BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044738
(347 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BJS4|SUN2_MOUSE SUN domain-containing protein 2 OS=Mus musculus GN=Sun2 PE=1 SV=3
Length = 731
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 248 IVEKEIEKHAADGLGRVDYALATSGAFVI--KHSDAYLAGKGSNWLSLSSRNGV----HS 301
IV++ +++++ D +G VDYAL + GA VI + S+ Y +L S G+ HS
Sbjct: 545 IVKQALQRYSEDRIGMVDYALESGGASVISTRCSETYETKT-----ALLSLFGIPLWYHS 599
Query: 302 YADKMLKPSFGEPGQCFPLKGSSGFVQIKLRTAIIPEAITLEHVAK 347
+ +++ PG C+ +G GF ++L I P A+TLEHV K
Sbjct: 600 QSPRVILQPDVHPGNCWAFQGPQGFAVVRLSARIRPTAVTLEHVPK 645
>sp|Q9UH99|SUN2_HUMAN SUN domain-containing protein 2 OS=Homo sapiens GN=SUN2 PE=1 SV=3
Length = 717
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 11/106 (10%)
Query: 248 IVEKEIEKHAADGLGRVDYALATSGAFVI--KHSDAYLAGKGSNWLSLSSRNGV----HS 301
IV++ +++++ D +G DYAL + GA VI + S+ Y +L S G+ HS
Sbjct: 531 IVKQALQRYSEDRIGLADYALESGGASVISTRCSETYETKT-----ALLSLFGIPLWYHS 585
Query: 302 YADKMLKPSFGEPGQCFPLKGSSGFVQIKLRTAIIPEAITLEHVAK 347
+ +++ PG C+ +G GF ++L I P A+TLEHV K
Sbjct: 586 QSPRVILQPDVHPGNCWAFQGPQGFAVVRLSARIRPTAVTLEHVPK 631
>sp|Q5SS91|SUN3_MOUSE SUN domain-containing protein 3 OS=Mus musculus GN=Sun3 PE=2 SV=1
Length = 320
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 248 IVEKEIEKHAADGLGRVDYALATSGAFVIK--HSDAYLAGKGS-NWLSLSSRNGVHSYAD 304
+V ++K D + DYAL ++GA VI+ S++Y K W + N D
Sbjct: 132 LVHYVLKKFRGDQIQLADYALKSAGASVIEAGTSESYKNNKAKLYWHGIGFLN-YEMPPD 190
Query: 305 KMLKPSFGEPGQCFPLKGSSGFVQIKLRTAIIPEAITLEHVAK 347
+L+P PG+C+ GS G + IKL IIP A+T+EH+++
Sbjct: 191 MILQPDV-HPGKCWAFPGSQGHILIKLARKIIPTAVTMEHISE 232
>sp|Q95LV7|SUN3_MACFA SUN domain-containing protein 3 OS=Macaca fascicularis GN=SUN3 PE=2
SV=1
Length = 261
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 248 IVEKEIEKHAADGLGRVDYALATSGAFVIK--HSDAYLAGKGS-NWLSLSSRNGVHSYA- 303
+V ++K D + DYAL ++GA +I+ S++Y K W +S N H
Sbjct: 73 LVNYVLKKLREDQVQMADYALKSAGASIIEAGTSESYKNNKAKLYWHGISFLN--HEMPP 130
Query: 304 DKMLKPSFGEPGQCFPLKGSSGFVQIKLRTAIIPEAITLEHVAK 347
D +L+P PG C+ GS G IKL T IIP A+T+EH+++
Sbjct: 131 DIILQPDV-YPGNCWAFPGSQGHTLIKLATKIIPTAVTMEHISE 173
>sp|Q8TAQ9|SUN3_HUMAN SUN domain-containing protein 3 OS=Homo sapiens GN=SUN3 PE=2 SV=4
Length = 357
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 248 IVEKEIEKHAADGLGRVDYALATSGAFVIK--HSDAYLAGKGS-NWLSLSSRNGVHSYA- 303
