BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044740
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 4/132 (3%)
Query: 1 AHSVGRVHCANLVHRLYPTVDPTLNPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILD 60
H++G HC++ RL+P DPT++P + LK CP D V+ D TP + D
Sbjct: 178 GHTIGLAHCSSFEDRLFPRPDPTISPTFLSRLKRTCPAKGTDRRTVL----DVRTPNVFD 233
Query: 61 NNYYKNIINHKGLLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENNPLTGD 120
N YY +++N +GL + DQ L ++ T P V++ A F EQF +I + + T D
Sbjct: 234 NKYYIDLVNREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSD 293
Query: 121 QGEVRKDCRYVN 132
QGEVR++C N
Sbjct: 294 QGEVRRNCSVRN 305
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 1 AHSVGRVHCANLVHRLYPTV-----DPTLNPVYAEYLKGRCPTPDPDPDAVVYARNDRET 55
H+ G+ C +++ RLY DPTLN Y + L+G CP V + D T
Sbjct: 170 GHTFGKNQCRSIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF---DLRT 226
Query: 56 PMILDNNYYKNIINHKGLLIVDQQLASDPRTT---PFVQKMAADNSYFHEQFSRAIALLS 112
P I DN YY N+ KGL+ DQ+L S P T P V+ A F F A+ +
Sbjct: 227 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMG 286
Query: 113 ENNPLTGDQGEVRKDCRYVN 132
PLTG QG++R +CR VN
Sbjct: 287 NITPLTGTQGQIRLNCRVVN 306
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Query: 1 AHSVGRVHCANLVHRLY-----PTVDPTLNPVYAEYLKGRCPTPDPDPDAVVYARNDRET 55
AHS+G HC++ +RLY +DPTL+P YA L+ CP + + D T
Sbjct: 168 AHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSL-DIIT 226
Query: 56 PMILDNNYYKNIINHKGLLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
P +LDN YY + GLL DQ L ++ + V+ A + + + +F++A+ + +
Sbjct: 227 PSVLDNMYYTGVQLTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIE 286
Query: 116 PLTGDQGEVRKDCRYVN 132
LTG QGE+R +C VN
Sbjct: 287 VLTGTQGEIRTNCSVVN 303
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 89.4 bits (220), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 1 AHSVGRVHCANLVHRLYPTV-----DPTLNPVYAEYLKGRCPTPDPDPDAVVYARNDRET 55
HS G+ C ++ RLY DPTLN Y + L+G CP V + D T
Sbjct: 169 GHSFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF---DLRT 225
Query: 56 PMILDNNYYKNIINHKGLLIVDQQLASDPRTT---PFVQKMAADNSYFHEQFSRAIALLS 112
P I DN YY N+ KGL+ DQ+L S P T P V+ A F F A+ +
Sbjct: 226 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMG 285
Query: 113 ENNPLTGDQGEVRKDCRYVN 132
PLTG QG++R +CR VN
Sbjct: 286 NITPLTGTQGQIRLNCRVVN 305
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 1 AHSVGRVHCANLVHRLYPTV-----DPTLNPVYAEYLKGRCPTPDPDPDAVVYARNDRET 55
H+ G+ C ++ RLY DPTLN Y + L+G CP + + D T
Sbjct: 170 GHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDMDLRT 226
Query: 56 PMILDNNYYKNIINHKGLLIVDQQLASDPRTT---PFVQKMAADNSYFHEQFSRAIALLS 112
P I DN YY N+ KGL+ DQ+L S P T P V+ A F F A+ +
Sbjct: 227 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMG 286
Query: 113 ENNPLTGDQGEVRKDCRYVN 132
PLTG QG++R +CR VN
Sbjct: 287 NITPLTGTQGQIRLNCRVVN 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 1 AHSVGRVHCANLVHRLYPTV-----DPTLNPVYAEYLKGRCPTPDPDPDAVVYARNDRET 55
H+ G+ C ++ RLY DPTLN Y + L+G CP V + D T
Sbjct: 169 GHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF---DLRT 225
Query: 56 PMILDNNYYKNIINHKGLLIVDQQLASDPRTT---PFVQKMAADNSYFHEQFSRAIALLS 112
P I DN YY N+ KGL+ DQ+L S P T P V+ A F F A+ +
Sbjct: 226 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMG 285
Query: 113 ENNPLTGDQGEVRKDCRYVN 132
PLTG QG++R +CR VN
Sbjct: 286 NITPLTGTQGQIRLNCRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 1 AHSVGRVHCANLVHRLYPTV-----DPTLNPVYAEYLKGRCPTPDPDPDAVVYARNDRET 55
H+ G+ C ++ RLY DPTLN Y + L+G CP V + D T
Sbjct: 170 GHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF---DLRT 226
Query: 56 PMILDNNYYKNIINHKGLLIVDQQLASDPRTT---PFVQKMAADNSYFHEQFSRAIALLS 112
P I DN YY N+ KGL+ DQ+L S P T P V+ A F F A+ +
Sbjct: 227 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMG 286
Query: 113 ENNPLTGDQGEVRKDCRYVN 132
PLTG QG++R +CR VN
