Query 044745
Match_columns 753
No_of_seqs 462 out of 3140
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:21:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 2.5E-51 5.3E-56 440.5 28.2 290 126-582 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 4.7E-50 1E-54 447.2 21.5 289 142-613 305-618 (639)
3 cd07479 Peptidases_S8_SKI-1_li 100.0 1.3E-48 2.7E-53 407.1 23.0 243 144-585 1-254 (255)
4 cd05562 Peptidases_S53_like Pe 100.0 1.4E-48 3.1E-53 409.7 23.0 271 147-608 1-274 (275)
5 cd07497 Peptidases_S8_14 Pepti 100.0 3.1E-48 6.6E-53 413.2 23.4 288 150-581 1-311 (311)
6 cd07475 Peptidases_S8_C5a_Pept 100.0 7E-48 1.5E-52 421.2 26.5 311 142-608 1-346 (346)
7 cd07478 Peptidases_S8_CspA-lik 100.0 3.4E-47 7.4E-52 425.1 29.3 406 148-599 1-455 (455)
8 cd07489 Peptidases_S8_5 Peptid 100.0 9.2E-47 2E-51 406.1 25.1 283 138-611 1-301 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 3E-46 6.4E-51 391.1 23.5 250 143-588 2-256 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 5.2E-45 1.1E-49 389.8 26.6 279 150-606 1-295 (295)
11 cd05561 Peptidases_S8_4 Peptid 100.0 3.2E-45 6.9E-50 378.1 22.6 235 153-599 1-239 (239)
12 cd07483 Peptidases_S8_Subtilis 100.0 8E-45 1.7E-49 386.1 22.6 255 151-582 1-291 (291)
13 cd07493 Peptidases_S8_9 Peptid 100.0 2.5E-44 5.5E-49 377.4 24.0 245 152-582 1-261 (261)
14 cd07481 Peptidases_S8_Bacillop 100.0 3.1E-44 6.6E-49 377.3 23.7 247 150-582 1-264 (264)
15 cd04857 Peptidases_S8_Tripepti 100.0 6.8E-44 1.5E-48 386.6 25.7 221 214-584 182-412 (412)
16 KOG1153 Subtilisin-related pro 100.0 9E-45 2E-49 377.4 17.4 325 47-582 77-461 (501)
17 cd07487 Peptidases_S8_1 Peptid 100.0 1.2E-43 2.7E-48 372.9 25.0 257 150-582 1-264 (264)
18 cd07485 Peptidases_S8_Fervidol 100.0 3.5E-43 7.7E-48 371.0 23.2 263 142-580 1-273 (273)
19 cd07494 Peptidases_S8_10 Pepti 100.0 3.1E-42 6.7E-47 366.2 24.4 256 135-587 6-288 (298)
20 cd04077 Peptidases_S8_PCSK9_Pr 100.0 2.4E-42 5.3E-47 361.2 22.4 232 143-583 17-255 (255)
21 cd07484 Peptidases_S8_Thermita 100.0 3E-42 6.4E-47 361.7 22.6 246 135-584 14-259 (260)
22 cd07490 Peptidases_S8_6 Peptid 100.0 4E-42 8.6E-47 359.5 23.3 252 152-582 1-254 (254)
23 cd04847 Peptidases_S8_Subtilis 100.0 1.3E-42 2.8E-47 370.2 19.3 263 154-582 2-291 (291)
24 cd07496 Peptidases_S8_13 Pepti 100.0 1.6E-41 3.4E-46 360.7 23.6 255 152-580 1-285 (285)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 2.2E-41 4.8E-46 361.4 23.8 277 146-582 2-293 (293)
26 cd07480 Peptidases_S8_12 Pepti 100.0 2.1E-41 4.5E-46 361.7 22.7 263 145-605 2-297 (297)
27 cd07498 Peptidases_S8_15 Pepti 100.0 2E-41 4.3E-46 351.6 21.1 241 153-580 1-242 (242)
28 cd04843 Peptidases_S8_11 Pepti 100.0 8.4E-41 1.8E-45 351.3 21.5 247 138-582 3-277 (277)
29 cd07473 Peptidases_S8_Subtilis 100.0 1.7E-40 3.7E-45 348.2 23.6 249 151-582 2-259 (259)
30 cd07477 Peptidases_S8_Subtilis 100.0 2.6E-40 5.5E-45 340.3 22.2 226 152-580 1-229 (229)
31 PF00082 Peptidase_S8: Subtila 100.0 2.5E-41 5.3E-46 358.9 14.3 275 154-608 1-282 (282)
32 cd07491 Peptidases_S8_7 Peptid 100.0 2.3E-40 4.9E-45 342.5 18.5 156 150-347 2-172 (247)
33 cd04059 Peptidases_S8_Protein_ 100.0 7.3E-40 1.6E-44 350.4 18.9 251 137-582 26-297 (297)
34 cd07492 Peptidases_S8_8 Peptid 100.0 5.8E-39 1.3E-43 328.6 21.4 222 152-582 1-222 (222)
35 cd07482 Peptidases_S8_Lantibio 100.0 7E-39 1.5E-43 342.3 21.4 250 152-580 1-294 (294)
36 cd04848 Peptidases_S8_Autotran 100.0 3.1E-38 6.7E-43 332.1 21.0 243 149-582 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 3.2E-37 6.9E-42 328.6 20.6 352 49-609 48-466 (1033)
38 cd07488 Peptidases_S8_2 Peptid 100.0 3E-33 6.6E-38 288.4 16.2 194 213-581 33-247 (247)
39 KOG1114 Tripeptidyl peptidase 100.0 9.1E-33 2E-37 306.8 20.2 240 216-608 309-557 (1304)
40 cd00306 Peptidases_S8_S53 Pept 100.0 2E-31 4.3E-36 274.7 22.1 234 153-580 1-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 8.9E-24 1.9E-28 241.5 22.9 269 142-608 131-420 (508)
42 KOG3526 Subtilisin-like propro 99.9 3.6E-23 7.7E-28 210.7 9.9 153 142-327 152-316 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 2E-17 4.2E-22 181.2 14.3 103 242-348 80-198 (361)
44 cd02120 PA_subtilisin_like PA_ 98.9 6.8E-09 1.5E-13 96.3 11.7 115 354-477 2-125 (126)
45 PF05922 Inhibitor_I9: Peptida 98.9 4E-09 8.7E-14 89.9 7.7 76 52-129 1-82 (82)
46 cd02133 PA_C5a_like PA_C5a_lik 98.9 9.4E-09 2E-13 97.5 10.2 107 374-501 25-141 (143)
47 KOG3525 Subtilisin-like propro 98.5 7.3E-07 1.6E-11 99.0 10.8 157 137-328 20-188 (431)
48 COG4934 Predicted protease [Po 98.2 6.8E-06 1.5E-10 98.2 12.7 161 142-343 219-395 (1174)
49 PF06280 DUF1034: Fn3-like dom 98.2 1.5E-05 3.3E-10 72.2 11.1 81 671-752 8-111 (112)
50 cd04816 PA_SaNapH_like PA_SaNa 98.1 8.8E-06 1.9E-10 75.0 7.9 92 375-477 17-121 (122)
51 cd02130 PA_ScAPY_like PA_ScAPY 98.0 4.8E-05 1E-09 70.1 10.9 78 396-477 32-121 (122)
52 PF02225 PA: PA domain; Inter 97.9 9.1E-06 2E-10 72.0 4.5 70 396-468 20-101 (101)
53 cd04818 PA_subtilisin_1 PA_sub 97.9 3.2E-05 7E-10 70.8 8.0 80 394-477 26-117 (118)
54 cd02122 PA_GRAIL_like PA _GRAI 97.9 4.9E-05 1.1E-09 71.3 8.9 82 394-478 43-138 (138)
55 cd00538 PA PA: Protease-associ 97.8 5.5E-05 1.2E-09 69.8 7.4 80 394-476 29-124 (126)
56 cd02127 PA_hPAP21_like PA_hPAP 97.7 0.00013 2.9E-09 66.4 8.6 80 395-478 21-116 (118)
57 cd02129 PA_hSPPL_like PA_hSPPL 97.7 0.0001 2.2E-09 66.9 7.6 74 394-470 29-114 (120)
58 cd02126 PA_EDEM3_like PA_EDEM3 97.7 0.00013 2.7E-09 67.6 7.8 78 395-476 27-124 (126)
59 cd02124 PA_PoS1_like PA_PoS1_l 97.6 0.00019 4.1E-09 66.5 8.0 81 393-477 39-128 (129)
60 cd02125 PA_VSR PA_VSR: Proteas 97.6 0.00026 5.7E-09 65.4 8.0 83 394-477 21-126 (127)
61 cd02132 PA_GO-like PA_GO-like: 97.5 0.00027 5.9E-09 66.6 7.8 77 395-477 48-138 (139)
62 cd04817 PA_VapT_like PA_VapT_l 97.5 0.00043 9.2E-09 64.8 8.3 65 406-471 51-134 (139)
63 cd04813 PA_1 PA_1: Protease-as 97.4 0.00035 7.6E-09 63.6 7.1 74 393-471 25-112 (117)
64 cd04819 PA_2 PA_2: Protease-as 97.4 0.0017 3.7E-08 60.2 11.0 84 374-473 22-122 (127)
65 cd02123 PA_C_RZF_like PA_C-RZF 97.3 0.00079 1.7E-08 64.5 7.7 76 395-473 50-142 (153)
66 PF14874 PapD-like: Flagellar- 95.5 0.17 3.6E-06 44.7 10.8 77 672-752 21-97 (102)
67 cd04815 PA_M28_2 PA_M28_2: Pro 95.4 0.052 1.1E-06 50.8 7.3 70 407-477 35-133 (134)
68 PF10633 NPCBM_assoc: NPCBM-as 94.2 0.14 3.1E-06 42.8 6.4 63 671-734 5-69 (78)
69 cd02128 PA_TfR PA_TfR: Proteas 93.1 0.26 5.6E-06 48.3 6.8 63 407-470 51-155 (183)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 91.9 0.58 1.3E-05 43.7 7.2 59 374-442 21-96 (137)
71 cd04822 PA_M28_1_3 PA_M28_1_3: 91.8 0.68 1.5E-05 44.1 7.7 60 375-444 20-102 (151)
72 PF11614 FixG_C: IG-like fold 91.1 1.7 3.7E-05 39.5 9.5 56 672-729 32-87 (118)
73 KOG2442 Uncharacterized conser 90.8 0.74 1.6E-05 50.8 7.6 71 407-478 91-175 (541)
74 cd04814 PA_M28_1 PA_M28_1: Pro 90.6 0.63 1.4E-05 43.8 6.1 59 374-442 19-100 (142)
75 PF06030 DUF916: Bacterial pro 89.8 8.5 0.00018 35.2 12.7 70 671-742 27-119 (121)
76 KOG1114 Tripeptidyl peptidase 81.7 0.98 2.1E-05 53.5 2.7 24 147-170 77-100 (1304)
77 cd02131 PA_hNAALADL2_like PA_h 81.7 1.5 3.3E-05 41.4 3.5 33 408-441 37-74 (153)
78 PF00345 PapD_N: Pili and flag 75.0 29 0.00062 31.5 9.9 67 674-742 17-89 (122)
79 PF00635 Motile_Sperm: MSP (Ma 73.9 22 0.00048 31.3 8.7 53 672-728 19-71 (109)
80 KOG4628 Predicted E3 ubiquitin 73.8 9.5 0.0002 41.2 7.1 76 395-471 62-150 (348)
81 cd02121 PA_GCPII_like PA_GCPII 72.3 3.7 8E-05 41.7 3.5 35 407-442 67-106 (220)
82 COG1470 Predicted membrane pro 68.3 29 0.00063 38.7 9.4 68 672-741 398-467 (513)
83 TIGR02745 ccoG_rdxA_fixG cytoc 64.1 31 0.00067 38.9 9.0 55 672-728 347-401 (434)
84 smart00635 BID_2 Bacterial Ig- 63.9 21 0.00045 29.9 5.9 41 700-745 3-43 (81)
85 PF07718 Coatamer_beta_C: Coat 63.7 62 0.0014 30.3 9.3 43 698-742 96-138 (140)
86 COG1470 Predicted membrane pro 63.1 67 0.0015 36.0 10.9 63 671-735 284-353 (513)
87 PF07172 GRP: Glycine rich pro 59.7 7.4 0.00016 34.0 2.4 22 1-22 1-22 (95)
88 PLN03080 Probable beta-xylosid 50.7 45 0.00097 40.7 7.9 78 672-752 685-779 (779)
89 KOG3920 Uncharacterized conser 48.5 19 0.00041 34.0 3.3 82 393-478 72-171 (193)
90 PF07705 CARDB: CARDB; InterP 44.4 1.9E+02 0.0042 24.4 10.2 52 671-727 19-72 (101)
91 cd04821 PA_M28_1_2 PA_M28_1_2: 42.0 37 0.0008 32.6 4.3 35 404-439 42-100 (157)
92 PF05506 DUF756: Domain of unk 41.6 1.6E+02 0.0035 25.0 7.9 46 672-724 19-65 (89)
93 PF07610 DUF1573: Protein of u 40.4 1E+02 0.0023 22.6 5.6 43 678-724 3-45 (45)
94 PF12690 BsuPI: Intracellular 38.6 90 0.002 26.4 5.7 27 707-734 52-78 (82)
95 PRK15098 beta-D-glucoside gluc 37.4 73 0.0016 38.9 6.9 54 671-728 667-729 (765)
96 KOG2018 Predicted dinucleotide 36.5 66 0.0014 34.2 5.4 77 245-322 137-245 (430)
97 PRK10081 entericidin B membran 35.8 34 0.00075 25.7 2.3 10 1-10 1-10 (48)
98 PF02845 CUE: CUE domain; Int 33.2 41 0.00089 24.3 2.5 23 558-580 5-27 (42)
99 PF00927 Transglut_C: Transglu 33.0 3.3E+02 0.0073 23.7 9.1 55 671-728 15-78 (107)
100 cd00407 Urease_beta Urease bet 32.5 74 0.0016 27.9 4.2 49 672-723 19-82 (101)
101 COG5510 Predicted small secret 31.5 51 0.0011 24.1 2.5 7 1-7 1-7 (44)
102 PRK09810 entericidin A; Provis 29.8 47 0.001 24.1 2.2 9 1-9 1-9 (41)
103 PRK13202 ureB urease subunit b 29.4 86 0.0019 27.6 4.1 48 673-723 21-83 (104)
104 TIGR00192 urease_beta urease, 29.4 85 0.0018 27.5 4.1 49 672-723 19-82 (101)
105 TIGR00845 caca sodium/calcium 28.8 3E+02 0.0066 34.1 10.0 65 657-728 405-476 (928)
106 COG1930 CbiN ABC-type cobalt t 28.1 62 0.0013 27.7 2.9 26 1-26 1-26 (97)
107 PF08260 Kinin: Insect kinin p 27.6 28 0.00061 16.0 0.4 6 494-499 3-8 (8)
108 PRK15019 CsdA-binding activato 27.5 55 0.0012 31.1 2.9 33 542-575 77-109 (147)
109 TIGR03391 FeS_syn_CsdE cystein 26.4 60 0.0013 30.5 2.9 34 542-576 72-105 (138)
110 PF04255 DUF433: Protein of un 25.2 57 0.0012 25.3 2.1 38 541-578 11-54 (56)
111 PRK15308 putative fimbrial pro 24.9 2.1E+02 0.0047 29.4 6.8 51 675-726 35-100 (234)
112 PRK13205 ureB urease subunit b 24.7 1E+02 0.0022 29.0 4.0 49 672-723 19-82 (162)
113 PF13940 Ldr_toxin: Toxin Ldr, 23.9 58 0.0013 22.4 1.6 13 549-561 14-26 (35)
114 PRK13201 ureB urease subunit b 23.6 1.1E+02 0.0025 28.1 4.0 49 672-723 19-82 (136)
115 PRK09296 cysteine desufuration 23.0 75 0.0016 29.8 2.9 33 542-575 67-99 (138)
116 PF05753 TRAP_beta: Translocon 22.9 4.7E+02 0.01 25.7 8.6 66 671-741 38-110 (181)
117 PF08821 CGGC: CGGC domain; I 22.5 3.1E+02 0.0068 24.5 6.6 41 250-293 36-76 (107)
118 PRK13203 ureB urease subunit b 22.4 2E+02 0.0043 25.4 5.1 49 672-723 19-82 (102)
119 smart00546 CUE Domain that may 21.8 1.2E+02 0.0026 21.9 3.2 24 557-580 5-28 (43)
120 COG2166 sufE Cysteine desulfur 21.8 77 0.0017 29.8 2.7 32 543-575 73-104 (144)
121 PF02657 SufE: Fe-S metabolism 21.5 87 0.0019 28.8 3.0 33 543-576 59-91 (125)
122 PRK13204 ureB urease subunit b 20.4 1.4E+02 0.003 28.3 3.9 49 672-723 42-105 (159)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-51 Score=440.47 Aligned_cols=290 Identities=57% Similarity=0.912 Sum_probs=248.4
Q ss_pred eccccCCCcccccccccccc-----CCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccc---cCcce
Q 044745 126 LQLHTTRSWDFMGLNQSITR-----KRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFT---CNNKI 197 (753)
Q Consensus 126 ~~~~~~~s~~~~g~~~~~~~-----~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~---~n~kl 197 (753)
+++++++++.++|++ .+|. .+++|+||+|||||||||++||+|.+.+..+.+..|.+.|..+..+. |++|+
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 79 (307)
T cd04852 1 YQLHTTRSPDFLGLP-GAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKL 79 (307)
T ss_pred CCccccCCHHHcCCC-CCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeE
Confidence 467889999999999 5555 48999999999999999999999999988889999999999988774 99999
Q ss_pred eeeeecCCC---------CCCCCCCCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCH
Q 044745 198 IGARYYTTD---------DISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAE 268 (753)
Q Consensus 198 ~g~~~~~g~---------~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~ 268 (753)
++.++|... .....++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++....+..
T Consensus 80 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~ 159 (307)
T cd04852 80 IGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFG 159 (307)
T ss_pred EEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccH
Confidence 999999432 12346678899999999999999987666566666677899999999999999987334889
Q ss_pred HHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCcc
Q 044745 269 TAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDR 348 (753)
Q Consensus 269 ~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~ 348 (753)
+++++||++|++++++|||||||... .....+.+..++..+.++|++||+||||+|+...+.++..||+++||+++
T Consensus 160 ~~~~~ai~~a~~~g~~Vin~S~G~~~-~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~--- 235 (307)
T cd04852 160 SDILAAIDQAIADGVDVISYSIGGGS-PDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST--- 235 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCC-CCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc---
Confidence 99999999999999999999999883 24566788888889999999999999999988778888899999998621
Q ss_pred ceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHh
Q 044745 349 LFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHK 428 (753)
Q Consensus 349 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~ 428 (753)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCC
Q 044745 429 AGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDIL 508 (753)
Q Consensus 429 ~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~ 508 (753)
.
T Consensus 236 -------------------------------------------------------------------------------~ 236 (307)
T cd04852 236 -------------------------------------------------------------------------------L 236 (307)
T ss_pred -------------------------------------------------------------------------------C
Confidence 4
Q ss_pred CCceeeCCccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 509 KPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 509 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
||||+|||.+|++++.... ..........|..++|||||||+|||++|||+|++|+|+|+|||++|++||+
T Consensus 237 ~~di~apG~~i~~~~~~~~---~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 237 KPDIAAPGVDILAAWTPEG---ADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ccceeeccCceeecccCcc---ccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 7799999999999987531 1111223367999999999999999999999999999999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=4.7e-50 Score=447.24 Aligned_cols=289 Identities=19% Similarity=0.172 Sum_probs=210.6
Q ss_pred cccc--CCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcc---eeeeeecCCCCCCCCCCCCC
Q 044745 142 SITR--KRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNK---IIGARYYTTDDISGNTARDI 216 (753)
Q Consensus 142 ~~~~--~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~k---l~g~~~~~g~~~~~~~~~D~ 216 (753)
.+|+ .+.+|+||+|||||||||++||+|.+.- .+-+....|....+. .++. -+.+++|..+ ..+|.|+
T Consensus 305 ~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni-~~n~~el~GrdgiDd---D~nG~vdd~~G~nfVd~---~~~P~D~ 377 (639)
T PTZ00262 305 ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNI-DVNVKELHGRKGIDD---DNNGNVDDEYGANFVNN---DGGPMDD 377 (639)
T ss_pred HHHHHhhccCCCCcEEEEEccCCCCCChhhhhhc-ccccccccCcccccc---ccCCcccccccccccCC---CCCCCCC
Confidence 5665 4678999999999999999999998641 000000111000000 0111 1223444221 2456899
Q ss_pred CCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEeecCCCCC
Q 044745 217 QGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITISLGGQNT 295 (753)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~ 295 (753)
.||||||||||||...++ ..+.||||+|+|+++|+++. .| +..+++++||+||++.|++|||||||+..
T Consensus 378 ~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~-~G~G~~sdI~~AI~yA~~~GA~VINmSlG~~~- 447 (639)
T PTZ00262 378 NYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDS-HKLGRLGDMFKCFDYCISREAHMINGSFSFDE- 447 (639)
T ss_pred CCcchHHHHHHhccccCC--------CceeeeecccccceEEEecC-CCCccHHHHHHHHHHHHHCCCCEEEeccccCC-
Confidence 999999999999975431 12389999999999999987 55 78899999999999999999999999762
Q ss_pred CCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCC--------------ccC----CCCceEEeecccCccceeeeEEeC
Q 044745 296 LNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS--------------TVS----VAPWLMSVAASNTDRLFVDKVVLG 357 (753)
Q Consensus 296 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~~----~~p~vitVga~~~~~~~~~~~~~~ 357 (753)
....+..++.+|.++|++||+||||+|..... ++. ..|++|+|||+..+.
T Consensus 448 ---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~--------- 515 (639)
T PTZ00262 448 ---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK--------- 515 (639)
T ss_pred ---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC---------
Confidence 23467788889999999999999999864311 111 235677777643221
Q ss_pred CCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEe
Q 044745 358 SGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSL 437 (753)
Q Consensus 358 ~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~ 437 (753)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCc
Q 044745 438 NDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGV 517 (753)
Q Consensus 438 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~ 517 (753)
......+.||++|. .++||+|||+
T Consensus 516 -------------------------------------------------~~~~s~s~~Snyg~-------~~VDIaAPG~ 539 (639)
T PTZ00262 516 -------------------------------------------------NNQYSLSPNSFYSA-------KYCQLAAPGT 539 (639)
T ss_pred -------------------------------------------------CCcccccccccCCC-------CcceEEeCCC
Confidence 00012344566652 1349999999
Q ss_pred cEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccC
Q 044745 518 DILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFG 597 (753)
Q Consensus 518 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G 597 (753)
+|+++++.+ .|..++|||||||||||+||||++++|+|+++||+++|+.||.+++.. +..+|
T Consensus 540 dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~-----~n~~~ 601 (639)
T PTZ00262 540 NIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL-----KNKVK 601 (639)
T ss_pred CeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC-----CCccc
Confidence 999998764 699999999999999999999999999999999999999999987654 22233
Q ss_pred -CCCCCccccCCCCeee
Q 044745 598 -SGHINPVEAVNPGLVY 613 (753)
Q Consensus 598 -~G~in~~~Al~~glv~ 613 (753)
.|+||+++|++..+-+
T Consensus 602 wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 602 WGGYLDIHHAVNLAIAS 618 (639)
T ss_pred cCcEEcHHHHHHHHHhc
Confidence 3899999999866644
No 3
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=1.3e-48 Score=407.15 Aligned_cols=243 Identities=25% Similarity=0.363 Sum_probs=199.5
Q ss_pred ccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchh
Q 044745 144 TRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHT 223 (753)
Q Consensus 144 ~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThV 223 (753)
|+++++|+||+|||||||||.+||+|.+. ....+|..+ ....|..||||||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~-------------------------~~~~~~~~~----~~~~d~~gHGT~V 51 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV-------------------------KERTNWTNE----KTLDDGLGHGTFV 51 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc-------------------------ccccccCCC----CCCCCCCCcHHHH
Confidence 89999999999999999999999999742 011122211 3456788999999
Q ss_pred hcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccH
Q 044745 224 ASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDV 302 (753)
Q Consensus 224 AGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~ 302 (753)
||||+|+.. .+.||||+|+|+.+|++.+ .+ +..+.++++|+||++++++|||||||... +.+.+
T Consensus 52 AGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~-~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~---~~~~~ 116 (255)
T cd07479 52 AGVIASSRE-----------QCLGFAPDAEIYIFRVFTN-NQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD---FMDKP 116 (255)
T ss_pred HHHHHccCC-----------CceeECCCCEEEEEEeecC-CCCchHHHHHHHHHhhhhcCCCEEEeeccCCC---CCCcH
Confidence 999999741 1389999999999999987 55 66788999999999999999999999862 23456
Q ss_pred HHHHHHHHhhCCcEEEEecCCCCCCCCC--ccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEE
Q 044745 303 IAIGSFHAMAKGVLTLHSAGNSGPFIGS--TVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLV 380 (753)
Q Consensus 303 ~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv 380 (753)
+..++.++.++|++||+||||+|+...+ .+...+++|+|||++.+
T Consensus 117 ~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~--------------------------------- 163 (255)
T cd07479 117 FVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD--------------------------------- 163 (255)
T ss_pred HHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC---------------------------------
Confidence 7777778889999999999999976443 34566889999875422
Q ss_pred eCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhh
Q 044745 381 DGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDN 460 (753)
Q Consensus 381 ~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~ 460 (753)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCC----CCCCCCCCceeeCCccEEeccCCCCCCCCCCCCc
Q 044745 461 FNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNE----IVPDILKPDISAPGVDILAAFSPLGAVSDDPEDK 536 (753)
Q Consensus 461 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~----~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~ 536 (753)
+.++.|||+|++. ..++++||||.|||.+|+++...
T Consensus 164 -----------------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~----------- 203 (255)
T cd07479 164 -----------------------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK----------- 203 (255)
T ss_pred -----------------------------CccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC-----------
Confidence 4578899999652 13678999999999999987654
Q ss_pred ccccceeeccccchhHHHHHHHHHHHhhCC----CCCHHHHHHHHHhcCCCCC
Q 044745 537 RQAKFNVVSGTSMSCPHAAGVAAYVKSFHP----DWSPSAIKSAIMTTAWPMN 585 (753)
Q Consensus 537 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~P----~ls~~~ik~~L~~TA~~~~ 585 (753)
..|..++|||||||||||++|||+|++| .++|++||++|++||+++.
T Consensus 204 --~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 204 --GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred --CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 3688999999999999999999999998 7999999999999999875
No 4
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=1.4e-48 Score=409.69 Aligned_cols=271 Identities=26% Similarity=0.243 Sum_probs=204.9
Q ss_pred CCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcc
Q 044745 147 RSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTAST 226 (753)
Q Consensus 147 ~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGi 226 (753)
+++|+||+|||||||||.+||++.+...+ ++.+...+..+ .....|..+||||||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~--------------------~l~~~~~~~~~---~~~~~d~~gHGT~vAgi 57 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG--------------------DLPGNVNVLGD---LDGGSGGGDEGRAMLEI 57 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC--------------------CCCcceeeccc---cCCCCCCCchHHHHHHH
Confidence 57899999999999999999865432111 11111111111 13456788999999999
Q ss_pred cccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHH
Q 044745 227 ASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIG 306 (753)
Q Consensus 227 iag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a 306 (753)
| .||||+|+|+.+|+. ...+++++||+|++++|++|||||||......+.+..+..+
T Consensus 58 i------------------~GvAP~a~l~~~~~~-----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~a 114 (275)
T cd05562 58 I------------------HDIAPGAELAFHTAG-----GGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQA 114 (275)
T ss_pred H------------------hccCCCCEEEEEecC-----CCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHH
Confidence 8 578999999998863 34788999999999999999999999863332344577888
Q ss_pred HHHHhhC-CcEEEEecCCCCCCCC-CccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCC
Q 044745 307 SFHAMAK-GVLTLHSAGNSGPFIG-STVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMD 384 (753)
Q Consensus 307 ~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~ 384 (753)
+.++.++ |++||+||||+|.... ..+...|++|+|||++.+.......
T Consensus 115 i~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s------------------------------ 164 (275)
T cd05562 115 VDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS------------------------------ 164 (275)
T ss_pred HHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc------------------------------
Confidence 8888887 9999999999998643 3356789999999986542100000
Q ss_pred CCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHH
Q 044745 385 VSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSI 464 (753)
Q Consensus 385 ~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 464 (753)
|.. .
T Consensus 165 -------------~~~------------------------------~--------------------------------- 168 (275)
T cd05562 165 -------------DPA------------------------------P--------------------------------- 168 (275)
T ss_pred -------------ccc------------------------------c---------------------------------
Confidence 000 0
Q ss_pred HHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCc-cEEeccCCCCCCCCCCCCccccccee
Q 044745 465 YSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGV-DILAAFSPLGAVSDDPEDKRQAKFNV 543 (753)
Q Consensus 465 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~ 543 (753)
.......+.||++||+. ++++||||+|||. ++.+.... +.|..
