+...-++-+|.+......+-..|+-.|+|++|..-++.+-.+.|+..
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3567788899999999999999999998888888899999999999999999999999873
No 376
>PRK14297 chaperone protein DnaJ; Provisional
Probab=79.53 E-value=2.6 Score=42.55 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSSS 280 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~g 280 (399)
.++++++++.+|++++.++++|+.||.-
T Consensus 42 ~a~~~f~~i~~Ay~vL~d~~~r~~yD~~ 69 (380)
T PRK14297 42 EAEEKFKEINEAYQVLSDPQKKAQYDQF 69 (380)
T ss_pred HHHHHHHHHHHHHHHhcCHhhhCchhhc
Confidence 3556899999999999999999999963
No 377
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=79.49 E-value=6.2 Score=34.04 Aligned_cols=50 Identities=16% Similarity=0.039 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 044737 152 IMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHW 201 (399)
Q Consensus 152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~ 201 (399)
.....++...+..|+|.-|+..++.++..+|++..+...++.+|..++.-
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 33445666667778888888888888888888887777777777666544
No 378
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=79.02 E-value=3.2 Score=42.11 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044737 155 ATRASVYIKMKKPNAAIRDATAALEIN---------PDSAKGYKTRGMAHAMLGHWEEAVHDLHVASK 213 (399)
Q Consensus 155 ~nra~a~~~l~~~~~Ai~d~~~Al~l~---------p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ 213 (399)
..+..++.-+|+|..|++..+- |.++ +.++..||..|.||..+++|.+|++.|...|-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677889999999997653 2222 34567899999999999999999999998764
No 379
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=78.96 E-value=27 Score=26.73 Aligned_cols=18 Identities=28% Similarity=0.084 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhhCCcHHH
Q 044737 203 EAVHDLHVASKIDFDEEI 220 (399)
Q Consensus 203 eA~~~l~~Al~ldp~~~~ 220 (399)
+|+..|..+++..|+...
T Consensus 31 ~aie~l~~~lk~e~d~~~ 48 (77)
T cd02683 31 EGIDLLMQVLKGTKDEAK 48 (77)
T ss_pred HHHHHHHHHHhhCCCHHH
Confidence 344445566667777643
No 380
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=78.71 E-value=27 Score=35.32 Aligned_cols=70 Identities=14% Similarity=0.052 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 150 SAIMYATRASVYIKMKKPNAAIRDATAALE----INPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~----l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
.+.+.+.+-.+|+.-+.|+.|-....++.- .|..++..+|.+|.+..-..+|..|.+++.+|+...|.+.
T Consensus 208 qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 208 QAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 467777788888888888888777666541 2335688899999999999999999999999999999764
No 381
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=78.62 E-value=2.9 Score=30.39 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=14.7
Q ss_pred cCCHHHHHHHHHHhhChHHHHHhh-----cCCcHHHHHH
Q 044737 356 FSDPEVMAALQDVMKNPANLAQHQ-----ANPKVAPIIA 389 (399)
Q Consensus 356 ~~dp~~~~~~~~~~~np~~~~~~~-----~~p~~~~~~~ 389 (399)
+++|.|..+=+-|.+||..+..++ +||.+..+|+
T Consensus 5 r~~Pqf~~lR~~vq~NP~lL~~lLqql~~~nP~l~q~I~ 43 (59)
T PF09280_consen 5 RNNPQFQQLRQLVQQNPQLLPPLLQQLGQSNPQLLQLIQ 43 (59)
T ss_dssp TTSHHHHHHHHHHHC-GGGHHHHHHHHHCCSHHHHHHHH
T ss_pred HcChHHHHHHHHHHHCHHHHHHHHHHHhccCHHHHHHHH
Confidence 444444444444455554333222 2555555543
No 382
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=78.32 E-value=23 Score=33.90 Aligned_cols=90 Identities=21% Similarity=0.119 Sum_probs=64.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhC----C-----CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----C---CCC------
Q 044737 128 AISEGKLDEAIELSTEAIMLN----P-----SAIMYATRASVYIKMK-KPNAAIRDATAALEI----N---PDS------ 184 (399)
Q Consensus 128 ~~~~g~~~~Ai~~y~~Ai~l~----P-----~a~~~~nra~a~~~l~-~~~~Ai~d~~~Al~l----~---p~~------ 184 (399)
+.++|+++.|...|.++-.+. | -+..++|.|...++.+ +|+.|+.++++|+++ . ...
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 456788999999988877654 3 3678899999999999 999999999999887 2 111
Q ss_pred -HHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhCCc
Q 044737 185 -AKGYKTRGMAHAMLGHWEE---AVHDLHVASKIDFD 217 (399)
Q Consensus 185 -~~a~~~~g~a~~~lg~~ee---A~~~l~~Al~ldp~ 217 (399)
...+..++.+|...+.++. |...++.+-.-.|+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~ 119 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN 119 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC
Confidence 3456677888888777654 33344444333344
No 383
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.29 E-value=7.4 Score=37.68 Aligned_cols=57 Identities=23% Similarity=0.215 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044737 121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAA 177 (399)
Q Consensus 121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~A 177 (399)
+...+..|...|.|.+|+.+.++++.++| +-..|.-+-..+..+|+--.|+..|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 44667888999999999999999999999 9999999999999999977777776653
No 384
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.25 E-value=24 Score=37.41 Aligned_cols=91 Identities=12% Similarity=-0.020 Sum_probs=71.3
Q ss_pred HHHHHHHHc----C-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737 123 AKAMEAISE----G-KLDEAIELSTEAIMLNPSAIMYATRASVYIKMK---KPNAAIRDATAALEINPDSAKGYKTRGMA 194 (399)
Q Consensus 123 ~~g~~~~~~----g-~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~---~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a 194 (399)
..|..|++. . ++..|+.+|.+|-.+.. ..+.+++|.+|..-. ++..|..+|..|... .++.++++++.+
T Consensus 293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~ 369 (552)
T KOG1550|consen 293 GLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALC 369 (552)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHH
Confidence 456666663 3 78899999999988765 445567788877654 578999999988876 478999999988
Q ss_pred HHh----cCCHHHHHHHHHHHHhhCC
Q 044737 195 HAM----LGHWEEAVHDLHVASKIDF 216 (399)
Q Consensus 195 ~~~----lg~~eeA~~~l~~Al~ldp 216 (399)
|.. ..+...|..+|.++.+...
T Consensus 370 y~~G~gv~r~~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 370 YELGLGVERNLELAFAYYKKAAEKGN 395 (552)
T ss_pred HHhCCCcCCCHHHHHHHHHHHHHccC
Confidence 874 3588999999999999883
No 385
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=77.63 E-value=45 Score=33.59 Aligned_cols=63 Identities=13% Similarity=0.025 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC--CHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHh
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIML-NP--SAIMYATRASVY--IKMKKPNAAIRDATAALEI 180 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l-~P--~a~~~~nra~a~--~~l~~~~~Ai~d~~~Al~l 180 (399)
+.....++..+|+.++|..|...|...+.. .+ ....|..++.+| .-.-+|.+|.+.+++.+..
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456778889999999999999999999986 44 335666666665 4567889999999988765
No 386
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=77.54 E-value=8.4 Score=24.93 Aligned_cols=29 Identities=14% Similarity=-0.011 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCHHHHHHH--HHHHHHhCC
Q 044737 154 YATRASVYIKMKKPNAAIRD--ATAALEINP 182 (399)
Q Consensus 154 ~~nra~a~~~l~~~~~Ai~d--~~~Al~l~p 182 (399)
+..+|.++...|+|++|+.. +.-+..+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 34445555555555555555 224444443
No 387
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=77.46 E-value=8.7 Score=29.25 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737 115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIML 147 (399)
Q Consensus 115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l 147 (399)
+..|..+..+|...=..|+|++|+.+|..+|..
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456778888888888999999999999888875
No 388
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=77.17 E-value=2.4 Score=43.52 Aligned_cols=41 Identities=24% Similarity=0.582 Sum_probs=24.9
Q ss_pred hhccCCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCCcHH
Q 044737 343 FSKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVA 385 (399)
Q Consensus 343 ~~~~~~dpe~~~~~~dp~~~~~~~~~~~np~~~~~~~~~p~~~ 385 (399)
+..+|.||-|..+|+||++|.-+ |+.||++..-+..||.|.
T Consensus 159 ~~~~m~nP~vq~ll~Npd~mrq~--I~anPqmq~lm~~npei~ 199 (493)
T KOG0010|consen 159 LRQMMENPIVQSLLNNPDLMRQL--IMANPQMQDLMQRNPEIG 199 (493)
T ss_pred HHHhhhChHHHHHhcChHHHHHH--HhcCHHHHHHHhhCCcch
Confidence 35666677777777777766532 566666555555566553
No 389
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=76.98 E-value=3.5 Score=42.09 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 248 REERKVERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 248 ~e~kk~~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
.+.|+.+++.|.++.+|++++.++++|+.||+
T Consensus 45 pd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~ 76 (546)
T KOG0718|consen 45 PDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDN 76 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 56788899999999999999999999999993
No 390
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=76.74 E-value=13 Score=28.00 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737 115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIML 147 (399)
Q Consensus 115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l 147 (399)
...+..+...|..+=..|+|++|+.+|..|+..
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356677788888888889999999999888865
No 391
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=76.74 E-value=10 Score=35.63 Aligned_cols=58 Identities=17% Similarity=0.098 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CcHHHHHHHHHH
Q 044737 170 AIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID-FDEEIAAVLKKV 227 (399)
Q Consensus 170 Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld-p~~~~~~~lk~v 227 (399)
|+.+|.+|+.+.|++...|..+|.++...++.=.|+-.|-+++-.. |-..+...|..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~l 59 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKL 59 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999998665 333333444443
No 392
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.15 E-value=23 Score=27.36 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=39.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHhcCCHHHHHHHHH
Q 044737 157 RASVYIKMKKPNAAIRDATAALEINPDSAKGYKTR---GMAHAMLGHWEEAVHDLH 209 (399)
Q Consensus 157 ra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~---g~a~~~lg~~eeA~~~l~ 209 (399)
.|.-++..++..+|+....+||+..++....+..+ ..||...|+|+++++...
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444677888999999999999888877655554 456778888888776543
No 393
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=75.24 E-value=12 Score=35.26 Aligned_cols=61 Identities=11% Similarity=-0.002 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAALEINP--DS----AKGYKTRGMAHAMLGHWEEAVHDLHVA 211 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p--~~----~~a~~~~g~a~~~lg~~eeA~~~l~~A 211 (399)
..+...+|.-|+.+|+|+.|+..++.++...- .+ ...+..+..|+..+|+.+..+...-+.