Sbjct: 287 NITPLTGTQGQIRLNCRVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 1 AHSVGRVHCANLVHRLYPTV-----DPTLNPVYAEYLKGRCPTPDPDPDAVVYARNDRET 55
H+ G+ C ++ RLY DPTLN Y + L+G CP V + D T
Sbjct: 169 GHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF---DLRT 225
Query: 56 PMILDNNYYKNIINHKGLLIVDQQLASDPRTT---PFVQKMAADNSYFHEQFSRAIALLS 112
P I DN YY N+ KGL+ DQ+L S P T P V+ A F F A+ +
Sbjct: 226 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMG 285
Query: 113 ENNPLTGDQGEVRKDCRYVN 132
PLTG QG++R +CR VN
Sbjct: 286 NITPLTGTQGQIRLNCRVVN 305
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 1 AHSVGRVHCANLVHRLYPTV-----DPTLNPVYAEYLKGRCPTPDPDPDAVVYARNDRET 55
H+ G+ C ++ RLY DPTLN Y + L+G CP V + D T
Sbjct: 170 GHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF---DLRT 226
Query: 56 PMILDNNYYKNIINHKGLLIVDQQLASDPRTT---PFVQKMAADNSYFHEQFSRAIALLS 112
P I DN YY N+ KGL+ DQ+L S P T P V+ A F F A+ +
Sbjct: 227 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMG 286
Query: 113 ENNPLTGDQGEVRKDCRYVN 132
PLTG QG++R +CR VN
Sbjct: 287 NITPLTGTQGQIRLNCRVVN 306
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 1 AHSVGRVHCANLVHRLYPTV-----DPTLNPVYAEYLKGRCPTPDPDPDAVVYARNDRET 55
H+ G+ C ++ RLY DPTLN Y + L+G CP V + D T
Sbjct: 170 GHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF---DLRT 226
Query: 56 PMILDNNYYKNIINHKGLLIVDQQLASDPRTT---PFVQKMAADNSYFHEQFSRAIALLS 112
P I DN YY N+ KGL+ DQ+L S P T P V+ A F F A+ +
Sbjct: 227 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMG 286
Query: 113 ENNPLTGDQGEVRKDCRYVN 132
PLTG QG++R +CR VN
Sbjct: 287 NITPLTGTQGQIRLNCRVVN 306
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 1 AHSVGRVHCANLVHRLYPTV-----DPTLNPVYAEYLKGRCPTPDPDPDAVVYARNDRET 55
H+ G+ C ++ RLY DPTLN Y + L+G CP V + D T
Sbjct: 170 GHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF---DLRT 226
Query: 56 PMILDNNYYKNIINHKGLLIVDQQLASDPRTT---PFVQKMAADNSYFHEQFSRAIALLS 112
P I DN YY N+ KGL+ DQ+L S P T P V+ A F F A+ +
Sbjct: 227 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMG 286
Query: 113 ENNPLTGDQGEVRKDCRYVN 132
PLTG QG++R +CR VN
Sbjct: 287 NITPLTGTQGQIRLNCRVVN 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 1 AHSVGRVHCANLVHRLYPTV-----DPTLNPVYAEYLKGRCPTPDPDPDAVVYARNDRET 55
H+ G+ C ++ RLY DPTLN Y + L+G CP V + D T
Sbjct: 169 GHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF---DLRT 225
Query: 56 PMILDNNYYKNIINHKGLLIVDQQLASDPRTT---PFVQKMAADNSYFHEQFSRAIALLS 112
P I DN YY N+ KGL+ DQ+L S P T P V+ A F F A+ +
Sbjct: 226 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMG 285
Query: 113 ENNPLTGDQGEVRKDCRYVN 132
PLTG QG++R +CR VN
Sbjct: 286 NITPLTGTQGQIRLNCRVVN 305
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 1 AHSVGRVHCANLVHRLYPTV-----DPTLNPVYAEYLKGRCPTPDPDPDAVVYARNDRET 55
H+ G+ C ++ RLY DPTLN Y + L+G CP V + D T
Sbjct: 169 GHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF---DLRT 225
Query: 56 PMILDNNYYKNIINHKGLLIVDQQLASDPRTT---PFVQKMAADNSYFHEQFSRAIALLS 112
P I DN YY N+ KGL+ DQ+L S P T P V+ A F F A+ +
Sbjct: 226 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMG 285
Query: 113 ENNPLTGDQGEVRKDCRYVN 132
PLTG QG++R +CR VN
Sbjct: 286 NITPLTGTQGQIRLNCRVVN 305
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 1 AHSVGRVHCANLVHRLYPTV-----DPTLNPVYAEYLKGRCPTPDPDPDAVVYARNDRET 55
H+ G+ C ++ RLY DPTLN Y + L+G CP V + D T
Sbjct: 169 GHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF---DLRT 225
Query: 56 PMILDNNYYKNIINHKGLLIVDQQLASDPRTT---PFVQKMAADNSYFHEQFSRAIALLS 112
P I DN YY N+ KGL+ DQ+L S P T P V+ A F F A+ +
Sbjct: 226 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMG 285
Query: 113 ENNPLTGDQGEVRKDCRYVN 132
PLTG QG++R +CR VN
Sbjct: 286 NITPLTGTQGQIRLNCRVVN 305
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 1 AHSVGRVHCANLVHRLYPTV-----DPTLNPVYAEYLKGRCPTPDPDPDAVVYARNDRET 55
AH+ GR C +RL+ DPTLN L+ CP + A D T