+V ++K D + DYAL ++GA +I+ S++Y K W + N H
Sbjct: 169 LVNYVLKKLREDQVEMADYALKSAGASIIEAGTSESYKNNKAKLYWHGIGFLN--HEMPP 226
Query: 304 DKMLKPSFGEPGQCFPLKGSSGFVQIKLRTAIIPEAITLEHVAK 347
D +L+P PG+C+ GS G IKL T IIP A+T+EH+++
Sbjct: 227 DIILQPDV-YPGKCWAFPGSQGHTLIKLATKIIPTAVTMEHISE 269
>sp|O94901|SUN1_HUMAN SUN domain-containing protein 1 OS=Homo sapiens GN=SUN1 PE=1 SV=3
Length = 812
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 19/113 (16%)
Query: 245 AREIVEKEIEKHAADGLGRVDYALATSGAFVI--KHSDAY--------LAGKGSNWLSLS 294
AR IV ++ ++ D G VD+AL + G ++ + S+ Y L G + S S
Sbjct: 622 ARAIVNSALKLYSQDKTGMVDFALESGGGSILSTRCSETYETKTALMSLFGIPLWYFSQS 681
Query: 295 SRNGVHSYADKMLKPSFGEPGQCFPLKGSSGFVQIKLRTAIIPEAITLEHVAK 347
R +++P PG C+ KGS G++ ++L I P A TLEH+ K
Sbjct: 682 PR--------VVIQPDI-YPGNCWAFKGSQGYLVVRLSMMIHPAAFTLEHIPK 725
>sp|Q0II64|SUN3_BOVIN SUN domain-containing protein 3 OS=Bos taurus GN=SUN3 PE=2 SV=2
Length = 360
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 248 IVEKEIEKHAADGLGRVDYALATSGAFVIKH--SDAYLAGKGS-NWLSLSSRNGVHSYAD 304
+V ++K D + DYAL ++GA V++ S++Y K W + N D
Sbjct: 172 LVNYILKKLREDQVQMADYALKSAGASVVEAGTSESYKNNKAKLYWHGIGFLN-YEMPPD 230
Query: 305 KMLKPSFGEPGQCFPLKGSSGFVQIKLRTAIIPEAITLEHVAK 347
+L+P PG+C+ GS G IKL IIP A+T+EH+++
Sbjct: 231 IILQPDV-HPGKCWAFPGSQGHALIKLARKIIPTAVTMEHISE 272
>sp|Q9D666|SUN1_MOUSE SUN domain-containing protein 1 OS=Mus musculus GN=Sun1 PE=1 SV=2
Length = 913
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 19/113 (16%)
Query: 245 AREIVEKEIEKHAADGLGRVDYALATSGAFVI--KHSDAY--------LAGKGSNWLSLS 294
A IV ++ ++ D G VD+AL + G ++ + S+ Y L G + S S
Sbjct: 724 AHIIVNNALKLYSQDKTGMVDFALESGGGSILSTRCSETYETKTALLSLFGVPLWYFSQS 783
Query: 295 SRNGVHSYADKMLKPSFGEPGQCFPLKGSSGFVQIKLRTAIIPEAITLEHVAK 347
R +++P PG C+ KGS G++ ++L I P T+EH+ K
Sbjct: 784 PR--------VVIQPDI-YPGNCWAFKGSQGYLVVRLSMKIYPTTFTMEHIPK 827
>sp|Q8TC36|SUN5_HUMAN SUN domain-containing protein 5 OS=Homo sapiens GN=SUN5 PE=2 SV=1
Length = 379
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 24/147 (16%)
Query: 218 KFFEEFKKQKSGELSENDVSLDDIRVYAREI---------VEKEIEKHAADGLGRVDYAL 268
+ ++E + SGE+ + S++ + +E+ +K ++ D + + D+AL
Sbjct: 142 RLYQEKVRHHSGEIQDLRGSMNQLIAKLQEMEAMSDEQKMAQKIMKMIHGDYIEKPDFAL 201
Query: 269 ATSGAFV-IKHSDAYL----AGKGSNWLSLSSRNGVHSYA---DKMLKPSFGEPGQCFPL 320
+ GA + +H+ A NW+ L +YA D +L+P+ PG C+
Sbjct: 202 KSIGASIDFEHTSVTYNHEKAHSYWNWIQL------WNYAQPPDVILEPNV-TPGNCWAF 254
