Citrus Sinensis ID: 044746

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGREEV
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHEEccccccccHHHHHHHHHHHHHHccccccccccEEEEEEEcccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHEcccccccHHcHccccEEccccccEEEEEEEEcccccccHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
mekprnrgstrfITRTIDKSLdamemdkpirftspqrmiaadnfsnlvgsedtETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIvhydikpesvlldenffpkaadfglaklynrehthitstgrrrtpgceapelwmpysvtqkcdvfsFGMLLFEVVGRRRNLEKEISEGQewfpkwgreev
Flexible Loop (DISEMBL)
mekprnrgstrfitrtidksldameMDKPIRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRehthitstgrrrtpgCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEkeisegqewfpkwgreev
Low Complexity Region (SEG)
MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGREEV
Disordered region (IsUnstruct)
*************************************MIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLE********WF********
Disordered Region (DISOPRED)
*****NR*STRFITRTIDKSLDAM****PIRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR**********EWFPKWGREEV
Disordered Region (DISEMBL)
*********TRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH********TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGREEV
Disordered Region (DISPRO)
*EKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGREEV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGREEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q9FLV4	872	G-type lectin S-receptor-	no	no	0.940	0.217	0.398	2e-31
O64477	828	G-type lectin S-receptor-	no	no	0.628	0.153	0.476	3e-28
Q8RWZ5	821	G-type lectin S-receptor-	no	no	0.569	0.140	0.474	3e-26
Q39203	797	G-type lectin S-receptor-	no	no	0.589	0.149	0.460	2e-24
Q9XID3	829	G-type lectin S-receptor-	no	no	0.594	0.144	0.458	3e-24
Q9FID6	813	Probable receptor-like pr	no	no	0.584	0.145	0.413	1e-22
Q94C25	452	Probable receptor-like pr	no	no	0.599	0.267	0.385	4e-22
Q39202	832	G-type lectin S-receptor-	no	no	0.826	0.200	0.342	2e-21
O65238	872	G-type lectin S-receptor-	no	no	0.495	0.114	0.465	2e-21
Q9ZRF9	540	Probable LRR receptor-lik	no	no	0.792	0.296	0.341	6e-21

>sp|Q9FLV4|Y5248_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana GN=At5g24080 PE=2 SV=1

 Score =  135 bits (339), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/206 (39%), Positives = 115/206 (55%), Gaps = 16/206 (7%)

Query: 8   GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV-----GSEDT------ETY 56
           G T    + +D++L   E +    F +    I + +  NLV      SED+      E  
Sbjct: 551 GETLVAVKRLDRALSHGERE----FITEVNTIGSMHHMNLVRLCGYCSEDSHRLLVYEYM 606

Query: 57  IKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE 116
           I G L    F      N+L +    EI V+T++GIAY HE+CR +I+H DIKPE++LLD+
Sbjct: 607 INGSLDKWIFSSEQTANLLDWRTRFEIAVATAQGIAYFHEQCRNRIIHCDIKPENILLDD 666

Query: 117 NFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           NF PK +DFGLAK+  REH+H+  T  R T G  APE      +T K DV+S+GMLL E+
Sbjct: 667 NFCPKVSDFGLAKMMGREHSHVV-TMIRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEI 725

Query: 177 VGRRRNLEKEISEGQEWFPKWGREEV 202
           VG RRNL+        ++P W  +E+
Sbjct: 726 VGGRRNLDMSYDAEDFFYPGWAYKEL 751

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|O64477|Y2913_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1

 Score =  124 bits (312), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 86/128 (67%), Gaps = 1/128 (0%)

Query: 71  KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL 130
           +K +LG+    +I + T++G+AYLH+ECR  I+H DIKPE++LLD  F PK ADFGLAKL
Sbjct: 584 EKIVLGWKLRFQIALGTARGLAYLHDECRDCIIHCDIKPENILLDSQFCPKVADFGLAKL 643

Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG 190
             R+ + + +T  R T G  APE     ++T K DV+S+GM+LFE+V  RRN E+  +E 
Sbjct: 644 VGRDFSRVLTT-MRGTRGYLAPEWISGVAITAKADVYSYGMMLFELVSGRRNTEQSENEK 702

Query: 191 QEWFPKWG 198
             +FP W 
Sbjct: 703 VRFFPSWA 710

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8RWZ5|SD25_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1

 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 81/116 (69%), Gaps = 1/116 (0%)

Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST 141
            I + T+KG+AYLHE+C  +IVH DIKPE++LLD+NF  K +DFGLAKL  RE +H+ +T
Sbjct: 594 NIALGTAKGLAYLHEDCDARIVHCDIKPENILLDDNFNAKVSDFGLAKLMTREQSHVFTT 653

Query: 142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKW 197
             R T G  APE    Y++++K DV+S+GM+L E++G R+N +   +  +  FP +
Sbjct: 654 -MRGTRGYLAPEWITNYAISEKSDVYSYGMVLLELIGGRKNYDPSETSEKCHFPSF 708

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q39203|SD22_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 OS=Arabidopsis thaliana GN=SD22 PE=1 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 79/128 (61%), Gaps = 9/128 (7%)

Query: 83  IEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTG 142
           I + T+KGIAYLHE CR  I+H DIKPE++LLD ++  K +DFGLAKL  R+ + + +T 
Sbjct: 562 IALGTAKGIAYLHEGCRDCIIHCDIKPENILLDSDYNAKVSDFGLAKLLGRDFSRVLAT- 620

Query: 143 RRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNL--------EKEISEGQEWF 194
            R T G  APE      +T K DV+SFGM L E++G RRN+        EKE    + +F
Sbjct: 621 MRGTWGYVAPEWISGLPITTKADVYSFGMTLLELIGGRRNVIVNSDTLGEKETEPEKWFF 680

Query: 195 PKWGREEV 202
           P W   E+
Sbjct: 681 PPWAAREI 688

Serine/threonine-protein kinase.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9XID3|Y1343_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 OS=Arabidopsis thaliana GN=At1g34300 PE=1 SV=1

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 72/120 (60%)

Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST 141
            I + T+KGI YLHEECR  IVH DIKPE++L+D+NF  K +DFGLAKL N +      +
Sbjct: 584 NIALGTAKGITYLHEECRDCIVHCDIKPENILVDDNFAAKVSDFGLAKLLNPKDNRYNMS 643

Query: 142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGREE 201
             R T G  APE      +T K DV+S+GM+L E+V  +RN +       + F  W  EE
Sbjct: 644 SVRGTRGYLAPEWLANLPITSKSDVYSYGMVLLELVSGKRNFDVSEKTNHKKFSIWAYEE 703

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FID6|Y5392_ARATH Probable receptor-like protein kinase At5g39020 OS=Arabidopsis thaliana GN=At5g39020 PE=2 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 76/121 (62%), Gaps = 3/121 (2%)

Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT 139
           L  I +  ++G+ YLH  C+ +IVH+DIKP+++LLD+NF PK ADFGLAKL  +  + ++
Sbjct: 593 LYGIALGIARGLEYLHYGCKTRIVHFDIKPQNILLDDNFCPKVADFGLAKLCEKRESILS 652

Query: 140 STGRRRTPGCEAPELW--MPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQ-EWFPK 196
               R T G  APE+   M   ++ K DV+S+GML+ +++G R  +E     G   +FP 
Sbjct: 653 LIDTRGTIGYIAPEVVSRMYGGISHKSDVYSYGMLVLDMIGARNKVETTTCNGSTAYFPD 712

Query: 197 W 197
           W
Sbjct: 713 W 713

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q94C25|Y5005_ARATH Probable receptor-like protein kinase At5g20050 OS=Arabidopsis thaliana GN=At5g20050 PE=2 SV=1

 Score =  104 bits (260), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 81/127 (63%), Gaps = 6/127 (4%)

Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L + Q  ++ +  +K +AYLH +CR KI+H D+KPE++LLDENF     DFGL+KL  R+
Sbjct: 205 LSWEQRYQVAIDVAKALAYLHHDCRSKILHLDVKPENILLDENFRAVVTDFGLSKLIARD 264

Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQ--- 191
            + +  T  R T G  APE  + + +++K DV+S+G++L E++G RR++ +   +     
Sbjct: 265 ESRVL-TDIRGTRGYLAPEWLLEHGISEKSDVYSYGIVLLEMIGGRRSISRVEVKETKKK 323

Query: 192 --EWFPK 196
             E+FP+
Sbjct: 324 KLEYFPR 330

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q39202|RLK1_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 8/175 (4%)

Query: 19  KSLDAMEMDKPIRFTSPQRMIAADNFSNLV------GSEDTETYIKGFLAMGPFY-LLCK 71
           K LD +++D    F +  ++I   +  NLV          ++  +  FL  G     L +
Sbjct: 563 KKLDRLDLDNEKEFKNEVKVIGQIHHKNLVRLIGFCNEGQSQMIVYEFLPQGTLANFLFR 622

Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           +    +   + I V+ ++GI YLHEEC ++I+H DIKP+++LLDE + P+ +DFGLAKL 
Sbjct: 623 RPRPSWEDRKNIAVAIARGILYLHEECSEQIIHCDIKPQNILLDEYYTPRISDFGLAKLL 682

Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE 186
               T+ T T  R T G  APE +    +T K DV+S+G++L E+V  ++ ++ E
Sbjct: 683 LMNQTY-TLTNIRGTKGYVAPEWFRNSPITSKVDVYSYGVMLLEIVCCKKAVDLE 736

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65238|Y5537_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 OS=Arabidopsis thaliana GN=At5g35370 PE=2 SV=2

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 73/101 (72%), Gaps = 1/101 (0%)

Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST 141
           +I + T++G+AYLH  C QKI+H D+KPE++LL ++F PK +DFGL+KL N+E + + +T
Sbjct: 615 DIALGTARGLAYLHSGCDQKIIHCDVKPENILLHDHFQPKISDFGLSKLLNQEESSLFTT 674

Query: 142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRN 182
             R T G  APE     ++++K DV+S+GM+L E+V  R+N
Sbjct: 675 -MRGTRGYLAPEWITNAAISEKADVYSYGMVLLELVSGRKN 714

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZRF9|RPK1_ARATH Probable LRR receptor-like serine/threonine-protein kinase RPK1 OS=Arabidopsis thaliana GN=RPK1 PE=1 SV=1

 Score =  100 bits (249), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 7/167 (4%)

Query: 34  SPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPFYLLCK---KNILGFGQLREIEVST 87
           S   M+   N   L+G   +ET    I  +L+ G      K   K  + +  L +I +  
Sbjct: 307 SALEMVRHPNLVMLIGYHASETEMFLIYNYLSGGNLQDFIKERSKAAIEWKVLHKIALDV 366

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           ++ ++YLHE+C  K++H DIKP ++LLD N+    +DFGL+KL     +H+T TG   T 
Sbjct: 367 ARALSYLHEQCSPKVLHRDIKPSNILLDNNYNAYLSDFGLSKLLGTSQSHVT-TGVAGTF 425

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWF 194
           G  APE  M   V++K DV+S+G++L E++  +R L+   S  +  F
Sbjct: 426 GYVAPEYAMTCRVSEKADVYSYGIVLLELISDKRALDPSFSSHENGF 472

Involved in the main abscisic acid-mediated (ABA) signaling pathway and in early ABA perception. Together with RPK2, required for pattern formation along the radial axis (e.g. the apical embryonic domain cell types that generate cotyledon primordia), and the apical-basal axis (e.g. differentiation of the basal pole during early embryogenesis).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
356532654	418	PREDICTED: G-type lectin S-receptor-like	0.930	0.449	0.459	2e-53
357449317	396	Protein kinase [Medicago truncatula] gi|	0.930	0.474	0.478	2e-53
356556192	414	PREDICTED: G-type lectin S-receptor-like	0.935	0.456	0.465	3e-53
357449331	411	BRASSINOSTEROID INSENSITIVE 1-associated	0.648	0.318	0.679	2e-48
357449319	463	Receptor-like protein kinase [Medicago t	0.930	0.406	0.439	3e-48
356558290	367	PREDICTED: G-type lectin S-receptor-like	0.767	0.422	0.562	9e-48
351726118	364	protein kinase [Glycine max] gi|22345256	0.896	0.497	0.448	6e-47
356532652	407	PREDICTED: G-type lectin S-receptor-like	0.648	0.321	0.659	9e-46
356558282	443	PREDICTED: G-type lectin S-receptor-like	0.648	0.295	0.613	5e-43
225454761	491	PREDICTED: G-type lectin S-receptor-like	0.613	0.252	0.653	2e-42

>gi|356532654|ref|XP_003534886.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300-like [Glycine max]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 114/248 (45%), Positives = 142/248 (57%), Gaps = 60/248 (24%)

Query: 10  TRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGP---- 65
           ++F+T  IDK L+ ME +KPIRFT  Q  IA DN+SNL+GS    T  KG    G     
Sbjct: 47  SKFLTLAIDKFLNDMEREKPIRFTDQQLRIATDNYSNLLGSGGFGTVYKGIFTNGTMVAV 106

Query: 66  --------------------------------FYLLCKKNIL--------GFGQL----- 80
                                            Y  C +N L        G G L     
Sbjct: 107 KVLRGSSNKKIEEQFMAEVGTIGRIHHFNLVRLYGFCFENNLIALVYEYMGNGSLDKYLF 166

Query: 81  -----------REIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK 129
                       +I V T++GIAYLHEEC+Q+I+HYDIKP ++LLD NF PK ADFGLAK
Sbjct: 167 HEKKTLGYEKLHDIAVGTARGIAYLHEECQQRIIHYDIKPGNILLDRNFNPKVADFGLAK 226

Query: 130 LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE 189
           L NR++THIT TG R TPG  APELWMP+ +T KCDV+S+GMLLFE++GRRRNL+ +++E
Sbjct: 227 LCNRDNTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSYGMLLFEIIGRRRNLDIKLAE 286

Query: 190 GQEWFPKW 197
            QEWFP W
Sbjct: 287 SQEWFPTW 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357449317|ref|XP_003594935.1| Protein kinase [Medicago truncatula] gi|355483983|gb|AES65186.1| Protein kinase [Medicago truncatula]

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/232 (47%), Positives = 140/232 (60%), Gaps = 44/232 (18%)

Query: 10  TRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGP---- 65
           + FIT T+DK L+ ME +KPIRFT  Q  IA DN+S  +GS       KG L+ G     
Sbjct: 43  SHFITVTMDKFLNDMEKEKPIRFTDQQLRIATDNYSYRLGSGGFGVVYKGSLSDGTMIAV 102

Query: 66  --------------------------------FYLLC-KKNILGF-------GQLREIEV 85
                                            Y  C +KN++         G L +I +
Sbjct: 103 KVLHGSSDKRIDQQFMAEVGTIGKVHHFNLARLYGYCFEKNLIALVYEYMRNGSLDQIAI 162

Query: 86  STSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
            T++GIAYLHEEC+Q+I+HYDIKP ++LLD NF PK ADFGLAKL NRE+THIT +G R 
Sbjct: 163 GTARGIAYLHEECQQRIIHYDIKPGNILLDTNFNPKVADFGLAKLCNRENTHITMSGGRG 222

Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKW 197
           TPG  APELWMP+ VT KCDV+SFG+LLFE++GRRRN +  ++E QEWFP W
Sbjct: 223 TPGYAAPELWMPFPVTHKCDVYSFGILLFEIIGRRRNHDVNLAESQEWFPIW 274

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556192|ref|XP_003546410.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300-like [Glycine max]

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 116/249 (46%), Positives = 143/249 (57%), Gaps = 60/249 (24%)

Query: 9   STRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGP--- 65
            ++F+T  IDK L+ ME +KPIRFT  Q  IA DN+SNL+GS    T  KG    G    
Sbjct: 42  GSKFLTLAIDKFLNDMEREKPIRFTDQQLRIATDNYSNLLGSGGFGTVYKGIFTNGTMVA 101

Query: 66  ---------------------------------FYLLC-KKNI-------LGFGQL---- 80
                                             Y  C +KN+       +G G L    
Sbjct: 102 VKVLRGSSDKKIEEQFMAEVGTIGRIHHFNLVRLYGFCFEKNLIALVYEYMGNGSLDKYL 161

Query: 81  ------------REIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA 128
                        EI V T++GIAYLHEECRQ+I+HYDIKP ++LLD NF PK ADFGLA
Sbjct: 162 FHEKKTLGYEKLHEIAVGTARGIAYLHEECRQRIIHYDIKPGNILLDRNFNPKVADFGLA 221

Query: 129 KLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS 188
           KL N+++THIT TG R TPG  APELWMP+ +T KCDV+SFGMLLFE++GRRRNL+ + +
Sbjct: 222 KLCNKDNTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSFGMLLFEIIGRRRNLDIKRA 281

Query: 189 EGQEWFPKW 197
           E QEWFP W
Sbjct: 282 ESQEWFPIW 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357449331|ref|XP_003594942.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase [Medicago truncatula] gi|124359372|gb|ABN05838.1| Protein kinase [Medicago truncatula] gi|355483990|gb|AES65193.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase [Medicago truncatula]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/131 (67%), Positives = 106/131 (80%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YLL +KN LG+ +L EI + T++GIAYLHE C  +IVHYDIKP ++LLD NF PK ADFG
Sbjct: 160 YLLHEKNALGYEKLHEIAIGTARGIAYLHELCEHRIVHYDIKPGNILLDGNFNPKVADFG 219

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE 186
           LAKL NRE+THIT TG R TPG  APELWMP+ +T KCDV+SFGMLLFE+VGRRRNL+ +
Sbjct: 220 LAKLCNRENTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSFGMLLFEIVGRRRNLDIK 279

Query: 187 ISEGQEWFPKW 197
            +E QEWFP W
Sbjct: 280 NTESQEWFPIW 290

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357449319|ref|XP_003594936.1| Receptor-like protein kinase [Medicago truncatula] gi|355483984|gb|AES65187.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 109/248 (43%), Positives = 138/248 (55%), Gaps = 60/248 (24%)

Query: 10  TRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGP---- 65
           ++FIT T+DK L+ ME +KPIRFT  Q  IA DN+SNL+GS    T  KG  + G     
Sbjct: 95  SQFITLTMDKFLNDMEREKPIRFTGQQLRIATDNYSNLLGSGGFGTVYKGIFSNGTMVAV 154

Query: 66  --------------------------------FYLLC-KKNI-------LGFGQLREIEV 85
                                            Y  C ++N+       +G G L     
Sbjct: 155 KVLRGSSNKKIDEQFMAEVGTIGRIHHFNLVRLYGFCFERNLIALVYEYMGNGSLDRYLF 214

Query: 86  STSKGIAY----------------LHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK 129
             +K + Y                LHEEC+ +I+HYDIKP ++LLD+NF+PK ADFGLAK
Sbjct: 215 HETKVLGYEKLHEIAIGTARGIAYLHEECQHRIIHYDIKPGNILLDKNFYPKVADFGLAK 274

Query: 130 LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE 189
             NRE+THIT TG R TPG  APELWMP+ +T KCDV+SFGMLLFE++GRRRNL  + +E
Sbjct: 275 NCNRENTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSFGMLLFEIIGRRRNLAIKNTE 334

Query: 190 GQEWFPKW 197
            QEWFP W
Sbjct: 335 SQEWFPIW 342

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558290|ref|XP_003547440.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080-like [Glycine max]

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 114/160 (71%), Gaps = 5/160 (3%)

Query: 43  NFSNLVG---SEDTETYIKGFLAMGPF--YLLCKKNILGFGQLREIEVSTSKGIAYLHEE 97
           N   L+G     D    +  ++  G    YL  +K  LG+ +L EI V  ++GIAYLHE+
Sbjct: 82  NLVQLIGFCFERDLRALVYEYMENGSLDRYLFHEKKTLGYEKLYEIAVGIARGIAYLHED 141

Query: 98  CRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMP 157
           C+Q+I+HYDIKP ++LLD NF PK ADFGLAKL NR++THIT TG R TPG  APELWMP
Sbjct: 142 CKQRIIHYDIKPGNILLDHNFNPKVADFGLAKLCNRDNTHITMTGGRGTPGYAAPELWMP 201

Query: 158 YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKW 197
           + VT KCDV+S+GMLLFE+VGRRRN++  + E QEWFP W
Sbjct: 202 FPVTHKCDVYSYGMLLFEIVGRRRNVDTNLPESQEWFPVW 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726118|ref|NP_001235580.1| protein kinase [Glycine max] gi|223452564|gb|ACM89609.1| protein kinase [Glycine max]

 Score =  192 bits (488), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 108/241 (44%), Positives = 134/241 (55%), Gaps = 60/241 (24%)

Query: 17  IDKSLDAMEMDKPIRFTSPQRMIAADN-----------------FSN--------LVGSE 51
           +DK L+ ME +KPIRFT  Q  IA DN                 FSN        L GS 
Sbjct: 1   MDKFLNDMEREKPIRFTDQQLRIATDNYSFLLGSGGFGVVYKGSFSNGTIVAVKVLRGSS 60

Query: 52  DT-----------------------------ETYIKG----FLAMGPF--YLLCKKNILG 76
           D                              E +++     ++  G    YL  +   L 
Sbjct: 61  DKRIDEQFMAEVGTIGKVHHFNLVRLYGFCFERHLRALVYEYMVNGALEKYLFHENTTLS 120

Query: 77  FGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT 136
           F +L EI V T++GIAYLHEEC+Q+I+HYDIKP ++LLD NF PK ADFGLAKL NR++T
Sbjct: 121 FEKLHEIAVGTARGIAYLHEECQQRIIHYDIKPGNILLDRNFCPKVADFGLAKLCNRDNT 180

Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPK 196
           HI+ TG R TPG  APELW+P+ VT KCDV+SFGMLLFE++GRRRN    + E Q WFP 
Sbjct: 181 HISMTGGRGTPGYAAPELWLPFPVTHKCDVYSFGMLLFEIIGRRRNHNINLPESQVWFPM 240

Query: 197 W 197
           W
Sbjct: 241 W 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532652|ref|XP_003534885.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080-like [Glycine max]

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 87/132 (65%), Positives = 103/132 (78%), Gaps = 1/132 (0%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL  +   L F +L EI V T++GIAYLHEEC+Q+I+HYDIKP ++LLD NF PK ADFG
Sbjct: 154 YLFHESMTLSFEKLHEIAVGTARGIAYLHEECQQRIIHYDIKPGNILLDRNFNPKVADFG 213

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEK 185
           LAKL NRE TH+T T  R TPG  APELWMP + VT KCDV+SFGMLLFE++GRRRNL+ 
Sbjct: 214 LAKLCNREITHLTLTKSRGTPGYAAPELWMPNFPVTHKCDVYSFGMLLFEIIGRRRNLDV 273

Query: 186 EISEGQEWFPKW 197
           E+ E QEWFP W
Sbjct: 274 ELVESQEWFPVW 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558282|ref|XP_003547436.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300-like [Glycine max]

 Score =  179 bits (454), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 81/132 (61%), Positives = 103/132 (78%), Gaps = 1/132 (0%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL  +   + F +L EI + T+KG+AYLHEEC+Q+I+HYDIKP ++LLD N  PK ADFG
Sbjct: 193 YLFDENRTIEFEKLHEIAIGTAKGLAYLHEECQQRIIHYDIKPGNILLDRNLNPKVADFG 252

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEK 185
           LAK+ NR++THIT T  R TPG  APELWMP + +T KCDV+SFGMLLFE++GRRRNL+ 
Sbjct: 253 LAKVCNRKNTHITLTRGRGTPGYAAPELWMPNFPITHKCDVYSFGMLLFEILGRRRNLDI 312

Query: 186 EISEGQEWFPKW 197
           + +E QEWFP W
Sbjct: 313 DHAESQEWFPIW 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454761|ref|XP_002272528.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300-like [Vitis vinifera]

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/124 (65%), Positives = 96/124 (77%)

Query: 77  FGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT 136
           +G+  EI V T+KGIAYLHEECRQ+I+HYDIKP +VLLD  F PK ADFGLAKL NR+ T
Sbjct: 258 WGKFEEIAVGTAKGIAYLHEECRQRIIHYDIKPANVLLDAVFSPKLADFGLAKLCNRDST 317

Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPK 196
            +  TG R TPG  APELW PY VT KCDV+SFGMLLFE+VGRRRN +  +SE ++W P+
Sbjct: 318 QVPVTGFRGTPGYAAPELWKPYPVTCKCDVYSFGMLLFEMVGRRRNHDASLSETRQWLPR 377

Query: 197 WGRE 200
           W  E
Sbjct: 378 WTWE 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2059103	828	AT2G19130 [Arabidopsis thalian	0.613	0.149	0.496	6.1e-27
TAIR|locus:2147635	452	AT5G20050 [Arabidopsis thalian	0.599	0.267	0.401	6.5e-25
TAIR|locus:2116525	821	SD2-5 "S-domain-2 5" [Arabidop	0.633	0.155	0.459	2.3e-24
TAIR|locus:2026155	829	AT1G34300 [Arabidopsis thalian	0.584	0.142	0.466	7.1e-24
TAIR|locus:2182603	872	AT5G35370 [Arabidopsis thalian	0.529	0.122	0.445	3e-21
TAIR|locus:2204480	666	AT1G66910 [Arabidopsis thalian	0.628	0.190	0.401	3.2e-21
TAIR|locus:2176707	579	AT5G38250 [Arabidopsis thalian	0.603	0.210	0.434	4.9e-21
TAIR|locus:2176737	665	PR5K "PR5-like receptor kinase	0.584	0.177	0.424	6.7e-21
TAIR|locus:2176697	588	AT5G38240 [Arabidopsis thalian	0.603	0.207	0.434	1.4e-20
TAIR|locus:2019688	674	AT1G66930 [Arabidopsis thalian	0.767	0.229	0.385	1.5e-20

TAIR|locus:2059103 AT2G19130 [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 6.1e-27, P = 6.1e-27
 Identities = 64/129 (49%), Positives = 91/129 (70%)

Query:    71 KKNILGFGQLR-EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK 129
             +K +LG+ +LR +I + T++G+AYLH+ECR  I+H DIKPE++LLD  F PK ADFGLAK
Sbjct:   584 EKIVLGW-KLRFQIALGTARGLAYLHDECRDCIIHCDIKPENILLDSQFCPKVADFGLAK 642

Query:   130 LYNREHTHITSTGRRRTPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS 188
             L  R+ + + +T  R T G  APE W+   ++T K DV+S+GM+LFE+V  RRN E+  +
Sbjct:   643 LVGRDFSRVLTT-MRGTRGYLAPE-WISGVAITAKADVYSYGMMLFELVSGRRNTEQSEN 700

Query:   189 EGQEWFPKW 197
             E   +FP W
Sbjct:   701 EKVRFFPSW 709

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0048544 "recognition of pollen" evidence=IEA

TAIR|locus:2147635 AT5G20050 [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 6.5e-25, Sum P(2) = 6.5e-25
 Identities = 51/127 (40%), Positives = 84/127 (66%)

Query:    75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
             L + Q  ++ +  +K +AYLH +CR KI+H D+KPE++LLDENF     DFGL+KL  R+
Sbjct:   205 LSWEQRYQVAIDVAKALAYLHHDCRSKILHLDVKPENILLDENFRAVVTDFGLSKLIARD 264

