Query 044744
Match_columns 258
No_of_seqs 139 out of 699
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:20:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1607 Protein transporter of 100.0 3.3E-51 7.2E-56 372.2 20.4 203 20-240 45-247 (318)
2 COG5058 LAG1 Protein transport 100.0 1.2E-47 2.5E-52 345.4 16.9 202 20-241 113-317 (395)
3 KOG1608 Protein transporter of 100.0 8.2E-39 1.8E-43 285.3 12.6 218 17-255 73-294 (374)
4 smart00724 TLC TRAM, LAG1 and 100.0 1.5E-30 3.2E-35 224.2 11.1 161 74-242 1-164 (205)
5 PF03798 TRAM_LAG1_CLN8: TLC d 99.9 3E-24 6.4E-29 182.2 9.9 155 75-240 1-162 (198)
6 PF08390 TRAM1: TRAM1-like pro 98.5 2.3E-07 4.9E-12 66.9 5.5 39 19-57 24-62 (65)
7 KOG4474 Uncharacterized conser 95.0 0.034 7.4E-07 50.0 4.5 140 73-227 43-187 (253)
8 KOG4561 Uncharacterized conser 47.1 11 0.00024 34.7 1.6 77 155-237 138-221 (281)
9 PRK13454 F0F1 ATP synthase sub 22.7 2.9E+02 0.0062 23.4 6.2 28 27-54 34-61 (181)
10 PRK08476 F0F1 ATP synthase sub 20.5 2.9E+02 0.0063 22.3 5.6 29 25-53 8-36 (141)
No 1
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-51 Score=372.20 Aligned_cols=203 Identities=44% Similarity=0.803 Sum_probs=187.5
Q ss_pred CcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccccchhhhhhhhhhhhhhHHHHHHHhhhhhheeeec
Q 044744 20 EARDFLALPFFAIFFPTVRLVLDKCVFENLARRLIIGKGHARINFGTQIKRQKINKFKESAWKCVYFFSAELLALVVSYD 99 (258)
Q Consensus 20 ~~~Dl~~~~~~ai~~~iiR~~l~~~v~~pl~~~l~~~~~~~~~~~~~~~~~~k~~Kf~Es~w~~~~y~~s~~~g~~vl~~ 99 (258)
+..|.++..+++..++..|....-.+..|...+.+... +.+.+||+||+|+++||++++++|++++++
T Consensus 45 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~------------~~~~~k~~Es~Wk~~yy~~s~~~glyV~~~ 112 (318)
T KOG1607|consen 45 GASDICFLRFYLLFFTFTRLFLMLLVGRPFPLRLNVTA------------DRRKKKFCESAWKFLYYLVSWIFGLYVMYH 112 (318)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCcC------------chhhhhhHHHHHHHHHHHHHHHHhhhheec
Confidence 45799999999999999998887777777777654321 122299999999999999999999999999
Q ss_pred CCCCCChhhhhcCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHhhccee
Q 044744 100 EPWFTNTKYFWEGPGNQAWPYQKTKLKLKGLYMYVGGFYAYSILALLVWETRRSDFGVSMAHHVATVILIVLSYILRFTR 179 (258)
Q Consensus 100 ~~w~~~~~~~w~g~~~~~~P~~~~~~~~~~yYl~q~afy~~~~~~l~f~e~kRkDf~em~~HH~~Tl~Li~~SY~~nf~R 179 (258)
+||+.|++++|.| ||++++++++|+||++|.|||.|+++.+ +.|++||||+||++||++|++||.+||+.||+|
T Consensus 113 ~~wf~~~k~~w~~-----yP~~~~~~~~k~~Y~~e~gfY~~~l~al-~~d~~rkDf~~m~vHHvvTl~Li~lSy~~~f~R 186 (318)
T KOG1607|consen 113 EPWFYDTKSFWEG-----YPDQTLPPSFKAYYLLEAGFYIQLLFAL-FLDEKRKDFWEMVVHHVVTLILISLSYVFNFTR 186 (318)
T ss_pred chhhcCHHHHHhc-----CCCCCCCHHHHHHHHHhhHHHHHHHHHH-HhhccccHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999 9999999999999999999999999965 688999999999999999999999999999999
