BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044745
(753 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 588 bits (1516), Expect = e-168, Method: Compositional matrix adjust.
Identities = 311/634 (49%), Positives = 420/634 (66%), Gaps = 30/634 (4%)
Query: 130 TTRSWDFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGR 189
TTRSWDF+G ++ R+ VES+I+VGV+D+GIWPES SF DEGF P P KWKG C+
Sbjct: 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN 60
Query: 190 NFTCNNKIIGARYY------TTDDISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQG 243
NF CN KIIGAR Y + D++G RD GHGTHTASTA+G V A+ +G+G G
Sbjct: 61 NFRCNRKIIGARSYHIGRPISPGDVNG--PRDTNGHGTHTASTAAGGLVSQANLYGLGLG 118
Query: 244 TARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVI 303
TARGGVP ARIAAYKVC + GC++T IL A+DDAIADGVDII++S+GG N ++ D I
Sbjct: 119 TARGGVPLARIAAYKVCWND-GCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAI 177
Query: 304 AIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLV 363
AIGSFHA+ +G+LT +SAGN GP +T S++PWL+SVAAS DR FV +V +G+GQ+
Sbjct: 178 AIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQ 237
Query: 364 GYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGF 423
G SIN+F ++ +PLV G D+ + CTD ++ L KGKIV+C++ G
Sbjct: 238 GVSINTFDNQ--YYPLVSGRDIPNTGFDKSTSRFCTDKS--VNPNLLKGKIVVCEASFGP 293
Query: 424 NEVHKA--GAEGSVSLNDVEFNKXXXXXXLPAVALNEDNFNSIYSYLKSTKKPEANILST 481
+E K+ GA G + ++ LP+ L+ ++ + Y+ S + P A I +
Sbjct: 294 HEFFKSLDGAAGVLMTSNTR--DYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKS 351
Query: 482 EAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAF---SPLGAVSDDPEDKRQ 538
+ ++ APVV FSSRGPN D++KPDIS PGV+ILAA+ +P+G + +R
Sbjct: 352 TTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGI------RRN 405
Query: 539 AKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGS 598
FN++SGTSMSCPH G+A YVK+++P WSP+AIKSA+MTTA PMN+ N AEFA+GS
Sbjct: 406 TLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGS 465
Query: 599 GHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGNISTCPKGSDKATPKDLNY 658
GH+NP++AV PGLVY+ E DY+ LC GY+ + + +I+G+ S C G + DLNY
Sbjct: 466 GHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSG-NTGRVWDLNY 524
Query: 659 PSMAAQVSPGKSFTINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPESLSFKSLNEKK 718
PS VSP ++F F RT+T+V STY+A I + ++I V P LSF L ++K
Sbjct: 525 PSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMI-SAPQGLTISVNPNVLSFNGLGDRK 583
Query: 719 SFSVTVTGKGLPNGAIVSTSLMWSDGNHRVRSPI 752
SF++TV +G G +VS SL+WSDG H VRSPI
Sbjct: 584 SFTLTV--RGSIKGFVVSASLVWSDGVHYVRSPI 615
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 374 bits (961), Expect = e-104, Method: Compositional matrix adjust.
Identities = 260/659 (39%), Positives = 374/659 (56%), Gaps = 53/659 (8%)
Query: 130 TTRSWDFMGLNQS--ITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKG 187
TT + DF+ LN S + + D+IV V+DSGIWPES SF D+G PK+WKG CK
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 188 GRNFT---CNNKIIGARYYT--------TDDISGNTARDIQGHGTHTASTASGNEVKDAS 236
G F CN K+IGA Y+ T +I+ N+ARD GHGTH AS +GN K S
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 237 FFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTL 296
FG GTARG P AR+A YK E G + ++ A D A+ADGVD+I+IS G + +
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNE-GTFTSDLIAAMDQAVADGVDMISISYGYR-FI 178
Query: 297 NFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVL 356
+D I+I SF AM KGVL SAGN GP IGS + +PW++ VA+ +TDR F + L
Sbjct: 179 PLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTL 238
Query: 357 GSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVI 416
G+G + G+S+ + + P++ +S C S+ +L + + + IVI
Sbjct: 239 GNGLKIRGWSLFPARAFVRDSPVIYNKTLSD-CSSE---ELLSQVEN------PENTIVI 288
Query: 417 CQSFDGFNE----VHKAGAEGSVSLNDVEFNKXXXXXXLPAVALNEDNFNSIYSYLKSTK 472
C F++ + +A + ++ +++ P V +N+ + +Y+K++
Sbjct: 289 CDDNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSV 348
Query: 473 KPEANILSTEAVKDSE-APVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSP-LGAVS 530
P A I E D++ APVVA S+RGP+ I KPDI APGV ILAA+ P + A S
Sbjct: 349 TPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATS 408
Query: 531 DDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKN- 589
+ + SGTSM+ PHAAG+AA +K+ HP+WSPSAI+SA+MTTA P+++++
Sbjct: 409 IGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKP 468
Query: 590 -KDAE-------FAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGNI 641
KD++ G+GH++P A++PGLVY+ QDY+ +LCS+ + E I+ +
Sbjct: 469 IKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSS 528
Query: 642 ST--CPKGSDKATPKDLNYPSMAAQVSPGKSFTI---NFPRTVTNVGLANSTYKAKILQN 696
++ C S DLNYPS A S +FT+ F RTVTNVG +TYKAK L+
Sbjct: 529 ASHNCSNPS-----ADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAK-LKA 582
Query: 697 SKIVSIKVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMW--SDGNHRVRSPIV 753
K +I V P+ L FK+ NEK+S+++T+ G + S+ W +GNH VRSPIV
Sbjct: 583 PKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIV 641
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 8/116 (6%)
Query: 491 VVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMS 550
V+ DFSSRGP + LKP++ APG I+AA + ++ D + GT+M+
Sbjct: 308 VITDFSSRGPT--ADNRLKPEVVAPGNWIIAARASGTSMGQPINDY----YTAAPGTAMA 361
Query: 551 CPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEA 606
PH AG+AA + HP W+P +K+A++ TA + ++ A+ A+G+G +N +A
Sbjct: 362 TPHVAGIAALLLQAHPSWTPDKVKTALIETADIV--KPDEIADIAYGAGRVNAYKA 415
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 196 KIIGARYYTTDDISGNTA-RDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARI 254
K+IG D ++G T D GHGTH AS A+G G +G P A++
Sbjct: 160 KVIG----WVDFVNGKTTPYDDNGHGTHVASIAAGTGA-------ASNGKYKGMAPGAKL 208
Query: 255 AAYKVCSPELGCAETAILGAFDDAIAD----GVDIITISLGGQNTLNFTQDVIAIGSFHA 310
KV + + + + I+ D A+ + G+ +I +SLG + + T D ++ +A
Sbjct: 209 VGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGT-DSLSQAVNNA 267
Query: 311 MAKGVLTLHSAGNSGP 326
G++ + +AGNSGP
Sbjct: 268 WDAGLVVVVAAGNSGP 283
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 28/114 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P G K+ +SGTSM+ P
Sbjct: 178 APFSSVGP--------ELDVMAPGVSICSTL-PGG------------KYGALSGTSMASP 216
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEA 606
H AG AA + S HP+W+ + ++S++ TA + S F +G G IN VEA
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTATKLGDS------FYYGKGLIN-VEA 263
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 18/81 (22%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A GT PSA + A KV + +
Sbjct: 56 NPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQASW 97
Query: 271 ILGAFDDAIADGVDIITISLG 291
I+ + AIA+ +D+I +SLG
Sbjct: 98 IINGIEWAIANNMDVINMSLG 118
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 57/114 (50%), Gaps = 28/114 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K AK SGTSM+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTL---------PGNKYGAK----SGTSMASP 216
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEA 606
H AG AA + S HP+W+ + ++S++ T + S F +G G IN VEA
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN-VEA 263
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 18/82 (21%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A GT PSA + A KV + +
Sbjct: 56 NPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSW 97
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 98 IINGIEWAIANNMDVINMSLGG 119
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 28/114 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I VS P +K AK SGT+M+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSI---------VSTLPGNKYGAK----SGTAMASP 216
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEA 606
H AG AA + S HP+W+ + ++S++ T + S F +G G IN VEA
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN-VEA 263
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 18/82 (21%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A GT PSA + A KV + +
Sbjct: 56 NPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSW 97
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 98 IINGIEWAIANNMDVINMSLGG 119
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 27/110 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K AK SGTSM+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTL---------PGNKYGAK----SGTSMASP 216
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
H AG AA + S HP+W+ + ++S++ T + +S F +G G IN
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGNS------FYYGKGLIN 260
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 18/82 (21%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A GT PSA + A KV + +
Sbjct: 56 NPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSW 97
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 98 IINGIEWAIANNMDVINMSLGG 119
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 123/494 (24%), Positives = 194/494 (39%), Gaps = 105/494 (21%)
Query: 141 QSITRKRSVESDIIVGVIDSGIWPESESF-----------SDEGFGPAPKKWKGACKGGR 189
+++ K S + +V VID+G E++ S E A KK G G
Sbjct: 16 KTLQEKASKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKA-KKEHGITYGEW 74