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556677778888888888888877755422 12 346666777778888877777665443
No 394
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=74.87 E-value=60 Score=28.93 Aligned_cols=96 Identities=18% Similarity=0.098 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Q 044737 123 AKAMEAISEGKLDEAIELSTEAIMLNP---SAIMYATRASVYIKMKKPNAAIRDATAALEI--------NPDSAKGYKTR 191 (399)
Q Consensus 123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l--------~p~~~~a~~~~ 191 (399)
+.-..-.+.+.|.+|..++++.|.... ....|.+++.|.+-+.+-.--+++-++.++. .|-|+-|-...
T Consensus 98 eqva~kis~~~~~eaK~LlnkIi~nk~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~k 177 (220)
T PF10858_consen 98 EQVAIKISEKKYSEAKQLLNKIIENKEYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIK 177 (220)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHH
Confidence 344445778999999999999998866 5789999999999887766556665555553 35566666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 192 GMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 192 g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
+..-...+...+|.+.++..+.-+...
T Consensus 178 aiwdik~nm~~~aeknL~~l~~Snn~S 204 (220)
T PF10858_consen 178 AIWDIKNNMKNQAEKNLKNLLASNNVS 204 (220)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhcchH
Confidence 777788899999999999888876654
No 395
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=74.49 E-value=4.5 Score=40.33 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 254 ERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 254 ~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
.+++++++.+|++++.++.+|..||.
T Consensus 38 ~~~~f~~i~~Ay~vL~d~~~R~~yd~ 63 (354)
T TIGR02349 38 AEEKFKEINEAYEVLSDPEKRAQYDQ 63 (354)
T ss_pred HHHHHHHHHHHHHHhhChHHHHhhhh
Confidence 45688999999999999999999986
No 396
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.43 E-value=7.8 Score=39.96 Aligned_cols=96 Identities=8% Similarity=0.032 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 044737 123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHW 201 (399)
Q Consensus 123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~ 201 (399)
.++...-..|+|+.|...+.-+-.+-- .......|-....++++|+.|+......|.-.-..+.....-+..-..++-+
T Consensus 328 l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~ 407 (831)
T PRK15180 328 LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLF 407 (831)
T ss_pred HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHH
Confidence 456666777889998888776555544 3333444555667899999999999888877667777666666667788999
Q ss_pred HHHHHHHHHHHhhCCcH
Q 044737 202 EEAVHDLHVASKIDFDE 218 (399)
Q Consensus 202 eeA~~~l~~Al~ldp~~ 218 (399)
++|...+++.+.++|..
T Consensus 408 d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 408 DKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHHHhccCChh
Confidence 99999999999998754
No 397
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.05 E-value=38 Score=35.95 Aligned_cols=95 Identities=16% Similarity=0.054 Sum_probs=70.9
Q ss_pred HHHHHHHHH-----cCCHHHHHHHHHHHHHh----CC--CHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCH
Q 044737 122 KAKAMEAIS-----EGKLDEAIELSTEAIML----NP--SAIMYATRASVYIKMK-----KPNAAIRDATAALEINPDSA 185 (399)
Q Consensus 122 k~~g~~~~~-----~g~~~~Ai~~y~~Ai~l----~P--~a~~~~nra~a~~~l~-----~~~~Ai~d~~~Al~l~p~~~ 185 (399)
...|..++. ..+.+.|+.+|..+... .- ...+.+.+|.+|.+-. ++..|+..+.+|-.+. ++
T Consensus 248 ~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~ 325 (552)
T KOG1550|consen 248 YALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NP 325 (552)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--Cc
Confidence 344555443 36899999999999871 11 4556778888888743 6788999999998875 67
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCcH
Q 044737 186 KGYKTRGMAHAMLG---HWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 186 ~a~~~~g~a~~~lg---~~eeA~~~l~~Al~ldp~~ 218 (399)
.+.+++|.+|..-. ++..|..+|..|.+.-...
T Consensus 326 ~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~ 361 (552)
T KOG1550|consen 326 DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL 361 (552)
T ss_pred hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH
Confidence 78889998887655 6789999999988665443
No 398
>COG4499 Predicted membrane protein [Function unknown]
Probab=73.86 E-value=63 Score=32.48 Aligned_cols=53 Identities=9% Similarity=0.155 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044737 150 SAIMYATRASVYIKMKKPNAAIR-DATAALEI--NPDSAKGYKTRGMAHAMLGHWEEAVHD 207 (399)
Q Consensus 150 ~a~~~~nra~a~~~l~~~~~Ai~-d~~~Al~l--~p~~~~a~~~~g~a~~~lg~~eeA~~~ 207 (399)
--.+.+-+|..|.........-+ .....|.+ ++++-..| ++..+|++++|+..
T Consensus 280 Pksv~Y~LA~SYV~~e~L~~~kkeNi~NnislkSd~~~llYW-----i~~GRGe~~eAinI 335 (434)
T COG4499 280 PKSVQYILAVSYVNLEDLTTTKKENILNNISLKSDDNYLLYW-----IYSGRGEFKEAINI 335 (434)
T ss_pred cHHHHHHHHHHHhhccccchHHHHHHhhccccccchhHHHHH-----HHhcCccHHHHhhH
Confidence 46778889999998876544322 12222333 33333333 66778999998864
No 399
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.82 E-value=93 Score=31.96 Aligned_cols=97 Identities=20% Similarity=0.138 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------C-CHHHHHHHHHHHHHcCCHH------HHHHHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLN-----------P-SAIMYATRASVYIKMKKPN------AAIRDATAALE 179 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~-----------P-~a~~~~nra~a~~~l~~~~------~Ai~d~~~Al~ 179 (399)
+.-+..+|.++++...|.+|+.++-.|=+.. . .+.+-.-+.+||+.+.+.. .-+..|.+.+.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 5678899999999999999998887766542 1 3455556778898887632 22333444433
Q ss_pred h------------C-CCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737 180 I------------N-PDSA------KGYKTRGMAHAMLGHWEEAVHDLHVASKI 214 (399)
Q Consensus 180 l------------~-p~~~------~a~~~~g~a~~~lg~~eeA~~~l~~Al~l 214 (399)
. . +..+ ..++.-|...+..|+-++|..+|+.|...
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 2 1 2222 23444588899999999999999988653
No 400
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=73.79 E-value=97 Score=33.23 Aligned_cols=100 Identities=17% Similarity=0.078 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Q 044737 115 REAAAEAKAKAMEAI-SEGKLDEAIELSTEAIMLNP---S----AIMYATRASVYIKMKKPNAAIRDATAALEINPD--- 183 (399)
Q Consensus 115 ~~~a~~~k~~g~~~~-~~g~~~~Ai~~y~~Ai~l~P---~----a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~--- 183 (399)
..++......|..++ ...+++.|..++++++.+.- . ..+.+-++.+|.+.+... |+..++++|+.--.
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~ 134 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence 356777888888888 67899999999999998874 1 344456677777776666 99999999987654
Q ss_pred -CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhhC
Q 044737 184 -SAKGYKTRGMA--HAMLGHWEEAVHDLHVASKID 215 (399)
Q Consensus 184 -~~~a~~~~g~a--~~~lg~~eeA~~~l~~Al~ld 215 (399)
.....+++-.+ +...+++..|+..++....+.
T Consensus 135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 23333333322 222379999999999988876
No 401
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=73.70 E-value=1.1e+02 Score=32.62 Aligned_cols=121 Identities=12% Similarity=-0.034 Sum_probs=84.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737 126 MEAISEGKLDEAIELSTEAIML-----NP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 126 ~~~~~~g~~~~Ai~~y~~Ai~l-----~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~ 196 (399)
+.+-........+..|...|+. .| ...-|.....-...+|+++...-.+++++--...+...|.+.+....
T Consensus 263 ~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~ 342 (577)
T KOG1258|consen 263 KVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWME 342 (577)
T ss_pred HHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH
Confidence 3344445666777778888864 44 23444444555678899999999999999988899999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCC-cHHH-HHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 197 MLGHWEEAVHDLHVASKIDF-DEEI-AAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 197 ~lg~~eeA~~~l~~Al~ldp-~~~~-~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
..|+.+-|-..+..++++.- .... .-.....++....+..++..|.++..
T Consensus 343 ~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 343 SSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIES 394 (577)
T ss_pred HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 99999999999999988764 3333 22333334444455555555555543
No 402
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=73.22 E-value=83 Score=34.28 Aligned_cols=80 Identities=8% Similarity=-0.007 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML 198 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l 198 (399)
.++++.|..++....|++|.+.|...-.. .+...||+.+..|.+ ++.....-|++.+.+-.+|..+...
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~sv 865 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDT-------ENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSV 865 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccch-------HhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhh
Confidence 46777888888888888888888764433 456677777777665 3333334466655555666666666
Q ss_pred CCHHHHHHHHH
Q 044737 199 GHWEEAVHDLH 209 (399)
Q Consensus 199 g~~eeA~~~l~ 209 (399)
|--++|+..|-
T Consensus 866 GMC~qAV~a~L 876 (1189)
T KOG2041|consen 866 GMCDQAVEAYL 876 (1189)
T ss_pred chHHHHHHHHH
Confidence 66555555543
No 403
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.13 E-value=15 Score=33.69 Aligned_cols=52 Identities=23% Similarity=0.212 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCCHHHHHH
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-----SAIMYATRASVYIKMKKPNAAIR 172 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-----~a~~~~nra~a~~~l~~~~~Ai~ 172 (399)
-....|. +|...+.++|+.+|.+++++.. ++.++..++.+|.++++++.|.-
T Consensus 143 lq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 143 LQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 3344444 4457799999999999999854 79999999999999999998753
No 404
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=72.98 E-value=35 Score=32.06 Aligned_cols=55 Identities=13% Similarity=0.025 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044737 123 AKAMEAISEGKLDEAIELSTEAIMLNP-------SAIMYATRASVYIKMKKPNAAIRDATAA 177 (399)
Q Consensus 123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~A 177 (399)
..|..|+..|+|++|+.+|..+....- ...+...+..|+..+++....+..|-+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 566666666666666666666654311 3455555666666666666665555433
No 405
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.73 E-value=41 Score=34.94 Aligned_cols=94 Identities=13% Similarity=0.011 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC---C-----CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCH
Q 044737 116 EAAAEAKAKAMEAI-SEGKLDEAIELSTEAIMLN---P-----SAIMYATRASVYIKMK-KPNAAIRDATAALEINPDSA 185 (399)
Q Consensus 116 ~~a~~~k~~g~~~~-~~g~~~~Ai~~y~~Ai~l~---P-----~a~~~~nra~a~~~l~-~~~~Ai~d~~~Al~l~p~~~ 185 (399)
-+|....+.|..++ -..+++.|..++++|..+- | ...+++-++.+|.... .+..|...+.+||++....+
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP 123 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence 34555566666554 5688999999999998773 2 2567788999998888 78888889999999876654
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHH
Q 044737 186 ----KGYKTRGMAHAMLGHWEEAVHDLH 209 (399)
Q Consensus 186 ----~a~~~~g~a~~~lg~~eeA~~~l~ 209 (399)
+..+.++..+.-..++..|++.+.
