Query 044738
Match_columns 347
No_of_seqs 163 out of 242
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:15:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2687 Spindle pole body prot 100.0 6E-39 1.3E-43 318.4 13.4 286 51-347 12-326 (414)
2 PF07738 Sad1_UNC: Sad1 / UNC- 99.3 1.7E-12 3.7E-17 110.5 3.0 47 300-347 5-54 (135)
3 PF10805 DUF2730: Protein of u 81.2 6.3 0.00014 33.2 6.7 52 145-204 46-97 (106)
4 KOG0034 Ca2+/calmodulin-depend 80.5 3.1 6.8E-05 38.5 5.1 53 204-266 114-166 (187)
5 PF13499 EF-hand_7: EF-hand do 77.7 3.5 7.6E-05 30.1 3.7 48 206-266 12-59 (66)
6 PRK09039 hypothetical protein; 76.1 72 0.0016 32.0 13.5 11 99-109 16-26 (343)
7 PF05597 Phasin: Poly(hydroxya 72.1 71 0.0015 28.3 11.5 60 162-224 57-119 (132)
8 PF04799 Fzo_mitofusin: fzo-li 68.1 11 0.00025 34.8 5.4 86 116-205 55-146 (171)
9 PRK06975 bifunctional uroporph 66.0 1.4E+02 0.0031 32.5 14.0 58 145-205 354-411 (656)
10 TIGR00998 8a0101 efflux pump m 66.0 70 0.0015 30.6 10.6 19 205-223 137-155 (334)
11 PF07106 TBPIP: Tat binding pr 65.0 74 0.0016 28.2 9.8 52 172-223 95-154 (169)
12 PRK10803 tol-pal system protei 65.0 46 0.001 32.1 9.1 71 107-185 3-76 (263)
13 TIGR02961 allantoicase allanto 65.0 16 0.00034 37.0 6.0 64 262-343 171-240 (322)
14 PF04375 HemX: HemX; InterPro 62.0 1.7E+02 0.0036 29.7 12.8 10 120-129 41-50 (372)
15 PRK13922 rod shape-determining 59.0 48 0.001 31.6 8.0 33 172-204 78-111 (276)
16 PF11374 DUF3176: Protein of u 56.0 19 0.0004 30.7 4.2 33 102-134 25-57 (111)
17 PF10146 zf-C4H2: Zinc finger- 54.1 85 0.0018 30.2 8.7 80 143-222 3-89 (230)
18 PF00261 Tropomyosin: Tropomyo 52.6 69 0.0015 30.2 7.8 20 186-205 197-216 (237)
19 PF12761 End3: Actin cytoskele 51.9 1.1E+02 0.0025 28.9 9.0 62 143-204 105-185 (195)
20 PRK13797 putative bifunctional 50.9 30 0.00065 37.1 5.6 64 262-343 183-252 (516)
21 COG3167 PilO Tfp pilus assembl 49.6 1.2E+02 0.0027 28.9 8.8 37 188-225 75-111 (211)
22 PF05529 Bap31: B-cell recepto 49.3 1.4E+02 0.0031 27.0 9.1 27 172-198 156-187 (192)
23 PF10828 DUF2570: Protein of u 48.9 1.6E+02 0.0035 24.7 12.3 41 113-170 7-47 (110)
24 PRK13257 allantoicase; Provisi 48.2 35 0.00076 34.7 5.4 25 259-283 13-37 (336)
25 PF02346 Vac_Fusion: Chordopox 47.8 51 0.0011 25.5 5.0 43 142-185 2-44 (57)
26 COG2433 Uncharacterized conser 47.7 2.9E+02 0.0063 30.6 12.3 67 172-242 452-526 (652)
27 PRK10476 multidrug resistance 47.6 2.8E+02 0.0061 27.1 11.9 20 205-224 143-162 (346)
28 PF06401 Alpha-2-MRAP_C: Alpha 47.5 60 0.0013 31.1 6.6 74 123-205 114-202 (214)
29 cd05029 S-100A6 S-100A6: S-100 46.9 1E+02 0.0022 24.9 6.9 62 192-267 6-71 (88)
30 PRK13257 allantoicase; Provisi 45.2 40 0.00088 34.3 5.3 62 264-343 184-251 (336)
31 TIGR02132 phaR_Bmeg polyhydrox 44.1 1.3E+02 0.0028 28.4 8.0 70 145-221 83-152 (189)
32 PF13677 MotB_plug: Membrane M 43.5 57 0.0012 24.7 4.7 29 93-121 8-36 (58)
33 PF05667 DUF812: Protein of un 43.4 3.4E+02 0.0074 29.7 12.2 43 143-185 389-434 (594)
34 cd05022 S-100A13 S-100A13: S-1 41.2 1.1E+02 0.0024 24.9 6.4 45 207-267 22-67 (89)
35 PF11166 DUF2951: Protein of u 40.8 71 0.0015 27.2 5.2 45 144-188 7-57 (98)
36 TIGR02961 allantoicase allanto 40.4 54 0.0012 33.2 5.3 75 263-343 2-80 (322)
37 TIGR03319 YmdA_YtgF conserved 40.2 2.5E+02 0.0054 30.0 10.4 22 240-261 179-200 (514)
38 cd05024 S-100A10 S-100A10: A s 39.7 1E+02 0.0022 25.7 6.1 58 198-267 10-68 (91)
39 PF04799 Fzo_mitofusin: fzo-li 39.2 46 0.001 30.9 4.3 11 175-185 125-135 (171)
40 cd07643 I-BAR_IMD_MIM Inverse 37.4 4E+02 0.0088 26.0 11.6 69 96-164 18-94 (231)
41 PF13833 EF-hand_8: EF-hand do 37.1 54 0.0012 23.0 3.5 44 208-267 2-45 (54)
42 PRK12704 phosphodiesterase; Pr 36.7 3.6E+02 0.0079 28.8 11.0 23 240-262 185-207 (520)
43 PRK12705 hypothetical protein; 35.2 6E+02 0.013 27.4 13.4 24 239-262 172-195 (508)
44 KOG4403 Cell surface glycoprot 35.2 2.7E+02 0.0058 29.9 9.4 23 111-133 215-237 (575)
45 cd05027 S-100B S-100B: S-100B 35.2 1.4E+02 0.0031 23.9 6.2 62 193-267 5-71 (88)
46 PF00261 Tropomyosin: Tropomyo 35.1 1.7E+02 0.0038 27.5 7.6 17 145-161 138-154 (237)
47 PRK00106 hypothetical protein; 35.0 4.2E+02 0.0091 28.7 11.2 23 240-262 200-222 (535)
48 PRK00888 ftsB cell division pr 34.6 1.5E+02 0.0033 24.9 6.4 58 113-185 6-63 (105)
49 PF02646 RmuC: RmuC family; I 34.2 2.9E+02 0.0064 27.1 9.3 18 259-276 103-120 (304)
50 KOG2629 Peroxisomal membrane a 34.1 4.5E+02 0.0099 26.6 10.5 17 117-133 95-111 (300)
51 PF00754 F5_F8_type_C: F5/8 ty 33.6 62 0.0013 25.4 3.8 40 302-344 16-57 (129)
52 PF08317 Spc7: Spc7 kinetochor 33.2 3.6E+02 0.0078 26.7 9.8 17 145-161 139-155 (325)
53 KOG0996 Structural maintenance 33.1 3.2E+02 0.0069 32.6 10.3 8 175-182 870-877 (1293)
54 PF05010 TACC: Transforming ac 32.8 3.3E+02 0.0073 25.8 9.0 46 175-224 148-202 (207)
55 KOG0448 Mitofusin 1 GTPase, in 32.6 1.6E+02 0.0035 33.0 7.8 60 145-205 661-724 (749)
56 PRK13797 putative bifunctional 32.5 76 0.0016 34.1 5.2 25 259-283 6-30 (516)
57 PF04102 SlyX: SlyX; InterPro 32.5 1.3E+02 0.0029 23.3 5.4 25 144-168 7-31 (69)
58 TIGR01005 eps_transp_fam exopo 30.4 5.9E+02 0.013 27.8 11.6 31 243-276 386-416 (754)
59 PF00036 EF-hand_1: EF hand; 30.2 31 0.00067 22.6 1.2 18 249-266 2-19 (29)
60 PF15466 DUF4635: Domain of un 30.1 66 0.0014 28.6 3.6 69 113-184 34-112 (135)
61 COG4755 Uncharacterized protei 29.9 1.6E+02 0.0035 26.7 6.0 25 146-170 6-30 (151)
62 PF05266 DUF724: Protein of un 29.7 4.7E+02 0.01 24.4 10.4 86 113-205 46-143 (190)
63 cd00213 S-100 S-100: S-100 dom 29.0 2.4E+02 0.0053 21.7 6.4 65 191-267 3-71 (88)
64 TIGR01837 PHA_granule_1 poly(h 28.5 2.9E+02 0.0063 23.7 7.2 64 153-223 28-105 (118)
65 PF12072 DUF3552: Domain of un 28.1 4.8E+02 0.01 24.0 11.4 22 239-260 180-201 (201)
66 PRK07734 motB flagellar motor 27.8 79 0.0017 30.2 4.0 32 93-124 10-41 (259)
67 COG3334 Uncharacterized conser 27.0 5.5E+02 0.012 24.4 10.1 100 116-221 18-126 (192)
68 cd05026 S-100Z S-100Z: S-100Z 26.8 1.8E+02 0.0039 23.3 5.4 64 191-267 5-73 (93)
69 PF03561 Allantoicase: Allanto 26.7 1.7E+02 0.0038 26.4 5.8 19 325-343 52-70 (152)
70 PF04350 PilO: Pilus assembly 26.6 1.6E+02 0.0035 24.6 5.3 50 175-225 11-61 (144)
71 COG4942 Membrane-bound metallo 26.5 3.6E+02 0.0079 28.4 8.7 25 193-217 112-143 (420)
72 PF04375 HemX: HemX; InterPro 26.4 6.3E+02 0.014 25.6 10.3 11 99-109 28-38 (372)
73 PF13747 DUF4164: Domain of un 26.3 3.7E+02 0.008 22.1 8.7 59 142-205 9-72 (89)
74 PF09728 Taxilin: Myosin-like 25.9 3.3E+02 0.0072 27.1 8.1 64 143-206 218-306 (309)
75 COG2959 HemX Uncharacterized e 25.9 7.9E+02 0.017 25.8 12.8 14 169-182 89-102 (391)
76 PRK12799 motB flagellar motor 25.7 83 0.0018 32.9 4.0 30 96-125 21-50 (421)
77 PF10234 Cluap1: Clusterin-ass 25.0 4.5E+02 0.0098 26.0 8.7 32 150-185 160-191 (267)
78 PF14257 DUF4349: Domain of un 24.9 1.3E+02 0.0028 28.4 4.9 25 141-165 132-156 (262)
79 KOG0933 Structural maintenance 24.8 3.8E+02 0.0082 31.6 9.0 41 145-185 784-830 (1174)
80 cd05030 calgranulins Calgranul 24.8 2.4E+02 0.0051 22.4 5.7 47 208-267 24-71 (88)
81 PF04380 BMFP: Membrane fusoge 24.5 98 0.0021 24.8 3.4 19 205-223 41-59 (79)
82 PF02315 MDH: Methanol dehydro 24.3 29 0.00062 29.3 0.3 7 312-318 29-35 (93)
83 KOG0250 DNA repair protein RAD 24.2 8.8E+02 0.019 28.7 11.8 38 145-184 686-724 (1074)
84 KOG0804 Cytoplasmic Zn-finger 23.9 4.3E+02 0.0093 28.4 8.7 13 237-249 436-448 (493)
85 KOG4637 Adaptor for phosphoino 23.8 3.3E+02 0.0073 28.7 7.8 40 145-185 168-207 (464)
86 PF10158 LOH1CR12: Tumour supp 23.1 4E+02 0.0088 23.5 7.3 54 145-205 53-106 (131)
87 TIGR03752 conj_TIGR03752 integ 23.1 3.2E+02 0.0069 29.3 7.7 35 171-205 99-135 (472)
88 PRK00736 hypothetical protein; 22.9 2.4E+02 0.0052 22.1 5.2 27 143-169 7-33 (68)
89 cd05023 S-100A11 S-100A11: S-1 22.9 2.3E+02 0.0049 22.9 5.3 64 191-267 4-72 (89)
90 smart00502 BBC B-Box C-termina 22.8 3.9E+02 0.0085 21.2 8.0 41 145-185 11-54 (127)
91 PF02646 RmuC: RmuC family; I 22.2 4.2E+02 0.0091 26.0 8.0 48 175-222 36-84 (304)
92 PRK09041 motB flagellar motor 22.1 1.1E+02 0.0025 30.5 4.1 35 90-124 14-48 (317)
93 PLN02320 seryl-tRNA synthetase 22.0 1.7E+02 0.0037 31.4 5.5 20 90-109 51-70 (502)
94 PF12918 TcdB_N: TcdB toxin N- 21.6 3.1E+02 0.0068 21.4 5.6 56 145-200 2-65 (66)
95 PF04065 Not3: Not1 N-terminal 21.6 6.6E+02 0.014 24.3 9.0 33 146-182 116-148 (233)
96 PF07889 DUF1664: Protein of u 21.4 4.6E+02 0.01 23.1 7.2 11 175-185 87-97 (126)
97 KOG0994 Extracellular matrix g 21.3 8.2E+02 0.018 29.8 10.8 51 99-157 1166-1217(1758)
98 COG1777 Predicted transcriptio 21.3 4E+02 0.0086 25.8 7.3 44 142-185 119-165 (217)
99 PF08580 KAR9: Yeast cortical 21.1 3.3E+02 0.0071 30.3 7.6 102 122-225 201-317 (683)
100 KOG0971 Microtubule-associated 20.9 5.3E+02 0.011 30.3 9.1 51 173-223 342-405 (1243)
101 PRK09038 flagellar motor prote 20.9 1.3E+02 0.0027 29.4 4.0 27 97-123 12-38 (281)
102 COG2960 Uncharacterized protei 20.7 1.5E+02 0.0032 25.6 3.9 19 203-221 48-66 (103)
103 PRK04406 hypothetical protein; 20.6 2.7E+02 0.0059 22.3 5.2 11 146-156 9-19 (75)
104 COG1792 MreC Cell shape-determ 20.5 6.7E+02 0.015 24.6 9.0 62 142-203 43-107 (284)
105 PF11594 Med28: Mediator compl 20.5 2.3E+02 0.005 24.6 5.0 33 173-205 38-75 (106)
No 1
>KOG2687 consensus Spindle pole body protein, contains UNC-84 domain [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6e-39 Score=318.38 Aligned_cols=286 Identities=31% Similarity=0.489 Sum_probs=218.4
Q ss_pred ccCCCCCcccccccccccc----ccchhhhhcC----CCCCCC-cccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 044738 51 AQSKDLSRHSIRGEAVVDK----DTLVQVKKSG----LANSTV-SPRRSRKSSPKPEKPRWATVVSIFTKNFLLLVAVLG 121 (347)
Q Consensus 51 ~~~~d~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~-~~~~~~k~~~k~~~~~W~~~~sv~~k~~~l~~~~~~ 121 (347)
+..+|| |+| +...+ |.++++++++ +.|++. ++++.++...++...+|+++++++++...-++.++|
T Consensus 12 ~~~~~l----~~~-t~~~~~~~~~~~~~~l~s~~~~~g~~~g~~~~~t~~~~~~~~~~g~~~~~~~~~a~~~~~l~~~~~ 86 (414)
T KOG2687|consen 12 GSQEDL----ING-TANRRHESADLGPVTLRSGSFGTGENTGLTQRRTSKKEMWLSWLGRWKTVVRTFAAPKGALLALVG 86 (414)
T ss_pred cccccc----ccc-hhhcccccccccchhccccccccCCCcceeeccccccccchhhcCceeEEEEEeccchhHHHHHHH