Query: 190 NFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGN---EVKDASFFGVGQGTAR 246
N+K+ Y+ D G TA D Q HGTH + SGN E K+
Sbjct: 75 ---VNDKVAYYHDYSKD---GKTAVD-QEHGTHVSGILSGNAPSETKEPYRL-------E 120
Query: 247 GGVPSARIAAYKVCSPEL--GCAETA--ILGAFDDAIADGVDIITISLGGQNTLNFTQ-- 300
G +P A++ +V E+ G A+ A A DA+ G +I +S G L +
Sbjct: 121 GAMPEAQLLLMRV---EIVNGLADYARNYAQAIRDAVNLGAKVINMSFGNA-ALAYANLP 176
Query: 301 DVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTV---------------SVAPWLMSVAASN 345
D +A +KGV + SAGN F G T + A ++VA+ +
Sbjct: 177 DETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYS 236
Query: 346 TDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCI 405
D+ + ++ + + K P++ + P ++ +D G
Sbjct: 237 PDKQLTETA-----------TVKTDDHQAKEMPVL-STNRFEPNKA-YDYAYANRGMKED 283
Query: 406 DSRLAKGKIVICQ--SFDGFNEVHKAGAEGSVSLNDVEFNKXXXXXXLPAVALNEDNFNS 463
D + KGKI + + D +++ A G+V + + LP V F S
Sbjct: 284 DFKDVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFIS 343
Query: 464 IYS--YLKSTKKPEANILSTEAVKDSEAPVVAD-----FSSRGPNEIVPD-ILKPDISAP 515
LK K +T V P +D FSS G + D +KPDI+AP
Sbjct: 344 RKDGLLLKDNSKKTITFNATPKV----LPTASDTKLSRFSSWG---LTADGNIKPDIAAP 396
Query: 516 GVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVK----SFHPDWSPS 571
G DIL++ + K+ +SGTSMS P AG+ ++ + +PD +PS
Sbjct: 397 GQDILSSVA-------------NNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPS 443
Query: 572 A----IKSAIMTTA 581
K +M++A
Sbjct: 444 ERLDLAKKVLMSSA 457
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 28/114 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P G K+ +SGT+M+ P
Sbjct: 178 APFSSVGP--------ELDVMAPGVSICSTL-PGG------------KYGALSGTAMASP 216
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEA 606
H AG AA + S HP+W+ + ++S++ TA + S F +G G IN VEA
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTATKLGDS------FYYGKGLIN-VEA 263
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 18/81 (22%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A GT PSA + A KV + +
Sbjct: 56 NPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQASW 97
Query: 271 ILGAFDDAIADGVDIITISLG 291
I+ + AIA+ +D+I +SLG
Sbjct: 98 IINGIEWAIANNMDVINMSLG 118
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 55/110 (50%), Gaps = 27/110 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I VS P +K AK SGT+M+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSI---------VSTLPGNKYGAK----SGTAMASP 216
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
H AG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 260
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 18/82 (21%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A GT PSA + A KV + +
Sbjct: 56 NPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSW 97
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 98 IINGIEWAIANNMDVINMSLGG 119
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K AK SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICSTL---------PGNKYGAK----SGTSMASP 225
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
H AG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A T + + GV G P A + A KV + +
Sbjct: 56 NPFQDNNSHGTHVAGTVAALN----NSIGV-----LGVAPCASLYAVKVLGADGSGQYSW 106
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 107 IINGIEWAIANNMDVINMSLGG 128
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K AK SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICSTL---------PGNKYGAK----SGTSMASP 225
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
H AG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A T + + + GV G PSA + A KV + +
Sbjct: 56 NPFQDNNSHGTHVAGTVAALD----NSIGV-----LGVAPSASLYAVKVLGADGSGQYSW 106
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 107 IINGIEWAIANNMDVINMSLGG 128
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K AK SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNKYGAK----SGTSMASP 225
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
H AG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A T + + GV G P A + A KV + +
Sbjct: 56 NPFQDNNSHGTHVAGTVAALN----NSIGV-----LGVAPCASLYAVKVLGADGSGQYSW 106
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 107 IINGIEWAIANNMDVINMSLGG 128
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 28/114 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K AK SGT M+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTL---------PGNKYGAK----SGTXMASP 216
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEA 606
H AG AA + S HP+W+ + ++S++ T + S F +G G IN VEA
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN-VEA 263
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 18/82 (21%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A GT PSA + A KV + +
Sbjct: 56 NPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSW 97
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 98 IINGIEWAIANNMDVINMSLGG 119
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 28/114 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K AK SGT M+ P
Sbjct: 175 ASFSSVGP--------ELDVMAPGVSIWSTL---------PGNKYGAK----SGTXMASP 213
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEA 606
H AG AA + S HP+W+ + ++S++ T + S F +G G IN VEA
Sbjct: 214 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN-VEA 260
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 18/82 (21%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A GT PSA + A KV + +
Sbjct: 53 NPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSW 94
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 95 IINGIEWAIANNMDVINMSLGG 116
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K AK SGT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNKYGAK----SGTXMASP 225
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
H AG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A T + GV PSA + A KV + +
Sbjct: 56 NPFQDNNSHGTHVAGTVAALN-NSIGVLGV--------APSASLYAVKVLGADGSGQYSW 106
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 107 IINGIEWAIANNMDVINMSLGG 128
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K + SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXSTL---------PGNK----YGAYSGTSMASP 225
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
H AG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A T + + + GV G PSA + A KV + +
Sbjct: 56 NPFQDNNSHGTHVAGTVAALD----NSIGV-----LGVAPSASLYAVKVLGADGSGQYSW 106
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 107 IINGIEWAIANNMDVINMSLGG 128
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K + +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSMASP 225
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
H AG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDS------FYYGKGLIN 269
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A T + GV PSA + A KV + +
Sbjct: 56 NPFQDNNSHGTHVAGTVAALN-NSIGVLGV--------APSASLYAVKVLGADGSGQYSW 106
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 107 IINGIEWAIANNMDVINMSLGG 128
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K + +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSMASP 225
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
H AG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDS------FYYGKGLIN 269
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 214 RDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAI 271
+D HGTH A T A N + GV PS+ + A KV + I
Sbjct: 59 QDDNSHGTHVAGTVAALNNSI---GVLGV--------APSSALYAVKVLGDAGSGQYSWI 107
Query: 272 LGAFDDAIADGVDIITISLGG 292
+ + AIA+ +D+I +SLGG
Sbjct: 108 INGIEWAIANNMDVINMSLGG 128
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 28/114 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K + +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSMASP 225
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEA 606
H AG AA + S HP+W+ + ++S++ T + S F +G G IN VEA
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN-VEA 272
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A T + GV PSA + A KV + +
Sbjct: 56 NPFQDNNSHGTHVAGTVAALN-NSIGVLGV--------APSASLYAVKVLGADGSGQYSW 106
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 107 IINGIEWAIANNMDVINMSLGG 128
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K + SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXSTL---------PGNK----YGAYSGTSMASP 225
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
H AG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTYLGDS------FYYGKGLIN 269
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A T + + GV PSA + A KV + +
Sbjct: 56 NPFQDNNSHGTHVAGTVAALD-NSIGVLGV--------APSASLYAVKVLGADGSGQYSW 106
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 107 IINGIEWAIANNMDVINMSLGG 128
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K + +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSMASP 225
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
H AG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A T + GV PSA + A KV + +
Sbjct: 56 NPFQDNNSHGTHVAGTVAALN-NSIGVLGV--------APSASLYAVKVLGADGSGQYSW 106
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 107 IINGIEWAIANNMDVINMSLGG 128