Query:   135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEK-EISEGQ-- 191
              + +  T  R T G  APE  + + +++K DV+S+G++L E++G RR++ + E+ E +  
Sbjct:   265 ESRVL-TDIRGTRGYLAPEWLLEHGISEKSDVYSYGIVLLEMIGGRRSISRVEVKETKKK 323

Query:   192 --EWFPK 196
               E+FP+
Sbjct:   324 KLEYFPR 330

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2116525 SD2-5 "S-domain-2 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 2.3e-24, P = 2.3e-24
 Identities = 63/137 (45%), Positives = 93/137 (67%)

Query:    60 FLAMGPF--YLLCKKN---ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL 114
             FL+ G    ++  KK+   +L +     I + T+KG+AYLHE+C  +IVH DIKPE++LL
Sbjct:   567 FLSKGSLERWIFRKKDGDVLLDWDTRFNIALGTAKGLAYLHEDCDARIVHCDIKPENILL 626

Query:   115 DENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMP-YSVTQKCDVFSFGMLL 173
             D+NF  K +DFGLAKL  RE +H+ +T  R T G  APE W+  Y++++K DV+S+GM+L
Sbjct:   627 DDNFNAKVSDFGLAKLMTREQSHVFTT-MRGTRGYLAPE-WITNYAISEKSDVYSYGMVL 684

Query:   174 FEVVGRRRNLE-KEISE 189
              E++G R+N +  E SE
Sbjct:   685 LELIGGRKNYDPSETSE 701

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA;ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA;IDA

TAIR|locus:2026155 AT1G34300 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 7.1e-24, Sum P(2) = 7.1e-24
 Identities = 56/120 (46%), Positives = 74/120 (61%)

Query:    83 IEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTG 142
             I + T+KGI YLHEECR  IVH DIKPE++L+D+NF  K +DFGLAKL N +      + 
Sbjct:   585 IALGTAKGITYLHEECRDCIVHCDIKPENILVDDNFAAKVSDFGLAKLLNPKDNRYNMSS 644

Query:   143 RRRTPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGREE 201
              R T G  APE W+    +T K DV+S+GM+L E+V  +RN +       + F  W  EE
Sbjct:   645 VRGTRGYLAPE-WLANLPITSKSDVYSYGMVLLELVSGKRNFDVSEKTNHKKFSIWAYEE 703

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA;ISS

GO:0048544 "recognition of pollen" evidence=IEA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2182603 AT5G35370 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
 Identities = 49/110 (44%), Positives = 79/110 (71%)

Query:    74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR 133
             +L + +  +I + T++G+AYLH  C QKI+H D+KPE++LL ++F PK +DFGL+KL N+
Sbjct:   607 VLEWQERFDIALGTARGLAYLHSGCDQKIIHCDVKPENILLHDHFQPKISDFGLSKLLNQ 666

Query:   134 EHTHITSTGRRRTPGCEAPELWMPYS-VTQKCDVFSFGMLLFEVVGRRRN 182
             E + + +T  R T G  APE W+  + +++K DV+S+GM+L E+V  R+N
Sbjct:   667 EESSLFTT-MRGTRGYLAPE-WITNAAISEKADVYSYGMVLLELVSGRKN 714

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA;ISS

TAIR|locus:2204480 AT1G66910 [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.2e-21, P = 3.2e-21
 Identities = 53/132 (40%), Positives = 82/132 (62%)

Query:    71 KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL 130
             K + + + +L  I +  ++G+ YLH  CR +IVH+DIKP++VLLD+N  PK +DFGLAKL
Sbjct:   436 KSSTMDWRELYGIALGVARGLEYLHHGCRTRIVHFDIKPQNVLLDDNLSPKVSDFGLAKL 495

Query:   131 YNREHTHITSTGRRRTPGCEAPELWMP-YS-VTQKCDVFSFGMLLFEVVGRRRNLEKE-- 186
               R+ + ++    R T G  APE++   Y  V+ K DV+S+GML+ +++G R     E  
Sbjct:   496 CERKESILSLMDTRGTIGYIAPEVFSRVYGRVSHKSDVYSYGMLVLDIIGARNKTSTEDT 555

Query:   187 -ISEGQEWFPKW 197
               S    +FP+W
Sbjct:   556 TSSTSSMYFPEW 567

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2176707 AT5G38250 [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 56/129 (43%), Positives = 81/129 (62%)

Query:    75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
             L    L  I +  ++G+ YLH  C+ +IVH+DIKP++VLLDEN  PK ADFGLAKL  ++
Sbjct:   359 LDVSTLYGIALGVARGLEYLHYGCKTRIVHFDIKPQNVLLDENLRPKVADFGLAKLCEKQ 418

Query:   135 HTHITSTGRRRTPGCEAPELW--MPYSVTQKCDVFSFGMLLFEVVGRRRNLEK----EIS 188
              + ++    R T G  APEL+  M  SV+ K DV+S+GML+ E++G R N E+    + +
Sbjct:   419 ESILSLLDTRGTIGYIAPELFSRMYGSVSHKSDVYSYGMLVLEMIGAR-NKERVQNADPN 477

Query:   189 EGQEWFPKW 197
                 +FP W
Sbjct:   478 NSSAYFPDW 486

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2176737 PR5K "PR5-like receptor kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 6.7e-21, P = 6.7e-21
 Identities = 53/125 (42%), Positives = 82/125 (65%)

Query:    79 QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
             +L ++ V  S+G+ YLH  C  +IVH+DIKP+++L+DEN  PK +DFGLAKL   + + I
Sbjct:   428 RLYDVAVGISRGLEYLHNRCVTRIVHFDIKPQNILMDENLCPKISDFGLAKLCKNKESII 487

Query:   139 TSTGRRRTPGCEAPELWMPY--SVTQKCDVFSFGMLLFEVVGRRRNLEK-EIS---EGQE 192
             +    R T G  APE++     +V+ K DV+S+GM++ E++G + N+EK E S    G  
Sbjct:   488 SMLHMRGTFGYIAPEMFSKNFGAVSHKSDVYSYGMVVLEMIGAK-NIEKVEYSGSNNGSM 546

Query:   193 WFPKW 197
             +FP+W
Sbjct:   547 YFPEW 551

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0009620 "response to fungus" evidence=ISS

TAIR|locus:2176697 AT5G38240 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 56/129 (43%), Positives = 81/129 (62%)

Query:    75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
             L    L  I +  ++GI YLH  C+++IVH+DIKP++VLLDEN  PK ADFGLAKL  ++
Sbjct:   367 LDVSTLYGIALGVARGIEYLHFGCKKRIVHFDIKPQNVLLDENLKPKVADFGLAKLCEKQ 426

Query:   135 HTHITSTGRRRTPGCEAPELWMP-Y-SVTQKCDVFSFGMLLFEVVGRRRNLEK----EIS 188
              + ++    R T G  APEL+   Y +V+ K DV+S+GML+ E+ G R N E+    + +
Sbjct:   427 ESILSLLDTRGTIGYIAPELFSRVYGNVSHKSDVYSYGMLVLEMTGAR-NKERVQNADSN 485

Query:   189 EGQEWFPKW 197
                 +FP W
Sbjct:   486 NSSAYFPDW 494

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2019688 AT1G66930 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 64/166 (38%), Positives = 97/166 (58%)

Query:    43 NFSNLVG--SEDTE-TYIKGFLAMGPF-YLLCKKN--ILGFGQLREIEVSTSKGIAYLHE 96
             N  +L+G  SE +    I  FL  G     + +K   IL    L  I +  ++G+ YLH 
Sbjct:   401 NIVSLLGFCSEGSRRAIIYEFLENGSLDKFISEKTSVILDLTALYGIALGVARGLEYLHY 460

Query:    97 ECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWM 156
              C+ +IVH+DIKP++VLLD+N  PK +DFGLAKL  ++ + ++    R T G  APE+  
Sbjct:   461 GCKTRIVHFDIKPQNVLLDDNLSPKVSDFGLAKLCEKKESVMSLMDTRGTIGYIAPEMIS 520

Query:   157 P-Y-SVTQKCDVFSFGMLLFEVVGRRRN--LEKEISEGQE-WFPKW 197
               Y SV+ K DV+S+GML+FE++G R+     +  + G   +FP+W
Sbjct:   521 RVYGSVSHKSDVYSYGMLVFEMIGARKKERFGQNSANGSSMYFPEW 566

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	LOW CONFIDENCE prediction!
3rd Layer	2.7.11	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036852001 SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (359 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	7e-21
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-20
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-20
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	2e-14
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	4e-14
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	4e-14
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	5e-14
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	5e-14
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	2e-13
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	2e-12
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	3e-12
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	5e-12
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	1e-11
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	5e-11
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	9e-11
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	1e-10
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	2e-10
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	2e-10
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	3e-10
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	4e-10
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	4e-10
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	5e-10
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	6e-10
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	6e-10
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	9e-10
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	1e-09
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	1e-09
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	1e-09
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	2e-09
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	2e-09
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	3e-09
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	4e-09
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	6e-09
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	7e-09
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	8e-09
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	8e-09
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	9e-09
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	9e-09
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	1e-08
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	1e-08
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	1e-08
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	1e-08
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	1e-08
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	2e-08
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	2e-08
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	2e-08
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	2e-08
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	3e-08
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	3e-08
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	3e-08
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	3e-08
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	3e-08
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	3e-08
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	4e-08
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	4e-08
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	4e-08
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	5e-08
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	5e-08
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	6e-08
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	8e-08
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	8e-08
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	1e-07
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	1e-07
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	1e-07
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	1e-07
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	1e-07
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	1e-07
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	1e-07
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	2e-07
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	2e-07
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	2e-07
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	2e-07
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	2e-07
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	3e-07
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	3e-07
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	3e-07
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	3e-07
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	4e-07
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	4e-07
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	4e-07
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	4e-07
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	5e-07
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	5e-07
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	5e-07
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	6e-07
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	6e-07
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	6e-07
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	7e-07
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	7e-07
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	8e-07
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	9e-07
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	1e-06
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	1e-06
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	1e-06
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	1e-06
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	1e-06
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	1e-06
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	1e-06
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	2e-06
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	2e-06
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	2e-06
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	2e-06
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	2e-06
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	2e-06
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	2e-06
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	2e-06
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	2e-06
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	3e-06
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	3e-06
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	3e-06
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	3e-06
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	3e-06
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	3e-06
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	4e-06
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	4e-06
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	4e-06
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	5e-06
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	5e-06
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	6e-06
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	6e-06
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	7e-06
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	7e-06
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	8e-06
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	8e-06
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	8e-06
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	9e-06
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	9e-06
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	1e-05
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	1e-05
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	1e-05
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	1e-05
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	1e-05
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	1e-05
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	1e-05
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	1e-05
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	1e-05
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	1e-05
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	1e-05
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	2e-05
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	2e-05
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	2e-05
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	2e-05
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	2e-05
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	3e-05
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	3e-05
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	3e-05
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	3e-05
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	3e-05
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	3e-05
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	4e-05
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	4e-05
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	4e-05
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	4e-05
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	4e-05
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	4e-05
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	4e-05
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	4e-05
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	4e-05
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	5e-05
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	5e-05
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	5e-05
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	5e-05
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	6e-05
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	6e-05
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	6e-05
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	6e-05
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	6e-05
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	7e-05
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	7e-05
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	7e-05
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	7e-05
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	8e-05
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	9e-05
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	9e-05
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	9e-05
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	9e-05
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	1e-04
cd06638	286	cd06638, STKc_myosinIIIA, Catalytic domain of the	1e-04
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	1e-04
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	1e-04
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	1e-04
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	1e-04
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	1e-04
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	1e-04
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	1e-04
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	1e-04
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	1e-04
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	1e-04
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	1e-04
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	1e-04
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	2e-04
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	2e-04
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	2e-04
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	2e-04
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	2e-04
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	2e-04
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	2e-04
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	2e-04
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	2e-04
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	2e-04
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	2e-04
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	3e-04
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	3e-04
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	3e-04
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	3e-04
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	3e-04
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	3e-04
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	3e-04
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	4e-04
cd05107	401	cd05107, PTKc_PDGFR_beta, Catalytic domain of the	4e-04
cd05105	400	cd05105, PTKc_PDGFR_alpha, Catalytic domain of the	4e-04
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	4e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-04
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	4e-04
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	5e-04
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	6e-04
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	6e-04
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	6e-04
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	7e-04
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	7e-04
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	7e-04
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	8e-04
cd05625	382	cd05625, STKc_LATS1, Catalytic domain of the Prote	0.001
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	0.001
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	0.001
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	0.001
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	0.001
cd05104	375	cd05104, PTKc_Kit, Catalytic domain of the Protein	0.001
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	0.001
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	0.001
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	0.001
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	0.001
PHA03211	461	PHA03211, PHA03211, serine/threonine kinase US3; P	0.001
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	0.001
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	0.002
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	0.002
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	0.002
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	0.002
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	0.002
cd05627	360	cd05627, STKc_NDR2, Catalytic domain of the Protei	0.002
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	0.002
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	0.002
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	0.002
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	0.002
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	0.002
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	0.002
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	0.002
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	0.002
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	0.003
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	0.003
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	0.003
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	0.003
cd05106	374	cd05106, PTKc_CSF-1R, Catalytic domain of the Prot	0.003
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	0.003
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	0.003
cd05628	363	cd05628, STKc_NDR1, Catalytic domain of the Protei	0.003
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	0.003
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	0.004
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	0.004
PRK13184	932	PRK13184, pknD, serine/threonine-protein kinase; R	0.004

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 85.8 bits (213), Expect = 7e-21
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 18/169 (10%)

Query: 17  IDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGPF--------YL 68
           I K   +  +++ +R     + +   N   L G  + E ++  +L M  +         L
Sbjct: 26  IKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHL--YLVM-EYCEGGSLKDLL 82

Query: 69  LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF-PKAADFGL 127
              +  L   ++  I +   +G+ YLH      I+H D+KPE++LLD +    K ADFGL
Sbjct: 83  KENEGKLSEDEILRILLQILEGLEYLHS---NGIIHRDLKPENILLDSDNGKVKLADFGL 139

Query: 128 AKLYNREHTHITSTGRRRTPGCEAPELWM-PYSVTQKCDVFSFGMLLFE 175
           +KL               TP   APE+ +     ++K D++S G++L+E
Sbjct: 140 SKLLT--SDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYE 186

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 85.7 bits (213), Expect = 1e-20
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 15/145 (10%)

Query: 42  DNFSNLVGSEDTETYIKGFLAM-----GP-FYLLCKKNILGFGQLREIEVSTSKGIAYLH 95
            N   L    + E  +  +L M     G  F LL K+  L   + R         + YLH
Sbjct: 57  PNIVRLYDVFEDEDKL--YLVMEYCEGGDLFDLLKKRGRLSEDEARFYLRQILSALEYLH 114

Query: 96  EECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELW 155
               + IVH D+KPE++LLDE+   K ADFGLA+  +      T  G   TP   APE+ 
Sbjct: 115 S---KGIVHRDLKPENILLDEDGHVKLADFGLARQLDPGEKLTTFVG---TPEYMAPEVL 168

Query: 156 MPYSVTQKCDVFSFGMLLFE-VVGR 179
           +     +  D++S G++L+E + G+
Sbjct: 169 LGKGYGKAVDIWSLGVILYELLTGK 193

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 85.8 bits (213), Expect = 1e-20
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 6/116 (5%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           F  L +   L   + ++I +   +G+ YLH      I+H D+KPE++LLDEN   K ADF
Sbjct: 86  FDYLSRGGPLSEDEAKKIALQILRGLEYLHS---NGIIHRDLKPENILLDENGVVKIADF 142

Query: 126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYS-VTQKCDVFSFGMLLFEVVGRR 180
           GLAK   +  +    T    TP   APE+ +  +    K DV+S G++L+E++  +
Sbjct: 143 GLAKKLLKSSSS--LTTFVGTPWYMAPEVLLGGNGYGPKVDVWSLGVILYELLTGK 196

Length = 260

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 69.1 bits (170), Expect = 2e-14
 Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 77  FGQLREIEVSTS-----KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           FG+L E  +        +G+AYLH      IVH DIK  ++L+D +   K ADFG AK  
Sbjct: 95  FGKLPEPVIRKYTRQILEGLAYLH---SNGIVHRDIKGANILVDSDGVVKLADFGCAKRL 151

Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFE 175
               T   +   R TP   APE+       +  D++S G  + E
Sbjct: 152 GDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIE 195

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 68.3 bits (168), Expect = 4e-14
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 5/111 (4%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L      L    L ++ +  +KG+ YL     +  VH D+   + L+ EN   K +DFG
Sbjct: 91  FLRKHGEKLTLKDLLQMALQIAKGMEYLES---KNFVHRDLAARNCLVTENLVVKISDFG 147

Query: 127 LAK-LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           L++ +Y  ++      G+       APE       T K DV+SFG+LL+E+
Sbjct: 148 LSRDIYEDDYYRKRGGGKLPIKWM-APESLKDGKFTSKSDVWSFGVLLWEI 197

Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 68.3 bits (168), Expect = 4e-14
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 18/117 (15%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL   +  L    L    +  ++G+ YL     +  +H D+   + L+ EN   K +DFG
Sbjct: 91  YLRKNRPKLSLSDLLSFALQIARGMEYLE---SKNFIHRDLAARNCLVGENLVVKISDFG 147

Query: 127 LAK-LYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEV 176
           L++ LY+ ++         R  G + P  WM          T K DV+SFG+LL+E+
Sbjct: 148 LSRDLYDDDYY--------RKRGGKLPIRWMAPESLKEGKFTSKSDVWSFGVLLWEI 196

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 68.3 bits (167), Expect = 5e-14
 Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 21/115 (18%)

Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+++GFG      +  +KG+ YL     +K VH D+   + +LDE+F  K ADFGLA+ +
Sbjct: 98  KDLIGFG------LQVAKGMEYLAS---KKFVHRDLAARNCMLDESFTVKVADFGLARDI 148

Query: 131 YNREHTHITSTGRRRTPGCEAPELWMP------YSVTQKCDVFSFGMLLFEVVGR 179
           Y++E+  +         G + P  WM          T K DV+SFG+LL+E++ R
Sbjct: 149 YDKEYYSV-----HNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 198

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 67.9 bits (167), Expect = 5e-14
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 13/96 (13%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTP 147
            + YLH    +KI+H DIKP+++ L  N   K  DFG++K+ +     +  T  G   TP
Sbjct: 115 ALKYLHS---RKILHRDIKPQNIFLTSNGLVKLGDFGISKVLS-STVDLAKTVVG---TP 167

Query: 148 GCEAPELW--MPYSVTQKCDVFSFGMLLFEVVGRRR 181
              +PEL    PY+   K D++S G +L+E+   + 
Sbjct: 168 YYLSPELCQNKPYN--YKSDIWSLGCVLYELCTLKH 201

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 66.4 bits (163), Expect = 2e-13
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 11/114 (9%)

Query: 67  YLL-CKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           YL   +   L    L    +  ++G+ YL     +  +H D+   + L+ EN   K +DF
Sbjct: 91  YLRKNRPKELSLSDLLSFALQIARGMEYLE---SKNFIHRDLAARNCLVGENLVVKISDF 147

Query: 126 GLAKLYNREHTHITSTGR---RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           GL++    +  +    G+   R      APE       T K DV+SFG+LL+E+
Sbjct: 148 GLSRDLYDDDYYKVKGGKLPIRWM----APESLKEGKFTSKSDVWSFGVLLWEI 197

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H DIKP+++LLDE       DF +A           +T    TPG 
Sbjct: 112 ALEYLHS---KGIIHRDIKPDNILLDEQGHVHITDFNIATKV---TPDTLTTSTSGTPGY 165

Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEW 193
            APE+      +   D +S G+  +E +  +R         ++ 
Sbjct: 166 MAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQ 209

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 63.0 bits (154), Expect = 3e-12
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 10/89 (11%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           KG+ YLH      I+H DIK  ++LL  +   K  DFGL+   +      T  G   TP 
Sbjct: 109 KGLEYLHS---NGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVG---TPY 162

Query: 149 CEAPELW--MPYSVTQKCDVFSFGMLLFE 175
             APE+    PY    K D++S G+   E
Sbjct: 163 WMAPEVINGKPYD--YKADIWSLGITAIE 189

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 62.6 bits (153), Expect = 5e-12
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 15/113 (13%)

Query: 71  KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL 130
           +K+ L    L    +  +KG+ YL     +K VH D+   + L+ E+   K +DFGL++ 
Sbjct: 98  EKSTLSLKDLLSFAIQIAKGMEYLAS---KKFVHRDLAARNCLVGEDLVVKISDFGLSRD 154

Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPYSV------TQKCDVFSFGMLLFEVV 177
              +  +   TG +       P  WM          T K DV+SFG+LL+E+ 
Sbjct: 155 VYDDDYYRKKTGGK------LPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIF 201

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           +G+  LHE   QKI+H D+K  ++LL  N   K  D G++K+  +     T  G   TP 
Sbjct: 114 RGLQALHE---QKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAK-TQIG---TPH 166

Query: 149 CEAPELW--MPYSVTQKCDVFSFGMLLFE 175
             APE+W   PYS   K D++S G LL+E
Sbjct: 167 YMAPEVWKGRPYS--YKSDIWSLGCLLYE 193

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 59.9 bits (146), Expect = 5e-11
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHTHITSTGRRRTPGC 149
             YLH    + I++ D+KPE++LLD N + K  DFG AK L + + T  T  G   TP  
Sbjct: 106 FEYLH---NRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTW-TFCG---TPEY 158

Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFE 175
            APE+ +        D +S G+LL+E
Sbjct: 159 VAPEIILNKGYDFSVDYWSLGILLYE 184

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 59.0 bits (143), Expect = 9e-11
 Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 11/108 (10%)

Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L    L ++    ++G+AYL E   Q  +H D+   ++L+ E+   K ADFGLA+L  +E
Sbjct: 101 LPVASLIDMACQVAEGMAYLEE---QNSIHRDLAARNILVGEDLVCKVADFGLARLI-KE 156

Query: 135 HTHITSTGR---RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGR 179
             +++S  +   + T    APE     + + K DV+SFG+LL+E+   
Sbjct: 157 DVYLSSDKKIPYKWT----APEAASHGTFSTKSDVWSFGILLYEMFTY 200

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 15/95 (15%)

Query: 86  STSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
            T KG+ YLH     K +H DIK  ++LL+E    K ADFG++         +T T  +R
Sbjct: 107 QTLKGLEYLH---SNKKIHRDIKAGNILLNEEGQAKLADFGVS-------GQLTDTMAKR 156

Query: 146 -----TPGCEAPELWMPYSVTQKCDVFSFGMLLFE 175
                TP   APE+        K D++S G+   E
Sbjct: 157 NTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIE 191

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 22/145 (15%)

Query: 43  NFSNLV---GSEDTETY---IKGFLAMGPFYLLCKKNILGFGQLREIEVSTS-----KGI 91
              N+V   GS +T      I  +   G    + KK    FG   E  V+       +G+
Sbjct: 57  KHPNIVKYIGSIETSDSLYIILEYAENGSLRQIIKK----FGPFPESLVAVYVYQVLQGL 112

Query: 92  AYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHITSTGRRRTPGCE 150
           AYLHE   Q ++H DIK  ++L  ++   K ADFG+A KL +      +  G   TP   
Sbjct: 113 AYLHE---QGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVG---TPYWM 166

Query: 151 APELWMPYSVTQKCDVFSFGMLLFE 175
           APE+      +   D++S G  + E
Sbjct: 167 APEVIEMSGASTASDIWSLGCTVIE 191

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 4/110 (3%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL   ++ +   +L        KG+ YL     Q+ +H D+   ++L++     K +DFG
Sbjct: 98  YLQRHRDQINLKRLLLFSSQICKGMDYLGS---QRYIHRDLAARNILVESEDLVKISDFG 154

Query: 127 LAKLYNREHTHITSTGRRRTPG-CEAPELWMPYSVTQKCDVFSFGMLLFE 175
           LAK+   +  +        +P    APE       +   DV+SFG+ L+E
Sbjct: 155 LAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYE 204

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 14/136 (10%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL  +K  LG   L ++     + + YL        +H D+   + L+ E+   K +DFG
Sbjct: 89  YLRERKGKLGTEWLLDMCSDVCEAMEYLESNG---FIHRDLAARNCLVGEDNVVKVSDFG 145

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE 186
           LA+ Y  +  + +S G +       PE++     + K DV+SFG+L++EV          
Sbjct: 146 LAR-YVLDDQYTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEV---------- 194

Query: 187 ISEGQEWFPKWGREEV 202
            SEG+  + ++   EV
Sbjct: 195 FSEGKMPYERFSNSEV 210

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 99  RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTPGCEAPELWM 156
              ++H D+KP ++ LD N   K  DFGLAK+     +    T  G   TP   +PE   
Sbjct: 128 GNTVLHRDLKPANIFLDANNNVKLGDFGLAKILG-HDSSFAKTYVG---TPYYMSPEQLN 183

Query: 157 PYSVTQKCDVFSFGMLLFE 175
             S  +K D++S G L++E
Sbjct: 184 HMSYDEKSDIWSLGCLIYE 202

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 6/104 (5%)

Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY-NR 133
           L   QL ++    ++G+AYL     +  +H D+   ++L+ EN   K ADFGLA+L  + 
Sbjct: 100 LRLPQLVDMAAQIAEGMAYLE---SRNYIHRDLAARNILVGENLVCKIADFGLARLIEDD 156

Query: 134 EHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           E+T     G +      APE       T K DV+SFG+LL E+V
Sbjct: 157 EYT--AREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIV 198

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 56.8 bits (138), Expect = 5e-10
 Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 11/89 (12%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHTHITSTGRRRTPG 148
            + YLH      I++ D+KPE++LLD +   K  DFGLAK L +      T  G   TP 
Sbjct: 105 ALEYLH---SLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCG---TPE 158

Query: 149 CEAPELWM--PYSVTQKCDVFSFGMLLFE 175
             APE+ +   Y   +  D +S G+LL+E
Sbjct: 159 YLAPEVLLGKGY--GKAVDWWSLGVLLYE 185

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 56.8 bits (138), Expect = 6e-10
 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 21/106 (19%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTG------- 142
            + YLH    + I+H D+KPE++LLD++   K  DFG AK+ +   +  ++ G       
Sbjct: 114 ALEYLH---SKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDS 170

Query: 143 -----RRR------TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
                RRR      T    +PEL       +  D+++ G ++++++
Sbjct: 171 QIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQML 216

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 56.5 bits (137), Expect = 6e-10
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 13/96 (13%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK--LYNREHTHITSTGRRR-- 145
            + YLH      I+H D+KP+++L+D N   K  DFGL+K  L  R+          +  
Sbjct: 105 ALEYLH---SNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRI 161

Query: 146 --TPGCEAPE--LWMPYSVTQKCDVFSFGMLLFEVV 177
             TP   APE  L   +S T   D +S G +L+E +
Sbjct: 162 VGTPDYIAPEVILGQGHSKT--VDWWSLGCILYEFL 195