T Consensus 169 ---------------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~-------------~~~~~ 212 (275)
T cd05562 169 ---------------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG-------------DGPPN 212 (275)
T ss_pred ---------------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC-------------Cceee
Confidence 00012345678899986 7899999999975 44444332 47899
Q ss_pred eccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCC
Q 044745 544 VSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608 (753)
Q Consensus 544 ~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 608 (753)
++|||||||||||++|||+|++|+|+++|||++|++||+++...+ .+..||||+||+.+|++
T Consensus 213 ~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g---~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 213 FFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPG---YDNASGSGLVDADRAVA 274 (275)
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCC---CCCCcCcCcccHHHHhh
Confidence 999999999999999999999999999999999999999887544 36799999999999986
No 5
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.1e-48 Score=413.19 Aligned_cols=288 Identities=25% Similarity=0.223 Sum_probs=193.1
Q ss_pred CCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhccccc
Q 044745 150 ESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASG 229 (753)
Q Consensus 150 G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag 229 (753)
|+||+|||||||||.+||+|.++... .|.. .|.+...+....++.+. ....+.|++||||||||||||
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~------~~d~~~~~~~g~d~~~~--~~~~~~D~~gHGThvAGiiag 68 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKL------KFDYKAYLLPGMDKWGG--FYVIMYDFFSHGTSCASVAAG 68 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccc------ccCcCCCccCCcCCCCC--ccCCCCCccccchhHHHHHhc
Confidence 89999999999999999999754210 1110 11111122222233221 113467899999999999999
Q ss_pred Cccccccccccc-ccceeecccccceeccccccCCCCCCHHHHHH-------HHHHH--HHCCCcEEEeecCCCCCCC--
Q 044745 230 NEVKDASFFGVG-QGTARGGVPSARIAAYKVCSPELGCAETAILG-------AFDDA--IADGVDIITISLGGQNTLN-- 297 (753)
Q Consensus 230 ~~~~~~~~~G~~-~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~-------ai~~a--~~~gvdVIn~SlG~~~~~~-- 297 (753)
......+.+++. ...+.||||+|+|+.+|++.....+....+.+ +++|. .+++++|||||||......
T Consensus 69 ~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~ 148 (311)
T cd07497 69 RGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTG 148 (311)
T ss_pred cCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCccc
Confidence 864433322221 23459999999999999987522233333333 33443 3679999999999862211
Q ss_pred --CcccHHHHHHHHH-hhCCcEEEEecCCCCCCCCC--ccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCC
Q 044745 298 --FTQDVIAIGSFHA-MAKGVLTLHSAGNSGPFIGS--TVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSS 372 (753)
Q Consensus 298 --~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~ 372 (753)
...+..+...+.+ .++|+++|+||||+|+...+ .+..++++|+|||++.....+..
T Consensus 149 ~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~------------------- 209 (311)
T cd07497 149 YAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY------------------- 209 (311)
T ss_pred cccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh-------------------
Confidence 1122333333332 48999999999999986443 44578999999998643100000
Q ss_pred CCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCccccccccccc
Q 044745 373 KGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLP 452 (753)
Q Consensus 373 ~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p 452 (753)
.+ ..
T Consensus 210 -----~~---------------------------------------------------------~~-------------- 213 (311)
T cd07497 210 -----LF---------------------------------------------------------GY-------------- 213 (311)
T ss_pred -----hh---------------------------------------------------------cc--------------
Confidence 00 00
Q ss_pred EEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCC
Q 044745 453 AVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDD 532 (753)
Q Consensus 453 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 532 (753)
.....+.++.||||||+. ++++||||+|||++|+++.+......
T Consensus 214 --------------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~-- 257 (311)
T cd07497 214 --------------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGG-- 257 (311)
T ss_pred --------------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCc--
Confidence 001236689999999987 89999999999999999876542100
Q ss_pred CCCcccccceeeccccchhHHHHHHHHHHHhhCC------CCCHHHHHHHHHhcC
Q 044745 533 PEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHP------DWSPSAIKSAIMTTA 581 (753)
Q Consensus 533 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P------~ls~~~ik~~L~~TA 581 (753)
.......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 258 -~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 258 -ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred -ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 011224699999999999999999999999876 689999999999997
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=7e-48 Score=421.17 Aligned_cols=311 Identities=30% Similarity=0.353 Sum_probs=237.2
Q ss_pred ccccCCC-CCCCcEEEEEecCCCCCCCCccCCCCCCCC-----ccccccccCCCccccCcceeeeeecCCCCCCCCCCCC
Q 044745 142 SITRKRS-VESDIIVGVIDSGIWPESESFSDEGFGPAP-----KKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARD 215 (753)
Q Consensus 142 ~~~~~~~-~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~-----~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D 215 (753)
.+|+++. +|+||+|||||||||++||+|.+....+.. ..+...+..+...+.+.+++.+++|.....+.....|
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDD 80 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCCCC
Confidence 3788887 999999999999999999999866443321 1233334444555678899999988544322233557
Q ss_pred CCCCcchhhcccccCcccccccccccccceeecccccceeccccccC--CCCCCHHHHHHHHHHHHHCCCcEEEeecCCC
Q 044745 216 IQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSP--ELGCAETAILGAFDDAIADGVDIITISLGGQ 293 (753)
Q Consensus 216 ~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~ 293 (753)
..+|||||||||+|...+.. ....+.||||+|+|+.+|+++. ...+....++++++++++.|++|||||||..
T Consensus 81 ~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~ 155 (346)
T cd07475 81 GSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGST 155 (346)
T ss_pred CCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 89999999999999864321 1234599999999999999973 1347888999999999999999999999988
Q ss_pred CCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCc----------------cCCCCceEEeecccCccceeeeEEeC
Q 044745 294 NTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGST----------------VSVAPWLMSVAASNTDRLFVDKVVLG 357 (753)
Q Consensus 294 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~----------------~~~~p~vitVga~~~~~~~~~~~~~~ 357 (753)
.........+..++.++.++|++||+||||+|...... +...+++|+||++...
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~---------- 225 (346)
T cd07475 156 AGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK---------- 225 (346)
T ss_pred CCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc----------
Confidence 44435566788888899999999999999998654321 1234556666553310
Q ss_pred CCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEe
Q 044745 358 SGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSL 437 (753)
Q Consensus 358 ~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~ 437 (753)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCc
Q 044745 438 NDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGV 517 (753)
Q Consensus 438 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~ 517 (753)
......+.++.||+|||+. .+++||||+|||.
T Consensus 226 ----------------------------------------------~~~~~~~~~~~~S~~G~~~--~~~~~pdi~apG~ 257 (346)
T cd07475 226 ----------------------------------------------VPNPNGGQMSGFSSWGPTP--DLDLKPDITAPGG 257 (346)
T ss_pred ----------------------------------------------cCCCCCCccCCCcCCCCCc--ccCcCCeEEeCCC
Confidence 0001235678999999987 8899999999999
Q ss_pred cEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhh----CCCCCHHH----HHHHHHhcCCCCCCC-C
Q 044745 518 DILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSF----HPDWSPSA----IKSAIMTTAWPMNSS-K 588 (753)
Q Consensus 518 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~ls~~~----ik~~L~~TA~~~~~~-~ 588 (753)
+|+++...+ .|..++|||||||+|||++|||+|+ +|.|++.+ ||.+|++||.+.... +
T Consensus 258 ~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~~ 324 (346)
T cd07475 258 NIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSED 324 (346)
T ss_pred CeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccCC
Confidence 999987653 6889999999999999999999998 79999876 788999999953322 1
Q ss_pred --CCCCCCccCCCCCCccccCC
Q 044745 589 --NKDAEFAFGSGHINPVEAVN 608 (753)
Q Consensus 589 --~~~~~~~~G~G~in~~~Al~ 608 (753)
....+..+|+|+||+.+|++
T Consensus 325 ~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 325 TKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred CCccCCccccCcchhcHHHhhC
Confidence 11246788999999999985
No 7
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=3.4e-47 Score=425.08 Aligned_cols=406 Identities=23% Similarity=0.240 Sum_probs=248.0
Q ss_pred CCCCCcEEEEEecCCCCCCCCccC-CCCCCCCccccccccCCCccccCcceeeeeecC----------CCCCCCCCCCCC
Q 044745 148 SVESDIIVGVIDSGIWPESESFSD-EGFGPAPKKWKGACKGGRNFTCNNKIIGARYYT----------TDDISGNTARDI 216 (753)
Q Consensus 148 ~~G~GV~VaVIDtGid~~Hp~f~d-~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~----------g~~~~~~~~~D~ 216 (753)
++|+||+|||||||||+.||+|++ .|.+++...|++....+..- ....+...+. .+..+.....|+
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~ 77 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP---GGYYGGGEYTEEIINAALASDNPYDIVPSRDE 77 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC---ccccCceEEeHHHHHHHHhcCCccccCcCCCC
Confidence 479999999999999999999985 46678888998877654321 1111111111 112233456789
Q ss_pred CCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-----------CCHHHHHHHHHHHHHC----
Q 044745 217 QGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-----------CAETAILGAFDDAIAD---- 281 (753)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-----------~~~~~i~~ai~~a~~~---- 281 (753)
.||||||||||||+..+ ...+.||||+|+|+++|++.. .+ +..++++.||+|+++.
T Consensus 78 ~GHGThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~-~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~ 148 (455)
T cd07478 78 NGHGTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQA-KKYLREFYEDVPFYQETDIMLAIKYLYDKALEL 148 (455)
T ss_pred CCchHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecC-CCcccccccccccCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999643 233499999999999999987 33 5688999999999874
Q ss_pred -CCcEEEeecCCCCCCCCcccHHHHHHHHHhhC-CcEEEEecCCCCCCCCCccCC-CC----c--eEEeecccCccceee
Q 044745 282 -GVDIITISLGGQNTLNFTQDVIAIGSFHAMAK-GVLTLHSAGNSGPFIGSTVSV-AP----W--LMSVAASNTDRLFVD 352 (753)
Q Consensus 282 -gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~-~p----~--vitVga~~~~~~~~~ 352 (753)
.+.|||||||...+++...+++++++..+.++ |++||+||||+|....+.... .+ . -+.|+... ..+.-
T Consensus 149 ~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~--~~~~~ 226 (455)
T cd07478 149 NKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE--KGFNL 226 (455)
T ss_pred CCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC--cceEE
Confidence 46799999999877888889999999887776 999999999999854443321 00 0 12222211 11111
Q ss_pred eEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCC--CCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcC
Q 044745 353 KVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCE--SDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAG 430 (753)
Q Consensus 353 ~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~--~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~G 430 (753)
.+....-..+ ++....+.+...+.+.......... .-.....|. .-..+....|.-.+.-+ ..+ ...|
T Consensus 227 eiW~~~~d~~---~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v---~y~~~~~~~g~~~i~i~---~~~-~~~G 296 (455)
T cd07478 227 EIWGDFPDRF---SVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYV---YYYLPEPYTGDQLIFIR---FKN-IKPG 296 (455)
T ss_pred EEecCCCCEE---EEEEECCCCCccCccCcCCCcceeEEEEECCeEEEE---EEcCCCCCCCCeEEEEE---ccC-CCcc
Confidence 1111000000 0000000010000000000000000 000000000 00001111222111111 001 1112
Q ss_pred ceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEcc--c---eeec-CCCCCceecccCCCCCCCC
Q 044745 431 AEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILS--T---EAVK-DSEAPVVADFSSRGPNEIV 504 (753)
Q Consensus 431 a~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~--~---~~~~-~~~~~~~a~fSs~GP~~~~ 504 (753)
-.-+. ++.....+.....++|...+..++. .++.+.+..+++++. . ++.. +...+.++.||||||+.
T Consensus 297 iW~i~-~~~~~~~~g~~~~Wlp~~~~~~~~t----~f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~-- 369 (455)
T cd07478 297 IWKIR-LTGVSITDGRFDAWLPSRGLLSENT----RFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR-- 369 (455)
T ss_pred ceEEE-EEeccCCCceEEEEecCcCcCCCCC----EeecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC--
Confidence 22222 3333322223455666554443332 344555566666621 1 1222 23345699999999987
Q ss_pred CCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhC------CCCCHHHHHHHHH
Q 044745 505 PDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFH------PDWSPSAIKSAIM 578 (753)
Q Consensus 505 ~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------P~ls~~~ik~~L~ 578 (753)
++++||||+|||++|+++.+.+ .|..++|||||||||||++|||+|++ |.|++++||++|+
T Consensus 370 ~~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~ 436 (455)
T cd07478 370 DGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLI 436 (455)
T ss_pred CCCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHH
Confidence 8999999999999999998864 79999999999999999999999975 5679999999999
Q ss_pred hcCCCCCCCCCCCCCCccCCC
Q 044745 579 TTAWPMNSSKNKDAEFAFGSG 599 (753)
Q Consensus 579 ~TA~~~~~~~~~~~~~~~G~G 599 (753)
+||+++..... .+.+||||
T Consensus 437 ~tA~~~~~~~~--pn~~~GyG 455 (455)
T cd07478 437 RGARRRPGDEY--PNPEWGYG 455 (455)
T ss_pred HhCccCCCCCC--CCCCCCCC
Confidence 99999874433 37899998
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.2e-47 Score=406.11 Aligned_cols=283 Identities=31% Similarity=0.456 Sum_probs=226.9
Q ss_pred ccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCC-------CCCC
Q 044745 138 GLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTD-------DISG 210 (753)
Q Consensus 138 g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~-------~~~~ 210 (753)
|++ .+|+.+++|+||+|||||+|||++||+|.+.- .+ +.++.+.+++.++ ..+.
T Consensus 1 ~v~-~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~-~~-----------------~~~~~~~~d~~~~~~~~~~~~~~~ 61 (312)
T cd07489 1 GVD-KLHAEGITGKGVKVAVVDTGIDYTHPALGGCF-GP-----------------GCKVAGGYDFVGDDYDGTNPPVPD 61 (312)
T ss_pred Chh-hHHhCCCCCCCCEEEEEECCCCCCChhhhcCC-CC-----------------CceeccccccCCcccccccCCCCC
Confidence 455 79999999999999999999999999998641 11 1122233333211 1223
Q ss_pred CCCCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEee
Q 044745 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITIS 289 (753)
Q Consensus 211 ~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~S 289 (753)
..+.|..+|||||||||+|...+ ..+.||||+|+|+.+|++.. .+ ...+.+++++++|++++++|||||
T Consensus 62 ~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~-~~~~~~~~~~~ai~~a~~~~~~iIn~S 131 (312)
T cd07489 62 DDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGC-SGSTTEDTIIAAFLRAYEDGADVITAS 131 (312)
T ss_pred CCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecC-CCCCCHHHHHHHHHHHHhcCCCEEEeC
Confidence 45667899999999999998642 22399999999999999886 44 778889999999999999999999
Q ss_pred cCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCC---CccCCCCceEEeecccCccceeeeEEeCCCeEEeeEE
Q 044745 290 LGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIG---STVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYS 366 (753)
Q Consensus 290 lG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s 366 (753)
||.. ..+..+.+...+.++.++|+++|+||||+|.... ..+...|++|+||+++
T Consensus 132 ~g~~--~~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~--------------------- 188 (312)
T cd07489 132 LGGP--SGWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD--------------------- 188 (312)
T ss_pred CCcC--CCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec---------------------
Confidence 9987 2344577888888899999999999999987542 2244567788887532
Q ss_pred eccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCccccc
Q 044745 367 INSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVS 446 (753)
Q Consensus 367 ~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~ 446 (753)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCC
Q 044745 447 SVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPL 526 (753)
Q Consensus 447 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~ 526 (753)
+.||+|||+. +...||||+|||.+++++++..
T Consensus 189 ----------------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~ 220 (312)
T cd07489 189 ----------------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLA 220 (312)
T ss_pred ----------------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCC
Confidence 4589999987 7889999999999999988765
Q ss_pred CCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhC-CCCCHHHHHHHHHhcCCCCCCCCCCC------CCCccCCC
Q 044745 527 GAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFH-PDWSPSAIKSAIMTTAWPMNSSKNKD------AEFAFGSG 599 (753)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-P~ls~~~ik~~L~~TA~~~~~~~~~~------~~~~~G~G 599 (753)
. +.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++...+... ....+|+|
T Consensus 221 ~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G 289 (312)
T cd07489 221 G-----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAG 289 (312)
T ss_pred C-----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccccCCCCHhhcCcc
Confidence 3 368999999999999999999999999 99999999999999999876643221 24789999
Q ss_pred CCCccccCCCCe
Q 044745 600 HINPVEAVNPGL 611 (753)
Q Consensus 600 ~in~~~Al~~gl 611 (753)
+||+.+|++..-
T Consensus 290 ~vn~~~a~~~~~ 301 (312)
T cd07489 290 LVNAYKALYATT 301 (312)
T ss_pred eeeHHHHhcCCc
Confidence 999999999543
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=3e-46 Score=391.13 Aligned_cols=250 Identities=25% Similarity=0.319 Sum_probs=205.6
Q ss_pred cccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcch
Q 044745 143 ITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTH 222 (753)
Q Consensus 143 ~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGTh 222 (753)
+|..+++|+||+|||||+|||++||+|.+..+.+. ..+.. ......|..+||||
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~-----------------------~~~~~---~~~~~~~~~gHGT~ 55 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL-----------------------FTYAA---AACQDGGASAHGTH 55 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc-----------------------cCccc---cCCCCCCCCCcHHH
Confidence 79999999999999999999999999986422111 01100 11344577899999
Q ss_pred hhcccccCcccccccccccccceeecccccceeccccccCCC-CCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCccc
Q 044745 223 TASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPEL-GCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQD 301 (753)
Q Consensus 223 VAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~-g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~ 301 (753)
|||||+|+.. ..+.||||+|+|+.+|++.... +++..++++||+||+++|++|||||||..........
T Consensus 56 VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~ 125 (267)
T cd07476 56 VASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADP 125 (267)
T ss_pred HHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCH
Confidence 9999998742 1248999999999999987622 2557899999999999999999999997643334456
Q ss_pred HHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEe
Q 044745 302 VIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVD 381 (753)
Q Consensus 302 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~ 381 (753)
.+..++.++.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 126 ~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------------------------- 171 (267)
T cd07476 126 ILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD---------------------------------- 171 (267)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC----------------------------------
Confidence 7788888999999999999999998777777888999999985422
Q ss_pred CCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhH
Q 044745 382 GMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNF 461 (753)
Q Consensus 382 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g 461 (753)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccc
Q 044745 462 NSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKF 541 (753)
Q Consensus 462 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 541 (753)
+.++.||+||+.. .||||+|||.+|+++.+.+ .|
T Consensus 172 ----------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~~-------------~~ 205 (267)
T cd07476 172 ----------------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALGG-------------EV 205 (267)
T ss_pred ----------------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCCC-------------Ce
Confidence 3456799999864 3889999999999987764 68
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCC----CCHHHHHHHHHhcCCCCCCCC
Q 044745 542 NVVSGTSMSCPHAAGVAAYVKSFHPD----WSPSAIKSAIMTTAWPMNSSK 588 (753)
Q Consensus 542 ~~~sGTSmAaP~VAG~aALl~~~~P~----ls~~~ik~~L~~TA~~~~~~~ 588 (753)
..++|||||||||||++|||+|++|. ++|++||++|++||+++...+
T Consensus 206 ~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~~ 256 (267)
T cd07476 206 VRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPEA 256 (267)
T ss_pred EEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCcc
Confidence 99999999999999999999999887 899999999999999987654
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.2e-45 Score=389.83 Aligned_cols=279 Identities=39% Similarity=0.581 Sum_probs=217.3
Q ss_pred CCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCC------------CCCCCCCC
Q 044745 150 ESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDIS------------GNTARDIQ 217 (753)
Q Consensus 150 G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~------------~~~~~D~~ 217 (753)
|+||+|||||+|||++||+|.+..+ .+.++...++|..+... .....|..
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF------------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDAT 62 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC------------------CCCceeeeeECccCCCCcccccccccccccCCCCCCC
Confidence 8999999999999999999985421 13344445555222111 11245689
Q ss_pred CCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCC
Q 044745 218 GHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLN 297 (753)
Q Consensus 218 gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~ 297 (753)
+|||||||+|+|...+ ...+.|+||+|+|+.+|++.....+...+++++|+|+++++++|||||||... .
T Consensus 63 ~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~--~ 132 (295)
T cd07474 63 GHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV--N 132 (295)
T ss_pred CcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--C
Confidence 9999999999998643 22348999999999999998523478899999999999999999999999873 2
Q ss_pred CcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCc--cCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCc
Q 044745 298 FTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGST--VSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGK 375 (753)
Q Consensus 298 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 375 (753)
...+.+..+++++.++|+++|+||||+|...... +...+++|+||++....
T Consensus 133 ~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~--------------------------- 185 (295)
T cd07474 133 GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD--------------------------- 185 (295)
T ss_pred CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC---------------------------
Confidence 2457788888899999999999999998765544 45678999999864110
Q ss_pred eeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEE
Q 044745 376 TFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVA 455 (753)
Q Consensus 376 ~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~ 455 (753)
.
T Consensus 186 ----------------------~--------------------------------------------------------- 186 (295)
T cd07474 186 ----------------------V--------------------------------------------------------- 186 (295)
T ss_pred ----------------------c---------------------------------------------------------
Confidence 0
Q ss_pred eehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCC-CCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCC
Q 044745 456 LNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSR-GPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPE 534 (753)
Q Consensus 456 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~-GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 534 (753)
........|+++ |++. ...+||||+|||.+|++++....
T Consensus 187 -------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~~------- 226 (295)
T cd07474 187 -------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGSG------- 226 (295)
T ss_pred -------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCCC-------
Confidence 001233445555 4543 78899999999999999887631
Q ss_pred CcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCC-CCCccCCCCCCcccc
Q 044745 535 DKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKD-AEFAFGSGHINPVEA 606 (753)
Q Consensus 535 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~-~~~~~G~G~in~~~A 606 (753)
..|..++|||||||+|||++|||+|++|+|++++||++|++||++....+... .+..+|+|+||+.+|
T Consensus 227 ----~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 227 ----TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred ----CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCCCcCChhccCcceeccccC
Confidence 46899999999999999999999999999999999999999999987754321 247899999999987
No 11
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.2e-45 Score=378.09 Aligned_cols=235 Identities=27% Similarity=0.393 Sum_probs=193.6
Q ss_pred cEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCcc
Q 044745 153 IIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEV 232 (753)
Q Consensus 153 V~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~~ 232 (753)
|+|||||||||.+||+|.+.- +...++.. ....|..+|||||||||+|...
T Consensus 1 V~VavIDsGvd~~hp~l~~~~------------------------~~~~~~~~-----~~~~~~~~HGT~vAgiia~~~~ 51 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV------------------------IARLFFAG-----PGAPAPSAHGTAVASLLAGAGA 51 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc------------------------cccccCCC-----CCCCCCCCCHHHHHHHHhCCCC
Confidence 789999999999999997541 11111111 1355789999999999999852
Q ss_pred cccccccccccceeecccccceeccccccCCC---CCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHHHHH
Q 044745 233 KDASFFGVGQGTARGGVPSARIAAYKVCSPEL---GCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFH 309 (753)
Q Consensus 233 ~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~---g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~ 309 (753)
. . .|+||+|+|+.+|++.... .++..++++||+||++.|++|||||||.. ....++.++.+
T Consensus 52 ~----------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~-----~~~~l~~ai~~ 115 (239)
T cd05561 52 Q----------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGP-----PNALLAAAVAA 115 (239)
T ss_pred C----------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC-----CCHHHHHHHHH
Confidence 1 1 7999999999999987621 26788999999999999999999999975 23567788889
Q ss_pred HhhCCcEEEEecCCCCCCC-CCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCC
Q 044745 310 AMAKGVLTLHSAGNSGPFI-GSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRP 388 (753)
Q Consensus 310 a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~ 388 (753)
+.++|++||+||||+|... ..++...|++|+|++++.+
T Consensus 116 a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~----------------------------------------- 154 (239)
T cd05561 116 AAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR----------------------------------------- 154 (239)
T ss_pred HHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC-----------------------------------------
Confidence 9999999999999999753 3456677899999875422
Q ss_pred CCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHH
Q 044745 389 CESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYL 468 (753)
Q Consensus 389 ~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 468 (753)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeecccc
Q 044745 469 KSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTS 548 (753)
Q Consensus 469 ~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 548 (753)
+.++.||++|+.. ||.|||.+|+++.+.+ .|..++|||
T Consensus 155 ---------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~-------------~~~~~sGTS 192 (239)
T cd05561 155 ---------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPGG-------------GYRYVSGTS 192 (239)
T ss_pred ---------------------CCccccCCCCCcc--------eEEccccceecccCCC-------------CEEEeCCHH
Confidence 3457799999976 9999999999876553 689999999
Q ss_pred chhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCC
Q 044745 549 MSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSG 599 (753)
Q Consensus 549 mAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G 599 (753)
||||||||++|||+|++| ++++|||++|++||+++...+. +..||||
T Consensus 193 ~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~~~---d~~~G~G 239 (239)
T cd05561 193 FAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPPGR---DPVFGYG 239 (239)
T ss_pred HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCCCc---CCCcCCC
Confidence 999999999999999999 9999999999999998877653 6789998
No 12
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=8e-45 Score=386.13 Aligned_cols=255 Identities=27% Similarity=0.394 Sum_probs=186.7
Q ss_pred CCcEEEEEecCCCCCCCCccCCCCCCCCcccccccc--------C---------CCccc---cCcceeeeeecCCC----
Q 044745 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACK--------G---------GRNFT---CNNKIIGARYYTTD---- 206 (753)
Q Consensus 151 ~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~--------~---------~~~f~---~n~kl~g~~~~~g~---- 206 (753)
++|+|||||||||++||+|++. .|....+ . |.+|. ..+++++...+...
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~ 73 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGY 73 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccc
Confidence 6899999999999999999864 3322111 1 12221 11112111111000
Q ss_pred -CCCCCCCCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcE
Q 044745 207 -DISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDI 285 (753)
Q Consensus 207 -~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdV 285 (753)
+.+...+.+..+|||||||||++...++. | +.||||+|+|+.+|++.. ......++++||+||++.|++|
T Consensus 74 g~~~~~~~~~~~gHGT~VAGiIaa~~~n~~---g-----~~GvAp~a~i~~~k~~~~-g~~~~~~i~~Ai~~a~~~g~~I 144 (291)
T cd07483 74 GNNDVNGPISDADHGTHVAGIIAAVRDNGI---G-----IDGVADNVKIMPLRIVPN-GDERDKDIANAIRYAVDNGAKV 144 (291)
T ss_pred cccccCCCCCCCCcHHHHHHHHhCcCCCCC---c-----eEEECCCCEEEEEEEecC-CCcCHHHHHHHHHHHHHCCCcE
Confidence 01223455789999999999999864321 2 389999999999999865 4467789999999999999999
Q ss_pred EEeecCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCc---c--------CCCCceEEeecccCccceeeeE
Q 044745 286 ITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGST---V--------SVAPWLMSVAASNTDRLFVDKV 354 (753)
Q Consensus 286 In~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---~--------~~~p~vitVga~~~~~~~~~~~ 354 (753)
||||||... ......+..++..+.++|+++|+||||+|...... + ...+++|+||++....
T Consensus 145 iN~S~G~~~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~------ 216 (291)
T cd07483 145 INMSFGKSF--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY------ 216 (291)
T ss_pred EEeCCCCCC--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC------
Confidence 999999762 22334567778888999999999999998643211 1 1235566666543210
Q ss_pred EeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEE
Q 044745 355 VLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGS 434 (753)
Q Consensus 355 ~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~ 434 (753)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceee
Q 044745 435 VSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISA 514 (753)
Q Consensus 435 i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~A 514 (753)
....++.||++|+. +|||.|
T Consensus 217 -----------------------------------------------------~~~~~~~~Sn~G~~-------~vdi~A 236 (291)
T cd07483 217 -----------------------------------------------------ENNLVANFSNYGKK-------NVDVFA 236 (291)
T ss_pred -----------------------------------------------------CcccccccCCCCCC-------ceEEEe
Confidence 01246889999974 459999
Q ss_pred CCccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 515 PGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 515 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
||.+|+++.+.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 237 PG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 237 PGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred CCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999987653 6899999999999999999999999999999999999999984
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-44 Score=377.37 Aligned_cols=245 Identities=31% Similarity=0.378 Sum_probs=195.7
Q ss_pred CcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCc
Q 044745 152 DIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNE 231 (753)
Q Consensus 152 GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~ 231 (753)
||+|||||||||++||+|..... ..+.++.+.++|..+... ...|..+|||||||||+|..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~-----------------~~~~~i~~~~~~~~~~~~--~~~~~~~HGT~vagiia~~~ 61 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL-----------------FKNLRILGEYDFVDNSNN--TNYTDDDHGTAVLSTMAGYT 61 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc-----------------ccCCceeeeecCccCCCC--CCCCCCCchhhhheeeeeCC
Confidence 79999999999999999952210 013466777777433211 13678999999999999984
Q ss_pred ccccccccccccceeecccccceeccccccCCC-C-CCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCC-----------
Q 044745 232 VKDASFFGVGQGTARGGVPSARIAAYKVCSPEL-G-CAETAILGAFDDAIADGVDIITISLGGQNTLNF----------- 298 (753)
Q Consensus 232 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~-g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~----------- 298 (753)
.+.+.||||+|+|+.+|+..... . .....++++++|+.+.+++|||||||.......