Sbjct: 169 AHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCP---QNGSASTITNLDLST 225
Query: 56 PMILDNNYYKNIINHKGLLIVDQQLAS--DPRTTPFVQKMAADNSYFHEQFSRAIALLSE 113
P DNNY+ N+ ++ GLL DQ+L S T V A++ + F + F++++ +
Sbjct: 226 PDAFDNNYFANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGN 285
Query: 114 NNPLTGDQGEVRKDCRYVN 132
+PLTG GE+R DC+ VN
Sbjct: 286 ISPLTGSNGEIRLDCKKVN 304
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 5/132 (3%)
Query: 1 AHSVGRVHCANLVHRLYPTVDPTLNPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILD 60
AH++G+ C R+Y + ++P YA+ L+ CP+ D + + D TP D
Sbjct: 168 AHTIGQAQCTAFRTRIYN--ESNIDPTYAKSLQANCPSVGGDTNLSPF---DVTTPNKFD 222
Query: 61 NNYYKNIINHKGLLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENNPLTGD 120
N YY N+ N KGLL DQQL + T V + + + F+ F A+ + +PLTG
Sbjct: 223 NAYYINLRNKKGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGT 282
Query: 121 QGEVRKDCRYVN 132
G++R +CR N
Sbjct: 283 SGQIRTNCRKTN 294
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 68/139 (48%), Gaps = 10/139 (7%)
Query: 1 AHSVGRVHCANLVHRLY-----PTVDPTLNPVYAEYLKGRCPTPDPDPDAVVYARNDRET 55
H+ GR C+ ++RLY DPTLN Y E L+ RCP + D T
Sbjct: 168 GHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQ---NATGDNLTNLDLST 224
Query: 56 PMILDNNYYKNIINHKGLLIVDQQLASDPR--TTPFVQKMAADNSYFHEQFSRAIALLSE 113
P DN YY N++ GLL DQ+L S P T P V +++ + F F ++ +
Sbjct: 225 PDQFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGN 284
Query: 114 NNPLTGDQGEVRKDCRYVN 132
LTGD+GE+R C +VN
Sbjct: 285 IGVLTGDEGEIRLQCNFVN 303
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 10/139 (7%)
Query: 1 AHSVGRVHCANLVHRLY-----PTVDPTLNPVYAEYLKGRCPTPDPDPDAVVYARNDRET 55
AH+ GR C +RL+ DPTLN L+ CP + D T
Sbjct: 170 AHTFGRATCGVFSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNL---DLST 226
Query: 56 PMILDNNYYKNIINHKGLLIVDQQLAS--DPRTTPFVQKMAADNSYFHEQFSRAIALLSE 113
P DNNY+ N+ ++ GLL DQ+L S T V A++ + F + F++++ +
Sbjct: 227 PDAFDNNYFTNLQSNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGN 286
Query: 114 NNPLTGDQGEVRKDCRYVN 132
+PLTG GE+R DC+ N
Sbjct: 287 ISPLTGSSGEIRLDCKKTN 305
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 1 AHSVGRVHCANLVHRLYPTV-----DPTLNPVYAEYLKGRCPTPDPDPDAVVYARNDRET 55
AH+ G+ CA +RL+ D TL L+ CP ++ + A DR T
Sbjct: 164 AHTFGQAKCAVFSNRLFNFTGAGNPDATLETSLLSNLQTVCPLGG---NSNITAPLDRST 220
Query: 56 PMILDNNYYKNIINHKGLLIVDQQLASDP----RTTPFVQKMAADNSYFHEQFSRAIALL 111
DNNY+KN++ KGLL DQ L S T V+ + S F F+ A++
Sbjct: 221 TDTFDNNYFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFT--CAMI 278
Query: 112 SENNPLTGDQGEVRKDCRYVN 132
N G GEVR +CR +N
Sbjct: 279 RMGNISNGASGEVRTNCRVIN 299
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 56 PMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALL 111
P+I DN+Y+ +++ +GLL + D+ L SDP P V K AAD F ++ A L
Sbjct: 182 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 241
Query: 112 SE 113
SE
Sbjct: 242 SE 243
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 56 PMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALL 111
P+I DN+Y+ +++ +GLL + D+ L SDP P V K AAD F ++ A L
Sbjct: 182 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 241
Query: 112 SE 113
SE
Sbjct: 242 SE 243
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 56 PMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALL 111
P+I DN+Y+ +++ +GLL + D+ L SDP P V K AAD F ++ A L
Sbjct: 194 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
Query: 112 SE 113
SE
Sbjct: 254 SE 255
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 56 PMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALL 111
P+I DN+Y+ +++ +GLL + D+ L SDP P V K AAD F ++ A L
Sbjct: 182 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 241
Query: 112 SE 113
SE
Sbjct: 242 SE 243
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 56 PMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALL 111