Query: 321 KGSSGFVQIKLRTAIIPEAITLEHVAK 347
+G G V I+L + +TL+H+ K
Sbjct: 255 EGDRGQVTIQLAQKVYLSNLTLQHIPK 281
>sp|Q9DA32|SUN5_MOUSE SUN domain-containing protein 5 OS=Mus musculus GN=Sun5 PE=2 SV=1
Length = 348
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 246 REIVEKEIEKHAADGLGRVDYALATSGAFV-IKHSDAYL----AGKGSNWLSLSSRNGVH 300
+++ +K ++ D + + D+AL + GA + +H+ A A NW+ L
Sbjct: 152 QKMAQKIMKMIQGDYIEKPDFALKSIGASIDFEHTSATYNHDKARSYWNWIRL------W 205
Query: 301 SYA---DKMLKPSFGEPGQCFPLKGSSGFVQIKLRTAIIPEAITLEHVAK 347
+YA D +L+P+ PG C+ G V I+L + ITL+H+ K
Sbjct: 206 NYAQPPDVILEPNV-TPGNCWAFASDRGQVTIRLAQKVYLSNITLQHIPK 254
>sp|Q558Z2|SUN1_DICDI Sun domain-containing protein 1 OS=Dictyostelium discoideum GN=sun1
PE=1 SV=1
Length = 905
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 39/140 (27%)
Query: 237 SLDDIRVYAREIVEKEIEKHAADGLGRVDYALATSGAFV---------------IKHSDA 281
SL+ I++ ++E +E ++AD + +VDYAL +GA + IK S +
Sbjct: 631 SLEGIKL----LIEDILEVYSADKIAKVDYALGLAGASIEYNALHYRVSETYPPIKGSGS 686
Query: 282 --------------YLAGKGSNWLSLSSR-NGVHSYADKMLKPSFGEPGQCFPLKGSSGF 326
Y +NW+ + N + D M+ G C+ +G
Sbjct: 687 GSGSGGANGNSLGLYYYNLATNWIFPQPKPNPPETILDPMVN-----TGSCWGFYTGNGT 741
Query: 327 VQIKLRTAIIPEAITLEHVA 346
+ I+L I +T+EH++
Sbjct: 742 IVIRLAKKIAITEVTMEHIS 761
>sp|A7NHM5|RNY_ROSCS Ribonuclease Y OS=Roseiflexus castenholzii (strain DSM 13941 /
HLO8) GN=rny PE=3 SV=1
Length = 535
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 72/132 (54%), Gaps = 11/132 (8%)
Query: 144 SEFERRITEVENFLKTTTKMMQLQVEVLDRKVES----EMGGLRRERELKKLEEKSEGL- 198
+E E +I E L + +Q + E LDRK+E E +RER++++L +++E L
Sbjct: 93 TEAEAQIREARAALAKQEERLQRKEENLDRKIEGLERRERQLQQRERQMEQLHQEAEHLR 152
Query: 199 ERTLSELKAVDWLSKEE-----FEKFFEEFKKQKSGELSENDVSL-DDIRVYAREIVEKE 252
++ +EL+ + LS+EE ++ +E + + + + E + ++ ++ AR+++
Sbjct: 153 QQQRAELERISALSQEEARAIILKRVEDETRDEAARRIREIEKTMHEEADKLARKVISMA 212
Query: 253 IEKHAADGLGRV 264
I++ A+D + V
Sbjct: 213 IQRCASDYVAEV 224
>sp|Q09825|SAD1_SCHPO Spindle pole body-associated protein sad1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=sad1 PE=1 SV=1
Length = 514
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 29/158 (18%)
Query: 209 DWLSKEEFEKFF----EEFKKQKSGELSENDVSL-------DDIRVYAREIVEKEIEKHA 257
D ++K+EF+K E+ K+ E+S S+ DD + + +E + K+
Sbjct: 252 DLITKKEFDKILQQKVEQLKQSLKEEMSNYKSSVPFEVELNDDWKFF----IESTVRKYL 307