T Consensus 62 ----------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~ 131 (261)
T cd07493 62 ----------PGVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDG 131 (261)
T ss_pred ----------CCCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccc
Confidence 23359999999999999865411 1 456678999999999999999999998732111
Q ss_pred cccHHHHHHHHHhhCCcEEEEecCCCCCCC---CCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCc
Q 044745 299 TQDVIAIGSFHAMAKGVLTLHSAGNSGPFI---GSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGK 375 (753)
Q Consensus 299 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 375 (753)
....+.++++.+.++|+++|+||||+|... ...+...|++|+|||.+.+
T Consensus 132 ~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~---------------------------- 183 (261)
T cd07493 132 KTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN---------------------------- 183 (261)
T ss_pred cchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC----------------------------
Confidence 124577788889999999999999999773 4456678999999975322
Q ss_pred eeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEE
Q 044745 376 TFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVA 455 (753)
Q Consensus 376 ~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~ 455 (753)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCC
Q 044745 456 LNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPED 535 (753)
Q Consensus 456 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 535 (753)
+.++.||++||+. ++++||||+|||.++++....
T Consensus 184 ----------------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~---------- 217 (261)
T cd07493 184 ----------------------------------GNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD---------- 217 (261)
T ss_pred ----------------------------------CCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC----------
Confidence 3567899999986 899999999999999875433
Q ss_pred cccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 536 KRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 536 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
..|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 218 ---~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 218 ---GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred ---CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 36899999999999999999999999999999999999999985
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=3.1e-44 Score=377.28 Aligned_cols=247 Identities=32% Similarity=0.407 Sum_probs=195.5
Q ss_pred CCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhccccc
Q 044745 150 ESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASG 229 (753)
Q Consensus 150 G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag 229 (753)
|+||+|||||+|||++||+|.+. |++..... +...+.+.+.......+.|..+|||||||||+|
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~~--------~~~~~~~~d~~~~~~~~~d~~~HGT~vagii~g 64 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGGS--------ADHDYNWFDPVGNTPLPYDDNGHGTHTMGTMVG 64 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCCC--------cccccccccCCCCCCCCCCCCCchhhhhhheee
Confidence 89999999999999999999864 11111000 000011101111124567889999999999998
Q ss_pred CcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHH------------CCCcEEEeecCCCCCCC
Q 044745 230 NEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIA------------DGVDIITISLGGQNTLN 297 (753)
Q Consensus 230 ~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~------------~gvdVIn~SlG~~~~~~ 297 (753)
... .+...||||+|+|+.+|++.. .++...+++++++++++ .+++|||||||....
T Consensus 65 ~~~---------~~~~~GvAp~a~i~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~-- 132 (264)
T cd07481 65 NDG---------DGQQIGVAPGARWIACRALDR-NGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG-- 132 (264)
T ss_pred cCC---------CCCceEECCCCeEEEEEeecC-CCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC--
Confidence 752 222389999999999999987 66888899999999975 789999999998732
Q ss_pred CcccHHHHHHHHHhhCCcEEEEecCCCCCCCCC---ccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCC
Q 044745 298 FTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS---TVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKG 374 (753)
Q Consensus 298 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 374 (753)
....+..++..+.++|++||+||||+|..... .+...|++|+||+++.+
T Consensus 133 -~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~--------------------------- 184 (264)
T cd07481 133 -DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN--------------------------- 184 (264)
T ss_pred -CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC---------------------------
Confidence 33456667777889999999999999865432 45677899999975422
Q ss_pred ceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEE
Q 044745 375 KTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAV 454 (753)
Q Consensus 375 ~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~ 454 (753)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCC
Q 044745 455 ALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPE 534 (753)
Q Consensus 455 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 534 (753)
+.++.||++||.. .+++||||+|||.+|+++.+.+
T Consensus 185 -----------------------------------~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~~-------- 219 (264)
T cd07481 185 -----------------------------------DVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPGG-------- 219 (264)
T ss_pred -----------------------------------CCCccccCCCCCC--CCCcCceEEECCCCeEEecCCC--------
Confidence 4567899999987 7899999999999999988763
Q ss_pred CcccccceeeccccchhHHHHHHHHHHHhhCCC--CCHHHHHHHHHhcCC
Q 044745 535 DKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPD--WSPSAIKSAIMTTAW 582 (753)
Q Consensus 535 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~--ls~~~ik~~L~~TA~ 582 (753)
.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 220 -----~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 220 -----GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred -----ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 6899999999999999999999999999 999999999999985
No 15
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=6.8e-44 Score=386.61 Aligned_cols=221 Identities=28% Similarity=0.338 Sum_probs=166.9
Q ss_pred CCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC--CCHHHHHHHHHHHHHCCCcEEEeecC
Q 044745 214 RDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG--CAETAILGAFDDAIADGVDIITISLG 291 (753)
Q Consensus 214 ~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~gvdVIn~SlG 291 (753)
.|+.+|||||||||||+..+ ...+.||||+|+|+.+|+++...+ +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 47889999999999998532 233499999999999999875223 34467999999999999999999999
Q ss_pred CCCCCCCcccHHHHHHHH-HhhCCcEEEEecCCCCCCCCCccC---CCCceEEeecccCccceeeeEEeCCCeEEeeEEe
Q 044745 292 GQNTLNFTQDVIAIGSFH-AMAKGVLTLHSAGNSGPFIGSTVS---VAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSI 367 (753)
Q Consensus 292 ~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~---~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~ 367 (753)
.....+ ....+..++.+ +.++|+++|+||||+|+...++.. ..+++|+|||+.....+....
T Consensus 254 ~~~~~~-~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y------------- 319 (412)
T cd04857 254 EATHWP-NSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEY------------- 319 (412)
T ss_pred cCCCCc-cchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccc-------------
Confidence 873212 12234344443 457899999999999987666532 468999999864321000000
Q ss_pred ccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccc
Q 044745 368 NSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSS 447 (753)
Q Consensus 368 ~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~ 447 (753)
. +.
T Consensus 320 ------------------------------~--------------------------------------~~--------- 322 (412)
T cd04857 320 ------------------------------S--------------------------------------LR--------- 322 (412)
T ss_pred ------------------------------c--------------------------------------cc---------
Confidence 0 00
Q ss_pred cccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCC
Q 044745 448 VVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLG 527 (753)
Q Consensus 448 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~ 527 (753)
....+.++.||||||+. +|.+||||+|||+.|.+.-....
T Consensus 323 --------------------------------------~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~~ 362 (412)
T cd04857 323 --------------------------------------EKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWTL 362 (412)
T ss_pred --------------------------------------cccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCCC
Confidence 00125688999999997 99999999999999987522211
Q ss_pred CCCCCCCCcccccceeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCCCC
Q 044745 528 AVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKS----FHPDWSPSAIKSAIMTTAWPM 584 (753)
Q Consensus 528 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~ls~~~ik~~L~~TA~~~ 584 (753)
..|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 363 -----------~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 363 -----------QGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred -----------CCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 3689999999999999999999985 468999999999999999864
No 16
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-45 Score=377.42 Aligned_cols=325 Identities=23% Similarity=0.298 Sum_probs=256.5
Q ss_pred cccCceEEEEecccCCCCCcchhhHHHHHHHHhCCCCc------cc-------------eEEEEec---ceeeEEEEEeC
Q 044745 47 LNFLMVHIVYLGSLFRGEYETSSQHQSILQEVIGDSSV------EN-------------VLVRSYK---RSFNGFAAKLT 104 (753)
Q Consensus 47 ~~~~~~yIV~l~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~-------------~v~~~y~---~~~~g~s~~~~ 104 (753)
+..+.+|||.|++... .+..+.|.++++........ .. .+.+.|. .+|+|+.-.++
T Consensus 77 ~~~~~~YiV~f~~~~~--q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft 154 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDAS--QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFT 154 (501)
T ss_pred cccccceEEEeCCCcc--HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccc
Confidence 5568999999996554 66677788888887751110 00 1444443 37888889999
Q ss_pred HHHHHHhhcCCCeEEEEeCceecccc--------CCCcccccccc------cccc----CCCCCCCcEEEEEecCCCCCC
Q 044745 105 DHERQKLASMEGVVSVFPSRTLQLHT--------TRSWDFMGLNQ------SITR----KRSVESDIIVGVIDSGIWPES 166 (753)
Q Consensus 105 ~~~~~~L~~~p~V~~v~~~~~~~~~~--------~~s~~~~g~~~------~~~~----~~~~G~GV~VaVIDtGid~~H 166 (753)
.+-+..++++|-++.++++..+.... ...|.+..+.. ..|. ....|+||...|+||||+.+|
T Consensus 155 ~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H 234 (501)
T KOG1153|consen 155 GESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEH 234 (501)
T ss_pred cceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccc
Confidence 99999999999999999988766443 22233222221 1122 234899999999999999999
Q ss_pred CCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCccccccccccccccee
Q 044745 167 ESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTAR 246 (753)
Q Consensus 167 p~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~ 246 (753)
|+|.++ ++|-. | ...+ ....|++||||||||+|++.. .
T Consensus 235 ~dFegR------a~wGa-~----------------i~~~-----~~~~D~nGHGTH~AG~I~sKt--------------~ 272 (501)
T KOG1153|consen 235 PDFEGR------AIWGA-T----------------IPPK-----DGDEDCNGHGTHVAGLIGSKT--------------F 272 (501)
T ss_pred cccccc------eeccc-c----------------cCCC-----CcccccCCCcceeeeeeeccc--------------c
Confidence 999976 34411 1 1101 234689999999999999986 8
Q ss_pred ecccccceeccccccCCCC-CCHHHHHHHHHHHHHC---------CCcEEEeecCCCCCCCCcccHHHHHHHHHhhCCcE
Q 044745 247 GGVPSARIAAYKVCSPELG-CAETAILGAFDDAIAD---------GVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVL 316 (753)
Q Consensus 247 GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~---------gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~ 316 (753)
|||.+++|+++||+++ +| +..+++++++|++++. +..|.|||+|+. ..-.+..|+++|.+.|++
T Consensus 273 GvAK~s~lvaVKVl~~-dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~-----~S~aLn~AV~~A~~~Gi~ 346 (501)
T KOG1153|consen 273 GVAKNSNLVAVKVLRS-DGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF-----RSAALNMAVNAASERGIH 346 (501)
T ss_pred ccccccceEEEEEecc-CCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc-----ccHHHHHHHHHHhhcCeE
Confidence 9999999999999999 66 9999999999999986 468999999998 334778888999999999
Q ss_pred EEEecCCCCCCCCCc-cCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCC
Q 044745 317 TLHSAGNSGPFIGST-VSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDP 395 (753)
Q Consensus 317 vV~AAGN~G~~~~~~-~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~ 395 (753)
+++||||+..+.+.. +..+..+|||||++..
T Consensus 347 fa~AAGNe~eDAC~~SPass~~aITVGAst~~------------------------------------------------ 378 (501)
T KOG1153|consen 347 FAVAAGNEHEDACNSSPASSKKAITVGASTKN------------------------------------------------ 378 (501)
T ss_pred EEEcCCCcchhhhccCcccccccEEecccccc------------------------------------------------
Confidence 999999999887655 4578899999997533
Q ss_pred CCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCe
Q 044745 396 QLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPE 475 (753)
Q Consensus 396 ~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~ 475 (753)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHH
Q 044745 476 ANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAA 555 (753)
Q Consensus 476 ~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 555 (753)
+.+|.|||||+|+ ||.|||++|+|+|.++. ....++||||||+||||
T Consensus 379 --------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~-----------~at~ilSGTSMasPhva 425 (501)
T KOG1153|consen 379 --------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN-----------NATAILSGTSMASPHVA 425 (501)
T ss_pred --------------cchhhhcCcccee--------eeecCchhhhhhhhcCc-----------cchheeecccccCcchh
Confidence 6789999999999 99999999999998874 46789999999999999
Q ss_pred HHHHHHHhhCCC---------CCHHHHHHHHHhcCC
Q 044745 556 GVAAYVKSFHPD---------WSPSAIKSAIMTTAW 582 (753)
Q Consensus 556 G~aALl~~~~P~---------ls~~~ik~~L~~TA~ 582 (753)
|++|..++++|. .||.++|..++.-..
T Consensus 426 G~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 426 GLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 999999999883 388999888876554
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-43 Score=372.94 Aligned_cols=257 Identities=28% Similarity=0.439 Sum_probs=205.9
Q ss_pred CCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhccccc
Q 044745 150 ESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASG 229 (753)
Q Consensus 150 G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag 229 (753)
|+||+|+|||+||+++||+|.+.... ...+...........|..+|||||||+|+|
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~------------------------~~~~~~~~~~~~~~~d~~~HGT~vAgiiag 56 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR------------------------FADFVNTVNGRTTPYDDNGHGTHVAGIIAG 56 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc------------------------cccccccccCCCCCCCCCCchHHHHHHHhc
Confidence 89999999999999999999864210 111111001224566788999999999999
Q ss_pred CcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHC----CCcEEEeecCCCCCCCCcccHHH
Q 044745 230 NEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIAD----GVDIITISLGGQNTLNFTQDVIA 304 (753)
Q Consensus 230 ~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~----gvdVIn~SlG~~~~~~~~~~~~~ 304 (753)
...+. .+.+.||||+|+|+.+|+++. .+ ...+++++||+|+++. +++|||||||.........+.+.
T Consensus 57 ~~~~~-------~~~~~Giap~a~i~~~~v~~~-~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~ 128 (264)
T cd07487 57 SGRAS-------NGKYKGVAPGANLVGVKVLDD-SGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLC 128 (264)
T ss_pred CCccc-------CCceEEECCCCeEEEEEeecC-CCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHH
Confidence 86431 233599999999999999987 55 7788999999999998 99999999998854455678889
Q ss_pred HHHHHHhhCCcEEEEecCCCCCCCC--CccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeC
Q 044745 305 IGSFHAMAKGVLTLHSAGNSGPFIG--STVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDG 382 (753)
Q Consensus 305 ~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~ 382 (753)
.+++++.++|++||+||||++.... ..+...+++|+||+++.+..
T Consensus 129 ~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------------------------- 175 (264)
T cd07487 129 QAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------------------------- 175 (264)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------------------------
Confidence 9999999999999999999998765 45567899999998654310
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHH
Q 044745 383 MDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFN 462 (753)
Q Consensus 383 ~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~ 462 (753)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccce
Q 044745 463 SIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFN 542 (753)
Q Consensus 463 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 542 (753)
....++.||++||+. ++++||||+|||.+|+++.+.... ........|.
T Consensus 176 -------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~----~~~~~~~~~~ 224 (264)
T cd07487 176 -------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGN----PGAGVGSGYF 224 (264)
T ss_pred -------------------------CCccccccccCCCCC--CCCcCCCEEccccceEeccccccc----cCCCCCCceE
Confidence 002367899999987 899999999999999998654311 0112235789
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 543 VVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 543 ~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
.++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 225 ~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 225 EMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred eccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999985
No 18
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=3.5e-43 Score=371.04 Aligned_cols=263 Identities=27% Similarity=0.345 Sum_probs=200.5
Q ss_pred ccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecC-CCCCCCCCCCCCCCCc
Q 044745 142 SITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYT-TDDISGNTARDIQGHG 220 (753)
Q Consensus 142 ~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~-g~~~~~~~~~D~~gHG 220 (753)
.+|..+++|+||+|+|||||||++||+|.+..... +.. .....+.+. ..........|..+||
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-----------~~~-----~~~~~~~~~~~~~~~~~~~~~~~gHG 64 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-----------GYD-----PAVNGYNFVPNVGDIDNDVSVGGGHG 64 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-----------Ccc-----cccCCcccccccCCcCCCCCCCCCCH
Confidence 47999999999999999999999999999751110 000 000000110 0001123455788999
Q ss_pred chhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcc
Q 044745 221 THTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQ 300 (753)
Q Consensus 221 ThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~ 300 (753)
|||||||+|...+....-|.. .+.|+||+|+|+.+|++.....+....++++|+|+++.|++|||||||... .....
T Consensus 65 T~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~-~~~~~ 141 (273)
T cd07485 65 THVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTG-GGIYS 141 (273)
T ss_pred HHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCC-ccccC
Confidence 999999999764322211111 236799999999999998733377888999999999999999999999873 23344
Q ss_pred cHHHHHHHHHhhC-------CcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCC
Q 044745 301 DVIAIGSFHAMAK-------GVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSK 373 (753)
Q Consensus 301 ~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~ 373 (753)
..+..++..+.++ |++||+||||+|......+...|++|+||+++.+
T Consensus 142 ~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~-------------------------- 195 (273)
T cd07485 142 PLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN-------------------------- 195 (273)
T ss_pred HHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC--------------------------
Confidence 5667777777777 9999999999998877667788999999985432
Q ss_pred CceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccE
Q 044745 374 GKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPA 453 (753)
Q Consensus 374 ~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~ 453 (753)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCc-cEEeccCCCCCCCCC
Q 044745 454 VALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGV-DILAAFSPLGAVSDD 532 (753)
Q Consensus 454 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~-~I~sa~~~~~~~~~~ 532 (753)
+.++.||++|+.. ||.|||. .|+++.+....
T Consensus 196 ------------------------------------~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~---- 227 (273)
T cd07485 196 ------------------------------------DNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG---- 227 (273)
T ss_pred ------------------------------------CCcCccccCCCce--------EEEeCCCCccccccccccC----
Confidence 4467899999987 9999999 88887765421
Q ss_pred CCCcccccceeeccccchhHHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 044745 533 PEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPD-WSPSAIKSAIMTT 580 (753)
Q Consensus 533 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~-ls~~~ik~~L~~T 580 (753)
.....|..++|||||||+|||++|||+|++|. |+++|||++|++|
T Consensus 228 ---~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 228 ---DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred ---CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 11247899999999999999999999999999 9999999999986
No 19
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.1e-42 Score=366.24 Aligned_cols=256 Identities=24% Similarity=0.331 Sum_probs=189.0
Q ss_pred cccccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCC
Q 044745 135 DFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTAR 214 (753)
Q Consensus 135 ~~~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~ 214 (753)
+.++++ .+|+++++|+||+||||||||+..|| |...++.. + ..+... ......
T Consensus 6 ~~l~~~-~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~~-------------------~----~~~~~~--~~~~~~ 58 (298)
T cd07494 6 ALLNAT-RVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQV-------------------R----VVLAPG--ATDPAC 58 (298)
T ss_pred hhcChh-HHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCccc-------------------e----eecCCC--CCCCCC
Confidence 356777 89999999999999999999999998 76442210 0 001100 113456
Q ss_pred CCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCC
Q 044745 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQN 294 (753)
Q Consensus 215 D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~ 294 (753)
|+.|||||||+++ .||||+|+|+.+|+++. ..+++++||+||++++++|||||||...
T Consensus 59 D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~----~~~~~~~ai~~a~~~g~dVIn~SlG~~~ 116 (298)
T cd07494 59 DENGHGTGESANL------------------FAIAPGAQFIGVKLGGP----DLVNSVGAFKKAISLSPDIISNSWGYDL 116 (298)
T ss_pred CCCCcchheeece------------------eEeCCCCeEEEEEccCC----CcHHHHHHHHHHHhcCCCEEEeecccCC
Confidence 7889999999865 78999999999999754 4567899999999999999999999863
Q ss_pred CCCC---------cccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeE
Q 044745 295 TLNF---------TQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGY 365 (753)
Q Consensus 295 ~~~~---------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~ 365 (753)
.... ....++.++.+|.++|++||+||||++. .++...|++|+||+++.+.. +
T Consensus 117 ~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g------ 178 (298)
T cd07494 117 RSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------G------ 178 (298)
T ss_pred CCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------C------
Confidence 2111 1345778888899999999999999974 46888999999999754320 0
Q ss_pred EeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccc
Q 044745 366 SINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKV 445 (753)
Q Consensus 366 s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~ 445 (753)
T Consensus 179 -------------------------------------------------------------------------------- 178 (298)
T cd07494 179 -------------------------------------------------------------------------------- 178 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceeccc--CCCCCCCCCCCCCCce-----------
Q 044745 446 SSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFS--SRGPNEIVPDILKPDI----------- 512 (753)
Q Consensus 446 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fS--s~GP~~~~~~~~KPDI----------- 512 (753)
.....++ ++... ..+++.|||+
T Consensus 179 --------------------------------------------~~~~~~~~~~~~s~-~~~g~~~pd~~~~~g~~~~~~ 213 (298)
T cd07494 179 --------------------------------------------ARRASSYASGFRSK-IYPGRQVPDVCGLVGMLPHAA 213 (298)
T ss_pred --------------------------------------------cccccccccCcccc-cCCCCccCccccccCcCCccc
Confidence 0000111 11111 1256677776
Q ss_pred -----eeCCccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCC
Q 044745 513 -----SAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSS 587 (753)
Q Consensus 513 -----~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~ 587 (753)
+|||..|.++...... .......|..++|||||||||||++|||+|++|.|+++|||.+|++||+++...
T Consensus 214 ~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~~ 288 (298)
T cd07494 214 YLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTKG 288 (298)
T ss_pred ccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCC
Confidence 4799998765432100 011125799999999999999999999999999999999999999999988664
No 20
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=2.4e-42 Score=361.23 Aligned_cols=232 Identities=32% Similarity=0.441 Sum_probs=195.6
Q ss_pred cccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcch
Q 044745 143 ITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTH 222 (753)
Q Consensus 143 ~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGTh 222 (753)
.|..+++|+||+|||||+||+++||+|.++ +...+.+... ....|..+||||
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~------------------------~~~~~~~~~~----~~~~d~~~HGT~ 68 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR------------------------AIWGADFVGG----DPDSDCNGHGTH 68 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC------------------------eeeeeecCCC----CCCCCCCccHHH
Confidence 677789999999999999999999999853 2222333221 225678999999
Q ss_pred hhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHC-----CCcEEEeecCCCCCC
Q 044745 223 TASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIAD-----GVDIITISLGGQNTL 296 (753)
Q Consensus 223 VAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~-----gvdVIn~SlG~~~~~ 296 (753)
|||||++.. .||||+|+|+.+|+++. .+ ...+.++++++++++. +++|||||||...
T Consensus 69 vAgiia~~~--------------~GvAp~a~i~~~~i~~~-~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~-- 131 (255)
T cd04077 69 VAGTVGGKT--------------YGVAKKANLVAVKVLDC-NGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA-- 131 (255)
T ss_pred HHHHHHccc--------------cCcCCCCeEEEEEEeCC-CCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC--
Confidence 999999874 79999999999999988 54 7788999999999987 4899999999872
Q ss_pred CCcccHHHHHHHHHhhCCcEEEEecCCCCCCC-CCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCc
Q 044745 297 NFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFI-GSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGK 375 (753)
Q Consensus 297 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 375 (753)
...+..++.++.++|+++|+||||+|... ...+...|++|+||+.+.+
T Consensus 132 ---~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~---------------------------- 180 (255)
T cd04077 132 ---STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD---------------------------- 180 (255)
T ss_pred ---CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC----------------------------
Confidence 45677778889999999999999999765 3456678999999986532
Q ss_pred eeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEE
Q 044745 376 TFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVA 455 (753)
Q Consensus 376 ~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~ 455 (753)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCC
Q 044745 456 LNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPED 535 (753)
Q Consensus 456 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 535 (753)
+..+.||++||+. ||+|||.+|.++.....
T Consensus 181 ----------------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~~-------- 210 (255)
T cd04077 181 ----------------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIGSD-------- 210 (255)
T ss_pred ----------------------------------CCccCcccCCCCC--------cEEeCCCCeEecccCCC--------
Confidence 3467899999987 99999999998876432
Q ss_pred cccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCC
Q 044745 536 KRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWP 583 (753)
Q Consensus 536 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~ 583 (753)
..|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 211 ---~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 211 ---TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred ---CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 478999999999999999999999999999999999999999975
No 21
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=3e-42 Score=361.68 Aligned_cols=246 Identities=30% Similarity=0.367 Sum_probs=204.7
Q ss_pred cccccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCC
Q 044745 135 DFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTAR 214 (753)
Q Consensus 135 ~~~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~ 214 (753)
..++++ .+|..+ +|+||+|+|||+||+++||+|... ++...+++... ...+.
T Consensus 14 ~~~~~~-~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-----------------------~~~~~~~~~~~---~~~~~ 65 (260)
T cd07484 14 DQIGAP-KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-----------------------KFVLGYDFVDN---DSDAM 65 (260)
T ss_pred cccChH-HHHhhc-CCCCCEEEEEeCCCCCCCcccccC-----------------------CcccceeccCC---CCCCC
Confidence 345666 899988 999999999999999999998532 23333344221 13366
Q ss_pred CCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCC
Q 044745 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQN 294 (753)
Q Consensus 215 D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~ 294 (753)
|..+|||||||||++...+ ...+.|+||+|+|+.+|+++....+...+++++|+++++.+++|||||||...
T Consensus 66 d~~~HGT~vagii~~~~~~--------~~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~ 137 (260)
T cd07484 66 DDNGHGTHVAGIIAAATNN--------GTGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL 137 (260)
T ss_pred CCCCcHHHHHHHHhCccCC--------CCceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC
Confidence 7899999999999987532 12248999999999999998723378889999999999999999999999873
Q ss_pred CCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCC
Q 044745 295 TLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKG 374 (753)
Q Consensus 295 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 374 (753)
....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 138 ----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~--------------------------- 186 (260)
T cd07484 138 ----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD--------------------------- 186 (260)
T ss_pred ----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC---------------------------
Confidence 3456777778888999999999999999888888899999999985432
Q ss_pred ceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEE
Q 044745 375 KTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAV 454 (753)
Q Consensus 375 ~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~ 454 (753)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCC
Q 044745 455 ALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPE 534 (753)
Q Consensus 455 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 534 (753)
+..+.||++|+.. |++|||.+|++..+..
T Consensus 187 -----------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~~-------- 215 (260)
T cd07484 187 -----------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPDG-------- 215 (260)
T ss_pred -----------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCCC--------
Confidence 3456789999876 9999999999887653
Q ss_pred CcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCC
Q 044745 535 DKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPM 584 (753)
Q Consensus 535 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~ 584 (753)
.|..++|||||||+|||++||+++++| |++++||++|++||+++
T Consensus 216 -----~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 216 -----DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred -----CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 689999999999999999999999999 99999999999999876
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4e-42 Score=359.48 Aligned_cols=252 Identities=29% Similarity=0.401 Sum_probs=189.3
Q ss_pred CcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCC-CCCCCCCCCCCCCcchhhcccccC
Q 044745 152 DIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTD-DISGNTARDIQGHGTHTASTASGN 230 (753)
Q Consensus 152 GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~-~~~~~~~~D~~gHGThVAGiiag~ 230 (753)
||+|||||+|||++||+|.+. +....+|..+ ........|..+|||||||||+|+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~------------------------~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~ 56 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR------------------------VAQWADFDENRRISATEVFDAGGHGTHVSGTIGGG 56 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc------------------------cCCceeccCCCCCCCCCCCCCCCcHHHHHHHHhcC
Confidence 799999999999999999854 1111222111 112234567889999999999998
Q ss_pred cccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHHHHHH
Q 044745 231 EVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHA 310 (753)
Q Consensus 231 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a 310 (753)
.. ++.+.||||+|+|+.+|++.. .++..++++++|+|+++.+++|||||||..... .+.+..+++.+
T Consensus 57 ~~---------~~~~~GvAp~a~i~~~~v~~~-~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~~~~~~~~~~~ 123 (254)
T cd07490 57 GA---------KGVYIGVAPEADLLHGKVLDD-GGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---EDPLEEAVEAL 123 (254)
T ss_pred CC---------CCCEEEECCCCEEEEEEEecC-CCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---CcHHHHHHHHH
Confidence 63 233489999999999999987 558889999999999999999999999987322 56666666555
Q ss_pred hh-CCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCC
Q 044745 311 MA-KGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPC 389 (753)
Q Consensus 311 ~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~ 389 (753)
.+ +|++||+||||+|......+...|++|+|||++.+.........
T Consensus 124 ~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~--------------------------------- 170 (254)
T cd07490 124 SNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF--------------------------------- 170 (254)
T ss_pred HHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC---------------------------------
Confidence 54 69999999999998877777788999999997644210000000
Q ss_pred CCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHh
Q 044745 390 ESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLK 469 (753)
Q Consensus 390 ~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 469 (753)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeeccccc
Q 044745 470 STKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSM 549 (753)
Q Consensus 470 ~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSm 549 (753)
........+.+|.. .....|||+.|||.+|+++.... .....|..++||||
T Consensus 171 -------------------g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~ 221 (254)
T cd07490 171 -------------------GSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSM 221 (254)
T ss_pred -------------------cccccccccCCCCC-ccCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHH
Confidence 00111223334432 35678999999999999865221 11247899999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 550 SCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 550 AaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
|||+|||++|||+|++|+|++.+||++|++||+
T Consensus 222 AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 222 AAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999984
No 23
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-42 Score=370.16 Aligned_cols=263 Identities=25% Similarity=0.254 Sum_probs=187.5
Q ss_pred EEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCccc
Q 044745 154 IVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEVK 233 (753)
Q Consensus 154 ~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~~~ 233 (753)
+|||||||||.+||+|.+. +.....+... .....|..||||||||||++....