T Consensus 124 ~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 124 YWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred hhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 455667888888899999988743
No 406
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=72.69 E-value=44 Score=31.71 Aligned_cols=80 Identities=21% Similarity=0.170 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-----------
Q 044737 135 DEAIELSTEAIMLNPSAIMYATRASVYIK----MKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG----------- 199 (399)
Q Consensus 135 ~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~----l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg----------- 199 (399)
..|+..|.+|-... +..+..++|.+|.. -.++.+|+.+|.+|.+... ..+.++++ ++...|
T Consensus 172 ~~A~~~~~~aa~~~-~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~ 247 (292)
T COG0790 172 KKALYLYRKAAELG-NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTA 247 (292)
T ss_pred HhHHHHHHHHHHhc-CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccc
Confidence 36777777766555 56677788888865 3488999999999999876 88888888 666555
Q ss_pred ----CHHHHHHHHHHHHhhCCcH
Q 044737 200 ----HWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 200 ----~~eeA~~~l~~Al~ldp~~ 218 (399)
+...|...+.++....+..
T Consensus 248 ~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 248 AKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred ccCCCHHHHHHHHHHHHHcCChh
Confidence 6666777777776666544
No 407
>PRK14294 chaperone protein DnaJ; Provisional
Probab=72.37 E-value=4.6 Score=40.51 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
..+++++++.+|+++|.++.+|..||.
T Consensus 42 ~~~~~f~~~~~Ay~vL~d~~~r~~yD~ 68 (366)
T PRK14294 42 EAEELFKEAAEAYEVLSDPKKRGIYDQ 68 (366)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 345689999999999999999999996
No 408
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=72.26 E-value=29 Score=39.93 Aligned_cols=98 Identities=23% Similarity=0.306 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIM--------LNP-SAIMYATRASVYIKMKKPNAAIRDATAALEIN----- 181 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~--------l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~----- 181 (399)
..+....+.|......+.|.+|.+ ..+++. +.| .+.+|..++..+.+++++.+|+..+.+|+-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g 1008 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG 1008 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc
Confidence 445666778888888888888888 444444 356 88999999999999999999999998886653
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737 182 ---PDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKI 214 (399)
Q Consensus 182 ---p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l 214 (399)
|+....|-+++...+.......|+..+.+++.+
T Consensus 1009 ~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 456788999999999999999999998888776
No 409
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.49 E-value=25 Score=31.54 Aligned_cols=50 Identities=30% Similarity=0.266 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737 168 NAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 168 ~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~ 218 (399)
...++..++.++..| ++..|.+++.++..+|+.++|.....++..+-|.+
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 445566677777777 67888899999999999999999999999999954
No 410
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.14 E-value=53 Score=32.85 Aligned_cols=107 Identities=14% Similarity=-0.081 Sum_probs=80.7
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C----
Q 044737 112 DEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP--S-AIMYATRASVYIKMKKPNAAIRDATAALEINP-D---- 183 (399)
Q Consensus 112 ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P--~-a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p-~---- 183 (399)
.++..--..+......+.+.|-|..|++.+.-.+.++| + .-+.+.+=...++.++|+--++.++....... +
T Consensus 97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~ 176 (360)
T PF04910_consen 97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSL 176 (360)
T ss_pred ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhh
Confidence 44566667788888899999999999999999999999 2 23333344444677888877887776555211 1
Q ss_pred CHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHHhhCCcH
Q 044737 184 SAKGYKTRGMAHAMLGHW---------------EEAVHDLHVASKIDFDE 218 (399)
Q Consensus 184 ~~~a~~~~g~a~~~lg~~---------------eeA~~~l~~Al~ldp~~ 218 (399)
-+..-+.++.|++.+++- +.|...+.+|+...|.-
T Consensus 177 lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 177 LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 234567788899999998 89999999999998863
No 411
>PRK14276 chaperone protein DnaJ; Provisional
Probab=71.08 E-value=3 Score=42.02 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 254 ERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 254 ~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
++++++++.+|++++.++++|+.||.
T Consensus 42 a~~~f~~i~~Ay~vL~d~~kR~~YD~ 67 (380)
T PRK14276 42 AEEKYKEVQEAYETLSDPQKRAAYDQ 67 (380)
T ss_pred HHHHHHHHHHHHHHhcCHhhhhhHhh
Confidence 45689999999999999999999996
No 412
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=70.90 E-value=36 Score=35.76 Aligned_cols=73 Identities=11% Similarity=0.006 Sum_probs=45.3
Q ss_pred HHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737 142 TEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215 (399)
Q Consensus 142 ~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld 215 (399)
.+-|+.|| +...|+.+-.-+. ...++++...|++.+..-|.++.+|...........+|+.-...|.+||.--
T Consensus 10 ~~rie~nP~di~sw~~lire~q-t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQ-TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHc-cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 45566666 6666665554443 2366666666666666666666666666666666666666666666665433
No 413
>PRK14282 chaperone protein DnaJ; Provisional
Probab=70.79 E-value=3.4 Score=41.45 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
.++++++++.+|+++|+++++|..||.
T Consensus 43 ~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 69 (369)
T PRK14282 43 EAEQKFKEIQEAYEVLSDPQKRAMYDR 69 (369)
T ss_pred HHHHHHHHHHHHHHHhcChhhHHHHhh
Confidence 456799999999999999999999996
No 414
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.20 E-value=24 Score=34.22 Aligned_cols=56 Identities=18% Similarity=0.083 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044737 156 TRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVA 211 (399)
Q Consensus 156 nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~A 211 (399)
.-+...+..+++..|...+..++...|.+..+..-++.||...|+.+.|...|...
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34555678899999999999999999999999999999999999999988776653
No 415
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=69.86 E-value=10 Score=28.93 Aligned_cols=32 Identities=34% Similarity=0.383 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIML 147 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l 147 (399)
..|..+..+|...=..++|.+|+.+|..+|..
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44556666666666667777777777666654
No 416
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.72 E-value=86 Score=34.98 Aligned_cols=105 Identities=17% Similarity=0.100 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C-------HHHHHHHHHHHHH----------cC--CHHHH-
Q 044737 115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----S-------AIMYATRASVYIK----------MK--KPNAA- 170 (399)
Q Consensus 115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~-------a~~~~nra~a~~~----------l~--~~~~A- 170 (399)
........+.|..+...|+|.+||++|..+|-.-| + +.-+...+.-|+- ++ ..+.+
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 44566777899999999999999999999997755 1 2223333322321 22 22333
Q ss_pred -HHHHHHHHHhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 171 -IRDATAALEINPDSAK-GYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 171 -i~d~~~Al~l~p~~~~-a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
+..|=.-..|.|-+.- ++..--.++++++++..|.....+.+++.|..+
T Consensus 1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~ 1118 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPP 1118 (1202)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCh
Confidence 2222223444554433 333333567889999999999999999998775
No 417
>PRK14291 chaperone protein DnaJ; Provisional
Probab=69.37 E-value=3.7 Score=41.43 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSSS 280 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~g 280 (399)
...++++++.+|+++|+++.+|..||.-
T Consensus 40 ~~~~~f~~i~~Ay~vLsd~~kR~~YD~~ 67 (382)
T PRK14291 40 EAEEKFKEINEAYQVLSDPEKRKLYDQF 67 (382)
T ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHhhh
Confidence 3457899999999999999999999963
No 418
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=69.14 E-value=12 Score=22.13 Aligned_cols=25 Identities=24% Similarity=0.082 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Q 044737 167 PNAAIRDATAALEINPDSAKGYKTR 191 (399)
Q Consensus 167 ~~~Ai~d~~~Al~l~p~~~~a~~~~ 191 (399)
++.|...|++++...|.++..|...
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHH
Confidence 3444444444444444444444433
No 419
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=68.65 E-value=1.9e+02 Score=31.93 Aligned_cols=7 Identities=0% Similarity=0.539 Sum_probs=2.7
Q ss_pred hhHHHHH
Q 044737 29 SFFRDYL 35 (399)
Q Consensus 29 ~f~~~~~ 35 (399)
+++|.|+
T Consensus 214 rClka~m 220 (1102)
T KOG1924|consen 214 RCLKAFM 220 (1102)
T ss_pred HHHHHHh
Confidence 3333333
No 420
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=67.94 E-value=57 Score=28.45 Aligned_cols=70 Identities=13% Similarity=-0.008 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHH
Q 044737 153 MYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAA 222 (399)
Q Consensus 153 ~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~ 222 (399)
.+..+..+-+...++..+...++..--+.|+.+..-..-|.+|...|+|.+|+..|+....-.+......
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~k 81 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGK 81 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHH
Confidence 3444455555688888888888877778999999999999999999999999999999988877654433
No 421
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.81 E-value=9.8 Score=25.85 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 044737 155 ATRASVYIKMKKPNAAIRDATAALE 179 (399)
Q Consensus 155 ~nra~a~~~l~~~~~Ai~d~~~Al~ 179 (399)
+++|.+|+.+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999995
No 422
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.80 E-value=19 Score=35.83 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=41.1
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CHHHHHHHHHHHHHcCCHHH
Q 044737 113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP---------SAIMYATRASVYIKMKKPNA 169 (399)
Q Consensus 113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P---------~a~~~~nra~a~~~l~~~~~ 169 (399)
.....+..+...|+.++..++|++|+..|..|..+.- +...++..|.+++++.+++.