P+I DN+Y+ +++ +GLL + D+ L SDP P V K AAD F ++ A L
Sbjct: 194 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
Query: 112 SE 113
SE
Sbjct: 254 SE 255
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 56 PMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALL 111
P+I DN+Y+ +++ +GLL + D+ L SDP P V K AAD F ++ A L
Sbjct: 194 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
Query: 112 SE 113
SE
Sbjct: 254 SE 255
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 56 PMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALL 111
P+I DN+Y+ +++ +GLL + D+ L SDP P V K AAD F ++ A L
Sbjct: 194 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
Query: 112 SE 113
SE
Sbjct: 254 SE 255
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 56 PMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALL 111
P+I DN+Y+ +++ +GLL + D+ L SDP P V K AAD F ++ A L
Sbjct: 182 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 241
Query: 112 SE 113
SE
Sbjct: 242 SE 243
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 56 PMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALL 111
P+I DN+Y+ +++ +GLL + D+ L SDP P V K AAD F ++ A L
Sbjct: 194 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
Query: 112 SE 113
SE
Sbjct: 254 SE 255
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 56 PMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALL 111
P+I DN+Y+ +++ +GLL + D+ L SDP P V K AAD F ++ A L
Sbjct: 194 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
Query: 112 SE 113
SE
Sbjct: 254 SE 255
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 56 PMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALL 111
P+I DN+Y+ +++ +GLL + D+ L SDP P V K AAD F ++ A L
Sbjct: 194 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
Query: 112 SE 113
SE
Sbjct: 254 SE 255
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 56 PMILDNNYYKNIINHK--GLLIV--DQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALL 111
P+I DN+Y+ ++ + GLL + D+ L +D P V+K AAD F ++ A L
Sbjct: 182 PLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKL 241
Query: 112 SE 113
SE
Sbjct: 242 SE 243
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 19/78 (24%)
Query: 56 PMILDNNYYKNIINHKG-------------------LLIVDQQLASDPRTTPFVQKMAAD 96
P + DN++Y N++N +L D L DP+ V++ A D
Sbjct: 195 PNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYAND 254
Query: 97 NSYFHEQFSRAIALLSEN 114
F + FS+A L EN
Sbjct: 255 QDKFFKDFSKAFEKLLEN 272
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 32.3 bits (72), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 57 MILDNNYYKNIINHKG----LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLS 112
+ DN+Y+K+I + +L D L DP + +K AAD F + ++ A A LS
Sbjct: 200 LKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADPEAFFKDYAEAHAKLS 259
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 45/131 (34%), Gaps = 50/131 (38%)
Query: 34 GRCPTPDPDPDAV--VYAR---NDRE--------------------------TPMILDNN 62
GR P D D D V + R NDRE T + DN+
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKNSGYEGPWDATNNVFDNS 201
Query: 63 YYKNIINHKG-------------------LLIVDQQLASDPRTTPFVQKMAADNSYFHEQ 103
+Y N++N +L D L DP+ V++ A D F +
Sbjct: 202 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 261
Query: 104 FSRAIALLSEN 114
FS+A L EN
Sbjct: 262 FSKAFEKLLEN 272
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 19/76 (25%)
Query: 58 ILDNNYYKNIINHKG-------------------LLIVDQQLASDPRTTPFVQKMAADNS 98
+ DN++Y N++N +L D L DP+ V++ A D
Sbjct: 197 VFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 256
Query: 99 YFHEQFSRAIALLSEN 114
F + FS+A L EN
Sbjct: 257 KFFKDFSKAFEKLLEN 272
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 19/76 (25%)
Query: 58 ILDNNYYKNIINHKGLLI-------------------VDQQLASDPRTTPFVQKMAADNS 98
+ DN++Y N++N L D L DP+ V++ A D