T Consensus 2 ~VaviDtGi~~~hp~l~~~------------------------~~~~~~~~~~---~~~~~d~~gHGT~vAgiia~~~~~ 54 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPA------------------------LAEDDLDSDE---PGWTADDLGHGTAVAGLALYGDLT 54 (291)
T ss_pred EEEEecCCCCCCChhhhhh------------------------hccccccccC---CCCcCCCCCChHHHHHHHHcCccc
Confidence 7999999999999999853 1111111110 011578999999999999976432
Q ss_pred ccccccccccceeecccccceeccccccCCCC-----CCHHHHHHHHHHHHHCC---CcEEEeecCCCCCCCCc-ccHHH
Q 044745 234 DASFFGVGQGTARGGVPSARIAAYKVCSPELG-----CAETAILGAFDDAIADG---VDIITISLGGQNTLNFT-QDVIA 304 (753)
Q Consensus 234 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-----~~~~~i~~ai~~a~~~g---vdVIn~SlG~~~~~~~~-~~~~~ 304 (753)
.....|+||+|+|+.+|++.. .| ....++++||+|+++.+ ++|||||||........ ...+.
T Consensus 55 --------~~~~~gvap~~~l~~~kv~~~-~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~ 125 (291)
T cd04847 55 --------LPGNGLPRPGCRLESVRVLPP-NGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWA 125 (291)
T ss_pred --------CCCCCCcccceEEEEEEEcCC-CCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHH
Confidence 122389999999999999988 42 56778999999999853 49999999987322211 12455
Q ss_pred HHHHH-HhhCCcEEEEecCCCCCCCCCc------------cCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCC
Q 044745 305 IGSFH-AMAKGVLTLHSAGNSGPFIGST------------VSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFS 371 (753)
Q Consensus 305 ~a~~~-a~~~Gi~vV~AAGN~G~~~~~~------------~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~ 371 (753)
.++++ +.++|++||+||||+|...... +...+++|+|||++.+.......
T Consensus 126 ~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s----------------- 188 (291)
T cd04847 126 AALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA----------------- 188 (291)
T ss_pred HHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc-----------------
Confidence 55544 5689999999999999876432 34568999999977552110000
Q ss_pred CCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccc
Q 044745 372 SKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSL 451 (753)
Q Consensus 372 ~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~ 451 (753)
.+.
T Consensus 189 -----------------------------------------------------------------~~~------------ 191 (291)
T cd04847 189 -----------------------------------------------------------------RYS------------ 191 (291)
T ss_pred -----------------------------------------------------------------ccc------------
Confidence 000
Q ss_pred cEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCC-
Q 044745 452 PAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVS- 530 (753)
Q Consensus 452 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~- 530 (753)
.......+.||+|||.. ++.+||||+|||++|.+..+......
T Consensus 192 ----------------------------------~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~ 235 (291)
T cd04847 192 ----------------------------------AVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGD 235 (291)
T ss_pred ----------------------------------ccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCc
Confidence 00001233499999987 99999999999999987654321000
Q ss_pred ----CCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 531 ----DDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 531 ----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
..........|..++|||||||||||++|||++++|+++|++||++|++||+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 236 LSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred ceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 0001112357999999999999999999999999999999999999999984
No 24
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-41 Score=360.73 Aligned_cols=255 Identities=26% Similarity=0.370 Sum_probs=190.0
Q ss_pred CcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCc-----------ceeeeeec-CC-----CCCCCCCCC
Q 044745 152 DIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNN-----------KIIGARYY-TT-----DDISGNTAR 214 (753)
Q Consensus 152 GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~-----------kl~g~~~~-~g-----~~~~~~~~~ 214 (753)
||+|||||||||++||+|.+.-. .+++|..+. +...-.++ .+ .........
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~------------~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 68 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLL------------PGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVS 68 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccc------------cCcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCC
Confidence 79999999999999999986521 111110000 00000000 00 001123345
Q ss_pred CCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHH----------HCCCc
Q 044745 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAI----------ADGVD 284 (753)
Q Consensus 215 D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~----------~~gvd 284 (753)
+..+|||||||||+|...++ . .+.||||+|+|+.+|+++. .+...+++++|++|++ .++++
T Consensus 69 ~~~~HGT~vAgiiaa~~~~~---~-----~~~GvAp~a~i~~~~v~~~-~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~ 139 (285)
T cd07496 69 PSSWHGTHVAGTIAAVTNNG---V-----GVAGVAWGARILPVRVLGK-CGGTLSDIVDGMRWAAGLPVPGVPVNPNPAK 139 (285)
T ss_pred CCCCCHHHHHHHHhCcCCCC---C-----CceeecCCCeEEEEEEecC-CCCcHHHHHHHHHHHhccCcCCCcccCCCCe
Confidence 67899999999999986421 1 2389999999999999987 5668899999999998 45789
Q ss_pred EEEeecCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCC-CCccCCCCceEEeecccCccceeeeEEeCCCeEEe
Q 044745 285 IITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFI-GSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLV 363 (753)
Q Consensus 285 VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~ 363 (753)
|||||||.... ....+..++..+.++|++||+||||+|... ...+...|++|+||+++.+
T Consensus 140 Iin~S~G~~~~---~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------------- 200 (285)
T cd07496 140 VINLSLGGDGA---CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR---------------- 200 (285)
T ss_pred EEEeCCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC----------------
Confidence 99999998732 145677888889999999999999999876 4566678899999985432
Q ss_pred eEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcc
Q 044745 364 GYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFN 443 (753)
Q Consensus 364 g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~ 443 (753)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEecc
Q 044745 444 KVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAF 523 (753)
Q Consensus 444 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~ 523 (753)
+.++.||++||.. ||.|||.+|.+..
T Consensus 201 ----------------------------------------------~~~~~~S~~g~~v--------di~apG~~i~~~~ 226 (285)
T cd07496 201 ----------------------------------------------GQRASYSNYGPAV--------DVSAPGGDCASDV 226 (285)
T ss_pred ----------------------------------------------CCcccccCCCCCC--------CEEeCCCCccccC
Confidence 4567899999987 9999999999887
Q ss_pred CCCCCCC--CCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044745 524 SPLGAVS--DDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTT 580 (753)
Q Consensus 524 ~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~T 580 (753)
....... ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 227 NGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred CCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 6542110 00111223578999999999999999999999999999999999999976
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=2.2e-41 Score=361.40 Aligned_cols=277 Identities=28% Similarity=0.363 Sum_probs=201.6
Q ss_pred CCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhc
Q 044745 146 KRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTAS 225 (753)
Q Consensus 146 ~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAG 225 (753)
++++|+||+|||||+|||++||+|.+... .+..+ .++++.....+.. ...|..+|||||||
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~~-~~~~~~~~~~~~~------~~~d~~~HGT~vAg 62 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTNL-FHRKIVRYDSLSD------TKDDVDGHGTHVAG 62 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCcc-CcccEEEeeccCC------CCCCCCCCcchhhe
Confidence 57899999999999999999999986421 11111 2344444443322 12278999999999
Q ss_pred ccccCcccccccccccccceeecccccceeccccccCCCC--CCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHH
Q 044745 226 TASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG--CAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVI 303 (753)
Q Consensus 226 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~ 303 (753)
||+|...+... ...+.||||+|+|+.+|+++. .+ ....++..+++++.+.+++|||||||..... .....
T Consensus 63 iia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~--~~~~~ 134 (293)
T cd04842 63 IIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDT-SGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNN--GYTLL 134 (293)
T ss_pred eeccCCcCCCc-----ccccccccccCeEEEEEeecc-CccccCCccHHHHHHHHHHhCCEEEeccCCCCCcc--ccchH
Confidence 99998643221 113499999999999999887 43 5667788999999999999999999988321 12333
Q ss_pred HHHHHHHh-h-CCcEEEEecCCCCCCCC---CccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceee
Q 044745 304 AIGSFHAM-A-KGVLTLHSAGNSGPFIG---STVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFP 378 (753)
Q Consensus 304 ~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~ 378 (753)
..++.++. + +|++||+||||+|.... ..+...+++|+|||++......
T Consensus 135 ~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~--------------------------- 187 (293)
T cd04842 135 ARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN--------------------------- 187 (293)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc---------------------------
Confidence 33444433 3 89999999999998765 5566889999999976542100
Q ss_pred EEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeeh
Q 044745 379 LVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNE 458 (753)
Q Consensus 379 lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~ 458 (753)
...|..
T Consensus 188 ----------------~~~~~~---------------------------------------------------------- 193 (293)
T cd04842 188 ----------------GEGGLG---------------------------------------------------------- 193 (293)
T ss_pred ----------------cccccc----------------------------------------------------------
Confidence 000000
Q ss_pred hhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCccc
Q 044745 459 DNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQ 538 (753)
Q Consensus 459 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 538 (753)
.......++.||++||+. ++++||||+|||.+|+++..... .......
T Consensus 194 --------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~----~~~~~~~ 241 (293)
T cd04842 194 --------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGG----GIGDTSD 241 (293)
T ss_pred --------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCC----CCCCCCh
Confidence 001125688999999987 89999999999999999875530 0011122
Q ss_pred ccceeeccccchhHHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhcCC
Q 044745 539 AKFNVVSGTSMSCPHAAGVAAYVKSFH-----P---DWSPSAIKSAIMTTAW 582 (753)
Q Consensus 539 ~~y~~~sGTSmAaP~VAG~aALl~~~~-----P---~ls~~~ik~~L~~TA~ 582 (753)
..|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 242 ~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 242 SAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred hheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 578999999999999999999999985 4 6677899999999985
No 26
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-41 Score=361.72 Aligned_cols=263 Identities=27% Similarity=0.302 Sum_probs=185.2
Q ss_pred cCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhh
Q 044745 145 RKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTA 224 (753)
Q Consensus 145 ~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVA 224 (753)
..+++|+||+|||||+|||++||+|.+.. +...+|.+. ..+.|..+||||||
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~------------------------~~~~~~~~~----~~~~d~~gHGT~VA 53 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD------------------------ITTKSFVGG----EDVQDGHGHGTHCA 53 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc------------------------ccCcccCCC----CCCCCCCCcHHHHH
Confidence 45789999999999999999999998541 112233221 23567899999999
Q ss_pred cccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCCC---------
Q 044745 225 STASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNT--------- 295 (753)
Q Consensus 225 Giiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~--------- 295 (753)
|||+|+..+ +...||||+|+|+.+|++.....+....++++|+||++.|++|||||||....
T Consensus 54 giiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~ 124 (297)
T cd07480 54 GTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPP 124 (297)
T ss_pred HHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCC
Confidence 999998632 33379999999999999876344777789999999999999999999998631
Q ss_pred CCCcccHHHHHHHHH---------------hhCCcEEEEecCCCCCCCCCccC-----CCCceEEeecccCccceeeeEE
Q 044745 296 LNFTQDVIAIGSFHA---------------MAKGVLTLHSAGNSGPFIGSTVS-----VAPWLMSVAASNTDRLFVDKVV 355 (753)
Q Consensus 296 ~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~~-----~~p~vitVga~~~~~~~~~~~~ 355 (753)
.......++.....+ .++|++||+||||+|........ ..+++++|++....
T Consensus 125 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~-------- 196 (297)
T cd07480 125 GLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGAL-------- 196 (297)
T ss_pred CchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCC--------
Confidence 111122233333333 68999999999999865432211 11233333332111
Q ss_pred eCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEE
Q 044745 356 LGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSV 435 (753)
Q Consensus 356 ~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i 435 (753)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeC
Q 044745 436 SLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAP 515 (753)
Q Consensus 436 ~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~AP 515 (753)
+....|+++.+ ....||||.||
T Consensus 197 ------------------------------------------------------~~~~~~~~~~~----~~~~~~dv~Ap 218 (297)
T cd07480 197 ------------------------------------------------------GRTGNFSAVAN----FSNGEVDIAAP 218 (297)
T ss_pred ------------------------------------------------------CCCCCccccCC----CCCCceEEEeC
Confidence 11222333322 23457899999
Q ss_pred CccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc----CCCCCCCCCCC
Q 044745 516 GVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTT----AWPMNSSKNKD 591 (753)
Q Consensus 516 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~T----A~~~~~~~~~~ 591 (753)
|.+|+++.+.. .|..++|||||||+|||++|||+|++|.+++.+++.+|+.. +..-.....
T Consensus 219 G~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~~~~~~-- 283 (297)
T cd07480 219 GVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQFAPGL-- 283 (297)
T ss_pred CCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCCCCCCC--
Confidence 99999887654 79999999999999999999999999999988888777732 221111111
Q ss_pred CCCccCCCCCCccc
Q 044745 592 AEFAFGSGHINPVE 605 (753)
Q Consensus 592 ~~~~~G~G~in~~~ 605 (753)
...++|+|++++.+
T Consensus 284 ~~~~~g~G~~~~~~ 297 (297)
T cd07480 284 DLPDRGVGLGLAPA 297 (297)
T ss_pred ChhhcCCceeecCC
Confidence 36789999998753
No 27
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-41 Score=351.57 Aligned_cols=241 Identities=27% Similarity=0.406 Sum_probs=191.3
Q ss_pred cEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCcc
Q 044745 153 IIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEV 232 (753)
Q Consensus 153 V~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~~ 232 (753)
|+|||||+|||++||+|.+.. ++...+.+... .....|..+|||||||||+|+..
T Consensus 1 V~VaviDsGi~~~hp~l~~~~----------------------~~~~~~~~~~~---~~~~~~~~~HGT~vAgiiag~~~ 55 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP----------------------KLVPGWNFVSN---NDPTSDIDGHGTACAGVAAAVGN 55 (242)
T ss_pred CEEEEecCCCCCCChhhccCc----------------------CccCCccccCC---CCCCCCCCCCHHHHHHHHHhccC
Confidence 789999999999999998630 11111122111 12456789999999999999853
Q ss_pred cccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHHHHHHhh
Q 044745 233 KDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMA 312 (753)
Q Consensus 233 ~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~ 312 (753)
+ ...+.|+||+|+|+.+|++.....+..+++.++++|+++.+++|||||||...........+..++..+.+
T Consensus 56 ~--------~~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~ 127 (242)
T cd07498 56 N--------GLGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRN 127 (242)
T ss_pred C--------CceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhh
Confidence 2 12248999999999999998722377889999999999999999999999874444456677778888888
Q ss_pred -CCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCC
Q 044745 313 -KGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCES 391 (753)
Q Consensus 313 -~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~ 391 (753)
+|+++|+||||+|......+...|++|+||+++.+
T Consensus 128 ~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------------------------------- 163 (242)
T cd07498 128 GKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN-------------------------------------------- 163 (242)
T ss_pred cCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC--------------------------------------------
Confidence 99999999999998876677788999999986532
Q ss_pred CCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHhcC
Q 044745 392 DFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKST 471 (753)
Q Consensus 392 ~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 471 (753)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeeccccchh
Q 044745 472 KKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551 (753)
Q Consensus 472 ~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAa 551 (753)
+.++.||++||.. |++|||.++......... ........|..++||||||
T Consensus 164 ------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~----~~~~~~~~~~~~~GTS~Aa 213 (242)
T cd07498 164 ------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGS----AGDYPGGGYGSFSGTSFAS 213 (242)
T ss_pred ------------------CCccCcCCCCCCe--------EEEeCcCCcccCCccccc----cccCCCCceEeeCcHHHHH
Confidence 3467899999987 999999999887544211 0112235788999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044745 552 PHAAGVAAYVKSFHPDWSPSAIKSAIMTT 580 (753)
Q Consensus 552 P~VAG~aALl~~~~P~ls~~~ik~~L~~T 580 (753)
|+|||++|||+|++|+|+++|||++|++|
T Consensus 214 p~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 214 PVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999976
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.4e-41 Score=351.30 Aligned_cols=247 Identities=19% Similarity=0.148 Sum_probs=178.5
Q ss_pred ccccccccCCC-CCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCC
Q 044745 138 GLNQSITRKRS-VESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDI 216 (753)
Q Consensus 138 g~~~~~~~~~~-~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~ 216 (753)
+++ .+|+... .|+||+|+|||+|||.+||+|.++.... +.+ ..+.|+
T Consensus 3 ~~~-~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~--------------------------~~~-----~~~~d~ 50 (277)
T cd04843 3 NAR-YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL--------------------------ISG-----LTDQAD 50 (277)
T ss_pred ChH-HHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc--------------------------cCC-----CCCCCC
Confidence 455 7898744 5999999999999999999998642100 000 125678
Q ss_pred CCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHH----CCCcEEEeecCC
Q 044745 217 QGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIA----DGVDIITISLGG 292 (753)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~----~gvdVIn~SlG~ 292 (753)
.+|||||||||+|..+ .+| +.||||+|+|+.+|++. .++++++|++|++ .++.+||||||.
T Consensus 51 ~gHGT~VAGiIaa~~n----~~G-----~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~~~~~~~~v~~in~s~g~ 115 (277)
T cd04843 51 SDHGTAVLGIIVAKDN----GIG-----VTGIAHGAQAAVVSSTR------VSNTADAILDAADYLSPGDVILLEMQTGG 115 (277)
T ss_pred CCCcchhheeeeeecC----CCc-----eeeeccCCEEEEEEecC------CCCHHHHHHHHHhccCCCCEEEEEccccC
Confidence 9999999999998741 122 38999999999999964 2345666666666 356788999998
Q ss_pred CCCCC-----CcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCcc-------------CCCCceEEeecccCccceeeeE
Q 044745 293 QNTLN-----FTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTV-------------SVAPWLMSVAASNTDRLFVDKV 354 (753)
Q Consensus 293 ~~~~~-----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~~p~vitVga~~~~~~~~~~~ 354 (753)
..... .....+..++.++.++|++||+||||++....... ...|++|+|||++.+.
T Consensus 116 ~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~------ 189 (277)
T cd04843 116 PNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT------ 189 (277)
T ss_pred CCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC------
Confidence 63211 12334556777888999999999999986532111 1235677777654220
Q ss_pred EeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEE
Q 044745 355 VLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGS 434 (753)
Q Consensus 355 ~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~ 434 (753)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceee
Q 044745 435 VSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISA 514 (753)
Q Consensus 435 i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~A 514 (753)
...++.||++||.. ||.|
T Consensus 190 ------------------------------------------------------~~~~~~fSn~G~~v--------di~A 207 (277)
T cd04843 190 ------------------------------------------------------GHTRLAFSNYGSRV--------DVYG 207 (277)
T ss_pred ------------------------------------------------------CCccccccCCCCcc--------ceEc
Confidence 02378899999987 9999
Q ss_pred CCccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHh----h-CCCCCHHHHHHHHHhcCC
Q 044745 515 PGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKS----F-HPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 515 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~P~ls~~~ik~~L~~TA~ 582 (753)
||++|+++....... ........|..++|||||||||||++|||++ + +|+|+++|||++|+.|++
T Consensus 208 PG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 208 WGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred CCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999999998764311 0011113457899999999999999999975 3 499999999999999974
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-40 Score=348.20 Aligned_cols=249 Identities=29% Similarity=0.388 Sum_probs=191.2
Q ss_pred CCcEEEEEecCCCCCCCCccCCCCCCCCccccc---cccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhccc
Q 044745 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKG---ACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTA 227 (753)
Q Consensus 151 ~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g---~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGii 227 (753)
+||+|||||||||++||+|.+. .|.. .+..+.+...+..+...+.+.- .....++.|..+|||||||||
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~HGT~va~ii 73 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDDGNGYVDDIYGWNF-VNNDNDPMDDNGHGTHVAGII 73 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccCCCCcccCCCcccc-cCCCCCCCCCCCcHHHHHHHH
Confidence 6999999999999999999975 2321 1221211111111111011100 112355678999999999999
Q ss_pred ccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHH
Q 044745 228 SGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIG 306 (753)
Q Consensus 228 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a 306 (753)
+|...++ ..+.|+||+|+|+.+|++.. .+ +...+++++++++++.+++|||+|||.... ...+..+
T Consensus 74 ~~~~~~~--------~~~~GvAp~a~l~~~~~~~~-~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~----~~~~~~~ 140 (259)
T cd07473 74 GAVGNNG--------IGIAGVAWNVKIMPLKFLGA-DGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP----SQALRDA 140 (259)
T ss_pred HCcCCCC--------CceEEeCCCCEEEEEEEeCC-CCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC----CHHHHHH
Confidence 9986432 22489999999999999987 55 888999999999999999999999998732 5677778
Q ss_pred HHHHhhCCcEEEEecCCCCCCC---CCccC--CCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEe
Q 044745 307 SFHAMAKGVLTLHSAGNSGPFI---GSTVS--VAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVD 381 (753)
Q Consensus 307 ~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~ 381 (753)
+.++.++|+++|+||||+|... ..++. ..|++|+||+.+.+
T Consensus 141 ~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~---------------------------------- 186 (259)
T cd07473 141 IARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN---------------------------------- 186 (259)
T ss_pred HHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC----------------------------------
Confidence 8889999999999999998763 22332 35788888875422
Q ss_pred CCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhH
Q 044745 382 GMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNF 461 (753)
Q Consensus 382 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g 461 (753)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccc
Q 044745 462 NSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKF 541 (753)
Q Consensus 462 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 541 (753)
+.++.||++||. +||+.|||.++++..+. ..|
T Consensus 187 ----------------------------~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~-------------~~~ 218 (259)
T cd07473 187 ----------------------------DALASFSNYGKK-------TVDLAAPGVDILSTSPG-------------GGY 218 (259)
T ss_pred ----------------------------CCcCcccCCCCC-------CcEEEeccCCeEeccCC-------------CcE
Confidence 345669999985 46999999999986654 368
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 542 NVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 542 ~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 219 ~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 219 GYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred EEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999985
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=2.6e-40 Score=340.33 Aligned_cols=226 Identities=35% Similarity=0.500 Sum_probs=187.0
Q ss_pred CcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCc
Q 044745 152 DIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNE 231 (753)
Q Consensus 152 GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~ 231 (753)
||+|||||+||+++||+|.+. +....+|..... ....|..+|||||||+|++..
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~------------------------~~~~~~~~~~~~--~~~~~~~~HGT~vA~ii~~~~ 54 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN------------------------IVGGANFTGDDN--NDYQDGNGHGTHVAGIIAALD 54 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc------------------------ccCcccccCCCC--CCCCCCCCCHHHHHHHHhccc
Confidence 799999999999999999854 122223321110 345678899999999999985
Q ss_pred ccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHHHHHH
Q 044745 232 VKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHA 310 (753)
Q Consensus 232 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a 310 (753)
.. ..+.|+||+|+|+.+|+++. .+ +...+++++++++++.|++|||||||... ....+..++..+
T Consensus 55 ~~---------~~~~giap~a~i~~~~~~~~-~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~----~~~~~~~~~~~a 120 (229)
T cd07477 55 NG---------VGVVGVAPEADLYAVKVLND-DGSGTYSDIIAGIEWAIENGMDIINMSLGGPS----DSPALREAIKKA 120 (229)
T ss_pred CC---------CccEeeCCCCEEEEEEEECC-CCCcCHHHHHHHHHHHHHCCCCEEEECCccCC----CCHHHHHHHHHH
Confidence 32 13489999999999999987 44 67789999999999999999999999872 234566677788
Q ss_pred hhCCcEEEEecCCCCCCCCCc--cCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCC
Q 044745 311 MAKGVLTLHSAGNSGPFIGST--VSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRP 388 (753)
Q Consensus 311 ~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~ 388 (753)
.++|+++|+||||++...... +...|++|+||+++.+
T Consensus 121 ~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~----------------------------------------- 159 (229)
T cd07477 121 YAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN----------------------------------------- 159 (229)
T ss_pred HHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC-----------------------------------------
Confidence 899999999999999876554 7788999999986533
Q ss_pred CCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHH
Q 044745 389 CESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYL 468 (753)
Q Consensus 389 ~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 468 (753)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeecccc
Q 044745 469 KSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTS 548 (753)
Q Consensus 469 ~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 548 (753)
+.+..||++|+.. |+.|||.+|+++++.. .|..++|||
T Consensus 160 ---------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~-------------~~~~~~GTS 197 (229)
T cd07477 160 ---------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPNN-------------DYAYLSGTS 197 (229)
T ss_pred ---------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCCC-------------CEEEEccHH
Confidence 3456799999976 9999999999987764 688999999
Q ss_pred chhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044745 549 MSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTT 580 (753)
Q Consensus 549 mAaP~VAG~aALl~~~~P~ls~~~ik~~L~~T 580 (753)
||||+|||++|||+|++|++++.+||++|++|
T Consensus 198 ~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 198 MATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999976
No 31
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=2.5e-41 Score=358.91 Aligned_cols=275 Identities=31% Similarity=0.473 Sum_probs=210.9
Q ss_pred EEEEEecCCCCCCCCcc-CCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCcc
Q 044745 154 IVGVIDSGIWPESESFS-DEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEV 232 (753)
Q Consensus 154 ~VaVIDtGid~~Hp~f~-d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~~ 232 (753)
+|||||||||++||+|. .. + ...++.+.+.|.+.........|..+|||||||+|+|..
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~va~ii~~~~- 60 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F------------------IWSKVPGGYNFVDGNPNPSPSDDDNGHGTHVAGIIAGNG- 60 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E------------------EEEEEEEEEETTTTBSTTTSSSTSSSHHHHHHHHHHHTT-
T ss_pred CEEEEcCCcCCCChhHccCC-c------------------ccccccceeeccCCCCCcCccccCCCccchhhhhccccc-
Confidence 69999999999999998 32 1 012333455554332233556788999999999999986
Q ss_pred cccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHH-HCCCcEEEeecCCCC--CCCCcccHHHHHHHH
Q 044745 233 KDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAI-ADGVDIITISLGGQN--TLNFTQDVIAIGSFH 309 (753)
Q Consensus 233 ~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~-~~gvdVIn~SlG~~~--~~~~~~~~~~~a~~~ 309 (753)
. .+ .....|+||+|+|+.+|++.. .+....+++++|++++ +.+++|||||||... ......+.+..+.+.
T Consensus 61 ~-~~-----~~~~~Gva~~a~l~~~~i~~~-~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~ 133 (282)
T PF00082_consen 61 G-NN-----GPGINGVAPNAKLYSYKIFDN-SGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDY 133 (282)
T ss_dssp S-SS-----SSSETCSSTTSEEEEEECSST-TSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHH
T ss_pred c-cc-----ccccccccccccccccccccc-cccccccccchhhhhhhccCCcccccccccccccccccccccccccccc
Confidence 2 21 222399999999999999877 5578888999999999 899999999999831 112233445666778
Q ss_pred HhhCCcEEEEecCCCCCCCCC---ccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCC
Q 044745 310 AMAKGVLTLHSAGNSGPFIGS---TVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVS 386 (753)
Q Consensus 310 a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~ 386 (753)
+.++|+++|+||||+|..... .+...+++|+||+++.+
T Consensus 134 ~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~--------------------------------------- 174 (282)
T PF00082_consen 134 AEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN--------------------------------------- 174 (282)
T ss_dssp HHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT---------------------------------------
T ss_pred ccccCcceeeccccccccccccccccccccccccccccccc---------------------------------------
Confidence 889999999999999876643 44556888999875422
Q ss_pred CCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHH
Q 044745 387 RPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYS 466 (753)
Q Consensus 387 ~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 466 (753)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeecc
Q 044745 467 YLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSG 546 (753)
Q Consensus 467 ~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 546 (753)
+.++.||++|+.. .++++||||+|||.++++.++... ...|..++|
T Consensus 175 -----------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~----------~~~~~~~~G 220 (282)
T PF00082_consen 175 -----------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSD----------RGSYTSFSG 220 (282)
T ss_dssp -----------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTE----------SEEEEEEES
T ss_pred -----------------------ccccccccccccc-cccccccccccccccccccccccc----------cccccccCc
Confidence 3457899997653 488999999999999988886541 035788999
Q ss_pred ccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCC
Q 044745 547 TSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608 (753)
Q Consensus 547 TSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 608 (753)
||||||+|||++|||+|++|+|++++||.+|++||.++........+..||||+||+.+|++
T Consensus 221 TS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 221 TSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHHHhC
Confidence 99999999999999999999999999999999999998832211136788999999999874
No 32
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.3e-40 Score=342.49 Aligned_cols=156 Identities=22% Similarity=0.295 Sum_probs=119.3
Q ss_pred CCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCC----CCCCCCCCCCCCcchhhc
Q 044745 150 ESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDD----ISGNTARDIQGHGTHTAS 225 (753)
Q Consensus 150 G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~----~~~~~~~D~~gHGThVAG 225 (753)
+++|+|||||||||++||+|.++ +...+.|..+. .......|..||||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~------------------------i~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAg 57 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK------------------------IIGGKSFSPYEGDGNKVSPYYVSADGHGTAMAR 57 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc------------------------cccCCCCCCCCCCcccCCCCCCCCCCcHHHHHH
Confidence 78999999999999999999853 11222231110 011223578999999999
Q ss_pred ccccCcccccccccccccceeecccccceeccccccCCC------CCCHHHHHHHHHHHHHCCCcEEEeecCCCCCC--C
Q 044745 226 TASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPEL------GCAETAILGAFDDAIADGVDIITISLGGQNTL--N 297 (753)
Q Consensus 226 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~------g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~--~ 297 (753)
|| .|+||+|+|+.+|+++... .++...+++||+||+++|+||||||||..... .