Confidence 335555 788 66554 8999998888 445444 788889999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCc------CcccchhhhhhhHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHhhhhhcc---------
Q 044738 122 LGQMIRRVYLKSGDSA------GAELGFSEFERRITEVENFLKTTT-KMMQLQVEVLDRKVESEMGGLRRE--------- 185 (347)
Q Consensus 122 l~~~~~~~~~k~~~~~------~~~~~~~e~e~Ri~~~E~~l~klt-k~~~vQ~E~~~~kLe~E~~~lr~e--------- 185 (347)
+.|+.+....|..+.+ ...+.+.+.++ +.++...+ .++++|.+++|...+.|+..+|..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s-----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~lrq~~~~~~l~~~ 161 (414)
T KOG2687|consen 87 LAQLYRKARLKASSGSSHNSEGSTLMKDSNWES-----ESFFVHNTRSLLRVQRQLLDKQQDSEVLALRQLQIESVLALL 161 (414)
T ss_pred HHHHHhhhhccccCCcccCcchhhhhhhccccc-----chHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHh
Confidence 9999998877775431 12344445555 55555545 888899998888888888888885
Q ss_pred -hhhHHHHHhHHhHHHHHHHhhhccCcCHH-HHHHHHHHHHhcccCCCCCCCC-ChhHHHHHHHHHHHHHHHHHhcCCCC
Q 044738 186 -RELKKLEEKSEGLERTLSELKAVDWLSKE-EFEKFFEEFKKQKSGELSENDV-SLDDIRVYAREIVEKEIEKHAADGLG 262 (347)
Q Consensus 186 -~~i~~v~aq~d~Le~lL~~l~s~~~vsK~-E~~kll~~ikni~s~e~s~~~~-~ld~v~~~~~~iV~~aL~~y~aD~tg 262 (347)
.+++.+.+....++....++.....+.|+ |+...+...+.....+.+-..+ ..+.+.+.++++++.++++|++|+++
T Consensus 162 ~~~~~~v~~~~~~~~~~~~~~~~~p~~~~d~e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~d~v~ 241 (414)
T KOG2687|consen 162 KSELEKVESELEQLKLWVDEIRAKPLVLRDYEIERAISTLMQDLRGDKAQVMANVIDELSASAEDIAKMEIQRLAEDGVG 241 (414)
T ss_pred hhhhhhhccccccccccccccccchhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhhhhHHHHHHHHHHHHHHhccccC
Confidence 33344444444344444445444456676 7777666664322222111122 25677888999999999999999999
Q ss_pred CccccccCCCCeEE-ecCCCccCCCCCcccccccCCCccccccccccCCCCCCCccccccCCeeEEEEEecCceeeeEEE
Q 044738 263 RVDYALATSGAFVI-KHSDAYLAGKGSNWLSLSSRNGVHSYADKMLKPSFGEPGQCFPLKGSSGFVQIKLRTAIIPEAIT 341 (347)
Q Consensus 263 ~vDYAL~S~GA~VI-~tS~TY~~~~~~~w~s~~~~~~~~~~P~~aLqP~~~~PG~CWAF~GS~G~L~I~La~~I~ptaVT 341 (347)
+|||||+|.||+|+ .||++|..++...|+..++++.++.+|.++|+|++ +||+||+|+|++||++|+|+++|+|++||
T Consensus 242 ~~DYAl~s~GAsI~~~~S~~y~~~~~~~~~~~i~~~~~~~~P~vil~~~v-~PG~Cw~FkGsrg~v~V~La~~Iip~avT 320 (414)
T KOG2687|consen 242 KVDYALESGGASIDSECSETYKSDKALLFWNGISLWNHHQPPRVILQPNV-SPGECWAFKGSRGYVTVRLARFIIPSAVT 320 (414)
T ss_pred cchhhhhcCCcEEEeecccccccCCcceEeeccccccccCCCceEecCCC-CccceeeecCCceEEEEEecceEEeeeee
Confidence 99999999999999 68999998887555545555678899999999999 99999999999999999999999999999
Q ss_pred EeecCC
Q 044738 342 LEHVAK 347 (347)
Q Consensus 342 LEHIpK 347 (347)
||||||
T Consensus 321 leHv~~ 326 (414)
T KOG2687|consen 321 LEHVPK 326 (414)
T ss_pred eecccc
Confidence 999986
No 2
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=99.28 E-value=1.7e-12 Score=110.53 Aligned_cols=47 Identities=34% Similarity=0.747 Sum_probs=36.2
Q ss_pred cccccccccCC---CCCCCccccccCCeeEEEEEecCceeeeEEEEeecCC
Q 044738 300 HSYADKMLKPS---FGEPGQCFPLKGSSGFVQIKLRTAIIPEAITLEHVAK 347 (347)
Q Consensus 300 ~~~P~~aLqP~---~~~PG~CWAF~GS~G~L~I~La~~I~ptaVTLEHIpK 347 (347)
..+|..||+|+ . .||+||+|+|++|+|+|+|+++|+|++|||+|+++
T Consensus 5 ~~~p~~il~~~~~~~-~~g~Cw~~~g~~~~~~I~L~~~I~v~~v~i~h~~~ 54 (135)
T PF07738_consen 5 AKPPSNILSPDKDSY-MPGPCWAFEGSKGWLTIELSEPIYVTSVTIEHVEK 54 (135)
T ss_dssp ---GGGGGSS------STT-SEEEETT-EEEEEEEEEEEEEEEEEEE---G
T ss_pred cCChhheECCCCCcc-cCCccCccCCCceEEEEEcCCcEEEEEEEEEEecc
Confidence 46899999999 8 99999999999999999999999999999999873
No 3
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=81.22 E-value=6.3 Score=33.17 Aligned_cols=52 Identities=29% Similarity=0.483 Sum_probs=25.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcchhhHHHHHhHHhHHHHHHH
Q 044738 145 EFERRITEVENFLKTTTKMMQLQVEVLDRKVESEMGGLRRERELKKLEEKSEGLERTLSE 204 (347)
Q Consensus 145 e~e~Ri~~~E~~l~kltk~~~vQ~E~~~~kLe~E~~~lr~e~~i~~v~aq~d~Le~lL~~ 204 (347)
+++.|++.+|.-++.+=. +.++ .+|+.++..+|.+ ++.+.++.+.++..+.-
T Consensus 46 ~~~~Rl~~lE~~l~~LPt----~~dv--~~L~l~l~el~G~--~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPT----RDDV--HDLQLELAELRGE--LKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHHHhCCC----HHHH--HHHHHHHHHHHhH--HHHHHHHHHHHHHHHHH
Confidence 556666666655333311 1222 3366677777654 44455555544444443
No 4
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=80.52 E-value=3.1 Score=38.52 Aligned_cols=53 Identities=23% Similarity=0.460 Sum_probs=40.4
Q ss_pred HhhhccCcCHHHHHHHHHHHHhcccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 044738 204 ELKAVDWLSKEEFEKFFEEFKKQKSGELSENDVSLDDIRVYAREIVEKEIEKHAADGLGRVDY 266 (347)
Q Consensus 204 ~l~s~~~vsK~E~~kll~~ikni~s~e~s~~~~~ld~v~~~~~~iV~~aL~~y~aD~tg~vDY 266 (347)
+++..|+++|+|+..++..+-.... +...++...|++..++.++.|+.|+.+|
T Consensus 114 D~~~~G~I~reel~~iv~~~~~~~~----------~~~~e~~~~i~d~t~~e~D~d~DG~Isf 166 (187)
T KOG0034|consen 114 DLDGDGFISREELKQILRMMVGEND----------DMSDEQLEDIVDKTFEEADTDGDGKISF 166 (187)
T ss_pred cCCCCCcCcHHHHHHHHHHHHccCC----------cchHHHHHHHHHHHHHHhCCCCCCcCcH
Confidence 3578899999999999987752100 1133455689999999999999999886
No 5
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=77.73 E-value=3.5 Score=30.14 Aligned_cols=48 Identities=23% Similarity=0.507 Sum_probs=35.9
Q ss_pred hhccCcCHHHHHHHHHHHHhcccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 044738 206 KAVDWLSKEEFEKFFEEFKKQKSGELSENDVSLDDIRVYAREIVEKEIEKHAADGLGRVDY 266 (347)
Q Consensus 206 ~s~~~vsK~E~~kll~~ikni~s~e~s~~~~~ld~v~~~~~~iV~~aL~~y~aD~tg~vDY 266 (347)
...|+++++||..++..+.. ... ...++.+++..++.++.|+.|.++|
T Consensus 12 d~~G~i~~~el~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~D~d~dG~i~~ 59 (66)
T PF13499_consen 12 DGDGYISKEELRRALKHLGR---------DMS----DEESDEMIDQIFREFDTDGDGRISF 59 (66)
T ss_dssp TSSSEEEHHHHHHHHHHTTS---------HST----HHHHHHHHHHHHHHHTTTSSSSEEH
T ss_pred CccCCCCHHHHHHHHHHhcc---------ccc----HHHHHHHHHHHHHHhCCCCcCCCcH
Confidence 35689999999999885531 111 3345568888899999999999987
No 6
>PRK09039 hypothetical protein; Validated
Probab=76.06 E-value=72 Score=32.04 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=7.1
Q ss_pred CcchHHHHHHH
Q 044738 99 KPRWATVVSIF 109 (347)
Q Consensus 99 ~~~W~~~~sv~ 109 (347)
-|-|.-+|+.+
T Consensus 16 wpg~vd~~~~l 26 (343)
T PRK09039 16 WPGFVDALSTL 26 (343)
T ss_pred CchHHHHHHHH
Confidence 66666666655
No 7
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=72.08 E-value=71 Score=28.28 Aligned_cols=60 Identities=23% Similarity=0.325 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhHHHHHHhhhhhcc--hhhHHHHHhHHh-HHHHHHHhhhccCcCHHHHHHHHHHHH
Q 044738 162 KMMQLQVEVLDRKVESEMGGLRRE--RELKKLEEKSEG-LERTLSELKAVDWLSKEEFEKFFEEFK 224 (347)
Q Consensus 162 k~~~vQ~E~~~~kLe~E~~~lr~e--~~i~~v~aq~d~-Le~lL~~l~s~~~vsK~E~~kll~~ik 224 (347)
+....|.+.+..+++..++.++.. ....+|+...|. +...|..| |..|+.|++.|...|.
T Consensus 57 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rL---gvPs~~dv~~L~~rId 119 (132)
T PF05597_consen 57 KKAEEQVEEARDQVKSRVDDVKERATGQWDKLEQAFDERVARALNRL---GVPSRKDVEALSARID 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence 333444444445555666666655 445556655443 55666655 7889999999887664
No 8
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=68.12 E-value=11 Score=34.80 Aligned_cols=86 Identities=20% Similarity=0.167 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhhcC--CCCcCcccchhhhhhhHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHhhhhhcc--hhhH
Q 044738 116 LVAVLGLGQMIRRVYLKS--GDSAGAELGFSEFERRITEVENFLKTTTKMMQLQVEV--LDRKVESEMGGLRRE--RELK 189 (347)
Q Consensus 116 ~~~~~~l~~~~~~~~~k~--~~~~~~~~~~~e~e~Ri~~~E~~l~kltk~~~vQ~E~--~~~kLe~E~~~lr~e--~~i~ 189 (347)
+.-.+|+.--+. |..+. ..+..+|..++-...|+ +-++ -...=.-|+|.|+ .-.||...++..++| .+|+
T Consensus 55 ~Yg~lYlYERLt-WT~~AKER~fK~Qfv~hAt~KLr~--iv~~-tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~ 130 (171)
T PF04799_consen 55 LYGGLYLYERLT-WTNKAKERAFKRQFVDHATEKLRL--IVSF-TSANCSHQVQQELSSTFARLCQQVDQTKNELEDEIK 130 (171)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHH--HHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445554433 44444 44566666655433333 2222 1111344666666 345566666666655 5556
Q ss_pred HHHHhHHhHHHHHHHh
Q 044738 190 KLEEKSEGLERTLSEL 205 (347)
Q Consensus 190 ~v~aq~d~Le~lL~~l 205 (347)
++..+++.||.+...+
T Consensus 131 ~L~~~i~~le~~~~~~ 146 (171)
T PF04799_consen 131 QLEKEIQRLEEIQSKS 146 (171)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666665555555544
No 9
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=66.01 E-value=1.4e+02 Score=32.52 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=29.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcchhhHHHHHhHHhHHHHHHHh
Q 044738 145 EFERRITEVENFLKTTTKMMQLQVEVLDRKVESEMGGLRRERELKKLEEKSEGLERTLSEL 205 (347)
Q Consensus 145 e~e~Ri~~~E~~l~kltk~~~vQ~E~~~~kLe~E~~~lr~e~~i~~v~aq~d~Le~lL~~l 205 (347)
+...|....+.....+ +....|.....+.++..++.|.. ++.....|...|+..+++|
T Consensus 354 ~l~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~l~~le~--~l~~~~~~~~~L~~~~~~l 411 (656)
T PRK06975 354 ELVQRQQANDAQTAEL-RVKTEQAQASVHQLDSQFAQLDG--KLADAQSAQQALEQQYQDL 411 (656)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444 33222332333445555554443 4445666677777777766
No 10
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=65.99 E-value=70 Score=30.64 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=14.2
Q ss_pred hhhccCcCHHHHHHHHHHH
Q 044738 205 LKAVDWLSKEEFEKFFEEF 223 (347)
Q Consensus 205 l~s~~~vsK~E~~kll~~i 223 (347)
|...|.+|+.|++..-.++
T Consensus 137 L~~~g~is~~~~~~a~~~~ 155 (334)
T TIGR00998 137 LFKKGLISREELDHARKAL 155 (334)
T ss_pred HHHCCCcCHHHHHHHHHHH
Confidence 3457899999998776655
No 11
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=65.02 E-value=74 Score=28.25 Aligned_cols=52 Identities=37% Similarity=0.508 Sum_probs=30.1
Q ss_pred hHHHHHHhhhhhcc-------hhhHHHHHhHHhHHHHHHHhhhc-cCcCHHHHHHHHHHH
Q 044738 172 DRKVESEMGGLRRE-------RELKKLEEKSEGLERTLSELKAV-DWLSKEEFEKFFEEF 223 (347)
Q Consensus 172 ~~kLe~E~~~lr~e-------~~i~~v~aq~d~Le~lL~~l~s~-~~vsK~E~~kll~~i 223 (347)
.+.|+.|+..|++. ..+..+.++...|+.-|..|++. ..|+.+|+.++....