Sbjct: 197 VFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQD 256
Query: 99 YFHEQFSRAIALLSEN 114
F + FS+A L EN
Sbjct: 257 KFFKDFSKAFEKLLEN 272
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 19/76 (25%)
Query: 58 ILDNNYYKNIINHKGLLI-------------------VDQQLASDPRTTPFVQKMAADNS 98
+ DN++Y N++N L D L DP+ V++ A D
Sbjct: 197 VFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQD 256
Query: 99 YFHEQFSRAIALLSEN 114
F + FS+A L EN
Sbjct: 257 KFFKDFSKAFEKLLEN 272
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 19/77 (24%)
Query: 58 ILDNNYYKNIINHKG-------------------LLIVDQQLASDPRTTPFVQKMAADNS 98
+ N YY N++N +L D L DP+ V++ A D
Sbjct: 194 VFTNEYYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 253
Query: 99 YFHEQFSRAIALLSENN 115
F + FS+A L EN
Sbjct: 254 KFFKDFSKAFEKLLENG 270
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 233 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 231 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 228 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 270
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 230 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 272
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 231 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 228 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 270
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 233 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 231 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 233 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 228 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 270
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 226 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 268
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 229 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 271
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 233 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 233 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 233 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 231 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 232 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 274
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 231 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 233 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 227 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 269
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 233 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 228 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 270
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 231 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSEN 114
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 231 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 233 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 231 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 231 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 228 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 270
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 231 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 234 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 276
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 233 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 229 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 271
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 233 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 231 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 233 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 233 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 233 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 228 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 270