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K + +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSMASP 225
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
H AG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A T + GV PSA + A KV + +
Sbjct: 56 NPFQDNNSHGTHVAGTVAALN-NSIGVLGV--------APSASLYAVKVLGADGSGQYSW 106
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 107 IINGIEWAIANNMDVINMSLGG 128
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 22/150 (14%)
Query: 469 KSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKP-------DISAPGVDI-- 519
+ + PE N ST+A K + A + +S N +P + P DI+ P V +
Sbjct: 285 QGSSYPEIN--STKACKTAGAKGIIVYS----NSALPGLQNPFLVDANSDITVPSVSVDR 338
Query: 520 ---LAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSA 576
LA + LG S ++ + +GTSM+ PH +GVA V S+HP+ S S +++A
Sbjct: 339 ATGLALKAKLGQ-STTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAA 397
Query: 577 IMTTAWPMNSSKNKDAEFAFGSGHINPVEA 606
+ TA + S +D + + G IN V A
Sbjct: 398 LNATADDL-SVAGRDNQTGY--GMINAVAA 424
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 27/110 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K + SGT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYSGTXMASP 225
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
H AG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A T + GV PSA + A KV + +
Sbjct: 56 NPFQDNNSHGTHVAGTVAALN-NSIGVLGV--------APSASLYAVKVLGADGSGQYSW 106
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 107 IINGIEWAIANNMDVINMSLGG 128
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 27/110 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K + SGT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYSGTXMASP 225
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
H AG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A T + + GV G P A + A KV + +
Sbjct: 56 NPFQDNNSHGTHVAGTVAALN----NSIGV-----LGVAPCASLYAVKVLGADGSGQYSW 106
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 107 IINGIEWAIANNMDVINMSLGG 128
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 27/110 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K + +GT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTXMASP 225
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
H AG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A T + GV PSA + A KV + +
Sbjct: 56 NPFQDNNSHGTHVAGTVAALN-NSIGVLGV--------APSASLYAVKVLGADGSGQYSW 106
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 107 IINGIEWAIANNMDVINMSLGG 128
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 27/110 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K + +GT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTXMASP 225
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
H AG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A T + GV PSA + A KV + +
Sbjct: 56 NPFQDNNSHGTHVAGTVAALN-NSIGVLGV--------APSASLYAVKVLGADGSGQYSW 106
Query: 271 ILGAFDDAIADGVDIITISLGG 292
I+ + AIA+ +D+I +SLGG
Sbjct: 107 IINGIEWAIANNMDVINMSLGG 128
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 430 GAEGSVSLN-DVEFNKXXXXXXLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSE 488
G++G S N ++ L VA +N N+ ++ S N+LS A +
Sbjct: 177 GSDGQCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCN----NVLSVGAT--TS 230
Query: 489 APVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAK--FNVVSG 546
+ A FS+ G + D++APG DIL+ D +R ++ ++G
Sbjct: 231 RGIRASFSNYG--------VDVDLAAPGQDILSTV--------DSGTRRPVSDAYSFMAG 274
Query: 547 TSMSCPHAAGVAAYV----KSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
TSM+ PH +GVAA V S + + +P+ +K +++T P N ++ A GSG ++
Sbjct: 275 TSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDR----ALGSGIVD 330
Query: 603 PVEAVN 608
AVN
Sbjct: 331 AEAAVN 336
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 430 GAEGSVSLN-DVEFNKXXXXXXLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSE 488
G++G S N ++ L VA +N N+ ++ S N+LS A +
Sbjct: 177 GSDGQCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCN----NVLSVGAT--TS 230
Query: 489 APVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAK--FNVVSG 546
+ A FS+ G + D++APG DIL+ D +R ++ ++G
Sbjct: 231 RGIRASFSNYG--------VDVDLAAPGQDILSTV--------DSGTRRPVSDAYSFMAG 274
Query: 547 TSMSCPHAAGVAAYV----KSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
TSM+ PH +GVAA V S + + +P+ +K +++T P N ++ A GSG ++
Sbjct: 275 TSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDR----ALGSGIVD 330
Query: 603 PVEAVN 608
AVN
Sbjct: 331 AEAAVN 336
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 430 GAEGSVSLN-DVEFNKXXXXXXLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSE 488
G++G S N ++ L VA +N N+ ++ S N+LS A +
Sbjct: 177 GSDGQCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCN----NVLSVGAT--TS 230
Query: 489 APVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAK--FNVVSG 546
+ A FS+ G + D++APG DIL+ D +R ++ ++G
Sbjct: 231 RGIRASFSNYG--------VDVDLAAPGQDILSTV--------DSGTRRPVSDAYSFMAG 274
Query: 547 TSMSCPHAAGVAAYV----KSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
TSM+ PH +GVAA V S + + +P+ +K +++T P N ++ A GSG ++
Sbjct: 275 TSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDR----ALGSGIVD 330
Query: 603 PVEAVN 608
AVN
Sbjct: 331 AEAAVN 336
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 27/110 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FSS GP + D+ APGV I + P +K + +GTS + P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSXASP 225
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
H AG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 211 NTARDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAE 268
N +D HGTH A T A N + GV PSA + A KV +
Sbjct: 56 NPFQDNNSHGTHVAGTVAALNNSI---GVLGV--------APSASLYAVKVLGADGSGQY 104
Query: 269 TAILGAFDDAIADGVDIITISLGG 292
+ I+ + AIA+ D+I SLGG
Sbjct: 105 SWIINGIEWAIANNXDVINXSLGG 128
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 74/173 (42%), Gaps = 31/173 (17%)
Query: 430 GAEGSVSLNDVEFNKXXXXXXLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEA 489
G GS +L V + A A NE + S + K P ++ AV +
Sbjct: 128 GPTGSTALKTVVDKAVSSGIVVAAAAGNEGSSGSTSTVGYPAKYPS--TIAVGAVNSANQ 185
Query: 490 PVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSM 549
A FSS G +E+ D+ APGV I + P G + +GTSM
Sbjct: 186 R--ASFSSAG-SEL-------DVMAPGVSIQSTL-PGG------------TYGAYNGTSM 222
Query: 550 SCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
+ PH AG AA + S HP W+ + ++ + +TA + SS F +G G IN
Sbjct: 223 ATPHVAGAAALILSKHPTWTNAQVRDRLESTATYLGSS------FYYGKGLIN 269
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 23/143 (16%)
Query: 211 NTARDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAE 268
N +D HGTH A T A N + GV PSA + A KV
Sbjct: 56 NPYQDGSSHGTHVAGTIAALNNSI---GVLGV--------APSASLYAVKVLDSTGSGQY 104
Query: 269 TAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFI 328
+ I+ + AI++ +D+I +SLGG + V+ A++ G++ +AGN G
Sbjct: 105 SWIINGIEWAISNNMDVINMSLGGPTGSTALKTVVD----KAVSSGIVVAAAAGNEGSS- 159
Query: 329 GSTVSVA-----PWLMSVAASNT 346
GST +V P ++V A N+
Sbjct: 160 GSTSTVGYPAKYPSTIAVGAVNS 182
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Query: 541 FNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGH 600
+ ++GTSM+ PH AG AA + S HP+ S S +++ + +TA + SS F +G G
Sbjct: 214 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGL 267
Query: 601 INPVEA 606
IN VEA
Sbjct: 268 IN-VEA 272
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGA 274
D GHGTH A T + + GV PS + A KV + + + I+
Sbjct: 60 DGNGHGTHVAGTVAALD-NTTGVLGV--------APSVSLYAVKVLNSSGSGSYSGIVSG 110
Query: 275 FDDAIADGVDIITISLGG 292
+ A +G+D+I +SLGG
Sbjct: 111 IEWATTNGMDVINMSLGG 128
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Query: 541 FNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGH 600
+ ++GTSM+ PH AG AA + S HP+ S S +++ + +TA + SS F +G G
Sbjct: 214 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGL 267
Query: 601 INPVEA 606
IN VEA
Sbjct: 268 IN-VEA 272
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGA 274
D GHGTH A T + + GV PS + A KV + + + I+
Sbjct: 60 DGNGHGTHVAGTVAALD-NTTGVLGV--------APSVSLYAVKVLNSSGSGSYSGIVSG 110
Query: 275 FDDAIADGVDIITISLGG 292
+ A +G+D+I +SLGG
Sbjct: 111 IEWATTNGMDVINMSLGG 128
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Query: 541 FNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGH 600
+ ++GTSM+ PH AG AA + S HP+ S S +++ + +TA + SS F +G G
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGL 266
Query: 601 INPVEA 606
IN VEA
Sbjct: 267 IN-VEA 271
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGA 274
D GHGTH A T + + GV PS + A KV + + + I+
Sbjct: 59 DGNGHGTHVAGTVAALD-NTTGVLGV--------APSVSLYAVKVLNSSGSGSYSGIVSG 109
Query: 275 FDDAIADGVDIITISLGG 292
+ A +G+D+I +SLGG
Sbjct: 110 IEWATTNGMDVINMSLGG 127
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Query: 541 FNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGH 600
+ ++GTSM+ PH AG AA + S HP+ S S +++ + +TA + SS F +G G
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGL 266
Query: 601 INPVEA 606
IN VEA
Sbjct: 267 IN-VEA 271
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGA 274