T Consensus 95 ~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~ 154 (169)
T PF07106_consen 95 VKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEY 154 (169)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 35588888888888 33455555566666666655432 234555555554443
No 12
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=64.98 E-value=46 Score=32.07 Aligned_cols=71 Identities=23% Similarity=0.381 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcCcccchhhhhhhHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHhhhhh
Q 044738 107 SIFTKNFLLLVAVLGLGQMIRRVYLKSGDSAGAELGFSEFERRITEVENFLKTTTKM---MQLQVEVLDRKVESEMGGLR 183 (347)
Q Consensus 107 sv~~k~~~l~~~~~~l~~~~~~~~~k~~~~~~~~~~~~e~e~Ri~~~E~~l~kltk~---~~vQ~E~~~~kLe~E~~~lr 183 (347)
|.|.+.++.+.+|+|.. .-|-++-+.|-. | ......+.|+..+|..+..-... ++-|++. |..|+..||
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~~~~a~a~v~--~-~~~~~~~~r~~~le~~~~~~~~~~~~l~~ql~~----lq~ev~~Lr 74 (263)
T PRK10803 3 SNFRHHLLSLSLLVGVA-APWAAFAQAPIS--S-VGSGSVEDRVTQLERISNAHSQLLTQLQQQLSD----NQSDIDSLR 74 (263)
T ss_pred chhHHHHHHHHHHHHHh-hhHHHhcCCcHH--H-cCCCchHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHHh
Confidence 34555555555666532 224444344221 1 11224589999998886544422 2334455 999999999
Q ss_pred cc
Q 044738 184 RE 185 (347)
Q Consensus 184 ~e 185 (347)
..
T Consensus 75 G~ 76 (263)
T PRK10803 75 GQ 76 (263)
T ss_pred hH
Confidence 87
No 13
>TIGR02961 allantoicase allantoicase. A different but similarly named enzyme, allantoate amidohydrolase (EC 3.5.3.9), simultaneously breaks down the urea to ammonia and carbon dioxide.
Probab=64.96 E-value=16 Score=36.96 Aligned_cols=64 Identities=27% Similarity=0.424 Sum_probs=39.6
Q ss_pred CCccccccCCCCeEEecCCCccCCCCCcccccccCCCccccccccccCCCC-CCCcccc-----ccCCeeEEEEEecCce
Q 044738 262 GRVDYALATSGAFVIKHSDAYLAGKGSNWLSLSSRNGVHSYADKMLKPSFG-EPGQCFP-----LKGSSGFVQIKLRTAI 335 (347)
Q Consensus 262 g~vDYAL~S~GA~VI~tS~TY~~~~~~~w~s~~~~~~~~~~P~~aLqP~~~-~PG~CWA-----F~GS~G~L~I~La~~I 335 (347)
+.+|.|....||+|+-||.-|. +. |+.+|.|..+ .-|+=|- -+|. -++.|+|..|-
T Consensus 171 ~~~DLaa~~nGg~vl~~sD~~f-g~----------------~~Nli~pg~~~~mgDGWETrRrR~pG~-DW~IvkLg~~G 232 (322)
T TIGR02961 171 ETVDLAALENGGVVVACSDAHF-GH----------------PDNLIGPGRGRNMGDGWETARRRDPGN-DWAIVRLGAPG 232 (322)
T ss_pred cccceeecccCCEEEEeccccc-CC----------------HHHccCCCcccccccCcceeeccCCCC-CEEEEEcCCCC
Confidence 4799999999999999998875 22 2222222210 1233331 1222 46788888887
Q ss_pred eeeEEEEe
Q 044738 336 IPEAITLE 343 (347)
Q Consensus 336 ~ptaVTLE 343 (347)
+|..|.|+
T Consensus 233 ~I~~i~VD 240 (322)
T TIGR02961 233 EIERIEVD 240 (322)
T ss_pred eEEEEEEe
Confidence 77777765
No 14
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=62.04 E-value=1.7e+02 Score=29.67 Aligned_cols=10 Identities=30% Similarity=0.033 Sum_probs=5.0
Q ss_pred HHHHHHHHHh
Q 044738 120 LGLGQMIRRV 129 (347)
Q Consensus 120 ~~l~~~~~~~ 129 (347)
++++=-.|.|
T Consensus 41 ~alg~~~~~~ 50 (372)
T PF04375_consen 41 LALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHH
Confidence 4444445555
No 15
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=59.04 E-value=48 Score=31.58 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=22.7
Q ss_pred hHHHHHHhhhhhcc-hhhHHHHHhHHhHHHHHHH
Q 044738 172 DRKVESEMGGLRRE-RELKKLEEKSEGLERTLSE 204 (347)
Q Consensus 172 ~~kLe~E~~~lr~e-~~i~~v~aq~d~Le~lL~~ 204 (347)
.++|+.|+..|+.+ .+++.+.++-+.|+.+|.-
T Consensus 78 n~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 78 NEELKKELLELESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35577777777777 5566777777777776653
No 16
>PF11374 DUF3176: Protein of unknown function (DUF3176); InterPro: IPR021514 This eukaryotic family of proteins has no known function.
Probab=56.02 E-value=19 Score=30.73 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 044738 102 WATVVSIFTKNFLLLVAVLGLGQMIRRVYLKSG 134 (347)
Q Consensus 102 W~~~~sv~~k~~~l~~~~~~l~~~~~~~~~k~~ 134 (347)
|--+++.++|-+++..+--+++|+.|.|+.+.+
T Consensus 25 ~isilsti~~a~l~~~v~~~l~QlkW~~f~~~~ 57 (111)
T PF11374_consen 25 LISILSTIAKAALLFPVSEGLSQLKWNWFSRRP 57 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 666889999989999999999999999987443
No 17
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=54.07 E-value=85 Score=30.16 Aligned_cols=80 Identities=20% Similarity=0.330 Sum_probs=48.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH-H-HHHHhhHHHHHHhhhhhcc-----hhhHHHHHhHHhHHHHHHHhhhccCcCHHH
Q 044738 143 FSEFERRITEVENFLKTTTKMMQ-L-QVEVLDRKVESEMGGLRRE-----RELKKLEEKSEGLERTLSELKAVDWLSKEE 215 (347)
Q Consensus 143 ~~e~e~Ri~~~E~~l~kltk~~~-v-Q~E~~~~kLe~E~~~lr~e-----~~i~~v~aq~d~Le~lL~~l~s~~~vsK~E 215 (347)
+++.-.+..+||.+...+..... . +.+.....+++|+..|..| .+|..+.+.++.||.++...+++.-=.++.
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777766555553322 2 3333556688888888888 445666777888888888875554434444
Q ss_pred HHHHHHH
Q 044738 216 FEKFFEE 222 (347)
Q Consensus 216 ~~kll~~ 222 (347)
+..+.++
T Consensus 83 i~r~~ee 89 (230)
T PF10146_consen 83 IQRLYEE 89 (230)
T ss_pred HHHHHHH
Confidence 4444433
No 18
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=52.57 E-value=69 Score=30.18 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=10.4
Q ss_pred hhhHHHHHhHHhHHHHHHHh
Q 044738 186 RELKKLEEKSEGLERTLSEL 205 (347)
Q Consensus 186 ~~i~~v~aq~d~Le~lL~~l 205 (347)
..|.+|..++|.|+.-|...
T Consensus 197 ~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 197 RRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555544
No 19
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=51.87 E-value=1.1e+02 Score=28.90 Aligned_cols=62 Identities=27% Similarity=0.456 Sum_probs=36.4
Q ss_pred hhhhhhhHHHHHHHHHH----H---HHHHHHHHHHhhHHHHHHhhhhhcc------------hhhHHHHHhHHhHHHHHH
Q 044738 143 FSEFERRITEVENFLKT----T---TKMMQLQVEVLDRKVESEMGGLRRE------------RELKKLEEKSEGLERTLS 203 (347)
Q Consensus 143 ~~e~e~Ri~~~E~~l~k----l---tk~~~vQ~E~~~~kLe~E~~~lr~e------------~~i~~v~aq~d~Le~lL~ 203 (347)
++++|.+|+.+|.-... . ..+.+.|.|-+-+=-+.++..++.. -.|+.|+.|.+.|+..|+
T Consensus 105 La~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 105 LAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred HHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666655433 0 1233445555444445666666422 336789999999999887
Q ss_pred H
Q 044738 204 E 204 (347)
Q Consensus 204 ~ 204 (347)
.
T Consensus 185 ~ 185 (195)
T PF12761_consen 185 S 185 (195)
T ss_pred H
Confidence 6
No 20
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=50.92 E-value=30 Score=37.05 Aligned_cols=64 Identities=19% Similarity=0.181 Sum_probs=40.8
Q ss_pred CCccccccCCCCeEEecCCCccCCCCCcccccccCCCccccccccccCCC-CCCCcccc-----ccCCeeEEEEEecCce
Q 044738 262 GRVDYALATSGAFVIKHSDAYLAGKGSNWLSLSSRNGVHSYADKMLKPSF-GEPGQCFP-----LKGSSGFVQIKLRTAI 335 (347)
Q Consensus 262 g~vDYAL~S~GA~VI~tS~TY~~~~~~~w~s~~~~~~~~~~P~~aLqP~~-~~PG~CWA-----F~GS~G~L~I~La~~I 335 (347)
+.+|.|....||+|+.||.-|. +. |+.+|.|.. ..-|+=|- -+| .-++.|+|..|-
T Consensus 183 ~~~dLa~~~nGg~v~~~sD~~f-g~----------------~~nli~pg~~~~mgDGWETrRrR~pg-~Dw~iv~Lg~~G 244 (516)
T PRK13797 183 VTSDLAAAYLGGVVVAASDMHY-GD----------------RHNLNASGDARAMGEGWETRRRRGPG-HDWAVVRLATQG 244 (516)
T ss_pred cccchhhhccCCEEEEeccccc-CC----------------HHHccCCCCcccccccccccccCCCC-CCEEEEEeCCCC
Confidence 4589999999999999998875 22 222222221 02244441 122 246788888888
Q ss_pred eeeEEEEe
Q 044738 336 IPEAITLE 343 (347)
Q Consensus 336 ~ptaVTLE 343 (347)
+|..|.|+
T Consensus 245 ~I~~v~vD 252 (516)
T PRK13797 245 TIVRAEVD 252 (516)
T ss_pred EEEEEEEe
Confidence 88888776
No 21
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=49.56 E-value=1.2e+02 Score=28.93 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=23.3
Q ss_pred hHHHHHhHHhHHHHHHHhhhccCcCHHHHHHHHHHHHh
Q 044738 188 LKKLEEKSEGLERTLSELKAVDWLSKEEFEKFFEEFKK 225 (347)
Q Consensus 188 i~~v~aq~d~Le~lL~~l~s~~~vsK~E~~kll~~ikn 225 (347)
++.+++|.+.++..+..| --+.-++.|+-.++.++-.
T Consensus 75 L~~lr~Ql~emee~~~~l-lrQLPs~tEmp~Ll~dv~q 111 (211)
T COG3167 75 LEALRAQLAEMEERFDIL-LRQLPSDTEMPNLLADVNQ 111 (211)
T ss_pred hHHHHHHHHHHHHHHHHH-HHhCCcccchhHHHHHHHH
Confidence 344666655555544444 3345788899999988853
No 22
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=49.29 E-value=1.4e+02 Score=26.97 Aligned_cols=27 Identities=37% Similarity=0.762 Sum_probs=17.6
Q ss_pred hHHHHHHhhhhhcc-----hhhHHHHHhHHhH
Q 044738 172 DRKVESEMGGLRRE-----RELKKLEEKSEGL 198 (347)
Q Consensus 172 ~~kLe~E~~~lr~e-----~~i~~v~aq~d~L 198 (347)
..+.+.|+..++.+ .+++.++.|.+.|
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777766 5566777777654
No 23
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=48.95 E-value=1.6e+02 Score=24.73 Aligned_cols=41 Identities=29% Similarity=0.347 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCcCcccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044738 113 FLLLVAVLGLGQMIRRVYLKSGDSAGAELGFSEFERRITEVENFLKTTTKMMQLQVEV 170 (347)
Q Consensus 113 ~~l~~~~~~l~~~~~~~~~k~~~~~~~~~~~~e~e~Ri~~~E~~l~kltk~~~vQ~E~ 170 (347)
.+|.++++||+-.+|. +-.+|+.+..-.+..++..+-|.++
T Consensus 7 ~~l~~lvl~L~~~l~~-----------------qs~~i~~L~a~n~~q~~tI~qq~~~ 47 (110)
T PF10828_consen 7 IALAVLVLGLGGWLWY-----------------QSQRIDRLRAENKAQAQTIQQQEDA 47 (110)
T ss_pred HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777774 1235566665555555555555444
No 24
>PRK13257 allantoicase; Provisional
Probab=48.24 E-value=35 Score=34.71 Aligned_cols=25 Identities=24% Similarity=0.090 Sum_probs=21.8
Q ss_pred CCCCCccccccCCCCeEEecCCCcc
Q 044738 259 DGLGRVDYALATSGAFVIKHSDAYL 283 (347)
Q Consensus 259 D~tg~vDYAL~S~GA~VI~tS~TY~ 283 (347)
+.++.+|.|....||+|+-||.-|.
T Consensus 13 ~~~~~~dLas~~~Gg~vl~~sDe~F 37 (336)
T PRK13257 13 FFRRYPNLADRRLGAQVLAASDEFF 37 (336)
T ss_pred hhhcccceehhhcCCEEEEEchhhh
Confidence 4567899999999999999998775
No 25
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=47.77 E-value=51 Score=25.50 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=34.4
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcc
Q 044738 142 GFSEFERRITEVENFLKTTTKMMQLQVEVLDRKVESEMGGLRRE 185 (347)
Q Consensus 142 ~~~e~e~Ri~~~E~~l~kltk~~~vQ~E~~~~kLe~E~~~lr~e 185 (347)
.+.+++.||-.||..+++..+.-..+-+. .+|||.=+..||+.