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 56.8 bits (137), Expect = 9e-10
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 8/97 (8%)

Query: 94  LHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRR--RTPGCEA 151
           +H    + ++H DIK  ++LL  N   K  DFG +K+Y    T     GR    TP   A
Sbjct: 156 VHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYA--ATVSDDVGRTFCGTPYYVA 213

Query: 152 PELWM--PYSVTQKCDVFSFGMLLFEVVGRRRNLEKE 186
           PE+W   PYS  +K D+FS G+LL+E++  +R  + E
Sbjct: 214 PEIWRRKPYS--KKADMFSLGVLLYELLTLKRPFDGE 248

Length = 496

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 12/96 (12%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRR 145
           +G+A+ H      I+H D+KPE++L++     K ADFGLA+ +    R +TH   T   R
Sbjct: 109 QGLAFCH---SHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYR 165

Query: 146 TPGCEAPELWMPYSV-TQKCDVFSFGMLLFEVVGRR 180
                APEL +     +   D++S G +  E++ RR
Sbjct: 166 -----APELLLGDKGYSTPVDIWSVGCIFAELLSRR 196

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 47/134 (35%), Positives = 66/134 (49%), Gaps = 36/134 (26%)

Query: 73  NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLY 131
            ILG     +I V+T K + YL EE   KI+H D+KP ++LLD N   K  DFG++ +L 
Sbjct: 107 EILG-----KIAVATVKALNYLKEEL--KIIHRDVKPSNILLDRNGNIKLCDFGISGQLV 159

Query: 132 NREHTHITSTGRRRTPGCE---APELWMP-----YSVTQKCDVFSFGMLLFEVVGRRRNL 183
           +       S  + R  GC    APE   P     Y V  + DV+S G+ L+EV       
Sbjct: 160 D-------SIAKTRDAGCRPYMAPERIDPSARDGYDV--RSDVWSLGITLYEV------- 203

Query: 184 EKEISEGQEWFPKW 197
               + G+  +PKW
Sbjct: 204 ----ATGKFPYPKW 213

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 4/99 (4%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL ++    + G+AYL     Q  +H D+   +VL+ EN   K ADFGLA++  +E  + 
Sbjct: 104 QLIDMAAQVASGMAYLEA---QNYIHRDLAARNVLVGENNICKVADFGLARVI-KEDIYE 159

Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
              G +      APE  +    + K DV+SFG+LL E+V
Sbjct: 160 AREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIV 198

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 55.9 bits (133), Expect = 2e-09
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 11/105 (10%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN-FFPKAADFGLAKLYNREHTH 137
           +   I       + YLH    + I+H DIKPE++LLD +    K  DFGLAKL     + 
Sbjct: 102 EALFILAQILSALEYLHS---KGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGST 158

Query: 138 ITSTGRRR----TPGCEAPELWMPYS---VTQKCDVFSFGMLLFE 175
            +          TPG  APE+ +  S    +   D++S G+ L+E
Sbjct: 159 SSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYE 203

Length = 384

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 14/106 (13%)

Query: 74  ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR 133
           ++   Q     +   +G+ YL E   +  VH D+   +VL+ E+   K +DFGLAK  ++
Sbjct: 98  VITLAQQLGFALDVCEGMEYLEE---KNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQ 154

Query: 134 EHTHITSTGR---RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
                  +G+   + T    APE       + K DV+SFG+LL+E+
Sbjct: 155 GQD----SGKLPVKWT----APEALREKKFSTKSDVWSFGILLWEI 192

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 13/95 (13%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHITSTGRRRTP 147
           KG++YLH    +KI+H DIKP ++LL      K  DFG++ +L N      T TG   T 
Sbjct: 116 KGLSYLHS---RKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAG--TFTG---TS 167

Query: 148 GCEAPE--LWMPYSVTQKCDVFSFGMLLFEVVGRR 180
              APE     PYS+T   DV+S G+ L EV   R
Sbjct: 168 FYMAPERIQGKPYSIT--SDVWSLGLTLLEVAQNR 200

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGR--RRT 146
           +G+AYLH      IVH DIKP ++ LD N   K  DFG A       T +    +    T
Sbjct: 110 EGLAYLHS---HGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGT 166

Query: 147 PGCEAPELWMPYSVTQK---CDVFSFGMLLFEVV-GRR 180
           P   APE+             D++S G ++ E+  G+R
Sbjct: 167 PAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKR 204

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 53.8 bits (129), Expect = 6e-09
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 4/110 (3%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL  ++       L  + +   +G+AYL       ++H D+   + L+ EN   K +DFG
Sbjct: 89  YLRAQRGKFSQETLLGMCLDVCEGMAYLESSN---VIHRDLAARNCLVGENQVVKVSDFG 145

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           + +    +  + +STG +      +PE++     + K DV+SFG+L++EV
Sbjct: 146 MTRFV-LDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEV 194

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 54.0 bits (131), Expect = 7e-09
 Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 6/52 (11%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTH 137
           +G+AY H     +I+H D+KP+++L++ +   K ADFGLA+ +    R +TH
Sbjct: 109 RGLAYCH---SHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTH 157

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 53.9 bits (129), Expect = 8e-09
 Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 18/105 (17%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL +     + G+ YL E   ++ +H D+   +VL+ EN   K ADFGL++    E  ++
Sbjct: 120 QLLQFASDVATGMQYLSE---KQFIHRDLAARNVLVGENLASKIADFGLSR---GEEVYV 173

Query: 139 TSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
             T  R       P  WM      YSV T K DV+SFG+LL+E+V
Sbjct: 174 KKTMGR------LPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIV 212

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 53.5 bits (128), Expect = 8e-09
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL ++    + G+AY+    R   VH D++  ++L+ EN   K ADFGLA+L   ++ + 
Sbjct: 103 QLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLI-EDNEYT 158

Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
              G +      APE  +    T K DV+SFG+LL E+  + R
Sbjct: 159 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 201

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 53.7 bits (130), Expect = 9e-09
 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 20/118 (16%)

Query: 71  KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL 130
           K  +L    ++   + T +G+ YLH      I+H D+KP ++L+  +   K ADFGLA+ 
Sbjct: 95  KSIVLTPADIKSYMLMTLRGLEYLH---SNWILHRDLKPNNLLIASDGVLKLADFGLARS 151

Query: 131 Y---NREHTH--ITSTGRRRTPGCEAPELWM---PYSVTQKCDVFSFGMLLFEVVGRR 180
           +   NR+ TH  +T   R       APEL      Y V    D++S G +  E++ R 
Sbjct: 152 FGSPNRKMTHQVVTRWYR-------APELLFGARHYGVG--VDMWSVGCIFAELLLRV 200

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 53.4 bits (129), Expect = 9e-09
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 12/70 (17%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN----REHTHITSTGRR 144
           KG+AY+H      I+H D+KP ++L+  +   K ADFGLA+L++    R ++H  +T   
Sbjct: 110 KGVAYMHAN---GIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWY 166

Query: 145 RTPGCEAPEL 154
           R     APEL
Sbjct: 167 R-----APEL 171

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 4/107 (3%)

Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   QL ++    + G+AY+    R   +H D++  ++L+ +N   K ADFGLA+L   +
Sbjct: 99  LKLPQLVDMAAQIADGMAYIE---RMNYIHRDLRAANILVGDNLVCKIADFGLARLI-ED 154

Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE  +    T K DV+SFG+LL E+V + R
Sbjct: 155 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGR 201

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 13/88 (14%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK--LYNREHTHITSTGRRRTP 147
           G+  LH+   + I+H DIKPE++L+D+    K  DFGL++  L N++           TP
Sbjct: 109 GVEDLHQ---RGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKKFVG--------TP 157

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFE 175
              APE  +     +  D +S G ++FE
Sbjct: 158 DYLAPETILGVGDDKMSDWWSLGCVIFE 185

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 53.3 bits (129), Expect = 1e-08
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
           +G+ YLH      I+H DIK  ++L++ +   K ADFGLA+ Y + +
Sbjct: 111 EGLQYLH---SNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRN 154

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 8/92 (8%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHITSTGRRRTPG 148
           G+ +LH+    +IV+ D+KPE+VLLD++   + +D GLA +L   +       GR  TPG
Sbjct: 107 GLEHLHQR---RIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIK----GRAGTPG 159

Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
             APE+          D F+ G  L+E++  R
Sbjct: 160 YMAPEVLQGEVYDFSVDWFALGCTLYEMIAGR 191

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 17/97 (17%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHTHITSTGRRRT 146
           + G+AYL     +K VH D+   + ++ E+   K  DFG+ + +Y  ++      G    
Sbjct: 129 ADGMAYLAA---KKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGL--- 182

Query: 147 PGCEAPELWM-PYSV-----TQKCDVFSFGMLLFEVV 177
                P  WM P S+     T K DV+SFG++L+E+ 
Sbjct: 183 ----LPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMA 215

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 32/172 (18%)

Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGPFYL----LCKKNILGF 77
           D ME+++ ++  +  + I   N   L+G    E          PFY+    +   N+L +
Sbjct: 42  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP---------PFYIITEFMTYGNLLDY 92

Query: 78  GQLREIEVST-------------SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAAD 124
             LRE                  S  + YL    ++  +H D+   + L+ EN   K AD
Sbjct: 93  --LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVAD 147

Query: 125 FGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           FGL++L     T+    G +      APE       + K DV++FG+LL+E+
Sbjct: 148 FGLSRLM-TGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEI 198

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 9/113 (7%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L  KKN L   +L ++ +  + G+ YL  +     +H D+   + L+ EN   K +DFG
Sbjct: 82  FLRKKKNRLTVKKLLQMSLDAAAGMEYLESKN---CIHRDLAARNCLVGENNVLKISDFG 138

Query: 127 LAKLYNREHTHI--TSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           +++    E   I   S G ++ P    APE       T + DV+S+G+LL+E 
Sbjct: 139 MSR---EEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWET 188

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 16/113 (14%)

Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      IV+ D+KPE++LLD + + K  DFG AK   +  T+ T  G   TP   AP
Sbjct: 116 YLHSL---DIVYRDLKPENLLLDSDGYIKITDFGFAK-RVKGRTY-TLCG---TPEYLAP 167

Query: 153 ELWMPYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKW 197
           E+ +     +  D ++ G+L++E + G           + ++I EG+  FP +
Sbjct: 168 EIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILEGKVRFPSF 220

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 14/129 (10%)

Query: 57  IKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE 116
           I  ++ +G       K+ L   QL        +G+AYLH    Q  +H D+   +VLLD 
Sbjct: 86  IMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHS---QHYIHRDLAARNVLLDN 142

Query: 117 NFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKC------DVFSFG 170
           +   K  DFGLAK     H +     R R  G ++P  W      ++       DV+SFG
Sbjct: 143 DRLVKIGDFGLAKAVPEGHEYY----RVREDG-DSPVFWYAVECLKENKFSYASDVWSFG 197

Query: 171 MLLFEVVGR 179
           + L+E++  
Sbjct: 198 VTLYELLTH 206

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 52.3 bits (125), Expect = 3e-08
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           S+G+ YL E    K+VH D+   +VL+ E    K +DFGL++    E +++  +  R   
Sbjct: 137 SRGMQYLAE---MKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPV 193

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
              A E    +  T + DV+SFG+LL+E+V
Sbjct: 194 KWMAIESLFDHIYTTQSDVWSFGVLLWEIV 223

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 52.3 bits (125), Expect = 3e-08
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 3/102 (2%)

Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           + F  L       ++G+ YL     QK +H D+   +VL+ EN   K ADFGLA+  N  
Sbjct: 134 MTFKDLVSCTYQVARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNI 190

Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
             +  +T  R      APE       T + DV+SFG+L++E+
Sbjct: 191 DYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 232

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 13/97 (13%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN-REHTHITS---TGRR 144
           +G+ YLH      I+H DIKP ++L++ N   K  DFGLA++    E  H+T    T   
Sbjct: 114 RGLKYLHS---AGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYY 170

Query: 145 RTPGCEAPELWM-PYSVTQKCDVFSFGMLLFEVVGRR 180
           R     APE+ M     T   D++S G +  E++GRR
Sbjct: 171 R-----APEILMGSRHYTSAVDIWSVGCIFAELLGRR 202

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 51.9 bits (124), Expect = 3e-08
 Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 4/107 (3%)

Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L    L ++    + G+AY+    R   +H D++  ++L+ +    K ADFGLA+L   +
Sbjct: 99  LKLPNLVDMAAQVAAGMAYIE---RMNYIHRDLRSANILVGDGLVCKIADFGLARLI-ED 154

Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE  +    T K DV+SFG+LL E+V + R
Sbjct: 155 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGR 201

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 16/97 (16%)

Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL-AKLYNREHTHI 138
           LRE    T +G+AYLHE    K++H DIK +++LL +N   K  DFG+ A+L +      
Sbjct: 119 LRE----TLRGLAYLHE---NKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRN 171

Query: 139 TSTGRRRTPGCEAPEL-----WMPYSVTQKCDVFSFG 170
           T  G   TP   APE+         S   + DV+S G
Sbjct: 172 TFIG---TPYWMAPEVIACDEQPDASYDARSDVWSLG 205

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 52.0 bits (124), Expect = 3e-08
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 18/105 (17%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL       ++G+ YL +   ++ +H D+   ++L+ EN+  K ADFGL++    +  ++
Sbjct: 113 QLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSR---GQEVYV 166

Query: 139 TSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
             T  R       P  WM      YSV T   DV+S+G+LL+E+V
Sbjct: 167 KKTMGR------LPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIV 205

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 11/92 (11%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITS-TGRRRTP 147
           +G+ YLH    Q ++H DIK +++LL ++   K ADFG A    +E +   S  G   TP
Sbjct: 127 QGLEYLH---SQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVG---TP 180

Query: 148 GCEAPELWM--PYSVTQKCDVFSFGMLLFEVV 177
              APE+     Y    K D++S G++  E+ 
Sbjct: 181 YWMAPEVIKRKDYG--PKVDIWSLGIMCIEMA 210

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 51.9 bits (124), Expect = 4e-08
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 5/103 (4%)

Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNR 133
           L F  L       ++G+ YL     QK +H D+   +VL+ E+   K ADFGLA+ ++N 
Sbjct: 131 LTFKDLVSCAYQVARGMEYL---ASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNI 187

Query: 134 EHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           ++   T+ GR       APE       T + DV+SFG+LL+E+
Sbjct: 188 DYYKKTTNGRLPVKWM-APEALFDRVYTHQSDVWSFGVLLWEI 229

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 51.6 bits (123), Expect = 4e-08
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 4/99 (4%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           +L +     ++G+AY+    R+  +H D++  +VL+ E+   K ADFGLA++   ++ + 
Sbjct: 104 KLIDFSAQIAEGMAYIE---RKNYIHRDLRAANVLVSESLMCKIADFGLARVI-EDNEYT 159

Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
              G +      APE     S T K DV+SFG+LL+E+V
Sbjct: 160 AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIV 198

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 51.5 bits (123), Expect = 5e-08
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 18/105 (17%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL       ++G+ YL +   ++ +H D+   ++L+ EN+  K ADFGL++    +  ++
Sbjct: 125 QLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSR---GQEVYV 178

Query: 139 TSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
             T  R       P  WM      YSV T   DV+S+G+LL+E+V
Sbjct: 179 KKTMGR------LPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIV 217

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 13/95 (13%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT-P 147
           KG+ YLH    + I+H DIK  ++L+D     K +DFG++K   +   +  ST      P
Sbjct: 117 KGLNYLHN---RGIIHRDIKGANILVDNKGGIKISDFGISK---KLEANSLSTKTNGARP 170

Query: 148 GCEAPELWMPYSV------TQKCDVFSFGMLLFEV 176
             +    WM   V      T+K D++S G L+ E+
Sbjct: 171 SLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEM 205

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 50.9 bits (122), Expect = 6e-08
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 7/99 (7%)

Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-TSTGRRR 145
               ++Y+H+     I+H DIK  ++ L +    K  DFG++K+   E++   T  G   
Sbjct: 110 IVSAVSYIHKA---GILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVG--- 163

Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLE 184
           TP   +PEL        K D+++ G +L+E++  +R  +
Sbjct: 164 TPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFD 202

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 22/99 (22%)

Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR- 145
           T KG+AYLHE      +H DIK  ++LL E+   K ADFG++         +T+T  +R 
Sbjct: 110 TLKGLAYLHE---TGKIHRDIKGANILLTEDGDVKLADFGVS-------AQLTATIAKRK 159

Query: 146 ----TPGCEAPE-----LWMPYSVTQKCDVFSFGMLLFE 175
               TP   APE         Y    KCD+++ G+   E
Sbjct: 160 SFIGTPYWMAPEVAAVERKGGY--DGKCDIWALGITAIE 196

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 51.0 bits (122), Expect = 8e-08
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 20/114 (17%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           +G+ Y+H      +VH D+KP ++L++EN   K  DFGLA++ + + T   ST   R P 
Sbjct: 119 RGLKYVHS---AGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAP- 174

Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGREEV 202
            E    W  Y V  + D++S G +  E++           EG+  FP  G++ V
Sbjct: 175 -EIMLTWQKYDV--EVDIWSAGCIFAEML-----------EGKPLFP--GKDHV 212

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 4/98 (4%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL E+     +G+AYL  E +Q I H D+   + L+D+    K +DFGL++ Y  +  + 
Sbjct: 101 QLLEMCKDVCEGMAYL--ESKQFI-HRDLAARNCLVDDQGCVKVSDFGLSR-YVLDDEYT 156

Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           +S G +       PE+ +    + K DV++FG+L++EV
Sbjct: 157 SSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEV 194

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 15/117 (12%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL-YNREHTHITSTGRRRTPG 148
           G+ +LH   ++ I++ D+K ++VLLD++   K ADFG+ K   N E    T  G   TP 
Sbjct: 108 GLQFLH---KKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCG---TPD 161

Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKW 197
             APE+       +  D +SFG+LL+E ++G+          L   I   +  FP+W
Sbjct: 162 YIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSILNDRPHFPRW 218

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 19/96 (19%)

Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT 139
           LRE+      G+ YLHE   +  +H DIK  ++LL E    K ADFG++         +T
Sbjct: 104 LREV----LLGLEYLHE---EGKIHRDIKAANILLSEEGDVKLADFGVS-------GQLT 149

Query: 140 STGRRR-----TPGCEAPELWMPYSVTQKCDVFSFG 170
           ST  +R     TP   APE+       +K D++S G
Sbjct: 150 STMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLG 185

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITS----TGRRR 145
           G+ YLH      IVH DIK  ++L D     K  DFG +K      +  T     TG   
Sbjct: 116 GVEYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTG--- 169

Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           TP   +PE+       +K DV+S G  + E++
Sbjct: 170 TPYWMSPEVISGEGYGRKADVWSVGCTVVEML 201

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 17/109 (15%)

Query: 80  LREIEVS-----TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L+E+E++       +G+AYLH   R   +H DIK  ++LL E    K ADFG A L +  
Sbjct: 112 LQEVEIAAICHGALQGLAYLHSHER---IHRDIKAGNILLTEPGTVKLADFGSASLVSPA 168

Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQ---KCDVFSFGMLLFEVVGRR 180
           ++ +       TP   APE+ +     Q   K DV+S G+   E+  R+
Sbjct: 169 NSFVG------TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERK 211

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 18/124 (14%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL +  +  ++G+ YL     +K+VH D+   ++L+ E+   K +DFGLA++        
Sbjct: 101 QLLQFSLDVAEGMEYLES---KKLVHRDLAARNILVSEDGVAKVSDFGLARV-GSMGVDN 156

Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWG 198
           +    + T    APE       + K DV+S+G+LL+EV           S G+  +PK  
Sbjct: 157 SKLPVKWT----APEALKHKKFSSKSDVWSYGVLLWEV----------FSYGRAPYPKMS 202

Query: 199 REEV 202
            +EV
Sbjct: 203 LKEV 206

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           +G+ +LH  C   IVH D+KPE++L+      K ADFGLA++Y+     +  T    T  
Sbjct: 119 RGLDFLHANC---IVHRDLKPENILVTSGGQVKLADFGLARIYS---CQMALTPVVVTLW 172

Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
             APE+ +  +     D++S G +  E+  R+
Sbjct: 173 YRAPEVLLQSTYATPVDMWSVGCIFAEMFRRK 204

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 9/88 (10%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTP 147
           G+ YLHE    KIV+ D+K +++LLD   F K ADFGL K         TST  G   TP
Sbjct: 113 GLQYLHE---NKIVYRDLKLDNLLLDTEGFVKIADFGLCK-EGMGFGDRTSTFCG---TP 165

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFE 175
              APE+    S T+  D +  G+L++E
Sbjct: 166 EFLAPEVLTETSYTRAVDWWGLGVLIYE 193

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 30/112 (26%)

Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT-------------- 136
           +  +H   +   +H DIKP+++L+D +   K ADFGL K  N+                 
Sbjct: 114 LDSVH---KLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFR 170

Query: 137 -----HITSTGRRR--------TPGCEAPELWMPYSVTQKCDVFSFGMLLFE 175
                      +RR        TP   APE+        +CD +S G++L+E
Sbjct: 171 DNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYE 222

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 7/92 (7%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST----GRR 144
            G+AYLH  C   +VH DIK  +V+L  N   K  DFG A+       H T +       
Sbjct: 113 DGVAYLHNNC---VVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMH 169

Query: 145 RTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            TP   APE+       +K D++S G  +FE+
Sbjct: 170 GTPYWMAPEVINESGYGRKSDIWSIGCTVFEM 201

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 18/99 (18%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R +TH   T   R
Sbjct: 111 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 167

Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 168 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 198

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 18/103 (17%)

Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL-AKLYNREHTHI 138
           L+E      KG+ YLH       +H DIK  ++LL E+   K ADFG+ A L        
Sbjct: 108 LKE----VLKGLEYLH---SNGQIHRDIKAGNILLGEDGSVKIADFGVSASLA----DGG 156

Query: 139 TSTGRRR-----TPGCEAPELWMP-YSVTQKCDVFSFGMLLFE 175
             T + R     TP   APE+    +    K D++SFG+   E
Sbjct: 157 DRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIE 199

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH+E  ++IVH D+ P +++L E+      DFGLAK    E + +TS        C  P
Sbjct: 128 YLHKE--KRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPE-SKLTSVVGTILYSC--P 182

Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVV 177
           E+       +K DV++FG +L+++ 
Sbjct: 183 EIVKNEPYGEKADVWAFGCILYQMC 207

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 26/115 (22%)

Query: 73  NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLY 131
           +ILG     ++ V+  K + YL E+    ++H D+KP ++LLD +   K  DFG++ +L 
Sbjct: 114 DILG-----KMTVAIVKALHYLKEK--HGVIHRDVKPSNILLDASGNVKLCDFGISGRL- 165

Query: 132 NREHTHITSTGRRRTPGCEA---PELWMP------YSVTQKCDVFSFGMLLFEVV 177
                 + S  + R+ GC A   PE   P      Y +  + DV+S G+ L E+ 
Sbjct: 166 ------VDSKAKTRSAGCAAYMAPERIDPPDPNPKYDI--RADVWSLGISLVELA 212

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           G+ +LH+   ++I++ D+KPE+VLLD +   + +D GLA       +   + G   TPG 
Sbjct: 109 GLEHLHQ---RRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQS--KTKGYAGTPGF 163

Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            APEL          D F+ G+ L+E++  R
Sbjct: 164 MAPELLQGEEYDFSVDYFALGVTLYEMIAAR 194

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 18/101 (17%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR---EHT-----HITS 140
           +G+ Y+H      ++H D+KP ++L++E+   +  DFG+A+  +    EH      ++ +
Sbjct: 118 RGLKYIHSAN---VIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVAT 174

Query: 141 TGRRRTPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRR 180
              R      APEL +     T   D++S G +  E++GRR
Sbjct: 175 RWYR------APELLLSLPEYTTAIDMWSVGCIFAEMLGRR 209

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 21/115 (18%)

Query: 60  FLAMGPFYLLCKKNILGFGQLREIEVSTS-----KGIAYLHEECRQKIVHYDIKPESVLL 114
            +  G    L KK    +G   E  +         G+ YLH+   +  VH DIK  ++L+
Sbjct: 83  LVPGGSLAKLLKK----YGSFPEPVIRLYTRQILLGLEYLHD---RNTVHRDIKGANILV 135

Query: 115 DENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSF 169
           D N   K ADFG+AK        +      ++   +    WM   V  +   +  
Sbjct: 136 DTNGVVKLADFGMAK-------QVVEFSFAKS--FKGSPYWMAPEVIAQQGGYGL 181

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 48.8 bits (116), Expect = 4e-07
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 5/115 (4%)

Query: 63  MGPFYLLCKKNI-LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPK 121
           +GP     +KN  +    + E+    S G+ YL E      VH D+   +VLL    + K
Sbjct: 79  LGPLNKFLQKNKHVTEKNITELVHQVSMGMKYLEE---TNFVHRDLAARNVLLVTQHYAK 135

Query: 122 AADFGLAKLYNREHTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFE 175
            +DFGL+K    +  +  +    + P    APE    Y  + K DV+SFG+L++E
Sbjct: 136 ISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWE 190

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 48.9 bits (116), Expect = 4e-07
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 13/95 (13%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   T  
Sbjct: 131 RGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVATRW 182

Query: 149 CEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
             APE+   WM Y+ T   D++S G ++ E++  R
Sbjct: 183 YRAPEIMLNWMHYNQT--VDIWSVGCIMAELLTGR 215

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 5/98 (5%)

Query: 85  VSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRR 144
           V  +KG++YL E   +++VH D+   +VL+      K  DFGLAKL + +     + G +
Sbjct: 116 VQIAKGMSYLEE---KRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGK 172

Query: 145 RTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV--GRR 180
                 A E  +    T K DV+S+G+ ++E++  G +
Sbjct: 173 VPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAK 210

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 17/97 (17%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHTHITSTGRRRT 146
           ++G+ +L     +K +H D+   +VL+ E+   K ADFGLA+ +++ ++   T+ GR   
Sbjct: 142 ARGMEFLAS---KKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGR--- 195

Query: 147 PGCEAPELWMPYSV------TQKCDVFSFGMLLFEVV 177
                P  WM          T + DV+SFG+LL+E+ 
Sbjct: 196 ----LPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIF 228

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 94  LHEECRQKIVHYDIKPESVLLDEN-FFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           LH    + I+H D+K +++LLD++    K  DFG++K+ + +    T  G   TP   +P
Sbjct: 114 LHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYTVVG---TPCYISP 170

Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE 186
           EL       QK D+++ G +L+E+   +R  E  
Sbjct: 171 ELCEGKPYNQKSDIWALGCVLYELASLKRAFEAA 204

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 48.4 bits (116), Expect = 5e-07
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 11/106 (10%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH--THITSTGRRRT 146
           +G+ +LH      IVH D+KP+++L+  +   K ADFGLA++Y+ E   T +  T   R 
Sbjct: 118 RGVDFLHSHR---IVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMALTSVVVTLWYR- 173

Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQE 192
               APE+ +  S     D++S G +  E+  RRR L +  SE  +
Sbjct: 174 ----APEVLLQSSYATPVDMWSVGCIFAELF-RRRPLFRGTSEADQ 214

