Query 044744
Match_columns 258
No_of_seqs 139 out of 699
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 10:49:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044744.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044744hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qklb1 a.242.1.1 (B:2-91) mRN 17.8 43 0.0032 22.7 3.0 49 118-166 22-74 (90)
2 d1ml8a_ d.227.1.2 (A:) Hypothe 6.8 1.8E+02 0.013 19.6 3.5 28 16-43 31-58 (134)
3 d1ukka_ d.227.1.1 (A:) Hypothe 5.6 2.1E+02 0.015 19.5 3.2 28 16-43 40-67 (141)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 5.0 2.1E+02 0.015 15.7 2.1 8 168-175 29-36 (37)
5 d1qwia_ d.227.1.1 (A:) Osmotic 4.8 2.3E+02 0.017 19.4 3.0 29 15-43 41-69 (142)
6 d2pn2a1 d.227.1.1 (A:1-132) Un 4.8 2.8E+02 0.021 18.4 3.5 28 16-43 37-64 (132)
7 d1n2fa_ d.227.1.1 (A:) Organic 4.7 2.2E+02 0.016 19.4 2.7 27 17-43 45-71 (142)
8 d1uspa_ d.227.1.1 (A:) Organic 4.7 2.2E+02 0.016 19.1 2.7 27 17-43 40-66 (137)
9 d1vlaa_ d.227.1.2 (A:) Hypothe 4.7 2.9E+02 0.021 18.6 3.5 28 16-43 39-66 (144)
10 d1mn8a_ a.61.1.6 (A:) MMLV mat 3.9 1.4E+02 0.01 20.3 0.9 17 67-83 27-43 (95)
No 1
>d2qklb1 a.242.1.1 (B:2-91) mRNA decapping enzyme Dcp2p, N-terminal domain {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=17.80 E-value=43 Score=22.72 Aligned_cols=49 Identities=8% Similarity=0.015 Sum_probs=32.7
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHH-Hh---hhccchhhHHHHHHHHHH
Q 044744 118 WPYQKTKLKLKGLYMYVGGFYAYSILALL-VW---ETRRSDFGVSMAHHVATV 166 (258)
Q Consensus 118 ~P~~~~~~~~~~yYl~q~afy~~~~~~l~-f~---e~kRkDf~em~~HH~~Tl 166 (258)
=|....+.-.+.++.+|.|+|.+.=+... .- .-.-|||.+++.+|+-.+
T Consensus 22 ~P~eel~~~~rl~FqiE~A~WfY~Df~~~~~p~Lp~~~~~~Fa~~if~~cp~L 74 (90)
T d2qklb1 22 LPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCPLL 74 (90)
T ss_dssp CCGGGSSCHHHHHHHHHHHHHHHHHTTTTTCTTSCCCCHHHHHHHHHHHCTHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHCHHH
Confidence 57777888889999999999987422100 00 112368888888886543
No 2
>d1ml8a_ d.227.1.2 (A:) Hypothetical protein in CRP region {Escherichia coli [TaxId: 562]}
Probab=6.83 E-value=1.8e+02 Score=19.59 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=24.3
Q ss_pred CCCCCcChhhhHHHHHHHHHHHHHHHHH
Q 044744 16 ESYPEARDFLALPFFAIFFPTVRLVLDK 43 (258)
Q Consensus 16 ~~~p~~~Dl~~~~~~ai~~~iiR~~l~~ 43 (258)
...|+|.|++.....+|..+.++.+.++
T Consensus 31 ~~gp~P~elllaal~~C~~~~~~~~a~~ 58 (134)
T d1ml8a_ 31 DKAPSPMEMVLMAAGGCSAIDVVSILQK 58 (134)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999877765
No 3
>d1ukka_ d.227.1.1 (A:) Hypothetical protein MPN625 {Thermus thermophilus [TaxId: 274]}
Probab=5.64 E-value=2.1e+02 Score=19.50 Aligned_cols=28 Identities=11% Similarity=0.167 Sum_probs=24.1
Q ss_pred CCCCCcChhhhHHHHHHHHHHHHHHHHH
Q 044744 16 ESYPEARDFLALPFFAIFFPTVRLVLDK 43 (258)
Q Consensus 16 ~~~p~~~Dl~~~~~~ai~~~iiR~~l~~ 43 (258)
..-|++.|++...+-+|..+.+|.+.++
T Consensus 40 ~~gp~P~elllaala~C~~~~~~~~a~~ 67 (141)
T d1ukka_ 40 GEGTNPEELIAAAHAGCFSMALAASLER 67 (141)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999987766
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.05 E-value=2.1e+02 Score=15.74 Aligned_cols=8 Identities=38% Similarity=0.741 Sum_probs=3.4
Q ss_pred HHHHHHhh
Q 044744 168 LIVLSYIL 175 (258)
Q Consensus 168 Li~~SY~~ 175 (258)
.+..||.+