Query: 258 ADGLGRVDYALATSGAFV---------IKHSDAYLAGKGSNWL-SLSSRNGVHSYADKML 307
D + ++AL ++GA V ++ A++ S + SL R S A L
Sbjct: 308 TDPVSMPNFALLSTGAEVLPALTSKRYVRRPSAFIPRFTSYFFDSLVVRGHEPSIA---L 364
Query: 308 KPSFGEPGQCFPLKGSSGFVQIKLRTAIIPEAITLEHV 345
P+ C+ +GS G + I L + +T+EHV
Sbjct: 365 TPN-NAVAMCWSFQGSEGQLGISLSRPVYVTNVTIEHV 401
>sp|Q2KJD6|SDCG3_BOVIN Serologically defined colon cancer antigen 3 homolog OS=Bos taurus
GN=SDCCAG3 PE=2 SV=1
Length = 359
Score = 32.3 bits (72), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 144 SEFERRITEVENFLKTTTKMMQLQVEVLDRKVESEMGGLRRERELKKLEEKSEGLERTL 202
S+ R++TE+++F +T T+M V L+RK+E++M ++ E + LE + +E+ L
Sbjct: 203 SKLRRKLTEIQSFSETQTEM----VRTLERKLEAKM--IKEESDYHDLESVVQQVEQNL 255
>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
(isolate 3D7) GN=PF11_0240 PE=3 SV=1
Length = 5251
Score = 32.0 bits (71), Expect = 6.4, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 171 LDRKVESE---MGGLRRERELKKLEEKSEGLERTLSELKAVDWLSKEEFEKFFEEFKKQK 227
+D K+ E + GL E++ ++ + + +TL EL + S E ++K + KK+K
Sbjct: 4857 IDEKLNKEQTYLLGLHINAEIEYMKNECSRILQTLQELSNKEIASTESYKKNTKIIKKEK 4916
Query: 228 SGELSENDVSLDDIRVYAREIVEKEIEKHAA 258
G+ +N + D + + + E EKH+
Sbjct: 4917 PGDNKDNKYTHDQKKETIHKEEDDEDEKHSG 4947
>sp|P57296|PBPB_BUCAI Penicillin-binding protein 1B OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=mrcB PE=3 SV=1
Length = 760
Score = 31.6 bits (70), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 133 SGDSAGAELGFSEFERRITE-VENF--LKTTTKMMQLQVEVLDRKVESEMGGLRRERELK 189
S + +L EF ++I ++NF K T + +++ V+ E+ L+R++ LK
Sbjct: 350 SSHPSFIQLVCEEFHKKIYNPIKNFPGTKIFTTLDYTSQNAVEQAVKIEIPILKRKKRLK 409
Query: 190 KLEEKSEGLERTLSELKAVDWLSKEEFEKFFEEFKKQKS-GELSE 233
LE ++R E++A+ SK EF + K ++S G LS+
Sbjct: 410 DLEVAMIVIDRFTGEVQALIGSSKPEFNGYNRALKTRRSIGSLSK 454
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,604,709
Number of Sequences: 539616
Number of extensions: 5110658
Number of successful extensions: 19155
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 326
Number of HSP's that attempted gapping in prelim test: 18748
Number of HSP's gapped (non-prelim): 686
length of query: 347
length of database: 191,569,459
effective HSP length: 118
effective length of query: 229
effective length of database: 127,894,771
effective search space: 29287902559
effective search space used: 29287902559
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)