D GHGTH A T + + GV PS + A KV + + + I+
Sbjct: 59 DGNGHGTHVAGTVAALD-NTTGVLGV--------APSVSLYAVKVLNSSGSGSYSGIVSG 109
Query: 275 FDDAIADGVDIITISLGG 292
+ A +G+D+I +SLGG
Sbjct: 110 IEWATTNGMDVINMSLGG 127
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Query: 541 FNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGH 600
+ ++GTSM+ PH AG AA + S HP+ S S +++ + +TA + SS F +G G
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGL 266
Query: 601 INPVEA 606
IN VEA
Sbjct: 267 IN-VEA 271
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGA 274
D GHGTH A T + + GV PS + A KV + + + I+
Sbjct: 59 DGNGHGTHVAGTVAALD-NTTGVLGV--------APSVSLYAVKVLNSSGSGSYSGIVSG 109
Query: 275 FDDAIADGVDIITISLGG 292
+ A +G+D+I +SLGG
Sbjct: 110 IEWATTNGMDVINMSLGG 127
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Query: 541 FNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGH 600
+ ++GTSM+ PH AG AA + S HP+ S S +++ + +TA + SS F +G G
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGL 266
Query: 601 INPVEA 606
IN VEA
Sbjct: 267 IN-VEA 271
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGA 274
D GHGTH A T + + GV PS + A KV + + + I+
Sbjct: 59 DGNGHGTHVAGTVAALD-NTTGVLGV--------APSVSLYAVKVLNSSGSGSYSGIVSG 109
Query: 275 FDDAIADGVDIITISLGG 292
+ A +G+D+I +SLGG
Sbjct: 110 IEWATTNGMDVINMSLGG 127
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
DI APGV++ + + + + ++GTSM+ PH AGVAA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYP-------------GSTYASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 571 SAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
I++ + TA + ++ +GSG +N
Sbjct: 238 VQIRNHLKNTATGLGNTN------LYGSGLVN 263
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 18/178 (10%)
Query: 214 RDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAI 271
+D GHGTH A T A N + GV PSA + A KV + ++I
Sbjct: 57 QDGNGHGTHVAGTIAALNNSI---GVLGV--------APSAELYAVKVLGASGSGSVSSI 105
Query: 272 LGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGST 331
+ A +G+ + +SLG + + + A ++GVL + ++GNSG S
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSGAGSISY 161
Query: 332 VSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSS-KGKTFPLVDGMDVSRP 388
+ M+V A++ + G+G +V +N S+ G T+ ++G ++ P
Sbjct: 162 PARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTSMATP 219
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 73/173 (42%), Gaps = 31/173 (17%)
Query: 430 GAEGSVSLNDVEFNKXXXXXXLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEA 489
G GS +L V + A A NE + S + K P ++ AV S
Sbjct: 128 GPTGSTALKTVVDKAVSSGIVVAAAAGNEGSSGSTSTVGYPAKYPS--TIAVGAVNSSNQ 185
Query: 490 PVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSM 549
A FSS G +E+ D+ APGV I + P G + +GT M
Sbjct: 186 R--ASFSSAG-SEL-------DVMAPGVSIQSTL-PGG------------TYGAYNGTCM 222
Query: 550 SCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
+ PH AG AA + S HP W+ + ++ + +TA + +S F +G G IN
Sbjct: 223 ATPHVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS------FYYGKGLIN 269
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 23/145 (15%)
Query: 211 NTARDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAE 268
N +D HGTH A T A N + GV PSA + A KV
Sbjct: 56 NPYQDGSSHGTHVAGTIAALNNSI---GVLGVS--------PSASLYAVKVLDSTGSGQY 104
Query: 269 TAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFI 328
+ I+ + AI++ +D+I +SLGG + V+ A++ G++ +AGN G
Sbjct: 105 SWIINGIEWAISNNMDVINMSLGGPTGSTALKTVVD----KAVSSGIVVAAAAGNEGSS- 159
Query: 329 GSTVSVA-----PWLMSVAASNTDR 348
GST +V P ++V A N+
Sbjct: 160 GSTSTVGYPAKYPSTIAVGAVNSSN 184
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 19/92 (20%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
DI APGV++ + + + + ++GTSM+ PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYP-------------GSTYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 571 SAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
I++ + TA + S+ +GSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 18/178 (10%)
Query: 214 RDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAI 271
+D GHGTH A T A N + GV PSA + A KV + A ++I
Sbjct: 57 QDGNGHGTHVAGTIAALNNSI---GVLGV--------APSAELYAVKVLGADGRGAISSI 105
Query: 272 LGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGST 331
+ A +G+ + +SLG + + + A ++GVL + ++GNSG S
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSGASSISY 161
Query: 332 VSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSS-KGKTFPLVDGMDVSRP 388
+ M+V A++ + G+G +V +N S+ G T+ ++G ++ P
Sbjct: 162 PARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTSMATP 219
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 19/92 (20%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
DI APGV++ + + + + ++GTSM+ PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYP-------------GSTYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 571 SAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
I++ + TA + S+ +GSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 18/178 (10%)
Query: 214 RDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAI 271
+D GHGTH A T A N + GV PSA + A KV + ++I
Sbjct: 57 QDGNGHGTHVAGTIAALNNSI---GVLGV--------APSAELYAVKVLGASGSGSVSSI 105
Query: 272 LGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGST 331
+ A +G+ + +SLG + + + A ++GVL + ++GNSG S
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSGAGSISY 161
Query: 332 VSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSS-KGKTFPLVDGMDVSRP 388
+ M+V A++ + G+G +V +N S+ G T+ ++G ++ P
Sbjct: 162 PARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTSMATP 219
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 19/92 (20%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
DI APGV++ + + + + ++GTSM+ PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYP-------------GSTYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 571 SAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
I++ + TA + S+ +GSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 214 RDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAI 271
+D GHGTH A T A N + GV P+A + A KV + ++I
Sbjct: 57 QDGNGHGTHVAGTIAALNNSI---GVLGV--------APNAELYAVKVLGASGSGSVSSI 105
Query: 272 LGAFDDAIADGVDIITISLGGQN-TLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS 330
+ A +G+ + +SLG + + Q V + A ++GVL + ++GNSG S
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQAVNS-----ATSRGVLVVAASGNSGAGSIS 160
Query: 331 TVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSS-KGKTFPLVDGMDVSRP 388
+ M+V A++ + G+G +V +N S+ G T+ ++G ++ P
Sbjct: 161 YPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTSMATP 219
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 19/92 (20%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
DI APGV++ + + + + ++GTSM+ PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYP-------------GSTYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 571 SAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
I++ + TA + S+ +GSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 20/179 (11%)
Query: 214 RDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAI 271
+D GHGTH A T A N + GV P+A + A KV G + ++I
Sbjct: 57 QDGNGHGTHVAGTIAALNNSI---GVLGV--------APNAELYAVKVLGASGGGSNSSI 105
Query: 272 LGAFDDAIADGVDIITISLGGQN-TLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS 330
+ A +G+ + +SLG + + Q V + A ++GVL + ++GNSG S
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQAVNS-----ATSRGVLVVAASGNSGAGSIS 160
Query: 331 TVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSS-KGKTFPLVDGMDVSRP 388
+ M+V A++ + G+G +V +N S+ G T+ ++G ++ P
Sbjct: 161 YPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTSMATP 219
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 19/92 (20%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
DI APGV++ + + + + ++GTSM+ PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYP-------------GSTYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 571 SAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
I++ + TA + S+ +GSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 73/173 (42%), Gaps = 31/173 (17%)
Query: 430 GAEGSVSLNDVEFNKXXXXXXLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEA 489
G GS +L V + A A NE + S + K P ++ AV S
Sbjct: 128 GPTGSTALKTVVDKAVSSGIVVAAAAGNEGSSGSTSTVGYPAKYPS--TIAVGAVNSSNQ 185
Query: 490 PVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSM 549
A FSS G +E+ D+ APGV I + P G + +GT M
Sbjct: 186 R--ASFSSVG-SEL-------DVMAPGVSIQSTL-PGG------------TYGAYNGTXM 222
Query: 550 SCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
+ PH AG AA + S HP W+ + ++ + +TA + +S F +G G IN
Sbjct: 223 ATPHVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS------FYYGKGLIN 269
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 26/187 (13%)
Query: 211 NTARDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAE 268
N +D HGTH A T A N + GV PSA + A KV
Sbjct: 56 NPYQDGSSHGTHVAGTIAALNNSI---GVLGV--------APSASLYAVKVLDSTGSGQY 104
Query: 269 TAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFI 328
+ I+ + AI++ +D+I +SLGG + V+ A++ G++ +AGN G
Sbjct: 105 SWIINGIEWAISNNMDVINMSLGGPTGSTALKTVVD----KAVSSGIVVAAAAGNEGSS- 159