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~-i~RLE~H~ETlRk~ 44 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEA-IKRLEHHIETLRKY 44 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHH
Confidence 45688999999999888888776666665 56789888899887
No 26
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.68 E-value=2.9e+02 Score=30.63 Aligned_cols=67 Identities=34% Similarity=0.480 Sum_probs=37.3
Q ss_pred hHHHHHHhhhhhcc--------hhhHHHHHhHHhHHHHHHHhhhccCcCHHHHHHHHHHHHhcccCCCCCCCCChhHHH
Q 044738 172 DRKVESEMGGLRRE--------RELKKLEEKSEGLERTLSELKAVDWLSKEEFEKFFEEFKKQKSGELSENDVSLDDIR 242 (347)
Q Consensus 172 ~~kLe~E~~~lr~e--------~~i~~v~aq~d~Le~lL~~l~s~~~vsK~E~~kll~~ikni~s~e~s~~~~~ld~v~ 242 (347)
..+|+.|+..++.+ .+++..+..++.|+.-|.+-+ -..+++..=+.+++.+...+.++....+..++
T Consensus 452 ie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~----~~ve~L~~~l~~l~k~~~lE~sG~g~pvk~ve 526 (652)
T COG2433 452 IEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKK----KRVEELERKLAELRKMRKLELSGKGTPVKVVE 526 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhcCCCcceehhh
Confidence 45566666666665 445566677777877777632 23455555555555444444444434333343
No 27
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=47.57 E-value=2.8e+02 Score=27.08 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=14.9
Q ss_pred hhhccCcCHHHHHHHHHHHH
Q 044738 205 LKAVDWLSKEEFEKFFEEFK 224 (347)
Q Consensus 205 l~s~~~vsK~E~~kll~~ik 224 (347)
|...+++|+.||+..-.++.
T Consensus 143 L~~~g~vS~~~~~~a~~~~~ 162 (346)
T PRK10476 143 LLAKGYVSAQQVDQARTAQR 162 (346)
T ss_pred HHHCCCcCHHHHHHHHHHHH
Confidence 34578999999988766553
No 28
>PF06401 Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-terminal domain ; InterPro: IPR010483 The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family. The protein inhibits binding of all currently known ligands of these receptors []. Two different studies have provided conflicting domain boundaries.; GO: 0008201 heparin binding, 0050750 low-density lipoprotein particle receptor binding, 0005783 endoplasmic reticulum; PDB: 2FCW_A 2P03_A 2FTU_A 2P01_A.
Probab=47.51 E-value=60 Score=31.12 Aligned_cols=74 Identities=16% Similarity=0.342 Sum_probs=36.5
Q ss_pred HHHHHHhhhcCCCCcCc-ccchh----hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHhhh----hhcc---hhh
Q 044738 123 GQMIRRVYLKSGDSAGA-ELGFS----EFERRITEVENFLKTTTKMMQLQVEVLDRKVE--SEMGG----LRRE---REL 188 (347)
Q Consensus 123 ~~~~~~~~~k~~~~~~~-~~~~~----e~e~Ri~~~E~~l~kltk~~~vQ~E~~~~kLe--~E~~~----lr~e---~~i 188 (347)
+|.+|++| +++.+..| ..++. -||.||-.+.-+ +.|+++...+++ .+++. -|+- ..+
T Consensus 114 V~~LW~~A-~~~nFT~~ELeSlkeEL~HfE~rl~K~~H~--------~~el~~~~~k~~~ve~~g~~~~~~~~~e~~~~l 184 (214)
T PF06401_consen 114 VQGLWKLA-QNANFTEDELESLKEELKHFEKRLEKHRHY--------QEELELSHEKLKHVESLGDEEHFDRKSEKYKTL 184 (214)
T ss_dssp HHHHHHHH-CTTT--HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHTTSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhhhhcCcHHHhhhhHHHHHHH
Confidence 46789888 46666554 55554 344444443333 444554444444 22221 1111 222
Q ss_pred -HHHHHhHHhHHHHHHHh
Q 044738 189 -KKLEEKSEGLERTLSEL 205 (347)
Q Consensus 189 -~~v~aq~d~Le~lL~~l 205 (347)
++++.++-.++++.++|
T Consensus 185 eek~Kk~~~KV~Kl~~dL 202 (214)
T PF06401_consen 185 EEKIKKLGRKVKKLHQDL 202 (214)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 45666677777777766
No 29
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=46.89 E-value=1e+02 Score=24.87 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=36.1
Q ss_pred HHhHHhHHHHHHHhhh----ccCcCHHHHHHHHHHHHhcccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 044738 192 EEKSEGLERTLSELKA----VDWLSKEEFEKFFEEFKKQKSGELSENDVSLDDIRVYAREIVEKEIEKHAADGLGRVDYA 267 (347)
Q Consensus 192 ~aq~d~Le~lL~~l~s----~~~vsK~E~~kll~~ikni~s~e~s~~~~~ld~v~~~~~~iV~~aL~~y~aD~tg~vDYA 267 (347)
+.....+=.+...+-. .|+++++||..++.+..+. +...+.+++. ++ ++..+.|+.|++||.
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~l------g~k~t~~ev~----~m----~~~~D~d~dG~Idf~ 71 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTI------GSKLQDAEIA----KL----MEDLDRNKDQEVNFQ 71 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhc------CCCCCHHHHH----HH----HHHhcCCCCCCCcHH
Confidence 3344444444555533 4589999999999643221 1122233332 33 556789999999985
No 30
>PRK13257 allantoicase; Provisional
Probab=45.24 E-value=40 Score=34.29 Aligned_cols=62 Identities=24% Similarity=0.406 Sum_probs=39.0
Q ss_pred ccccccCCCCeEEecCCCccCCCCCcccccccCCCccccccccccCCCC-CCCccccc-----cCCeeEEEEEecCceee
Q 044738 264 VDYALATSGAFVIKHSDAYLAGKGSNWLSLSSRNGVHSYADKMLKPSFG-EPGQCFPL-----KGSSGFVQIKLRTAIIP 337 (347)
Q Consensus 264 vDYAL~S~GA~VI~tS~TY~~~~~~~w~s~~~~~~~~~~P~~aLqP~~~-~PG~CWAF-----~GS~G~L~I~La~~I~p 337 (347)
+|.|....||+|+.||.-|. +. |+.+|.|..+ .-|+=|-- +| .-.+.|+|..|-+|
T Consensus 184 iDLaa~~nGg~v~~~SD~hf-g~----------------~~Nll~Pg~~~~mgDGWETrRrR~pG-~DW~iikLg~~G~I 245 (336)
T PRK13257 184 VDLAALENGGRVVACSNQHF-GS----------------PSNLLLPGRGVNMGDGWETRRRREPG-NDWVIVALAAPGVI 245 (336)
T ss_pred cchhhhhcCCEEEEeccccc-CC----------------HHHeeCCCcccccccccccccccCCC-CCEEEEEcCCCCEE
Confidence 89999999999999998875 22 2222223210 12333311 12 24678888888888
Q ss_pred eEEEEe
Q 044738 338 EAITLE 343 (347)
Q Consensus 338 taVTLE 343 (347)
..|.|+
T Consensus 246 ~~ieVD 251 (336)
T PRK13257 246 RKIEVD 251 (336)
T ss_pred EEEEEe
Confidence 877765
No 31
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=44.11 E-value=1.3e+02 Score=28.41 Aligned_cols=70 Identities=16% Similarity=0.342 Sum_probs=43.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcchhhHHHHHhHHhHHHHHHHhhhccCcCHHHHHHHHH
Q 044738 145 EFERRITEVENFLKTTTKMMQLQVEVLDRKVESEMGGLRRERELKKLEEKSEGLERTLSELKAVDWLSKEEFEKFFE 221 (347)
Q Consensus 145 e~e~Ri~~~E~~l~kltk~~~vQ~E~~~~kLe~E~~~lr~e~~i~~v~aq~d~Le~lL~~l~s~~~vsK~E~~kll~ 221 (347)
..|.||+.+|.++-..+-.+..|+|. .+-++.++.+|+.+ +..|+...|.+-.+|. .+--+.+|+-.-++
T Consensus 83 nlE~kvD~lee~fdd~~d~l~~q~eq-~~~~~~~v~~~~q~--~~~l~~K~D~~L~llE----~~~~~~~~~~~~~~ 152 (189)
T TIGR02132 83 NLEEKVDLIEEFFDDKFDELEAQQEQ-APALKKDVTKLKQD--IKSLDKKLDKILELLE----GQQKTQDELKETIQ 152 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-CchHHhHHHHHHHH--HHHHHHHHHHHHHHHh----cCccchhHHHHHHH
Confidence 88999999999998888666667665 33466777776654 3444444444333333 23345555555444
No 32
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=43.49 E-value=57 Score=24.68 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=14.9
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 044738 93 SSPKPEKPRWATVVSIFTKNFLLLVAVLG 121 (347)
Q Consensus 93 ~~~k~~~~~W~~~~sv~~k~~~l~~~~~~ 121 (347)
.......|.|.+..+=++=+++.+|++++
T Consensus 8 ~~~~~~~~~WlvtyaDlmTLLl~fFVlL~ 36 (58)
T PF13677_consen 8 EEEEEGSPRWLVTYADLMTLLLAFFVLLF 36 (58)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 33455678995555444333444444443
No 33
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=43.42 E-value=3.4e+02 Score=29.66 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=30.3
Q ss_pred hhhhhhhHHHHHHHHHHHH-HHHH--HHHHHhhHHHHHHhhhhhcc
Q 044738 143 FSEFERRITEVENFLKTTT-KMMQ--LQVEVLDRKVESEMGGLRRE 185 (347)
Q Consensus 143 ~~e~e~Ri~~~E~~l~klt-k~~~--vQ~E~~~~kLe~E~~~lr~e 185 (347)
+.+=+.-|..||.++.... |+.. .|.|.+-..|..|...||..
T Consensus 389 L~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~ 434 (594)
T PF05667_consen 389 LPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEK 434 (594)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3355667788888877766 4443 46777777888888888865
No 34
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=41.24 E-value=1.1e+02 Score=24.86 Aligned_cols=45 Identities=11% Similarity=0.261 Sum_probs=30.0
Q ss_pred hccCcCHHHHHHHHHH-HHhcccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 044738 207 AVDWLSKEEFEKFFEE-FKKQKSGELSENDVSLDDIRVYAREIVEKEIEKHAADGLGRVDYA 267 (347)
Q Consensus 207 s~~~vsK~E~~kll~~-ikni~s~e~s~~~~~ld~v~~~~~~iV~~aL~~y~aD~tg~vDYA 267 (347)
..|+++++||..++.+ +-+. .+.. .-|++.++..+.|+.|++||.
T Consensus 22 ~~g~i~~~ELk~ll~~elg~~---------ls~~-------~~v~~mi~~~D~d~DG~I~F~ 67 (89)
T cd05022 22 GKESLTASEFQELLTQQLPHL---------LKDV-------EGLEEKMKNLDVNQDSKLSFE 67 (89)
T ss_pred CCCeECHHHHHHHHHHHhhhh---------ccCH-------HHHHHHHHHhCCCCCCCCcHH
Confidence 3578999999999886 4321 1110 124444677899999999985
No 35
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=40.77 E-value=71 Score=27.25 Aligned_cols=45 Identities=31% Similarity=0.447 Sum_probs=30.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH-H---HH--HHhhHHHHHHhhhhhcchhh
Q 044738 144 SEFERRITEVENFLKTTTKMMQ-L---QV--EVLDRKVESEMGGLRREREL 188 (347)
Q Consensus 144 ~e~e~Ri~~~E~~l~kltk~~~-v---Q~--E~~~~kLe~E~~~lr~e~~i 188 (347)
+|+|.||..||+==++....+. + |. |.+.+||+.-+..++.|.++
T Consensus 7 ~e~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~reRe~ 57 (98)
T PF11166_consen 7 HEHEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINREREE 57 (98)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHHHHH
Confidence 4999999999976444442222 2 33 44678888888888887554
No 36
>TIGR02961 allantoicase allantoicase. A different but similarly named enzyme, allantoate amidohydrolase (EC 3.5.3.9), simultaneously breaks down the urea to ammonia and carbon dioxide.
Probab=40.41 E-value=54 Score=33.20 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=41.2
Q ss_pred CccccccCCCCeEEecCCCccCCCCCcccccccCCCccccccccccCCCCCCCccccccCC----eeEEEEEecCceeee
Q 044738 263 RVDYALATSGAFVIKHSDAYLAGKGSNWLSLSSRNGVHSYADKMLKPSFGEPGQCFPLKGS----SGFVQIKLRTAIIPE 338 (347)
Q Consensus 263 ~vDYAL~S~GA~VI~tS~TY~~~~~~~w~s~~~~~~~~~~P~~aLqP~~~~PG~CWAF~GS----~G~L~I~La~~I~pt 338 (347)
.+|.|....||+|+-||.-|... +...+... .+. ..|. ...+ .|.-++.|--.=. .=++.|+|..|-+|.
T Consensus 2 ~~dLa~~~~Gg~vl~~sDe~Fa~-~~nLl~p~--~~~-f~~~-~f~~-~G~~~DGWETRRrR~~g~DW~ivkLg~~G~I~ 75 (322)
T TIGR02961 2 LVNLADRRLGGKVLFASDEFFAP-AENLLKPE--APE-FKPG-VFDE-FGKWMDGWETRRKRGAGHDWCIVRLGVPGVIH 75 (322)
T ss_pred ccceehhhcCCEEEEEccchhcC-HHhccCCC--CCc-cccc-cccc-cCccccCccccccCCCCCCEEEEEeCCCcEEE
Confidence 57999999999999999877521 10110000 000 0000 0000 1244566632211 347889999998888
Q ss_pred EEEEe
Q 044738 339 AITLE 343 (347)
Q Consensus 339 aVTLE 343 (347)
.|-|+
T Consensus 76 ~v~vD 80 (322)
T TIGR02961 76 GVDID 80 (322)
T ss_pred EEEEe
Confidence 88765
No 37
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=40.15 E-value=2.5e+02 Score=29.98 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 044738 240 DIRVYAREIVEKEIEKHAADGL 261 (347)
Q Consensus 240 ~v~~~~~~iV~~aL~~y~aD~t 261 (347)
.-...++.|+-.|+++|+.|.+
T Consensus 179 ~a~~~a~~i~~~aiqr~a~~~~ 200 (514)
T TIGR03319 179 EADKKAKEILATAIQRYAGDHV 200 (514)
T ss_pred HHHHHHHHHHHHHHHhccchhh
Confidence 3456789999999999976543
No 38
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=39.69 E-value=1e+02 Score=25.68 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=34.5
Q ss_pred HHHHHHHhh-hccCcCHHHHHHHHHHHHhcccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 044738 198 LERTLSELK-AVDWLSKEEFEKFFEEFKKQKSGELSENDVSLDDIRVYAREIVEKEIEKHAADGLGRVDYA 267 (347)
Q Consensus 198 Le~lL~~l~-s~~~vsK~E~~kll~~ikni~s~e~s~~~~~ld~v~~~~~~iV~~aL~~y~aD~tg~vDYA 267 (347)
|=.....+. ..+.++|.||..|++.- .+..-. +.-+. ..|++.++..+.|+.|.+||-
T Consensus 10 lI~~FhkYaG~~~tLsk~Elk~Ll~~E--lp~~l~--~~~d~--------~~vd~im~~LD~n~Dg~vdF~ 68 (91)
T cd05024 10 MMLTFHKFAGEKNYLNRDDLQKLMEKE--FSEFLK--NQNDP--------MAVDKIMKDLDDCRDGKVGFQ 68 (91)
T ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHH--hHHHHc--CCCCH--------HHHHHHHHHhCCCCCCcCcHH
Confidence 333444431 34569999999999743 222100 11122 245566777899999999983
No 39
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=39.20 E-value=46 Score=30.87 Aligned_cols=11 Identities=36% Similarity=0.625 Sum_probs=4.5
Q ss_pred HHHHhhhhhcc
Q 044738 175 VESEMGGLRRE 185 (347)
Q Consensus 175 Le~E~~~lr~e 185 (347)
||.|+..|.++
T Consensus 125 L~~eI~~L~~~ 135 (171)
T PF04799_consen 125 LEDEIKQLEKE 135 (171)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 40
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=37.35 E-value=4e+02 Score=25.99 Aligned_cols=69 Identities=20% Similarity=0.220 Sum_probs=45.8
Q ss_pred CCCCcchHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhcCCCC---cCc-ccchhhhhhhHHHHHHHHHHHHHHH
Q 044738 96 KPEKPRWATVVSIFTKNF----LLLVAVLGLGQMIRRVYLKSGDS---AGA-ELGFSEFERRITEVENFLKTTTKMM 164 (347)
Q Consensus 96 k~~~~~W~~~~sv~~k~~----~l~~~~~~l~~~~~~~~~k~~~~---~~~-~~~~~e~e~Ri~~~E~~l~kltk~~ 164 (347)
|+..|-|.-+++...|.. .++.+..++.+-+.+++...... +.| =.++..+-.|--++|..++..++.+
T Consensus 18 k~s~P~~~d~v~ka~K~~saL~a~~~A~~~f~Da~qKvad~A~~s~GaSkElG~~Ltri~~~hr~iE~~lk~f~~~L 94 (231)
T cd07643 18 KGSYPLWEDFVSKATKLHSQLRATIVATSAFLDAFQKIADAATNTRGATKEIGSALTRMCMRHKSIETKLKQFTSAL 94 (231)
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999987753 55666677777777665554332 234 3445556666666777777666555
No 41
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=37.05 E-value=54 Score=23.04 Aligned_cols=44 Identities=20% Similarity=0.410 Sum_probs=28.8
Q ss_pred ccCcCHHHHHHHHHHHHhcccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 044738 208 VDWLSKEEFEKFFEEFKKQKSGELSENDVSLDDIRVYAREIVEKEIEKHAADGLGRVDYA 267 (347)
Q Consensus 208 ~~~vsK~E~~kll~~ikni~s~e~s~~~~~ld~v~~~~~~iV~~aL~~y~aD~tg~vDYA 267 (347)
.|.++++||..++..+.- ...+.+ -++..+..++.|+.|+++|.