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 48.3 bits (115), Expect = 6e-07
 Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 3/44 (6%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR 133
           GIAYLH   R+ IVH DIKP ++L++     K ADFG++++  +
Sbjct: 180 GIAYLH---RRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQ 220

Length = 353

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 18/94 (19%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR--- 145
           KG+ YLH +  + I+H DIKP ++L++     K ADFG++K        + +T  +    
Sbjct: 110 KGLDYLHTK--RHIIHRDIKPSNLLINSKGEVKIADFGISK-------VLENTLDQCNTF 160

Query: 146 --TPGCEAPE--LWMPYSVTQKCDVFSFGMLLFE 175
             T    +PE      YS     D++S G+ L E
Sbjct: 161 VGTVTYMSPERIQGESYSY--AADIWSLGLTLLE 192

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 48.1 bits (114), Expect = 6e-07
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 3/102 (2%)

Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L F  L       ++G+ YL     +K +H D+   +VL+ E+   K ADFGLA+  +  
Sbjct: 137 LSFKDLVSCAYQVARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI 193

Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
             +  +T  R      APE       T + DV+SFG+LL+E+
Sbjct: 194 DYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI 235

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 48.1 bits (114), Expect = 7e-07
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 15/142 (10%)

Query: 42  DNFSNLVG---SEDTETYI-KGFLAMGPF--YLLCK-KNILGFGQLREIEVSTSKGIAYL 94
            N   L+G    E    YI   ++A G    YL  + +++LG   L +  +   + + YL
Sbjct: 59  SNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYL 118

Query: 95  HEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL 154
                   VH D+   +VL+ E+   K +DFGL K    E +    TG+       APE 
Sbjct: 119 EA---NNFVHRDLAARNVLVSEDNVAKVSDFGLTK----EASSTQDTGKLPVK-WTAPEA 170

Query: 155 WMPYSVTQKCDVFSFGMLLFEV 176
                 + K DV+SFG+LL+E+
Sbjct: 171 LREKKFSTKSDVWSFGILLWEI 192

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 47.7 bits (113), Expect = 7e-07
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 11/90 (12%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-ITSTGRRRTPG 148
           G+ ++HE   ++++H DIK +++ L +N   K  DFG A+L      +  T  G   TP 
Sbjct: 112 GVQHIHE---KRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVG---TPY 165

Query: 149 CEAPELW--MPYSVTQKCDVFSFGMLLFEV 176
              PE+W  MPY+   K D++S G +L+E+
Sbjct: 166 YVPPEIWENMPYN--NKSDIWSLGCILYEL 193

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 47.7 bits (113), Expect = 8e-07
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 26/119 (21%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI----TSTGRRR 145
           G+  LH+E   +IV+ D+KPE++LLD++   + +D GLA        H+    T  GR  
Sbjct: 114 GLEDLHQE---RIVYRDLKPENILLDDHGHIRISDLGLA-------VHVPEGQTIKGRVG 163

Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG------------RRRNLEKEISEGQE 192
           T G  APE+      T   D ++ G LL+E++             +R  +E+ + E QE
Sbjct: 164 TVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVQE 222

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 47.4 bits (113), Expect = 9e-07
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 16/111 (14%)

Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL-AKLYNREHT 136
            Q+R +     + + +LH     K++H D+K  ++LL  +   K ADFG+ AK  +    
Sbjct: 103 PQIRYVCRQMLEALNFLHS---HKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQK 159

Query: 137 HITSTGRRRTPGCEAPELWM-------PYSVTQKCDVFSFGMLLFEVVGRR 180
             T  G   TP   APE+         PY    K D++S G+ L E+    
Sbjct: 160 RDTFIG---TPYWMAPEVVACETFKDNPYD--YKADIWSLGITLIELAQME 205

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 18/114 (15%)

Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH    + I++ D+KPE++LLD     K  DFG AK    + T  T  G   TP   AP
Sbjct: 133 YLHS---KDIIYRDLKPENLLLDNKGHVKVTDFGFAKKV-PDRTF-TLCG---TPEYLAP 184

Query: 153 ELWMPYSVTQKCDVFSFGMLLFE-VVGRR--------RNLEKEISEGQEWFPKW 197
           E+       +  D ++ G+LL+E + G          R  EK I  G+  FP W
Sbjct: 185 EVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEK-ILAGRLKFPNW 237

Length = 329

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 12/110 (10%)

Query: 73  NILGFGQLREIEVSTS-----KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL 127
           ++L  G   E +++T      KG+ YLH E   K +H DIK  +VLL E    K ADFG+
Sbjct: 91  DLLRAGPFDEFQIATMLKEILKGLDYLHSE---KKIHRDIKAANVLLSEQGDVKLADFGV 147

Query: 128 A-KLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           A +L + +    T  G   TP   APE+    +   K D++S G+   E+
Sbjct: 148 AGQLTDTQIKRNTFVG---TPFWMAPEVIQQSAYDSKADIWSLGITAIEL 194

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 9/103 (8%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           GI +LH      IV+ D+KPE+VLLD+    + +D GLA          T T R  T G 
Sbjct: 107 GILHLHS---MDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGK---TITQRAGTNGY 160

Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRR---RNLEKEISE 189
            APE+      +   D F+ G  ++E+V  R   ++ ++++++
Sbjct: 161 MAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAK 203

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY-NR 133
           L   +L ++    ++G+A++    R+  +H D++  ++L+ E    K ADFGLA+L  + 
Sbjct: 99  LTINKLIDMAAQIAEGMAFIE---RKNYIHRDLRAANILVSETLCCKIADFGLARLIEDN 155

Query: 134 EHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           E+T     G +      APE     + T K DV+SFG+LL E+V
Sbjct: 156 EYT--AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIV 197

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)

Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHT 136
           GQL  +    + G+ YL E      VH D+   ++L++ N   K +DFGL++ L + E T
Sbjct: 106 GQLVGMLRGIASGMKYLSEMN---YVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEAT 162

Query: 137 HITSTGR---RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           + T  G+   R T    APE       T   DV+SFG++++EV
Sbjct: 163 YTTKGGKIPIRWT----APEAIAYRKFTSASDVWSFGIVMWEV 201

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 10/109 (9%)

Query: 73  NILGFGQLREIEVSTS-----KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL 127
           ++L  G L E +++T      KG+ YLH E   K +H DIK  +VLL E+   K ADFG+
Sbjct: 91  DLLEPGPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGV 147

Query: 128 AKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           A       T I       TP   APE+    +   K D++S G+   E+
Sbjct: 148 AG--QLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIEL 194

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 17/95 (17%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR--- 145
           K +++LH    Q ++H DIK +S+LL  +   K +DFG     ++E        RR+   
Sbjct: 126 KALSFLHA---QGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKE------VPRRKSLV 176

Query: 146 -TPGCEAPELW--MPYSVTQKCDVFSFGMLLFEVV 177
            TP   APE+   +PY    + D++S G+++ E+V
Sbjct: 177 GTPYWMAPEVISRLPYGT--EVDIWSLGIMVIEMV 209

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 21/124 (16%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK--LYNREHTHITSTGRRRTP 147
           G+ +LHE   + I++ D+K ++VLLD     K ADFG+ K  +     T  T  G   TP
Sbjct: 108 GLQFLHE---RGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTS-TFCG---TP 160

Query: 148 GCEAPEL--WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE--------ISEGQEWFPKW 197
              APE+  + PY      D ++ G+LL+E++  +   E +        I E +  +P+W
Sbjct: 161 DYIAPEILSYQPYGPA--VDWWALGVLLYEMLAGQSPFEGDDEDELFQSILEDEVRYPRW 218

Query: 198 GREE 201
             +E
Sbjct: 219 LSKE 222

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 4/103 (3%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           +L +     ++G+A++    ++  +H D++  ++L+  +   K ADFGLA++   ++ + 
Sbjct: 103 KLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVI-EDNEYT 158

Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
              G +      APE     S T K DV+SFG+LL E+V   R
Sbjct: 159 AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGR 201

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 17/105 (16%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           Q+  + ++  K ++ LH    Q ++H DIK +S+LL  +   K +DFG     ++E    
Sbjct: 117 QIAAVCLAVLKALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE---- 169

Query: 139 TSTGRRR----TPGCEAPELW--MPYSVTQKCDVFSFGMLLFEVV 177
               RR+    TP   APEL   +PY    + D++S G+++ E+V
Sbjct: 170 --VPRRKSLVGTPYWMAPELISRLPYG--PEVDIWSLGIMVIEMV 210

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 5/103 (4%)

Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNR 133
           L F  L       ++G+ YL     ++ +H D+   +VL+ E+   K ADFGLA+ +++ 
Sbjct: 131 LSFKDLVSCAYQVARGMEYLES---RRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDI 187

Query: 134 EHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           ++   TS GR       APE       T + DV+SFG+L++E+
Sbjct: 188 DYYKKTSNGRLPVKWM-APEALFDRVYTHQSDVWSFGILMWEI 229

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 17/103 (16%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE---HTHITSTGRRRT 146
           GI YLHE     I+H DIK  ++L+D     K ADFGLA+ Y+            G R+ 
Sbjct: 127 GINYLHE---NHILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKY 183

Query: 147 PGC------EAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
                      PEL      Y  T   D++  G +  E+  RR
Sbjct: 184 TNLVVTRWYRPPELLLGERRY--TTAVDIWGIGCVFAEMFTRR 224

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 7/111 (6%)

Query: 83  IEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTG 142
           IE    +G+ YLH    Q+I+H D+K E++ +++       D G A+        +   G
Sbjct: 162 IEKQILEGLRYLHA---QRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPAFLGLAG 218

Query: 143 RRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNL-EKEISEGQE 192
              T    APE+        K D++S G++LFE++     + E   S  +E
Sbjct: 219 TVET---NAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEE 266

Length = 357

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 16/98 (16%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +GIAY H     +++H D+KP+++L+D     K ADFGLA+ +    R +TH   T   R
Sbjct: 110 QGIAYCHS---HRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTHEVVTLWYR 166

Query: 146 TPGCEAPELWM---PYSVTQKCDVFSFGMLLFEVVGRR 180
                APE+ +    YS     D++S G +  E+V RR
Sbjct: 167 -----APEILLGSRQYSTP--VDIWSIGCIFAEMVNRR 197

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 26/116 (22%)

Query: 71  KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-K 129
            ++ILG     +I VS  K + YLH   +  ++H D+KP +VL++ N   K  DFG++  
Sbjct: 101 PEDILG-----KIAVSIVKALEYLHS--KLSVIHRDVKPSNVLINRNGQVKLCDFGISGY 153

Query: 130 LYNREHTHITSTGRRRTPGCE---APELWMP------YSVTQKCDVFSFGMLLFEV 176
           L +       S  +    GC+   APE   P      Y V  K DV+S G+ + E+
Sbjct: 154 LVD-------SVAKTIDAGCKPYMAPERINPELNQKGYDV--KSDVWSLGITMIEL 200

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 13/105 (12%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
            L +I V+  KG+ YLHE  + KI+H D+KP ++L++     K  DFG++         +
Sbjct: 101 ILGKIAVAVLKGLTYLHE--KHKIIHRDVKPSNILVNSRGQIKLCDFGVS-------GQL 151

Query: 139 TSTGRRRTPGCE---APELWMPYSVTQKCDVFSFGMLLFEV-VGR 179
            ++  +   G     APE       + K D++S G+ L E+  GR
Sbjct: 152 VNSLAKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGR 196

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K +L    L       +KG+ +L     +K +H D+   ++LL EN   K  DFGLA+  
Sbjct: 173 KKVLTLEDLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSENNVVKICDFGLARDI 229

Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            ++  ++     R      APE       T + DV+SFG+LL+E+
Sbjct: 230 YKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 274

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           +G+ YLH      ++H D+KP ++L++ N   K  DFGLA    R            T  
Sbjct: 114 RGLKYLH---SANVIHRDLKPSNILVNSNCDLKICDFGLA----RGVDPDEDEKGFLTEY 166

Query: 149 CE-----APEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
                  APEL      Y  T+  D++S G +  E++ R+
Sbjct: 167 VVTRWYRAPELLLSSSRY--TKAIDIWSVGCIFAELLTRK 204

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 9/88 (10%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTP 147
           G+A+LH    +KI+H DIK  ++ LD     K  D G+AKL + ++T+  +T  G   TP
Sbjct: 113 GLAHLH---SKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLS-DNTNFANTIVG---TP 165

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFE 175
              +PEL       +K DV++ G++L+E
Sbjct: 166 YYLSPELCEDKPYNEKSDVWALGVVLYE 193

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 26/119 (21%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHTHITS---TGRR 144
           + IAY H      I+H DIKPE++L+ E+   K  DFG A+ L  R  + +T    T   
Sbjct: 111 QAIAYCH---SHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWY 167

Query: 145 RTPGCEAPELWMPYSVTQK-CDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGREEV 202
           R     APEL +  +   K  DV++ G ++            E+ +G+  FP  G  ++
Sbjct: 168 R-----APELLVGDTNYGKPVDVWAIGCIM-----------AELLDGEPLFP--GDSDI 208

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 13/92 (14%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           KG+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+      T    TG   T  
Sbjct: 129 KGLKYIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLAR-----QTDSEMTGYVVTRW 180

Query: 149 CEAPEL---WMPYSVTQKCDVFSFGMLLFEVV 177
             APE+   WM Y  TQ  D++S G ++ E++
Sbjct: 181 YRAPEVILNWMHY--TQTVDIWSVGCIMAEML 210

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 23/166 (13%)

Query: 43  NFSNLVGSEDTETYIKGFLAMGPFYLL--CKKNILGFGQ--LREIEVSTSKGIAYLHEEC 98
           N    +G E TE Y+  FL   P   +  C +    F +  +R       +G+AYLH   
Sbjct: 69  NIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLH--- 125

Query: 99  RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPY 158
            + I+H D+K +++L+D +   K +DFG++K  +  + +  +   + +    APE+   Y
Sbjct: 126 SKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSY 185

Query: 159 --SVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGREEV 202
               + K D++S G ++ E+   RR               W  EE 
Sbjct: 186 SQGYSAKVDIWSLGCVVLEMFAGRR--------------PWSDEEA 217

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 45.8 bits (108), Expect = 4e-06
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 6/92 (6%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           +G+ +LH     ++VH D+KP+++L+  +   K ADFGLA++Y+ +   +  T    T  
Sbjct: 121 RGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQ---MALTSVVVTLW 174

Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
             APE+ +  S     D++S G +  E+  R+
Sbjct: 175 YRAPEVLLQSSYATPVDLWSVGCIFAEMFRRK 206

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 45.8 bits (108), Expect = 4e-06
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 17/109 (15%)

Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           LG  Q+  I    + G+ YL     Q  VH D+   + L+  N   K  DFG+++     
Sbjct: 120 LGLSQMLHIASQIASGMVYL---ASQHFVHRDLATRNCLVGANLLVKIGDFGMSR----- 171

Query: 135 HTHITSTGRRRTPG-CEAPELWMP------YSVTQKCDVFSFGMLLFEV 176
              + ST   R  G    P  WMP         T + DV+SFG++L+E+
Sbjct: 172 --DVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEI 218

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 16/97 (16%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRRT 146
           GI + H    ++++H D+KP+++L+D     K ADFGLA+ +    R +TH   T   R 
Sbjct: 113 GILFCH---SRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVYTHEVVTLWYR- 168

Query: 147 PGCEAPELWMP---YSVTQKCDVFSFGMLLFEVVGRR 180
               APE+ +    YS     D++S G +  E+  ++
Sbjct: 169 ----APEVLLGSPRYST--PVDIWSIGTIFAEMATKK 199

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 45.4 bits (107), Expect = 5e-06
 Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 14/155 (9%)

Query: 30  IRFTSPQRMIAADNFSNLVG-----SEDTETYI-KGFLAMGPF--YLLCKKNILGFGQLR 81
           I+F S  R++   +  N+V      ++    YI    +  G F  +L  KK+ L   QL 
Sbjct: 37  IKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLV 96

Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST 141
           +  +  + G+AYL     +  +H D+   + L+ EN   K +DFG+++    +    +S+
Sbjct: 97  KFALDAAAGMAYLES---KNCIHRDLAARNCLVGENNVLKISDFGMSR--QEDDGIYSSS 151

Query: 142 GRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFE 175
           G ++ P    APE       + + DV+S+G+LL+E
Sbjct: 152 GLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWE 186

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 45.7 bits (108), Expect = 5e-06
 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 6/78 (7%)

Query: 102 IVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTPGCEAPELWMPYS 159
           +++ D+KPE++LLD        DFGL KL N +    T+T  G   TP   APEL + + 
Sbjct: 114 VIYRDLKPENILLDYQGHIALCDFGLCKL-NMKDDDKTNTFCG---TPEYLAPELLLGHG 169

Query: 160 VTQKCDVFSFGMLLFEVV 177
            T+  D ++ G+LL+E++
Sbjct: 170 YTKAVDWWTLGVLLYEML 187

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 18/96 (18%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY--NREHTHITSTGRRRT 146
           KG+ YL     ++ VH D+   ++L++     K  DFGL K+   ++E+  +      R 
Sbjct: 119 KGMEYLGS---KRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKV------RE 169

Query: 147 PGCEAPELW-MPYSVTQ-----KCDVFSFGMLLFEV 176
           PG E+P  W  P S+T+       DV+SFG++L+E+
Sbjct: 170 PG-ESPIFWYAPESLTESKFSVASDVWSFGVVLYEL 204

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 45.3 bits (107), Expect = 6e-06
 Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 23/148 (15%)

Query: 43  NFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSK----------GIA 92
              N++G  D  T          FYL+         ++    +S  K          G+ 
Sbjct: 72  QHENVIGLLDVFTSAVSGDEFQDFYLVMPYMQTDLQKIMGHPLSEDKVQYLVYQMLCGLK 131

Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           Y+H      I+H D+KP ++ ++E+   K  DFGLA+     H     TG   T    AP
Sbjct: 132 YIH---SAGIIHRDLKPGNLAVNEDCELKILDFGLAR-----HADAEMTGYVVTRWYRAP 183

Query: 153 EL---WMPYSVTQKCDVFSFGMLLFEVV 177
           E+   WM Y   Q  D++S G ++ E++
Sbjct: 184 EVILNWMHY--NQTVDIWSVGCIMAEML 209

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 12/96 (12%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITS---TGRRR 145
           +G+ Y+H      ++H D+KP ++LL+ N   K  DFGLA+  + +   +T    T   R
Sbjct: 119 RGLKYIHS---ANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRWYR 175

Query: 146 TPGCEAPELWMPYS-VTQKCDVFSFGMLLFEVVGRR 180
                APEL +  S  T   DV+S G +  E++GR+
Sbjct: 176 -----APELLLNCSEYTTAIDVWSVGCIFAELLGRK 206

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 45.0 bits (106), Expect = 7e-06
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           ++G+ +L     +K +H D+   ++LL EN   K  DFGLA+   ++  ++     R   
Sbjct: 184 ARGMEFL---ASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPL 240

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
              APE       T + DV+SFG+LL+E+
Sbjct: 241 KWMAPESIFDKVYTTQSDVWSFGVLLWEI 269

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 45.0 bits (106), Expect = 8e-06
 Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 13/92 (14%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           +G+ Y+H      I+H D+KP +V ++E+   +  DFGLA+  + E T   +T   R   
Sbjct: 129 RGLKYIHS---AGIIHRDLKPSNVAVNEDCELRILDFGLARQADDEMTGYVATRWYR--- 182

Query: 149 CEAPEL---WMPYSVTQKCDVFSFGMLLFEVV 177
             APE+   WM Y+  Q  D++S G ++ E++
Sbjct: 183 --APEIMLNWMHYN--QTVDIWSVGCIMAELL 210

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 45.0 bits (106), Expect = 8e-06
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 17/109 (15%)

Query: 80  LREIEVSTS-----KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L+E+E++       +G+AYLH      ++H DIK  ++LL E    K ADFG A   +  
Sbjct: 118 LQEVEIAAITHGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASKSSPA 174

Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQ---KCDVFSFGMLLFEVVGRR 180
           ++ +       TP   APE+ +     Q   K DV+S G+   E+  R+
Sbjct: 175 NSFVG------TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERK 217

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 13/95 (13%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+  + E T   +T   R   
Sbjct: 129 RGLKYIHS---AGIIHRDLKPSNIAVNEDCELKILDFGLARHTDDEMTGYVATRWYR--- 182

Query: 149 CEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
             APE+   WM Y   Q  D++S G ++ E++  +
Sbjct: 183 --APEIMLNWMHY--NQTVDIWSVGCIMAELLTGK 213

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 44.8 bits (106), Expect = 9e-06
 Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 17/94 (18%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           G+AYL E   +K VH D+   + L+ EN   K ADFGL++       +I S    +    
Sbjct: 142 GMAYLSE---RKFVHRDLATRNCLVGENMVVKIADFGLSR-------NIYSADYYKASEN 191

Query: 150 EA-PELWMP-----YS-VTQKCDVFSFGMLLFEV 176
           +A P  WMP     Y+  T + DV+++G++L+E+
Sbjct: 192 DAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEI 225

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 45.0 bits (106), Expect = 9e-06
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 13/104 (12%)

Query: 102 IVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVT 161
           IV+ D+KPE++LLD++ F K  DFG AK+ +     +       TP   APE+ +     
Sbjct: 152 IVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTRTYTLCG-----TPEYIAPEILLNVGHG 206

Query: 162 QKCDVFSFGMLLFEVV--------GRRRNLEKEISEGQEWFPKW 197
           +  D ++ G+ ++E++             + ++I EG  +FPK+
Sbjct: 207 KAADWWTLGIFIYEILVGCPPFYANEPLLIYQKILEGIIYFPKF 250

Length = 340

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 6/98 (6%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           Q++ + +   +G+ YLHE     I+H D+K  ++LL +    K ADFGLA+ Y      +
Sbjct: 109 QVKCLMLQLLRGLQYLHENF---IIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPM 165

Query: 139 TSTGRRRTPGCEAPELWMPYSV-TQKCDVFSFGMLLFE 175
           T   +  T    APEL +  +  T   D+++ G +L E
Sbjct: 166 TP--KVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAE 201

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           + G+AYL     +  VH D+   +VLL      K +DFG+++       +  +T   R P
Sbjct: 105 AMGMAYLES---KHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWP 161

Query: 148 -GCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
               APE       + K DV+S+G+ L+E  
Sbjct: 162 LKWYAPECINYGKFSSKSDVWSYGVTLWEAF 192

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 103 VHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQ 162
           VH DIKPE+VL+D     K ADFG A         + S     TP   APE+    +   
Sbjct: 124 VHRDIKPENVLIDRTGHIKLADFGSAARLTAN-KMVNSKLPVGTPDYIAPEVLTTMNGDG 182

Query: 163 K------CDVFSFGMLLFEVV 177
           K      CD +S G++ +E++
Sbjct: 183 KGTYGVECDWWSLGVIAYEMI 203

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 11/131 (8%)

Query: 51  EDTETYI-KGFLAMGPFYLLCKKN---ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYD 106
           ED   YI  GF   G  Y   K+    +L   Q+ E  V  +  + YLHE+    I+H D
Sbjct: 71  EDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEK---HILHRD 127

Query: 107 IKPESVLLDENFFPKAADFGLAK-LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCD 165
           +K ++V L      K  D G+A+ L N+     T  G   TP   +PEL+       K D
Sbjct: 128 LKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIG---TPYYMSPELFSNKPYNYKSD 184

Query: 166 VFSFGMLLFEV 176
           V++ G  ++E+
Sbjct: 185 VWALGCCVYEM 195

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 16/105 (15%)

Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY--NREH 135
           G LR I    + G+ YL +      VH D+   ++L++ N   K +DFGL+++   + E 
Sbjct: 111 GMLRGI----AAGMKYLSD---MNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEG 163

Query: 136 THITSTGR---RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+ TS G+   R T    APE       T   DV+SFG++++EV+
Sbjct: 164 TYTTSGGKIPIRWT----APEAIAYRKFTSASDVWSFGIVMWEVM 204

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 27/88 (30%), Positives = 47/88 (53%)

Query: 94  LHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE 153
           L E   +K++H D+K  ++ L      K  DFG +K Y+   +   ++    TP   APE
Sbjct: 182 LDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPE 241

Query: 154 LWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           LW     ++K D++S G++L+E++   R
Sbjct: 242 LWERKRYSKKADMWSLGVILYELLTLHR 269

Length = 478

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 17/114 (14%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           K I + H   +  IVH DIKPE++L+  N   K  DFG A+  + E ++   T    T  
Sbjct: 111 KAIHWCH---KNDIVHRDIKPENLLISHNDVLKLCDFGFARNLS-EGSNANYTEYVATRW 166

Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGREEV 202
             +PEL +     +  D++S G +L            E+S+GQ  FP  G  E+
Sbjct: 167 YRSPELLLGAPYGKAVDMWSVGCIL-----------GELSDGQPLFP--GESEI 207

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 85  VSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRR 144
           V  +KG+ YL E   +++VH D+   +VL+      K  DFGLAKL   +     + G +
Sbjct: 116 VQIAKGMNYLEE---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGK 172

Query: 145 RTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
                 A E  +    T + DV+S+G+ ++E++
Sbjct: 173 VPIKWMALESILHRIYTHQSDVWSYGVTVWELM 205

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNRE-HTHITSTGRRRT 146
           K + ++H   R  I H DIKPE++L+ ++   K ADFG  + +Y++  +T   ST   R 
Sbjct: 111 KSLDHMH---RNGIFHRDIKPENILIKDDIL-KLADFGSCRGIYSKPPYTEYISTRWYRA 166

Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           P C    L   Y    K D+++ G + FE++
Sbjct: 167 PEC---LLTDGY-YGPKMDIWAVGCVFFEIL 193

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 12/97 (12%)

Query: 83  IEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNR-EHTHI-T 139
           I V+  +G+ YL+   R  I+H DIKP ++L++     K  DFG++ +L N    T + T
Sbjct: 108 IAVAVVEGLTYLYNVHR--IMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADTFVGT 165

Query: 140 STGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           ST         +PE       T K DV+S G+ + E+
Sbjct: 166 ST-------YMSPERIQGGKYTVKSDVWSLGISIIEL 195

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTPG 148
           + YLH      I++ D+KPE++LLD        DFGL K    EH+  TST  G   TP 
Sbjct: 109 LGYLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCK-EGIEHSKTTSTFCG---TPE 161

Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             APE+       +  D +  G +L+E++
Sbjct: 162 YLAPEVLRKQPYDRTVDWWCLGAVLYEML 190

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 17/105 (16%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           Q+  + +S  + ++YLH    Q ++H DIK +S+LL  +   K +DFG     ++E    
Sbjct: 119 QIATVCLSVLRALSYLHN---QGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKE---- 171

Query: 139 TSTGRRR----TPGCEAPELW--MPYSVTQKCDVFSFGMLLFEVV 177
               +R+    TP   APE+   +PY    + D++S G+++ E++
Sbjct: 172 --VPKRKSLVGTPYWMAPEVISRLPYGT--EVDIWSLGIMVIEMI 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 71  KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK 129
           + NIL     R I     K + Y+H      ++H D+KP ++LL+ +   K ADFGLA+
Sbjct: 100 RANILEDVHKRYIMYQLLKALKYIHS---GNVIHRDLKPSNILLNSDCRVKLADFGLAR 155

