Query 044744
Match_columns 258
No_of_seqs 139 out of 699
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 10:49:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b9u_A Protein (ATP synthase); 15.4 1.8E+02 0.0062 16.5 4.3 27 27-53 7-33 (34)
2 2kih_A Matrix protein 2; S31N, 7.0 2.2E+02 0.0076 17.6 1.6 28 188-227 3-30 (43)
3 2qkl_B SPAC19A8.12 protein, SP 6.5 3.3E+02 0.011 19.8 2.7 51 118-168 23-77 (95)
4 3kae_A CDC27, possible protein 5.9 2.6E+02 0.009 23.4 2.0 19 191-209 3-21 (242)
5 2ljb_A M2 protein, BM2 protein 5.4 2.9E+02 0.01 16.4 1.5 28 188-227 3-30 (35)
6 2a6t_A SPAC19A8.12; alpha/beta 4.3 4.7E+02 0.016 22.0 2.8 49 118-166 28-80 (271)
7 1mn8_A Core protein P15; helic 4.3 2.6E+02 0.0091 20.7 0.9 18 66-83 29-46 (100)
8 2ql9_B Caspase-7; cysteine pro 4.2 5.2E+02 0.018 18.2 2.5 26 135-160 32-57 (97)
9 3arc_L Photosystem II reaction 4.1 5.7E+02 0.019 15.3 2.1 9 167-175 28-36 (37)
10 3jrt_A Integron cassette prote 3.8 5.4E+02 0.018 20.6 2.4 28 73-100 63-90 (192)
No 1
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=15.36 E-value=1.8e+02 Score=16.53 Aligned_cols=27 Identities=26% Similarity=0.145 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044744 27 LPFFAIFFPTVRLVLDKCVFENLARRL 53 (258)
Q Consensus 27 ~~~~ai~~~iiR~~l~~~v~~pl~~~l 53 (258)
.+.-++.+.++=.++.+++++|+.+-+
T Consensus 7 l~~~~i~Flil~~~l~kf~~~Pi~~~l 33 (34)
T 1b9u_A 7 ILGQAIAFVLFVLFCMKYVWPPLMAAI 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566677778888899999988653
No 2
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=7.04 E-value=2.2e+02 Score=17.55 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=16.1
Q ss_pred cccchhHHHHhhhhcccCchhhhhHHHHHHHHHHHHHhHH
Q 044744 188 HDVSDIFLEVAKMSKYSGIEWIASISFIVFVCSWTVLRII 227 (258)
Q Consensus 188 HDisDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~ 227 (258)
.|.||++.-+|.+ .=.+=.+.|+.-|++
T Consensus 3 ~dssdplv~aa~i------------iGIlHLiLwildRlf 30 (43)
T 2kih_A 3 NDSSDPLVVAANI------------IGILHLILWILDRLF 30 (43)
T ss_dssp ---CCHHHHHHHH------------HHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHH------------HHHHHHHHHHHHHHH
Confidence 4677776655543 334556788888884
No 3
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=6.48 E-value=3.3e+02 Score=19.79 Aligned_cols=51 Identities=8% Similarity=-0.012 Sum_probs=34.0
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHH-HH---hhhccchhhHHHHHHHHHHHH
Q 044744 118 WPYQKTKLKLKGLYMYVGGFYAYSILAL-LV---WETRRSDFGVSMAHHVATVIL 168 (258)
Q Consensus 118 ~P~~~~~~~~~~yYl~q~afy~~~~~~l-~f---~e~kRkDf~em~~HH~~Tl~L 168 (258)
=|....+...+.++.+|.|+|...=+.. .. -.-.-|||.+++.+|+-.+.-
T Consensus 23 ~P~eel~s~eRl~FqiEeA~WfY~Df~~~~np~Lp~~~lk~F~~~if~~cp~L~~ 77 (95)
T 2qkl_B 23 LPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCPLLWK 77 (95)
T ss_dssp CCGGGSSCHHHHHHHHHHHHHHHHHTTTTTCTTSCCCCHHHHHHHHHHHCTHHHH
T ss_pred CCHHHhhhHHHHHHHHHhheeehcccccccCCCCCCCcHHHHHHHHHHhCHHHHh
Confidence 5777788888999999999997532100 00 011236899999998765543
No 4
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=5.87 E-value=2.6e+02 Score=23.35 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=17.0
Q ss_pred chhHHHHhhhhcccCchhh
Q 044744 191 SDIFLEVAKMSKYSGIEWI 209 (258)
Q Consensus 191 sDi~L~~aK~~~y~~~~~~ 209 (258)
+|+.+++.|+++|.++++.
T Consensus 3 ~~~~~kI~Ks~kY~dYdt~ 21 (242)
T 3kae_A 3 SKLIGKICKSIRYRDYETA 21 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhcccccHH
Confidence 6899999999999998873
No 5
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=5.42 E-value=2.9e+02 Score=16.39 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=15.0
Q ss_pred cccchhHHHHhhhhcccCchhhhhHHHHHHHHHHHHHhHH
Q 044744 188 HDVSDIFLEVAKMSKYSGIEWIASISFIVFVCSWTVLRII 227 (258)
Q Consensus 188 HDisDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~ 227 (258)
.|.||++.-+|. +.=++=.+.|+.-|+.