T Consensus 2 ~G~i~~~~~~~~l~~~g~--------~~~s~~--------e~~~l~~~~D~~~~G~I~~~ 45 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGI--------KDLSEE--------EVDRLFREFDTDGDGYISFD 45 (54)
T ss_dssp SSEEEHHHHHHHHHHTTS--------SSSCHH--------HHHHHHHHHTTSSSSSEEHH
T ss_pred cCEECHHHHHHHHHHhCC--------CCCCHH--------HHHHHHHhcccCCCCCCCHH
Confidence 467899999998853310 002222 24455678999999999874
No 42
>PRK12704 phosphodiesterase; Provisional
Probab=36.66 E-value=3.6e+02 Score=28.80 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Q 044738 240 DIRVYAREIVEKEIEKHAADGLG 262 (347)
Q Consensus 240 ~v~~~~~~iV~~aL~~y~aD~tg 262 (347)
.-+..++.|+-.|+++|+.|.+.
T Consensus 185 ~a~~~a~~i~~~a~qr~a~~~~~ 207 (520)
T PRK12704 185 EADKKAKEILAQAIQRCAADHVA 207 (520)
T ss_pred HHHHHHHHHHHHHHHhhcchhhh
Confidence 44668899999999999876543
No 43
>PRK12705 hypothetical protein; Provisional
Probab=35.24 E-value=6e+02 Score=27.36 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCC
Q 044738 239 DDIRVYAREIVEKEIEKHAADGLG 262 (347)
Q Consensus 239 d~v~~~~~~iV~~aL~~y~aD~tg 262 (347)
+..+..++.++-.++++|+.|.+.
T Consensus 172 ~~a~~~A~~ii~~aiqr~a~~~~~ 195 (508)
T PRK12705 172 LEAERKAQNILAQAMQRIASETAS 195 (508)
T ss_pred HHHHHHHHHHHHHHHHHhccchhh
Confidence 345678899999999999877654
No 44
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=35.22 E-value=2.7e+02 Score=29.94 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Q 044738 111 KNFLLLVAVLGLGQMIRRVYLKS 133 (347)
Q Consensus 111 k~~~l~~~~~~l~~~~~~~~~k~ 133 (347)
|-|+|.++++-..-..|....+.
T Consensus 215 KD~iLv~lili~v~gcw~ay~Qn 237 (575)
T KOG4403|consen 215 KDFILVVLILIGVGGCWFAYRQN 237 (575)
T ss_pred hhHHHHHHHHHHhhhhhhhhhhh
Confidence 33444444444444566433333
No 45
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=35.16 E-value=1.4e+02 Score=23.93 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=36.1
Q ss_pred HhHHhHHHHHHHhh---hcc-CcCHHHHHHHHHHH-HhcccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 044738 193 EKSEGLERTLSELK---AVD-WLSKEEFEKFFEEF-KKQKSGELSENDVSLDDIRVYAREIVEKEIEKHAADGLGRVDYA 267 (347)
Q Consensus 193 aq~d~Le~lL~~l~---s~~-~vsK~E~~kll~~i-kni~s~e~s~~~~~ld~v~~~~~~iV~~aL~~y~aD~tg~vDYA 267 (347)
+-+..|....+.+- ..| .++++||..+++.- .+.. +...+.+ .|++.++.++.|+.|++||.
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~l-----g~~~~~~--------~v~~~i~~~D~n~dG~v~f~ 71 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFL-----EEIKEQE--------VVDKVMETLDSDGDGECDFQ 71 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHh-----cCCCCHH--------HHHHHHHHhCCCCCCcCcHH
Confidence 33444555555552 244 59999999999751 1110 0111222 24444566799999999985
No 46
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=35.07 E-value=1.7e+02 Score=27.49 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=7.9
Q ss_pred hhhhhHHHHHHHHHHHH
Q 044738 145 EFERRITEVENFLKTTT 161 (347)
Q Consensus 145 e~e~Ri~~~E~~l~klt 161 (347)
..++|+.+||.-|+.+.
T Consensus 138 ~~E~ki~eLE~el~~~~ 154 (237)
T PF00261_consen 138 AAESKIKELEEELKSVG 154 (237)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhchhHHHHHHHHHHHH
Confidence 34445555554444443
No 47
>PRK00106 hypothetical protein; Provisional
Probab=34.98 E-value=4.2e+02 Score=28.68 Aligned_cols=23 Identities=9% Similarity=0.247 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Q 044738 240 DIRVYAREIVEKEIEKHAADGLG 262 (347)
Q Consensus 240 ~v~~~~~~iV~~aL~~y~aD~tg 262 (347)
.-+..++.|+-.|+++|+.|.+.
T Consensus 200 ~a~~~a~~ii~~aiqr~a~~~~~ 222 (535)
T PRK00106 200 RSDKMAKDLLAQAMQRLAGEYVT 222 (535)
T ss_pred HHHHHHHHHHHHHHHHhcchhhh
Confidence 44668899999999999776543
No 48
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=34.55 E-value=1.5e+02 Score=24.95 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCcCcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcc
Q 044738 113 FLLLVAVLGLGQMIRRVYLKSGDSAGAELGFSEFERRITEVENFLKTTTKMMQLQVEVLDRKVESEMGGLRRE 185 (347)
Q Consensus 113 ~~l~~~~~~l~~~~~~~~~k~~~~~~~~~~~~e~e~Ri~~~E~~l~kltk~~~vQ~E~~~~kLe~E~~~lr~e 185 (347)
+++++++++|+-.+|. -... +....++..++.+++.-+.++ +.....|+.|+..|+++
T Consensus 6 ~vll~ll~~l~y~l~~---g~~G----~~~~~~l~~q~~~~~~e~~~l--------~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 6 LLLLALLVWLQYSLWF---GKNG----ILDYWRVNDQVAAQQQTNAKL--------KARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHhc---cCCc----HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhCc
Confidence 4455666677777773 1111 233445555555555442222 11123366677777664
No 49
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=34.19 E-value=2.9e+02 Score=27.11 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=14.6
Q ss_pred CCCCCccccccCCCCeEE
Q 044738 259 DGLGRVDYALATSGAFVI 276 (347)
Q Consensus 259 D~tg~vDYAL~S~GA~VI 276 (347)
+...+|||++.--|++.|
T Consensus 103 ~~~~rpD~vI~LP~~~~i 120 (304)
T PF02646_consen 103 GNGLRPDFVIHLPGGRHI 120 (304)
T ss_pred CCCcCceEEEEcCCCCEE
Confidence 667799999998777755
No 50
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.09 E-value=4.5e+02 Score=26.59 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhhhcC
Q 044738 117 VAVLGLGQMIRRVYLKS 133 (347)
Q Consensus 117 ~~~~~l~~~~~~~~~k~ 133 (347)
-+.-|++...++|-++.
T Consensus 95 Gi~y~~y~~~K~YV~P~ 111 (300)
T KOG2629|consen 95 GIAYAAYRFVKSYVLPR 111 (300)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34556777777776554
No 51
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=33.56 E-value=62 Score=25.44 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=32.7
Q ss_pred cccccccCCCCCCCccccc--cCCeeEEEEEecCceeeeEEEEee
Q 044738 302 YADKMLKPSFGEPGQCFPL--KGSSGFVQIKLRTAIIPEAITLEH 344 (347)
Q Consensus 302 ~P~~aLqP~~~~PG~CWAF--~GS~G~L~I~La~~I~ptaVTLEH 344 (347)
+|..++..+ ++.||.- .+...+|.|.|..+..+..|.|..
T Consensus 16 ~~~~~~Dg~---~~t~W~~~~~~~~~~i~idl~~~~~i~~i~i~~ 57 (129)
T PF00754_consen 16 PASNAFDGD---PSTAWCSNWDDSPQWIQIDLGKPYTISGISIQF 57 (129)
T ss_dssp GGGGGGSSS---TTSSEEESSSSSTEEEEEEEEEEEEEEEEEEEE
T ss_pred hHHheEeCC---CCCEEECCCCCCCceEEEEeeeeEecceeeecc
Confidence 366666655 7899955 688889999999999999999864
No 52
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=33.22 E-value=3.6e+02 Score=26.66 Aligned_cols=17 Identities=18% Similarity=0.230 Sum_probs=10.2
Q ss_pred hhhhhHHHHHHHHHHHH
Q 044738 145 EFERRITEVENFLKTTT 161 (347)
Q Consensus 145 e~e~Ri~~~E~~l~klt 161 (347)
=||+|+.-++++...|.
T Consensus 139 WYeWR~~ll~gl~~~L~ 155 (325)
T PF08317_consen 139 WYEWRMQLLEGLKEGLE 155 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36667766666654444
No 53
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.10 E-value=3.2e+02 Score=32.60 Aligned_cols=8 Identities=25% Similarity=0.447 Sum_probs=3.7
Q ss_pred HHHHhhhh
Q 044738 175 VESEMGGL 182 (347)
Q Consensus 175 Le~E~~~l 182 (347)
+++|++.+
T Consensus 870 l~kE~e~~ 877 (1293)
T KOG0996|consen 870 LKKEVEEL 877 (1293)
T ss_pred HHHHHHHH
Confidence 44444444
No 54
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=32.75 E-value=3.3e+02 Score=25.84 Aligned_cols=46 Identities=30% Similarity=0.421 Sum_probs=25.2
Q ss_pred HHHHhhhhhcc---------hhhHHHHHhHHhHHHHHHHhhhccCcCHHHHHHHHHHHH
Q 044738 175 VESEMGGLRRE---------RELKKLEEKSEGLERTLSELKAVDWLSKEEFEKFFEEFK 224 (347)
Q Consensus 175 Le~E~~~lr~e---------~~i~~v~aq~d~Le~lL~~l~s~~~vsK~E~~kll~~ik 224 (347)
--.|+..+|+. ..+++..-+..+|+..|..-... .+|+.++++++-
T Consensus 148 ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kE----n~ELtkICDeLI 202 (207)
T PF05010_consen 148 ANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKE----NEELTKICDELI 202 (207)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 33455555555 22344444466666666653211 367777777764
No 55
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=32.65 E-value=1.6e+02 Score=32.99 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=44.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHhhhhhcc--hhhHHHHHhHHhHHHHHHHh
Q 044738 145 EFERRITEVENFLKTTTKMMQLQVEV--LDRKVESEMGGLRRE--RELKKLEEKSEGLERTLSEL 205 (347)
Q Consensus 145 e~e~Ri~~~E~~l~kltk~~~vQ~E~--~~~kLe~E~~~lr~e--~~i~~v~aq~d~Le~lL~~l 205 (347)
.++.+|.++... -...-+.|+|.|+ +-..+..++.....+ .+|...++|++.+++.+..+
T Consensus 661 ~~~kkLq~~~~~-h~a~cs~qi~~El~~vfa~l~r~v~~~~~~~~d~~~~~~~~le~lds~q~~~ 724 (749)
T KOG0448|consen 661 HLKKKLQEFDDS-HTANCSHQIRQELRTVFAILCRTVDRVEEQMRDDLLATKKQLESLDSIQSRL 724 (749)
T ss_pred HHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777766 1111488999888 457788888877777 66788888888888887765
No 56
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=32.49 E-value=76 Score=34.07 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=21.3
Q ss_pred CCCCCccccccCCCCeEEecCCCcc
Q 044738 259 DGLGRVDYALATSGAFVIKHSDAYL 283 (347)
Q Consensus 259 D~tg~vDYAL~S~GA~VI~tS~TY~ 283 (347)
+-+..+|.|....||+|+-||.-|.
T Consensus 6 ~f~~~~dLa~~~~Gg~v~~~sD~~F 30 (516)
T PRK13797 6 DLTNLVDLAAARFGGTVVAVNDEFF 30 (516)
T ss_pred cccchhhhhhhhcCCEEEEEccchh
Confidence 4466789999999999999998775
No 57
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=32.46 E-value=1.3e+02 Score=23.31 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=14.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Q 044738 144 SEFERRITEVENFLKTTTKMMQLQV 168 (347)
Q Consensus 144 ~e~e~Ri~~~E~~l~kltk~~~vQ~ 168 (347)
.+.|.|++-.|+.+..|......|.