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 17/109 (15%)

Query: 80  LREIEVSTS-----KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L+E+E++       +G+AYLH      ++H DIK  ++LL E    K ADFG A + +  
Sbjct: 122 LQEVEIAAITHGALQGLAYLHS---HNMIHRDIKAGNILLTEPGQVKLADFGSASIASPA 178

Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQ---KCDVFSFGMLLFEVVGRR 180
           ++ +       TP   APE+ +     Q   K DV+S G+   E+  R+
Sbjct: 179 NSFVG------TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERK 221

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 12/110 (10%)

Query: 73  NILGFGQLREIEVSTS-----KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL 127
           ++L  G L E  ++T      KG+ YLH E   + +H DIK  +VLL E    K ADFG+
Sbjct: 91  DLLKPGPLEETYIATILREILKGLDYLHSE---RKIHRDIKAANVLLSEQGDVKLADFGV 147

Query: 128 A-KLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           A +L + +    T  G   TP   APE+    +   K D++S G+   E+
Sbjct: 148 AGQLTDTQIKRNTFVG---TPFWMAPEVIKQSAYDFKADIWSLGITAIEL 194

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           ++G+ +L     +K +H D+   ++LL EN   K  DFGLA+   ++  ++     R   
Sbjct: 183 ARGMEFL---ASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPL 239

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
              APE       T + DV+SFG+LL+E+
Sbjct: 240 KWMAPESIFDKVYTTQSDVWSFGVLLWEI 268

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 23/109 (21%)

Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE--- 134
             +R I     +G+A++H   +    H D+KPE++L+      K ADFGLA    RE   
Sbjct: 99  SVIRSIIYQILQGLAHIH---KHGFFHRDLKPENLLVSGPEVVKIADFGLA----REIRS 151

Query: 135 ---HTHITSTGRRRTPGCEAPELWM---PYSVTQKCDVFSFGMLLFEVV 177
              +T   ST   R     APE+ +    YS     D+++ G ++ E+ 
Sbjct: 152 RPPYTDYVSTRWYR-----APEILLRSTSYS--SPVDIWALGCIMAELY 193

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 17/99 (17%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDE-NFFPKAADFGLAKLYN---REHTHITSTGRR 144
           +GIAY H     +++H D+KP+++L+D      K ADFGLA+ +    R  TH   T   
Sbjct: 113 RGIAYCHS---HRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWY 169

Query: 145 RTPGCEAPELWM---PYSVTQKCDVFSFGMLLFEVVGRR 180
           R     APE+ +    YS     D++S G +  E+V ++
Sbjct: 170 R-----APEILLGSRHYST--PVDIWSVGCIFAEMVNQK 201

Length = 294

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 8/102 (7%)

Query: 85  VSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN-FFPKAADFGLAK-LYNREHTHITSTG 142
           V  S G+ ++H+   +KI+H DIK +++ L +N    K  DFG+A+ L +      T  G
Sbjct: 108 VQISLGLKHIHD---RKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVG 164

Query: 143 RRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLE 184
              TP   +PE+        K D++S G +L+E+   +   E
Sbjct: 165 ---TPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFE 203

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 85  VSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRR 144
           V  + G+ YL     ++ +H D+   ++LL  +   K  DFGL +   +   H       
Sbjct: 104 VQIANGMRYLES---KRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHL 160

Query: 145 RTP--GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           + P   C APE     + +   DV+ FG+ L+E+
Sbjct: 161 KVPFAWC-APESLRTRTFSHASDVWMFGVTLWEM 193

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 6/115 (5%)

Query: 64  GPF--YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPK 121
           GP   +L  KK+ +    + E+    S G+ YL     +  VH D+   +VLL    + K
Sbjct: 79  GPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEG---KNFVHRDLAARNVLLVNQHYAK 135

Query: 122 AADFGLAKLYNREHTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFE 175
            +DFGL+K    + ++  +    + P    APE       + + DV+S+G+ ++E
Sbjct: 136 ISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWE 190

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 20/93 (21%)

Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHTHITSTGRRRTPGC 149
           + YLH    ++IV+ D+KPE++LLD+    K  DFG AK L +R  T            C
Sbjct: 114 LEYLHS---KEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTWTL-----------C 159

Query: 150 EAPELWMPYSVTQK-----CDVFSFGMLLFEVV 177
             PE   P  +  K      D ++ G+L++E++
Sbjct: 160 GTPEYLAPEVIQSKGHNKAVDWWALGILIYEML 192

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 14/136 (10%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL  ++  L    L  +     +G+ YL    R   +H D+   + L+      K +DFG
Sbjct: 89  YLRQRQGKLSKDMLLSMCQDVCEGMEYLE---RNSFIHRDLAARNCLVSSTGVVKVSDFG 145

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE 186
           + + Y  +  + +S+G +       PE++     + K DV+SFG+L++EV          
Sbjct: 146 MTR-YVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEV---------- 194

Query: 187 ISEGQEWFPKWGREEV 202
            +EG+  F K    EV
Sbjct: 195 FTEGKMPFEKKSNYEV 210

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 26/119 (21%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI----TSTGRRR 145
           G+  LH   R++IV+ D+KPE++LLD+    + +D GLA         I    T  GR  
Sbjct: 114 GLEDLH---RERIVYRDLKPENILLDDYGHIRISDLGLA-------VEIPEGETIRGRVG 163

Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG------------RRRNLEKEISEGQE 192
           T G  APE+      T   D +  G L++E++             +R  +E+ + E QE
Sbjct: 164 TVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKEDQE 222

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 13/92 (14%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRR--RTP 147
           G+ +LH    + I++ D+K ++V+LD     K ADFG+ K    E+     T R    TP
Sbjct: 113 GLFFLH---SKGIIYRDLKLDNVMLDAEGHIKIADFGMCK----ENIFGGKTTRTFCGTP 165

Query: 148 GCEAPE--LWMPYSVTQKCDVFSFGMLLFEVV 177
              APE   + PY   +  D ++FG+LL+E++
Sbjct: 166 DYIAPEIIAYQPYG--KSVDWWAFGVLLYEML 195

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 16/106 (15%)

Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH 137
           G LR I    + G+ YL E      VH D+   ++L++ N   K +DFGL++    + + 
Sbjct: 110 GMLRGI----AAGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSD 162

Query: 138 ITSTGRRRTPGCEAPELWM-PYSV-----TQKCDVFSFGMLLFEVV 177
            T T    + G + P  W  P ++     T   DV+S+G++++EV+
Sbjct: 163 PTYTS---SLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVM 205

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 8/89 (8%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           G+ ++H    + +V+ D+KP ++LLDE+   + +D GLA  ++++  H  S G   T G 
Sbjct: 109 GLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPH-ASVG---THGY 161

Query: 150 EAPE-LWMPYSVTQKCDVFSFGMLLFEVV 177
            APE L    +     D FS G +LF+++
Sbjct: 162 MAPEVLQKGVAYDSSADWFSLGCMLFKLL 190

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 39/146 (26%)

Query: 68  LLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL 127
           LL KK+     + R     T   I  +H   +   +H DIKP+++LLD     K +DFGL
Sbjct: 91  LLMKKDTFTEEETRFYIAETILAIDSIH---KLGYIHRDIKPDNLLLDAKGHIKLSDFGL 147

Query: 128 AKLYNREH---------------------THITSTGR-------RR--------TPGCEA 151
                + H                       ++S  +       RR        TP   A
Sbjct: 148 CTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIA 207

Query: 152 PELWMPYSVTQKCDVFSFGMLLFEVV 177
           PE+++     ++CD +S G++++E++
Sbjct: 208 PEVFLQTGYNKECDWWSLGVIMYEML 233

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 17/109 (15%)

Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   QL +I V  + G+ YL     Q  VH D+   + L+  +   K  DFG+++     
Sbjct: 119 LTLSQLLQIAVQIASGMVYL---ASQHFVHRDLATRNCLVGYDLVVKIGDFGMSR----- 170

Query: 135 HTHITSTGRRRTPGCEA-PELWM-PYSV-----TQKCDVFSFGMLLFEV 176
              + +T   R  G    P  WM P S+     T + DV+SFG++L+E+
Sbjct: 171 --DVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEI 217

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 42.7 bits (100), Expect = 4e-05
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 85  VSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRR 144
           V  +KG++YL EE R  +VH D+   +VL+      K  DFGLA+L + + T   + G +
Sbjct: 116 VQIAKGMSYL-EEVR--LVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGK 172

Query: 145 RTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
                 A E  +    T + DV+S+G+ ++E++
Sbjct: 173 VPIKWMALESILHRRFTHQSDVWSYGVTVWELM 205

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 12/94 (12%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDEN-FFPKAADFGLAKLYNREHTHITSTGRRR-- 145
           +G++YLHE    +I+H D+K  ++L+D      + ADFG A    R     T  G  +  
Sbjct: 114 RGLSYLHE---NQIIHRDVKGANLLIDSTGQRLRIADFGAAA---RLAAKGTGAGEFQGQ 167

Query: 146 ---TPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
              T    APE+       + CDV+S G ++ E+
Sbjct: 168 LLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEM 201

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 57  IKGFLAMGPF--YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL 114
           I  FL  G    YL   KN +   Q  +  V   KG+ YL     ++ VH D+   +VL+
Sbjct: 86  IMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLV 142

Query: 115 DENFFPKAADFGLAKLYNREHTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLL 173
           +     K  DFGL K    +  + T      +P    APE  +        DV+SFG+ L
Sbjct: 143 ESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTL 202

Query: 174 FEVV 177
           +E++
Sbjct: 203 YELL 206

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 9/114 (7%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           FY L ++      + R      +  + YLH      IV+ D+KPE++LLD        DF
Sbjct: 84  FYHLQRERCFLEPRARFYAAEIASALGYLHS---LNIVYRDLKPENILLDSQGHIVLTDF 140

Query: 126 GLAKLYNREHTHITST--GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           GL K  N EH   TST  G   TP   APE+       +  D +  G +L+E++
Sbjct: 141 GLCK-ENIEHNGTTSTFCG---TPEYLAPEVLHKQPYDRTVDWWCLGAVLYEML 190

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 25/113 (22%)

Query: 78  GQLREIEVS-----TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN 132
           G L E++++     T +G+AYLH + +   +H DIK  ++LL +N   K ADFG+A    
Sbjct: 101 GPLSELQIAYVCRETLQGLAYLHSKGK---MHRDIKGANILLTDNGDVKLADFGVA---- 153

Query: 133 REHTHITSTGRRRTPGCEAPELWMPYSV---------TQKCDVFSFGMLLFEV 176
                IT+T  +R      P  WM   V          Q CD+++ G+   E+
Sbjct: 154 ---AKITATIAKRKSFIGTP-YWMAPEVAAVEKNGGYNQLCDIWAVGITAIEL 202

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 17/109 (15%)

Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L  GQ+  I    + G+ YL        VH D+   + L+ +    K  DFG+++     
Sbjct: 119 LTLGQMLAIASQIASGMVYL---ASLHFVHRDLATRNCLVGQGLVVKIGDFGMSR----- 170

Query: 135 HTHITSTGRRRTPG-CEAPELWMP------YSVTQKCDVFSFGMLLFEV 176
              I ST   R  G    P  WMP         T + D++SFG++L+E+
Sbjct: 171 --DIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEI 217

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 45/131 (34%)

Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL---------AKLYN--------- 132
           I  +H   +   +H DIKP+++L+D +   K  DFGL         +K Y          
Sbjct: 114 IESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDS 170

Query: 133 -----------------------REHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSF 169
                                  R+H    +     TP   APE+ +    TQ CD +S 
Sbjct: 171 MEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSV 230

Query: 170 GMLLFE-VVGR 179
           G++L+E +VG+
Sbjct: 231 GVILYEMLVGQ 241

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 4/77 (5%)

Query: 102 IVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHTHITSTGRRRTPGCEAPELWMPYSV 160
           I++ D+KPE++LLDE    K  DFGL+K   + E    +  G   T    APE+      
Sbjct: 119 IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCG---TVEYMAPEVVNRRGH 175

Query: 161 TQKCDVFSFGMLLFEVV 177
           TQ  D +SFG+L+FE++
Sbjct: 176 TQSADWWSFGVLMFEML 192

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 3/43 (6%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           KG+A+ H      ++H D+KP+++L+++N   K ADFGLA+ +
Sbjct: 110 KGLAFCHS---HNVLHRDLKPQNLLINKNGELKLADFGLARAF 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 17/116 (14%)

Query: 68  LLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL 127
           L C    L F  L  +    + G+ YL        VH D+   + L+ +N+  K ADFG+
Sbjct: 120 LACNSKSLSFSTLLYMATQIASGMRYLES---LNFVHRDLATRNCLVGKNYTIKIADFGM 176

Query: 128 AK-LYNREHTHITSTGRRRTPGCEAPELWMPY-SV-----TQKCDVFSFGMLLFEV 176
           ++ LY+ ++  +    + R P    P  WM + SV     T K DV++FG+ L+E+
Sbjct: 177 SRNLYSSDYYRV----QGRAP---LPIRWMAWESVLLGKFTTKSDVWAFGVTLWEI 225

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 42.3 bits (99), Expect = 6e-05
 Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 8/112 (7%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           Y L +  +    ++R        G+ ++H    + +V+ D+KP ++LLDE+   + +D G
Sbjct: 86  YHLSQHGVFSEKEMRFYATEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLG 142

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPE-LWMPYSVTQKCDVFSFGMLLFEVV 177
           LA  ++++  H  S G   T G  APE L    +     D FS G +LF+++
Sbjct: 143 LACDFSKKKPH-ASVG---THGYMAPEVLQKGTAYDSSADWFSLGCMLFKLL 190

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 5/94 (5%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-ITSTGRRRTP 147
           +G+ Y+H      ++H D+KP ++LL+ N   K  DFGLA++ + EH H    T    T 
Sbjct: 117 RGLKYIHS---ANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATR 173

Query: 148 GCEAPELWMPYS-VTQKCDVFSFGMLLFEVVGRR 180
              APE+ +     T+  D++S G +L E++  R
Sbjct: 174 WYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNR 207

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 18/41 (43%), Positives = 30/41 (73%), Gaps = 3/41 (7%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK 129
           +G+ Y H   R+K++H D+KP+++L++E    K ADFGLA+
Sbjct: 115 RGLNYCH---RRKVLHRDLKPQNLLINERGELKLADFGLAR 152

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 73  NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK 129
           N L   ++R+      +GI + H      I+H DIKPE++L+ ++   K  DFG A+
Sbjct: 95  NGLDESRVRKYLFQILRGIEFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFAR 148

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 17/41 (41%), Positives = 30/41 (73%), Gaps = 3/41 (7%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK 129
           +G+AY H   +++++H D+KP+++L+ E    K ADFGLA+
Sbjct: 114 RGLAYCH---QRRVLHRDLKPQNLLISERGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 16/123 (13%)

Query: 60  FLAM-----GPF-YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           +LAM     G F  LL    +L     R       + +  LH       +H D+KPE+ L
Sbjct: 77  YLAMEYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALH---ELGYIHRDLKPENFL 133

Query: 114 LDENFFPKAADFGLAK-LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGML 172
           +D +   K  DFGL+K +    ++ + S      P   APE+          D +S G +
Sbjct: 134 IDASGHIKLTDFGLSKGIVTYANSVVGS------PDYMAPEVLRGKGYDFTVDYWSLGCM 187

Query: 173 LFE 175
           L+E
Sbjct: 188 LYE 190

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 42.0 bits (98), Expect = 9e-05
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 85  VSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRR 144
           V  +KG+ YL E   +++VH D+   +VL+      K  DFGLA+L   +     + G +
Sbjct: 116 VQIAKGMMYLEE---RRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGK 172

Query: 145 RTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
                 A E       T + DV+S+G+ ++E++
Sbjct: 173 MPIKWMALECIHYRKFTHQSDVWSYGVTIWELM 205

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 42.0 bits (98), Expect = 9e-05
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 17/105 (16%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           Q+  I    + G+ YL     Q  VH D+   + L+ EN   K  DFG+++        +
Sbjct: 121 QMLHIAQQIAAGMVYL---ASQHFVHRDLATRNCLVGENLLVKIGDFGMSR-------DV 170

Query: 139 TSTGRRRTPG-CEAPELWMP------YSVTQKCDVFSFGMLLFEV 176
            ST   R  G    P  WMP         T + DV+S G++L+E+
Sbjct: 171 YSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEI 215

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 41.9 bits (98), Expect = 9e-05
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 73  NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK 129
           NI+    ++       +G+AY H   R+K++H D+KP+++L++E    K ADFGLA+
Sbjct: 99  NIMSMHNVKIFLYQILRGLAYCH---RRKVLHRDLKPQNLLINERGELKLADFGLAR 152

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 43/144 (29%), Positives = 59/144 (40%), Gaps = 39/144 (27%)

Query: 52  DTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPES 111
           D  TY+      GP         L   Q   I+    + +AYLH    + I+H D+K E+
Sbjct: 171 DLFTYVDR---SGP---------LPLEQAITIQRRLLEALAYLHG---RGIIHRDVKTEN 215

Query: 112 VLLDENFFPKAADFGLA-KLYNREHTHITSTGRRRTPGC---------EAPELWM--PYS 159
           + LDE       DFG A KL    H          TP C          +PEL    PY 
Sbjct: 216 IFLDEPENAVLGDFGAACKL--DAHPD--------TPQCYGWSGTLETNSPELLALDPYC 265

Query: 160 VTQKCDVFSFGMLLFEVVGRRRNL 183
              K D++S G++LFE+  +   L
Sbjct: 266 A--KTDIWSAGLVLFEMSVKNVTL 287

Length = 392

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 6/94 (6%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITS--TGRRRTP 147
           G+ Y+H      ++H D+KP ++L++ +   K  DFGLA+ ++          T    T 
Sbjct: 117 GLKYIHS---ANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATR 173

Query: 148 GCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRR 180
              APE+ + + S T+  DV+S G +L E++GR+
Sbjct: 174 WYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRK 207

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 12/93 (12%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL-AKLYNREHTHITSTGRRRTPG 148
           G+ +LH     K +H D+K  ++LL      K  DFG+ A+L +      TS G   TP 
Sbjct: 136 GLQHLHV---NKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVG---TPF 189

Query: 149 CEAPEL-----WMPYSVTQKCDVFSFGMLLFEV 176
             APE+      +  +   +CDV+S G+   E+
Sbjct: 190 WMAPEVIACEQQLDSTYDARCDVWSLGITAIEL 222

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 17/109 (15%)

Query: 80  LREIEVSTS-----KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L+E+E++       +G+AYLH      ++H D+K  ++LL E    K  DFG A +    
Sbjct: 112 LQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA 168

Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQ---KCDVFSFGMLLFEVVGRR 180
           +  +       TP   APE+ +     Q   K DV+S G+   E+  R+
Sbjct: 169 NXFVG------TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERK 211

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 22/123 (17%)

Query: 89  KGIAYLHEEC-------RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST 141
           + I Y  E C       R++IV+ D+KPE++LLD+    + +D GLA          T  
Sbjct: 103 RAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGE---TVR 159

Query: 142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG------------RRRNLEKEISE 189
           GR  T G  APE+      T   D +  G L++E++             +R  +++ + E
Sbjct: 160 GRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKE 219

Query: 190 GQE 192
            QE
Sbjct: 220 DQE 222

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 6/89 (6%)

Query: 94  LHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE 153
           +H   +   VH DIKP++VLLD N   + ADFG     N++ T + S+    TP   +PE
Sbjct: 115 IHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGT-VQSSVAVGTPDYISPE 173

Query: 154 LWMPYS-----VTQKCDVFSFGMLLFEVV 177
           +             +CD +S G+ ++E++
Sbjct: 174 ILQAMEDGMGKYGPECDWWSLGVCMYEML 202

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 18/103 (17%)

Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT 139
           +RE+ V+    + Y+H   +  ++H DIK  ++L+      K  DFG+A L N       
Sbjct: 107 IREVLVA----LKYIH---KVGVIHRDIKAANILVTNTGNVKLCDFGVAALLN------Q 153

Query: 140 STGRRRT----PGCEAPELWMP-YSVTQKCDVFSFGMLLFEVV 177
           ++ +R T    P   APE+         K D++S G+ ++E+ 
Sbjct: 154 NSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMA 196

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 24/110 (21%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           Q+R +   T + + YLHE    KI+H D+K  ++L   +   K ADFG++    R     
Sbjct: 104 QIRVVCKQTLEALNYLHE---NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTR----- 155

Query: 139 TSTGRRR-----TPGCEAPELWM-------PYSVTQKCDVFSFGMLLFEV 176
             T +RR     TP   APE+ M       PY    K DV+S G+ L E+
Sbjct: 156 --TIQRRDSFIGTPYWMAPEVVMCETSKDRPYDY--KADVWSLGITLIEM 201

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           G+ Y+H   R KI+H D+K  ++L+ ++   K ADFGLA+ +
Sbjct: 131 GLYYIH---RNKILHRDMKAANILITKDGILKLADFGLARAF 169

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 23/112 (20%)

Query: 78  GQLREIEVS-----TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN 132
           G L E +++     T +G+ YLH + +   +H DIK  ++LL +N   K ADFG++    
Sbjct: 101 GPLSESQIAYVSRETLQGLYYLHSKGK---MHRDIKGANILLTDNGHVKLADFGVS---- 153

Query: 133 REHTHITSTGRRR-----TPGCEAPELWM---PYSVTQKCDVFSFGMLLFEV 176
                IT+T  +R     TP   APE+          Q CD+++ G+   E+
Sbjct: 154 ---AQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIEL 202

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 13/70 (18%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR--- 145
           +G+A+LH     K++H DIK ++VLL EN   K  DFG++   +R      + GRR    
Sbjct: 132 RGLAHLHA---HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDR------TVGRRNTFI 182

Query: 146 -TPGCEAPEL 154
            TP   APE+
Sbjct: 183 GTPYWMAPEV 192

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 18/114 (15%)

Query: 73  NILGFGQLREIEVSTS-----KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL 127
           +I+   +L E +++T      + + YLH    Q ++H DIK +S+LL  +   K +DFG 
Sbjct: 107 DIVSQTRLNEEQIATVCESVLQALCYLHS---QGVIHRDIKSDSILLTLDGRVKLSDFGF 163

Query: 128 AKLYNREHTHITSTGRRR----TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
               +++        +R+    TP   APE+        + D++S G+++ E+V
Sbjct: 164 CAQISKD------VPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMV 211

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 18/41 (43%), Positives = 31/41 (75%), Gaps = 3/41 (7%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK 129
           +G++Y H   ++KI+H D+KP+++L++E    K ADFGLA+
Sbjct: 114 RGLSYCH---KRKILHRDLKPQNLLINEKGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 13/70 (18%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR--- 145
           +G+++LH+    K++H DIK ++VLL EN   K  DFG++   +R      + GRR    
Sbjct: 122 RGLSHLHQ---HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDR------TVGRRNTFI 172

Query: 146 -TPGCEAPEL 154
            TP   APE+
Sbjct: 173 GTPYWMAPEV 182

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 17/123 (13%)

Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHT 136
           G LR I    + G+ YL +      VH D+   ++L++ N   K +DFGL++ L +    
Sbjct: 110 GMLRGI----ASGMKYLSD---MGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEA 162

Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV--GRR-------RNLEKEI 187
             T+ G +      APE       T   DV+S+G++++EV+  G R       +++ K I
Sbjct: 163 AYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQDVIKAI 222

Query: 188 SEG 190
            EG
Sbjct: 223 EEG 225

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 13/95 (13%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRR--R 145
           S G+ +LH   R+ I++ D+K ++V+LD     K ADFG+ K    EH     T R    
Sbjct: 111 SVGLFFLH---RRGIIYRDLKLDNVMLDSEGHIKIADFGMCK----EHMVDGVTTRTFCG 163

Query: 146 TPGCEAPEL--WMPYSVTQKCDVFSFGMLLFEVVG 178
           TP   APE+  + PY   +  D +++G+LL+E++ 
Sbjct: 164 TPDYIAPEIIAYQPYG--KSVDWWAYGVLLYEMLA 196

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 9/134 (6%)

Query: 45  SNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVH 104
           S LVG  D    +  +LA G    +  +  +  GQ+  +     + + +LH     +++H
Sbjct: 84  SYLVG--DELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHS---NQVIH 138

Query: 105 YDIKPESVLLDENFFPKAADFGL-AKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQK 163
            DIK +++LL  +   K  DFG  A++   +    T  G   TP   APE+    +   K
Sbjct: 139 RDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVG---TPYWMAPEVVTRKAYGPK 195

Query: 164 CDVFSFGMLLFEVV 177
            D++S G++  E+V
Sbjct: 196 VDIWSLGIMAIEMV 209

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           G+ Y H   ++  +H DIK  ++LL+     K ADFGLA+LYN E +    T +  T   
Sbjct: 128 GLNYCH---KKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESR-PYTNKVITLWY 183

Query: 150 EAPELWM-PYSVTQKCDVFSFGMLLFEVVGRR 180
             PEL +         DV+S G +L E+  ++
Sbjct: 184 RPPELLLGEERYGPAIDVWSCGCILGELFTKK 215

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 85  VSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITS-TGR 143
           V     + ++H    ++I+H DIKP +V +      K  D GL + ++ + T   S  G 
Sbjct: 113 VQLCSALEHMHS---KRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVG- 168

Query: 144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFE 175
             TP   +PE         K D++S G LL+E
Sbjct: 169 --TPYYMSPERIHENGYNFKSDIWSLGCLLYE 198

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 9/90 (10%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK--LYNREHTHITSTGRRRTP 147
           G+ +LH    + I++ D+K ++V+LD +   K ADFG+ K  ++  ++   T  G   TP
Sbjct: 108 GLQFLHS---KGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFG-DNRASTFCG---TP 160

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
              APE+      T   D +SFG+LL+E++
Sbjct: 161 DYIAPEILQGLKYTFSVDWWSFGVLLYEML 190

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 17/99 (17%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHITSTGRRRT 146
           + G+ YL     +  +H D+   + +L+EN     ADFGL+ K+YN ++        R+ 
Sbjct: 122 ASGMEYLSS---KSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYY-------RQG 171

Query: 147 PGCEAPELWMPYS------VTQKCDVFSFGMLLFEVVGR 179
              + P  W+          T K DV+SFG+ ++E+  R
Sbjct: 172 RIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATR 210

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 20/97 (20%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR---- 145
           G+ +LH     +I+H D+K  ++LL      K  DFG++         +TST  RR    
Sbjct: 140 GLQHLHN---NRIIHRDVKGNNILLTTEGGVKLVDFGVS-------AQLTSTRLRRNTSV 189

Query: 146 -TPGCEAPEL-----WMPYSVTQKCDVFSFGMLLFEV 176
            TP   APE+        YS   +CDV+S G+   E+
Sbjct: 190 GTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIEL 226