T Consensus 3 ~dSsDplviaA~------------IigiLHlilWildrLf 30 (35)
T 2ljb_A 3 NDSSDPLVVAAS------------IIGILHFIAWTIGHLN 30 (35)
T ss_dssp ---CCTHHHHHH------------HHHHHHHHHHHHHTHH
T ss_pred CCCCCcHHHHHH------------HHHHHHHHHHHhhhhH
Confidence 466666554443 3334456778888874
No 6
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=4.34 E-value=4.7e+02 Score=22.03 Aligned_cols=49 Identities=8% Similarity=0.031 Sum_probs=34.4
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHHHh----hhccchhhHHHHHHHHHH
Q 044744 118 WPYQKTKLKLKGLYMYVGGFYAYSILALLVW----ETRRSDFGVSMAHHVATV 166 (258)
Q Consensus 118 ~P~~~~~~~~~~yYl~q~afy~~~~~~l~f~----e~kRkDf~em~~HH~~Tl 166 (258)
-|....+...++++.+|-|+|.+.=+...-. ...+++|...+.||.-.+
T Consensus 28 ~p~~~~~~~~~~~f~ie~a~wfy~d~~~~~~~~~p~~~~~~f~~~~f~~~~~l 80 (271)
T 2a6t_A 28 LPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCPLL 80 (271)
T ss_dssp SCGGGTTCHHHHHHHHHHHHHHHHHTHHHHCSSSCCCCHHHHHHHHHTTCHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHHhhhhcccCCCcccHHHHHHHHhhhhhhh
Confidence 5777777788999999999998753311100 134678989999998733
No 7
>1mn8_A Core protein P15; helical bundle, viral protein; 1.00A {Moloney murine leukemia virus} SCOP: a.61.1.6
Probab=4.25 E-value=2.6e+02 Score=20.67 Aligned_cols=18 Identities=17% Similarity=0.534 Sum_probs=14.4
Q ss_pred cchhhhhhhhhhhhhhHH
Q 044744 66 TQIKRQKINKFKESAWKC 83 (258)
Q Consensus 66 ~~~~~~k~~Kf~Es~w~~ 83 (258)
.+.||.|...|||+-|-.
T Consensus 29 V~vkk~~w~tfC~~EWPt 46 (100)
T 1mn8_A 29 VDVKKRRWVTFCSAEWPT 46 (100)
T ss_dssp CCCCHHHHHHHHHTTGGG
T ss_pred eEeecCceEEEEecccCc
Confidence 356789999999999864
No 8
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=4.17 E-value=5.2e+02 Score=18.22 Aligned_cols=26 Identities=8% Similarity=0.234 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhhccchhhHHHH
Q 044744 135 GGFYAYSILALLVWETRRSDFGVSMA 160 (258)
Q Consensus 135 ~afy~~~~~~l~f~e~kRkDf~em~~ 160 (258)
.++|++++...+-...++.|..+|+.
T Consensus 32 GSwfIq~Lc~~l~~~~~~~dl~~ilt 57 (97)
T 2ql9_B 32 GSWFVQALCSILEEHGKDLEIMQILT 57 (97)
T ss_dssp EEHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred CCeeHHHHHHHHHHhCCCCcHHHHHH
Confidence 56777788754322246678877764
No 9
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=4.07 E-value=5.7e+02 Score=15.33 Aligned_cols=9 Identities=33% Similarity=0.630 Sum_probs=3.8
Q ss_pred HHHHHHHhh
Q 044744 167 ILIVLSYIL 175 (258)
Q Consensus 167 ~Li~~SY~~ 175 (258)
.++..||..
T Consensus 28 avlFssyff 36 (37)
T 3arc_L 28 ALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhhhcc
Confidence 334444443
No 10
>3jrt_A Integron cassette protein VPC_CASS2; mobIle metagenome, structural genomics, PSI-2 protein structure initiative; 2.30A {Vibrio paracholerae}
Probab=3.84 E-value=5.4e+02 Score=20.60 Aligned_cols=28 Identities=7% Similarity=0.126 Sum_probs=18.8
Q ss_pred hhhhhhhhhHHHHHHHhhhhhheeeecC
Q 044744 73 INKFKESAWKCVYFFSAELLALVVSYDE 100 (258)
Q Consensus 73 ~~Kf~Es~w~~~~y~~s~~~g~~vl~~~ 100 (258)
.+-+.++.||++|+++..---=|+=.+.
T Consensus 63 ~kt~RQciwRLCf~SIViNCrKYVEln~ 90 (192)
T 3jrt_A 63 HQTKRQCIWRLCVYSIVINCRKYVELNQ 90 (192)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3456789999999987765444443333
Done!