BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044738
         (347 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UNP|A Chain A, Structure Of Human Sun2 Sun Domain
          Length = 203

 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 13/109 (11%)

Query: 246 REIVEKEIEKHAADGLGRVDYALATSGAFVI--KHSDAYLAGKGSNWLSLSSRNGV---- 299
             IV++ +++++ D +G  DYAL + GA VI  + S+ Y         +L S  G+    
Sbjct: 10  HHIVKQALQRYSEDRIGLADYALESGGASVISTRCSETYETKT-----ALLSLFGIPLWY 64

Query: 300 HSYADK-MLKPSFGEPGQCFPLKGSSGFVQIKLRTAIIPEAITLEHVAK 347
           HS + + +L+P    PG C+  +G  GF  ++L   I P A+TLEHV K
Sbjct: 65  HSQSPRVILQPDV-HPGNCWAFQGPQGFAVVRLSARIRPTAVTLEHVPK 112


>pdb|4FI9|A Chain A, Structure Of Human Sun-Kash Complex
          Length = 195

 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 13/109 (11%)

Query: 246 REIVEKEIEKHAADGLGRVDYALATSGAFVI--KHSDAYLAGKGSNWLSLSSRNGV---- 299
             IV++ +++++ D +G  DYAL + GA VI  + S+ Y         +L S  G+    
Sbjct: 7   HHIVKQALQRYSEDRIGLADYALESGGASVISTRCSETYETKT-----ALLSLFGIPLWY 61

Query: 300 HSYADK-MLKPSFGEPGQCFPLKGSSGFVQIKLRTAIIPEAITLEHVAK 347
           HS + + +L+P    PG C+  +G  GF  ++L   I P A+TLEHV K
Sbjct: 62  HSQSPRVILQPDV-HPGNCWAFQGPQGFAVVRLSARIRPTAVTLEHVPK 109


>pdb|4DXT|A Chain A, Human Sun2 (Aa 522-717)
          Length = 198

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 13/109 (11%)

Query: 246 REIVEKEIEKHAADGLGRVDYALATSGAFVI--KHSDAYLAGKGSNWLSLSSRNGV---- 299
             IV++ +++++ D +G  DYAL + GA VI  + S+ Y         +L S  G+    
Sbjct: 10  HHIVKQALQRYSEDRIGLADYALESGGASVISTRCSETY-----ETKTALLSLFGIPLWY 64

Query: 300 HSYADK-MLKPSFGEPGQCFPLKGSSGFVQIKLRTAIIPEAITLEHVAK 347
           HS + + +L+P    PG C+  +G  GF  ++L   I P A+TLEHV K
Sbjct: 65  HSQSPRVILQPDV-HPGNCWAFQGPQGFAVVRLSARIRPTAVTLEHVPK 112


>pdb|4DXR|A Chain A, Human Sun2-Kash1 Complex
 pdb|4DXS|A Chain A, Human Sun2-Kash2 Complex
          Length = 202

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 13/109 (11%)

Query: 246 REIVEKEIEKHAADGLGRVDYALATSGAFVI--KHSDAYLAGKGSNWLSLSSRNGV---- 299
             IV++ +++++ D +G  DYAL + GA VI  + S+ Y         +L S  G+    
Sbjct: 14  HHIVKQALQRYSEDRIGLADYALESGGASVISTRCSETY-----ETKTALLSLFGIPLWY 68

Query: 300 HSYADK-MLKPSFGEPGQCFPLKGSSGFVQIKLRTAIIPEAITLEHVAK 347
           HS + + +L+P    PG C+  +G  GF  ++L   I P A+TLEHV K
Sbjct: 69  HSQSPRVILQPDV-HPGNCWAFQGPQGFAVVRLSARIRPTAVTLEHVPK 116


>pdb|2QMI|A Chain A, Structure Of The Octameric Penicillin-Binding Protein
           Homologue From Pyrococcus Abyssi
 pdb|2QMI|B Chain B, Structure Of The Octameric Penicillin-Binding Protein
           Homologue From Pyrococcus Abyssi
 pdb|2QMI|C Chain C, Structure Of The Octameric Penicillin-Binding Protein
           Homologue From Pyrococcus Abyssi
 pdb|2QMI|D Chain D, Structure Of The Octameric Penicillin-Binding Protein
           Homologue From Pyrococcus Abyssi
 pdb|2QMI|E Chain E, Structure Of The Octameric Penicillin-Binding Protein
           Homologue From Pyrococcus Abyssi
 pdb|2QMI|F Chain F, Structure Of The Octameric Penicillin-Binding Protein
           Homologue From Pyrococcus Abyssi
 pdb|2QMI|G Chain G, Structure Of The Octameric Penicillin-Binding Protein
           Homologue From Pyrococcus Abyssi
 pdb|2QMI|H Chain H, Structure Of The Octameric Penicillin-Binding Protein
           Homologue From Pyrococcus Abyssi
          Length = 447

 Score = 27.7 bits (60), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 270 TSGAFVIKHSDAYLAGK--GSNWLSLSSRNGVHSYADKMLKPSFGEPGQCF 318
           +SG   + +++A++ G   G NWL +S+     ++A  M K +  +PG+ F
Sbjct: 108 SSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERF 158


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.130    0.354 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,836,507
Number of Sequences: 62578
Number of extensions: 277116
Number of successful extensions: 530
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 6
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)