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 20/125 (16%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHITSTGRRRTPG 148
           G+  LH E     V+ D+KPE++LLD+    + +D GLA K+   E       GR  T G
Sbjct: 114 GLEDLHRE---NTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESIR----GRVGTVG 166

Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVG------------RRRNLEKEISEGQEWFPK 196
             APE+      T   D +  G L++E++             +R  +++ + E +E +  
Sbjct: 167 YMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETEEVYSA 226

Query: 197 WGREE 201
              EE
Sbjct: 227 KFSEE 231

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 84  EVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL-YNREHTHITSTG 142
           EV+++  I YLH      I++ D+KPE++LLD        DFGL K     E T  T  G
Sbjct: 104 EVASA--IGYLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCG 158

Query: 143 RRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
              TP   APE+       +  D +  G +L+E++
Sbjct: 159 ---TPEYLAPEVLRKEPYDRTVDWWCLGAVLYEML 190

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 7/91 (7%)

Query: 88  SKGIAYL-HEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
           +KG+A+L  + C    +H D+   +VLL      K  DFGLA+    +  ++   G  R 
Sbjct: 151 AKGMAFLASKNC----IHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYV-VKGNARL 205

Query: 147 P-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           P    APE       T + DV+S+G+LL+E+
Sbjct: 206 PVKWMAPESIFNCVYTFESDVWSYGILLWEI 236

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 9/90 (10%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK--LYNREHTHITSTGRRRTP 147
           G+ +LH    + IV+ D+K +++LLD +   K ADFG+ K  +     T  T  G   TP
Sbjct: 108 GLQFLHS---KGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTC-TFCG---TP 160

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
              APE+ +        D +SFG+LL+E++
Sbjct: 161 DYIAPEILLGQKYNTSVDWWSFGVLLYEML 190

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL  K+NI     +  IE S  + I YLHE    +I+H DIK E++ ++        DFG
Sbjct: 172 YLAAKRNI-AICDILAIERSVLRAIQYLHE---NRIIHRDIKAENIFINHPGDVCLGDFG 227

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            A  +  +       G   T    APEL          D++S G++LFE+
Sbjct: 228 -AACFPVDINANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEM 276

Length = 391

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 18/41 (43%), Positives = 30/41 (73%), Gaps = 3/41 (7%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK 129
           KGIA+ HE    +++H D+KP+++L+++    K ADFGLA+
Sbjct: 111 KGIAFCHE---NRVLHRDLKPQNLLINKRGELKLADFGLAR 148

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 12/85 (14%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRRT 146
           G+A+LH+     I+H D+K  ++LL+     K  DFGLA+ Y    + +T +  T   R 
Sbjct: 118 GVAHLHD---NWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLKPYTQLVVTLWYR- 173

Query: 147 PGCEAPELWM-PYSVTQKCDVFSFG 170
               APEL +     +   D++S G
Sbjct: 174 ----APELLLGAKEYSTAIDMWSVG 194

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 24/126 (19%)

Query: 61  LAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFP 120
           L   P  L  +        L +  V  + G+ YL     +  +H D+   + +L E+   
Sbjct: 103 LGGLPEKLPLQT-------LLKFMVDIALGMEYLSN---RNFIHRDLAARNCMLREDMTV 152

Query: 121 KAADFGLA-KLYNREHTHITSTGRRRTPGCEAPELWMPYS------VTQKCDVFSFGMLL 173
             ADFGL+ K+Y+ ++        R+    + P  W+          T K DV++FG+ +
Sbjct: 153 CVADFGLSKKIYSGDYY-------RQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTM 205

Query: 174 FEVVGR 179
           +E+  R
Sbjct: 206 WEIATR 211

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 14/115 (12%)

Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + +LH+     IV+ D+KPE++LLD        DFGL+K  N      T+T    T    
Sbjct: 109 LEHLHK---YDIVYRDLKPENILLDATGHIALCDFGLSKA-NLTDNKTTNTFCGTTEYL- 163

Query: 151 APELWM-PYSVTQKCDVFSFGMLLFEV--------VGRRRNLEKEISEGQEWFPK 196
           APE+ +     T+  D +S G+L+FE+            + + + I+ G+  FPK
Sbjct: 164 APEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNIAFGKVRFPK 218

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 22/117 (18%)

Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK--LYNREHTH 137
           L EI ++    + +LH   +Q I++ D+KPE++LLD     K  DFGL K  ++    TH
Sbjct: 106 LSEISLA----LEHLH---QQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTH 158

Query: 138 ITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV---------GRRRNLEK 185
            T  G   T    APE+ M     +  D +S G L+++++          R++ ++K
Sbjct: 159 -TFCG---TIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKKTIDK 211

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 19/129 (14%)

Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           E    G L     YL   K  L    L       S  +AYL     ++ VH DI   +VL
Sbjct: 86  ELAPLGELRS---YLQVNKYSLDLASLILYSYQLSTALAYLES---KRFVHRDIAARNVL 139

Query: 114 LDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWM-PYSV-----TQKCDVF 167
           +      K  DFGL++    E  +  S G+        P  WM P S+     T   DV+
Sbjct: 140 VSSPDCVKLGDFGLSRYLEDESYYKASKGK-------LPIKWMAPESINFRRFTSASDVW 192

Query: 168 SFGMLLFEV 176
            FG+ ++E+
Sbjct: 193 MFGVCMWEI 201

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 18/98 (18%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLD-ENFFPKAADFGLAKLYNREHTH-------ITS 140
           +G+ Y+H      ++H D+KP +V ++ E+   K  DFGLA++ +  ++H       + +
Sbjct: 125 RGLKYIHS---ANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVT 181

Query: 141 TGRRRTPGCEAPELWM-PYSVTQKCDVFSFGMLLFEVV 177
              R      +P L + P + T+  D+++ G +  E++
Sbjct: 182 KWYR------SPRLLLSPNNYTKAIDMWAAGCIFAEML 213

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 68  LLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL 127
           L+ +   L +  L       + G+ +L     +  VH D+   +VL+ E    K  DFGL
Sbjct: 229 LINESPALSYMDLVGFSYQVANGMEFL---ASKNCVHRDLAARNVLICEGKLVKICDFGL 285

Query: 128 AKLYNREHTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           A+   R+  +I S G    P    APE       T   DV+SFG+LL+E+
Sbjct: 286 ARDIMRDSNYI-SKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEI 334

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-DD induce PDGFR beta homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR beta signaling leads to a variety of cellular effects including the stimulation of cell growth and chemotaxis, as well as the inhibition of apoptosis and GAP junctional communication. It is critical in normal angiogenesis as it is involved in the recruitment of pericytes and smooth muscle cells essential for vessel stability. Aberrant PDGFR beta expression is associated with some human cancers. The continuously-active fusion proteins of PDGFR beta with COL1A1 and TEL are associated with dermatofibrosarcoma protuberans (DFSP) and a subset of chronic myelomonocytic leukemia (CMML), respectively. Length = 401

>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 12/153 (7%)

Query: 24  MEMDKPIRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREI 83
           +E+ +  +++  QR    D  ++  GS D+E  +K  L+      L   ++L F      
Sbjct: 192 LEIKEASKYSDIQRSNY-DRPASYKGSNDSE--VKNLLSDDGSEGLTTLDLLSF------ 242

Query: 84  EVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGR 143
               ++G+ +L     +  VH D+   +VLL +    K  DFGLA+    +  +++    
Sbjct: 243 TYQVARGMEFL---ASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGST 299

Query: 144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
                  APE       T   DV+S+G+LL+E+
Sbjct: 300 FLPVKWMAPESIFDNLYTTLSDVWSYGILLWEI 332

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR alpha signaling is important in the formation of lung alveoli, intestinal villi, mesenchymal dermis, and hair follicles, as well as in the development of oligodendrocytes, retinal astrocytes, neural crest cells, and testicular cells. Aberrant PDGFR alpha expression is associated with some human cancers. Mutations in PDGFR alpha have been found within a subset of gastrointestinal stromal tumors (GISTs). An active fusion protein FIP1L1-PDGFR alpha, derived from interstitial deletion, is associated with idiopathic hypereosinophilic syndrome (HES) and chronic eosinophilic leukemia (CEL). Length = 400

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 9/99 (9%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           G+ +LH    + I++ D+K ++V+LD     K ADFG+ K        +T+     TP  
Sbjct: 113 GLFFLHS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCK--ENMWDGVTTKTFCGTPDY 167

Query: 150 EAPEL--WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE 186
            APE+  + PY   +  D ++FG+LL+E++  +   E E
Sbjct: 168 IAPEIIAYQPYG--KSVDWWAFGVLLYEMLAGQAPFEGE 204

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 81  REIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITS 140
           R+I +  +K + +LH  C   +V  ++ PE +++D    P      L  L   +     S
Sbjct: 783 RKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTDTKCFIS 841

Query: 141 TGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
           +         APE      +T+K D++ FG++L E++  +   + E         +W R
Sbjct: 842 SAYV------APETRETKDITEKSDIYGFGLILIELLTGKSPADAE-FGVHGSIVEWAR 893

Length = 968

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 11/80 (13%)

Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR---E 134
             +++I   T + + + H   +   +H D+KPE++L+ +    K  DFG A++      +
Sbjct: 100 HLIKKIIWQTLQAVNFCH---KHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDD 156

Query: 135 HTHITSTGRRRTPGCEAPEL 154
           +T   +T   R     APEL
Sbjct: 157 YTDYVATRWYR-----APEL 171

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 10/110 (9%)

Query: 70  CKKN--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL 127
            K     L   Q+ E  +    G+ Y+H+   ++I+H D+K +++ L  N   K  DFG+
Sbjct: 96  LKHTGKTLSENQVCEWFIQLLLGVHYMHQ---RRILHRDLKAKNIFLKNNLL-KIGDFGV 151

Query: 128 AK-LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           ++ L        T TG   TP   +PE         K D++S G +L+E+
Sbjct: 152 SRLLMGSCDLATTFTG---TPYYMSPEALKHQGYDSKSDIWSLGCILYEM 198

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 7/47 (14%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLL----DENFFPKAADFGLAKLYN 132
           G+ YLH      ++H D+KP ++L+     E    K  D GLA+L+N
Sbjct: 120 GVHYLHS---NWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFN 163

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 21/103 (20%)

Query: 101 KIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSV 160
            I++ DIK E++LLD        DFGL+K +      +     R    C   E   P  +
Sbjct: 125 GIIYRDIKLENILLDSEGHVVLTDFGLSKEF------LAEEEERAYSFCGTIEYMAPEVI 178

Query: 161 TQK-------CDVFSFGMLLFEV--------VGRRRNLEKEIS 188
                      D +S G+L FE+        V   +N + EIS
Sbjct: 179 RGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEIS 221

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK 129
           +G+AY+H    Q I+H D+KP+++L+      K ADFGLA+
Sbjct: 114 RGLAYIH---GQHILHRDLKPQNLLISYLGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 5/79 (6%)

Query: 103 VHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVT- 161
           +H D+KP+++LLD++   K ADFG     +        T    TP   +PE+        
Sbjct: 164 IHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTA-VGTPDYISPEVLKSQGGDG 222

Query: 162 ---QKCDVFSFGMLLFEVV 177
              ++CD +S G+ L+E++
Sbjct: 223 YYGRECDWWSVGVFLYEML 241

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 11/110 (10%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           GI +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T   
Sbjct: 131 GIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAG---TSFMMTPYVVTRYY 184

Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
            APE+ +     +  D++S G ++ E+V       K +  G+++  +W +
Sbjct: 185 RAPEVILGMGYKENVDIWSVGCIMGEMV-----RHKILFPGRDYIDQWNK 229

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 14/109 (12%)

Query: 73  NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLY 131
           NILG     +I ++  +G+ YL E+   KI+H D+KP ++L++     K  DFG++ +L 
Sbjct: 99  NILG-----KISIAVLRGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI 151

Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV-VGR 179
           +      +  G R      +PE       T + D++S G+ L E+ +GR
Sbjct: 152 DSMAN--SFVGTRSY---MSPERLQGTHYTVQSDIWSLGLSLVEMAIGR 195

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 38.9 bits (90), Expect = 8e-04
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 17/138 (12%)

Query: 45  SNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVH 104
           S LVG  D    +  +LA G    +  +  +  GQ+  +     + + +LH     +++H
Sbjct: 85  SYLVG--DELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHS---NQVIH 139

Query: 105 YDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR-----TPGCEAPELWMPYS 159
            DIK +++LL  +   K  DFG           IT    +R     TP   APE+    +
Sbjct: 140 RDIKSDNILLGMDGSVKLTDFGFC-------AQITPEQSKRSTMVGTPYWMAPEVVTRKA 192

Query: 160 VTQKCDVFSFGMLLFEVV 177
              K D++S G++  E++
Sbjct: 193 YGPKVDIWSLGIMAIEMI 210

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 35/141 (24%), Positives = 53/141 (37%), Gaps = 46/141 (32%)

Query: 103 VHYDIKPESVLLDENFFPKAADFGL---------AKLYN--------------------- 132
           +H DIKP+++L+D +   K  DFGL         +K Y                      
Sbjct: 123 IHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPAN 182

Query: 133 ---------------REHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFE-V 176
                          R+H    +     TP   APE+ +    TQ CD +S G++L+E +
Sbjct: 183 CRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEML 242

Query: 177 VGRRRNLEKEISEGQEWFPKW 197
           VG+   L +   E Q     W
Sbjct: 243 VGQPPFLAQTPLETQMKVINW 263

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It may be a component of the mitotic exit network in higher eukaryotes. Length = 382

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 38.9 bits (90), Expect = 0.001
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 22/109 (20%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA----KLYNRE 134
           Q++ I     + + YLH     KI+H D+K  +VLL  +   K ADFG++    K   R 
Sbjct: 111 QIQVICRQMLEALQYLHS---MKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRR 167

Query: 135 HTHITSTGRRRTPGCEAPELWM-------PYSVTQKCDVFSFGMLLFEV 176
            + I       TP   APE+ M       PY    K D++S G+ L E+
Sbjct: 168 DSFIG------TPYWMAPEVVMCETMKDTPYDY--KADIWSLGITLIEM 208

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 38.6 bits (89), Expect = 0.001
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%)

Query: 45  SNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVH 104
           S LVG  D    +  +LA G    +  +  +   Q+  +     + + +LH     +++H
Sbjct: 84  SFLVG--DELFVVMEYLAGGSLTDVVTETCMDEAQIAAVCRECLQALEFLHA---NQVIH 138

Query: 105 YDIKPESVLLDENFFPKAADFGL-AKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQK 163
            DIK ++VLL  +   K  DFG  A++   +    T  G   TP   APE+    +   K
Sbjct: 139 RDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVG---TPYWMAPEVVTRKAYGPK 195

Query: 164 CDVFSFGMLLFEVV 177
            D++S G++  E+V
Sbjct: 196 VDIWSLGIMAIEMV 209

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 85  VSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRR 144
           V     + ++H    ++++H DIKP +V +      K  D GL + ++ + T   S    
Sbjct: 113 VQLCSAVEHMHS---RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSL--V 167

Query: 145 RTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            TP   +PE         K D++S G LL+E+
Sbjct: 168 GTPYYMSPERIHENGYNFKSDIWSLGCLLYEM 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA 128
             LR I  +  KG+ +L EE    I+H D+KP +VL++ N   K  DFG++
Sbjct: 102 DVLRRITYAVVKGLKFLKEE--HNIIHRDVKPTNVLVNGNGQVKLCDFGVS 150

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase, Kit

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           +KG+++L     +  +H D+   ++LL      K  DFGLA+    +  ++     R   
Sbjct: 224 AKGMSFL---ASKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPV 280

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
              APE       T + DV+S+G+LL+E+
Sbjct: 281 KWMAPESIFNCVYTFESDVWSYGILLWEI 309

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. Kit signaling is involved in major cellular functions including cell survival, proliferation, differentiation, adhesion, and chemotaxis. Mutations in Kit, which result in constitutive ligand-independent activation, are found in human cancers such as gastrointestinal stromal tumor (GIST) and testicular germ cell tumor (TGCT). The aberrant expression of Kit and/or SCF is associated with other tumor types such as systemic mastocytosis and cancers of the breast, neurons, lung, prostate, colon, and rectum. Although the structure of the human Kit catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 375

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)

Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+ L  G    I +  + G+ YL        VH D+   ++L+ E    K +D GL++ +
Sbjct: 118 KSSLDHGDFLHIAIQIAAGMEYLSSHF---FVHKDLAARNILIGEQLHVKISDLGLSREI 174

Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPYSV------TQKCDVFSFGMLLFEV 176
           Y+ ++        R  P    P  WMP         +   D++SFG++L+E+
Sbjct: 175 YSADYY-------RVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEI 219

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 9/102 (8%)

Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHI 138
           L ++ ++  +G+AYL E  + +I+H D+KP ++L++     K  DFG++ +L +      
Sbjct: 105 LGKVSIAVLRGLAYLRE--KHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSF 162

Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV-VGR 179
             T         +PE       + + D++S G+ L E+ +GR
Sbjct: 163 VGTRSYM-----SPERLQGTHYSVQSDIWSMGLSLVELAIGR 199

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHI 138
           L ++ ++  KG+ YL E  + KI+H D+KP ++L++     K  DFG++ +L +      
Sbjct: 105 LGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSF 162

Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV-VGR 179
             T    +     PE       + + D++S G+ L E+ +GR
Sbjct: 163 VGTRSYMS-----PERLQGTHYSVQSDIWSMGLSLVEMAIGR 199

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 17/106 (16%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHTH 137
           QL  + +  + G++YLH   ++ ++H DI   + ++DE    K  D  L++ L+  ++ H
Sbjct: 118 QLVHMAIQIACGMSYLH---KRGVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDY-H 173

Query: 138 ITSTGRRRTPGCEAPELWMPYSVTQK------CDVFSFGMLLFEVV 177
                  R      P  WM              DV+SFG+LL+E++
Sbjct: 174 CLGDNENR------PVKWMALESLVNKEYSSASDVWSFGVLLWELM 213

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 3/109 (2%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL  +   LG  Q+  +       I Y+H    + I+H DIK E+VL++        DFG
Sbjct: 249 YLGARLRPLGLAQVTAVARQLLSAIDYIH---GEGIIHRDIKTENVLVNGPEDICLGDFG 305

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFE 175
            A       +     G   T    APE+      T   D++S G+++FE
Sbjct: 306 AACFARGSWSTPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFE 354

Length = 461

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 7/107 (6%)

Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL- 130
           K+ L       I +  + G+ YL        VH D+   + L+ E    K +DFGL++  
Sbjct: 118 KSSLDCSDFLHIAIQIAAGMEYLSS---HHFVHRDLAARNCLVGEGLTVKISDFGLSRDI 174

Query: 131 YNREHTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           Y+ ++  + S  +   P     PE  +    T + D++SFG++L+E+
Sbjct: 175 YSADYYRVQS--KSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEI 219

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 100 QKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYS 159
           ++++H DIKP +V +      K  D GL + ++ + T   S     TP   +PE      
Sbjct: 125 RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSL--VGTPYYMSPERIHENG 182

Query: 160 VTQKCDVFSFGMLLFEV 176
              K D++S G LL+E+
Sbjct: 183 YNFKSDIWSLGCLLYEM 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 17/100 (17%)

Query: 85  VSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHTHITSTGR 143
           V  +KG+ YL E     +VH ++   ++LL  +   + ADFG+A  LY  +  +  S  +
Sbjct: 116 VQIAKGMYYLEEHR---MVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHK 172

Query: 144 RRTPGCEAPELWMPYS------VTQKCDVFSFGMLLFEVV 177
                   P  WM          T + DV+S+G+ ++E++
Sbjct: 173 -------TPIKWMALESILFGRYTHQSDVWSYGVTVWEMM 205

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 17/107 (15%)

Query: 77  FGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREH 135
           +  L  +    + G+ YL        VH D+   + L+ +N+  K ADFG+++ LY+ ++
Sbjct: 129 YSTLIFMATQIASGMKYLSS---LNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDY 185

Query: 136 THITSTGRRRTPGCEAPELWMPYS------VTQKCDVFSFGMLLFEV 176
             I   GR        P  WM +        T   DV++FG+ L+E+
Sbjct: 186 YRI--QGR-----AVLPIRWMSWESILLGKFTTASDVWAFGVTLWEI 225

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR--- 145
           +G++YLH      IVH DIK  ++L D     K  DFG +K    +   ++ TG R    
Sbjct: 117 EGMSYLHS---NMIVHRDIKGANILRDSAGNVKLGDFGASK--RLQTICMSGTGIRSVTG 171

Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
           TP   +PE+       +K DV+S G  + E++  +
Sbjct: 172 TPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEK 206

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHTHITSTGRRRT 146
           + G+AYL+    +K VH D+   + ++  +F  K  DFG+ + +Y  ++      G    
Sbjct: 129 ADGMAYLNA---KKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPV 185

Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               APE       T   D++SFG++L+E+
Sbjct: 186 RWM-APESLKDGVFTTSSDMWSFGVVLWEI 214

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 36/143 (25%)

Query: 68  LLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL 127
           LL KK+ L     +     T   I  +H+      +H DIKP+++LLD     K +DFGL
Sbjct: 91  LLMKKDTLSEEATQFYIAETVLAIDAIHQ---LGFIHRDIKPDNLLLDAKGHVKLSDFGL 147

Query: 128 AKLYNREH--------THITST------------------GRRR-------TPGCEAPEL 154
                + H        TH   +                   RR+       TP   APE+
Sbjct: 148 CTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEV 207

Query: 155 WMPYSVTQKCDVFSFGMLLFEVV 177
           +M     + CD +S G++++E++
Sbjct: 208 FMQTGYNKLCDWWSLGVIMYEML 230

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite outgrowth. It is also implicated in fear conditioning as it contributes to the coupling of neuronal morphological changes with fear-memory consolidation. NDR2 is also referred to as STK38-like. Length = 360

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 11/94 (11%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREH----THITSTG 142
            +A  H    Q IVH D+KP+++++         K  DFG+  L           +T T 
Sbjct: 91  ALACAH---NQGIVHRDLKPQNIMVSQTGVRPHAKVLDFGIGTLLPGVRDADVATLTRTT 147

Query: 143 RRR-TPGCEAPELWMPYSVTQKCDVFSFGMLLFE 175
               TP   APE      VT   D++++G++  E
Sbjct: 148 EVLGTPTYCAPEQLRGEPVTPNSDLYAWGLIFLE 181

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 6/88 (6%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           GI +LH      I+H D+KP ++++  +   K  DFGLA+      T+   T    T   
Sbjct: 135 GIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAC---TNFMMTPYVVTRYY 188

Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            APE+ +     +  D++S G ++ E+V
Sbjct: 189 RAPEVILGMGYKENVDIWSVGCIMGELV 216

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 4/43 (9%)

Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL-YNRE 134
           YLH   R  I+H D+KP+++L+      K  DFGL+K+  NRE
Sbjct: 119 YLH---RHGIIHRDLKPDNMLISNEGHIKLTDFGLSKVTLNRE 158

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 45/118 (38%)

Query: 103 VHYDIKPESVLLDENFFPKAADFGLAKLYNREH-------------THITSTGR------ 143
           +H DIKP+++L+D     K +DFGL+  ++++H                    R      
Sbjct: 123 IHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVD 182

Query: 144 ------------------RR--------TPGCEAPELWMPYSVTQKCDVFSFGMLLFE 175
                             RR        TP   APE+++     Q+CD +S G ++FE
Sbjct: 183 SINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFE 240

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 16/100 (16%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-----LYNREHTHITSTGR 143
            G+  LH   +   +H D+ P ++ ++     K ADFGLA+      Y+   +   +  R
Sbjct: 130 NGLNVLH---KWYFMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQR 186

Query: 144 RR-------TPGCEAPELWM-PYSVTQKCDVFSFGMLLFE 175
           R        T    APEL M         D++S G +  E
Sbjct: 187 REEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAE 226

Length = 335

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 18/95 (18%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHTHITSTGRRRTP 147
            G+ +L      + VH D+   + L+      K +   L+K +YN E+  + +       
Sbjct: 128 LGMDHLS---NARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNA------ 178

Query: 148 GCEAPELWMPYSVTQ------KCDVFSFGMLLFEV 176
               P  W+     Q      K DV+SFG+L++EV
Sbjct: 179 --LIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEV 211

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL-YNREHTHITSTGRRRT 146
           +  + YLH      IV+ D+KPE++LLD        DFGL K    +  T  T  G   T
Sbjct: 106 ASALGYLHS---INIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCG---T 159

Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           P   APE+          D +  G +L+E++
Sbjct: 160 PEYLAPEVIRKQPYDNTVDWWCLGAVLYEML 190

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 12/96 (12%)

Query: 91  IAYLHEECRQ--------KIVHYDIKPESVLLDENFFPKAADFGL-AKLYNREHTHITST 141
           IA +  EC Q        +++H DIK +++LL  +   K  DFG  A++   +    T  
Sbjct: 117 IAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMV 176

Query: 142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           G   TP   APE+    +   K D++S G++  E+V
Sbjct: 177 G---TPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMV 209

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 15/95 (15%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           + G+AYL+     K VH D+   + ++ E+F  K  DFG+ +       + T   R+   
Sbjct: 129 ADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTR-----DIYETDYYRKGGK 180

Query: 148 GCEAPELWM-PYSV-----TQKCDVFSFGMLLFEV 176
           G   P  WM P S+     T   DV+SFG++L+E+
Sbjct: 181 GL-LPVRWMSPESLKDGVFTTYSDVWSFGVVLWEI 214

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           S  + YLHE   + I++ D+K ++VLLD     K  D+G+ K   R     T++    TP
Sbjct: 106 SLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD--TTSTFCGTP 160

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
              APE+          D ++ G+L+FE++  R
Sbjct: 161 NYIAPEILRGEDYGFSVDWWALGVLMFEMMAGR 193

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 20/95 (21%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           GI +LH      I+H D+KP ++++  +   K  DFGLA+           T    TP  
Sbjct: 130 GIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLAR--------TAGTSFMMTPYV 178

Query: 150 -----EAPE--LWMPYSVTQKCDVFSFGMLLFEVV 177
                 APE  L M Y   +  D++S G ++ E++
Sbjct: 179 VTRYYRAPEVILGMGYK--ENVDIWSVGCIMGEMI 211

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 33/99 (33%), Positives = 42/99 (42%), Gaps = 20/99 (20%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLD---ENFFPKAADFGLAKLYNREHTHITSTGRR 144
           +KG  YL E      +H DI   + LL         K ADFG+A+        I      
Sbjct: 126 AKGCKYLEE---NHFIHRDIAARNCLLTCKGPGRVAKIADFGMAR-------DIYRASYY 175

Query: 145 RTPGCEA-PELWMPYSV------TQKCDVFSFGMLLFEV 176
           R  G    P  WMP         T K DV+SFG+LL+E+
Sbjct: 176 RKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEI 214

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 15/95 (15%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           ++G+ +L     +  +H D+   +VLL +    K  DFGLA+    +  ++     R   
Sbjct: 222 AQGMDFL---ASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNAR--- 275

Query: 148 GCEAPELWM-PYSV-----TQKCDVFSFGMLLFEV 176
               P  WM P S+     T + DV+S+G+LL+E+
Sbjct: 276 ---LPVKWMAPESIFDCVYTVQSDVWSYGILLWEI 307