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~ 101 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEES 101 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678999999999999999999999999998743 23444444555555444443
No 423
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=67.72 E-value=44 Score=28.78 Aligned_cols=42 Identities=17% Similarity=-0.051 Sum_probs=29.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737 174 ATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215 (399)
Q Consensus 174 ~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld 215 (399)
+....+-+..++..++.+|.||.++|+..+|-..+.+|++--
T Consensus 109 ~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 109 YNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333343455678899999999999999999999999988764
No 424
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.57 E-value=79 Score=33.80 Aligned_cols=85 Identities=19% Similarity=0.163 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~ 196 (399)
....|+..|..+++.+++..|.++|.+|-.+.. +-..|...|+-+.-......+-+..-.+. |+ .+|+
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~-------LlLl~t~~g~~~~l~~la~~~~~~g~~N~-AF----~~~~ 732 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARDLGS-------LLLLYTSSGNAEGLAVLASLAKKQGKNNL-AF----LAYF 732 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcchhh-------hhhhhhhcCChhHHHHHHHHHHhhcccch-HH----HHHH
Confidence 346789999999999999999999998776532 22223333433322121111211111121 11 2788
Q ss_pred hcCCHHHHHHHHHHHHh
Q 044737 197 MLGHWEEAVHDLHVASK 213 (399)
Q Consensus 197 ~lg~~eeA~~~l~~Al~ 213 (399)
.+|+++++++.+..--+
T Consensus 733 l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 733 LSGDYEECLELLISTQR 749 (794)
T ss_pred HcCCHHHHHHHHHhcCc
Confidence 89999998887765533
No 425
>PRK14292 chaperone protein DnaJ; Provisional
Probab=67.20 E-value=7.1 Score=39.18 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSSS 280 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~g 280 (399)
.+.++++.+.+|++++.++.+|+.||.-
T Consensus 39 ~a~~~~~~i~~Ay~vL~d~~~r~~yd~~ 66 (371)
T PRK14292 39 GAAEKFAQINEAYAVLSDAEKRAHYDRF 66 (371)
T ss_pred hHHHHHHHHHHHHHHhcchhhhhhHhhc
Confidence 3456889999999999999999999963
No 426
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=67.15 E-value=1.2e+02 Score=32.46 Aligned_cols=81 Identities=15% Similarity=0.090 Sum_probs=62.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044737 127 EAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAV 205 (399)
Q Consensus 127 ~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~ 205 (399)
.+-+++..+.|+...+.-+.-.. ++.....+|..+-..+..+.|-..|++.+..+|+ .+|+-.+.-+...|-...|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 94 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQ 94 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHH
Confidence 34455666777666654443333 6777778888888899999999999999999999 67888888888888888887
Q ss_pred HHHH
Q 044737 206 HDLH 209 (399)
Q Consensus 206 ~~l~ 209 (399)
..++
T Consensus 95 ~~~~ 98 (578)
T PRK15490 95 LILK 98 (578)
T ss_pred HHHH
Confidence 7766
No 427
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=66.94 E-value=16 Score=21.56 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHHhCC-CHHHHHHHHH
Q 044737 132 GKLDEAIELSTEAIMLNP-SAIMYATRAS 159 (399)
Q Consensus 132 g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~ 159 (399)
++++.|...|++++...| +..+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 456778888888888888 7777765543
No 428
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=66.41 E-value=1.4e+02 Score=32.76 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHh
Q 044737 199 GHWEEAVHDLHVASK 213 (399)
Q Consensus 199 g~~eeA~~~l~~Al~ 213 (399)
..|+.|+..|++.++
T Consensus 896 ~~~d~~~~~~e~~~~ 910 (1259)
T KOG0163|consen 896 SEYDVAVKNYEKLVK 910 (1259)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777777776654
No 429
>PRK14280 chaperone protein DnaJ; Provisional
Probab=66.33 E-value=4.9 Score=40.47 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 254 ERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 254 ~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
++++++++.+|+++|+++++|+.||.
T Consensus 42 a~~~f~~i~~Ay~vL~d~~kr~~yD~ 67 (376)
T PRK14280 42 ADEKFKEISEAYEVLSDDQKRAQYDQ 67 (376)
T ss_pred HHHHHHHHHHHHHHhccHhHHHHHHh
Confidence 56688999999999999999999996
No 430
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=65.71 E-value=92 Score=31.46 Aligned_cols=58 Identities=10% Similarity=-0.109 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CHHHHHHHHHHHH--HcCCHHHHHHHHHH
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP------SAIMYATRASVYI--KMKKPNAAIRDATA 176 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P------~a~~~~nra~a~~--~l~~~~~Ai~d~~~ 176 (399)
.....++..+|+..+|..|...|.+++...+ ...+|..++.+|. -.=+|.+|.+.+++
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3444577789999999999999999998753 3566677777765 46678899998875
No 431
>PRK11619 lytic murein transglycosylase; Provisional
Probab=65.32 E-value=55 Score=35.50 Aligned_cols=62 Identities=8% Similarity=-0.130 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044737 152 IMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASK 213 (399)
Q Consensus 152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ 213 (399)
.++-.+...-+..++|..+...+...-.-.......+|++|.++..+|+.++|...|+++..
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33444455556788888777666664333345678999999999999999999999998754
No 432
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=65.29 E-value=52 Score=24.13 Aligned_cols=12 Identities=25% Similarity=0.050 Sum_probs=5.8
Q ss_pred HHHHHHhhCCcH
Q 044737 207 DLHVASKIDFDE 218 (399)
Q Consensus 207 ~l~~Al~ldp~~ 218 (399)
.|..+++..++.
T Consensus 34 ~l~~~~~~~~~~ 45 (69)
T PF04212_consen 34 YLMQALKSESNP 45 (69)
T ss_dssp HHHHHHHHSTTH
T ss_pred HHHHHhccCCCH
Confidence 344445555544
No 433
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.26 E-value=28 Score=36.37 Aligned_cols=82 Identities=17% Similarity=0.174 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737 121 AKAKAMEAISEGKLDEAIELSTEAIMLNP---SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM 197 (399)
Q Consensus 121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~ 197 (399)
+...+..+.-.|+.+.|+..+..++...- .+.++.-||.++.-+.+|..|..++.....++ +|.+++|..=.+.+.
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-dWS~a~Y~Yfa~cc~ 348 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-DWSHAFYTYFAGCCL 348 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-hhhHHHHHHHHHHHH
Confidence 44566677777778888888888887222 67888899999999999999999998888775 677766654332223
Q ss_pred cCCHHH
Q 044737 198 LGHWEE 203 (399)
Q Consensus 198 lg~~ee 203 (399)
+..|+.
T Consensus 349 l~~~~~ 354 (546)
T KOG3783|consen 349 LQNWEV 354 (546)
T ss_pred hccHHH
Confidence 555544
No 434
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.98 E-value=26 Score=31.37 Aligned_cols=49 Identities=20% Similarity=0.250 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 044737 134 LDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINP 182 (399)
Q Consensus 134 ~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p 182 (399)
....++...+.++..|++..|.+++.++..+|+.++|.+...++..+.|
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4456666777788889999999999999999999999999999999999
No 435
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=64.79 E-value=52 Score=37.20 Aligned_cols=84 Identities=19% Similarity=0.151 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-----CHHHHHHH
Q 044737 134 LDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG-----HWEEAVHD 207 (399)
Q Consensus 134 ~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg-----~~eeA~~~ 207 (399)
|.+|+..|.+ +.-.| ...-|...|.+|..+++|++-++.+..|++..|.++..-..+-.+.+++. +...|...
T Consensus 535 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (932)
T PRK13184 535 FTQALSEFSY-LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVF 613 (932)
T ss_pred HHHHHHHHHH-hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443 11234 66778899999999999999999999999999998754433333322221 23445566
Q ss_pred HHHHHhhCCcH
Q 044737 208 LHVASKIDFDE 218 (399)
Q Consensus 208 l~~Al~ldp~~ 218 (399)
.--++.+-|..
T Consensus 614 ~~~~~~~~~~~ 624 (932)
T PRK13184 614 MLLALWIAPEK 624 (932)
T ss_pred HHHHHHhCccc
Confidence 66777777875
No 436
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.61 E-value=81 Score=28.52 Aligned_cols=91 Identities=12% Similarity=0.044 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHH
Q 044737 123 AKAMEAISEGKLDEAIELSTEAIMLNP-----SAIMYATRASVYIKMKKPNAAIRDATAA-LEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-----~a~~~~nra~a~~~l~~~~~Ai~d~~~A-l~l~p~~~~a~~~~g~a~~ 196 (399)
..|......|+-..||..|+++-.-.| .-.+...-+..++-.+.|+....-.+.. ..-+|--..+.--+|.+-+
T Consensus 99 r~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ 178 (221)
T COG4649 99 RAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAY 178 (221)
T ss_pred HHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHH
Confidence 344455555555556655555554433 1223333333444445554433322211 1112222233334555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 044737 197 MLGHWEEAVHDLHVASK 213 (399)
Q Consensus 197 ~lg~~eeA~~~l~~Al~ 213 (399)
+.|++..|.+.|.+...
T Consensus 179 kagd~a~A~~~F~qia~ 195 (221)
T COG4649 179 KAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccchHHHHHHHHHHHc
Confidence 56666666665555544
No 437
>PRK14301 chaperone protein DnaJ; Provisional
Probab=64.44 E-value=5.4 Score=40.12 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
+++++++++.+|+++|+++.+|..||.
T Consensus 42 ~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 68 (373)
T PRK14301 42 EAEQKFKEAAEAYEVLRDAEKRARYDR 68 (373)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence 356689999999999999999999996
No 438
>PRK14299 chaperone protein DnaJ; Provisional
Probab=63.74 E-value=6.1 Score=38.30 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
.++++++.+.+|+++++++++|..||.
T Consensus 41 ~~~~~f~~i~~Ay~~L~d~~kr~~yD~ 67 (291)
T PRK14299 41 GAEEKFKEINEAYTVLSDPEKRRIYDT 67 (291)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 456789999999999999999999996
No 439
>PRK10869 recombination and repair protein; Provisional
Probab=63.61 E-value=1.2e+02 Score=32.23 Aligned_cols=49 Identities=6% Similarity=-0.018 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737 169 AAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD 217 (399)
Q Consensus 169 ~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~ 217 (399)
.|+..+..+..++|.....+-.+-.++..+.+....+..|...+..||.
T Consensus 248 ~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~ 296 (553)
T PRK10869 248 SAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPN 296 (553)
T ss_pred HHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHH
Confidence 4555555556667777777777788888887777777777777777775
No 440
>COG4907 Predicted membrane protein [Function unknown]
Probab=63.38 E-value=6.1 Score=40.22 Aligned_cols=18 Identities=6% Similarity=0.130 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhCCcH
Q 044737 201 WEEAVHDLHVASKIDFDE 218 (399)
Q Consensus 201 ~eeA~~~l~~Al~ldp~~ 218 (399)
+..-+.+|.+.-+..|++
T Consensus 491 FKnfLsd~s~lke~~pes 508 (595)
T COG4907 491 FKNFLSDYSQLKEAKPES 508 (595)
T ss_pred HHHHHHhHHHHhhCCCcc
Confidence 344455666666666665
No 441
>PRK14283 chaperone protein DnaJ; Provisional
Probab=63.03 E-value=6.6 Score=39.55 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
...++++++.+|+++++++.+|..||.