Query: 329 GSTVSVA-----PWLMSVAASNTDRLFVDKVVLGSGQTLV--GYSINSFSSKGKTFPLVD 381
GST +V P ++V A N+ +GS ++ G SI S + G T+ +
Sbjct: 160 GSTSTVGYPAKYPSTIAVGAVNSSNQRASFSSVGSELDVMAPGVSIQS-TLPGGTYGAYN 218
Query: 382 GMDVSRP 388
G ++ P
Sbjct: 219 GTXMATP 225
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
VA FSSRGP + +KPD+ APG IL+A S L A +K+ + GTSM+
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSL-APDSSFWANHDSKYAYMGGTSMAT 258
Query: 552 PHAAGVAA-----YVKSFHPDWSPSAIKSAIMTTA 581
P AG A +VK+ PS +K+A++ A
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 17/94 (18%)
Query: 492 VADFSSRGPNEIVPD--ILKPD--ISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGT 547
VADFSSRG D I K D ISAPG + + + G + +SGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFDGG-------------YATISGT 248
Query: 548 SMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTA 581
SM+ PHAAG+AA + + P S ++ + T A
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRA 282
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 15/124 (12%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPE-LGCAE- 268
N+ D QGHGTH A +A N + +GV P A + AYKV + G A+
Sbjct: 63 NSCTDRQGHGTHVAGSALANGGTGSGVYGV--------APEADLWAYKVLGDDGSGYADD 114
Query: 269 --TAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGP 326
AI A D A A ++ I++ ++ + A+ +A KGVL + +AGNSGP
Sbjct: 115 IAEAIRHAGDQATALNTKVV-INMSLGSSGESSLITNAVD--YAYDKGVLIIAAAGNSGP 171
Query: 327 FIGS 330
GS
Sbjct: 172 KPGS 175
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 478 ILSTEAVKDSEAPVVADFSSRGPNEIVPDIL----KPDISAPGVDILAAFSPLGAVSDDP 533
+ + E V+ + VAD+SSRG D + +ISAPG + + + G
Sbjct: 189 VAALENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGG------ 242
Query: 534 EDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTA 581
+N +SGTSM+ PH +G+AA + + +P S + ++S + A
Sbjct: 243 -------YNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA 283
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
Query: 211 NTARDIQGHGTHTASTASGNEVKD-ASFFGVGQGTARGGVPSARIAAYKVC----SPELG 265
N+ D GHGTH A TA + D A +GV P A + AYKV S
Sbjct: 63 NSCTDRNGHGTHVAGTALADGGSDQAGIYGV--------APDADLWAYKVLLDSGSGYSD 114
Query: 266 CAETAILGAFDDAIADGVD-IITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNS 324
AI A D A A G II++SLG + +I+ +A +KGVL + +AGNS
Sbjct: 115 DIAAAIRHAADQATATGTKTIISMSLGS----SANNSLISSAVNYAYSKGVLIVAAAGNS 170
Query: 325 G 325
G
Sbjct: 171 G 171
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 541 FNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGH 600
+ ++GT M+ PH AG AA + S HP+ S S +++ + +TA + SS F +G G
Sbjct: 213 YATLNGTXMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGL 266
Query: 601 INPVEA 606
IN VEA
Sbjct: 267 IN-VEA 271
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGA 274
D GHGTH A T + + GV PS + A KV + + + I+
Sbjct: 59 DGNGHGTHVAGTVAALD-NTTGVLGV--------APSVSLYAVKVLNSSGSGSYSGIVSG 109
Query: 275 FDDAIADGVDIITISLGG 292
+ A +G+D+I +SLGG
Sbjct: 110 IEWATTNGMDVINMSLGG 127
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 119/456 (26%), Positives = 176/456 (38%), Gaps = 79/456 (17%)
Query: 154 IVGVIDSGIWPESESF-----------SDEGFGPAPKKWKGACKGGRNFTCNNKIIGARY 202
+V VID+G E++ S E A KK G G N+K+
Sbjct: 20 VVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKA-KKEHGITYGEW---VNDKVAYYHD 75
Query: 203 YTTDDISGNTARDIQGHGTHTASTASGN---EVKDASFFGVGQGTARGGVPSARIAAYKV 259
Y+ D G TA D Q HGTH + SGN E K+ G P A++ +V
Sbjct: 76 YSKD---GKTAVD-QEHGTHVSGILSGNAPSETKEPYRL-------EGAXPEAQLLLXRV 124
Query: 260 CSPEL--GCAETA--ILGAFDDAIADGVDIITISLGGQNTLNFTQ--DVIAIGSFHAMAK 313
E+ G A+ A A DAI G +I S G L + D +A +K
Sbjct: 125 ---EIVNGLADYARNYAQAIRDAINLGAKVINXSFGNA-ALAYANLPDETKKAFDYAKSK 180
Query: 314 GVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSK 373
GV + SAGN F G T + +A + S T+ YS + ++
Sbjct: 181 GVSIVTSAGNDSSFGGKT------RLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTE 234
Query: 374 GKTFPLVDGMDVSRPCESD--FDPQLCTD------GQGCIDSRLAKGKIVICQ--SFDGF 423
D D P S F+P D G D + KGKI + + D
Sbjct: 235 TVRVKTADQQDKEXPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFK 294
Query: 424 NEVHKAGAEGSVSLNDVEFNKXXXXXXLPAVALNEDNFNSIYSYLKSTKKPEANIL---S 480
+++ KA G+V + + LP V F S L P+ I +
Sbjct: 295 DKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQXPAAFISRKDGLLLKDNPQKTITFNAT 354
Query: 481 TEAVKDSEAPVVADFSSRGPNEIVPD-ILKPDISAPGVDILAAFSPLGAVSDDPEDKRQA 539
+ + + ++ FSS G + D +KPDI+APG DIL++ +
Sbjct: 355 PKVLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVA-------------NN 398
Query: 540 KFNVVSGTSMSCPHAAGVAAYVK----SFHPDWSPS 571
K+ +SGTS S P AG+ ++ + +PD +PS
Sbjct: 399 KYAKLSGTSXSAPLVAGIXGLLQKQYETQYPDXTPS 434
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 19/92 (20%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
DI APGV++ + + + + ++GT M+ PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYP-------------GSTYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 571 SAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
I++ + TA + S+ +GSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 214 RDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAI 271
+D GHGTH A T A N + GV P+A + A KV + ++I
Sbjct: 57 QDGNGHGTHVAGTIAALNNSI---GVLGV--------APNAELYAVKVLGASGSGSVSSI 105
Query: 272 LGAFDDAIADGVDIITISLGGQN-TLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS 330
+ A +G+ + +SLG + + Q V + A ++GVL + ++GNSG S
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQAVNS-----ATSRGVLVVAASGNSGAGSIS 160
Query: 331 TVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSS-KGKTFPLVDGMDVSRP 388
+ M+V A++ + G+G +V +N S+ G T+ ++G ++ P
Sbjct: 161 YPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTXMATP 219
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 19/92 (20%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
DI APGV++ + + + + ++GT M+ PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYP-------------GSTYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 571 SAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
I++ + TA + S+ +GSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 19/92 (20%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
DI APGV++ + + + + ++GT M+ PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYP-------------GSTYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 571 SAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
I++ + TA + S+ +GSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 18/178 (10%)
Query: 214 RDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILG 273
+D GHGTH A T + + GV PSA + A KV A ++I
Sbjct: 57 QDGNGHGTHVAGTIAALD-NSIGVLGV--------APSAELYAVKVLGASGSGAISSIAQ 107
Query: 274 AFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVS 333
+ A +G+ + +SLG + + + A ++GVL + ++GN G GS
Sbjct: 108 GLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNEG--AGSIDY 161
Query: 334 VAPW--LMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSS-KGKTFPLVDGMDVSRP 388
A + M+V A++ + G+G +V +N S+ G T+ ++G ++ P
Sbjct: 162 PARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTXMATP 219
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 19/92 (20%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
DI APGV++ + + + + ++GT M+ PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYP-------------GSTYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 571 SAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602
I++ + TA + S+ +GSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 14/176 (7%)
Query: 214 RDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILG 273
+D GHGTH A T + + GV PSA + A KV A ++I
Sbjct: 57 QDGNGHGTHVAGTIAALD-NSIGVLGV--------APSAELYAVKVLGASGSGAISSIAQ 107
Query: 274 AFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVS 333
+ A +G+ + +SLG + + + A ++GVL + ++GNSG S +
Sbjct: 108 GLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSGAGSISYPA 163
Query: 334 VAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSS-KGKTFPLVDGMDVSRP 388
M+V A++ + G+G +V +N S+ G T+ ++G ++ P
Sbjct: 164 RYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTXMATP 219
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
Query: 211 NTARDIQGHGTHTASTASGNEVKD-ASFFGVGQGTARGGVPSARIAAYKVC----SPELG 265
N+ D GHGTH A TA + D A +GV P A + AYKV S
Sbjct: 63 NSCTDRNGHGTHVAGTALADGGSDQAGIYGV--------APDADLWAYKVLLDSGSGYSD 114
Query: 266 CAETAILGAFDDAIADGVD-IITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNS 324
AI A D A A G II++SLG + +I+ +A +KGVL + +AGNS
Sbjct: 115 DIAAAIRHAADQATATGTKTIISMSLGS----SANNSLISSAVNYAYSKGVLIVAAAGNS 170
Query: 325 G 325
G
Sbjct: 171 G 171
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
Query: 478 ILSTEAVKDSEAPVVADFSSRGPNEIVPDIL----KPDISAPGVDILAAFSPLGAVSDDP 533
+ + E V+ + VAD+SSRG D + +ISAPG + + + G
Sbjct: 189 VAALENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGG------ 242
Query: 534 EDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTA 581
+N +SGT M+ PH +G+AA + + +P S + ++S + A
Sbjct: 243 -------YNTISGTXMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA 283
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 20/96 (20%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