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 12/111 (10%)

Query: 74  ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFP-----KAADFGLA 128
           +L   +L +I +  +KG  YL    +   +H D+   + L+ E  +      K  DFGLA
Sbjct: 102 LLTLKELLDICLDVAKGCVYLE---QMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLA 158

Query: 129 K-LYNREHTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           + +Y  ++      G    P    APE  +    T + DV+SFG+L++E++
Sbjct: 159 RDIYKSDYYRKE--GEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEIL 207

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 103 VHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYS--- 159
           +H D+KP+++LLD++   K ADFG     N+E      T    TP   +PE+        
Sbjct: 164 IHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTA-VGTPDYISPEVLKSQGGDG 222

Query: 160 -VTQKCDVFSFGMLLFEVV 177
              ++CD +S G+ L+E++
Sbjct: 223 YYGRECDWWSVGVFLYEML 241

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 36/143 (25%)

Query: 68  LLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL 127
           LL KK+ L   + +     T   I  +H+      +H DIKP+++LLD     K +DFGL
Sbjct: 91  LLMKKDTLTEEETQFYIAETVLAIDSIHQ---LGFIHRDIKPDNLLLDSKGHVKLSDFGL 147

Query: 128 AKLYNREH----------------THITSTGRRR-----------------TPGCEAPEL 154
                + H                T      +R+                 TP   APE+
Sbjct: 148 CTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEV 207

Query: 155 WMPYSVTQKCDVFSFGMLLFEVV 177
           +M     + CD +S G++++E++
Sbjct: 208 FMQTGYNKLCDWWSLGVIMYEML 230

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient of NDR1 remain viable and fertile. However, these mice develop T-cell lymphomas and appear to be hypersenstive to carcinogenic treatment. NDR1 appears to act as a tumor suppressor. NDR1 is also called STK38. Length = 363

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 37.0 bits (85), Expect = 0.003
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 6/80 (7%)

Query: 103 VHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQ 162
           VH DIKP+++L+D N   + ADFG + L   E   + S+    TP   +PE+       +
Sbjct: 124 VHRDIKPDNILMDMNGHIRLADFG-SCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGK 182

Query: 163 -----KCDVFSFGMLLFEVV 177
                +CD +S G+ ++E++
Sbjct: 183 GKYGPECDWWSLGVCMYEML 202

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 5/96 (5%)

Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + +LH+   + I++ D+K ++VLLD     K ADFG+ K         T++    TP   
Sbjct: 109 LMFLHD---KGIIYRDLKLDNVLLDHEGHCKLADFGMCK--EGIFNGKTTSTFCGTPDYI 163

Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE 186
           APE+          D ++ G+LL+E++      E E
Sbjct: 164 APEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAE 199

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 37.0 bits (85), Expect = 0.004
 Identities = 16/41 (39%), Positives = 30/41 (73%), Gaps = 3/41 (7%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK 129
           +G++Y+H+   + I+H D+KP+++L+ +    K ADFGLA+
Sbjct: 114 RGLSYIHQ---RYILHRDLKPQNLLISDTGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 33/134 (24%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAA--DFGLAKLYNRE------------- 134
            I Y+H    + ++H D+KP+++LL    F +    D+G A     E             
Sbjct: 125 TIEYVHS---KGVLHRDLKPDNILL--GLFGEVVILDWGAAIFKKLEEEDLLDIDVDERN 179

Query: 135 --HTHITSTGR-RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV----------GRRR 181
             ++ +T  G+   TP   APE  +    ++  D+++ G++L++++          GR+ 
Sbjct: 180 ICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRKI 239

Query: 182 NLEKEISEGQEWFP 195
           +    I    E  P
Sbjct: 240 SYRDVILSPIEVAP 253

Length = 932

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.98
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.98
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.98
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.98
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.98
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.98
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.98
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.98
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.98
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.98
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.98
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.98
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.98
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.98
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.98
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.97
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.97
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.97
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.97
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.97
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.97
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.97
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.97
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.97
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.97
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.97
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.97
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.97
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.97
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.97
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.97
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.97
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.97
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.97
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.97
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.97
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.97
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.97
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.97
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.97
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.97
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.97
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.97
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.97
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.97
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.97
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.97
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.97
PTZ00283	496	serine/threonine protein kinase; Provisional	99.97
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.97
PTZ00267	478	NIMA-related protein kinase; Provisional	99.97
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.97
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.97
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.97
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.97
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.97
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.97
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.97
PHA03212	391	serine/threonine kinase US3; Provisional	99.97
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.97
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.97
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.97
KOG0584	632	consensus Serine/threonine protein kinase [General	99.97
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.97
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.97
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.97
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.97
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.96
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.96
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.96
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.96
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.96
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.96
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.96
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.96
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.96
PHA03211	461	serine/threonine kinase US3; Provisional	99.96
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.96
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.96
PTZ00036	440	glycogen synthase kinase; Provisional	99.96
PHA02988	283	hypothetical protein; Provisional	99.96
KOG0589	426	consensus Serine/threonine protein kinase [General	99.96
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.96
PTZ00284	467	protein kinase; Provisional	99.96
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.96
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.96
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.96
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.96
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.96
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.96
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.96
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.96
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.96
PHA03207	392	serine/threonine kinase US3; Provisional	99.96
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.96
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.96
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.96
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.96
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.96
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.96
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.96
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.96
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.96
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.96
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.96
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.96
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.96
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.96
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.96
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.96
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.96
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.96
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.96
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.96
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.96
PHA02882	294	putative serine/threonine kinase; Provisional	99.96
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.96
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.96
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.95
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.95
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.95
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.95
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.95
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.95
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.95
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.95
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.95
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.95
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.95
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.95
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.95
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.95
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.95
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.95
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.95
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.95
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.95
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.95
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.95
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.95
PHA03209	357	serine/threonine kinase US3; Provisional	99.95
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.95
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.95
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.95
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.95
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.95
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.95
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.95
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.95
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.95
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.95
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.95
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.95
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.95
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.95
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.95
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.95
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.95
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.95
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.95
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.95
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.95
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.95
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.95
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.95
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.95
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.95
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.95
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.95
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.95
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.95
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.95
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.95
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.95
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.95
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.95
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.95
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.95
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.95
KOG3653	534	consensus Transforming growth factor beta/activin	99.95
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.95
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.95
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.95
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.95
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.95
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.95
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.95
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.95
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.95
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.95
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.95
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.95
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.95
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.95
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.95
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.95
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.95
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.95
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.95
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.95
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.95
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.95
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.95
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.95
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.95
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.95
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.95
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.95
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.95
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.95
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.95
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.95
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.95
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.95
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.95
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.95
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.95
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.95
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.95
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.95
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.94
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.94
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.94
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.94
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.94
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.94
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.94
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.94
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.94
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.94
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.94
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.94
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.94
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.94
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.94
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.94
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.94
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.94
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.94
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.94
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.94
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.94
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.94
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.94
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.94
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.94
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.94
PHA03210	501	serine/threonine kinase US3; Provisional	99.94
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.94
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.94
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.94
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.94
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.94
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.94
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.94
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.94
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.94
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.94
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.94
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.94
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.94
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.94
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.94
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.94
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.94
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.94
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.94
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.94
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.94
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.94
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.94
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.94
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.94
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.94
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.94
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.94
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.94
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.94
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.94
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.94
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.94
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.94
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.94
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.94
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.94
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.94
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.94
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.94
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.94
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.94
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.94
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.94
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.94
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.94
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.94
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.94
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.94
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.94
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.94
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.94
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.94
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.94
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.94
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.94
PLN00009	294	cyclin-dependent kinase A; Provisional	99.94
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.93
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.93
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.93
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.93
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.93
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.93
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.93
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.93
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.93
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.93
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.93
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.93
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.93
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.93
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.93
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.93
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.93
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.93
KOG0586	596	consensus Serine/threonine protein kinase [General	99.93
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.93
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.93
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.93
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.93
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.93
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.93
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.93
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.93
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.93
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.93
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.93
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.93
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.93
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.93
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.93
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.93
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.93
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.93
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.93
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.92
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.92
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.92
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.92
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.92
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.92
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.92
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.92
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.91
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.91
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.91
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.91
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.91
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.9
PLN00181	793	protein SPA1-RELATED; Provisional	99.9
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.9
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.9
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.9
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.9
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.89
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.89
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.89
KOG1152	772	consensus Signal transduction serine/threonine kin	99.88
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.87
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.86
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.85
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.85
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.85
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.84
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.84
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.8
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.8
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.79
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.78
PRK09188	365	serine/threonine protein kinase; Provisional	99.75
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.75
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.71
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.7
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.7
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.69
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.68
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.66
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.66
PRK12274	218	serine/threonine protein kinase; Provisional	99.62
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.62
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.58
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.57
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.57
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.52
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.5
smart00090	237	RIO RIO-like kinase.	99.42
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.41
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.38
PRK10345	210	hypothetical protein; Provisional	99.35
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.3
PRK14879	211	serine/threonine protein kinase; Provisional	99.28
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.26
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.22
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.2
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.13
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.11
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.03
KOG1266	458	consensus Protein kinase [Signal transduction mech	98.99
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.92
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.8
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.74
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.56
COG4248	637	Uncharacterized protein with protein kinase and he	98.54
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.5
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.49
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.49
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.37
KOG1243	690	consensus Protein kinase [General function predict	98.36
KOG3087	229	consensus Serine/threonine protein kinase [General	98.34
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.31
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.21
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.13
KOG2137	700	consensus Protein kinase [Signal transduction mech	97.99
PRK09902	216	hypothetical protein; Provisional	97.75
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	97.43
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	97.4
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	97.36
COG0478	304	RIO-like serine/threonine protein kinase fused to	97.19
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	96.48
KOG0576	829	consensus Mitogen-activated protein kinase kinase	96.4
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	96.23
PRK05231	319	homoserine kinase; Provisional	95.21
COG0661	517	AarF Predicted unusual protein kinase [General fun	95.18
KOG1235	538	consensus Predicted unusual protein kinase [Genera	94.83
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	94.69
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	94.6
PHA03111	444	Ser/Thr kinase; Provisional	94.56
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	94.5
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	94.49
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	94.26
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	94.23
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	94.21
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	93.87
PF01636	239	APH: Phosphotransferase enzyme family This family	93.66
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	93.63
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	93.6
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	93.02
PF05445	434	Pox_ser-thr_kin: Poxvirus serine/threonine protein	92.94
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	92.89
PRK10271	188	thiK thiamine kinase; Provisional	92.75
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	92.13
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	92.02
COG2334	331	Putative homoserine kinase type II (protein kinase	92.01
PRK06148	1013	hypothetical protein; Provisional	91.88
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	91.78
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	91.53
PLN02236	344	choline kinase	91.38
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	90.9
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	90.88
KOG2268	465	consensus Serine/threonine protein kinase [Signal	90.16
PRK06149	972	hypothetical protein; Provisional	89.58
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	89.42
PRK11768	325	serine/threonine protein kinase; Provisional	88.01
COG4499	434	Predicted membrane protein [Function unknown]	87.65
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	87.39
PTZ00384	383	choline kinase; Provisional	84.83
PF02958	294	EcKinase: Ecdysteroid kinase; InterPro: IPR004119	83.9
PRK09550	401	mtnK methylthioribose kinase; Reviewed	83.69
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	82.67
KOG1236	565	consensus Predicted unusual protein kinase [Genera	82.6

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=7e-40  Score=258.70  Aligned_cols=183  Identities=20%  Similarity=0.300  Sum_probs=153.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      |||++++..+..||.|--.... ...+....+..|..++...+|+|+|+      ..++.++++||+.+|+|..+++.. 
T Consensus        26 Vykg~h~~~~~~VAIK~i~~~~-l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVMEyC~gGDLs~yi~~~~  104 (429)
T KOG0595|consen   26 VYKGRHKKSGTEVAIKCIAKKK-LNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVMEYCNGGDLSDYIRRRG  104 (429)
T ss_pred             EEEeEeccCCceEEeeeehhhc-cCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEEEeCCCCCHHHHHHHcC
Confidence            7999999888888876432221 12222334667888888999999885      567788999999999999999776 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC------CceEEeeeecceeccccCcccccCCCCCCC
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN------FFPKAADFGLAKLYNREHTHITSTGRRRTP  147 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~------~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~  147 (202)
                      .+++..++.++.||+.||++||+   ++||||||||+|||++..      -.+||+|||+|+.+....   .....+|+|
T Consensus       105 ~l~e~t~r~Fm~QLA~alq~L~~---~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~---~a~tlcGSp  178 (429)
T KOG0595|consen  105 RLPEATARHFMQQLASALQFLHE---NNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGS---MAETLCGSP  178 (429)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCchh---HHHHhhCCc
Confidence            79999999999999999999999   999999999999999764      468999999999876433   345578899


Q ss_pred             cccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          148 GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       148 ~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      .|||||++...+|+.|+|+||+|+++|++++|++||+.....+
T Consensus       179 lYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~e  221 (429)
T KOG0595|consen  179 LYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAETPKE  221 (429)
T ss_pred             cccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccCHHH
Confidence            9999999999999999999999999999999999999665543

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=8.7e-39  Score=249.90  Aligned_cols=183  Identities=21%  Similarity=0.295  Sum_probs=157.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc------cccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV------GSEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||.+|.+..+++.|.|+.++..-.+.........|..++...+||-++      ..++..+++.+++.||.|+..++ .+
T Consensus        41 V~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylVld~~~GGeLf~hL~~eg  120 (357)
T KOG0598|consen   41 VFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLVLDYLNGGELFYHLQREG  120 (357)
T ss_pred             EEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEEEeccCCccHHHHHHhcC
Confidence            678899999999999998777666554555567777788889999776      35666789999999999988886 56


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..++.++.+|+.||.|||+   .+||||||||+|||++..|+++|+||||++..-...  ......+||+.|||||
T Consensus       121 ~F~E~~arfYlaEi~lAL~~LH~---~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~--~~t~tfcGT~eYmAPE  195 (357)
T KOG0598|consen  121 RFSEDRARFYLAEIVLALGYLHS---KGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDG--DATRTFCGTPEYMAPE  195 (357)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHh---CCeeeccCCHHHeeecCCCcEEEeccccchhcccCC--CccccccCCccccChH
Confidence            79999999999999999999999   999999999999999999999999999998532221  1234478999999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..|+..+|+||+|+++|||++|.+||...+.
T Consensus       196 il~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~  230 (357)
T KOG0598|consen  196 ILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDV  230 (357)
T ss_pred             HHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccH
Confidence            99999999999999999999999999999987664

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.6e-37  Score=254.30  Aligned_cols=185  Identities=19%  Similarity=0.252  Sum_probs=160.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      +|++++..+++.+|.|+-.+..........+...|..+-...+|+||++      ...+.+++.|.++.++|..+.+++ 
T Consensus        34 cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivLELC~~~sL~el~Krrk  113 (592)
T KOG0575|consen   34 CYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVLELCHRGSLMELLKRRK  113 (592)
T ss_pred             EEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEEEecCCccHHHHHHhcC
Confidence            5889998888888888876655555556667888888888999999986      445567889999999999988754 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.+++.+..||+.||.|||+   .+|||||||..|++++.+.++||+|||||..+..+..  ...+.+|||.|+|||
T Consensus       114 ~ltEpEary~l~QIv~GlkYLH~---~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~E--rk~TlCGTPNYIAPE  188 (592)
T KOG0575|consen  114 PLTEPEARYFLRQIVEGLKYLHS---LGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGE--RKKTLCGTPNYIAPE  188 (592)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHh---cCceecccchhheeecCcCcEEecccceeeeecCccc--ccceecCCCcccChh
Confidence            59999999999999999999999   9999999999999999999999999999997754422  234568899999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      ++.....+..+||||+||++|-|+.|+|||....-.+
T Consensus       189 Vl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vke  225 (592)
T KOG0575|consen  189 VLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKE  225 (592)
T ss_pred             HhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHH
Confidence            9999999999999999999999999999999876544

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-37  Score=243.29  Aligned_cols=178  Identities=21%  Similarity=0.282  Sum_probs=153.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc------cc-cceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS------ED-TETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~~-~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      |||++++.++++.|.|+-  ......+..+.+..|..+....+++.+++.      .+ ...+.+|||++|+|..+.+. 
T Consensus        95 V~kv~Hk~t~~i~AlK~I--~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYMDgGSLd~~~k~~  172 (364)
T KOG0581|consen   95 VYKVRHKPTGKIYALKVI--LLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYMDGGSLDDILKRV  172 (364)
T ss_pred             EEEEEEcCCCeEEEEEee--cccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhcCCCCHHHHHhhc
Confidence            799999999999999875  223333445567777777778899999862      22 36688999999999998865 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      +++++.....++.++++||.|||..  ++||||||||+|+|+...|.+||+|||.++.+.+.    ...+..||..||||
T Consensus       173 g~i~E~~L~~ia~~VL~GL~YLh~~--~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS----~a~tfvGT~~YMsP  246 (364)
T KOG0581|consen  173 GRIPEPVLGKIARAVLRGLSYLHEE--RKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS----IANTFVGTSAYMSP  246 (364)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhc--cCeeeccCCHHHeeeccCCCEEeccccccHHhhhh----hcccccccccccCh
Confidence            6799999999999999999999963  89999999999999999999999999999876554    23557889999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      |-+.+..|+.++||||||+.++|+++|+.|+...
T Consensus       247 ERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~  280 (364)
T KOG0581|consen  247 ERISGESYSVKSDIWSLGLSLLELAIGRFPYPPP  280 (364)
T ss_pred             hhhcCCcCCcccceecccHHHHHHhhCCCCCCCc
Confidence            9999999999999999999999999999999875

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-36  Score=246.90  Aligned_cols=186  Identities=19%  Similarity=0.271  Sum_probs=156.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhc-c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCK-K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~   72 (202)
                      |++|++..++..+|.||..+.--....+..-...|...+... +||-++.      .....+++.++.++|.|..+++ .
T Consensus        89 V~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLYFvLe~A~nGdll~~i~K~  168 (604)
T KOG0592|consen   89 VVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLYFVLEYAPNGDLLDLIKKY  168 (604)
T ss_pred             EEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceEEEEEecCCCcHHHHHHHh
Confidence            789999999999999998777666666666666676655554 8886653      4445668889999999888775 4


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc---------ccc--C
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH---------ITS--T  141 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~---------~~~--~  141 (202)
                      +.+++..++.++.+|+.||+|||+   +|||||||||+|||++.+++++|.|||.|+.++.....         ...  .
T Consensus       169 Gsfde~caR~YAAeIldAleylH~---~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~  245 (604)
T KOG0592|consen  169 GSFDETCARFYAAEILDALEYLHS---NGIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRS  245 (604)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHh---cCceeccCChhheeEcCCCcEEEeeccccccCChhhccccCccCcccccCccc
Confidence            679999999999999999999999   99999999999999999999999999999987543221         112  4


Q ss_pred             CCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       142 ~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      ..+||-.|.+||++.....+..+|+|+|||++|+|+.|.+||...++-
T Consensus       246 SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~Ney  293 (604)
T KOG0592|consen  246 SFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEY  293 (604)
T ss_pred             ceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHH
Confidence            478999999999999999999999999999999999999999976654

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-36  Score=244.27  Aligned_cols=181  Identities=24%  Similarity=0.336  Sum_probs=148.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc------cc-cceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS------ED-TETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~~-~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++..++... ||+|+.......... ...|..|..++...+|||+++.      .. ...++++|+++|+|..++.. 
T Consensus        57 V~~~~~~g~~~-vavK~~~~~~~~~~~-~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~GsL~~~l~~~  134 (362)
T KOG0192|consen   57 VYKGKWRGTDV-VAVKIISDPDFDDES-RKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPGGSLSVLLHKK  134 (362)
T ss_pred             EEEEEeCCcee-EEEEEecchhcChHH-HHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCCCcHHHHHhhc
Confidence            56666666555 555544333322222 5679999999999999998841      12 35799999999999999955 


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHhCCCCC-eEEecCCCCcEEEcCCC-ceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           73 --NILGFGQLREIEVSTSKGIAYLHEECRQK-IVHYDIKPESVLLDENF-FPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        73 --~~~~~~~~~~~~~~i~~~l~~lH~~~~~~-iiHrdlk~~nil~~~~~-~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                        ..+++..+..++.+|+.|+.|||+   .+ ||||||||+|+|++.++ ++||+|||+++......  ...+...||+.
T Consensus       135 ~~~~l~~~~~l~~aldiArGm~YLH~---~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~--~~~~~~~GT~~  209 (362)
T KOG0192|consen  135 RKRKLPLKVRLRIALDIARGMEYLHS---EGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISK--TSMTSVAGTYR  209 (362)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHhc---CCCeeecccChhhEEEcCCCCEEEECCCccceeecccc--ccccCCCCCcc
Confidence              679999999999999999999999   77 99999999999999997 99999999998755432  22344678999


Q ss_pred             ccCCcccC--CCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          149 CEAPELWM--PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       149 y~aPe~~~--~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |||||++.  ...|+.|+||||||+++|||+||+.||.+..+
T Consensus       210 wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~  251 (362)
T KOG0192|consen  210 WMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAP  251 (362)
T ss_pred             ccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCH
Confidence            99999999  66999999999999999999999999998776

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=3e-36  Score=229.81  Aligned_cols=181  Identities=20%  Similarity=0.291  Sum_probs=156.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc------cccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV------GSEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      |..+|.+.++.+.|.|+.++.......+..-...|..++....||-++      ...+...+++++.++|.|+.++++ +
T Consensus        60 V~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvmeyv~GGElFS~Lrk~~  139 (355)
T KOG0616|consen   60 VHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVMEYVPGGELFSYLRKSG  139 (355)
T ss_pred             EEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEEeccCCccHHHHHHhcC
Confidence            456788889999999998877666555555566777778888888654      245566788999999999988865 6


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      ++++..++.++.|++.||+|||+   ++|++|||||+|||++++|.+|+.|||.|+.....     ....+|||-|+|||
T Consensus       140 rF~e~~arFYAAeivlAleylH~---~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~r-----T~TlCGTPeYLAPE  211 (355)
T KOG0616|consen  140 RFSEPHARFYAAEIVLALEYLHS---LDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGR-----TWTLCGTPEYLAPE  211 (355)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHh---cCeeeccCChHHeeeccCCcEEEEeccceEEecCc-----EEEecCCccccChH
Confidence            79999999999999999999999   99999999999999999999999999999976532     34578899999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      .++..+++.++|.||||+++|||+.|.+||...++.
T Consensus       212 ii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~  247 (355)
T KOG0616|consen  212 IIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPI  247 (355)
T ss_pred             HhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChH
Confidence            999999999999999999999999999999987774

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=2.8e-36  Score=245.06  Aligned_cols=188  Identities=21%  Similarity=0.297  Sum_probs=161.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc------cccccceEEEEEccCCchhhhh-ccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV------GSEDTETYIKGFLAMGPFYLLC-KKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~~~~~~~l~~~~-~~~   73 (202)
                      ||.|+.+.++.+.|.|+.++.+.....+..-...|..++...+.+.++      ....+.+++|+|++||.+..++ +.+
T Consensus       157 VrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYLiMEylPGGD~mTLL~~~~  236 (550)
T KOG0605|consen  157 VRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYLIMEYLPGGDMMTLLMRKD  236 (550)
T ss_pred             EEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEEEEEecCCccHHHHHHhcC
Confidence            789999999999999999998888777777677787778887777665      5778889999999999988777 456


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceecccc-------------------
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE-------------------  134 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~-------------------  134 (202)
                      .+++..++.++.+++.|++-+|+   .|+|||||||+|+|++..|++||+||||+..+...                   
T Consensus       237 ~L~e~~arfYiaE~vlAI~~iH~---~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~  313 (550)
T KOG0605|consen  237 TLTEDWARFYIAETVLAIESIHQ---LGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEA  313 (550)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHH---cCcccccCChhheeecCCCCEeeccccccchhhhhhhhhhhcchhhhhhhhccC
Confidence            79999999999999999999999   99999999999999999999999999999643110                   


Q ss_pred             ----Ccc---ccc-------------------CCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          135 ----HTH---ITS-------------------TGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       135 ----~~~---~~~-------------------~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                          ...   ...                   ...+|||-|||||++.+..|+..+|+||+||++|||+.|.|||+.+.+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~s~tp  393 (550)
T KOG0605|consen  314 KPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYPPFCSETP  393 (550)
T ss_pred             CCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHHHHHhCCCCCCCCCH
Confidence                000   000                   124799999999999999999999999999999999999999999988


Q ss_pred             ccc
Q 044746          189 EGQ  191 (202)
Q Consensus       189 ~~~  191 (202)
                      ++.
T Consensus       394 ~~T  396 (550)
T KOG0605|consen  394 QET  396 (550)
T ss_pred             HHH
Confidence            763

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2e-36  Score=244.42  Aligned_cols=187  Identities=21%  Similarity=0.243  Sum_probs=153.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc--------ccccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG--------SEDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      |||||+..+++.||.|-.+... ...+.++-...|..++...+|+||+.        ..+..+++.+||+. .|.+++..
T Consensus       133 VYkAr~~~tgkivALKKvr~d~-~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlVFeYMdh-DL~GLl~~  210 (560)
T KOG0600|consen  133 VYKARDLETGKIVALKKVRFDN-EKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLVFEYMDH-DLSGLLSS  210 (560)
T ss_pred             eeEeeecccCcEEEEEEeeccc-CCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEEEecccc-hhhhhhcC
Confidence            8999999999999975433332 22334555678888999999999874        23556677788874 56666655


Q ss_pred             C--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           73 N--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        73 ~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      .  .|+..+++.++.|++.||+|||+   ++|+|||||..|||++.+|.+||+|||||+++....... .+..+-|..|.
T Consensus       211 p~vkft~~qIKc~mkQLl~Gl~~cH~---~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~~-~T~rVvTLWYR  286 (560)
T KOG0600|consen  211 PGVKFTEPQIKCYMKQLLEGLEYCHS---RGVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSAP-YTSRVVTLWYR  286 (560)
T ss_pred             CCcccChHHHHHHHHHHHHHHHHHhh---cCeeeccccccceEEcCCCCEEeccccceeeccCCCCcc-cccceEEeecc
Confidence            4  69999999999999999999999   999999999999999999999999999999775544322 34445599999


Q ss_pred             CCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhcccccc
Q 044746          151 APELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEW  193 (202)
Q Consensus       151 aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~~~~  193 (202)
                      |||++.+. .|+..+|+||.||++.||++|++.|.+..+.+|..
T Consensus       287 pPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~  330 (560)
T KOG0600|consen  287 PPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLH  330 (560)
T ss_pred             ChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHH
Confidence            99999875 79999999999999999999999999998877644