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq 31 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQ 31 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666665444433
No 58
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=30.35 E-value=5.9e+02 Score=27.82 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccccccCCCCeEE
Q 044738 243 VYAREIVEKEIEKHAADGLGRVDYALATSGAFVI 276 (347)
Q Consensus 243 ~~~~~iV~~aL~~y~aD~tg~vDYAL~S~GA~VI 276 (347)
+..+++.+..+.++.+-.+.. +.....++||
T Consensus 386 ~~~~~~Y~~ll~r~~e~~~~~---~~~~~~~~vi 416 (754)
T TIGR01005 386 AAKRQLYESYLTNYRQAASRQ---NYVPVDARVA 416 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHhh---cCCCCCcEEe
Confidence 355677777777776655444 6777788888
No 59
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=30.19 E-value=31 Score=22.56 Aligned_cols=18 Identities=22% Similarity=0.658 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCCCCCccc
Q 044738 249 VEKEIEKHAADGLGRVDY 266 (347)
Q Consensus 249 V~~aL~~y~aD~tg~vDY 266 (347)
++.+++.|+.|+.|.+||
T Consensus 2 ~~~~F~~~D~d~dG~I~~ 19 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDF 19 (29)
T ss_dssp HHHHHHHHSTTSSSEEEH
T ss_pred HHHHHHHHCCCCCCcCCH
Confidence 456788999999999886
No 60
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=30.13 E-value=66 Score=28.60 Aligned_cols=69 Identities=26% Similarity=0.295 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCC--------cCc-ccchhhhhhhHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Q 044738 113 FLLLVAVLGLGQMIRRVYLKSGDS--------AGA-ELGFSEFERRITEV-ENFLKTTTKMMQLQVEVLDRKVESEMGGL 182 (347)
Q Consensus 113 ~~l~~~~~~l~~~~~~~~~k~~~~--------~~~-~~~~~e~e~Ri~~~-E~~l~kltk~~~vQ~E~~~~kLe~E~~~l 182 (347)
|+||++++||+--++- ++=.+ ..+ -.+.+++|-...+- |+=+|.+-++++..+...-.|||+|+..|
T Consensus 34 laLLiLvLYlgtgisG---~sWEvserireCN~~QN~v~sqg~EyQt~epseEPik~~r~WLkenLhvflEkLE~EvreL 110 (135)
T PF15466_consen 34 LALLILVLYLGTGISG---RSWEVSERIRECNYYQNPVASQGFEYQTKEPSEEPIKAIRNWLKENLHVFLEKLEKEVREL 110 (135)
T ss_pred HHHHHHHHHHhcccCC---CchhHHhhhhhcCCcCCcccccccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777755532 22111 111 23444444333321 33446667888888888788899998766
Q ss_pred hc
Q 044738 183 RR 184 (347)
Q Consensus 183 r~ 184 (347)
.+
T Consensus 111 EQ 112 (135)
T PF15466_consen 111 EQ 112 (135)
T ss_pred HH
Confidence 43
No 61
>COG4755 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.89 E-value=1.6e+02 Score=26.68 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 044738 146 FERRITEVENFLKTTTKMMQLQVEV 170 (347)
Q Consensus 146 ~e~Ri~~~E~~l~kltk~~~vQ~E~ 170 (347)
-++++..++.|++.|-++...|+.+
T Consensus 6 ~~a~~~~~~sf~~~Le~WvklQk~~ 30 (151)
T COG4755 6 TEAVLEYLESFMERLEQWVKLQKRQ 30 (151)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688889999999999888888866
No 62
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=29.67 E-value=4.7e+02 Score=24.39 Aligned_cols=86 Identities=27% Similarity=0.403 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCcCcccchhhhhhhHHHHH----------HHHHHHHHHHHHHHHHh--hHHHHHHhh
Q 044738 113 FLLLVAVLGLGQMIRRVYLKSGDSAGAELGFSEFERRITEVE----------NFLKTTTKMMQLQVEVL--DRKVESEMG 180 (347)
Q Consensus 113 ~~l~~~~~~l~~~~~~~~~k~~~~~~~~~~~~e~e~Ri~~~E----------~~l~kltk~~~vQ~E~~--~~kLe~E~~ 180 (347)
+++.+.+++|...+... +-.+. ...|.++-.-+.+|| .+|.+|......|.+.+ -+++|.++.
T Consensus 46 ~Glm~~f~~l~e~v~~l--~idd~---~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~ 120 (190)
T PF05266_consen 46 VGLMVTFANLAEKVKKL--QIDDS---RSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIE 120 (190)
T ss_pred HHHHHHHHHHHHHHHHc--ccCCc---HHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 67888999999999874 22222 234444444444444 44555544433344443 244555444
Q ss_pred hhhcchhhHHHHHhHHhHHHHHHHh
Q 044738 181 GLRRERELKKLEEKSEGLERTLSEL 205 (347)
Q Consensus 181 ~lr~e~~i~~v~aq~d~Le~lL~~l 205 (347)
.- +.+..+++..+..|+.-+.+|
T Consensus 121 ~~--~~~~~~~e~~i~~Le~ki~el 143 (190)
T PF05266_consen 121 EK--EAELKELESEIKELEMKILEL 143 (190)
T ss_pred HH--HHhhhhHHHHHHHHHHHHHHH
Confidence 43 223334444455555544444
No 63
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=28.97 E-value=2.4e+02 Score=21.73 Aligned_cols=65 Identities=23% Similarity=0.296 Sum_probs=37.6
Q ss_pred HHHhHHhHHHHHHHhhh----ccCcCHHHHHHHHHHHHhcccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 044738 191 LEEKSEGLERTLSELKA----VDWLSKEEFEKFFEEFKKQKSGELSENDVSLDDIRVYAREIVEKEIEKHAADGLGRVDY 266 (347)
Q Consensus 191 v~aq~d~Le~lL~~l~s----~~~vsK~E~~kll~~ikni~s~e~s~~~~~ld~v~~~~~~iV~~aL~~y~aD~tg~vDY 266 (347)
++.+.+.+......+-. .|.++.+||..++..... .. ......-+ -++..+..++.++.|++||
T Consensus 3 ~~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g--~~--~~~~~~~~--------ei~~i~~~~d~~~~g~I~f 70 (88)
T cd00213 3 LEKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELP--NF--LKNQKDPE--------AVDKIMKDLDVNKDGKVDF 70 (88)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhh--hh--ccCCCCHH--------HHHHHHHHhccCCCCcCcH
Confidence 55666667666666633 278999999998864210 00 00011111 2333456677888888887
Q ss_pred c
Q 044738 267 A 267 (347)
Q Consensus 267 A 267 (347)
.
T Consensus 71 ~ 71 (88)
T cd00213 71 Q 71 (88)
T ss_pred H
Confidence 5
No 64
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=28.54 E-value=2.9e+02 Score=23.67 Aligned_cols=64 Identities=19% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcc--hhhHHHHHh------------HHhHHHHHHHhhhccCcCHHHHHH
Q 044738 153 VENFLKTTTKMMQLQVEVLDRKVESEMGGLRRE--RELKKLEEK------------SEGLERTLSELKAVDWLSKEEFEK 218 (347)
Q Consensus 153 ~E~~l~kltk~~~vQ~E~~~~kLe~E~~~lr~e--~~i~~v~aq------------~d~Le~lL~~l~s~~~vsK~E~~k 218 (347)
+++++++=-.....-+++ ++.=+..++.+ +.++.+..+ .+.+..+|..| +++||+|++.
T Consensus 28 ~~~LVkkGe~~~ee~k~~----~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~l---g~~tk~ev~~ 100 (118)
T TIGR01837 28 FNRLVKEGELAEKRGQKR----FDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRL---NIPSREEIEA 100 (118)
T ss_pred HHHHHHhccccHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHc---CCCCHHHHHH
Q ss_pred HHHHH
Q 044738 219 FFEEF 223 (347)
Q Consensus 219 ll~~i 223 (347)
|-..+
T Consensus 101 L~~RI 105 (118)
T TIGR01837 101 LSAKI 105 (118)
T ss_pred HHHHH
No 65
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=28.14 E-value=4.8e+02 Score=24.04 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCC
Q 044738 239 DDIRVYAREIVEKEIEKHAADG 260 (347)
Q Consensus 239 d~v~~~~~~iV~~aL~~y~aD~ 260 (347)
......++.||-.+|.+|+.|.
T Consensus 180 ~~A~~~Ar~Ii~~AiQR~A~e~ 201 (201)
T PF12072_consen 180 EEADKKARRIIATAIQRYASEH 201 (201)
T ss_pred HHHHHHHHHHHHHHHHhhccCC
Confidence 3445688999999999998773
No 66
>PRK07734 motB flagellar motor protein MotB; Reviewed
Probab=27.76 E-value=79 Score=30.23 Aligned_cols=32 Identities=16% Similarity=0.075 Sum_probs=22.1
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 044738 93 SSPKPEKPRWATVVSIFTKNFLLLVAVLGLGQ 124 (347)
Q Consensus 93 ~~~k~~~~~W~~~~sv~~k~~~l~~~~~~l~~ 124 (347)
....+.-|+|+....=|+=+++.+|+|+|...
T Consensus 10 ~~~~~~~~~W~vtYAD~vTlLlaFFvlL~s~s 41 (259)
T PRK07734 10 KHEEHIDESWLIPYADLLTLLLALFIVLFAMS 41 (259)
T ss_pred CcCCCCCCcchhhHHHHHHHHHHHHHHHHHHh
Confidence 34445579999988777666777777776544
No 67
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=26.99 E-value=5.5e+02 Score=24.36 Aligned_cols=100 Identities=19% Similarity=0.151 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcCcc-cchhhhhh-hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcc-----hhh
Q 044738 116 LVAVLGLGQMIRRVYLKSGDSAGAE-LGFSEFER-RITEVENFLKTTTKMMQLQVEVLDRKVESEMGGLRRE-----REL 188 (347)
Q Consensus 116 ~~~~~~l~~~~~~~~~k~~~~~~~~-~~~~e~e~-Ri~~~E~~l~kltk~~~vQ~E~~~~kLe~E~~~lr~e-----~~i 188 (347)
-+++.+..-..|..+.+.+...-|+ ....+..+ -.++.+-+-..+.+....|+-. ++.|.....+| ..+
T Consensus 18 ~~~~~~~~~~a~~~~~~~~~e~ed~~~~~~~~~~~~~~e~~k~~~~i~da~~dq~~~----~q~e~~~~lk~~a~~~E~l 93 (192)
T COG3334 18 RFLLLLASAFALFAAKPVGAEAEDAAAELAEKKAAAQSEIEKFCANIADAAADQLYA----LQKELLEKLKDLAEVNERL 93 (192)
T ss_pred HHHHHHHHHHHHHHhccccccccchhhhcccccchhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3455555555665444434433333 22223333 3455555544555555555544 33333333332 334
Q ss_pred HHHHHhHHhHHHHHHHhhhccCc--CHHHHHHHHH
Q 044738 189 KKLEEKSEGLERTLSELKAVDWL--SKEEFEKFFE 221 (347)
Q Consensus 189 ~~v~aq~d~Le~lL~~l~s~~~v--sK~E~~kll~ 221 (347)
+.+++.-..++.++.+ .++++ .+.+..+++.
T Consensus 94 k~lE~~kae~k~~~e~--re~~l~~~qae~~klv~ 126 (192)
T COG3334 94 KALEKKKAELKDLEEE--REGILRSKQAEDGKLVK 126 (192)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHH
Confidence 5555555555555554 44555 5555555554
No 68
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=26.82 E-value=1.8e+02 Score=23.35 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=36.6
Q ss_pred HHHhHHhHHHHHHHhhh--c-c-CcCHHHHHHHHHHHH-hcccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 044738 191 LEEKSEGLERTLSELKA--V-D-WLSKEEFEKFFEEFK-KQKSGELSENDVSLDDIRVYAREIVEKEIEKHAADGLGRVD 265 (347)
Q Consensus 191 v~aq~d~Le~lL~~l~s--~-~-~vsK~E~~kll~~ik-ni~s~e~s~~~~~ld~v~~~~~~iV~~aL~~y~aD~tg~vD 265 (347)
|+.-+..+....+.+-. . | .+|++||..++.... +.... ..+.+ -|++.++..+.|+.|.+|
T Consensus 5 le~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~-----~~~~~--------~v~~i~~elD~n~dG~Id 71 (93)
T cd05026 5 LEGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSS-----QKDPM--------LVDKIMNDLDSNKDNEVD 71 (93)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhccc-----ccCHH--------HHHHHHHHhCCCCCCCCC
Confidence 34444555555555531 2 3 399999999987532 10010 11112 244456667899999999
Q ss_pred cc
Q 044738 266 YA 267 (347)
Q Consensus 266 YA 267 (347)
|.
T Consensus 72 f~ 73 (93)
T cd05026 72 FN 73 (93)
T ss_pred HH
Confidence 85
No 69
>PF03561 Allantoicase: Allantoicase repeat; InterPro: IPR015908 Allantoicase (also known as allantoate amidinohydrolase) is involved in purine degradation, facilitating the utilization of purines as secondary nitrogen sources under nitrogen-limiting conditions. While purine degradation converges to uric acid in all vertebrates, its further degradation varies from species to species. Uric acid is excreted by birds, reptiles, and some mammals that do not have a functional uricase gene, whereas other mammals produce allantoin. Amphibians and microorganisms produce ammonia and carbon dioxide using the uricolytic pathway. Allantoicase performs the second step in this pathway catalyzing the conversion of allantoate into ureidoglycolate and urea. allantoate + H(2)0 = (S)-ureidoglycolate + urea The structure of allantoicase is best described as being composed of two repeats (the allantoicase repeats: AR1 and AR2), which are connected by a flexible linker. The crystal structure, resolved at 2.4A resolution, reveals that AR1 has a very similar fold to AR2, both repeats being jelly-roll motifs, composed of four-stranded and five-stranded antiparallel beta-sheets []. Each jelly-roll motif has two conserved surface patches that probably constitute the active site []. The mammalian proteins matched by this entry are thought to be non-functional as mammals do not appear to possess allantoicase activity [].; GO: 0004037 allantoicase activity; PDB: 1O59_A 1SG3_A.
Probab=26.67 E-value=1.7e+02 Score=26.41 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=15.3
Q ss_pred eEEEEEecCceeeeEEEEe
Q 044738 325 GFVQIKLRTAIIPEAITLE 343 (347)
Q Consensus 325 G~L~I~La~~I~ptaVTLE 343 (347)
=.+.|+|..|-.|..|.|+
T Consensus 52 DW~IikLg~~G~I~~i~ID 70 (152)
T PF03561_consen 52 DWAIIKLGAPGVIRGIEID 70 (152)
T ss_dssp EEEEEE-SSSCEEEEEEEE
T ss_pred CEEEEECCCCCEEEEEEEe
Confidence 5788999999888888876
No 70
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=26.60 E-value=1.6e+02 Score=24.61 Aligned_cols=50 Identities=26% Similarity=0.497 Sum_probs=33.3
Q ss_pred HHHHhhhhhcc-hhhHHHHHhHHhHHHHHHHhhhccCcCHHHHHHHHHHHHh
Q 044738 175 VESEMGGLRRE-RELKKLEEKSEGLERTLSELKAVDWLSKEEFEKFFEEFKK 225 (347)
Q Consensus 175 Le~E~~~lr~e-~~i~~v~aq~d~Le~lL~~l~s~~~vsK~E~~kll~~ikn 225 (347)
++.|+...+.. ..+..+.++.+.++.-+..+ ....-+..|+..++.++..