Q ss_pred eceEEEEecccchhHHHHhhhhcccCchhhhhHHHHHHHHHHHHHhHHHHHHHHHHhhhhh
Q 044744 180 VGSVVLAVHDVSDIFLEVAKMSKYSGIEWIASISFIVFVCSWTVLRIIYYPFWVIWSTSYE 240 (258)
Q Consensus 180 iG~lVl~lHDisDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~p~~vl~s~~~~ 240 (258)
+|.+|+++||+||++||++|++||.+.+.+|+.+|++|+.+|+++||+++|+|+++|+..+
T Consensus 187 ~G~lil~lhD~SD~~Le~~K~~nY~~~~~~~~~~F~~F~~~wi~~RL~~~p~wil~st~~~ 247 (318)
T KOG1607|consen 187 VGTLILALHDASDVFLELGKMLNYLQFEAIADFVFVLFAFSWIYTRLIYYPFWILRSTSRE 247 (318)
T ss_pred ccceeeeeecchHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999854
No 2
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.2e-47 Score=345.36 Aligned_cols=202 Identities=31% Similarity=0.533 Sum_probs=189.1
Q ss_pred CcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccccchhhhhhhhhhhhhhHHHHHHHhhhhhheeeec
Q 044744 20 EARDFLALPFFAIFFPTVRLVLDKCVFENLARRLIIGKGHARINFGTQIKRQKINKFKESAWKCVYFFSAELLALVVSYD 99 (258)
Q Consensus 20 ~~~Dl~~~~~~ai~~~iiR~~l~~~v~~pl~~~l~~~~~~~~~~~~~~~~~~k~~Kf~Es~w~~~~y~~s~~~g~~vl~~ 99 (258)
|+.|++++++++++++.+|.+++..|.+|++..++++. ++|++|||||+|.++||++++.+|+|++++
T Consensus 113 G~~d~~F~lfy~ifftf~ref~md~virpf~l~~~v~s------------~kkikRf~eq~y~~fyy~v~g~~Glyvmrs 180 (395)
T COG5058 113 GILDLCFVLFYMIFFTFLREFLMDVVIRPFGLELNVRS------------EKKIKRFCEQMYAIFYYGVSGPFGLYVMRS 180 (395)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC------------HHHHHHHHHHHHHHHHhhccccceEEEEec
Confidence 57899999999999999999999999999999987752 688999999999999999999999999999
Q ss_pred CC-CCCChhhhhcCCCCCCCCCCcccchhHHHHHHHHHHHHHH--HHHHHHhhhccchhhHHHHHHHHHHHHHHHHHhhc
Q 044744 100 EP-WFTNTKYFWEGPGNQAWPYQKTKLKLKGLYMYVGGFYAYS--ILALLVWETRRSDFGVSMAHHVATVILIVLSYILR 176 (258)
Q Consensus 100 ~~-w~~~~~~~w~g~~~~~~P~~~~~~~~~~yYl~q~afy~~~--~~~l~f~e~kRkDf~em~~HH~~Tl~Li~~SY~~n 176 (258)
+| |+.|++.+|.+ ||+...|..+|.||++|+|||.+| ++. +..|++||||+||+.||++|++||..||..|
T Consensus 181 s~~w~fntk~l~et-----yp~~~~p~lfk~fYliqaafw~qQa~ilv-LqlEkprkD~~elv~HHIVTllLI~lSY~fh 254 (395)
T COG5058 181 SPLWFFNTKALYET-----YPVFYNPFLFKAFYLIQAAFWAQQACILV-LQLEKPRKDFKELVFHHIVTLLLIWLSYVFH 254 (395)
T ss_pred CcchhhhhHHHHHh-----CccccCcHHHHHHHHHHHHHHHHHHhhhe-eeecchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 77799999998 999999999999999999999999 443 4589999999999999999999999999999
Q ss_pred ceeeceEEEEecccchhHHHHhhhhcccCchhhhhHHHHHHHHHHHHHhHHHHHHHHHHhhhhhh
Q 044744 177 FTRVGSVVLAVHDVSDIFLEVAKMSKYSGIEWIASISFIVFVCSWTVLRIIYYPFWVIWSTSYEV 241 (258)
Q Consensus 177 f~RiG~lVl~lHDisDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~p~~vl~s~~~~~ 241 (258)
|+|+|+.|.+.||+||++|+.+|++||++. .+|+..|++|+.+|+++|+++. +.|+|+++.+.