T Consensus 42 ~a~~~f~~i~~Ay~~Lsd~~kR~~YD~ 68 (378)
T PRK14283 42 GAEEKFKEISEAYAVLSDDEKRQRYDQ 68 (378)
T ss_pred cHHHHHHHHHHHHHHhchhHHHHHHhh
Confidence 456799999999999999999999996
No 442
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.97 E-value=15 Score=28.04 Aligned_cols=16 Identities=31% Similarity=0.219 Sum_probs=7.5
Q ss_pred cCCHHHHHHHHHHHHH
Q 044737 164 MKKPNAAIRDATAALE 179 (399)
Q Consensus 164 l~~~~~Ai~d~~~Al~ 179 (399)
.|+|++|+..|..||+
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3444444444444444
No 443
>PF12854 PPR_1: PPR repeat
Probab=62.46 E-value=19 Score=22.60 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044737 150 SAIMYATRASVYIKMKKPNAAIRDAT 175 (399)
Q Consensus 150 ~a~~~~nra~a~~~l~~~~~Ai~d~~ 175 (399)
+...|..+-.+|.+.|+.++|++.++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55556666666666666666666554
No 444
>COG4371 Predicted membrane protein [Function unknown]
Probab=62.20 E-value=10 Score=35.59 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhh
Q 044737 359 PEVMAALQDVMK 370 (399)
Q Consensus 359 p~~~~~~~~~~~ 370 (399)
-++...|+.|.+
T Consensus 158 ~elk~eL~~iA~ 169 (334)
T COG4371 158 DELKSELQRIAQ 169 (334)
T ss_pred HHHHHHHHHHHH
Confidence 345555555543
No 445
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=61.98 E-value=15 Score=37.79 Aligned_cols=25 Identities=28% Similarity=0.606 Sum_probs=13.4
Q ss_pred chhccCCCHHHHh--hcCCHHHHHHHH
Q 044737 342 DFSKILNDPELMA--AFSDPEVMAALQ 366 (399)
Q Consensus 342 ~~~~~~~dpe~~~--~~~dp~~~~~~~ 366 (399)
.++.+++||++|. +|.||.+.+.++
T Consensus 167 ~vq~ll~Npd~mrq~I~anPqmq~lm~ 193 (493)
T KOG0010|consen 167 IVQSLLNNPDLMRQLIMANPQMQDLMQ 193 (493)
T ss_pred HHHHHhcChHHHHHHHhcCHHHHHHHh
Confidence 4455555555555 555555555443
No 446
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.16 E-value=1.5e+02 Score=31.49 Aligned_cols=88 Identities=14% Similarity=0.106 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHHh------------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------
Q 044737 132 GKLDEAIELSTEAIML------------NP-SAIMYATRASVYIKMKKPNAAIRDATAALEI------------------ 180 (399)
Q Consensus 132 g~~~~Ai~~y~~Ai~l------------~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l------------------ 180 (399)
..|++|-..|.-|+.. +| ....+...|.++...|+.+-|.....++|=.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 4588999988888775 34 4667778899999999988776666665431
Q ss_pred ---CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc-HH
Q 044737 181 ---NPDSA---KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD-EE 219 (399)
Q Consensus 181 ---~p~~~---~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~-~~ 219 (399)
.|.+. .++++.-.-+...|.|..|.+.++..++++|. |+
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDP 377 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDP 377 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCc
Confidence 12222 34555556677899999999999999999998 44
No 447
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.68 E-value=1.1e+02 Score=35.02 Aligned_cols=89 Identities=20% Similarity=0.156 Sum_probs=68.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHH------HHHh--------------CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044737 123 AKAMEAISEGKLDEAIELSTE------AIML--------------NP---SAIMYATRASVYIKMKKPNAAIRDATAALE 179 (399)
Q Consensus 123 ~~g~~~~~~g~~~~Ai~~y~~------Ai~l--------------~P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~ 179 (399)
..|+.+...+-|++|...|.+ |+.. .- ....|+.+|.+.++.+...+||+.|-+
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik--- 1129 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK--- 1129 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh---
Confidence 456667777777777766643 3321 11 478899999999999999999998844
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 044737 180 INPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDF 216 (399)
Q Consensus 180 l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp 216 (399)
.+++..|...-.+....|+|++-+.++..|.+.--
T Consensus 1130 --adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1130 --ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred --cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 46788899988899999999999999988876543
No 448
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=60.28 E-value=43 Score=34.57 Aligned_cols=79 Identities=23% Similarity=0.117 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG 199 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg 199 (399)
.|+..|..++..|+++-|..+|.++=.. ..+...|.-.|+-+.=.+..+.|....- +...-.+++.+|
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d~-------~~L~lLy~~~g~~~~L~kl~~~a~~~~~-----~n~af~~~~~lg 416 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAKDF-------SGLLLLYSSTGDREKLSKLAKIAEERGD-----INIAFQAALLLG 416 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT-H-------HHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCc-------cccHHHHHHhCCHHHHHHHHHHHHHccC-----HHHHHHHHHHcC
Confidence 6666666677777776666666653322 3344444455554333333333332221 111223455566
Q ss_pred CHHHHHHHHHH
Q 044737 200 HWEEAVHDLHV 210 (399)
Q Consensus 200 ~~eeA~~~l~~ 210 (399)
++++++..|..
T Consensus 417 d~~~cv~lL~~ 427 (443)
T PF04053_consen 417 DVEECVDLLIE 427 (443)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 66666655443
No 449
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=59.98 E-value=1.1e+02 Score=28.45 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=18.1
Q ss_pred cCCHHHHHHHHHHhhChHHHHHhhcCCcHHHH
Q 044737 356 FSDPEVMAALQDVMKNPANLAQHQANPKVAPI 387 (399)
Q Consensus 356 ~~dp~~~~~~~~~~~np~~~~~~~~~p~~~~~ 387 (399)
.+||-=.-.|-.-..+-+|+.--.-||.|+.-
T Consensus 124 INDPYDlGLLLRhLRHHSNLLAnIgdP~Vreq 155 (238)
T PF02084_consen 124 INDPYDLGLLLRHLRHHSNLLANIGDPEVREQ 155 (238)
T ss_pred cCChhhHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 35554333333344555666666678888764
No 450
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=59.98 E-value=71 Score=32.97 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737 182 PDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKI 214 (399)
Q Consensus 182 p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l 214 (399)
-++..-|.++|.+....|+++-|..+|+++-..
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 457889999999999999999999999987544
No 451
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=59.82 E-value=37 Score=29.69 Aligned_cols=65 Identities=22% Similarity=0.124 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044737 115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIM-------LNP--SAIMYATRASVYIKMKKPNAAIRDATAALE 179 (399)
Q Consensus 115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~-------l~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~ 179 (399)
..........++.+++.|+...|++.+..+-. .-| ......++|..++..|+|.+|...+..|+.
T Consensus 72 ~~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 72 TPEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 34566788899999999999999998875433 135 567778899999999999999988888764
No 452
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.22 E-value=28 Score=39.29 Aligned_cols=83 Identities=19% Similarity=0.167 Sum_probs=61.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------
Q 044737 121 AKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA------ 194 (399)
Q Consensus 121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a------ 194 (399)
....|..+|..+.|+.|.-+|.. ..-|..+|..+..+|+|..|++...+|-. .+.|...+.+
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~-------vSN~a~La~TLV~LgeyQ~AVD~aRKAns-----~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN-------VSNFAKLASTLVYLGEYQGAVDAARKANS-----TKTWKEVCFACVDKEE 1264 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHhchhh
Confidence 44789999999999999888873 45678899999999999999998887633 3344333333
Q ss_pred ------------------------HHhcCCHHHHHHHHHHHHhhC
Q 044737 195 ------------------------HAMLGHWEEAVHDLHVASKID 215 (399)
Q Consensus 195 ------------------------~~~lg~~eeA~~~l~~Al~ld 215 (399)
|...|.|++-+..++.++-+.
T Consensus 1265 FrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1265 FRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred hhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence 555677777777777766655
No 453
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=59.19 E-value=56 Score=26.48 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Q 044737 115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASV 160 (399)
Q Consensus 115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a 160 (399)
.+++......|...+-.|+|..|.+...++-+..+ ....|..-|.+
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~A 102 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARA 102 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 34455666666666677777777777666655544 33333333333
No 454
>PF15469 Sec5: Exocyst complex component Sec5
Probab=59.02 E-value=69 Score=28.42 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHhhCCc-HHHHHHHH
Q 044737 199 GHWEEAVHDLHVASKIDFD-EEIAAVLK 225 (399)
Q Consensus 199 g~~eeA~~~l~~Al~ldp~-~~~~~~lk 225 (399)
...++........+.|+++ |++|.++.
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l~ 180 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWLE 180 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 4566777777778888875 47776653
No 455
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=58.89 E-value=2.5e+02 Score=29.84 Aligned_cols=109 Identities=17% Similarity=-0.009 Sum_probs=77.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 044737 126 MEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASV-YIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEE 203 (399)
Q Consensus 126 ~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a-~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~ee 203 (399)
|...+..=...|...|.+|-+.-- .+.+|..-|.. |...+++.-|.+.++-.|+-.++.+..-+....-+..+++-..
T Consensus 374 n~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N 453 (656)
T KOG1914|consen 374 NFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNN 453 (656)
T ss_pred HHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchh
Confidence 333444455667777877765544 54555544443 6678999999999999999999999877777788889999999
Q ss_pred HHHHHHHHHhh--CCcH--HHHHHHHHHhHHHHhH
Q 044737 204 AVHDLHVASKI--DFDE--EIAAVLKKVEPNALRI 234 (399)
Q Consensus 204 A~~~l~~Al~l--dp~~--~~~~~lk~v~~~~~k~ 234 (399)
|...|++++.- .++. .+|...-..+.+.+.+
T Consensus 454 ~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 454 ARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 99999999987 5554 3343333334444443
No 456
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.00 E-value=1.9e+02 Score=28.11 Aligned_cols=217 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------
Q 044737 129 ISEGKLDEAIELSTEAIMLNP-----SAIMYATRASVYIKMKKPNAAIRDATAALEI----------------------- 180 (399)
Q Consensus 129 ~~~g~~~~Ai~~y~~Ai~l~P-----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l----------------------- 180 (399)
++..+..+|+.-|.+.+.+.+ -..++...-..++++++|.+-+..|.+.|..
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q ss_pred -----------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHH
Q 044737 181 -----------------------NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEH 237 (399)
Q Consensus 181 -----------------------~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~ 237 (399)
+--|-+.-..+|.+|+.++.|..-.+.+++...-...+.-..-+++-...+.-+.-.
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC--
Q 044737 238 RRKYDRLRREREERKVERE--------------------------RLRRRAEAQAAYEKAKKEEQSSSSERPGGMPGG-- 289 (399)
Q Consensus 238 ~~~ye~l~~~~e~kk~~~e--------------------------r~~~~~~A~~~~~~~~k~~~~d~g~~~~~~p~g-- 289 (399)
..-|-...--+..+.-|+. |..+-.+|-...=++-| +.+..|.|-.