T Consensus 58 iI------------------~gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~ 119 (247)
T cd07491 58 MI------------------CRICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDND 119 (247)
T ss_pred HH------------------HHHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccc
Confidence 99 3679999999999987622 24677899999999999999999999987311 1
Q ss_pred CcccHHHHHHHHHhhCCcEEEEecCCCCCCCC-Cc--cCCCCceEEeecccCc
Q 044745 298 FTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIG-ST--VSVAPWLMSVAASNTD 347 (753)
Q Consensus 298 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~--~~~~p~vitVga~~~~ 347 (753)
.....+..++.+|.++|++||+||||+|.... .+ +...|++|+|||++.+
T Consensus 120 ~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~ 172 (247)
T cd07491 120 NDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED 172 (247)
T ss_pred cchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC
Confidence 13567888888999999999999999998754 22 3467899999986543
No 33
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=7.3e-40 Score=350.40 Aligned_cols=251 Identities=19% Similarity=0.191 Sum_probs=182.8
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCC--C
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTA--R 214 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~--~ 214 (753)
++++ .+|+.+++|+||+|+|||||||++||+|.+.-.. ...++|.....+ ..+ .
T Consensus 26 ~~~~-~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~----------------------~~~~~~~~~~~~-~~~~~~ 81 (297)
T cd04059 26 LNVT-PAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP----------------------EASYDFNDNDPD-PTPRYD 81 (297)
T ss_pred cccH-HHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc----------------------cccccccCCCCC-CCCccc
Confidence 4555 8999999999999999999999999999864110 011222111111 122 2
Q ss_pred CCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCC
Q 044745 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQN 294 (753)
Q Consensus 215 D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~ 294 (753)
|..+|||||||||+|...+.. ...||||+|+|+.+|++.. . .....+..++.++.+ .++|||||||...
T Consensus 82 ~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~-~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~ 150 (297)
T cd04059 82 DDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDG-D-VTDVVEAESLGLNPD-YIDIYSNSWGPDD 150 (297)
T ss_pred cccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCC-c-cccHHHHHHHhcccC-CceEEECCCCCCC
Confidence 788999999999999853210 2389999999999999876 3 344455566665554 4699999999763
Q ss_pred CCC---CcccHHHHHHHHHhh-----CCcEEEEecCCCCCCCCC----ccCCCCceEEeecccCccceeeeEEeCCCeEE
Q 044745 295 TLN---FTQDVIAIGSFHAMA-----KGVLTLHSAGNSGPFIGS----TVSVAPWLMSVAASNTDRLFVDKVVLGSGQTL 362 (753)
Q Consensus 295 ~~~---~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~ 362 (753)
... .....+..++.++.+ +|++||+||||+|..... .....|++|+|||++.+
T Consensus 151 ~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~--------------- 215 (297)
T cd04059 151 DGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN--------------- 215 (297)
T ss_pred CCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC---------------
Confidence 221 112233444444443 799999999999973321 12356889999875432
Q ss_pred eeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCc
Q 044745 363 VGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEF 442 (753)
Q Consensus 363 ~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~ 442 (753)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCcc----
Q 044745 443 NKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVD---- 518 (753)
Q Consensus 443 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~---- 518 (753)
+.++.||++|+.. ++.|||..
T Consensus 216 -----------------------------------------------g~~~~~s~~g~~~--------~~~a~g~~~~~~ 240 (297)
T cd04059 216 -----------------------------------------------GVRASYSEVGSSV--------LASAPSGGSGNP 240 (297)
T ss_pred -----------------------------------------------CCCcCCCCCCCcE--------EEEecCCCCCCC
Confidence 4567899999987 89999987
Q ss_pred ---EEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 519 ---ILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 519 ---I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
|+++.... ....|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 241 ~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 241 EASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 66665442 0136788999999999999999999999999999999999999985
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.8e-39 Score=328.63 Aligned_cols=222 Identities=23% Similarity=0.297 Sum_probs=173.7
Q ss_pred CcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCc
Q 044745 152 DIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNE 231 (753)
Q Consensus 152 GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~ 231 (753)
||+|||||||||++||+|.+.-.. ...+. . .....+.....|..||||||||||++.
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~------------~~~~~------~----~~~~~~~~~~~d~~gHGT~vAgiia~~- 57 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD------------GEVTI------D----LEIIVVSAEGGDKDGHGTACAGIIKKY- 57 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc------------ccccc------c----cccccCCCCCCCCCCcHHHHHHHHHcc-
Confidence 799999999999999999864110 00000 0 000111244567899999999999754
Q ss_pred ccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHHHHHHh
Q 044745 232 VKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAM 311 (753)
Q Consensus 232 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~ 311 (753)
+|+++|+.+|+++....+..+++++||+|+++++++|||||||... ......+..++.++.
T Consensus 58 -----------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~--~~~~~~~~~~~~~a~ 118 (222)
T cd07492 58 -----------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPG--DRDFPLLKELLEYAY 118 (222)
T ss_pred -----------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--CCcCHHHHHHHHHHH
Confidence 5999999999998723388899999999999999999999999872 223356677788888
Q ss_pred hCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCC
Q 044745 312 AKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCES 391 (753)
Q Consensus 312 ~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~ 391 (753)
++|+++|+||||++.... .+...|++|+|++...++
T Consensus 119 ~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~------------------------------------------- 154 (222)
T cd07492 119 KAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD------------------------------------------- 154 (222)
T ss_pred HCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC-------------------------------------------
Confidence 999999999999987543 356778899998754221
Q ss_pred CCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHhcC
Q 044745 392 DFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKST 471 (753)
Q Consensus 392 ~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 471 (753)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeeccccchh
Q 044745 472 KKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551 (753)
Q Consensus 472 ~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAa 551 (753)
.. +.+++ ++|+.|||.+|+++.+.+ .|..++||||||
T Consensus 155 -------------------~~---~~~~~--------~~~~~apg~~i~~~~~~~-------------~~~~~~GTS~Aa 191 (222)
T cd07492 155 -------------------PK---SFWYI--------YVEFSADGVDIIAPAPHG-------------RYLTVSGNSFAA 191 (222)
T ss_pred -------------------Cc---ccccC--------CceEEeCCCCeEeecCCC-------------CEEEeccHHHHH
Confidence 00 11233 349999999999987663 689999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 552 PHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 552 P~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
|+|||++|||+|++|+|+++|||++|+.||+
T Consensus 192 p~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 192 PHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999985
No 35
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=7e-39 Score=342.31 Aligned_cols=250 Identities=26% Similarity=0.349 Sum_probs=175.0
Q ss_pred CcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCC----CCCCCCCCCCCCCCcchhhccc
Q 044745 152 DIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTT----DDISGNTARDIQGHGTHTASTA 227 (753)
Q Consensus 152 GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g----~~~~~~~~~D~~gHGThVAGii 227 (753)
.|+|||||||||++||+|.+.-... . +.+.....+.. +..+.....|..||||||||+|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~----~-------------~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgii 63 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSY----S-------------KNLVPKGGYDGKEAGETGDINDIVDKLGHGTAVAGQI 63 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccc----c-------------cccccCCCcCCccccccCCCCcCCCCCCcHhHHHHHH
Confidence 4899999999999999999531100 0 00000000100 0111234567899999999999
Q ss_pred ccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCC-------c
Q 044745 228 SGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITISLGGQNTLNF-------T 299 (753)
Q Consensus 228 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~-------~ 299 (753)
+|+... .||||+|+|+.+|+++. .+ ....+++++|++|++++++|||||||....... .
T Consensus 64 a~~~~~------------~GvAp~a~i~~~~v~~~-~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~ 130 (294)
T cd07482 64 AANGNI------------KGVAPGIGIVSYRVFGS-CGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVE 130 (294)
T ss_pred hcCCCC------------ceeCCCCEEEEEEeecC-CCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhh
Confidence 987421 59999999999999987 55 488999999999999999999999997632211 1
Q ss_pred ccHHHHHHHHHhhCCcEEEEecCCCCCCCCC----------------------ccCCCCceEEeecccCccceeeeEEeC
Q 044745 300 QDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS----------------------TVSVAPWLMSVAASNTDRLFVDKVVLG 357 (753)
Q Consensus 300 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~----------------------~~~~~p~vitVga~~~~~~~~~~~~~~ 357 (753)
.+.+..++..+.++|++||+||||+|..... .+...+++|+|||++
T Consensus 131 ~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~------------ 198 (294)
T cd07482 131 YNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATD------------ 198 (294)
T ss_pred hHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeC------------
Confidence 2346667777889999999999999965411 112233444444322
Q ss_pred CCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEe
Q 044745 358 SGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSL 437 (753)
Q Consensus 358 ~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~ 437 (753)
T Consensus 199 -------------------------------------------------------------------------------- 198 (294)
T cd07482 199 -------------------------------------------------------------------------------- 198 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCc
Q 044745 438 NDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGV 517 (753)
Q Consensus 438 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~ 517 (753)
..+.++.||++|+. ++|++|||.
T Consensus 199 --------------------------------------------------~~~~~~~~S~~g~~-------~~~~~apG~ 221 (294)
T cd07482 199 --------------------------------------------------NNGNLSSFSNYGNS-------RIDLAAPGG 221 (294)
T ss_pred --------------------------------------------------CCCCcCccccCCCC-------cceEECCCC
Confidence 23567789999875 359999999
Q ss_pred cEEeccCCCCCC--CCC-------CCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCH-HHHHHHHHhc
Q 044745 518 DILAAFSPLGAV--SDD-------PEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP-SAIKSAIMTT 580 (753)
Q Consensus 518 ~I~sa~~~~~~~--~~~-------~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~-~~ik~~L~~T 580 (753)
++.......... ... ......+.|..++|||||||+|||++|||+|++|.|++ .|||++|++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 222 DFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred CcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 885322211100 000 00123367899999999999999999999999999999 9999999986
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=3.1e-38 Score=332.09 Aligned_cols=243 Identities=27% Similarity=0.357 Sum_probs=186.8
Q ss_pred CCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeec-CCCCCCCCCCCCCCCCcchhhccc
Q 044745 149 VESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYY-TTDDISGNTARDIQGHGTHTASTA 227 (753)
Q Consensus 149 ~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~-~g~~~~~~~~~D~~gHGThVAGii 227 (753)
+|+||+|+|||+||+++||+|.+..... ..+ ...........|..+|||||||+|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~HGT~vagii 56 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA------------------------SYYVAVNDAGYASNGDGDSHGTHVAGVI 56 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc------------------------ccccccccccCCCCCCCCChHHHHHHHH
Confidence 6999999999999999999998652110 001 000001134567899999999999
Q ss_pred ccCcccccccccccccceeecccccceeccccccCCC-CCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCC---------
Q 044745 228 SGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPEL-GCAETAILGAFDDAIADGVDIITISLGGQNTLN--------- 297 (753)
Q Consensus 228 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~-g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~--------- 297 (753)
+|...+ ..+.|+||+|+|+.+|+++... .+....+.++++++++.+++|||||||......
T Consensus 57 ag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~ 127 (267)
T cd04848 57 AAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGS 127 (267)
T ss_pred hcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhh
Confidence 998632 3348999999999999998722 366778899999999999999999999874222
Q ss_pred --CcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCc---------cCCCCceEEeecccCccceeeeEEeCCCeEEeeEE
Q 044745 298 --FTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGST---------VSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYS 366 (753)
Q Consensus 298 --~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---------~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s 366 (753)
.....+...+..+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~------------------- 188 (267)
T cd04848 128 AATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN------------------- 188 (267)
T ss_pred ccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC-------------------
Confidence 1455667777888999999999999998654332 2245788888876543
Q ss_pred eccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCccccc
Q 044745 367 INSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVS 446 (753)
Q Consensus 367 ~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~ 446 (753)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceec--ccCCCCCCCCCCCCCCceeeCCccEEeccC
Q 044745 447 SVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVAD--FSSRGPNEIVPDILKPDISAPGVDILAAFS 524 (753)
Q Consensus 447 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~--fSs~GP~~~~~~~~KPDI~APG~~I~sa~~ 524 (753)
+.... ||++|+.. ..+++.|||.+|+++.+
T Consensus 189 -------------------------------------------~~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~ 220 (267)
T cd04848 189 -------------------------------------------GTIASYSYSNRCGVA-----ANWCLAAPGENIYSTDP 220 (267)
T ss_pred -------------------------------------------CCcccccccccchhh-----hhheeecCcCceeeccc
Confidence 11222 47887643 23479999999999876
Q ss_pred CCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 525 PLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 525 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
... ..|..++|||||||+|||++||++|++|+|++++||++|++||+
T Consensus 221 ~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 221 DGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred CCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 421 46889999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-37 Score=328.55 Aligned_cols=352 Identities=23% Similarity=0.332 Sum_probs=266.6
Q ss_pred cCceEEEEecccCCCCCcchhhHHHHHHHHhCCCC-------ccceEEEEecceeeEEEEEeCH-----HHHHHhhcCCC
Q 044745 49 FLMVHIVYLGSLFRGEYETSSQHQSILQEVIGDSS-------VENVLVRSYKRSFNGFAAKLTD-----HERQKLASMEG 116 (753)
Q Consensus 49 ~~~~yIV~l~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~v~~~y~~~~~g~s~~~~~-----~~~~~L~~~p~ 116 (753)
.+.+|||+|+.... ...++.++++-++... .+......|-.-|.-+-++-.. -++++|+.+|.
T Consensus 48 ve~EyIv~F~~y~~-----Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~ 122 (1033)
T KOG4266|consen 48 VESEYIVRFKQYKP-----AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPD 122 (1033)
T ss_pred ecceeEEEeccccc-----chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCC
Confidence 34679999998543 4457777777664111 1222333454555555554432 25789999999
Q ss_pred eEEEEeCceeccccC-----------------------------------CCc----------cccccccccccCCCCCC
Q 044745 117 VVSVFPSRTLQLHTT-----------------------------------RSW----------DFMGLNQSITRKRSVES 151 (753)
Q Consensus 117 V~~v~~~~~~~~~~~-----------------------------------~s~----------~~~g~~~~~~~~~~~G~ 151 (753)
|+.|.|.+.+..-.. .+. ..++++ -+|+.|++|+
T Consensus 123 vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad-~LWk~GyTGa 201 (1033)
T KOG4266|consen 123 VKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGAD-HLWKKGYTGA 201 (1033)
T ss_pred ceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchh-hHHhccccCC
Confidence 999999876542100 000 123344 7899999999
Q ss_pred CcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCc
Q 044745 152 DIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNE 231 (753)
Q Consensus 152 GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~ 231 (753)
+|+|||.|||+.-+||.|+.- ..-.++... ....|.-||||.|||+|||..
T Consensus 202 ~VkvAiFDTGl~~~HPHFrnv-------------------------KERTNWTNE----~tLdD~lgHGTFVAGvia~~~ 252 (1033)
T KOG4266|consen 202 KVKVAIFDTGLRADHPHFRNV-------------------------KERTNWTNE----DTLDDNLGHGTFVAGVIAGRN 252 (1033)
T ss_pred ceEEEEeecccccCCccccch-------------------------hhhcCCcCc----cccccCcccceeEeeeeccch
Confidence 999999999999999999832 001112111 345578999999999999874
Q ss_pred ccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHHHHHHh
Q 044745 232 VKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAM 311 (753)
Q Consensus 232 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~ 311 (753)
.-.|.||+++|+++|||-+..-.+.+.+++|+.||+...+||+|+|+|++ ++.+.|+-.-+....
T Consensus 253 ------------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP---DfmD~PFVeKVwElt 317 (1033)
T KOG4266|consen 253 ------------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP---DFMDLPFVEKVWELT 317 (1033)
T ss_pred ------------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc---ccccchHHHHHHhhc
Confidence 12899999999999999872338889999999999999999999999998 567788877777888
Q ss_pred hCCcEEEEecCCCCCCCCCccCCCC--ceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCC
Q 044745 312 AKGVLTLHSAGNSGPFIGSTVSVAP--WLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPC 389 (753)
Q Consensus 312 ~~Gi~vV~AAGN~G~~~~~~~~~~p--~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~ 389 (753)
.+.|++|.|+||+||-.++..|.+. .||.||..+
T Consensus 318 AnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGId-------------------------------------------- 353 (1033)
T KOG4266|consen 318 ANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGID-------------------------------------------- 353 (1033)
T ss_pred cCcEEEEEecCCCCcceeecCCcccccceeeecccc--------------------------------------------
Confidence 9999999999999998877766442 344444221
Q ss_pred CCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHh
Q 044745 390 ESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLK 469 (753)
Q Consensus 390 ~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 469 (753)
T Consensus 354 -------------------------------------------------------------------------------- 353 (1033)
T KOG4266|consen 354 -------------------------------------------------------------------------------- 353 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEccceeecCCCCCceecccCCCCCC----CCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeec
Q 044745 470 STKKPEANILSTEAVKDSEAPVVADFSSRGPNE----IVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVS 545 (753)
Q Consensus 470 ~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~----~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 545 (753)
-.+.+|.|||||-+. ...||+||||++-|.+|...... .+...+|
T Consensus 354 ------------------fdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-------------~GCr~LS 402 (1033)
T KOG4266|consen 354 ------------------FDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-------------TGCRSLS 402 (1033)
T ss_pred ------------------ccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-------------ccchhcc
Confidence 236789999999764 26899999999999999866544 3678899
Q ss_pred cccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCCC
Q 044745 546 GTSMSCPHAAGVAAYVKS----FHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVNP 609 (753)
Q Consensus 546 GTSmAaP~VAG~aALl~~----~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~ 609 (753)
|||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.+++... -+.||+|++|+.++.+-
T Consensus 403 GTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~N----MfEQGaGkldLL~syqi 466 (1033)
T KOG4266|consen 403 GTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGPN----MFEQGAGKLDLLESYQI 466 (1033)
T ss_pred CCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCCc----hhhccCcchhHHHHHHH
Confidence 999999999999999977 2345699999999999999998873 58999999999998873
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3e-33 Score=288.40 Aligned_cols=194 Identities=22% Similarity=0.234 Sum_probs=143.2
Q ss_pred CCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHH--HHCCCcEEEeec
Q 044745 213 ARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDA--IADGVDIITISL 290 (753)
Q Consensus 213 ~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a--~~~gvdVIn~Sl 290 (753)
..|+++|||||||||||. .|++|+|+|+..++... ..+.+..+++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~----~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK----SNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC----CCCccHHHHHHHHHhcCCceEEEeCC
Confidence 457999999999999997 45679999998665221 223356677787 667999999999
Q ss_pred CCCCCCC-----CcccHHHHHHHHHhhC-CcEEEEecCCCCCCCC-----CccCCCCceEEeecccCccceeeeEEeCCC
Q 044745 291 GGQNTLN-----FTQDVIAIGSFHAMAK-GVLTLHSAGNSGPFIG-----STVSVAPWLMSVAASNTDRLFVDKVVLGSG 359 (753)
Q Consensus 291 G~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-----~~~~~~p~vitVga~~~~~~~~~~~~~~~~ 359 (753)
|...... ...+.+..+++.+.++ |+++|+||||+|.... ..+..++++|+|||++....
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~---------- 163 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD---------- 163 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC----------
Confidence 9873332 1234567777776666 9999999999998532 23446788999998654310
Q ss_pred eEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEecc
Q 044745 360 QTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLND 439 (753)
Q Consensus 360 ~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~ 439 (753)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCC--CCCCCCCCCCCCceeeCCc
Q 044745 440 VEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSR--GPNEIVPDILKPDISAPGV 517 (753)
Q Consensus 440 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~--GP~~~~~~~~KPDI~APG~ 517 (753)
....+.||++ +|+. ++..||||+|||+
T Consensus 164 -------------------------------------------------~~~~s~~sn~~~~~~~--~~~~~~di~APG~ 192 (247)
T cd07488 164 -------------------------------------------------RFFASDVSNAGSEINS--YGRRKVLIVAPGS 192 (247)
T ss_pred -------------------------------------------------cceecccccccCCCCC--CCCceeEEEEeee
Confidence 0123455664 4543 7889999999999
Q ss_pred cEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCH------HHHHHHHHhcC
Q 044745 518 DILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP------SAIKSAIMTTA 581 (753)
Q Consensus 518 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~------~~ik~~L~~TA 581 (753)
+|++ +. +.|..++|||||||||||++|||++++|++.+ -++|.+|++|+
T Consensus 193 ~i~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 193 NYNL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred eEEC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 9998 22 35889999999999999999999999877764 45677776653
No 39
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-33 Score=306.82 Aligned_cols=240 Identities=28% Similarity=0.364 Sum_probs=185.2
Q ss_pred CCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC--CCHHHHHHHHHHHHHCCCcEEEeecCCC
Q 044745 216 IQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG--CAETAILGAFDDAIADGVDIITISLGGQ 293 (753)
Q Consensus 216 ~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~gvdVIn~SlG~~ 293 (753)
...|||||||||+|+..+ .....||||+|+|+.+++.+..-| .+...+.+|+..++++++||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe--------~p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPE--------TPELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCC--------CccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 356999999999999754 334489999999999999765333 5667789999999999999999999987
Q ss_pred CCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccC---CCCceEEeecccCccceeeeEEeCCCeEEeeEEeccC
Q 044745 294 NTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVS---VAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSF 370 (753)
Q Consensus 294 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~---~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~ 370 (753)
..-+.....++..-..+.++|+++|+||||+||.-.+++. ..-.+|.|||.-......+.
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~----------------- 443 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAE----------------- 443 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhh-----------------
Confidence 5444455566655555668999999999999998877654 44578888874322110000
Q ss_pred CCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCccccccccc
Q 044745 371 SSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVS 450 (753)
Q Consensus 371 ~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 450 (753)
| + ++.
T Consensus 444 ------y-------------------------------------------------------~---~~e----------- 448 (1304)
T KOG1114|consen 444 ------Y-------------------------------------------------------S---VRE----------- 448 (1304)
T ss_pred ------h-------------------------------------------------------h---hhc-----------
Confidence 0 0 000
Q ss_pred ccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCC
Q 044745 451 LPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVS 530 (753)
Q Consensus 451 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 530 (753)
.-....-.+|||||+. ||-+-..|.|||+.|.+.-...
T Consensus 449 ------------------------------------~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~~t---- 486 (1304)
T KOG1114|consen 449 ------------------------------------PVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQYT---- 486 (1304)
T ss_pred ------------------------------------cCCCCccccccCCCCc--CCCcceEEecCCccccCCchhh----
Confidence 0113456789999998 9999999999999986532221
Q ss_pred CCCCCcccccceeeccccchhHHHHHHHHHHHhh----CCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCcccc
Q 044745 531 DDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSF----HPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEA 606 (753)
Q Consensus 531 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~A 606 (753)
...-..|.|||||+|+++|.+|||++. +-.|||..||.+|++||+++++. .++.+|.|+|++++|
T Consensus 487 -------lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i----d~faqG~GmlqVdkA 555 (1304)
T KOG1114|consen 487 -------LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI----DSFAQGQGMLQVDKA 555 (1304)
T ss_pred -------hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc----chhccCcceeehhHH
Confidence 135689999999999999999998764 67899999999999999999987 379999999999999
Q ss_pred CC
Q 044745 607 VN 608 (753)
Q Consensus 607 l~ 608 (753)
.+
T Consensus 556 yE 557 (1304)
T KOG1114|consen 556 YE 557 (1304)
T ss_pred HH
Confidence 76
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=2e-31 Score=274.69 Aligned_cols=234 Identities=33% Similarity=0.490 Sum_probs=176.9
Q ss_pred cEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCcc
Q 044745 153 IIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEV 232 (753)
Q Consensus 153 V~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~~ 232 (753)
|+|+|||+|++++||+|... ..... ...++...........+..+||||||++|++...
T Consensus 1 v~VaiiD~G~~~~~~~~~~~---------~~~~~------------~~~~~~~~~~~~~~~~~~~~HGt~va~~i~~~~~ 59 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGL---------FGGGD------------GGNDDDDNENGPTDPDDGNGHGTHVAGIIAASAN 59 (241)
T ss_pred CEEEEEeCCCCCCCcchhcc---------ccCcc------------cccccccCcCCCCCCCCCCCcHHHHHHHHhcCCC
Confidence 68999999999999987211 00000 0111111101112455788999999999999863
Q ss_pred cccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHH-HCCCcEEEeecCCCCCCCCcccHHHHHHHHH
Q 044745 233 KDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAI-ADGVDIITISLGGQNTLNFTQDVIAIGSFHA 310 (753)
Q Consensus 233 ~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~-~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a 310 (753)
. ....|+||+++|+.+|+... .+ .....+++++++++ +.+++|||||||..... ....+...+..+
T Consensus 60 ~---------~~~~g~a~~a~i~~~~~~~~-~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~--~~~~~~~~~~~~ 127 (241)
T cd00306 60 N---------GGGVGVAPGAKLIPVKVLDG-DGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP--PSSALSEAIDYA 127 (241)
T ss_pred C---------CCCEEeCCCCEEEEEEEecC-CCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC--CCHHHHHHHHHH
Confidence 2 11289999999999999877 44 67888999999999 89999999999988322 345667777777
Q ss_pred hhC-CcEEEEecCCCCCCCC---CccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCC
Q 044745 311 MAK-GVLTLHSAGNSGPFIG---STVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVS 386 (753)
Q Consensus 311 ~~~-Gi~vV~AAGN~G~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~ 386 (753)
.++ |+++|+||||++.... ..+...|++|+||+.+.+.
T Consensus 128 ~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~-------------------------------------- 169 (241)
T cd00306 128 LAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG-------------------------------------- 169 (241)
T ss_pred HHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC--------------------------------------
Confidence 777 9999999999998776 4667889999999865431
Q ss_pred CCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHH
Q 044745 387 RPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYS 466 (753)
Q Consensus 387 ~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 466 (753)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCCeEEEccceeecCCCCCcee-cccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeec
Q 044745 467 YLKSTKKPEANILSTEAVKDSEAPVVA-DFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVS 545 (753)
Q Consensus 467 ~~~~~~~~~~~i~~~~~~~~~~~~~~a-~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 545 (753)
... .++++|+ |||+.|||.++...... ....+..++
T Consensus 170 ------------------------~~~~~~~~~~~--------~~~~~apg~~~~~~~~~-----------~~~~~~~~~ 206 (241)
T cd00306 170 ------------------------TPASPSSNGGA--------GVDIAAPGGDILSSPTT-----------GGGGYATLS 206 (241)
T ss_pred ------------------------CccCCcCCCCC--------CceEEeCcCCccCcccC-----------CCCCeEeec
Confidence 111 3444444 56999999999875111 124789999
Q ss_pred cccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044745 546 GTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTT 580 (753)
Q Consensus 546 GTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~T 580 (753)
|||||||+|||++||++|++|++++.++|++|+.|
T Consensus 207 GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 207 GTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 99999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=8.9e-24 Score=241.47 Aligned_cols=269 Identities=28% Similarity=0.398 Sum_probs=197.3
Q ss_pred ccccC--CCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeec-CCCCCCCCCCCCCCC
Q 044745 142 SITRK--RSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYY-TTDDISGNTARDIQG 218 (753)
Q Consensus 142 ~~~~~--~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~-~g~~~~~~~~~D~~g 218 (753)
..|.. +.+|+||+|+|||+||+..||+|.+... ..++| .+... ....|..+
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~------------------------~~~~~~~~~~~--~~~~d~~~ 184 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV------------------------AGGDFVDGDPE--PPFLDDNG 184 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhcccc------------------------cccccccCCCC--CCCCCCCC
Confidence 67887 8999999999999999999999986521 00222 11100 02468999
Q ss_pred CcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCC--CcEEEeecCCCCC
Q 044745 219 HGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADG--VDIITISLGGQNT 295 (753)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g--vdVIn~SlG~~~~ 295 (753)
|||||+|++++.... ......|+||+++++.+|++....| ...++++++|++++..+ +++||||+|.. .
T Consensus 185 hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~-~ 256 (508)
T COG1404 185 HGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGS-L 256 (508)
T ss_pred Ccceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCC-c
Confidence 999999999984211 1122489999999999999987224 66777899999999999 99999999985 2
Q ss_pred CCCcccHHHHHHHHHhhCC-cEEEEecCCCCCCCCC----ccCCC--CceEEeecccCccceeeeEEeCCCeEEeeEEec
Q 044745 296 LNFTQDVIAIGSFHAMAKG-VLTLHSAGNSGPFIGS----TVSVA--PWLMSVAASNTDRLFVDKVVLGSGQTLVGYSIN 368 (753)
Q Consensus 296 ~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~~--p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~ 368 (753)
.......+..++..+...| +++|+++||.+..... .+... +.+++|++.+.