T Consensus 255 ftr~GlAI~itmDvSD~~Ls~sK~lnYl~~-~l~~~iF~iFv~~wIysRHyln-~kIlw~vlt~~ 317 (395)
T COG5058 255 FTRMGLAIYITMDVSDFFLSLSKTLNYLNS-VLATFIFGIFVFIWIYSRHYLN-LKILWSVLTAF 317 (395)
T ss_pred HHhccceEEEEEeccHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhch
Confidence 999999999999999999999999999996 8899999999999999999766 58999987743
No 3
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.2e-39 Score=285.35 Aligned_cols=218 Identities=16% Similarity=0.352 Sum_probs=206.0
Q ss_pred CCCCcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccccchhhhhhhhhhhhhhHHHHHHHhhhhhhee
Q 044744 17 SYPEARDFLALPFFAIFFPTVRLVLDKCVFENLARRLIIGKGHARINFGTQIKRQKINKFKESAWKCVYFFSAELLALVV 96 (258)
Q Consensus 17 ~~p~~~Dl~~~~~~ai~~~iiR~~l~~~v~~pl~~~l~~~~~~~~~~~~~~~~~~k~~Kf~Es~w~~~~y~~s~~~g~~v 96 (258)
.+.|++|++.+++|.++++++|+++||+++|++.+|++++ |.|..||+||++..+||..|.+||.++
T Consensus 73 Y~yGikDl~tifFY~l~~IIiHAviQEyvLDKIsKr~hlS-------------K~k~~kFnESgql~~Fy~~S~vwg~~i 139 (374)
T KOG1608|consen 73 YYYGIKDLATIFFYMLVAIIIHAVIQEYVLDKISKRLHLS-------------KVKHSKFNESGQLVAFYLFSCVWGFYI 139 (374)
T ss_pred eeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------HhhhhhhccCCeeeehhhHHhhhhhee
Confidence 4668899999999999999999999999999999999987 588999999999999999999999999
Q ss_pred eecCCCCCChhhhhcCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHhhc
Q 044744 97 SYDEPWFTNTKYFWEGPGNQAWPYQKTKLKLKGLYMYVGGFYAYSILALLVWETRRSDFGVSMAHHVATVILIVLSYILR 176 (258)
Q Consensus 97 l~~~~w~~~~~~~w~g~~~~~~P~~~~~~~~~~yYl~q~afy~~~~~~l~f~e~kRkDf~em~~HH~~Tl~Li~~SY~~n 176 (258)
+..|+++.|++..|.| ||+++|+...|+||+.|+|||+|++++++|+++||+|....+.|-+..+.+|+++|.+|
T Consensus 140 li~E~yl~~p~~lW~~-----yPh~~msfq~Kffyi~QlaYwlHafPElYfQK~Kkeeiprqlvyi~l~l~hI~gAYlln 214 (374)
T KOG1608|consen 140 LISEGYLSDPTSLWEG-----YPHRVMSFQMKFFYISQLAYWLHAFPELYFQKTKKEEIPRQLVYIILHLFHIAGAYLLN 214 (374)
T ss_pred eeecccccChHHHHhc-----CCCchhhHHHHHHHHHHHHHHHHHChHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeceEEEEecccchhHHHHhhhhcccCchhhhhHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhh----ccccCCCC
Q 044744 177 FTRVGSVVLAVHDVSDIFLEVAKMSKYSGIEWIASISFIVFVCSWTVLRIIYYPFWVIWSTSYEVLLN----FNKENHQM 252 (258)
Q Consensus 177 f~RiG~lVl~lHDisDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~p~~vl~s~~~~~~~~----~~~~~~~~ 252 (258)
+.|+|.+.+.+|++++.+.|+++++.+.+.+ .+.+|.+|+.+|+..|+.....-|+ +.+++..+. +|.+.|++
T Consensus 215 l~rlgLvLl~LhYftellfHi~rlfyf~dek--~~k~fslwa~vF~l~Rl~tliiaVl-t~gfgla~~en~~~D~~~GNf 291 (374)
T KOG1608|consen 215 LNRLGLVLLTLHYFTELLFHIARLFYFSDEK--YQKLFSLWAAVFVLGRLGTLIIAVL-TVGFGLAGAENQFVDISTGNF 291 (374)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHheecccc--hhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhccccccCCCcccCch
Confidence 9999999999999999999999999999966 6889999999999999999887776 778876653 88999988
Q ss_pred CCC
Q 044744 253 DGP 255 (258)
Q Consensus 253 ~~~ 255 (258)
|..