++ APGV + + + P + + ++GTSM+ PH AG AA + S +P S
Sbjct: 196 EVMAPGVSVYSTY---------PSNT----YTSLNGTSMASPHVAGAAALILSKYPTLSA 242
Query: 571 SAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEA 606
S +++ + +TA + S F +G G IN VEA
Sbjct: 243 SQVRNRLSSTATNLGDS------FYYGKGLIN-VEA 271
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 16/130 (12%)
Query: 196 KIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIA 255
K++G + + + S NT D GHGTH A T + + GV P+ +
Sbjct: 43 KVVGGASFVSGE-SYNT--DGNGHGTHVAGTVAALD-NTTGVLGV--------APNVSLY 90
Query: 256 AYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGV 315
A KV + + +AI+ + A +G+D+I +SLGG + + + A A G+
Sbjct: 91 AIKVLNSSGSGSYSAIVSGIEWATQNGLDVINMSLGGPSGSTALKQAVD----KAYASGI 146
Query: 316 LTLHSAGNSG 325
+ + +AGNSG
Sbjct: 147 VVVAAAGNSG 156
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 30/149 (20%)
Query: 478 ILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKR 537
+L+ A+ D PV DFS+ G K I APG DIL A G +
Sbjct: 174 VLAVGAMDDQGKPV--DFSNWGDA-----YQKQGILAPGKDILGAKPNGGTIR------- 219
Query: 538 QAKFNVVSGTSMSCPHAAGVAAYVKSFH------PDWSPSAIKSAIMTTAWPMNSSKNKD 591
+SGTS + P +GVAA + S PD P +K+A++ +A P N K+ D
Sbjct: 220 ------LSGTSFATPIVSGVAALLLSLQIKRGEKPD--PQKVKNALLASATPCN-PKDTD 270
Query: 592 AEFAFGSGHINPVEAVNPGLVYETFEQDY 620
+ G +N ++A+ L ET +D
Sbjct: 271 DQSRCLMGKLNILDAIE-HLTGETMSEDL 298
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
VA FSSRGP + +KPD+ APG IL+A S L A +K+ GTS +
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSL-APDSSFWANHDSKYAYXGGTSXAT 258
Query: 552 PHAAGVAA-----YVKSFHPDWSPSAIKSAIMTTA 581
P AG A +VK+ PS +K+A++ A
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 23/74 (31%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
+A FS+R +P++SAPGVDIL+ + P+D + + GT+M+
Sbjct: 213 IASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTAMAT 249
Query: 552 PHAAGVAAYVKSFH 565
PH +GV A +++ +
Sbjct: 250 PHVSGVVALIQAAY 263
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 25/149 (16%)
Query: 215 DIQGHGTHTASTASGNEVKDASFFGVGQGT---------ARGGVPSARIA---AYKVCSP 262
D GHGTH T + D GV G ARG + IA + P
Sbjct: 71 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 129
Query: 263 ELGCAET----AILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTL 318
+ G A+ I G DD D ++I++SLGG ++ D+I A G++ +
Sbjct: 130 D-GVADKDGDGIIAGDPDD---DAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIV 181
Query: 319 HSAGNSGPFIGSTVSVAPWLMSVAASNTD 347
++GN G S + P +++V A +++
Sbjct: 182 AASGNEGAPSPSYPAAYPEVIAVGAIDSN 210
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 23/74 (31%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
+A FS+R +P++SAPGVDIL+ + P+D + + GT+M+
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTAMAT 258
Query: 552 PHAAGVAAYVKSFH 565
PH +GV A +++ +
Sbjct: 259 PHVSGVVALIQAAY 272
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 23/74 (31%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
+A FS+R +P++SAPGVDIL+ + P+D + + GT+M+
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTAMAT 258
Query: 552 PHAAGVAAYVKSFH 565
PH +GV A +++ +
Sbjct: 259 PHVSGVVALIQAAY 272
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 25/149 (16%)
Query: 215 DIQGHGTHTASTASGNEVKDASFFGVGQGT---------ARGGVPSARIA---AYKVCSP 262
D GHGTH T + D GV G ARG + IA A + P
Sbjct: 80 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIAQAILGP 138
Query: 263 ELGCAET----AILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTL 318
+ G A+ I G DD D ++I++SLGG ++ D+I A G++ +
Sbjct: 139 D-GVADKDGDGIIAGDPDD---DAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIV 190
Query: 319 HSAGNSGPFIGSTVSVAPWLMSVAASNTD 347
++GN G S + P +++V A +++
Sbjct: 191 AASGNEGAPSPSYPAAYPEVIAVGAIDSN 219
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 23/74 (31%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
+A FS+R +P++SAPGVDIL+ + P+D + + GT+M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTAMAT 247
Query: 552 PHAAGVAAYVKSFH 565
PH +GV A +++ +
Sbjct: 248 PHVSGVVALIQAAY 261
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 25/149 (16%)
Query: 215 DIQGHGTHTASTASGNEVKDASFFGVGQGT---------ARGGVPSARIA---AYKVCSP 262
D GHGTH T + D GV G ARG + IA + P
Sbjct: 69 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 127
Query: 263 ELGCAET----AILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTL 318
+ G A+ I G DD D ++I++SLGG ++ D+I A G++ +
Sbjct: 128 D-GVADKDGDGIIAGDPDD---DAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIV 179
Query: 319 HSAGNSGPFIGSTVSVAPWLMSVAASNTD 347
++GN G S + P +++V A +++
Sbjct: 180 AASGNEGAPSPSYPAAYPEVIAVGAIDSN 208
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 23/74 (31%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
+A FS+R +P++SAPGVDIL+ + P+D + + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTAMAT 327
Query: 552 PHAAGVAAYVKSFH 565
PH +GV A +++ +
Sbjct: 328 PHVSGVVALIQAAY 341
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 25/149 (16%)
Query: 215 DIQGHGTHTASTASGNEVKDASFFGVGQGT---------ARGGVPSARIA---AYKVCSP 262
D GHGTH T + D GV G ARG + IA + P
Sbjct: 149 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 207
Query: 263 ELGCAET----AILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTL 318
+ G A+ I G DD D ++I++SLGG ++ D+I A G++ +
Sbjct: 208 D-GVADKDGDGIIAGDPDD---DAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIV 259
Query: 319 HSAGNSGPFIGSTVSVAPWLMSVAASNTD 347
++GN G S + P +++V A +++
Sbjct: 260 AASGNEGAPSPSYPAAYPEVIAVGAIDSN 288
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 23/74 (31%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
+A FS+R +P++SAPGVDIL+ + P+D + + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTAMAT 327
Query: 552 PHAAGVAAYVKSFH 565
PH +GV A +++ +
Sbjct: 328 PHVSGVVALIQAAY 341
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 19/146 (13%)
Query: 215 DIQGHGTHTASTASGNEVKDASFFGVGQGT---------ARGGVPSARIA---AYKVCSP 262
D GHGTH T + D GV G ARG + IA + P
Sbjct: 149 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 207
Query: 263 ELGCAETAILGAF-DDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSA 321
+ G A+ G D AD ++I++SLGG ++ D+I A G++ + ++
Sbjct: 208 D-GVADKDGDGIIAGDPDADAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIVAAS 262
Query: 322 GNSGPFIGSTVSVAPWLMSVAASNTD 347
GN G S + P +++V A +++
Sbjct: 263 GNEGAPSPSYPAAYPEVIAVGAIDSN 288
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 23/74 (31%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
+A FS+R +P++SAPGVDIL+ + P+D + + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTAMAT 327
Query: 552 PHAAGVAAYVKSFH 565
PH +GV A +++ +
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 23/74 (31%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
+A FS+R +P++SAPGVDIL+ + P+D + + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTAMAT 327
Query: 552 PHAAGVAAYVKSFH 565
PH +GV A +++ +
Sbjct: 328 PHVSGVVALIQAAY 341
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 25/149 (16%)
Query: 215 DIQGHGTHTASTASGNEVKDASFFGVGQGT---------ARGGVPSARIA---AYKVCSP 262
D GHGTH T + D GV G ARG + IA + P
Sbjct: 149 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 207
Query: 263 ELGCAET----AILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTL 318
+ G A+ I G DD D ++I++SLGG ++ D+I A G++ +
Sbjct: 208 D-GVADKDGDGIIAGDPDD---DAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIV 259
Query: 319 HSAGNSGPFIGSTVSVAPWLMSVAASNTD 347
++GN G S + P +++V A +++
Sbjct: 260 AASGNEGAPSPSYPAAYPEVIAVGAIDSN 288
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 23/74 (31%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
+A FS+R +P++SAPGVDIL+ + P+D + + GT+M+
Sbjct: 288 IASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTAMAT 324
Query: 552 PHAAGVAAYVKSFH 565
PH +GV A +++ +
Sbjct: 325 PHVSGVVALIQAAY 338
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 25/149 (16%)
Query: 215 DIQGHGTHTASTASGNEVKDASFFGVGQGT---------ARGGVPSARIA---AYKVCSP 262
D GHGTH T + D GV G ARG + IA + P
Sbjct: 146 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 204
Query: 263 ELGCAET----AILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTL 318
+ G A+ I G DD D ++I++SLGG ++ D+I A G++ +
Sbjct: 205 D-GVADKDGDGIIAGDPDD---DAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIV 256
Query: 319 HSAGNSGPFIGSTVSVAPWLMSVAASNTD 347
++GN G S + P +++V A +++
Sbjct: 257 AASGNEGAPSPSYPAAYPEVIAVGAIDSN 285
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 23/74 (31%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
+A FS+R +P++SAPGVDIL+ + P+D + + GT M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTXMAT 247
Query: 552 PHAAGVAAYVKSFH 565
PH +GV A +++ +
Sbjct: 248 PHVSGVVALIQAAY 261
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 25/149 (16%)
Query: 215 DIQGHGTHTASTASGNEVKDASFFGVGQGT---------ARGGVPSARIA---AYKVCSP 262
D GHGTH T + D GV G ARG + IA + P
Sbjct: 69 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 127
Query: 263 ELGCAET----AILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTL 318
+ G A+ I G DD D ++I++SLGG ++ D+I A G++ +