T Consensus 257 ~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~---------------------- 314 (508)
T COG1404 257 SDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL---------------------- 314 (508)
T ss_pred cccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC----------------------
Confidence 3334455666667777777 9999999999976521 11111 24555554321
Q ss_pred cCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCccccccc
Q 044745 369 SFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSV 448 (753)
Q Consensus 369 ~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~ 448 (753)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEe-----cc
Q 044745 449 VSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILA-----AF 523 (753)
Q Consensus 449 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~s-----a~ 523 (753)
.+.++.||++|+. -..+++|||.+|.+ .+
T Consensus 315 ----------------------------------------~~~~~~~s~~g~~------~~~~~~apg~~i~~~~~~~~~ 348 (508)
T COG1404 315 ----------------------------------------SDTVASFSNDGSP------TGVDIAAPGVNILSLSAVNTL 348 (508)
T ss_pred ----------------------------------------CCccccccccCCC------CCcceeCCCccccccccceee
Confidence 1567789999974 12299999999987 33
Q ss_pred CCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHhcCCC--CCCCCCCCCCCccCCCC
Q 044745 524 SPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHP-DWSPSAIKSAIMTTAWP--MNSSKNKDAEFAFGSGH 600 (753)
Q Consensus 524 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~ls~~~ik~~L~~TA~~--~~~~~~~~~~~~~G~G~ 600 (753)
++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++.. ... ....++.|.
T Consensus 349 ~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 412 (508)
T COG1404 349 PGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSG-----VDNLVGGGL 412 (508)
T ss_pred eCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccccCCc-----cccccccCc
Confidence 3321 2499999999999999999999999999 89999999999988874 222 246677776
Q ss_pred CCccccCC
Q 044745 601 INPVEAVN 608 (753)
Q Consensus 601 in~~~Al~ 608 (753)
.+...+..
T Consensus 413 ~~~~~~~~ 420 (508)
T COG1404 413 ANLDAAAT 420 (508)
T ss_pred cccccccc
Confidence 66665554
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.6e-23 Score=210.66 Aligned_cols=153 Identities=12% Similarity=0.144 Sum_probs=102.8
Q ss_pred ccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecC-CCCCCCCCCCC--CCC
Q 044745 142 SITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYT-TDDISGNTARD--IQG 218 (753)
Q Consensus 142 ~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~-g~~~~~~~~~D--~~g 218 (753)
.+|..+++|++|++||+|.||||-||+++.. ..--..++|. .++.+++-..| .+.
T Consensus 152 ~awa~g~tgknvttaimddgvdymhpdlk~n----------------------ynaeasydfssndpfpyprytddwfns 209 (629)
T KOG3526|consen 152 EAWALGYTGKNVTTAIMDDGVDYMHPDLKSN----------------------YNAEASYDFSSNDPFPYPRYTDDWFNS 209 (629)
T ss_pred HHHhhcccCCCceEEeecCCchhcCcchhcc----------------------cCceeecccccCCCCCCCcccchhhhc
Confidence 7899999999999999999999999999842 1112334452 22222222233 589
Q ss_pred CcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHH-CCCcEEEeecCCCCCCC
Q 044745 219 HGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIA-DGVDIITISLGGQNTLN 297 (753)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~gvdVIn~SlG~~~~~~ 297 (753)
|||.|||-+++...++ +.| .|||.+.++..+|+++. -+..|+++|--..-+ ..++|.+-|||......
T Consensus 210 hgtrcagev~aardng--icg------vgvaydskvagirmldq---pymtdlieansmghep~kihiysaswgptddgk 278 (629)
T KOG3526|consen 210 HGTRCAGEVVAARDNG--ICG------VGVAYDSKVAGIRMLDQ---PYMTDLIEANSMGHEPSKIHIYSASWGPTDDGK 278 (629)
T ss_pred cCccccceeeeeccCC--cee------eeeeeccccceeeecCC---chhhhhhhhcccCCCCceEEEEecccCcCCCCc
Confidence 9999999887765432 222 89999999999999876 556666665322211 24689999999875444
Q ss_pred CcccHH---HHHHHHHh-----hCCcEEEEecCCCCCC
Q 044745 298 FTQDVI---AIGSFHAM-----AKGVLTLHSAGNSGPF 327 (753)
Q Consensus 298 ~~~~~~---~~a~~~a~-----~~Gi~vV~AAGN~G~~ 327 (753)
..+.|- .+++-+-+ ..|-+.|.|.|..|.+
T Consensus 279 tvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 279 TVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred ccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 444443 22222323 2466889999887754
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.73 E-value=2e-17 Score=181.17 Aligned_cols=103 Identities=23% Similarity=0.196 Sum_probs=81.4
Q ss_pred ccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHC---CCcEEEeecCCCCCCC--CcccHHHHHHHHHhhCCcE
Q 044745 242 QGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIAD---GVDIITISLGGQNTLN--FTQDVIAIGSFHAMAKGVL 316 (753)
Q Consensus 242 ~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~---gvdVIn~SlG~~~~~~--~~~~~~~~a~~~a~~~Gi~ 316 (753)
...+.||||+|+|+.|+++++ ....++.++.+++.+ +++|||+|||...... ...+.+..++.+|..+||.
T Consensus 80 v~~~~gvAP~a~i~~~~~~~~----~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Git 155 (361)
T cd04056 80 VEYAGAIAPGANITLYFAPGT----VTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGIT 155 (361)
T ss_pred HHHHHhccCCCeEEEEEECCc----CccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeE
Confidence 344699999999999999654 245677888888887 9999999999873211 1235677788889999999
Q ss_pred EEEecCCCCCCCC-----------CccCCCCceEEeecccCcc
Q 044745 317 TLHSAGNSGPFIG-----------STVSVAPWLMSVAASNTDR 348 (753)
Q Consensus 317 vV~AAGN~G~~~~-----------~~~~~~p~vitVga~~~~~ 348 (753)
||+|+||+|.... ..+...|||++||+++...
T Consensus 156 vvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 156 VLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 9999999997653 2456889999999987653
No 44
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.95 E-value=6.8e-09 Score=96.27 Aligned_cols=115 Identities=37% Similarity=0.574 Sum_probs=90.4
Q ss_pred EEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEee------cchhHHHH
Q 044745 354 VVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQS------FDGFNEVH 427 (753)
Q Consensus 354 ~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~------~~k~~~~~ 427 (753)
++++||+.+.|+++++... ..+++++..... .......|.+ ..+...+++||||+|+| .+|..+++
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~----~~~~~~~C~~--~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~ 73 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS----GDVDASLCLP--GSLDPSKVKGKIVLCDRGGNTSRVAKGDAVK 73 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC----CCCccccCCC--CCCChhhccccEEEEeCCCCccHHHHHHHHH
Confidence 6889999999999997655 467887743321 2234478987 76777899999999987 35788999
Q ss_pred hcCceEEEEeccCCcccc---cccccccEEEeehhhHHHHHHHHhcCCCCeEE
Q 044745 428 KAGAEGSVSLNDVEFNKV---SSVVSLPAVALNEDNFNSIYSYLKSTKKPEAN 477 (753)
Q Consensus 428 ~~Ga~g~i~~~~~~~~~~---~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 477 (753)
++||.|+| ++++..... .....+|.+.+..++|+.|++|++++.+++++
T Consensus 74 ~~GA~gvI-~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 74 AAGGAGMI-LANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred HcCCcEEE-EEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999999 887765433 23468999999999999999999998777665
No 45
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.90 E-value=4e-09 Score=89.86 Aligned_cols=76 Identities=34% Similarity=0.461 Sum_probs=57.0
Q ss_pred eEEEEecccCCCCCcc-hhhHHHHHHHHhCC-----CCccceEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEeCce
Q 044745 52 VHIVYLGSLFRGEYET-SSQHQSILQEVIGD-----SSVENVLVRSYKRSFNGFAAKLTDHERQKLASMEGVVSVFPSRT 125 (753)
Q Consensus 52 ~yIV~l~~~~~~~~~~-~~~~~~~l~~~~~~-----~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~v~~~~~ 125 (753)
+|||+|++... ... ...+.+++.+++.. .....++.+.|+..||||+++++++++++|+++|+|++|+||..
T Consensus 1 ~YIV~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~ 78 (82)
T PF05922_consen 1 RYIVVFKDDAS--AASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQV 78 (82)
T ss_dssp EEEEEE-TTST--HHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECE
T ss_pred CEEEEECCCCC--cchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCce
Confidence 69999999865 333 55666666654331 35678999999889999999999999999999999999999999
Q ss_pred eccc
Q 044745 126 LQLH 129 (753)
Q Consensus 126 ~~~~ 129 (753)
++++
T Consensus 79 v~l~ 82 (82)
T PF05922_consen 79 VSLH 82 (82)
T ss_dssp EEE-
T ss_pred EecC
Confidence 8764
No 46
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=98.88 E-value=9.4e-09 Score=97.51 Aligned_cols=107 Identities=28% Similarity=0.417 Sum_probs=82.0
Q ss_pred CceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc---
Q 044745 374 GKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV--- 445 (753)
Q Consensus 374 ~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~--- 445 (753)
....+++|.+... . ..+...+++|||+||+| .+|..+++++||.|+| ++|+.....
T Consensus 25 ~~~~~lv~~g~g~-------------~--~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvI-i~n~~~~~~~~~ 88 (143)
T cd02133 25 GKTYELVDAGLGT-------------P--EDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVI-IYNNVDGLIPGT 88 (143)
T ss_pred CcEEEEEEccCCc-------------h--hccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEE-EeecCCCccccc
Confidence 4678899876532 2 34455679999999987 5789999999999999 888775433
Q ss_pred -cccccccEEEeehhhHHHHHHHHhcCCCCeEEE-ccceeecCCCCCceecccCCCCC
Q 044745 446 -SSVVSLPAVALNEDNFNSIYSYLKSTKKPEANI-LSTEAVKDSEAPVVADFSSRGPN 501 (753)
Q Consensus 446 -~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i-~~~~~~~~~~~~~~a~fSs~GP~ 501 (753)
.....+|.++++..+|+.|.+|+++ ++++ +..+.. ..+++.++.||||||+
T Consensus 89 ~~~~~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 89 LGEAVFIPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred CCCCCeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCC
Confidence 1124689999999999999999988 4445 333333 4567889999999996
No 47
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=7.3e-07 Score=98.96 Aligned_cols=157 Identities=15% Similarity=0.180 Sum_probs=100.7
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCC---CCCCC
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDI---SGNTA 213 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~---~~~~~ 213 (753)
+.+. ..|..+++|.++.|+|.|+|+...||+..+. ....+..++..... .-.+.
T Consensus 20 ~~v~-~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~----------------------~~~~~s~d~~~~~~~p~~~~~~ 76 (431)
T KOG3525|consen 20 LNVQ-NAWCKGYTGTRVSVTILDDGLECSHPDLRNN----------------------YDPLGSYDVNRHDNDPEPRCDG 76 (431)
T ss_pred ceee-eccccCCCCCceEEEEeeccccccCcccccc----------------------cCcceeEeeecCCCCcccccCC
Confidence 4455 8999999999999999999999999999843 12233444422211 11222
Q ss_pred CCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHH-HCCCcEEEeecCC
Q 044745 214 RDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAI-ADGVDIITISLGG 292 (753)
Q Consensus 214 ~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~-~~gvdVIn~SlG~ 292 (753)
.....|||-||+-.+....+. --..|+++++++..++++.. +. ++...+..... ...+++-+.|||-
T Consensus 77 ~~~~~~g~~Ca~~~a~~~~~~--------~C~vg~~~~~~~~g~~~l~~---~v-~~~~~~~~~~~~~~~~di~scsw~p 144 (431)
T KOG3525|consen 77 TNENKHGTRCAGCVAARANNL--------TCGVGVAYNATIGGIRMLAG---CV-SDAVEAPSLGFGPCHIDIYSCSWGP 144 (431)
T ss_pred CCccccCCCCCcccccccCCC--------cCCCCcccCccccceeeeee---ec-ccceecccccCCCCCceeecCcCCc
Confidence 235889999999999885221 11289999999999998643 11 12222222222 2346888999997
Q ss_pred CCCCCCccc---HHHHHHHHH-----hhCCcEEEEecCCCCCCC
Q 044745 293 QNTLNFTQD---VIAIGSFHA-----MAKGVLTLHSAGNSGPFI 328 (753)
Q Consensus 293 ~~~~~~~~~---~~~~a~~~a-----~~~Gi~vV~AAGN~G~~~ 328 (753)
......... ....+..+. ..+|-+.+++.||.|...
T Consensus 145 ddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 145 DDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred ccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 743222222 223333332 367889999999988654
No 48
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=6.8e-06 Score=98.19 Aligned_cols=161 Identities=18% Similarity=0.209 Sum_probs=89.4
Q ss_pred ccccCCCCCCCcEEEEEe-cCCCCCCCCcc--CCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCC
Q 044745 142 SITRKRSVESDIIVGVID-SGIWPESESFS--DEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQG 218 (753)
Q Consensus 142 ~~~~~~~~G~GV~VaVID-tGid~~Hp~f~--d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~g 218 (753)
.+++.+.+|+|++||||| -|-.+...++. |.-++-++ ....++. +.+ -..+
T Consensus 219 ~l~~~g~tGkG~tIaIid~yG~p~~~~dl~~Fd~~~Gip~-------------~~~~~V~----~ig---------~g~~ 272 (1174)
T COG4934 219 ALYESGATGKGETIAIIDAYGDPYNNQDLYSFDQQYGIPN-------------PILSRVT----YIG---------PGIG 272 (1174)
T ss_pred ecccCCCCCCCcEEEEEeccCCcccHHHHHHHHHhhCCCC-------------CCceEEE----EeC---------CCCC
Confidence 466678899999999999 56544433332 11000000 0001110 111 2456
Q ss_pred CcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCC-cEEEeecCCCC--C
Q 044745 219 HGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGV-DIITISLGGQN--T 295 (753)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gv-dVIn~SlG~~~--~ 295 (753)
|+||=+. . .-++..-..-+||+|+|..|-.- ......+..|+.+-...=+ -++-.||+... .
T Consensus 273 ~~~~g~~----E-------~sLDVE~s~A~AP~A~I~lvvap----~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~ 337 (1174)
T COG4934 273 SGTGGAE----E-------TSLDVEWSHAMAPKANIDLVVAP----NPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQG 337 (1174)
T ss_pred CCCCccc----c-------ceeehhhhhccCccCceEEEEcC----CCceehhhHHHHHHHHhhhcccccchhHHHHhcc
Confidence 7776553 1 11233344778999999998772 2222223333333222211 23335666431 1
Q ss_pred CCC--cccHHHHHHHHHhhCCcEEEEecCCCCCCCCC--------ccCCCCceEEeec
Q 044745 296 LNF--TQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS--------TVSVAPWLMSVAA 343 (753)
Q Consensus 296 ~~~--~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------~~~~~p~vitVga 343 (753)
..+ .-+.++...+.|..+|+.+++|+|.+|....+ .+..+|++++||.
T Consensus 338 ~~~~~~~~~~d~l~~qasaeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 338 PISPGYADLMDLLYEQASAEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred CCChHHHHHHHHHHHHhhccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 222 33445566667889999999999999876643 3457899999997
No 49
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.19 E-value=1.5e-05 Score=72.19 Aligned_cols=81 Identities=17% Similarity=0.322 Sum_probs=56.7
Q ss_pred eeEEEEEEEEecCCCCeeEEEEEec--------CCce---------E-EEEEEcCeEEEeeCCcEEEEEEEEEecc---C
Q 044745 671 FTINFPRTVTNVGLANSTYKAKILQ--------NSKI---------V-SIKVVPESLSFKSLNEKKSFSVTVTGKG---L 729 (753)
Q Consensus 671 ~~~~~~rtvtn~~~~~~~y~~~~~~--------~~g~---------~-~v~v~p~~~~~~~~~~~~~~~vt~~~~~---~ 729 (753)
...+++.||+|.|+.+.+|+++... ..|. . .++..|..+++ ++|++++|+|+++++. .
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHH
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCc
Confidence 3578889999999999999998661 0110 1 57777889999 8999999999999964 2
Q ss_pred CCCCeEEEEEEEEC-CCe-EEEccc
Q 044745 730 PNGAIVSTSLMWSD-GNH-RVRSPI 752 (753)
Q Consensus 730 ~~~~~~~G~~~~~~-~~~-~v~~p~ 752 (753)
..+.+++|+|.+++ ..+ .+++|+
T Consensus 87 ~~~~~~eG~I~~~~~~~~~~lsIPy 111 (112)
T PF06280_consen 87 SNGPFYEGFITFKSSDGEPDLSIPY 111 (112)
T ss_dssp TT-EEEEEEEEEESSTTSEEEEEEE
T ss_pred ccCCEEEEEEEEEcCCCCEEEEeee
Confidence 45789999999986 444 899997
No 50
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.11 E-value=8.8e-06 Score=74.96 Aligned_cols=92 Identities=18% Similarity=0.141 Sum_probs=71.0
Q ss_pred ceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc----
Q 044745 375 KTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV---- 445 (753)
Q Consensus 375 ~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~---- 445 (753)
..-++++.... ....|.+ ..+...+++|||++|+| .+|..+++++||.++| ++|+.....
T Consensus 17 i~~~lv~~~~~--------~~~gC~~--~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avI-i~n~~~~~~~~~~ 85 (122)
T cd04816 17 VTAPLVPLDPE--------RPAGCDA--SDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVI-VVNNSDGGGTAGT 85 (122)
T ss_pred cEEEEEEcCCC--------CccCCCc--cccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEE-EEeCCCCcccccc
Confidence 34566664421 2367987 66667789999999998 5789999999999999 888765321
Q ss_pred ---c-ccccccEEEeehhhHHHHHHHHhcCCCCeEE
Q 044745 446 ---S-SVVSLPAVALNEDNFNSIYSYLKSTKKPEAN 477 (753)
Q Consensus 446 ---~-~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 477 (753)
. ....+|.++|+..+|+.|++++..+.+.+++
T Consensus 86 ~~~~~~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~ 121 (122)
T cd04816 86 LGAPNIDLKVPVGVITKAAGAALRRRLGAGETLELD 121 (122)
T ss_pred ccCCCCCCeeeEEEEcHHHHHHHHHHHcCCCEEEEe
Confidence 1 3456999999999999999999988766554
No 51
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.02 E-value=4.8e-05 Score=70.06 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=62.1
Q ss_pred CCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCc-ccc------cccccccEEEeehhhHHH
Q 044745 396 QLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEF-NKV------SSVVSLPAVALNEDNFNS 463 (753)
Q Consensus 396 ~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~-~~~------~~~~~~p~~~i~~~~g~~ 463 (753)
..|.+ ..+ +.+++|||+|++| .+|..+++++||.++| +||+.. ... .+...+|.+.|+.++|+.
T Consensus 32 ~gC~~--~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vI-v~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~ 107 (122)
T cd02130 32 LGCDA--ADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAI-IYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKA 107 (122)
T ss_pred CCCCc--ccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEE-EEECCCCcccccccCCCCCCEeeEEEecHHHHHH
Confidence 45775 333 3579999999998 6899999999999999 888763 211 234579999999999999
Q ss_pred HHHHHhcCCCCeEE
Q 044745 464 IYSYLKSTKKPEAN 477 (753)
Q Consensus 464 l~~~~~~~~~~~~~ 477 (753)
|++.+.++++.+++
T Consensus 108 L~~~l~~g~~v~~~ 121 (122)
T cd02130 108 LVAALANGGEVSAN 121 (122)
T ss_pred HHHHHhcCCcEEEe
Confidence 99999998776654
No 52
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=97.94 E-value=9.1e-06 Score=71.97 Aligned_cols=70 Identities=23% Similarity=0.393 Sum_probs=55.3
Q ss_pred CCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcc-------cccccccccEEEeehhhHHH
Q 044745 396 QLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFN-------KVSSVVSLPAVALNEDNFNS 463 (753)
Q Consensus 396 ~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~-------~~~~~~~~p~~~i~~~~g~~ 463 (753)
..|.+ ......+++||||||+| .+|..+++++||.|+| ++|.... .......+|+++|+..+|+.
T Consensus 20 ~~~~~--~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvI-i~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~ 96 (101)
T PF02225_consen 20 GDCCP--SDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVI-IYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEA 96 (101)
T ss_dssp CHHHH--HHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEE-EE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHH
T ss_pred ccccc--cccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEE-EEeCCccccCcccccCCCCcEEEEEEeCHHHHhh
Confidence 34555 67778899999999988 6899999999999999 8882111 11556789999999999999
Q ss_pred HHHHH
Q 044745 464 IYSYL 468 (753)
Q Consensus 464 l~~~~ 468 (753)
|++|+
T Consensus 97 L~~~i 101 (101)
T PF02225_consen 97 LLAYI 101 (101)
T ss_dssp HHHHH
T ss_pred hhccC
Confidence 99986
No 53
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=97.93 E-value=3.2e-05 Score=70.77 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=63.4
Q ss_pred CCCCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc-------cccccccEEEeehhhH
Q 044745 394 DPQLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV-------SSVVSLPAVALNEDNF 461 (753)
Q Consensus 394 ~~~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~-------~~~~~~p~~~i~~~~g 461 (753)
+...|.+ .... .+++|||++|+| .+|..+++++||.|+| ++|+..... .....+|.+.++..+|
T Consensus 26 ~~~~C~~--~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvI-i~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g 101 (118)
T cd04818 26 NTDGCTA--FTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVI-VANNVAGGAPITMGGDDPDITIPAVMISQADG 101 (118)
T ss_pred cccccCC--CCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEE-EEECCCCCcceeccCCCCCCEEeEEEecHHHH
Confidence 4567987 5553 459999999987 4788999999999999 887765422 1235799999999999
Q ss_pred HHHHHHHhcCCCCeEE
Q 044745 462 NSIYSYLKSTKKPEAN 477 (753)
Q Consensus 462 ~~l~~~~~~~~~~~~~ 477 (753)
+.|+.|++.+...+++
T Consensus 102 ~~l~~~l~~g~~v~v~ 117 (118)
T cd04818 102 DALKAALAAGGTVTVT 117 (118)
T ss_pred HHHHHHHhcCCcEEEe
Confidence 9999999988765554
No 54
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=97.91 E-value=4.9e-05 Score=71.29 Aligned_cols=82 Identities=12% Similarity=0.038 Sum_probs=66.3
Q ss_pred CCCCcCCCCCCC--ccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCc-cc-c-----cccccccEEEeehh
Q 044745 394 DPQLCTDGQGCI--DSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEF-NK-V-----SSVVSLPAVALNED 459 (753)
Q Consensus 394 ~~~~C~~~~~~~--~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~-~~-~-----~~~~~~p~~~i~~~ 459 (753)
..+.|.+ ... ++.++.|+|+|++| .+|..+++.+||.++| +||+.. .. . .....+|.++|+..
T Consensus 43 ~~~gC~~--~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVI-Iyn~~~~~~~~~~m~~~~~~~ip~v~Is~~ 119 (138)
T cd02122 43 DHYGCDP--DTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVV-IYNNPGTGNETVKMSHPGTGDIVAIMITNP 119 (138)
T ss_pred CcCCCCC--CccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEE-EEECCCCCCceeeccCCCCCcceEEEEcHH
Confidence 4578987 444 45679999999999 7899999999999999 888875 21 1 22347899999999
Q ss_pred hHHHHHHHHhcCCCCeEEE
Q 044745 460 NFNSIYSYLKSTKKPEANI 478 (753)
Q Consensus 460 ~g~~l~~~~~~~~~~~~~i 478 (753)
+|+.|++++..+.+.+++|
T Consensus 120 ~G~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 120 KGMEILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHHHHcCCcEEEeC
Confidence 9999999999887766653
No 55
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=97.81 E-value=5.5e-05 Score=69.81 Aligned_cols=80 Identities=23% Similarity=0.276 Sum_probs=63.4
Q ss_pred CCCCcCCCCCC--CccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCccc--c--c-----ccccccEEEee
Q 044745 394 DPQLCTDGQGC--IDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNK--V--S-----SVVSLPAVALN 457 (753)
Q Consensus 394 ~~~~C~~~~~~--~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~--~--~-----~~~~~p~~~i~ 457 (753)
....|.+ +. +...+++||||+|.| .+|..+++++||.|+| ++++.... . . ....+|.+.++
T Consensus 29 ~~~~C~~--~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvi-i~~~~~~~~~~~~~~~~~~~~~~iP~~~is 105 (126)
T cd00538 29 PLVGCGY--GTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVI-IYNNGDDPGPQMGSVGLESTDPSIPTVGIS 105 (126)
T ss_pred ceEEEec--CcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEE-EEECCCCcccccccccCCCCCCcEeEEEeC
Confidence 4456776 54 567789999999987 5789999999999999 88776532 1 1 34579999999
Q ss_pred hhhHHHHHHHHhcCCCCeE
Q 044745 458 EDNFNSIYSYLKSTKKPEA 476 (753)
Q Consensus 458 ~~~g~~l~~~~~~~~~~~~ 476 (753)
..+|+.|..|+.++.+.++
T Consensus 106 ~~~g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 106 YADGEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHHHHhcCCceEE
Confidence 9999999999998765544
No 56
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.73 E-value=0.00013 Score=66.44 Aligned_cols=80 Identities=25% Similarity=0.259 Sum_probs=63.8
Q ss_pred CCCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCccc----c-------cccccccEEEeeh
Q 044745 395 PQLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNK----V-------SSVVSLPAVALNE 458 (753)
Q Consensus 395 ~~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~----~-------~~~~~~p~~~i~~ 458 (753)
.+.|.+ .. ...+++|||+|++| .+|..+++++||.++| +||+.... + .....||+++++.
T Consensus 21 ~~gC~~--~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avI-I~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~ 96 (118)
T cd02127 21 LEACEE--LR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVI-ITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLG 96 (118)
T ss_pred cccCCC--CC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEE-EEECCCCccccceEecCCCCCCCceEEEEEecH
Confidence 467986 22 24578999999999 7899999999999999 88875431 1 1234799999999
Q ss_pred hhHHHHHHHHhcCCCCeEEE
Q 044745 459 DNFNSIYSYLKSTKKPEANI 478 (753)
Q Consensus 459 ~~g~~l~~~~~~~~~~~~~i 478 (753)
.+|+.|++.+..+..+++.|
T Consensus 97 ~dG~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 97 KNGYMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHHHHcCCceEEee
Confidence 99999999999888776654
No 57
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.73 E-value=0.0001 Score=66.93 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=61.2
Q ss_pred CCCCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc-------cccccccEEEeehhhH
Q 044745 394 DPQLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV-------SSVVSLPAVALNEDNF 461 (753)
Q Consensus 394 ~~~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~-------~~~~~~p~~~i~~~~g 461 (753)
+...|.+ ..+.+.+++|||+|++| .+|..+++++||.++| ++|+..... .....||+++|+..+|
T Consensus 29 ~~~gC~~--~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVI-I~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG 105 (120)
T cd02129 29 SSVLCSA--SDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLL-IVSRERLVPPSGNRSEYEKIDIPVALLSYKDM 105 (120)
T ss_pred CcCCCCc--cccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEE-EEECCCCCCCCCCCCCCcCCcccEEEEeHHHH
Confidence 4567988 66666789999999999 7899999999999999 888775311 2445789999999999
Q ss_pred HHHHHHHhc
Q 044745 462 NSIYSYLKS 470 (753)
Q Consensus 462 ~~l~~~~~~ 470 (753)
+.|.+.+..
T Consensus 106 ~~i~~~l~~ 114 (120)
T cd02129 106 LDIQQTFGD 114 (120)
T ss_pred HHHHHHhcc
Confidence 999988864
No 58
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=97.69 E-value=0.00013 Score=67.59 Aligned_cols=78 Identities=24% Similarity=0.354 Sum_probs=61.3
Q ss_pred CCCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCccc------c------c---ccccccEE
Q 044745 395 PQLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNK------V------S---SVVSLPAV 454 (753)
Q Consensus 395 ~~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~------~------~---~~~~~p~~ 454 (753)
...|.+ .. .+.+++|||+|++| .+|..+++++||.++| ++|+.... . . +...||++
T Consensus 27 ~~gC~~--~~-~~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avI-I~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v 102 (126)
T cd02126 27 YRACSE--IT-NAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGI-VIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVV 102 (126)
T ss_pred hhcccC--CC-CccccCceEEEEECCCCcHHHHHHHHHHCCCcEEE-EEECCCCccccccceeEeecCCCCCCCCeEEEE
Confidence 467986 32 35578999999999 7899999999999999 88655431 1 1 24578999
Q ss_pred EeehhhHHHHHHHHhcCCCCeE
Q 044745 455 ALNEDNFNSIYSYLKSTKKPEA 476 (753)
Q Consensus 455 ~i~~~~g~~l~~~~~~~~~~~~ 476 (753)
+++..+|+.|++++..+...++
T Consensus 103 ~I~~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 103 FLFSKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred EEEHHHHHHHHHHHHhCCceEE
Confidence 9999999999999988765544
No 59
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.63 E-value=0.00019 Score=66.53 Aligned_cols=81 Identities=14% Similarity=0.076 Sum_probs=61.4
Q ss_pred CCCCCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc----cccccccEEEeehhhHHH
Q 044745 393 FDPQLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV----SSVVSLPAVALNEDNFNS 463 (753)
Q Consensus 393 ~~~~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~----~~~~~~p~~~i~~~~g~~ 463 (753)
...+.|.+ ...+..+++|||+|++| .+|..+++++||.++| +||+..... .+...+|.+.+ ..+|+.