T Consensus 11 l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~-~~~lP~~~~~~~ll~~l~~ 61 (144)
T PF04350_consen 11 LQQELAQLKEKVANLEELKKQLEQLEQQLEEL-LKKLPAEEEIPSLLEDLNR 61 (144)
T ss_dssp -HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHH-HHCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHhCCCchhHHHHHHHHHH
Confidence 56666666555 56777888888877777776 4455666677777776643
No 71
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=26.52 E-value=3.6e+02 Score=28.44 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=14.6
Q ss_pred HhHHhHHHHHHHhhhcc-------CcCHHHHH
Q 044738 193 EKSEGLERTLSELKAVD-------WLSKEEFE 217 (347)
Q Consensus 193 aq~d~Le~lL~~l~s~~-------~vsK~E~~ 217 (347)
+|-+.|-.+|.+++.+| .|+.+|-.
T Consensus 112 ~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~ 143 (420)
T COG4942 112 EQRRRLAEQLAALQRSGRNPPPALLVSPEDAQ 143 (420)
T ss_pred HHHHHHHHHHHHHHhccCCCCchhhcChhhhh
Confidence 44566666666665542 46666644
No 72
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=26.44 E-value=6.3e+02 Score=25.58 Aligned_cols=11 Identities=0% Similarity=0.063 Sum_probs=5.2
Q ss_pred CcchHHHHHHH
Q 044738 99 KPRWATVVSIF 109 (347)
Q Consensus 99 ~~~W~~~~sv~ 109 (347)
...|..++.++
T Consensus 28 ~~~~l~~lall 38 (372)
T PF04375_consen 28 GGSGLALLALL 38 (372)
T ss_pred cchHHHHHHHH
Confidence 34455554444
No 73
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=26.33 E-value=3.7e+02 Score=22.10 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=34.9
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcc-----hhhHHHHHhHHhHHHHHHHh
Q 044738 142 GFSEFERRITEVENFLKTTTKMMQLQVEVLDRKVESEMGGLRRE-----RELKKLEEKSEGLERTLSEL 205 (347)
Q Consensus 142 ~~~e~e~Ri~~~E~~l~kltk~~~vQ~E~~~~kLe~E~~~lr~e-----~~i~~v~aq~d~Le~lL~~l 205 (347)
++...+..|+.||..+..-....+.. ..++.|+..|-.+ .++.+..++.+.|+....++
T Consensus 9 al~rL~~aid~LE~~v~~r~~~~~~~-----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Ev 72 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAVDRRLERDRKR-----DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREV 72 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44466777777776643322211111 2356666666666 55677777777777777776
No 74
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=25.89 E-value=3.3e+02 Score=27.10 Aligned_cols=64 Identities=23% Similarity=0.413 Sum_probs=40.2
Q ss_pred hhhhhhhHHHHHHHHHHHH---HHHHHHHHHh---hHHHHHHhhhhhcc-------------------hhhHHHHHhHHh
Q 044738 143 FSEFERRITEVENFLKTTT---KMMQLQVEVL---DRKVESEMGGLRRE-------------------RELKKLEEKSEG 197 (347)
Q Consensus 143 ~~e~e~Ri~~~E~~l~klt---k~~~vQ~E~~---~~kLe~E~~~lr~e-------------------~~i~~v~aq~d~ 197 (347)
+.-|..+-.++++-|.+.. -+.....|-+ .++||+|...|++- .++..+..|.+.
T Consensus 218 L~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~k 297 (309)
T PF09728_consen 218 LNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEK 297 (309)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3367777777777765544 2233333332 67899999999886 223556666777
Q ss_pred HHHHHHHhh
Q 044738 198 LERTLSELK 206 (347)
Q Consensus 198 Le~lL~~l~ 206 (347)
|++|...|.
T Consensus 298 Le~LcRaLQ 306 (309)
T PF09728_consen 298 LEKLCRALQ 306 (309)
T ss_pred HHHHHHHHh
Confidence 776666653
No 75
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=25.86 E-value=7.9e+02 Score=25.80 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=6.9
Q ss_pred HHhhHHHHHHhhhh
Q 044738 169 EVLDRKVESEMGGL 182 (347)
Q Consensus 169 E~~~~kLe~E~~~l 182 (347)
+-.....+.|++.+
T Consensus 89 ~~~~~~~q~el~~l 102 (391)
T COG2959 89 ESLIAQQQAELDRL 102 (391)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555555553
No 76
>PRK12799 motB flagellar motor protein MotB; Reviewed
Probab=25.66 E-value=83 Score=32.93 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=22.7
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 044738 96 KPEKPRWATVVSIFTKNFLLLVAVLGLGQM 125 (347)
Q Consensus 96 k~~~~~W~~~~sv~~k~~~l~~~~~~l~~~ 125 (347)
.|.-+.|++...=|+=+++.+|+|+|+...
T Consensus 21 ~hhggaWkVAYADfvTlLMAFFlLLwsmSs 50 (421)
T PRK12799 21 AHYGGSWKIAYADFMTAMMAFFLVMWLLAV 50 (421)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHhhc
Confidence 344589999988887778888888886543
No 77
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=25.04 E-value=4.5e+02 Score=26.03 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcc
Q 044738 150 ITEVENFLKTTTKMMQLQVEVLDRKVESEMGGLRRE 185 (347)
Q Consensus 150 i~~~E~~l~kltk~~~vQ~E~~~~kLe~E~~~lr~e 185 (347)
+.++|.-|+...+..+.|++. ++..+..+.++
T Consensus 160 ~~~iE~~l~~ai~~~~~~~~~----~~~~l~~l~~d 191 (267)
T PF10234_consen 160 LNEIEKALKEAIKAVQQQLQQ----TQQQLNNLASD 191 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 455666666655555555555 55555555555
No 78
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=24.92 E-value=1.3e+02 Score=28.45 Aligned_cols=25 Identities=12% Similarity=0.292 Sum_probs=16.9
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHH
Q 044738 141 LGFSEFERRITEVENFLKTTTKMMQ 165 (347)
Q Consensus 141 ~~~~e~e~Ri~~~E~~l~kltk~~~ 165 (347)
..+.|.++||.+++....++...+.
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ 156 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLE 156 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444888888888877666665544
No 79
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.84 E-value=3.8e+02 Score=31.60 Aligned_cols=41 Identities=24% Similarity=0.300 Sum_probs=18.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH-H-----HhhHHHHHHhhhhhcc
Q 044738 145 EFERRITEVENFLKTTTKMMQLQV-E-----VLDRKVESEMGGLRRE 185 (347)
Q Consensus 145 e~e~Ri~~~E~~l~kltk~~~vQ~-E-----~~~~kLe~E~~~lr~e 185 (347)
+.|.|+.+++.-++.+-+..+.+. + ...++|..|...|.++
T Consensus 784 ~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e 830 (1174)
T KOG0933|consen 784 NRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKE 830 (1174)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544443222221 1 1135555565555555
No 80
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=24.78 E-value=2.4e+02 Score=22.43 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=29.4
Q ss_pred ccCcCHHHHHHHHHH-HHhcccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 044738 208 VDWLSKEEFEKFFEE-FKKQKSGELSENDVSLDDIRVYAREIVEKEIEKHAADGLGRVDYA 267 (347)
Q Consensus 208 ~~~vsK~E~~kll~~-ikni~s~e~s~~~~~ld~v~~~~~~iV~~aL~~y~aD~tg~vDYA 267 (347)
.+.++++||..++.. +-+..+ ...+ + ..++..+..++.|+.|++||-
T Consensus 24 ~~~Is~~El~~ll~~~~g~~~t-----~~~~----~----~~v~~i~~~~D~d~dG~I~f~ 71 (88)
T cd05030 24 PDTLYKKEFKQLVEKELPNFLK-----KEKN----Q----KAIDKIFEDLDTNQDGQLSFE 71 (88)
T ss_pred cccCCHHHHHHHHHHHhhHhhc-----cCCC----H----HHHHHHHHHcCCCCCCcCcHH
Confidence 458999999999863 221111 0111 1 335555677889999999985
No 81
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=24.50 E-value=98 Score=24.79 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=15.0
Q ss_pred hhhccCcCHHHHHHHHHHH
Q 044738 205 LKAVDWLSKEEFEKFFEEF 223 (347)
Q Consensus 205 l~s~~~vsK~E~~kll~~i 223 (347)
|..+++|||+||+..-.-+
T Consensus 41 l~kldlVtREEFd~q~~~L 59 (79)
T PF04380_consen 41 LSKLDLVTREEFDAQKAVL 59 (79)
T ss_pred HHHCCCCcHHHHHHHHHHH
Confidence 3456999999999977655
No 82
>PF02315 MDH: Methanol dehydrogenase beta subunit; InterPro: IPR003420 Methanol dehydrogenase (MDH) (1.1.99.8 from EC), found in Gram-negative bacteria, is a pyrroloquinoline quinone (PQQ)-containing enzyme which oxidises methanol to formaldehyde. It is located in the periplasmic space and passes electrons derived from the oxidation of methanol to the soluble cytochrome cL []. The enzyme is a tetramer composed of two large alpha subunits and two smaller beta subunits. The alpha subunit binds the PQQ cofactor and contains the active site, while the function of the beta subunit is currently unknown []. The alpha subunit forms an eight-bladed propeller structure, with several novel tryptophan-docking motifs linking the individual blades together. This entry represents the beta subunit of methanol dehydrogenase.; GO: 0004022 alcohol dehydrogenase (NAD) activity, 0015946 methanol oxidation, 0055114 oxidation-reduction process; PDB: 1LRW_B 2D0V_J 2AD6_B 1G72_B 4AAH_D 2AD8_D 2AD7_D 1H4J_D 1H4I_B 1W6S_B ....
Probab=24.28 E-value=29 Score=29.26 Aligned_cols=7 Identities=43% Similarity=1.374 Sum_probs=4.2
Q ss_pred CCCCccc
Q 044738 312 GEPGQCF 318 (347)
Q Consensus 312 ~~PG~CW 318 (347)
..||+||
T Consensus 29 kapG~CW 35 (93)
T PF02315_consen 29 KAPGNCW 35 (93)
T ss_dssp SBTTB--
T ss_pred CCCcccc
Confidence 3899999
No 83
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=24.25 E-value=8.8e+02 Score=28.74 Aligned_cols=38 Identities=29% Similarity=0.416 Sum_probs=27.3
Q ss_pred hhhhhHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHhhhhhc
Q 044738 145 EFERRITEVENFLKTTT-KMMQLQVEVLDRKVESEMGGLRR 184 (347)
Q Consensus 145 e~e~Ri~~~E~~l~klt-k~~~vQ~E~~~~kLe~E~~~lr~ 184 (347)
++|.+|++++..++.+. ...+.+.. .++...||..|++
T Consensus 686 ~~e~~l~e~~~~~~~l~~~~~q~~~~--~~~~~~em~el~n 724 (1074)
T KOG0250|consen 686 EAEKNLEELEKKLRELSEHIEQIKRR--IRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhh
Confidence 77888888888877776 33333333 4668888999988
No 84
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=23.92 E-value=4.3e+02 Score=28.40 Aligned_cols=13 Identities=15% Similarity=0.486 Sum_probs=7.7
Q ss_pred ChhHHHHHHHHHH
Q 044738 237 SLDDIRVYAREIV 249 (347)
Q Consensus 237 ~ld~v~~~~~~iV 249 (347)
.+.++++++++++
T Consensus 436 ~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 436 KITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHhHh
Confidence 3556666666665
No 85
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=23.80 E-value=3.3e+02 Score=28.68 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=29.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcc
Q 044738 145 EFERRITEVENFLKTTTKMMQLQVEVLDRKVESEMGGLRRE 185 (347)
Q Consensus 145 e~e~Ri~~~E~~l~kltk~~~vQ~E~~~~kLe~E~~~lr~e 185 (347)
|++.+-..+|+| ..+.|-..+|...+..-++.++...+.+
T Consensus 168 Elq~k~t~~~af-n~tikife~q~~~~e~~~ka~~d~~~~e 207 (464)
T KOG4637|consen 168 ELQMKRTAIEAF-NETIKIFEEQCGTQENLSKAYIDRFRRE 207 (464)
T ss_pred HHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 666666777777 6667777777777667778888888877
No 86
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=23.14 E-value=4e+02 Score=23.49 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=30.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcchhhHHHHHhHHhHHHHHHHh
Q 044738 145 EFERRITEVENFLKTTTKMMQLQVEVLDRKVESEMGGLRRERELKKLEEKSEGLERTLSEL 205 (347)
Q Consensus 145 e~e~Ri~~~E~~l~kltk~~~vQ~E~~~~kLe~E~~~lr~e~~i~~v~aq~d~Le~lL~~l 205 (347)
....||.++|..+.++...+..+++. +.+....|.+ +.++..+......+|+++
T Consensus 53 ~L~~riKevd~~~~~l~~~~~erqk~----~~k~ae~L~k---v~els~~L~~~~~lL~~~ 106 (131)
T PF10158_consen 53 ALAKRIKEVDQEIAKLLQQMVERQKR----FAKFAEQLEK---VNELSQQLSRCQSLLNQT 106 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 56677777777777777555554444 3333333332 455555555555555543
No 87
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.13 E-value=3.2e+02 Score=29.28 Aligned_cols=35 Identities=17% Similarity=0.476 Sum_probs=19.6
Q ss_pred hhHHHHHHhhhhhcc--hhhHHHHHhHHhHHHHHHHh
Q 044738 171 LDRKVESEMGGLRRE--RELKKLEEKSEGLERTLSEL 205 (347)
Q Consensus 171 ~~~kLe~E~~~lr~e--~~i~~v~aq~d~Le~lL~~l 205 (347)
++.+|...+...|.+ .+.+.|..+...+..+|++|
T Consensus 99 id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 99 IDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665555 44555555555555555554
No 88
>PRK00736 hypothetical protein; Provisional
Probab=22.91 E-value=2.4e+02 Score=22.07 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=17.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 044738 143 FSEFERRITEVENFLKTTTKMMQLQVE 169 (347)
Q Consensus 143 ~~e~e~Ri~~~E~~l~kltk~~~vQ~E 169 (347)
+.+.|.|++-.|+.+..|.+....|..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~ 33 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWK 33 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777777777777766555543
No 89
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=22.85 E-value=2.3e+02 Score=22.90 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=38.6
Q ss_pred HHHhHHhHHHHHHH-hhh---ccCcCHHHHHHHHHHHH-hcccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 044738 191 LEEKSEGLERTLSE-LKA---VDWLSKEEFEKFFEEFK-KQKSGELSENDVSLDDIRVYAREIVEKEIEKHAADGLGRVD 265 (347)
Q Consensus 191 v~aq~d~Le~lL~~-l~s---~~~vsK~E~~kll~~ik-ni~s~e~s~~~~~ld~v~~~~~~iV~~aL~~y~aD~tg~vD 265 (347)
|+..+..|..+... ... .+.+|++||..++.... ++.. ...+. ..+++.++.++.|+.|.+|
T Consensus 4 le~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~-----~~~~~--------~~~~~ll~~~D~d~DG~I~ 70 (89)
T cd05023 4 TERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTK-----NQKDP--------GVLDRMMKKLDLNSDGQLD 70 (89)
T ss_pred HHHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhc-----CCCCH--------HHHHHHHHHcCCCCCCcCc
Confidence 44455556666666 322 23799999999998542 1111 11111 2244456778999999999
Q ss_pred cc
Q 044738 266 YA 267 (347)
Q Consensus 266 YA 267 (347)
|-
T Consensus 71 f~ 72 (89)
T cd05023 71 FQ 72 (89)
T ss_pred HH
Confidence 85
No 90
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=22.78 E-value=3.9e+02 Score=21.21 Aligned_cols=41 Identities=15% Similarity=0.372 Sum_probs=20.6
Q ss_pred hhhhhHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHhhhhhcc
Q 044738 145 EFERRITEVENFLKTTTKMM---QLQVEVLDRKVESEMGGLRRE 185 (347)
Q Consensus 145 e~e~Ri~~~E~~l~kltk~~---~vQ~E~~~~kLe~E~~~lr~e 185 (347)
....++..++..+..+-.+. +.|.+.+...|..++..|+.-
T Consensus 11 ~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~ 54 (127)
T smart00502 11 KLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNA 54 (127)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444222 234444555566666666654
No 91
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=22.20 E-value=4.2e+02 Score=26.04 Aligned_cols=48 Identities=17% Similarity=0.354 Sum_probs=23.0
Q ss_pred HHHHhhhhhcc-hhhHHHHHhHHhHHHHHHHhhhccCcCHHHHHHHHHH
Q 044738 175 VESEMGGLRRE-RELKKLEEKSEGLERTLSELKAVDWLSKEEFEKFFEE 222 (347)
Q Consensus 175 Le~E~~~lr~e-~~i~~v~aq~d~Le~lL~~l~s~~~vsK~E~~kll~~ 222 (347)
|..++..|... .++..+...+..|.+.|..=+..|-.---.++.+++.