T Consensus 292 N~l 294 (374)
T KOG1608|consen 292 NTL 294 (374)
T ss_pred hHH
Confidence 864
No 4
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=99.97 E-value=1.5e-30 Score=224.15 Aligned_cols=161 Identities=33% Similarity=0.643 Sum_probs=149.0
Q ss_pred hhhhhhhhHHHHHHHhhhhhheeeecCCCCCChhhhhcCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHH-Hhhhcc
Q 044744 74 NKFKESAWKCVYFFSAELLALVVSYDEPWFTNTKYFWEGPGNQAWPYQKTKLKLKGLYMYVGGFYAYSILALL-VWETRR 152 (258)
Q Consensus 74 ~Kf~Es~w~~~~y~~s~~~g~~vl~~~~w~~~~~~~w~g~~~~~~P~~~~~~~~~~yYl~q~afy~~~~~~l~-f~e~kR 152 (258)
+|++|+.||+++|+.+++.|.++++.++|++|+. .+ +|.++.++..+++|.+|+||++++++... +.|.+|
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~~~~~~---~~-----~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~ 72 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPWLSDPK---SL-----YPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKR 72 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCcccCCc---cc-----CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 4899999999999999999999999999988887 44 89999999999999999999999998765 689999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhcceeeceEEEEecccchhHHHHhhhhcccCch--hhhhHHHHHHHHHHHHHhHHHHH
Q 044744 153 SDFGVSMAHHVATVILIVLSYILRFTRVGSVVLAVHDVSDIFLEVAKMSKYSGIE--WIASISFIVFVCSWTVLRIIYYP 230 (258)
Q Consensus 153 kDf~em~~HH~~Tl~Li~~SY~~nf~RiG~lVl~lHDisDi~L~~aK~~~y~~~~--~~~~~~F~~f~~~w~~~Rl~~~p 230 (258)
||++||++||++|++++..||..|++|.|.+++++||+||++++++|++++++.+ .+.+..+++|+++|+++|++.+|
T Consensus 73 ~d~~~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p 152 (205)
T smart00724 73 KDFKEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFP 152 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999974 67889999999999999999999
Q ss_pred HHHHHhhhhhhh
Q 044744 231 FWVIWSTSYEVL 242 (258)
Q Consensus 231 ~~vl~s~~~~~~ 242 (258)
+.++++...+..