Sbjct: 128 D-GVADKDGDGIIAGDPDD---DAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIV 179
Query: 319 HSAGNSGPFIGSTVSVAPWLMSVAASNTD 347
++GN G S + P +++V A +++
Sbjct: 180 AASGNEGAPSPSYPAAYPEVIAVGAIDSN 208
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
DI APG I +++ + N +SGTSM+ PH AGVAA +P+ SP
Sbjct: 198 DIYAPGSSITSSWY-----------TSNSATNTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 571 SAIKSAIMTTA 581
+ + + + T A
Sbjct: 247 AQVTNLLKTRA 257
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 23/74 (31%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
+A FS+R +P++SAPGVDIL+ + P+D + + GT M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTCMAT 247
Query: 552 PHAAGVAAYVKSFH 565
PH +GV A +++ +
Sbjct: 248 PHVSGVVALIQAAY 261
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 25/149 (16%)
Query: 215 DIQGHGTHTASTASGNEVKDASFFGVGQGT---------ARGGVPSARIA---AYKVCSP 262
D GHGTH T + D GV G ARG + IA + P
Sbjct: 69 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 127
Query: 263 ELGCAET----AILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTL 318
+ G A+ I G DD D ++I++SLGG ++ D+I A G++ +
Sbjct: 128 D-GVADKDGDGIIAGDPDD---DAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIV 179
Query: 319 HSAGNSGPFIGSTVSVAPWLMSVAASNTD 347
++GN G S + P +++V A +++
Sbjct: 180 AASGNEGAPSPSYPAAYPEVIAVGAIDSN 208
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
D+ APG I +A+ D N GTSM+ PH AGVAA +P +P
Sbjct: 196 DLFAPGASIPSAWYT--------SDTATQTLN---GTSMATPHVAGVAALYLEQNPSATP 244
Query: 571 SAIKSAIMTTA 581
+++ SAI+ A
Sbjct: 245 ASVASAILNGA 255
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKR-----QAKFNVVSG 546
VA FSSR + APGV IL+ ++ + ++ ++ G
Sbjct: 328 VAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQG 379
Query: 547 TSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSS 587
TSM+ PH GV A + P+ P I+ + TA+ N +
Sbjct: 380 TSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN 420
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 64/169 (37%), Gaps = 33/169 (19%)
Query: 177 APKKWKGACKGGRNFT------CN-------NKIIGARYYTTDDISGNTA-RDIQGHGTH 222
AP W+ + KG C +IIG TTD T D GHGTH
Sbjct: 30 APAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTH 89
Query: 223 TASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVC----SPELGCAETAILGAFD-- 276
A T + E G G G P A + K S E+G AI A D
Sbjct: 90 VAGTVAAAE--------TGSGVV-GVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWR 140
Query: 277 DAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSG 325
+ + IIT+SLGG D + +A++ V + +AGN G
Sbjct: 141 GPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVVXAAGNEG 185
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 18/79 (22%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYV-----KSFH 565
DI APGV I + + G + +SGT+M+ PH AG A + +F
Sbjct: 226 DIVAPGVGIKSTYLDSG-------------YAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 566 PDWSPSAIKSAIMTTAWPM 584
S + I + ++ A P+
Sbjct: 273 RSLSETEIYAQLVRRATPI 291
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
DI PG DIL+ + +G + +SGTSM+ PH AG+AAY+ + +
Sbjct: 200 DIFGPGTDILSTW--IGGSTRS-----------ISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 571 SAIK 574
SA +
Sbjct: 247 SACR 250
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 63/169 (37%), Gaps = 33/169 (19%)
Query: 177 APKKWKGACKGGRNFT-------------CNNKIIGARYYTTDDISGNTA-RDIQGHGTH 222
AP W+ + KG +IIG TTD T D GHGTH
Sbjct: 30 APAVWRASAKGAGQIIGVIDTGXQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTH 89
Query: 223 TASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVC----SPELGCAETAILGAFD-- 276
A T + E G G G P A + K S E+G AI A D
Sbjct: 90 VAGTVAAAE--------TGSGVV-GVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWR 140
Query: 277 DAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSG 325
+ + IIT+SLGG D + +A++ V + +AGN G
Sbjct: 141 GPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVVXAAGNEG 185
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 18/79 (22%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYV-----KSFH 565
DI APGV I + + G + +SGT+M+ PH AG A + +F
Sbjct: 226 DIVAPGVGIKSTYLDSG-------------YAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 566 PDWSPSAIKSAIMTTAWPM 584
S + I + ++ A P+
Sbjct: 273 RSLSETEIYAQLVRRATPI 291
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 13/53 (24%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKS 563
D+ APGVDI++ + ++ +SGTSM+ PH AG+AA + S
Sbjct: 202 DVVAPGVDIVSTITG-------------NRYAYMSGTSMASPHVAGLAALLAS 241
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 21/201 (10%)
Query: 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGA 274
D+ HGTH A A+ E +A+ G A G P+ RI A + + I A
Sbjct: 68 DLNNHGTHVAGIAAA-ETNNAT------GIA-GMAPNTRILAVRALDRNGSGTLSDIADA 119
Query: 275 FDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSV 334
A G ++I +SLG ++ + +A KG + + +AGN+G +T
Sbjct: 120 IIYAADSGAEVINLSLGCDCHTTTLENAVN----YAWNKGSVVVAAAGNNGS--STTFEP 173
Query: 335 APWLMSVAASNTDRLFVDKVV----LGSGQTLVGYSINSFSS-KGKTFPLVDGMDVSRPC 389
A + +A D+ D++ G+ +V ++ S+ G + + G ++ P
Sbjct: 174 ASYENVIAVGAVDQY--DRLASFSNYGTWVDVVAPGVDIVSTITGNRYAYMSGTSMASPH 231
Query: 390 ESDFDPQLCTDGQGCIDSRLA 410
+ L + G+ I+ R A
Sbjct: 232 VAGLAALLASQGRNNIEIRQA 252
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 64/169 (37%), Gaps = 33/169 (19%)
Query: 177 APKKWKGACKGGRNFT------CN-------NKIIGARYYTTDDISGNTA-RDIQGHGTH 222
AP W+ + KG C +IIG TTD T D GHGTH
Sbjct: 30 APAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTH 89
Query: 223 TASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVC----SPELGCAETAILGAFD-- 276
A T + E G G G P A + K S E+G AI A D
Sbjct: 90 VAGTVAAAE--------TGSGVV-GVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWR 140
Query: 277 DAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSG 325
+ + IIT+SLGG D + +A++ V + +AGN G
Sbjct: 141 GPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVVCAAGNEG 185
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 18/79 (22%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYV-----KSFH 565
DI APGV I + + G + +SGT+M+ PH AG A + +F
Sbjct: 226 DIVAPGVGIKSTYLDSG-------------YAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 566 PDWSPSAIKSAIMTTAWPM 584
S + I + ++ A P+
Sbjct: 273 RSLSETEIYAQLVRRATPI 291
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 219 HGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAE--TAILGA-- 274
HGTH +S ASGN G P+A+I + + LG E TA++ A
Sbjct: 272 HGTHVSSIASGNH---------SSRDVDGVAPNAKIVSXTIGDGRLGSXETGTALVRAXT 322
Query: 275 -FDDAIADG--VDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGST 331
+ DG +D+I S G + + + + + GV+ + SAGN GP + T
Sbjct: 323 KVXELCRDGRRIDVINXSYGEHANWSNSGRIGELXNEVVNKYGVVWVASAGNHGPAL-CT 381
Query: 332 VSVAP 336
V P
Sbjct: 382 VGTPP 386
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 524 SPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAY----VKSFHPDWSPSAIKSAIMT 579
+P GA++ P+ +K + +GTS + PH AG A +K + ++SP +IK AI
Sbjct: 439 APGGAIASVPQFT-XSKSQLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISV 497
Query: 580 TAWPMNSSKNKDAEFAFGSGHIN 602
TA + FA G G +N
Sbjct: 498 TATKLGYVD----PFAQGHGLLN 516
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 18/112 (16%)
Query: 512 ISAPGVDILAAF--SPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYV----KSFH 565
++APG +IL+ G V ++ + + +GTSM+ PH +GVAA V S
Sbjct: 247 LAAPGTNILSTIDVGQAGPV--------RSSYGMKAGTSMAAPHVSGVAALVISAANSIG 298
Query: 566 PDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVNPGLVYETFE 617
+PS + ++ T S N + GSG ++ AVN L + E
Sbjct: 299 KTLTPSELSDILVRTT----SRFNGRLDRGLGSGIVDANAAVNAVLGDQNLE 346
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 64/169 (37%), Gaps = 33/169 (19%)
Query: 177 APKKWKGACKGGRNFT------CN-------NKIIGARYYTTDDISGNTA-RDIQGHGTH 222
AP W+ + KG C +IIG TTD T D GHGTH
Sbjct: 12 APAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTH 71
Query: 223 TASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVC----SPELGCAETAILGAFD-- 276
A T + E G G G P A + K S E+G AI A D
Sbjct: 72 VAGTVAAAE--------TGSGVV-GVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWR 122
Query: 277 DAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSG 325
+ + IIT+SLGG D + +A++ V + +AGN G
Sbjct: 123 GPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVVCAAGNEG 167
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 18/79 (22%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYV-----KSFH 565
DI APGV I + + G + +SGT+M+ PH AG A + +F
Sbjct: 208 DIVAPGVGIKSTYLDSG-------------YAELSGTAMAAPHVAGALALIINLAEDAFK 254
Query: 566 PDWSPSAIKSAIMTTAWPM 584
S + I + ++ A P+
Sbjct: 255 RSLSETEIYAQLVRRATPI 273
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 18/112 (16%)
Query: 512 ISAPGVDILAAF--SPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYV----KSFH 565
++APG +IL+ G V ++ + + +GTSM+ PH +GVAA V S
Sbjct: 247 LAAPGTNILSTIDVGQAGPV--------RSSYGMKAGTSMAAPHVSGVAALVISAANSIG 298
Query: 566 PDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVNPGLVYETFE 617
+PS + ++ T S N + GSG ++ AVN L + E
Sbjct: 299 KTLTPSELSDILVRTT----SRFNGRLDRGLGSGIVDANAAVNAVLGDQNLE 346