T Consensus 36 L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~~k~rG~wGE~~Le~iLe~ 84 (304)
T PF02646_consen 36 LKEQLKQLSEANGEIQQLSQEASNLTSALKNSKTRGNWGEMQLERILED 84 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 44444444443 3445555555555555554444444333344444444
No 92
>PRK09041 motB flagellar motor protein MotB; Validated
Probab=22.09 E-value=1.1e+02 Score=30.53 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=24.0
Q ss_pred cccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 044738 90 SRKSSPKPEKPRWATVVSIFTKNFLLLVAVLGLGQ 124 (347)
Q Consensus 90 ~~k~~~k~~~~~W~~~~sv~~k~~~l~~~~~~l~~ 124 (347)
.+|....+..++|++...=|+=+++.+|+|+|..+
T Consensus 14 ~~~~~~~~~g~~WlvtYAD~vTLLLaFFVlL~smS 48 (317)
T PRK09041 14 VKKKGHGHHGGSWKIAYADFMTAMMAFFLVMWLLS 48 (317)
T ss_pred ecccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHh
Confidence 33334456679999888777666777777777654
No 93
>PLN02320 seryl-tRNA synthetase
Probab=21.97 E-value=1.7e+02 Score=31.36 Aligned_cols=20 Identities=20% Similarity=0.587 Sum_probs=15.0
Q ss_pred cccCCCCCCCcchHHHHHHH
Q 044738 90 SRKSSPKPEKPRWATVVSIF 109 (347)
Q Consensus 90 ~~k~~~k~~~~~W~~~~sv~ 109 (347)
..+...+.-+|.||-.+++=
T Consensus 51 ~~~~~~~~~~~~~~~mlD~k 70 (502)
T PLN02320 51 TQKSDSSVARPQWKAAIDFK 70 (502)
T ss_pred cccccCcccccccccccCHH
Confidence 44566667799999998865
No 94
>PF12918 TcdB_N: TcdB toxin N-terminal helical domain; InterPro: IPR024772 Toxins A (TcdA) and B (TcdB) of Clostridium difficile belong to the family of clostridial glucosylating toxins. These toxins glucosylate small GTPases of Rho and Ras families, inhibiting the signalling and regulatory functions of these switch proteins. After receptor-binding, the toxins are endocytosed to reach acidic endosomal compartments from where the toxins are translocated into the cytosol []. TcdB has been shown to consist of a N-terminal glucosyltransferase domain (GTD), responsible for the biological effects of the toxin, a cysteine protease domain (CPD), responsible for autocatalytic cleavage, a hydrophobic region (HR), which has been suggested to be involved in toxin translocation, and a C-terminal repetitive domain involved in receptor binding. The pore-forming region of toxin B has been described to be in a region in the middle of the protein, within amino acid residues 830 and 990 []. This entry represents a short helical bundle domain found associated with the catalytic domain of TcdA and TcdB []. It is also found in some other toxins. The function of this domain is unknown, but it may be involved in substrate recognition.; PDB: 2VKH_C 2VL8_A 2VKD_A 2BVL_A 2BVM_A 3SS1_A 3SRZ_A 2VK9_A.
Probab=21.63 E-value=3.1e+02 Score=21.44 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=32.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcc-------h-hhHHHHHhHHhHHH
Q 044738 145 EFERRITEVENFLKTTTKMMQLQVEVLDRKVESEMGGLRRE-------R-ELKKLEEKSEGLER 200 (347)
Q Consensus 145 e~e~Ri~~~E~~l~kltk~~~vQ~E~~~~kLe~E~~~lr~e-------~-~i~~v~aq~d~Le~ 200 (347)
+|..++.++++.+.+++.....+......+|.++++..+.- + +.+-+..|++.|+.
T Consensus 2 ~Ydl~~~ni~~~l~~l~~~~~~~~~~~l~~lk~~I~~Y~~l~~~~knsr~g~~ll~~qa~ll~~ 65 (66)
T PF12918_consen 2 EYDLTIDNIEEKLFKLTEEQSPKCYELLKKLKKAIDNYNNLYENEKNSRKGQELLQKQADLLDE 65 (66)
T ss_dssp HHHHHHHHHHHHHHTTTTS-HHHHHHHHHHHHHHHHHHHHHTTT-TTH---HHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHhHHHHHhc
Confidence 68889999998876666333333333345677777765543 2 23455566655543
No 95
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.59 E-value=6.6e+02 Score=24.34 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=22.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Q 044738 146 FERRITEVENFLKTTTKMMQLQVEVLDRKVESEMGGL 182 (347)
Q Consensus 146 ~e~Ri~~~E~~l~kltk~~~vQ~E~~~~kLe~E~~~l 182 (347)
.+.--.++..+|......+..|.|. +|.|+..|
T Consensus 116 ~e~ek~e~~~wl~~~Id~L~~QiE~----~E~E~E~L 148 (233)
T PF04065_consen 116 KEKEKEEARDWLKDSIDELNRQIEQ----LEAEIESL 148 (233)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 4445566667777777777778877 77776654
No 96
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.37 E-value=4.6e+02 Score=23.13 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=5.3
Q ss_pred HHHHhhhhhcc
Q 044738 175 VESEMGGLRRE 185 (347)
Q Consensus 175 Le~E~~~lr~e 185 (347)
+++|+..+|.+
T Consensus 87 i~~eV~~v~~d 97 (126)
T PF07889_consen 87 IKDEVTEVRED 97 (126)
T ss_pred HHHHHHHHHhh
Confidence 44444444444
No 97
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.34 E-value=8.2e+02 Score=29.76 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=29.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcCc-ccchhhhhhhHHHHHHHH
Q 044738 99 KPRWATVVSIFTKNFLLLVAVLGLGQMIRRVYLKSGDSAGA-ELGFSEFERRITEVENFL 157 (347)
Q Consensus 99 ~~~W~~~~sv~~k~~~l~~~~~~l~~~~~~~~~k~~~~~~~-~~~~~e~e~Ri~~~E~~l 157 (347)
-..|--||+-+++.+--| .+-. -.+|++.+... -..|.++|.+|.++.++|
T Consensus 1166 F~~WD~il~~L~~rt~rl------~~~A--~~l~~tGv~gay~s~f~~me~kl~~ir~il 1217 (1758)
T KOG0994|consen 1166 FQTWDAILQELALRTHRL------INRA--KELKQTGVLGAYASRFLDMEEKLEEIRAIL 1217 (1758)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHH--HHhhhccCchhhHhHHHHHHHHHHHHHHHh
Confidence 456988888776543322 2222 23456665444 344557777777777766
No 98
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=21.27 E-value=4e+02 Score=25.83 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=33.2
Q ss_pred chhhhhhhHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHhhhhhcc
Q 044738 142 GFSEFERRITEVENFLKTTT---KMMQLQVEVLDRKVESEMGGLRRE 185 (347)
Q Consensus 142 ~~~e~e~Ri~~~E~~l~klt---k~~~vQ~E~~~~kLe~E~~~lr~e 185 (347)
.|.+.-+|+-+.+..+++++ +.++.|+..++.+|..++.....+
T Consensus 119 ~~~~l~srl~~~~~~~e~l~~~~~~L~~~~~el~~rik~~ied~~~~ 165 (217)
T COG1777 119 GISELISRLLEINREIEELSRAQTELQKQLNELMDRIKEEIEDKDGD 165 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 35677788888888888887 344455666889999999988886
No 99
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=21.15 E-value=3.3e+02 Score=30.30 Aligned_cols=102 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcCCCCcCcccchh--hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcc-----------hhh
Q 044738 122 LGQMIRRVYLKSGDSAGAELGFS--EFERRITEVENFLKTTTKMMQLQVEVLDRKVESEMGGLRRE-----------REL 188 (347)
Q Consensus 122 l~~~~~~~~~k~~~~~~~~~~~~--e~e~Ri~~~E~~l~kltk~~~vQ~E~~~~kLe~E~~~lr~e-----------~~i 188 (347)
|.+++.|+ +.=....||+-.. +|+.|=...=-.+.....+-...++.--++|++|+..||.| .-.
T Consensus 201 ll~L~arm--~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~ 278 (683)
T PF08580_consen 201 LLALFARM--QPLRASLDFLPMRIEEFQSRAESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLG 278 (683)
T ss_pred HHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q ss_pred HHHHHhHHhHHHHHHHhhhcc--CcCHHHHHHHHHHHHh
Q 044738 189 KKLEEKSEGLERTLSELKAVD--WLSKEEFEKFFEEFKK 225 (347)
Q Consensus 189 ~~v~aq~d~Le~lL~~l~s~~--~vsK~E~~kll~~ikn 225 (347)
+++....|.++.+++.++... .+..+--.++.+++.+
T Consensus 279 ~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s 317 (683)
T PF08580_consen 279 RQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIES 317 (683)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
No 100
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.95 E-value=5.3e+02 Score=30.31 Aligned_cols=51 Identities=24% Similarity=0.431 Sum_probs=36.3
Q ss_pred HHHHHHhhhhhcc-------------hhhHHHHHhHHhHHHHHHHhhhccCcCHHHHHHHHHHH
Q 044738 173 RKVESEMGGLRRE-------------RELKKLEEKSEGLERTLSELKAVDWLSKEEFEKFFEEF 223 (347)
Q Consensus 173 ~kLe~E~~~lr~e-------------~~i~~v~aq~d~Le~lL~~l~s~~~vsK~E~~kll~~i 223 (347)
.-|+-++.-||.| .+++.++.|-+.|+..|=.|++-..=-|.|.+++.+++
T Consensus 342 deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kel 405 (1243)
T KOG0971|consen 342 DELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKEL 405 (1243)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3455555556655 34578888888888888877766666677777777766
No 101
>PRK09038 flagellar motor protein MotD; Reviewed
Probab=20.90 E-value=1.3e+02 Score=29.40 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=19.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHH
Q 044738 97 PEKPRWATVVSIFTKNFLLLVAVLGLG 123 (347)
Q Consensus 97 ~~~~~W~~~~sv~~k~~~l~~~~~~l~ 123 (347)
...|+|+....=|+=+++.+|+|+|..
T Consensus 12 ~~~~~WlvtYAD~mTLLlaFFVlL~sm 38 (281)
T PRK09038 12 ENHERWLVSYADFITLLFAFFVVMYAI 38 (281)
T ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 445899988777766677777777654
No 102
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.72 E-value=1.5e+02 Score=25.63 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=15.1
Q ss_pred HHhhhccCcCHHHHHHHHH
Q 044738 203 SELKAVDWLSKEEFEKFFE 221 (347)
Q Consensus 203 ~~l~s~~~vsK~E~~kll~ 221 (347)
++|+..+.|+|+||+..-+
T Consensus 48 ~~lnkLDlVsREEFdvq~q 66 (103)
T COG2960 48 RQLNKLDLVSREEFDVQRQ 66 (103)
T ss_pred HHHhhhhhhhHHHHHHHHH
Confidence 4677789999999997544
No 103
>PRK04406 hypothetical protein; Provisional
Probab=20.62 E-value=2.7e+02 Score=22.26 Aligned_cols=11 Identities=36% Similarity=0.573 Sum_probs=5.5
Q ss_pred hhhhHHHHHHH
Q 044738 146 FERRITEVENF 156 (347)
Q Consensus 146 ~e~Ri~~~E~~ 156 (347)
++.||.+||..
T Consensus 9 le~Ri~~LE~~ 19 (75)
T PRK04406 9 LEERINDLECQ 19 (75)
T ss_pred HHHHHHHHHHH
Confidence 45555555543
No 104
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=20.52 E-value=6.7e+02 Score=24.62 Aligned_cols=62 Identities=16% Similarity=0.296 Sum_probs=28.6
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHhhhhhcc-hhhHHHHHhHHhHHHHHH
Q 044738 142 GFSEFERRITEVENFLKTTTKMMQLQVEV--LDRKVESEMGGLRRE-RELKKLEEKSEGLERTLS 203 (347)
Q Consensus 142 ~~~e~e~Ri~~~E~~l~kltk~~~vQ~E~--~~~kLe~E~~~lr~e-~~i~~v~aq~d~Le~lL~ 203 (347)
+..-.+.-......++.......+.-.++ ..+.|..|+..+... .+++.++++-..|+.+|.
T Consensus 43 ~~s~~~~v~~~p~~~v~~~~~~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 43 VLSPVQSVVAAPFEFVDGVLEFLKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred chhHHHHHHhhHHHHHHhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33345555555555544444333321111 123344455444444 445556666666555554
No 105
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=20.50 E-value=2.3e+02 Score=24.55 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=25.1
Q ss_pred HHHHHHhhhhhcc-----hhhHHHHHhHHhHHHHHHHh
Q 044738 173 RKVESEMGGLRRE-----RELKKLEEKSEGLERTLSEL 205 (347)
Q Consensus 173 ~kLe~E~~~lr~e-----~~i~~v~aq~d~Le~lL~~l 205 (347)
..|+.|.+.||.| .-+.++.+.++..+++|+++
T Consensus 38 ~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~ 75 (106)
T PF11594_consen 38 QVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLSDA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888876 33578888888888888876
Done!