T Consensus 153 ~~~~~~~~~~~~ 164 (205)
T smart00724 153 FLILTVTVHYAQ 164 (205)
T ss_pred HHHHHHHhhhhh
Confidence 888766655443
No 5
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=99.91 E-value=3e-24 Score=182.16 Aligned_cols=155 Identities=26% Similarity=0.586 Sum_probs=136.8
Q ss_pred hhhhhhhHHHHHHHhhhhhheeeecCCCCCChhhhhcCCCCCCCCCCc---ccchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 044744 75 KFKESAWKCVYFFSAELLALVVSYDEPWFTNTKYFWEGPGNQAWPYQK---TKLKLKGLYMYVGGFYAYSILALLVWETR 151 (258)
Q Consensus 75 Kf~Es~w~~~~y~~s~~~g~~vl~~~~w~~~~~~~w~g~~~~~~P~~~---~~~~~~~yYl~q~afy~~~~~~l~f~e~k 151 (258)
||+|+.+.++++++++++|++++.++| ++|.+ ||+.+ .+...+.++..++||++++++..+..+++
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~------~~~~~-----~~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~ 69 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDP------ELWSD-----WPDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRK 69 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCc------HHhhh-----cccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 789999999999999999999999988 55555 44443 34578899999999999999977777878
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhcceeeceEEEEecccchhHHHHhhhhccc-Cc-hhhhhHHH--HHHHHHHHHHhHH
Q 044744 152 RSDFGVSMAHHVATVILIVLSYILRFTRVGSVVLAVHDVSDIFLEVAKMSKYS-GI-EWIASISF--IVFVCSWTVLRII 227 (258)
Q Consensus 152 RkDf~em~~HH~~Tl~Li~~SY~~nf~RiG~lVl~lHDisDi~L~~aK~~~y~-~~-~~~~~~~F--~~f~~~w~~~Rl~ 227 (258)
|+|+++|++||++|+.++..||..|+.|.|++++++||+||+|+++.|++++. +. +......+ ++|+++|+.+|++
T Consensus 70 ~~d~~~~~~HH~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~ 149 (198)
T PF03798_consen 70 RGDFWEMLLHHVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIV 149 (198)
T ss_pred hhhhhHhhHHHHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999 55 46667788 9999999999999
Q ss_pred HHHHHHHHhhhhh
Q 044744 228 YYPFWVIWSTSYE 240 (258)
Q Consensus 228 ~~p~~vl~s~~~~ 240 (258)
.+|+.+.+.....
T Consensus 150 ~~~~~~~~~~~~~ 162 (198)
T PF03798_consen 150 LFPYLIYWVYWDV 162 (198)
T ss_pred HHHHHHHHHHHHh
Confidence 9998777665433
No 6
>PF08390 TRAM1: TRAM1-like protein; InterPro: IPR013599 This family comprises sequences that are similar to human TRAM1 (Q15629 from SWISSPROT). This is a transmembrane protein of the endoplasmic reticulum, thought to be involved in the membrane transfer of secretory proteins []. The region featured in this family is found N-terminal to the longevity-assurance protein region (IPR005547 from INTERPRO).
Probab=98.50 E-value=2.3e-07 Score=66.85 Aligned_cols=39 Identities=33% Similarity=0.450 Sum_probs=36.4
Q ss_pred CCcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 044744 19 PEARDFLALPFFAIFFPTVRLVLDKCVFENLARRLIIGK 57 (258)
Q Consensus 19 p~~~Dl~~~~~~ai~~~iiR~~l~~~v~~pl~~~l~~~~ 57 (258)
.|++|++++++++++++++|++++++|++|+||++++++
T Consensus 24 ~G~~D~~fV~fy~i~~t~lRa~~m~yvl~Plar~~gi~k 62 (65)
T PF08390_consen 24 KGWDDLYFVFFYIIVFTFLRAFLMEYVLDPLARKLGISK 62 (65)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 467999999999999999999999999999999998874
No 7
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.034 Score=50.00 Aligned_cols=140 Identities=19% Similarity=0.297 Sum_probs=90.0
Q ss_pred hhhhhhhhhHHHHHHHhhhhhheeeecCC-CCCChhhhhcCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 044744 73 INKFKESAWKCVYFFSAELLALVVSYDEP-WFTNTKYFWEGPGNQAWPYQKTKLKLKGLYMYVGGFYAYSILALLVWETR 151 (258)