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK------NYDEsGspRRtt 271 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK------NYDESGSPRRTT 271 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh------cccccCCcchhH
Q ss_pred -----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhccCCCHHHHh----
Q 044737 290 -----------AGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGNVDFSKILNDPELMA---- 354 (399)
Q Consensus 290 -----------~~g~~gg~~gg~~gg~~gg~~gg~~gg~~g~~~g~~~gg~~~~~~~~~p~~~~~~~~~~dpe~~~---- 354 (399)
+-+.-..|.++ ....--+|||+.+
T Consensus 272 CLKYLVLANMLmkS~iNPFDsQ-----------------------------------------EAKPyKNdPEIlAMTnl 310 (440)
T KOG1464|consen 272 CLKYLVLANMLMKSGINPFDSQ-----------------------------------------EAKPYKNDPEILAMTNL 310 (440)
T ss_pred HHHHHHHHHHHHHcCCCCCccc-----------------------------------------ccCCCCCCHHHHHHHHH
Q ss_pred --hcCCHHHHHHHHHHhhChHHHHHhhcCCcHHHHHHHHHHhc
Q 044737 355 --AFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKF 395 (399)
Q Consensus 355 --~~~dp~~~~~~~~~~~np~~~~~~~~~p~~~~~~~~l~~~~ 395 (399)
+.||-++...=+=+.+| -+.+|.||=|++-|..|+.+.
T Consensus 311 v~aYQ~NdI~eFE~Il~~~---~~~IM~DpFIReh~EdLl~ni 350 (440)
T KOG1464|consen 311 VAAYQNNDIIEFERILKSN---RSNIMDDPFIREHIEDLLRNI 350 (440)
T ss_pred HHHHhcccHHHHHHHHHhh---hccccccHHHHHHHHHHHHHH
No 457
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=57.74 E-value=44 Score=25.04 Aligned_cols=16 Identities=25% Similarity=0.300 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhCCcH
Q 044737 203 EAVHDLHVASKIDFDE 218 (399)
Q Consensus 203 eA~~~l~~Al~ldp~~ 218 (399)
.|+..|.++++..|+.
T Consensus 33 ~a~e~l~~~~~~~~~~ 48 (77)
T smart00745 33 KAIEYLLEGIKVESDS 48 (77)
T ss_pred HHHHHHHHHhccCCCH
Confidence 3344455555566654
No 458
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=57.62 E-value=23 Score=27.36 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAI 145 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai 145 (399)
-++.++|..+=..|+.+.|+.+|.++|
T Consensus 9 ~~~I~kaL~~dE~g~~e~Al~~Y~~gi 35 (79)
T cd02679 9 FEEISKALRADEWGDKEQALAHYRKGL 35 (79)
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 333333333333344444444443333
No 459
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=57.26 E-value=10 Score=36.69 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSSS 280 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~g 280 (399)
...+++..+.+|++++.+.+||+.||.-
T Consensus 80 ~a~~kF~eI~~AYEiLsd~eKR~~YD~~ 107 (288)
T KOG0715|consen 80 EASKKFKEISEAYEILSDEEKRQEYDVY 107 (288)
T ss_pred chhhHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 4456899999999999999999999843
No 460
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=57.14 E-value=92 Score=26.89 Aligned_cols=63 Identities=19% Similarity=0.138 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737 118 AAEAKAKAMEAISE-GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI 180 (399)
Q Consensus 118 a~~~k~~g~~~~~~-g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l 180 (399)
..++...|..++-. ++-++--+.+....+.+. ++.++..+|.+|-++|+-.+|-..+.+|.+-
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34555666555544 444444444555444334 9999999999999999999999988888764
No 461
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=55.67 E-value=88 Score=23.68 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhCCcHH
Q 044737 204 AVHDLHVASKIDFDEE 219 (399)
Q Consensus 204 A~~~l~~Al~ldp~~~ 219 (399)
|++.|..+++..++..
T Consensus 32 ale~~~~~~k~e~~~~ 47 (75)
T cd02684 32 ALQYFVPALHYETDAQ 47 (75)
T ss_pred HHHHHHHHHhhCCCHH
Confidence 3334444455555543
No 462
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=55.02 E-value=1.3e+02 Score=33.50 Aligned_cols=83 Identities=14% Similarity=0.059 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC--
Q 044737 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP------SAIMYATRASVYIKMKKPNAAIRDATAALEIN----PDS-- 184 (399)
Q Consensus 117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~----p~~-- 184 (399)
.++..--+|.++...++++.|+++.+.++..-| .+.+++..+.+..-.|++.+|+.....+.++. --+
T Consensus 457 ~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~ 536 (894)
T COG2909 457 LAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLA 536 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHH
Confidence 344555678899999999999999999999866 47899999999999999999999888887773 222
Q ss_pred HHHHHHHHHHHHhcC
Q 044737 185 AKGYKTRGMAHAMLG 199 (399)
Q Consensus 185 ~~a~~~~g~a~~~lg 199 (399)
.-+.+..+.++...|
T Consensus 537 ~~~~~~~s~il~~qG 551 (894)
T COG2909 537 LWSLLQQSEILEAQG 551 (894)
T ss_pred HHHHHHHHHHHHHhh
Confidence 234455677788888
No 463
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=54.46 E-value=26 Score=27.02 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044737 167 PNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASK 213 (399)
Q Consensus 167 ~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ 213 (399)
|+.|....++||..+ ..|+.+.|+..|++++.
T Consensus 5 ~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 5 YKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHH
Confidence 555666666666554 33556666666665554
No 464
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=54.40 E-value=1.5e+02 Score=31.81 Aligned_cols=102 Identities=14% Similarity=0.071 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------C-----C---------------HHHHHHHHHHHHHcCCHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLN-------P-----S---------------AIMYATRASVYIKMKKPNAA 170 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~-------P-----~---------------a~~~~nra~a~~~l~~~~~A 170 (399)
+-.+.--|..+...+..++|.+++.++++.- + + ..++...+.+.+-+++|..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 4455556888888888878888888888641 1 1 23334566777788999998
Q ss_pred HHHHHHHHHhC---CC------CHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhhCCcHH
Q 044737 171 IRDATAALEIN---PD------SAKGYKTRGMAHAMLGHWEEAVHDLH--------VASKIDFDEE 219 (399)
Q Consensus 171 i~d~~~Al~l~---p~------~~~a~~~~g~a~~~lg~~eeA~~~l~--------~Al~ldp~~~ 219 (399)
......+.... |. .+..++-.|..+...|+.+.|+..|. .+....+.++
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence 88888776653 22 37788999999999999999999998 5556666554
No 465
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.22 E-value=1.1e+02 Score=32.14 Aligned_cols=69 Identities=16% Similarity=0.068 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC---CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCcHH
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAALEI----NP---DSAKGYKTRGMAHAMLGH-WEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l----~p---~~~~a~~~~g~a~~~lg~-~eeA~~~l~~Al~ldp~~~ 219 (399)
..-|.-+|.++..+|+...|...+..+++. .- -.+-|+|-+|..|..++. ..+|.+.+.+|....-+++
T Consensus 449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 445667889999999999998888877732 11 126799999999999998 9999999999988776654
No 466
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=53.78 E-value=15 Score=26.73 Aligned_cols=38 Identities=29% Similarity=0.517 Sum_probs=18.4
Q ss_pred cCCCHHHHh----hcCCHHHH-HHHHHHh-hChHHHHHhhcCCc
Q 044737 346 ILNDPELMA----AFSDPEVM-AALQDVM-KNPANLAQHQANPK 383 (399)
Q Consensus 346 ~~~dpe~~~----~~~dp~~~-~~~~~~~-~np~~~~~~~~~p~ 383 (399)
+.++|.+.. +-+||++. ..++.|. +||..+..+.+||.
T Consensus 4 Lr~~Pqf~~lR~~vq~NP~lL~~lLqql~~~nP~l~q~I~~n~e 47 (59)
T PF09280_consen 4 LRNNPQFQQLRQLVQQNPQLLPPLLQQLGQSNPQLLQLIQQNPE 47 (59)
T ss_dssp GTTSHHHHHHHHHHHC-GGGHHHHHHHHHCCSHHHHHHHHHTHH
T ss_pred HHcChHHHHHHHHHHHCHHHHHHHHHHHhccCHHHHHHHHHCHH
Confidence 445555443 45566433 4444443 36665555555553
No 467
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=53.65 E-value=37 Score=37.04 Aligned_cols=26 Identities=23% Similarity=0.038 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044737 152 IMYATRASVYIKMKKPNAAIRDATAA 177 (399)
Q Consensus 152 ~~~~nra~a~~~l~~~~~Ai~d~~~A 177 (399)
.+|-..|.-|..+++|+-|.+.|.++
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhc
Confidence 44455666666777777766666553
No 468
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=52.80 E-value=1.9e+02 Score=26.73 Aligned_cols=53 Identities=9% Similarity=0.033 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHH-HHH-hCCCCHHHHHHHHHHHHhcCCHHH
Q 044737 151 AIMYATRASVYIKM-KKPNAAIRDATA-ALE-INPDSAKGYKTRGMAHAMLGHWEE 203 (399)
Q Consensus 151 a~~~~nra~a~~~l-~~~~~Ai~d~~~-Al~-l~p~~~~a~~~~g~a~~~lg~~ee 203 (399)
..+.++-|.+|... ..|..+++.+-. +|. -+++...++..++.+...+-.+-.
T Consensus 25 ~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~ 80 (215)
T cd07642 25 VKAIHTSGLAHVENEEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFK 80 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555443 246667776665 443 344455677777777766655544
No 469
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=52.79 E-value=65 Score=24.03 Aligned_cols=15 Identities=27% Similarity=0.151 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhCCcH
Q 044737 204 AVHDLHVASKIDFDE 218 (399)
Q Consensus 204 A~~~l~~Al~ldp~~ 218 (399)
|+..|..+++..++.
T Consensus 32 a~e~l~~~~~~~~~~ 46 (75)
T cd02656 32 ALDYLLQALKAEKEP 46 (75)
T ss_pred HHHHHHHHhccCCCH
Confidence 333444445555554
No 470
>PF13041 PPR_2: PPR repeat family
Probab=52.73 E-value=68 Score=21.53 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044737 152 IMYATRASVYIKMKKPNAAIRDATAALE 179 (399)
Q Consensus 152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~ 179 (399)
..|..+-.+|.+.+++++|++.+++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 471
>PRK14289 chaperone protein DnaJ; Provisional
Probab=52.68 E-value=10 Score=38.24 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
.+.++++++.+|++++.++++|..||.