T Consensus 39 ~~~~gC~~--~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~avi-iyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~ 114 (129)
T cd02124 39 VADDACQP--LPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVL-IYNNGSGPTDQVGSDADSIIAAVT-PEDGEA 114 (129)
T ss_pred CCcccCcC--CCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEE-EEECCCCcccccCCCCcceeeEEe-HHHHHH
Confidence 35578987 44444579999999999 6899999999999999 888765432 23334555555 999999
Q ss_pred HHHHHhcCCCCeEE
Q 044745 464 IYSYLKSTKKPEAN 477 (753)
Q Consensus 464 l~~~~~~~~~~~~~ 477 (753)
|++.+..+...+++
T Consensus 115 l~~~l~~G~~vtv~ 128 (129)
T cd02124 115 WIDALAAGSNVTVD 128 (129)
T ss_pred HHHHHhcCCeEEEe
Confidence 99999887665554
No 60
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=97.57 E-value=0.00026 Score=65.41 Aligned_cols=83 Identities=8% Similarity=0.077 Sum_probs=62.7
Q ss_pred CCCCcCCCCCCCccc----cccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc--------------ccccc
Q 044745 394 DPQLCTDGQGCIDSR----LAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV--------------SSVVS 450 (753)
Q Consensus 394 ~~~~C~~~~~~~~~~----~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~--------------~~~~~ 450 (753)
+.+.|.+......+. ...++|+|++| .+|..+++++||.++| ++|+..... .....
T Consensus 21 ~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avI-I~n~~~~~~~~m~~~~~~~~~~~~~~i~ 99 (127)
T cd02125 21 NRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVL-VADNVDEPLLTMDTPEESGSADYIEKIT 99 (127)
T ss_pred ccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEE-EEECCCCccccccCcccccccccCCCce
Confidence 346788722211122 36789999999 6899999999999999 888765422 12336
Q ss_pred ccEEEeehhhHHHHHHHHhcCCCCeEE
Q 044745 451 LPAVALNEDNFNSIYSYLKSTKKPEAN 477 (753)
Q Consensus 451 ~p~~~i~~~~g~~l~~~~~~~~~~~~~ 477 (753)
||+++|+..+|+.|+..+..+...+++
T Consensus 100 IP~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 100 IPSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EeEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 899999999999999999988776654
No 61
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.54 E-value=0.00027 Score=66.56 Aligned_cols=77 Identities=17% Similarity=0.209 Sum_probs=61.5
Q ss_pred CCCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc---------cccccccEEEeehhh
Q 044745 395 PQLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV---------SSVVSLPAVALNEDN 460 (753)
Q Consensus 395 ~~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~---------~~~~~~p~~~i~~~~ 460 (753)
.+.|.+ .. .+++|||+|++| .+|..+++++||.++| +||+..... .....||+++|+..+
T Consensus 48 ~~gC~~--~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avI-v~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~ 121 (139)
T cd02132 48 LDCCSP--ST---SKLSGSIALVERGECAFTEKAKIAEAGGASALL-IINDQEELYKMVCEDNDTSLNISIPVVMIPQSA 121 (139)
T ss_pred ccccCC--CC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEE-EEECCCcccccccCCCCCCCCCcEeEEEecHHH
Confidence 467986 32 378999999999 7899999999999999 888764321 113579999999999
Q ss_pred HHHHHHHHhcCCCCeEE
Q 044745 461 FNSIYSYLKSTKKPEAN 477 (753)
Q Consensus 461 g~~l~~~~~~~~~~~~~ 477 (753)
|+.|++++..+...+++
T Consensus 122 G~~L~~~l~~g~~Vtv~ 138 (139)
T cd02132 122 GDALNKSLDQGKKVEVL 138 (139)
T ss_pred HHHHHHHHHcCCcEEEe
Confidence 99999999988765543
No 62
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.49 E-value=0.00043 Score=64.75 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=52.4
Q ss_pred ccccccccEEEEee---c-------chhHHHHhcCceEEEEeccCC--cccc----c---ccccccEEEeehhhHHHHHH
Q 044745 406 DSRLAKGKIVICQS---F-------DGFNEVHKAGAEGSVSLNDVE--FNKV----S---SVVSLPAVALNEDNFNSIYS 466 (753)
Q Consensus 406 ~~~~~~gkiv~~~~---~-------~k~~~~~~~Ga~g~i~~~~~~--~~~~----~---~~~~~p~~~i~~~~g~~l~~ 466 (753)
.+.+++|||+|++| . +|..+++++||.++| +||+. .... . ....||++.+++.+|++|+.
T Consensus 51 ~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avI-IyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 51 ICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAI-VYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred cCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEE-EEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 34578999999988 2 678999999999999 99987 3211 1 14589999999999999999
Q ss_pred HHhcC
Q 044745 467 YLKST 471 (753)
Q Consensus 467 ~~~~~ 471 (753)
.+...
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 88543
No 63
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=97.45 E-value=0.00035 Score=63.58 Aligned_cols=74 Identities=18% Similarity=0.322 Sum_probs=59.4
Q ss_pred CCCCCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCccc-c--------cccccccEEEeeh
Q 044745 393 FDPQLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNK-V--------SSVVSLPAVALNE 458 (753)
Q Consensus 393 ~~~~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~-~--------~~~~~~p~~~i~~ 458 (753)
.+.+.|.+ . +..+++|||+|++| .+|..+++++||.++| ++|+.... . .....+|+++++.
T Consensus 25 ~p~~gC~~--~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avI-I~n~~~~~~~~~m~~~~~~~~v~IPav~Is~ 99 (117)
T cd04813 25 SPTDACSL--Q--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVI-VGDDEPGRGLITMFSNGDTDNVTIPAMFTSR 99 (117)
T ss_pred CCCCCCCC--C--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEE-EEECCCcccceecccCCCCCCcEEEEEEEcH
Confidence 35578976 3 56789999999999 7899999999999999 88776532 1 2344799999999
Q ss_pred hhHHHHHHHHhcC
Q 044745 459 DNFNSIYSYLKST 471 (753)
Q Consensus 459 ~~g~~l~~~~~~~ 471 (753)
.++++|..++...
T Consensus 100 ~~g~~L~~l~~~~ 112 (117)
T cd04813 100 TSYHLLSSLLPKS 112 (117)
T ss_pred HHHHHHHHhcccc
Confidence 9999999887643
No 64
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.39 E-value=0.0017 Score=60.19 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=62.9
Q ss_pred CceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEee-------cchhHHHHhcCceEEEEeccCCcccc-
Q 044745 374 GKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQS-------FDGFNEVHKAGAEGSVSLNDVEFNKV- 445 (753)
Q Consensus 374 ~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~-------~~k~~~~~~~Ga~g~i~~~~~~~~~~- 445 (753)
....++++.+.... ..+...+++||||++++ .+|..++.++||.|+| ++|+.....
T Consensus 22 ~~~~~lV~~g~G~~---------------~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi-~~~~~~g~~~ 85 (127)
T cd04819 22 EAKGEPVDAGYGLP---------------KDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFV-VVNTVPGVLP 85 (127)
T ss_pred CeeEEEEEeCCCCH---------------HHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEE-EEeCCCCcCc
Confidence 45778888775421 22334579999999988 2478899999999999 887654422
Q ss_pred ---------cccccccEEEeehhhHHHHHHHHhcCCC
Q 044745 446 ---------SSVVSLPAVALNEDNFNSIYSYLKSTKK 473 (753)
Q Consensus 446 ---------~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 473 (753)
.....+|++.|+.++|+.|...++.+..
T Consensus 86 ~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~~ 122 (127)
T cd04819 86 ATGDEGTEDGPPSPIPAASVSGEDGLRLARVAERNDT 122 (127)
T ss_pred ccccccccCCCCCCCCEEEEeHHHHHHHHHHHhcCCc
Confidence 1235699999999999999999987543
No 65
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.28 E-value=0.00079 Score=64.47 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=61.6
Q ss_pred CCCcCCCCCCC---ccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc------c---ccccccEEEee
Q 044745 395 PQLCTDGQGCI---DSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV------S---SVVSLPAVALN 457 (753)
Q Consensus 395 ~~~C~~~~~~~---~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~------~---~~~~~p~~~i~ 457 (753)
.+.|.+ ... +..++.|+|+|++| .+|..+++++||.++| ++|+..... . ....||+++++
T Consensus 50 ~~gC~~--~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avI-I~n~~~~~~~~m~~~~~~~~~v~IP~v~Is 126 (153)
T cd02123 50 LNACSP--IENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAI-VYNDESNDLISMSGNDQEIKGIDIPSVFVG 126 (153)
T ss_pred cccCCC--CcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEE-EEECCCCcceeccCCCCCCcCCEEEEEEee
Confidence 467986 333 33788999999999 7899999999999999 888765432 1 24589999999
Q ss_pred hhhHHHHHHHHhcCCC
Q 044745 458 EDNFNSIYSYLKSTKK 473 (753)
Q Consensus 458 ~~~g~~l~~~~~~~~~ 473 (753)
..+|+.|..++.....
T Consensus 127 ~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 127 KSTGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 9999999999987754
No 66
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=95.51 E-value=0.17 Score=44.70 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=57.0
Q ss_pred eEEEEEEEEecCCCCeeEEEEEecCCceEEEEEEcCeEEEeeCCcEEEEEEEEEeccCCCCCeEEEEEEEECCCeEEEcc
Q 044745 672 TINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWSDGNHRVRSP 751 (753)
Q Consensus 672 ~~~~~rtvtn~~~~~~~y~~~~~~~~g~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~~~~~~v~~p 751 (753)
..+.+.+++|.|.....|++....... ..++++|..-.+ ++|++.+++|+|.+.. . .+.+.+.|.....+..+.+|
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~~~~-~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-~-~g~~~~~l~i~~e~~~~~i~ 96 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPESLS-SFFSVEPPSGFL-APGESVELEVTFSPTK-P-LGDYEGSLVITTEGGSFEIP 96 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCCcCC-CCEEEECCCCEE-CCCCEEEEEEEEEeCC-C-CceEEEEEEEEECCeEEEEE
Confidence 556667899999999999987644223 456677776666 7899999999999654 2 34568888887666677776
Q ss_pred c
Q 044745 752 I 752 (753)
Q Consensus 752 ~ 752 (753)
+
T Consensus 97 v 97 (102)
T PF14874_consen 97 V 97 (102)
T ss_pred E
Confidence 5
No 67
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=95.36 E-value=0.052 Score=50.76 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=53.0
Q ss_pred cccccccEEEEeec-----------ch-------hHHHHhcCceEEEEeccCCc-------ccc----cccccccEEEee
Q 044745 407 SRLAKGKIVICQSF-----------DG-------FNEVHKAGAEGSVSLNDVEF-------NKV----SSVVSLPAVALN 457 (753)
Q Consensus 407 ~~~~~gkiv~~~~~-----------~k-------~~~~~~~Ga~g~i~~~~~~~-------~~~----~~~~~~p~~~i~ 457 (753)
..+++||||++.+. .| ...++++||.++| ++|... .+. .....+|++.++
T Consensus 35 ~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avI-v~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 35 AGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVL-IRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred hhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEE-EEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 46799999999772 23 5889999999999 877531 111 123469999999
Q ss_pred hhhHHHHHHHHhcCCCCeEE
Q 044745 458 EDNFNSIYSYLKSTKKPEAN 477 (753)
Q Consensus 458 ~~~g~~l~~~~~~~~~~~~~ 477 (753)
.+++..|...++.+....++
T Consensus 114 ~ed~~~L~r~l~~g~~v~~~ 133 (134)
T cd04815 114 VEDADMLERLAARGKPIRVN 133 (134)
T ss_pred hhcHHHHHHHHhCCCCeEEe
Confidence 99999999999887655443
No 68
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.23 E-value=0.14 Score=42.84 Aligned_cols=63 Identities=22% Similarity=0.203 Sum_probs=39.1
Q ss_pred eeEEEEEEEEecCCCC-eeEEEEEecCCceEEEEEEcCeEEEeeCCcEEEEEEEEEecc-CCCCCe
Q 044745 671 FTINFPRTVTNVGLAN-STYKAKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTVTGKG-LPNGAI 734 (753)
Q Consensus 671 ~~~~~~rtvtn~~~~~-~~y~~~~~~~~g~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~-~~~~~~ 734 (753)
.+.+++.+|+|.|... ...++++..|.| -++...|..+.--++|++++++++|+++. ...+.|
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~G-W~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y 69 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEG-WTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTY 69 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TT-SE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCC-ccccCCccccccCCCCCEEEEEEEEECCCCCCCceE
Confidence 4778999999999654 568888899998 88878888765338999999999999976 344444
No 69
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=93.11 E-value=0.26 Score=48.33 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=48.4
Q ss_pred cccccccEEEEee-----cchhHHHHhcCceEEEEeccCCccc--------------------c-------c--------
Q 044745 407 SRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNK--------------------V-------S-------- 446 (753)
Q Consensus 407 ~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~--------------------~-------~-------- 446 (753)
..+++|||+|+++ .+|..+++++||+|+| +|++.... + .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvI-iy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~ 129 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVL-IYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQ 129 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEE-EecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCccc
Confidence 4578999999987 6899999999999999 87763110 0 0
Q ss_pred --ccccccEEEeehhhHHHHHHHHhc
Q 044745 447 --SVVSLPAVALNEDNFNSIYSYLKS 470 (753)
Q Consensus 447 --~~~~~p~~~i~~~~g~~l~~~~~~ 470 (753)
.--.||+.-|+..+++.|+..+.-
T Consensus 130 ~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 130 SSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred ccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 012488899999999999998854
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=91.86 E-value=0.58 Score=43.73 Aligned_cols=59 Identities=24% Similarity=0.023 Sum_probs=43.1
Q ss_pred CceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEee-----------------cchhHHHHhcCceEEEE
Q 044745 374 GKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQS-----------------FDGFNEVHKAGAEGSVS 436 (753)
Q Consensus 374 ~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~-----------------~~k~~~~~~~Ga~g~i~ 436 (753)
...-++||.+... ....|.. ..+...+++||||++.+ ..|..++.++||.|+|
T Consensus 21 ~v~gelVfvGyG~-------~~~~~~~--~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVI- 90 (137)
T cd04820 21 SVEAPLVFVGYGL-------VAPELGH--DDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMI- 90 (137)
T ss_pred CceEeEEEecCCc-------CccCcCH--hhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEE-
Confidence 3467888887543 2244654 55557799999999986 1488999999999999
Q ss_pred eccCCc
Q 044745 437 LNDVEF 442 (753)
Q Consensus 437 ~~~~~~ 442 (753)
++++..
T Consensus 91 i~~d~~ 96 (137)
T cd04820 91 TLTTPR 96 (137)
T ss_pred EEeCCc
Confidence 776543
No 71
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=91.76 E-value=0.68 Score=44.08 Aligned_cols=60 Identities=17% Similarity=0.031 Sum_probs=43.0
Q ss_pred ceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeec-----------------------chhHHHHhcCc
Q 044745 375 KTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSF-----------------------DGFNEVHKAGA 431 (753)
Q Consensus 375 ~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~-----------------------~k~~~~~~~Ga 431 (753)
.+-++||.+.+. ....|.. ..+...+++||||++.+. .|..++...||
T Consensus 20 vtg~lVfvGyGi-------~~~~~~~--~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA 90 (151)
T cd04822 20 VTAPVVFAGYGI-------TAPELGY--DDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGA 90 (151)
T ss_pred ceEeEEEecCCc-------Cccccch--hhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCC
Confidence 456888877543 2234544 455567899999999652 47889999999
Q ss_pred eEEEEeccCCccc
Q 044745 432 EGSVSLNDVEFNK 444 (753)
Q Consensus 432 ~g~i~~~~~~~~~ 444 (753)
+|+| ++++....
T Consensus 91 ~aVI-v~~d~~~~ 102 (151)
T cd04822 91 AAVI-VVNGPNSH 102 (151)
T ss_pred eEEE-EEeCCccc
Confidence 9999 88776543
No 72
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=91.12 E-value=1.7 Score=39.50 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=39.6
Q ss_pred eEEEEEEEEecCCCCeeEEEEEecCCceEEEEEEcCeEEEeeCCcEEEEEEEEEeccC
Q 044745 672 TINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTVTGKGL 729 (753)
Q Consensus 672 ~~~~~rtvtn~~~~~~~y~~~~~~~~g~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~ 729 (753)
.-.++..++|.+..+.+|+++++.+++ +++......+++ ++|++.++.|.+.++..
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~-~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPG-AELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS--EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCC-eEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 335777999999999999999999888 898654478899 89999999999999863
No 73
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=90.75 E-value=0.74 Score=50.77 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=58.1
Q ss_pred cccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc---------cccccccEEEeehhhHHHHHHHHhcCC
Q 044745 407 SRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV---------SSVVSLPAVALNEDNFNSIYSYLKSTK 472 (753)
Q Consensus 407 ~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~---------~~~~~~p~~~i~~~~g~~l~~~~~~~~ 472 (753)
...++||+++..| .+|...++++||.+++ +.|+...-. ..+..||+++++.++++.+.....++.
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLl-iin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~ 169 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALL-IINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSND 169 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEE-EEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCC
Confidence 4568899999998 7999999999999999 777643211 345689999999999999999888777
Q ss_pred CCeEEE
Q 044745 473 KPEANI 478 (753)
Q Consensus 473 ~~~~~i 478 (753)
+.++.+
T Consensus 170 ~V~~~l 175 (541)
T KOG2442|consen 170 NVELAL 175 (541)
T ss_pred eEEEEE
Confidence 777766
No 74
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=90.61 E-value=0.63 Score=43.80 Aligned_cols=59 Identities=20% Similarity=0.064 Sum_probs=43.1
Q ss_pred CceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEee-----------------------cchhHHHHhcC
Q 044745 374 GKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQS-----------------------FDGFNEVHKAG 430 (753)
Q Consensus 374 ~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~-----------------------~~k~~~~~~~G 430 (753)
....|+|+.+.+. ....|.. ..+...|++||||++.+ ..|...++++|
T Consensus 19 ~~~aelVfvGyGi-------~a~~~~~--dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~G 89 (142)
T cd04814 19 IKDAPLVFVGYGI-------KAPELSW--DDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHG 89 (142)
T ss_pred ccceeeEEecCCc-------CCCCCCh--hhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCC
Confidence 3567888887543 2234654 56667799999999854 24888999999
Q ss_pred ceEEEEeccCCc
Q 044745 431 AEGSVSLNDVEF 442 (753)
Q Consensus 431 a~g~i~~~~~~~ 442 (753)
|.|+| ++++..
T Consensus 90 A~gvI-ii~~~~ 100 (142)
T cd04814 90 AAGVL-IVHELA 100 (142)
T ss_pred CcEEE-EEeCCC
Confidence 99999 776644
No 75
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=89.77 E-value=8.5 Score=35.24 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=51.3
Q ss_pred eeEEEEEEEEecCCCCeeEEEEEec----CCceEE-------------------EEEEcCeEEEeeCCcEEEEEEEEEec
Q 044745 671 FTINFPRTVTNVGLANSTYKAKILQ----NSKIVS-------------------IKVVPESLSFKSLNEKKSFSVTVTGK 727 (753)
Q Consensus 671 ~~~~~~rtvtn~~~~~~~y~~~~~~----~~g~~~-------------------v~v~p~~~~~~~~~~~~~~~vt~~~~ 727 (753)
.+.+++.+|+|.++.+.+|.+.+.. ..|.+. |++ |..+++ +++++++++++++.+
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEcC
Confidence 4778999999999999999997522 122111 111 445788 899999999999998
Q ss_pred cCCCCCeEEEEEEEE
Q 044745 728 GLPNGAIVSTSLMWS 742 (753)
Q Consensus 728 ~~~~~~~~~G~~~~~ 742 (753)
...-.+.+-|-|.++
T Consensus 105 ~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 105 KKAFDGIILGGIYFS 119 (121)
T ss_pred CCCcCCEEEeeEEEE
Confidence 866667778878775
No 76
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=81.73 E-value=0.98 Score=53.54 Aligned_cols=24 Identities=13% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCCCCCcEEEEEecCCCCCCCCcc
Q 044745 147 RSVESDIIVGVIDSGIWPESESFS 170 (753)
Q Consensus 147 ~~~G~GV~VaVIDtGid~~Hp~f~ 170 (753)
.++|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 679999999999999999999886
No 77
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=81.71 E-value=1.5 Score=41.39 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=29.0
Q ss_pred ccccccEEEEee-----cchhHHHHhcCceEEEEeccCC
Q 044745 408 RLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVE 441 (753)
Q Consensus 408 ~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~ 441 (753)
-+++|||+|+.. ..|..+++..||.|+| +|.+.
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~Gvi-IYsDP 74 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVL-LYVDP 74 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEE-EecCh
Confidence 579999999985 7899999999999999 77754
No 78
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=74.98 E-value=29 Score=31.50 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=44.3
Q ss_pred EEEEEEEecCCCCeeEEEEEec---CC---ceEEEEEEcCeEEEeeCCcEEEEEEEEEeccCCCCCeEEEEEEEE
Q 044745 674 NFPRTVTNVGLANSTYKAKILQ---NS---KIVSIKVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWS 742 (753)
Q Consensus 674 ~~~rtvtn~~~~~~~y~~~~~~---~~---g~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~ 742 (753)
+.+.+|+|.|+.+..+.+.+.. .. .+-.+.|+|..+.+ ++|+++.+.| +.....+...-..=+|.+.
T Consensus 17 ~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 17 SASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp EEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred EEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 4567899999877777777764 11 10257789999999 8999999999 7644323333223345553
No 79
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=73.90 E-value=22 Score=31.27 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=40.1
Q ss_pred eEEEEEEEEecCCCCeeEEEEEecCCceEEEEEEcCeEEEeeCCcEEEEEEEEEecc
Q 044745 672 TINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTVTGKG 728 (753)
Q Consensus 672 ~~~~~rtvtn~~~~~~~y~~~~~~~~g~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 728 (753)
......+|+|.++..-.|.+....|.. +.|.|..-.+ +++++.++.|++....
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~---y~v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNR---YRVKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTT---EEEESSEEEE--TTEEEEEEEEE-SSS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCce---EEecCCCEEE-CCCCEEEEEEEEEecc
Confidence 456667999999998999999888876 4567998888 7899999999999854
No 80
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.76 E-value=9.5 Score=41.22 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=57.3
Q ss_pred CCCcCCCCC-CCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc-------cccccccEEEeehhhH
Q 044745 395 PQLCTDGQG-CIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV-------SSVVSLPAVALNEDNF 461 (753)
Q Consensus 395 ~~~C~~~~~-~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~-------~~~~~~p~~~i~~~~g 461 (753)
.++|.+-.. ..........++++.| .+|..+++.+|..++| +||+...+. .....+++++++...|
T Consensus 62 ~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaI-Vynn~~~~~lv~~~~~~~~v~i~~~~vs~~~g 140 (348)
T KOG4628|consen 62 LNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAI-VYNNVGSEDLVAMASNPSKVDIHIVFVSVFSG 140 (348)
T ss_pred ccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEE-EecCCCCchheeeccCCccceeEEEEEeeehH
Confidence 356776211 1123456678888888 7899999999999999 999776542 4566789999999999
Q ss_pred HHHHHHHhcC
Q 044745 462 NSIYSYLKST 471 (753)
Q Consensus 462 ~~l~~~~~~~ 471 (753)
+.|..|....
T Consensus 141 e~l~~~~~~~ 150 (348)
T KOG4628|consen 141 ELLSSYAGRT 150 (348)
T ss_pred HHHHHhhccc
Confidence 9999986554
No 81
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=72.31 E-value=3.7 Score=41.69 Aligned_cols=35 Identities=29% Similarity=0.227 Sum_probs=29.6
Q ss_pred cccccccEEEEee-----cchhHHHHhcCceEEEEeccCCc
Q 044745 407 SRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEF 442 (753)
Q Consensus 407 ~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~ 442 (753)
..+++|||||+.+ .+|..+++.+||+|+| +|++..
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVI-iy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVI-IYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEE-EEeCch
Confidence 4579999999976 5689999999999999 777643
No 82
>COG1470 Predicted membrane protein [Function unknown]
Probab=68.27 E-value=29 Score=38.71 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=53.4
Q ss_pred eEEEEEEEEecCCCC-eeEEEEEecCCceEEEEEEcCeEEEeeCCcEEEEEEEEEecc-CCCCCeEEEEEEE
Q 044745 672 TINFPRTVTNVGLAN-STYKAKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTVTGKG-LPNGAIVSTSLMW 741 (753)
Q Consensus 672 ~~~~~rtvtn~~~~~-~~y~~~~~~~~g~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~-~~~~~~~~G~~~~ 741 (753)
..++...+.|.|..+ ..-.+++..|.| -++.|+|.++---++|+++++.+|++++. +.++.| +=.|+-
T Consensus 398 e~~i~i~I~NsGna~LtdIkl~v~~Pqg-Wei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY-~i~i~~ 467 (513)
T COG1470 398 EKTIRISIENSGNAPLTDIKLTVNGPQG-WEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDY-RITITA 467 (513)
T ss_pred cceEEEEEEecCCCccceeeEEecCCcc-ceEEECcccccccCCCCcceEEEEEEcCCCCCCCcE-EEEEEE
Confidence 567777899999766 467888999999 99999999765558999999999999986 445554 434443
No 83
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=64.09 E-value=31 Score=38.88 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=46.5
Q ss_pred eEEEEEEEEecCCCCeeEEEEEecCCceEEEEEEcCeEEEeeCCcEEEEEEEEEecc
Q 044745 672 TINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTVTGKG 728 (753)
Q Consensus 672 ~~~~~rtvtn~~~~~~~y~~~~~~~~g~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 728 (753)
.-..+..+.|.+..+.+|+++++..++ .++...++.+++ ++||+.++.|++..+.
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~-~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPG-IKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCC-cEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 445777899999999999999999888 888775457888 8899999999998875
No 84
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=63.91 E-value=21 Score=29.93 Aligned_cols=41 Identities=22% Similarity=0.385 Sum_probs=30.9
Q ss_pred EEEEEEcCeEEEeeCCcEEEEEEEEEeccCCCCCeEEEEEEEECCC
Q 044745 700 VSIKVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWSDGN 745 (753)
Q Consensus 700 ~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~~~~ 745 (753)
..+++.|..+++ ..|+++.|+++++.... .- ...+.|+..+
T Consensus 3 ~~i~i~p~~~~l-~~G~~~~l~a~~~~~~~---~~-~~~v~w~Ssn 43 (81)
T smart00635 3 TSVTVTPTTASV-KKGLTLQLTATVTPSSA---KV-TGKVTWTSSN 43 (81)
T ss_pred cEEEEeCCeeEE-eCCCeEEEEEEEECCCC---Cc-cceEEEEECC
Confidence 367889999999 68999999999765542 12 6778997544
No 85
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=63.72 E-value=62 Score=30.31 Aligned_cols=43 Identities=5% Similarity=0.174 Sum_probs=36.8
Q ss_pred ceEEEEEEcCeEEEeeCCcEEEEEEEEEeccCCCCCeEEEEEEEE
Q 044745 698 KIVSIKVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWS 742 (753)
Q Consensus 698 g~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~ 742 (753)
|++++.-.|+.+++ .+++.++++.++++.. ...++.||.|+|.
T Consensus 96 gdLklve~p~~~tL-~P~~~~~i~~~iKVsS-tetGvIfG~I~Yd 138 (140)
T PF07718_consen 96 GDLKLVERPQPITL-APHGFARIKATIKVSS-TETGVIFGNIVYD 138 (140)
T ss_pred CCcEEccCCCceee-CCCcEEEEEEEEEEEe-ccCCEEEEEEEEe
Confidence 33888888999999 7899999999999986 5677899999985
No 86
>COG1470 Predicted membrane protein [Function unknown]
Probab=63.09 E-value=67 Score=36.00 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=47.5
Q ss_pred eeEEEEEEEEecCCCCeeEEEEEe-cCCceEEEEEEcC-----eEEEeeCCcEEEEEEEEEecc-CCCCCeE
Q 044745 671 FTINFPRTVTNVGLANSTYKAKIL-QNSKIVSIKVVPE-----SLSFKSLNEKKSFSVTVTGKG-LPNGAIV 735 (753)
Q Consensus 671 ~~~~~~rtvtn~~~~~~~y~~~~~-~~~g~~~v~v~p~-----~~~~~~~~~~~~~~vt~~~~~-~~~~~~~ 735 (753)
.+..|+.++.|.|..+.+|..... .|.+ .+...+-. ++.+ ++||+++|+|.+.++. +..+.|-
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~-w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~na~pG~Yn 353 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEG-WTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLNATPGTYN 353 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCC-cceEEeeCceEEEEEEe-cCCCceEEEEEEecCCCCCCCcee
Confidence 366788899999999999999998 6765 55555433 3555 7899999999999886 3344443
No 87
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=59.67 E-value=7.4 Score=33.95 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=12.0
Q ss_pred CccchhHHHHHHHHHHHHHHhh
Q 044745 1 MAKNGFLLFNFLSFILFLPMSI 22 (753)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ 22 (753)
|--|.|+++.+++.+++|+++.