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 231 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 230 MLPTDYSLIQDPKYLSIVKEYANDQDRFFKDFSKAFEKLLENG 272
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 224 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 266
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 74 LIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
L D L DP+ V++ A D F + FS+A L EN
Sbjct: 229 LPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 270
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L + L DP+ V++ A D F + FS+A L EN
Sbjct: 234 MLPTEYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 276
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L E+
Sbjct: 228 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDG 270
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L E+
Sbjct: 228 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDG 270
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L E+
Sbjct: 228 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDG 270
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L E+
Sbjct: 231 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDG 273
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L E+
Sbjct: 231 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDG 273
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L E+
Sbjct: 229 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDG 271
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L E+
Sbjct: 228 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDG 270
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L D L DP+ V++ A D F + FS+A L E+
Sbjct: 228 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDG 270
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L + L DP+ V++ A D F + FS+A L EN
Sbjct: 233 MLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L + L DP+ V++ A D F + FS+A L EN
Sbjct: 231 MLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of
Slow Type Myosin-Binding Protein C
Length = 120
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 85 RTTPFVQKMAADNSYFHEQFSRAIALLSENNPLTGDQGEVRKDCR 129
RT+ + ++ N Y+ FS + LSE+ +T + + +D +
Sbjct: 73 RTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGK 117
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
+L L DP+ V++ A D F + FS+A L EN
Sbjct: 231 MLPTXYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 80 LASDPRTTPFVQKMAADNSYFHEQFSRAIALLSENN 115
L DP+ V++ A D F + FS+A L EN
Sbjct: 241 LIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 276
>pdb|1K1X|A Chain A, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
pdb|1K1X|B Chain B, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
pdb|1K1Y|A Chain A, Crystal Structure Of Thermococcus Litoralis
4-Alpha-Glucanotransferase Complexed With Acarbose
pdb|1K1Y|B Chain B, Crystal Structure Of Thermococcus Litoralis
4-Alpha-Glucanotransferase Complexed With Acarbose
Length = 659
Score = 26.6 bits (57), Expect = 4.6, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 70 HKGLLIVDQQLASDPRTTPFVQKMAADNSYFHEQF 104
HK +L+V + + +P ++ K +++Y+H F
Sbjct: 327 HKRMLMVSKAVRDNPEARKYILKAQCNDAYWHGVF 361
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSE 113
+L D L DP +V+ A DN F++ F+ A L+E
Sbjct: 216 MLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTE 256
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 25.4 bits (54), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 73 LLIVDQQLASDPRTTPFVQKMAADNSYFHEQFSRAIALLSE 113
+L D L DP +V+ A DN F++ F+ A L+E
Sbjct: 217 MLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTE 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,510,257
Number of Sequences: 62578
Number of extensions: 187631
Number of successful extensions: 487
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 112
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)