T Consensus 43 ~a~~~f~~i~~Ay~~L~d~~~R~~yD~ 69 (386)
T PRK14289 43 EAEEKFKEAAEAYDVLSDPDKRSRYDQ 69 (386)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 355689999999999999999999996
No 472
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=52.16 E-value=25 Score=32.43 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=6.2
Q ss_pred CCHHHHHHHHHH
Q 044737 357 SDPEVMAALQDV 368 (399)
Q Consensus 357 ~dp~~~~~~~~~ 368 (399)
.+|++...++.+
T Consensus 55 ~~~~~~~~f~~v 66 (221)
T KOG0037|consen 55 TFPQLAGWFQSV 66 (221)
T ss_pred ccHHHHHHHHhh
Confidence 455555555554
No 473
>PF13041 PPR_2: PPR repeat family
Probab=51.58 E-value=69 Score=21.51 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 044737 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP--SAIMYATRASVY 161 (399)
Q Consensus 120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P--~a~~~~nra~a~ 161 (399)
.|...-..+.+.|++++|++.|.+-.+..- +...|..+-.++
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 345556778999999999999999988743 666666554444
No 474
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.99 E-value=35 Score=35.38 Aligned_cols=52 Identities=21% Similarity=0.208 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC
Q 044737 115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK 166 (399)
Q Consensus 115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~ 166 (399)
+-=+...+.+|...|..|+|..+.+++++++-.+| +..+....|.|+-+||-
T Consensus 449 mGGadrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgY 501 (655)
T COG2015 449 MGGADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGY 501 (655)
T ss_pred hccHHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhh
Confidence 33467788889999999999999999999998888 88888888888877763
No 475
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=49.65 E-value=1.3e+02 Score=26.15 Aligned_cols=96 Identities=26% Similarity=0.167 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------C------------------C---------------CHHHHHHH
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIML-------N------------------P---------------SAIMYATR 157 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l-------~------------------P---------------~a~~~~nr 157 (399)
|-.....+..++..|+.++|+..+.+|..+ + | ........
T Consensus 2 A~~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~ 81 (155)
T PF10938_consen 2 AMRDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKT 81 (155)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHH
Confidence 345567788889999999999999988864 1 1 14566778
Q ss_pred HHHHHHcCCHHHHHHHHHHHH-HhC------C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044737 158 ASVYIKMKKPNAAIRDATAAL-EIN------P-DSAKGYKTRGMAHAMLGHWEEAVHDLHVASK 213 (399)
Q Consensus 158 a~a~~~l~~~~~Ai~d~~~Al-~l~------p-~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ 213 (399)
+..+++.|+...|.+.+.-+- +++ | ........++..+...|+|.+|...+..++.
T Consensus 82 a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 82 ANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888899999999988776531 111 1 1244566788889999999999998888763
No 476
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=49.15 E-value=24 Score=23.11 Aligned_cols=28 Identities=36% Similarity=0.611 Sum_probs=18.7
Q ss_pred HHHHHH-HHHHhhCCCCCCccchhhHHHHHHHc
Q 044737 7 KELKQF-IDQCKSNPSILADPSLSFFRDYLESL 38 (399)
Q Consensus 7 ~~l~~~-~~~~~~~p~~l~~~~~~f~~~~~~~~ 38 (399)
..|+.| +++|+++|+ .-+.|..+|++.|
T Consensus 5 ~lL~~~~~~vl~~qP~----Di~~F~a~yF~~L 33 (38)
T PF02197_consen 5 ELLKEFTREVLREQPD----DILQFAADYFEKL 33 (38)
T ss_dssp HHHHHHHHHHHHH--S-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC----cHHHHHHHHHHHH
Confidence 346666 689999999 5578888888654
No 477
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=49.13 E-value=16 Score=35.60 Aligned_cols=27 Identities=15% Similarity=0.211 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 253 VERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 253 ~~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
...++++.+.+|++++.++.+|..||.
T Consensus 41 ~~~~~f~~i~~Ay~~L~~~~kr~~yD~ 67 (306)
T PRK10266 41 DAEARFKEVAEAWEVLSDEQRRAEYDQ 67 (306)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 456789999999999999999999985
No 478
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=48.66 E-value=30 Score=35.37 Aligned_cols=45 Identities=42% Similarity=0.615 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC------------CCCCCCCCCC--CCCCCCCC
Q 044737 294 PGGFPGGMPGGFPGGMPGGFPGGMPGG------------FPGGMPGGFP--GGMPGGGP 338 (399)
Q Consensus 294 ~gg~~gg~~gg~~gg~~gg~~gg~~g~------------~~g~~~gg~~--~~~~~~~p 338 (399)
+||++|+..+|...-.+||+.++.+|| ..|++++|++ ++.|.+.|
T Consensus 65 ~g~~g~~s~~g~~s~~~gg~~~~~g~gsscnP~~Sa~S~~S~~~~~g~~~g~gl~~s~p 123 (641)
T KOG3915|consen 65 GGGGGGGSGGGGGSSGNGGGGGGGGGGSSCNPNLSAASNGSGGGGGGISAGGGLFSSTP 123 (641)
T ss_pred CCCCCCCCCCCccccCCCCCCCCCCCccccCCcccccCCCCCCCCCCCCCCCCccCCCC
No 479
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=48.61 E-value=1.2e+02 Score=23.14 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=11.2
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 044737 196 AMLGHWEEAVHDLHVASK 213 (399)
Q Consensus 196 ~~lg~~eeA~~~l~~Al~ 213 (399)
-..|+|++|+.+|..|+.
T Consensus 17 D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 17 DQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 356666666666666654
No 480
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=48.49 E-value=1.1e+02 Score=22.86 Aligned_cols=15 Identities=20% Similarity=0.100 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhCCcH
Q 044737 204 AVHDLHVASKIDFDE 218 (399)
Q Consensus 204 A~~~l~~Al~ldp~~ 218 (399)
|+..|..+++..|+.
T Consensus 32 aie~l~~~~k~e~~~ 46 (75)
T cd02678 32 ALEYFMHALKYEKNP 46 (75)
T ss_pred HHHHHHHHHhhCCCH
Confidence 333445555556654
No 481
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=48.42 E-value=1.3e+02 Score=38.62 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----C----CHHHHHHHHHHHHhhCCcHHHH
Q 044737 150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML----G----HWEEAVHDLHVASKIDFDEEIA 221 (399)
Q Consensus 150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l----g----~~eeA~~~l~~Al~ldp~~~~~ 221 (399)
.+..+..+|.-+.+++++++|-..|..|+.++-..+++|+..|.-+..+ . --..|+.+|-+|+...-+..+.
T Consensus 2811 ~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaR 2890 (3550)
T KOG0889|consen 2811 KAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKAR 2890 (3550)
T ss_pred HHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhH
Confidence 4888899999999999999999999999999999999999998765432 1 2345788888888777555433
Q ss_pred HHHHH
Q 044737 222 AVLKK 226 (399)
Q Consensus 222 ~~lk~ 226 (399)
..+.+
T Consensus 2891 k~iak 2895 (3550)
T KOG0889|consen 2891 KLIAK 2895 (3550)
T ss_pred HHHHH
Confidence 33333
No 482
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=48.29 E-value=1.2e+02 Score=23.06 Aligned_cols=14 Identities=29% Similarity=0.128 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhC
Q 044737 168 NAAIRDATAALEIN 181 (399)
Q Consensus 168 ~~Ai~d~~~Al~l~ 181 (399)
..|+..+.+|++.+
T Consensus 4 ~~A~~l~~~Ave~d 17 (75)
T cd02677 4 EQAAELIRLALEKE 17 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555443
No 483
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=47.78 E-value=59 Score=27.27 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 044737 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP 149 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P 149 (399)
.......|..++..|++.+|+.+|-+||..+|
T Consensus 63 Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~ 94 (121)
T PF02064_consen 63 FLQQVQLGEQLLAQGDYEEAAEHFYNALKVCP 94 (121)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 45667889999999999999999999999988
No 484
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.42 E-value=2.8e+02 Score=29.62 Aligned_cols=92 Identities=15% Similarity=0.085 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--CHHH-HHHHHHHHHHcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHH
Q 044737 123 AKAMEAISEGKLDEAIELSTEAIMLNP--SAIM-YATRASVYIKMKKPNAAIRDATAA-----LEINPDSAKGYKTRGMA 194 (399)
Q Consensus 123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P--~a~~-~~nra~a~~~l~~~~~Ai~d~~~A-----l~l~p~~~~a~~~~g~a 194 (399)
..-..+-+.|-|..|.+.+.-.+.++| +..+ .+.+-...++..+|.=-|+.++.. |.+-|++. |.++.|
T Consensus 347 r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~---yS~AlA 423 (665)
T KOG2422|consen 347 RYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG---YSLALA 423 (665)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch---HHHHHH
Confidence 333444567888888888888888888 3222 122222223334444444444333 44445554 455555
Q ss_pred HHhcCC-----HHHHHHHHHHHHhhCCc
Q 044737 195 HAMLGH-----WEEAVHDLHVASKIDFD 217 (399)
Q Consensus 195 ~~~lg~-----~eeA~~~l~~Al~ldp~ 217 (399)
++.+.. -..|..++.+|+++.|.
T Consensus 424 ~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 424 RFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 554443 45688899999999983
No 485
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=47.18 E-value=1.6e+02 Score=29.01 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 044737 134 LDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGH-WEEAVHDLHVAS 212 (399)
Q Consensus 134 ~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~-~eeA~~~l~~Al 212 (399)
.++||.+.++|+..+ +.++|++|+..|..||+ |+..+.-|...++ -.+++..
T Consensus 7 l~kaI~lv~kA~~eD--------------~a~nY~eA~~lY~~ale--------YF~~~lKYE~~~~kaKd~Ira----- 59 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDED--------------NAKNYEEALRLYQNALE--------YFLHALKYEANNKKAKDSIRA----- 59 (439)
T ss_pred HHHHHHHHHHHhhhc--------------chhchHHHHHHHHHHHH--------HHHHHHHhhhcChhHHHHHHH-----
Q ss_pred hhCCcHHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737 213 KIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRR 246 (399)
Q Consensus 213 ~ldp~~~~~~~lk~v~~~~~k~~e~~~~ye~l~~ 246 (399)
++.+.+.++++.+.+.+....
T Consensus 60 -------------K~~EYLdRAEkLK~yL~~~~~ 80 (439)
T KOG0739|consen 60 -------------KFTEYLDRAEKLKAYLKEKEK 80 (439)
T ss_pred -------------HHHHHHHHHHHHHHHHHhhcc
No 486
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=46.97 E-value=3.9e+02 Score=28.52 Aligned_cols=12 Identities=17% Similarity=0.346 Sum_probs=6.6
Q ss_pred hHHHHHHHcCCC
Q 044737 30 FFRDYLESLHAK 41 (399)
Q Consensus 30 f~~~~~~~~g~~ 41 (399)
+-+.+|-.|++.