T Consensus 1 MaSK~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSE 22 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhh
Confidence 5656666555555555555553
No 88
>PLN03080 Probable beta-xylosidase; Provisional
Probab=50.67 E-value=45 Score=40.73 Aligned_cols=78 Identities=17% Similarity=0.109 Sum_probs=46.9
Q ss_pred eEEEEEEEEecCCCCeeEEEEE--ecCCceEEEEEE------cCeEEEeeCCcEEEEEEEEEe-cc----CCCCCeE--E
Q 044745 672 TINFPRTVTNVGLANSTYKAKI--LQNSKIVSIKVV------PESLSFKSLNEKKSFSVTVTG-KG----LPNGAIV--S 736 (753)
Q Consensus 672 ~~~~~rtvtn~~~~~~~y~~~~--~~~~g~~~v~v~------p~~~~~~~~~~~~~~~vt~~~-~~----~~~~~~~--~ 736 (753)
..+++.+|||+|+......+.+ ..|.. .+..- =.++.+ ++||+++++++++. .. ...+.|+ -
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~--~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~ 761 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPV--VPGVPEKQLVGFDRVHT-ASGRSTETEIVVDPCKHLSVANEEGKRVLPL 761 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCcc--CCCCcchhccCcEeEee-CCCCEEEEEEEeCchHHceEEcCCCcEEEeC
Confidence 5788899999998876666653 22322 11111 123455 78999999999976 42 1224443 3
Q ss_pred EEEEEE--CCCeEEEccc
Q 044745 737 TSLMWS--DGNHRVRSPI 752 (753)
Q Consensus 737 G~~~~~--~~~~~v~~p~ 752 (753)
|...+. +..|.|+.++
T Consensus 762 G~y~l~vG~~~~~~~~~~ 779 (779)
T PLN03080 762 GDHVLMLGDLEHSLSIEI 779 (779)
T ss_pred ccEEEEEeCCccceEEeC
Confidence 554443 5667777653
No 89
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=48.50 E-value=19 Score=33.97 Aligned_cols=82 Identities=21% Similarity=0.194 Sum_probs=57.0
Q ss_pred CCCCCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCc-ccc------------cccccccEE
Q 044745 393 FDPQLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEF-NKV------------SSVVSLPAV 454 (753)
Q Consensus 393 ~~~~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~-~~~------------~~~~~~p~~ 454 (753)
++..+|.. .-+.....+.+.+++| ..|..+++++||..+| +.++.. +.. .+...+|++
T Consensus 72 dPp~aC~e---lrN~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aii-itd~~~~~~sf~~YveMI~D~sq~~AniPa~ 147 (193)
T KOG3920|consen 72 DPPHACEE---LRNEIFAPDSVALMERGECSFLVKTLNGEKAGATAII-ITDSQNYEYSFHQYVEMIPDESQDRANIPAV 147 (193)
T ss_pred CChhHHHH---HhhcccCCCcEEEEecCCceeeehhhhhhhcCceEEE-EecCCCCchhHHHHHHhcCcccccccCCceE
Confidence 35667874 3445667889999998 6788999999999998 655443 211 245678999
Q ss_pred EeehhhHHHHHHHHhcCCCCeEEE
Q 044745 455 ALNEDNFNSIYSYLKSTKKPEANI 478 (753)
Q Consensus 455 ~i~~~~g~~l~~~~~~~~~~~~~i 478 (753)
++-..+|..+..-++.-...-+.|
T Consensus 148 fllg~~Gy~ir~sL~r~~r~ha~i 171 (193)
T KOG3920|consen 148 FLLGVTGYYIRVSLKRYFRDHAKI 171 (193)
T ss_pred EEeccceEEEehhHHHhCCccEEE
Confidence 998888877666665544443433
No 90
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=44.40 E-value=1.9e+02 Score=24.36 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=33.1
Q ss_pred eeEEEEEEEEecCCCC-eeEEEEEecCCceEEEEEEcCeE-EEeeCCcEEEEEEEEEec
Q 044745 671 FTINFPRTVTNVGLAN-STYKAKILQNSKIVSIKVVPESL-SFKSLNEKKSFSVTVTGK 727 (753)
Q Consensus 671 ~~~~~~rtvtn~~~~~-~~y~~~~~~~~g~~~v~v~p~~~-~~~~~~~~~~~~vt~~~~ 727 (753)
...+++.+|+|.|... ..+.+.+..... .+ .-..+ .+ ++|+++++++++...
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~~~--~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLDGN--SV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEETTE--EE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEECCc--ee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 4778888999999764 567777665532 33 11122 55 789999888888887
No 91
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=41.98 E-value=37 Score=32.62 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=27.6
Q ss_pred CCccccccccEEEEee------------------------cchhHHHHhcCceEEEEecc
Q 044745 404 CIDSRLAKGKIVICQS------------------------FDGFNEVHKAGAEGSVSLND 439 (753)
Q Consensus 404 ~~~~~~~~gkiv~~~~------------------------~~k~~~~~~~Ga~g~i~~~~ 439 (753)
.+..-|++||||++.. ..|...+...||.|+| +..
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi-~v~ 100 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGAL-IVH 100 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEE-EEe
Confidence 4445689999999874 1388899999999999 444
No 92
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=41.57 E-value=1.6e+02 Score=24.98 Aligned_cols=46 Identities=20% Similarity=0.141 Sum_probs=30.3
Q ss_pred eEEEEEEEEecCCCCeeEEEEEecCC-ceEEEEEEcCeEEEeeCCcEEEEEEEE
Q 044745 672 TINFPRTVTNVGLANSTYKAKILQNS-KIVSIKVVPESLSFKSLNEKKSFSVTV 724 (753)
Q Consensus 672 ~~~~~rtvtn~~~~~~~y~~~~~~~~-g~~~v~v~p~~~~~~~~~~~~~~~vt~ 724 (753)
...+..+++|.|....++++.-..-. + .|.++++ ++|++.++.+.+
T Consensus 19 ~g~l~l~l~N~g~~~~~~~v~~~~y~~~------~~~~~~v-~ag~~~~~~w~l 65 (89)
T PF05506_consen 19 TGNLRLTLSNPGSAAVTFTVYDNAYGGG------GPWTYTV-AAGQTVSLTWPL 65 (89)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCcCCC------CCEEEEE-CCCCEEEEEEee
Confidence 34778899999987777766542211 2 3555666 678887776655
No 93
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=40.44 E-value=1e+02 Score=22.59 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=24.5
Q ss_pred EEEecCCCCeeEEEEEecCCceEEEEEEcCeEEEeeCCcEEEEEEEE
Q 044745 678 TVTNVGLANSTYKAKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTV 724 (753)
Q Consensus 678 tvtn~~~~~~~y~~~~~~~~g~~~v~v~p~~~~~~~~~~~~~~~vt~ 724 (753)
+++|.|+.+-... .+...-|-..+. .+.=.+ ++||+..++|++
T Consensus 3 ~~~N~g~~~L~I~-~v~tsCgCt~~~--~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 3 EFTNTGDSPLVIT-DVQTSCGCTTAE--YSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEECCCCcEEEE-EeeEccCCEEee--CCcceE-CCCCEEEEEEEC
Confidence 6789987654322 233333313333 333334 789999998874
No 94
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=38.58 E-value=90 Score=26.37 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=14.9
Q ss_pred CeEEEeeCCcEEEEEEEEEeccCCCCCe
Q 044745 707 ESLSFKSLNEKKSFSVTVTGKGLPNGAI 734 (753)
Q Consensus 707 ~~~~~~~~~~~~~~~vt~~~~~~~~~~~ 734 (753)
...++ ++||+++|+.++.......|.|
T Consensus 52 ~~~~l-~pGe~~~~~~~~~~~~~~~G~Y 78 (82)
T PF12690_consen 52 QEETL-EPGESLTYEETWDLKDLSPGEY 78 (82)
T ss_dssp EEEEE--TT-EEEEEEEESS----SEEE
T ss_pred eEEEE-CCCCEEEEEEEECCCCCCCceE
Confidence 34566 7899999998887765333333
No 95
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=37.44 E-value=73 Score=38.91 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=36.5
Q ss_pred eeEEEEEEEEecCCCCeeEEEEE--ecCCceEEEEEEcC-------eEEEeeCCcEEEEEEEEEecc
Q 044745 671 FTINFPRTVTNVGLANSTYKAKI--LQNSKIVSIKVVPE-------SLSFKSLNEKKSFSVTVTGKG 728 (753)
Q Consensus 671 ~~~~~~rtvtn~~~~~~~y~~~~--~~~~g~~~v~v~p~-------~~~~~~~~~~~~~~vt~~~~~ 728 (753)
...+++.+|||+|..+..-.+++ ..|.+ .+. .|. ++.+ ++||++++++++....
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~--~~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~~ 729 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTA--SMS-RPVKELKGFEKIML-KPGETQTVSFPIDIEA 729 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCC--CCC-CHHHhccCceeEeE-CCCCeEEEEEeecHHH
Confidence 46889999999998765555543 33433 221 232 3455 8999999999998764
No 96
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=36.54 E-value=66 Score=34.18 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=50.2
Q ss_pred eeecccccceeccccccCCCC------CCH----------HHHHHHHHHHHHCCCcEEEeecCCCCC-----------CC
Q 044745 245 ARGGVPSARIAAYKVCSPELG------CAE----------TAILGAFDDAIADGVDIITISLGGQNT-----------LN 297 (753)
Q Consensus 245 ~~GvAP~A~l~~~kv~~~~~g------~~~----------~~i~~ai~~a~~~gvdVIn~SlG~~~~-----------~~ 297 (753)
++-+||-++|-+...+|.... +.. +.-+.-+++|+++|.+||+ |.|...- +.
T Consensus 137 ~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Dis~ 215 (430)
T KOG2018|consen 137 FSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADISE 215 (430)
T ss_pred HHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEe-ccCccccCCCceeehhhccc
Confidence 467899999888777765211 111 1123456789999999996 6665421 23
Q ss_pred CcccHHHHHHHHHh-----hCCcEEEEecC
Q 044745 298 FTQDVIAIGSFHAM-----AKGVLTLHSAG 322 (753)
Q Consensus 298 ~~~~~~~~a~~~a~-----~~Gi~vV~AAG 322 (753)
...||+++...+-. ..||.||+|+-
T Consensus 216 t~~DPlsR~vRrrLrk~GI~~GIpVVFS~E 245 (430)
T KOG2018|consen 216 TEEDPLSRSVRRRLRKRGIEGGIPVVFSLE 245 (430)
T ss_pred cccCcHHHHHHHHHHHhccccCCceEEecC
Confidence 34788888776532 46888999854
No 97
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=35.83 E-value=34 Score=25.67 Aligned_cols=10 Identities=20% Similarity=0.129 Sum_probs=6.0
Q ss_pred CccchhHHHH
Q 044745 1 MAKNGFLLFN 10 (753)
Q Consensus 1 m~~~~~~~~~ 10 (753)
||||.+...+
T Consensus 1 MmKk~i~~i~ 10 (48)
T PRK10081 1 MVKKTIAAIF 10 (48)
T ss_pred ChHHHHHHHH
Confidence 7777665433
No 98
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=33.22 E-value=41 Score=24.27 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=18.6
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhc
Q 044745 558 AAYVKSFHPDWSPSAIKSAIMTT 580 (753)
Q Consensus 558 aALl~~~~P~ls~~~ik~~L~~T 580 (753)
+--|++.+|+|++..|+..|...
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~ 27 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQAN 27 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHc
Confidence 34578899999999999999764
No 99
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=32.96 E-value=3.3e+02 Score=23.75 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=36.2
Q ss_pred eeEEEEEEEEecCCCC-eeEE-----EEEecCCceE---EEEEEcCeEEEeeCCcEEEEEEEEEecc
Q 044745 671 FTINFPRTVTNVGLAN-STYK-----AKILQNSKIV---SIKVVPESLSFKSLNEKKSFSVTVTGKG 728 (753)
Q Consensus 671 ~~~~~~rtvtn~~~~~-~~y~-----~~~~~~~g~~---~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 728 (753)
...++..+++|..+.. .+-+ .+++.+ | + ....+...+++ +++++.++++++.+.+
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~yt-G-~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYT-G-LTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEECT-T-TEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEEC-C-cccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 4778888999998876 5522 234444 4 3 35566666777 8899999999998876
No 100
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=32.55 E-value=74 Score=27.94 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=28.1
Q ss_pred eEEEEEEEEecCCCCee----EEEEEec---------CCceEEEEEEcC--eEEEeeCCcEEEEEEE
Q 044745 672 TINFPRTVTNVGLANST----YKAKILQ---------NSKIVSIKVVPE--SLSFKSLNEKKSFSVT 723 (753)
Q Consensus 672 ~~~~~rtvtn~~~~~~~----y~~~~~~---------~~g~~~v~v~p~--~~~~~~~~~~~~~~vt 723 (753)
..+++.+|+|.|+.+-. |+.--.. --| ..+.+ |+ +++| ++|+++++++.
T Consensus 19 r~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G-~RLdI-paGTavRF-EPG~~k~V~LV 82 (101)
T cd00407 19 REAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYG-MRLDI-PAGTAVRF-EPGEEKEVELV 82 (101)
T ss_pred CCEEEEEEEeCCCcceEEccccchhhcCccccccHHHccc-ceecc-cCCCeEEE-CCCCeEEEEEE
Confidence 44677899999987532 2221001 113 44444 32 5778 78999877654
No 101
>COG5510 Predicted small secreted protein [Function unknown]
Probab=31.53 E-value=51 Score=24.13 Aligned_cols=7 Identities=43% Similarity=0.548 Sum_probs=3.9
Q ss_pred CccchhH
Q 044745 1 MAKNGFL 7 (753)
Q Consensus 1 m~~~~~~ 7 (753)
||||..+
T Consensus 1 mmk~t~l 7 (44)
T COG5510 1 MMKKTIL 7 (44)
T ss_pred CchHHHH
Confidence 6666444
No 102
>PRK09810 entericidin A; Provisional
Probab=29.83 E-value=47 Score=24.14 Aligned_cols=9 Identities=33% Similarity=0.357 Sum_probs=5.8
Q ss_pred CccchhHHH
Q 044745 1 MAKNGFLLF 9 (753)
Q Consensus 1 m~~~~~~~~ 9 (753)
||||.+.++
T Consensus 1 mMkk~~~l~ 9 (41)
T PRK09810 1 MMKRLIVLV 9 (41)
T ss_pred ChHHHHHHH
Confidence 777765544
No 103
>PRK13202 ureB urease subunit beta; Reviewed
Probab=29.39 E-value=86 Score=27.63 Aligned_cols=48 Identities=8% Similarity=0.125 Sum_probs=27.6
Q ss_pred EEEEEEEEecCCCCe----eEEEEEec---------CCceEEEEEEcC--eEEEeeCCcEEEEEEE
Q 044745 673 INFPRTVTNVGLANS----TYKAKILQ---------NSKIVSIKVVPE--SLSFKSLNEKKSFSVT 723 (753)
Q Consensus 673 ~~~~rtvtn~~~~~~----~y~~~~~~---------~~g~~~v~v~p~--~~~~~~~~~~~~~~vt 723 (753)
.+++.+|+|.|+.+- -|+.--.. --| ..+.+ |+ .++| ++|+++++++.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G-~RLdI-paGTavRF-EPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHG-YRLDI-PAATAVRF-EPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcC-ccccc-CCCCeEEE-CCCCeEEEEEE
Confidence 467789999998753 23221001 113 44444 22 4777 78999877654
No 104
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=29.37 E-value=85 Score=27.53 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=27.9
Q ss_pred eEEEEEEEEecCCCCe----eEEEEEec---------CCceEEEEEEcC--eEEEeeCCcEEEEEEE
Q 044745 672 TINFPRTVTNVGLANS----TYKAKILQ---------NSKIVSIKVVPE--SLSFKSLNEKKSFSVT 723 (753)
Q Consensus 672 ~~~~~rtvtn~~~~~~----~y~~~~~~---------~~g~~~v~v~p~--~~~~~~~~~~~~~~vt 723 (753)
..+++.+|+|.|+.+- -|+.--.. --| ..+.+ |+ .++| ++|+++++++.
T Consensus 19 r~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G-~RLdI-paGTavRF-EPG~~k~V~LV 82 (101)
T TIGR00192 19 RKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFG-MRLDI-PSGTAVRF-EPGEEKSVELV 82 (101)
T ss_pred CcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcC-ccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 4467789999998753 22221000 113 44444 32 4777 78999977654
No 105
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=28.85 E-value=3e+02 Score=34.09 Aligned_cols=65 Identities=15% Similarity=0.105 Sum_probs=35.0
Q ss_pred CCCcEEeeeCCCCceeEEEEEEEEecC-CCCeeEEEEEec-----CCceEEEEEEcCeEEEeeCCcE-EEEEEEEEecc
Q 044745 657 NYPSMAAQVSPGKSFTINFPRTVTNVG-LANSTYKAKILQ-----NSKIVSIKVVPESLSFKSLNEK-KSFSVTVTGKG 728 (753)
Q Consensus 657 n~ps~~~~~~~~~~~~~~~~rtvtn~~-~~~~~y~~~~~~-----~~g~~~v~v~p~~~~~~~~~~~-~~~~vt~~~~~ 728 (753)
.-++..+.... + +++.||+-.| +...+-++.+.. -+| .+..-...+|+| ++||+ |+++|++--++
T Consensus 405 e~~~Y~V~En~---G--tV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG-~DY~~~sGTLtF-~PGEt~KtItV~IIDDd 476 (928)
T TIGR00845 405 EPGHYTCLENC---G--TVALTVVRRGGDLTNTVYVDYRTEDGTANAG-SDYEFTEGTLVF-KPGETQKEFRIGIIDDD 476 (928)
T ss_pred cCCeEEEeecC---c--EEEEEEEEccCCCCceEEEEEEccCCccCCC-CCccccCceEEE-CCCceEEEEEEEEccCC
Confidence 33455555432 2 3444554444 334445554432 335 566666778999 67776 66666665443
No 106
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=28.08 E-value=62 Score=27.71 Aligned_cols=26 Identities=27% Similarity=0.315 Sum_probs=18.0
Q ss_pred CccchhHHHHHHHHHHHHHHhhhccc
Q 044745 1 MAKNGFLLFNFLSFILFLPMSILGGA 26 (753)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (753)
||||..+.++++.+++++++..+...
T Consensus 1 m~kk~~~~ll~i~~i~~l~li~~~~~ 26 (97)
T COG1930 1 MSKKHMLNLLAIGIILALPLIPFSFV 26 (97)
T ss_pred CchHHHHHHHHHHHHHHHHHHHheec
Confidence 88998887776666666666655533
No 107
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=27.60 E-value=28 Score=16.01 Aligned_cols=6 Identities=50% Similarity=0.822 Sum_probs=4.0
Q ss_pred cccCCC
Q 044745 494 DFSSRG 499 (753)
Q Consensus 494 ~fSs~G 499 (753)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 108
>PRK15019 CsdA-binding activator; Provisional
Probab=27.48 E-value=55 Score=31.05 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=27.4
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 044745 542 NVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKS 575 (753)
Q Consensus 542 ~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~ 575 (753)
..+.|.| =|+.|-|.+|||.+.+-+.+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444555 48999999999999999999999876
No 109
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=26.37 E-value=60 Score=30.46 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=28.0
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHH
Q 044745 542 NVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSA 576 (753)
Q Consensus 542 ~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~ 576 (753)
..+.|.| =|+.|-|.+|||.+.+-+.+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 3445555 489999999999999999999998743
No 110
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=25.22 E-value=57 Score=25.29 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=22.4
Q ss_pred ceeeccccchhHHHHHHHH------HHHhhCCCCCHHHHHHHHH
Q 044745 541 FNVVSGTSMSCPHAAGVAA------YVKSFHPDWSPSAIKSAIM 578 (753)
Q Consensus 541 y~~~sGTSmAaP~VAG~aA------Ll~~~~P~ls~~~ik~~L~ 578 (753)
--.+.||=+..=.|....+ -+++.||+|++++|+++|.
T Consensus 11 ~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 11 QPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp --EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred cceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 3455666665555554432 3566799999999999984
No 111
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=24.87 E-value=2.1e+02 Score=29.37 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=35.2
Q ss_pred EEEEEEecCCCCeeEEEEE---ecC---Cc---------eEEEEEEcCeEEEeeCCcEEEEEEEEEe
Q 044745 675 FPRTVTNVGLANSTYKAKI---LQN---SK---------IVSIKVVPESLSFKSLNEKKSFSVTVTG 726 (753)
Q Consensus 675 ~~rtvtn~~~~~~~y~~~~---~~~---~g---------~~~v~v~p~~~~~~~~~~~~~~~vt~~~ 726 (753)
...+|.|.|+....+++.+ ..| .+ +-.+-++|..|.+ ++|+++.|.|.-..
T Consensus 35 ~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg 100 (234)
T PRK15308 35 TSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQ 100 (234)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcC
Confidence 4468889998887777753 222 01 0267888999999 88888888766544
No 112
>PRK13205 ureB urease subunit beta; Reviewed
Probab=24.71 E-value=1e+02 Score=29.02 Aligned_cols=49 Identities=6% Similarity=0.155 Sum_probs=28.5
Q ss_pred eEEEEEEEEecCCCCe----eEEEEEecC---------CceEEEEEEcC--eEEEeeCCcEEEEEEE
Q 044745 672 TINFPRTVTNVGLANS----TYKAKILQN---------SKIVSIKVVPE--SLSFKSLNEKKSFSVT 723 (753)
Q Consensus 672 ~~~~~rtvtn~~~~~~----~y~~~~~~~---------~g~~~v~v~p~--~~~~~~~~~~~~~~vt 723 (753)
..+++.+|+|.|+.+- -|+.--..+ -| ..+.| |+ .++| ++|+++++++.
T Consensus 19 R~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G-~RLdI-PAGTAVRF-EPGe~ktV~LV 82 (162)
T PRK13205 19 REAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYG-FRLDI-PSGTAVRL-EPGDARTVNLV 82 (162)
T ss_pred CcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcC-ccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 4567789999998753 233210111 13 44444 32 4677 77899887764
No 113
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=23.88 E-value=58 Score=22.36 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=10.5
Q ss_pred chhHHHHHHHHHH
Q 044745 549 MSCPHAAGVAAYV 561 (753)
Q Consensus 549 mAaP~VAG~aALl 561 (753)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 4899999997743
No 114
>PRK13201 ureB urease subunit beta; Reviewed
Probab=23.63 E-value=1.1e+02 Score=28.10 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=28.0
Q ss_pred eEEEEEEEEecCCCCe----eEEEEEec---------CCceEEEEEEcC--eEEEeeCCcEEEEEEE
Q 044745 672 TINFPRTVTNVGLANS----TYKAKILQ---------NSKIVSIKVVPE--SLSFKSLNEKKSFSVT 723 (753)
Q Consensus 672 ~~~~~rtvtn~~~~~~----~y~~~~~~---------~~g~~~v~v~p~--~~~~~~~~~~~~~~vt 723 (753)
..+++.+|+|.|+.+- -|+.--.. --| ..+.+ |+ .++| ++|+++++++.
T Consensus 19 r~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G-~RLdI-PAGTAVRF-EPG~~k~V~LV 82 (136)
T PRK13201 19 HPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYG-KHLDI-PAGAAVRF-EPGDKKEVQLV 82 (136)
T ss_pred CCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcC-ccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 4467789999998753 22221000 113 44444 32 4777 77899877664
No 115
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=23.00 E-value=75 Score=29.79 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=27.4
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 044745 542 NVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKS 575 (753)
Q Consensus 542 ~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~ 575 (753)
..+.|.| =|+.|-|.+|||.+.+-+.||++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444555 58999999999999999999999864
No 116
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.92 E-value=4.7e+02 Score=25.72 Aligned_cols=66 Identities=21% Similarity=0.187 Sum_probs=41.6
Q ss_pred eeEEEEEEEEecCCCCeeEEEEEec---C-CceEEEEEEcCeE---EEeeCCcEEEEEEEEEeccCCCCCeEEEEEEE
Q 044745 671 FTINFPRTVTNVGLANSTYKAKILQ---N-SKIVSIKVVPESL---SFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMW 741 (753)
Q Consensus 671 ~~~~~~rtvtn~~~~~~~y~~~~~~---~-~g~~~v~v~p~~~---~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~ 741 (753)
...+++-++-|+|+. .-|.+++.. | .. +++.=-..+. ++ ++|++.+..+++++.. .|.+.++..+.
T Consensus 38 ~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~-F~lvsG~~s~~~~~i-~pg~~vsh~~vv~p~~--~G~f~~~~a~V 110 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSS-AAYDVKLTDDSFPPED-FELVSGSLSASWERI-PPGENVSHSYVVRPKK--SGYFNFTPAVV 110 (181)
T ss_pred cEEEEEEEEEECCCC-eEEEEEEECCCCCccc-cEeccCceEEEEEEE-CCCCeEEEEEEEeeee--eEEEEccCEEE
Confidence 478899999999985 557777655 2 22 4431111111 22 7899888888888764 45566655444
No 117
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=22.51 E-value=3.1e+02 Score=24.45 Aligned_cols=41 Identities=17% Similarity=0.387 Sum_probs=33.5
Q ss_pred cccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCC
Q 044745 250 PSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQ 293 (753)
Q Consensus 250 P~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~ 293 (753)
++++|+.+--| .||....++.-+++..+.|+|+|-+|-...
T Consensus 36 ~~~elvgf~~C---gGCpg~~~~~~~~~l~~~~~d~IHlssC~~ 76 (107)
T PF08821_consen 36 EDVELVGFFTC---GGCPGRKLVRRIKKLKKNGADVIHLSSCMV 76 (107)
T ss_pred CCeEEEEEeeC---CCCChhHHHHHHHHHHHCCCCEEEEcCCEe
Confidence 46788776444 669999999999999999999999987755
No 118
>PRK13203 ureB urease subunit beta; Reviewed
Probab=22.43 E-value=2e+02 Score=25.36 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=27.9
Q ss_pred eEEEEEEEEecCCCCee----EEEEE---------ecCCceEEEEEEcC--eEEEeeCCcEEEEEEE
Q 044745 672 TINFPRTVTNVGLANST----YKAKI---------LQNSKIVSIKVVPE--SLSFKSLNEKKSFSVT 723 (753)
Q Consensus 672 ~~~~~rtvtn~~~~~~~----y~~~~---------~~~~g~~~v~v~p~--~~~~~~~~~~~~~~vt 723 (753)
..+++.+|+|.|+.+-. |+.-- +.--| ..+.+ |+ .++| ++|+++++++.
T Consensus 19 r~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G-~RLdI-paGTavRF-EPG~~k~V~LV 82 (102)
T PRK13203 19 RETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARG-MRLNI-PAGTAVRF-EPGQTREVELV 82 (102)
T ss_pred CCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcC-ccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 44677899999987532 22210 00113 44444 32 4777 78999877654
No 119
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=21.83 E-value=1.2e+02 Score=21.86 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=20.7
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhc
Q 044745 557 VAAYVKSFHPDWSPSAIKSAIMTT 580 (753)
Q Consensus 557 ~aALl~~~~P~ls~~~ik~~L~~T 580 (753)
.+..|++.+|+++...|+..|...
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~ 28 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEAN 28 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHc
Confidence 456788999999999999999864
No 120
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=21.80 E-value=77 Score=29.83 Aligned_cols=32 Identities=16% Similarity=0.066 Sum_probs=25.8
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 044745 543 VVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKS 575 (753)
Q Consensus 543 ~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~ 575 (753)
.+.|=|= |++|.|.+|++++.+-..||++|..
T Consensus 73 ~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 73 HFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 3444443 7999999999999999999999853
No 121
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=21.49 E-value=87 Score=28.79 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=26.3
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHHH
Q 044745 543 VVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSA 576 (753)
Q Consensus 543 ~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~ 576 (753)
.+.|.|= |+.|-|++||+.+.+-+.+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4555554 68999999999999999999998653
No 122
>PRK13204 ureB urease subunit beta; Reviewed
Probab=20.41 E-value=1.4e+02 Score=28.29 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=28.3
Q ss_pred eEEEEEEEEecCCCCe----eEEEEEec---------CCceEEEEEEcC--eEEEeeCCcEEEEEEE
Q 044745 672 TINFPRTVTNVGLANS----TYKAKILQ---------NSKIVSIKVVPE--SLSFKSLNEKKSFSVT 723 (753)
Q Consensus 672 ~~~~~rtvtn~~~~~~----~y~~~~~~---------~~g~~~v~v~p~--~~~~~~~~~~~~~~vt 723 (753)
..+++.+|+|.|+.+- -|+.--.. --| ..+.+ |+ .++| ++|+++++++.
T Consensus 42 r~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G-~RLdI-PAGTAVRF-EPG~~k~V~LV 105 (159)
T PRK13204 42 RPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFG-LRLDI-PANTAVRF-EPGDEKEVTLV 105 (159)
T ss_pred CcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcC-ccccc-CCCCeEeE-CCCCeeEEEEE
Confidence 4567789999998753 22221001 113 44444 32 4777 78999877654
Done!