Q Consensus 73 ~~Kf~Es~w~~~~y~~s~~~g~~vl~~~~-w~~~~~~~w~g~~~~~~P~~~~~~~~~~yYl~q~afy~~~~~~l~f~e~k 151 (258)
..||....=.++.-+++..++.+.+.+.| -.-|+-.++-. .. .---+..+||.++...-.. .+++
T Consensus 43 ~~r~~n~~VSl~HS~Isg~~a~~~l~~~~~~~~~~~~~~s~-------~~------~~l~~fS~gYfiyD~vDm~-~~~~ 108 (253)
T KOG4474|consen 43 KKRFSNLTVSLLHSTISGLWALLSLLYDPEMVDDPITYHSL-------SA------YQLLLFSAGYFIYDLVDML-MNEQ 108 (253)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHhh-------hh------HHHHHHHHHHHHHHHHHHH-hcch
Confidence 34666666666777777777777766665 22233333211 11 1223567799999988654 5555
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhc-ceeeceEEEEecccchhHHHHhhhhcccCchhh---hhHHHHHHHHHHHHHhHH
Q 044744 152 RSDFGVSMAHHVATVILIVLSYILR-FTRVGSVVLAVHDVSDIFLEVAKMSKYSGIEWI---ASISFIVFVCSWTVLRII 227 (258)
Q Consensus 152 RkDf~em~~HH~~Tl~Li~~SY~~n-f~RiG~lVl~lHDisDi~L~~aK~~~y~~~~~~---~~~~F~~f~~~w~~~Rl~ 227 (258)
-.+.+|.+.||++++.=.+..-..| +.- ++...++..+++||||.=++.+-++.++- -.+.-.+-.+.++.+|++
T Consensus 109 s~~s~e~LvHH~v~i~aF~~~lf~~~~~~-~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~~ 187 (253)
T KOG4474|consen 109 SELSWEYLVHHVVCIIAFVLGLFYSKFLG-YVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRLI 187 (253)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhc
Confidence 6789999999999876444332222 222 45667789999999999998888775431 233444556778888874
No 8
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=47.14 E-value=11 Score=34.67 Aligned_cols=77 Identities=17% Similarity=0.323 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcceeec-----eEEEEecccchhHHHHhhhhcccCchhh-h-hHHHHHHHHHHHHHhHH
Q 044744 155 FGVSMAHHVATVILIVLSYILRFTRVG-----SVVLAVHDVSDIFLEVAKMSKYSGIEWI-A-SISFIVFVCSWTVLRII 227 (258)
Q Consensus 155 f~em~~HH~~Tl~Li~~SY~~nf~RiG-----~lVl~lHDisDi~L~~aK~~~y~~~~~~-~-~~~F~~f~~~w~~~Rl~ 227 (258)
-.+|++||++.+..+ + -..|=| .-.+++-..|-+|+.....+.-++.++. . .+-=.+..++|+..|+.
T Consensus 138 ~~~fviHh~~s~~~v-~----~~~~~~~g~y~~~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIl 212 (281)
T KOG4561|consen 138 GIEFVIHHIASLVFV-G----CLLRRGVGQYYAGTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARIL 212 (281)
T ss_pred CeeEEeeHHHHhhhh-e----eeEecCccceeeeeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHH
Confidence 368999999982221 1 122223 3455677899999999988888876642 1 23334567889999999
Q ss_pred HHHHHHHHhh
Q 044744 228 YYPFWVIWST 237 (258)
Q Consensus 228 ~~p~~vl~s~ 237 (258)
.+|. +-|..
T Consensus 213 l~~~-~~~~~ 221 (281)
T KOG4561|consen 213 LWPY-MGWHY 221 (281)
T ss_pred HHHH-HHHHH
Confidence 8884 33333
No 9
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=22.68 E-value=2.9e+02 Score=23.37 Aligned_cols=28 Identities=11% Similarity=0.291 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044744 27 LPFFAIFFPTVRLVLDKCVFENLARRLI 54 (258)
Q Consensus 27 ~~~~ai~~~iiR~~l~~~v~~pl~~~l~ 54 (258)
++...+.+.++=+++.+++++|+.+-+-
T Consensus 34 ~~~~lI~F~iL~~ll~k~l~~PI~~~l~ 61 (181)
T PRK13454 34 IFWLLVTLVAIYFVLTRVALPRIGAVLA 61 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444666777778888999999998764
No 10
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=20.53 E-value=2.9e+02 Score=22.34 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044744 25 LALPFFAIFFPTVRLVLDKCVFENLARRL 53 (258)
Q Consensus 25 ~~~~~~ai~~~iiR~~l~~~v~~pl~~~l 53 (258)
...++-++.|+++=+++.+++++|+.+-+
T Consensus 8 ~~~~~qli~Flil~~~l~kfl~kPi~~~l 36 (141)
T PRK08476 8 YLMLATFVVFLLLIVILNSWLYKPLLKFM 36 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777777788889999998765
Done!