T Consensus 140 ~~r~lLD~f~~~ 151 (557)
T COG0497 140 LQRQLLDAFAGL 151 (557)
T ss_pred HHHHHHHHhcCc
Confidence 455666666543
No 487
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=46.75 E-value=60 Score=19.66 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737 171 IRDATAALEINPDSAKGYKTRGMAHA 196 (399)
Q Consensus 171 i~d~~~Al~l~p~~~~a~~~~g~a~~ 196 (399)
+..+..+|..+|.+-.+|..|-.++.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHH
Confidence 55666777777777777766655544
No 488
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.26 E-value=2.4e+02 Score=28.38 Aligned_cols=65 Identities=22% Similarity=0.000 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHH--HHHhcCCHHHHHHHHHHHHhhC
Q 044737 151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAK--GYKTRGM--AHAMLGHWEEAVHDLHVASKID 215 (399)
Q Consensus 151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~--a~~~~g~--a~~~lg~~eeA~~~l~~Al~ld 215 (399)
......++...+..++|..|.+.++.++..-|.... .|..+.. .+...-+|.+|...+++.+..+
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 456677888889999999999999999885333333 4444444 4457888999999999988764
No 489
>PRK14293 chaperone protein DnaJ; Provisional
Probab=45.84 E-value=19 Score=36.23 Aligned_cols=26 Identities=8% Similarity=0.187 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737 254 ERERLRRRAEAQAAYEKAKKEEQSSS 279 (399)
Q Consensus 254 ~~er~~~~~~A~~~~~~~~k~~~~d~ 279 (399)
..++++.+.+|++++.++.+|..||.
T Consensus 41 a~~~f~~i~~Ay~vL~~~~~R~~yd~ 66 (374)
T PRK14293 41 AEDRFKEINRAYEVLSDPETRARYDQ 66 (374)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 45688999999999999999999996
No 490
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=45.83 E-value=22 Score=38.71 Aligned_cols=80 Identities=19% Similarity=0.197 Sum_probs=63.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 044737 126 MEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEA 204 (399)
Q Consensus 126 ~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA 204 (399)
+.....++|..++...+-|+...| ...++..|+.||.-+++++-|+++..-....+|.+..+.-.....+..+..++-+
T Consensus 101 ~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~~~d~~ 180 (748)
T KOG4151|consen 101 YMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLELKDLA 180 (748)
T ss_pred HhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcCCc
Confidence 344567899999999999999999 8888999999999999999999998888888999876665555554444444444
Q ss_pred H
Q 044737 205 V 205 (399)
Q Consensus 205 ~ 205 (399)
.
T Consensus 181 s 181 (748)
T KOG4151|consen 181 S 181 (748)
T ss_pred c
Confidence 3
No 491
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=45.83 E-value=2.6e+02 Score=32.79 Aligned_cols=132 Identities=11% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC--CHHHHHHHHHHHHHcC--------------------
Q 044737 113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIML-----NP--SAIMYATRASVYIKMK-------------------- 165 (399)
Q Consensus 113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l-----~P--~a~~~~nra~a~~~l~-------------------- 165 (399)
......+..|..|+.++..|+|.+|+..|++|+.+ |. .+.++-.++.|.+-++
T Consensus 237 ~~r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~ 316 (1185)
T PF08626_consen 237 RKRCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISS 316 (1185)
T ss_pred chhhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCC
Q ss_pred -------------------------------------------CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 044737 166 -------------------------------------------KPNAAIRDATAALEINPDS------AKGYKTRGMAHA 196 (399)
Q Consensus 166 -------------------------------------------~~~~Ai~d~~~Al~l~p~~------~~a~~~~g~a~~ 196 (399)
.+++|+..|.++....-++ ..+..+.+..+.
T Consensus 317 ~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~ 396 (1185)
T PF08626_consen 317 STSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLV 396 (1185)
T ss_pred ccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHH
Q ss_pred hcC--------------------CHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737 197 MLG--------------------HWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRL 244 (399)
Q Consensus 197 ~lg--------------------~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~ye~l 244 (399)
... .-.++...+.+++.+...+-...-.-.+...+..++....+.++.
T Consensus 397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~ 464 (1185)
T PF08626_consen 397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKK 464 (1185)
T ss_pred HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHH
No 492
>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices. It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.
Probab=44.94 E-value=25 Score=23.62 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhCCCCCCccchhhHHHHHHH
Q 044737 8 ELKQFIDQCKSNPSILADPSLSFFRDYLES 37 (399)
Q Consensus 8 ~l~~~~~~~~~~p~~l~~~~~~f~~~~~~~ 37 (399)
.++.++++|+..|+ .-+.|+.+||-.
T Consensus 14 L~~gL~~l~~~rP~----DPi~~La~~Ll~ 39 (42)
T PF05186_consen 14 LTEGLAELAKERPE----DPIEFLAEYLLK 39 (42)
T ss_dssp HHHHHHHHHHH--S----SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC----ChHHHHHHHHHH
Confidence 46788999999998 456799999964
No 493
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=43.87 E-value=75 Score=34.84 Aligned_cols=26 Identities=15% Similarity=0.003 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044737 186 KGYKTRGMAHAMLGHWEEAVHDLHVA 211 (399)
Q Consensus 186 ~a~~~~g~a~~~lg~~eeA~~~l~~A 211 (399)
..+.+.|.-|...|++..|...|-+|
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhh
Confidence 45666677777777777666655444
No 494
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=43.75 E-value=37 Score=35.70 Aligned_cols=13 Identities=38% Similarity=0.596 Sum_probs=5.3
Q ss_pred CCCCCCCCCCCCC
Q 044737 316 GMPGGFPGGMPGG 328 (399)
Q Consensus 316 g~~g~~~g~~~gg 328 (399)
|+-||+||++.|+
T Consensus 909 G~qGg~ggq~rGs 921 (940)
T KOG4661|consen 909 GYQGGSGGQGRGS 921 (940)
T ss_pred ccccCCCCCCCCC
Confidence 3334444443333
No 495
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=43.32 E-value=1.7e+02 Score=30.16 Aligned_cols=99 Identities=21% Similarity=0.207 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------------------------CHHHHH
Q 044737 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMK---------------------------KPNAAI 171 (399)
Q Consensus 119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~---------------------------~~~~Ai 171 (399)
...+..|...+...+|.+++..+.+||+..- .+.-..+.|..++. +...++
T Consensus 32 ~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~--~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl 109 (471)
T KOG4459|consen 32 ELAYSHGLESYEEENWPEAVRFLERALRLFR--ALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACL 109 (471)
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHHHH--HHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999998732 00000111111111 112233
Q ss_pred HHHHHHHHhCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737 172 RDATAALEINPDS----------AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE 219 (399)
Q Consensus 172 ~d~~~Al~l~p~~----------~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~ 219 (399)
..|...+--.+.. ...|.++-.+|++.|++..|++.-...+-.+|++.
T Consensus 110 ~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde 167 (471)
T KOG4459|consen 110 RRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDE 167 (471)
T ss_pred HHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHH
Confidence 3343333323322 25788899999999999999999999999999984
No 496
>PF12854 PPR_1: PPR repeat
Probab=43.18 E-value=62 Score=20.20 Aligned_cols=27 Identities=19% Similarity=0.073 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044737 184 SAKGYKTRGMAHAMLGHWEEAVHDLHV 210 (399)
Q Consensus 184 ~~~a~~~~g~a~~~lg~~eeA~~~l~~ 210 (399)
+...|..+-.+|.+.|++++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456788888899999999999988764
No 497
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=43.06 E-value=87 Score=29.32 Aligned_cols=66 Identities=18% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCC--CHHHHHHHHHHH---------HHcCCHHHHHHHHHHHHHhC
Q 044737 118 AAEAKAKAMEAISEGK-----LDEAIELSTEAIMLNP--SAIMYATRASVY---------IKMKKPNAAIRDATAALEIN 181 (399)
Q Consensus 118 a~~~k~~g~~~~~~g~-----~~~Ai~~y~~Ai~l~P--~a~~~~nra~a~---------~~l~~~~~Ai~d~~~Al~l~ 181 (399)
+++...-+...+..|. +-..+...+.-..++. .+.+|...|.++ ...+++..|+..|.+|+.+|
T Consensus 129 aeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~ 208 (230)
T PHA02537 129 AEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLN 208 (230)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhC
Q ss_pred CC
Q 044737 182 PD 183 (399)
Q Consensus 182 p~ 183 (399)
|.
T Consensus 209 ~k 210 (230)
T PHA02537 209 DK 210 (230)
T ss_pred CC
No 498
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=42.81 E-value=8.1 Score=40.84 Aligned_cols=102 Identities=20% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCC--CHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCC-HHHH
Q 044737 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAI--MLNP--SAIMYATRASVYIKMKKPNAAIRDAT--AALEINPDS-AKGY 188 (399)
Q Consensus 116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai--~l~P--~a~~~~nra~a~~~l~~~~~Ai~d~~--~Al~l~p~~-~~a~ 188 (399)
.++.-+...+..++..|++..|...+.+.- .+++ ...+...+|.+.+..+++..|+..+. ....+.+.. ...|
T Consensus 22 ~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~ 101 (536)
T PF04348_consen 22 QRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYH 101 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHH
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737 189 KTRGMAHAMLGHWEEAVHDLHVASKIDFD 217 (399)
Q Consensus 189 ~~~g~a~~~lg~~eeA~~~l~~Al~ldp~ 217 (399)
..++.++...+++-+|+..+-..-.+-++
T Consensus 102 ~l~A~a~~~~~~~l~Aa~~~i~l~~lL~d 130 (536)
T PF04348_consen 102 QLRAQAYEQQGDPLAAARERIALDPLLPD 130 (536)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhcCC
No 499
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.04 E-value=1.1e+02 Score=26.17 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=0.0
Q ss_pred CCCcccCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHH
Q 044737 105 DSSAEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATR 157 (399)
Q Consensus 105 d~~~~~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nr 157 (399)
.+.....++...-...-..+|..++.+|++++.+.++..||.+++ .+.++.-+
T Consensus 68 ~pd~~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~vl 121 (143)
T KOG4056|consen 68 IPDPSDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQVL 121 (143)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHHHH
No 500
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=41.73 E-value=41 Score=19.55 Aligned_cols=29 Identities=24% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 044737 153 MYATRASVYIKMKKPNAAIRDATAALEIN 181 (399)
Q Consensus 153 ~~~nra~a~~~l~~~~~Ai~d~~~Al~l~ 181 (399)
.|..+-.+|.+.+++++|.+.+++-.+.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Done!