T Consensus 29 vLFssYfF 36 (37)
T d2axtl1 29 LLFSSYFF 36 (37)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 33444443
No 5
>d1qwia_ d.227.1.1 (A:) Osmotically inducible protein OsmC {Escherichia coli [TaxId: 562]}
Probab=4.84 E-value=2.3e+02 Score=19.39 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=24.7
Q ss_pred CCCCCCcChhhhHHHHHHHHHHHHHHHHH
Q 044744 15 YESYPEARDFLALPFFAIFFPTVRLVLDK 43 (258)
Q Consensus 15 ~~~~p~~~Dl~~~~~~ai~~~iiR~~l~~ 43 (258)
...-|+|.|++....-+|....+|.+.++
T Consensus 41 ~~~G~~P~elllaAlasC~~~~~~~~a~~ 69 (142)
T d1qwia_ 41 GEKGTNPEELIGAAHAACFSMALSLMLGE 69 (142)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34458999999999999999999988876
No 6
>d2pn2a1 d.227.1.1 (A:1-132) Uncharacterized protein Psyc0566 {Psychrobacter arcticus 273-4 [TaxId: 259536]}
Probab=4.82 E-value=2.8e+02 Score=18.38 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=23.6
Q ss_pred CCCCCcChhhhHHHHHHHHHHHHHHHHH
Q 044744 16 ESYPEARDFLALPFFAIFFPTVRLVLDK 43 (258)
Q Consensus 16 ~~~p~~~Dl~~~~~~ai~~~iiR~~l~~ 43 (258)
..-|+|.|++....-+|....++.+.++
T Consensus 37 ~~g~~P~eLllaala~C~~~~~~~~a~~ 64 (132)
T d2pn2a1 37 GEAFSPTDLLATSLASCMLTIIGIKARD 64 (132)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999888877765
No 7
>d1n2fa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Pseudomonas aeruginosa, pa01 [TaxId: 287]}
Probab=4.72 E-value=2.2e+02 Score=19.36 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=23.0
Q ss_pred CCCCcChhhhHHHHHHHHHHHHHHHHH
Q 044744 17 SYPEARDFLALPFFAIFFPTVRLVLDK 43 (258)
Q Consensus 17 ~~p~~~Dl~~~~~~ai~~~iiR~~l~~ 43 (258)
.-|+|.|++...+.+|..+.++.+.++
T Consensus 45 ~g~~P~elllaalasC~~~t~~~~a~~ 71 (142)
T d1n2fa_ 45 AATNPEQLFAAGYSACFIGAMKFVAGQ 71 (142)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999998888887765
No 8
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=4.65 E-value=2.2e+02 Score=19.07 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=22.8
Q ss_pred CCCCcChhhhHHHHHHHHHHHHHHHHH
Q 044744 17 SYPEARDFLALPFFAIFFPTVRLVLDK 43 (258)
Q Consensus 17 ~~p~~~Dl~~~~~~ai~~~iiR~~l~~ 43 (258)
.-|+|.|++....-+|..+.+|.+.++
T Consensus 40 ~g~~P~elllaAlasC~~~t~~~~a~~ 66 (137)
T d1uspa_ 40 PGTNPEQLFAAGYAACFQGALGVVSRR 66 (137)
T ss_dssp SCBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999888877665
No 9
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=4.65 E-value=2.9e+02 Score=18.59 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=23.4
Q ss_pred CCCCCcChhhhHHHHHHHHHHHHHHHHH
Q 044744 16 ESYPEARDFLALPFFAIFFPTVRLVLDK 43 (258)
Q Consensus 16 ~~~p~~~Dl~~~~~~ai~~~iiR~~l~~ 43 (258)
..-|+|.|++...+-+|....++.+..+
T Consensus 39 ~~g~~P~elllaala~C~~~~~~~~a~~ 66 (144)
T d1vlaa_ 39 DAAPRPLELVLTGLMGCTGMDVVSILRK 66 (144)
T ss_dssp SCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4568999999999999998888877654
No 10
>d1mn8a_ a.61.1.6 (A:) MMLV matrix protein {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=3.93 E-value=1.4e+02 Score=20.26 Aligned_cols=17 Identities=18% Similarity=0.565 Sum_probs=14.1
Q ss_pred chhhhhhhhhhhhhhHH
Q 044744 67 QIKRQKINKFKESAWKC 83 (258)
Q Consensus 67 ~~~~~k~~Kf~Es~w~~ 83 (258)
+.|++|...||++.|-.
T Consensus 27 ~vkk~~l~t~C~seWPt 43 (95)
T d1mn8a_ 27 DVKKRRWVTFCSAEWPT 43 (95)
T ss_dssp CCCHHHHHHHHHTTGGG
T ss_pred eecccchhhhhcccCCc
Confidence 45689999999999964
Done!