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYV 561
DI APG I + + +G + N +SGTSM+ PH AG+AAY+
Sbjct: 201 DIFAPGTSITSTW--IGG-----------RTNTISGTSMATPHIAGLAAYL 238
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 51/145 (35%), Gaps = 27/145 (18%)
Query: 164 PESESFSDEGFGP----APKKWKGACKGGRNFT------------CNNKIIGARYYTTDD 207
P FS +GP AP+ W A G K++G + +D
Sbjct: 3 PNDPYFSSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDND 62
Query: 208 ISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCA 267
+T ++ GHGTH A A+ G P A I A +V
Sbjct: 63 ---STPQNGNGHGTHCAGIAAAVTNNSTGIAGT--------APKASILAVRVLDNSGSGT 111
Query: 268 ETAILGAFDDAIADGVDIITISLGG 292
TA+ A G +I++SLGG
Sbjct: 112 WTAVANGITYAADQGAKVISLSLGG 136
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 15/71 (21%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
D++APG I + + + + +SGTSM+ PH AGVA + S S
Sbjct: 201 DVAAPGSWIYSTYP-------------TSTYASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 571 SAIKSAIMTTA 581
S I++AI TA
Sbjct: 246 SNIRAAIENTA 256
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 51/145 (35%), Gaps = 27/145 (18%)
Query: 164 PESESFSDEGFGP----APKKWKGACKGGRNFT------------CNNKIIGARYYTTDD 207
P FS +GP AP+ W A G K++G + +D
Sbjct: 3 PNDPYFSSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDND 62
Query: 208 ISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCA 267
+T ++ GHGTH A A+ G P A I A +V
Sbjct: 63 ---STPQNGNGHGTHCAGIAAAVTNNSTGIAGT--------APKASILAVRVLDNSGSGT 111
Query: 268 ETAILGAFDDAIADGVDIITISLGG 292
TA+ A G +I++SLGG
Sbjct: 112 WTAVANGITYAADQGAKVISLSLGG 136
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 15/71 (21%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
D++APG I + + + + +SGTSM+ PH AGVA + S S
Sbjct: 201 DVAAPGSSIYSTYP-------------TSTYASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 571 SAIKSAIMTTA 581
S I++AI TA
Sbjct: 246 SNIRAAIENTA 256
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYV 561
DI APG +IL+ + +G + N +SGTSM+ PH G+ AY+
Sbjct: 203 DIFAPGSNILSTW--IGGTT-----------NTISGTSMATPHIVGLGAYL 240
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 13/64 (20%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
DI PG IL+ + +G + +SGTSM+ PH AG+AAY+ + +
Sbjct: 200 DIFGPGTSILSTW--IGGSTRS-----------ISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 571 SAIK 574
SA +
Sbjct: 247 SACR 250
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 13/64 (20%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
DI PG IL+ + +G + +SGTSM+ PH AG+AAY+ + +
Sbjct: 200 DIFGPGTSILSTW--IGGSTRS-----------ISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 571 SAIK 574
SA +
Sbjct: 247 SACR 250
>pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
pdb|3D36|B Chain B, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
Length = 244
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 502 EIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYV 561
E V DIL+P + VDI A +P + + E RQ NV+ + P+ + YV
Sbjct: 91 ERVIDILRPLANMSCVDIQATLAPFSVIGER-EKFRQCLLNVMKNAIEAMPNGGTLQVYV 149
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 13/49 (26%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAA 559
D+ APG I +A+ G + +SGTSM+ PH AGVAA
Sbjct: 196 DLFAPGSQIKSAWYDGG-------------YKTISGTSMATPHVAGVAA 231
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 17/110 (15%)
Query: 194 NNKIIGARYYTTDDISGNTA--RDIQGHGTHTASTASGNE---VKDASFFGV------GQ 242
N++ G R + D N A D GHGTH A T G++ K+ + GV G
Sbjct: 43 NHEEFGGRSVSGYDFVDNDADSSDCNGHGTHVAGTIGGSQYGVAKNVNIVGVRVLSCSGS 102
Query: 243 GTARGGVPSARIAAYKVCSPEL------GCAETAILGAFDDAIADGVDII 286
GT G + A P + G TA+ A AI GV +
Sbjct: 103 GTTSGVISGVDWVAQNASGPSVANMSLGGGQSTALDSAVQGAIQSGVSFM 152
>pdb|4B4K|A Chain A, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|B Chain B, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|C Chain C, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|D Chain D, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|E Chain E, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|F Chain F, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|G Chain G, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|H Chain H, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|I Chain I, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|J Chain J, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|K Chain K, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|L Chain L, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|A Chain A, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|B Chain B, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|C Chain C, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|D Chain D, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|A Chain A, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|B Chain B, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|C Chain C, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|D Chain D, Crystal Structure Of Bacillus Anthracis Pure
Length = 181
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 247 GGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDI 285
GGVP A +A K S G ILG+F D I D +++
Sbjct: 127 GGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALEL 165
>pdb|1XMP|A Chain A, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|B Chain B, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|C Chain C, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|D Chain D, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|E Chain E, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|F Chain F, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|G Chain G, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|H Chain H, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
Length = 170
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 247 GGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDI 285
GGVP A +A K S G ILG+F D I D +++
Sbjct: 116 GGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALEL 154
>pdb|1IE7|C Chain C, Phosphate Inhibited Bacillus Pasteurii Urease Crystal
Structure
Length = 570
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 30/136 (22%)
Query: 232 VKDASFFGVGQGTARGGVPSARIAAYKVCSPEL--GCAETAILGAFDDAIADGVDIITIS 289
VKD G+G+G +P++ G I+G + IA I+T
Sbjct: 89 VKDGYIVGIGKG----------------GNPDIMDGVTPNMIVGTATEVIAAEGKIVT-- 130
Query: 290 LGGQNT-LNFTQ-DVIAIGSFHAMAKGVLTLHSAGNSGPFIGS---TVSVAPWLMSVAAS 344
GG +T ++F D + + A+A G+ TL G +GP GS TV+ PW +
Sbjct: 131 AGGIDTHVHFINPDQVDV----ALANGITTLFGGG-TGPAEGSKATTVTPGPWNIEKMLK 185
Query: 345 NTDRLFVDKVVLGSGQ 360
+T+ L ++ +LG G
Sbjct: 186 STEGLPINVGILGKGH 201
>pdb|1UBP|C Chain C, Crystal Structure Of Urease From Bacillus Pasteurii
Inhibited With Beta-Mercaptoethanol At 1.65 Angstroms
Resolution
pdb|2UBP|C Chain C, Structure Of Native Urease From Bacillus Pasteurii
pdb|3UBP|C Chain C, Diamidophosphate Inhibited Bacillus Pasteurii Urease
pdb|4UBP|C Chain C, Structure Of Bacillus Pasteurii Urease Inhibited With
Acetohydroxamic Acid At 1.55 A Resolution
pdb|1S3T|C Chain C, Borate Inhibited Bacillus Pasteurii Urease Crystal
Structure
pdb|4AC7|C Chain C, The Crystal Structure Of Sporosarcina Pasteurii Urease In
Complex With Citrate
Length = 570
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 30/136 (22%)
Query: 232 VKDASFFGVGQGTARGGVPSARIAAYKVCSPEL--GCAETAILGAFDDAIADGVDIITIS 289
VKD G+G+G +P++ G I+G + IA I+T
Sbjct: 89 VKDGYIVGIGKG----------------GNPDIMDGVTPNMIVGTATEVIAAEGKIVT-- 130
Query: 290 LGGQNT-LNFTQ-DVIAIGSFHAMAKGVLTLHSAGNSGPFIGS---TVSVAPWLMSVAAS 344
GG +T ++F D + + A+A G+ TL G +GP GS TV+ PW +
Sbjct: 131 AGGIDTHVHFINPDQVDV----ALANGITTLFGGG-TGPAEGSKATTVTPGPWNIEKMLK 185
Query: 345 NTDRLFVDKVVLGSGQ 360
+T+ L ++ +LG G
Sbjct: 186 STEGLPINVGILGKGH 201
>pdb|1QVW|A Chain A, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVW|B Chain B, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
Length = 237
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 24/156 (15%)
Query: 604 VEAVNPGLVY--ETFEQDYIIMLCSMGYDERNIGK--ISGNISTCPKGSDK--------- 650
VEA++P + E FE D++ G+DE ++ K ++G T K D
Sbjct: 29 VEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNKTLAKI 88
Query: 651 ATPKDLN---YPSMAAQVSPGKSFTINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPE 707
TPK++N Y A G F ++P+ +A+ Y N +V+ V
Sbjct: 89 KTPKEVNADDYQIFMASAGHGTLF--DYPKAKDLQDIASEIY-----ANGGVVA-AVXHG 140
Query: 708 SLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWSD 743
F L +KK+ + GK + V ++M D
Sbjct: 141 PAMFDGLTDKKTGRPLIEGKSITGFTDVGETIMGVD 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,175,286
Number of Sequences: 62578
Number of extensions: 944776
Number of successful extensions: 2422
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 2128
Number of HSP's gapped (non-prelim): 214
length of query: 753
length of database: 14,973,337
effective HSP length: 106
effective length of query: 647
effective length of database: 8,340,069
effective search space: 5396024643
effective search space used: 5396024643
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)