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-36  Score=245.30  Aligned_cols=194  Identities=27%  Similarity=0.413  Sum_probs=155.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc---c---ccc-cceEEEEEccCCchhhhhccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV---G---SED-TETYIKGFLAMGPFYLLCKKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~---~~~-~~~~~~~~~~~~~l~~~~~~~   73 (202)
                      |||+.-.++ ..||+|.....  .... ..+|..|...+...+|+|++   |   +++ ...++.+|+++|+|.+.+...
T Consensus        91 VYkG~l~~~-~~vAVK~~~~~--~~~~-~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~~~~~LVYEym~nGsL~d~L~~~  166 (361)
T KOG1187|consen   91 VYKGVLSDG-TVVAVKRLSSN--SGQG-EREFLNEVEILSRLRHPNLVKLLGYCLEGGEHRLLVYEYMPNGSLEDHLHGK  166 (361)
T ss_pred             EEEEEECCC-CEEEEEEecCC--CCcc-hhHHHHHHHHHhcCCCcCcccEEEEEecCCceEEEEEEccCCCCHHHHhCCC
Confidence            566666666 55665522221  1111 44599999999999999876   3   333 478999999999999888554


Q ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccc-cCcccccCCCCCCCcc
Q 044746           74 ---ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR-EHTHITSTGRRRTPGC  149 (202)
Q Consensus        74 ---~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~-~~~~~~~~~~~gt~~y  149 (202)
                         .++|..+.+|+.++|.||+|||..+..+|||||||+.|||+|.++.+||+|||+|+.... ....... . .||.+|
T Consensus       167 ~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~~~~~-~-~gt~gY  244 (361)
T KOG1187|consen  167 KGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTSVSTT-V-MGTFGY  244 (361)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCccccceeee-c-CCCCcc
Confidence               689999999999999999999998877899999999999999999999999999975543 2211111 1 679999


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhccccccccccccc
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGRE  200 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~  200 (202)
                      +|||+...+..+.++||||||++++|++||++|.+...+.++..+..|++.
T Consensus       245 ~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~  295 (361)
T KOG1187|consen  245 LAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKP  295 (361)
T ss_pred             CChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHH
Confidence            999999988999999999999999999999999998776666668888754

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-36  Score=250.25  Aligned_cols=195  Identities=21%  Similarity=0.293  Sum_probs=165.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-cccc---cc---cccccceEEEEEccCCchhhhhccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSN---LV---GSEDTETYIKGFLAMGPFYLLCKKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~i---~~~~~~~~~~~~~~~~~l~~~~~~~   73 (202)
                      |+++..++.+++.|.|+.++..-...+.......|..+.... +||=   ..   ...+..+++++|..||.+..+.+.+
T Consensus       384 V~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~fvmey~~Ggdm~~~~~~~  463 (694)
T KOG0694|consen  384 VLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLFFVMEYVAGGDLMHHIHTD  463 (694)
T ss_pred             EEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEEEEEEecCCCcEEEEEecc
Confidence            677888999999999999988877777666666666655443 5773   22   4566778999999999988888889


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..++.++..++.||+|||+   ++||+||||.+|||+|..|++||+|||+++..-  .......+.+|||.|||||
T Consensus       464 ~F~e~rarfyaAev~l~L~fLH~---~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m--~~g~~TsTfCGTpey~aPE  538 (694)
T KOG0694|consen  464 VFSEPRARFYAAEVVLGLQFLHE---NGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGM--GQGDRTSTFCGTPEFLAPE  538 (694)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHh---cCceeeecchhheEEcccCcEEecccccccccC--CCCCccccccCChhhcChh
Confidence            99999999999999999999999   999999999999999999999999999998432  1222345678999999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhccc--------cccccccccc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG--------QEWFPKWGRE  200 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~--------~~~~~~~~~~  200 (202)
                      ++.+..|+..+|+|||||++|||+.|+.||.++++++        +..||.|+..
T Consensus       539 il~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee~FdsI~~d~~~yP~~ls~  593 (694)
T KOG0694|consen  539 VLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLSK  593 (694)
T ss_pred             hhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCCCCCCcccH
Confidence            9999999999999999999999999999999887764        5667888764

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.7e-36  Score=230.06  Aligned_cols=184  Identities=19%  Similarity=0.245  Sum_probs=153.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc--------cceEEEEEccCCchhhhhc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED--------TETYIKGFLAMGPFYLLCK-   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~l~~~~~-   71 (202)
                      |||++....+..+|.|--. ..............|..++...+||||+....        ...++++++..|.|...++ 
T Consensus        35 vykv~~~~~g~l~a~K~i~-f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivmE~c~~GDLsqmIk~  113 (375)
T KOG0591|consen   35 VYKVQCLLDGKLVALKKIQ-FGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVMELCDAGDLSQMIKH  113 (375)
T ss_pred             eEEeeeccCcchhhhhhcc-hhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHHHhhcccCHHHHHHH
Confidence            7899999888888866443 33333334455778888999999999985333        3568899999999988873 


Q ss_pred             ----cCCCCHHHHHHHHHHHHHHHHHHHhCC-CCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCC
Q 044746           72 ----KNILGFGQLREIEVSTSKGIAYLHEEC-RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT  146 (202)
Q Consensus        72 ----~~~~~~~~~~~~~~~i~~~l~~lH~~~-~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt  146 (202)
                          +..+++..+.++..|++.||..||+.. ...|+||||||.||+++.+|.+||+|||+++.+....+.  ....+||
T Consensus       114 ~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~tf--A~S~VGT  191 (375)
T KOG0591|consen  114 FKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSKTTF--AHSLVGT  191 (375)
T ss_pred             HHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhHhcchhHH--HHhhcCC
Confidence                446999999999999999999999833 134899999999999999999999999999987655443  3457899


Q ss_pred             CcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       147 ~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |.||+||.+...+|+.++||||+||++|||+.-++||.+++
T Consensus       192 PyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n  232 (375)
T KOG0591|consen  192 PYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDN  232 (375)
T ss_pred             CcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCccccc
Confidence            99999999999999999999999999999999999998874

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-35  Score=240.25  Aligned_cols=181  Identities=20%  Similarity=0.245  Sum_probs=154.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||-|+....++.||.|.....   .+.+...+..|..++....|+|++.      .++..+++++|+++|+|.++.....
T Consensus       289 vy~A~~~~~~~~VaiK~m~l~---~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym~ggsLTDvVt~~~  365 (550)
T KOG0578|consen  289 VYVARKISTKQEVAIKRMDLR---KQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYMEGGSLTDVVTKTR  365 (550)
T ss_pred             eeeeeeccCCceEEEEEEEec---cCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeecCCCchhhhhhccc
Confidence            677888888888887654332   2222334667777788888998773      4577899999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++.++..++++++.||+|||.   ++|||||||.+|||++.+|.+||+|||++..+......  .....|||.|||||+
T Consensus       366 ~~E~qIA~Icre~l~aL~fLH~---~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~K--R~TmVGTPYWMAPEV  440 (550)
T KOG0578|consen  366 MTEGQIAAICREILQGLKFLHA---RGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSK--RSTMVGTPYWMAPEV  440 (550)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHh---cceeeeccccceeEeccCCcEEEeeeeeeeccccccCc--cccccCCCCccchhh
Confidence            9999999999999999999999   99999999999999999999999999999877655432  344678999999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      .....|++++||||||++.+||+.|++||-.+.+-
T Consensus       441 vtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~Pl  475 (550)
T KOG0578|consen  441 VTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPL  475 (550)
T ss_pred             hhhcccCccccchhhhhHHHHHhcCCCCccCCChH
Confidence            99999999999999999999999999999876554

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.9e-36  Score=237.76  Aligned_cols=182  Identities=21%  Similarity=0.303  Sum_probs=148.2

Q ss_pred             CccccCCCcceeehhhhchhhhhcc----CCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            2 EKPRNRGSTRFITRTIDKSLDAMEM----DKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         2 ~k~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      -+|-.+.+++.||.|+-.+......    .+....+.|..++...+||+++.      .....+.++|+++||.|++..-
T Consensus       189 kla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~YmVlE~v~GGeLfd~vv  268 (475)
T KOG0615|consen  189 KLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSSYMVLEYVEGGELFDKVV  268 (475)
T ss_pred             EEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCceEEEEEEecCccHHHHHH
Confidence            3566788889999888655544332    23334568888999999998874      4445578999999999988775


Q ss_pred             c-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC---CceEEeeeecceeccccCcccccCCCCCCC
Q 044746           72 K-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN---FFPKAADFGLAKLYNREHTHITSTGRRRTP  147 (202)
Q Consensus        72 ~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~---~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~  147 (202)
                      . +.+.+...+.++.|++.|+.|||+   +||+||||||+|||+..+   ..+|++|||+|+..+...   .+.+.+|||
T Consensus       269 ~nk~l~ed~~K~~f~Qll~avkYLH~---~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~~s---fm~TlCGTp  342 (475)
T KOG0615|consen  269 ANKYLREDLGKLLFKQLLTAVKYLHS---QGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGEGS---FMKTLCGTP  342 (475)
T ss_pred             hccccccchhHHHHHHHHHHHHHHHH---cCcccccCCcceEEeccCCcceEEEecccchhhccccce---ehhhhcCCc
Confidence            4 458999999999999999999999   999999999999999866   889999999999765332   345678999


Q ss_pred             cccCCcccCCCC---CCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          148 GCEAPELWMPYS---VTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       148 ~y~aPe~~~~~~---~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      .|.|||++....   +..++|+||+||+||-+++|.+||.+...+
T Consensus       343 sYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~  387 (475)
T KOG0615|consen  343 SYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTD  387 (475)
T ss_pred             cccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCC
Confidence            999999998654   334789999999999999999999876543

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4e-35  Score=243.41  Aligned_cols=181  Identities=19%  Similarity=0.282  Sum_probs=159.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh-ccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC-KKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~-~~~   73 (202)
                      |-.|++..+++.+|+|+-.+..+.....+..+..|..++....|+|++.      .....+++.+|+++|.|+.++ .++
T Consensus        28 vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlEyv~gGELFdylv~kG  107 (786)
T KOG0588|consen   28 VRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLEYVPGGELFDYLVRKG  107 (786)
T ss_pred             ehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEEecCCchhHHHHHhhC
Confidence            3468889999999999977776777778889999999999999998874      556677899999999988776 677


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      ++++.++.+++.||+.|+.|||.   .+|+||||||+|+|++..+++||+|||+|.+...+...   .+.+|+|+|.|||
T Consensus       108 ~l~e~eaa~ff~QIi~gv~yCH~---~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gklL---eTSCGSPHYA~PE  181 (786)
T KOG0588|consen  108 PLPEREAAHFFRQILDGVSYCHA---FNICHRDLKPENLLLDVKNNIKIADFGMASLEVPGKLL---ETSCGSPHYAAPE  181 (786)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhh---hcceeccCCchhhhhhcccCEeeeccceeecccCCccc---cccCCCcccCCch
Confidence            89999999999999999999999   99999999999999999999999999999876555443   4467899999999


Q ss_pred             ccCCCCCC-chhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMPYSVT-QKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~~-~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ++++.+|+ .++||||+|++|+.|+||+.||++++
T Consensus       182 IV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdN  216 (786)
T KOG0588|consen  182 IVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDN  216 (786)
T ss_pred             hhcCCCCCCCccccchhHHHHHHHHhCCCCCCCcc
Confidence            99999886 67999999999999999999999544

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=7.3e-36  Score=228.53  Aligned_cols=189  Identities=20%  Similarity=0.214  Sum_probs=154.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      |||+|++.++++||.|.-...++....+.. -..|..++....|+|++.      ...-..++.+|++..-|..+... +
T Consensus        18 V~KCrnk~TgqIVAIKkF~Esedd~~VkKI-AlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~~dhTvL~eLe~~p~   96 (396)
T KOG0593|consen   18 VMKCRNKDTGQIVAIKKFVESEDDPVVKKI-ALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEYCDHTVLHELERYPN   96 (396)
T ss_pred             EEEeccCCcccEEEEEeeccCCccHHHHHH-HHHHHHHHHhcccchHHHHHHHHHhcceeEEEeeecchHHHHHHHhccC
Confidence            799999999999998865554443332222 346777888889998763      55556789999987766655543 3


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .++...++.++.|++.|+.|+|+   +++||||+||+|||++.++.+||+|||.|+.+..+..  ..+..+.|..|.|||
T Consensus        97 G~~~~~vk~~l~Q~l~ai~~cHk---~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd--~YTDYVATRWYRaPE  171 (396)
T KOG0593|consen   97 GVPSELVKKYLYQLLKAIHFCHK---NNCIHRDIKPENILITQNGVVKLCDFGFARTLSAPGD--NYTDYVATRWYRAPE  171 (396)
T ss_pred             CCCHHHHHHHHHHHHHHhhhhhh---cCeecccCChhheEEecCCcEEeccchhhHhhcCCcc--hhhhhhhhhhccChh
Confidence            49999999999999999999999   9999999999999999999999999999997763221  223345589999999


Q ss_pred             ccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhcccccccc
Q 044746          154 LWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFP  195 (202)
Q Consensus       154 ~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~~~~~~  195 (202)
                      ++.+ .+|+..+||||+||++.||++|.+.|.+.++-+|.+.+
T Consensus       172 LLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I  214 (396)
T KOG0593|consen  172 LLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLI  214 (396)
T ss_pred             hhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHH
Confidence            9988 68999999999999999999999999999988876644

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=1.9e-35  Score=241.93  Aligned_cols=180  Identities=21%  Similarity=0.296  Sum_probs=155.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      |||+|.+.+.++||.|...+....+. ..+.+..|..+....+|+||+.      .....+++.+|..+ .|..++. .+
T Consensus        18 VYKgrrK~t~~~vAik~i~K~gr~~k-~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte~a~g-~L~~il~~d~   95 (808)
T KOG0597|consen   18 VYKGRRKYTIQVVAIKFIDKSGRNEK-ELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTEYAVG-DLFTILEQDG   95 (808)
T ss_pred             eeecccccceeEEEEEEehhcCCchH-HHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEehhhhh-hHHHHHHhcc
Confidence            89999999999999988666544432 2445788888999999999884      45566789999887 7777775 45


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .++++.++.++.++.+||.|||+   ++|+|||+||+|||++..+.+|++|||+++.++..  ....+...|||.|||||
T Consensus        96 ~lpEe~v~~~a~~LVsaL~yLhs---~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~--t~vltsikGtPlYmAPE  170 (808)
T KOG0597|consen   96 KLPEEQVRAIAYDLVSALYYLHS---NRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTN--TSVLTSIKGTPLYMAPE  170 (808)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---cCcccccCCcceeeecCCCceeechhhhhhhcccC--ceeeeeccCcccccCHH
Confidence            79999999999999999999999   99999999999999999999999999999976543  33456678999999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +..+.+|+..+|+||+||++||+++|+|||...+
T Consensus       171 lv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~s  204 (808)
T KOG0597|consen  171 LVEEQPYDHTSDLWSLGCILYELYVGQPPFYARS  204 (808)
T ss_pred             HHcCCCccchhhHHHHHHHHHHHhcCCCCchHHH
Confidence            9999999999999999999999999999998654

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-34  Score=231.78  Aligned_cols=182  Identities=19%  Similarity=0.245  Sum_probs=145.7

Q ss_pred             CCccccCCCcceeehhhhchhhhh-c-cCCcccCCcHHHHHHhcc-cccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAM-E-MDKPIRFTSPQRMIAADN-FSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~-~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      |+++++..++..||.|+....... . ......+..|..+....+ |||++.      ......++++|..+|.|++++.
T Consensus        33 V~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~~~ivmEy~~gGdL~~~i~  112 (370)
T KOG0583|consen   33 VKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTKIYIVMEYCSGGDLFDYIV  112 (370)
T ss_pred             EEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCeEEEEEEecCCccHHHHHH
Confidence            567778778788888864443111 1 122333445666666666 888764      4444678999999999988886


Q ss_pred             c-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC-CceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           72 K-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN-FFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        72 ~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~-~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                      . +++++.+++.++.|+++|++|||+   ++|+||||||+|+|++.+ +++||+|||++....  .........+||+.|
T Consensus       113 ~~g~l~E~~ar~~F~Qlisav~y~H~---~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~--~~~~~l~t~cGsp~Y  187 (370)
T KOG0583|consen  113 NKGRLKEDEARKYFRQLISAVAYCHS---RGIVHRDLKPENILLDGNEGNLKLSDFGLSAISP--GEDGLLKTFCGSPAY  187 (370)
T ss_pred             HcCCCChHHHHHHHHHHHHHHHHHHh---CCEeeCCCCHHHEEecCCCCCEEEeccccccccC--CCCCcccCCCCCccc
Confidence            6 789999999999999999999999   999999999999999999 999999999998763  112234557889999


Q ss_pred             cCCcccCCCC-CC-chhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          150 EAPELWMPYS-VT-QKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       150 ~aPe~~~~~~-~~-~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +|||++.+.. |+ .++||||+|++||.|++|+.||++..
T Consensus       188 ~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~  227 (370)
T KOG0583|consen  188 AAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSN  227 (370)
T ss_pred             CCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCcc
Confidence            9999999877 76 77999999999999999999999855

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=2.7e-34  Score=222.34  Aligned_cols=186  Identities=20%  Similarity=0.259  Sum_probs=146.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc--------ccccceEEEEEccCCchhhhhc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG--------SEDTETYIKGFLAMGPFYLLCK-   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~~~~~~~~~~~~~l~~~~~-   71 (202)
                      ||||++..++++||.|-.+...+.. --+.--..|..++...+|+||+.        .-+..+++++|++. .|..++. 
T Consensus        92 VYRakdk~t~eIVALKr~kmekek~-GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~VMe~~Eh-DLksl~d~  169 (419)
T KOG0663|consen   92 VYRAKDKKTDEIVALKRLKMEKEKE-GFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIVMEYVEH-DLKSLMET  169 (419)
T ss_pred             EEEeccCCcceeEEeeecccccccC-CCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeeeHHHHHh-hHHHHHHh
Confidence            8999999999999976554443221 22344456677777778999863        22334456666664 3433332 


Q ss_pred             -cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           72 -KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        72 -~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                       ..+++..+++.++.|+++|++|||.   +.|+|||||++|+|+...|.+|++|||+|+.++......  +..+-|..|.
T Consensus       170 m~q~F~~~evK~L~~QlL~glk~lH~---~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~k~~--T~lVVTLWYR  244 (419)
T KOG0663|consen  170 MKQPFLPGEVKTLMLQLLRGLKHLHD---NWILHRDLKTSNLLLSHKGILKIADFGLAREYGSPLKPY--TPLVVTLWYR  244 (419)
T ss_pred             ccCCCchHHHHHHHHHHHHHHHHHhh---ceeEecccchhheeeccCCcEEecccchhhhhcCCcccC--cceEEEeeec
Confidence             2479999999999999999999999   999999999999999999999999999999887664332  3334489999


Q ss_pred             CCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhcccccc
Q 044746          151 APELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEW  193 (202)
Q Consensus       151 aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~~~~  193 (202)
                      |||++.+. .|++..|+||+||++.|+++++|-|.+.+.-+|.+
T Consensus       245 aPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~  288 (419)
T KOG0663|consen  245 APELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLD  288 (419)
T ss_pred             CHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHH
Confidence            99999875 69999999999999999999999999988877643

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2e-34  Score=227.27  Aligned_cols=179  Identities=25%  Similarity=0.295  Sum_probs=142.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc--------cceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED--------TETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++.+..++.+.|+|........   ....+..|..++...+|++|+...+        ...++++|.++|+|..++.+
T Consensus        33 V~l~~~~~~g~~~AvK~v~~~~~~---~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mEy~~~GsL~~~~~~  109 (313)
T KOG0198|consen   33 VYLATNKKTGELMAVKSVELEDSP---TSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFMEYAPGGSLSDLIKR  109 (313)
T ss_pred             EEEEEecCCCcceeeeeeecccch---hHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeeeccCCCcHHHHHHH
Confidence            455666655666666553332111   1444778888888889999986555        47799999999999999976


Q ss_pred             C--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC-CCceEEeeeecceeccc-cCcccccCCCCCCCc
Q 044746           73 N--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE-NFFPKAADFGLAKLYNR-EHTHITSTGRRRTPG  148 (202)
Q Consensus        73 ~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~-~~~~kl~dfgl~~~~~~-~~~~~~~~~~~gt~~  148 (202)
                      .  .+++..++.+.+|+++||.|||+   ++++||||||+|||++. ++.+||+|||+++.... ...........||+.
T Consensus       110 ~g~~l~E~~v~~ytr~iL~GL~ylHs---~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~  186 (313)
T KOG0198|consen  110 YGGKLPEPLVRRYTRQILEGLAYLHS---KGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPN  186 (313)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeccCcccceEEEeCCCCeEEeccCccccccccccccccccccccCCcc
Confidence            5  59999999999999999999999   99999999999999999 79999999999986553 111122334678999


Q ss_pred             ccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          149 CEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       149 y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      |||||++..+ ....++||||+||++.||+||++||..
T Consensus       187 ~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~  224 (313)
T KOG0198|consen  187 YMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSE  224 (313)
T ss_pred             ccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchh
Confidence            9999999853 333589999999999999999999987

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=6.6e-34  Score=232.19  Aligned_cols=186  Identities=22%  Similarity=0.302  Sum_probs=149.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||++++...++.+|.|+.+.....+.+....+..|..+....+|++++.      .....+++++++++|+|..++. .+
T Consensus        17 V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~   96 (363)
T cd05628          17 VRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMKKD   96 (363)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEEcCCCCCcHHHHHHhcC
Confidence            6888888888899988866544333333445666767777778887763      3445678899999999988875 45


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc----------------
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH----------------  137 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~----------------  137 (202)
                      .+++..++.++.|++.||+|||+   ++|+||||||+|||++.++.++|+|||+++........                
T Consensus        97 ~l~~~~~~~~~~qi~~aL~~lH~---~givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~  173 (363)
T cd05628          97 TLTEEETQFYIAETVLAIDSIHQ---LGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTF  173 (363)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCeEecCCCHHHeEECCCCCEEEeeccCcccccccccccccccccccccccccc
Confidence            69999999999999999999999   99999999999999999999999999998754321100                


Q ss_pred             -----------------cccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          138 -----------------ITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       138 -----------------~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                                       .......||+.|+|||++.+..++.++|+||+||++|||++|+.||.+..+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~~~  242 (363)
T cd05628         174 QNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQ  242 (363)
T ss_pred             cccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCCCHH
Confidence                             0012346899999999999889999999999999999999999999865543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.2e-33  Score=221.38  Aligned_cols=188  Identities=17%  Similarity=0.176  Sum_probs=162.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccc------cccccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSN------LVGSEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||.++.++++.+.|.||..+.......+..+.+.|.-++...+||=      .+....+.+++++|++||.|..+.++. 
T Consensus        93 VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~meyCpGGdL~~LrqkQp  172 (459)
T KOG0610|consen   93 VYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVMEYCPGGDLHSLRQKQP  172 (459)
T ss_pred             EEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEecCCCccHHHHHhhCC
Confidence            7999999999999999988888788888999999999999999993      346778889999999999987777554 


Q ss_pred             --CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceecccc-----------------
Q 044746           74 --ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE-----------------  134 (202)
Q Consensus        74 --~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~-----------------  134 (202)
                        .+++..++.++.+++.||+|||-   .|||+|||||+|||+..+|++.|+||.|+......                 
T Consensus       173 ~~~fse~~aRFYaAEvl~ALEYLHm---lGivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~  249 (459)
T KOG0610|consen  173 GKRFSESAARFYAAEVLLALEYLHM---LGIVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPS  249 (459)
T ss_pred             CCccchhhHHHHHHHHHHHHHHHHh---hceeeccCCcceeEEecCCcEEeeeccccccCCCCCeeeccCCCCCCCCCcc
Confidence              59999999999999999999999   99999999999999999999999999998643100                 


Q ss_pred             ---------------C-c---------------------ccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHH
Q 044746          135 ---------------H-T---------------------HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV  177 (202)
Q Consensus       135 ---------------~-~---------------------~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~  177 (202)
                                     . .                     ...+...+||-.|+|||++.+...+.++|+|+||+++|||+
T Consensus       250 ~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWtfGIflYEmL  329 (459)
T KOG0610|consen  250 CRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWWTFGIFLYEML  329 (459)
T ss_pred             cccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCCchhhHHHHHHHHHHHH
Confidence                           0 0                     01122357889999999999999999999999999999999


Q ss_pred             cCCCCCcchhcccc
Q 044746          178 GRRRNLEKEISEGQ  191 (202)
Q Consensus       178 ~g~~p~~~~~~~~~  191 (202)
                      .|+-||.+.+.++.
T Consensus       330 yG~TPFKG~~~~~T  343 (459)
T KOG0610|consen  330 YGTTPFKGSNNKET  343 (459)
T ss_pred             hCCCCcCCCCchhh
Confidence            99999999887654

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2e-33  Score=224.41  Aligned_cols=184  Identities=22%  Similarity=0.257  Sum_probs=153.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||+|+.+-.+.+||.|+. .++....+ ...+..|.......+|||++.      .+...++++-+|.+|++.++++.  
T Consensus        42 V~~A~c~p~~e~VAIK~i-nLEkc~~~-ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmpfMa~GS~ldIik~~~  119 (516)
T KOG0582|consen   42 VYLARCIPTNEVVAIKII-NLEKCNND-LDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMPFMAGGSLLDIIKTYY  119 (516)
T ss_pred             eeeeeecccCCEEEEEEe-ehhhhhhh-HHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeehhhcCCcHHHHHHHHc
Confidence            799999999999998875 33344333 566788888888999999985      45667899999999999988854  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc-ccc-CCCCCCCcc
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-ITS-TGRRRTPGC  149 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~-~~~-~~~~gt~~y  149 (202)
                       ..+++..+..+.+++++||.|||.   +|.||||+|+.|||++.+|.+||+|||.+..+...... ... ....||++|
T Consensus       120 ~~Gl~E~~Ia~iLre~LkaL~YLH~---~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~w  196 (516)
T KOG0582|consen  120 PDGLEEASIATILREVLKALDYLHQ---NGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCW  196 (516)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHh---cCceecccccccEEEcCCCcEEEcCceeeeeecccCceeeEeeccccCcccc
Confidence             348999999999999999999999   99999999999999999999999999988765433211 112 456889999


Q ss_pred             cCCcccCC--CCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          150 EAPELWMP--YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       150 ~aPe~~~~--~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      ||||+++.  ..|+.|+||||||++..|+.+|..||....+.
T Consensus       197 mAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPm  238 (516)
T KOG0582|consen  197 MAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPM  238 (516)
T ss_pred             cChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChH
Confidence            99999653  57999999999999999999999999887754

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=4.3e-33  Score=209.75  Aligned_cols=184  Identities=21%  Similarity=0.267  Sum_probs=147.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc------cccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV------GSEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||||++..+++.||.|--+.. +........-..|...+...+|+|++      +..+...++.+|++ .+|...++.. 
T Consensus        18 Vyka~d~~t~~~VAIKKIkl~-~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEfm~-tdLe~vIkd~~   95 (318)
T KOG0659|consen   18 VYKARDTETGKRVAIKKIKLG-NAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEFMP-TDLEVVIKDKN   95 (318)
T ss_pred             EEEEEecCCCcEEEEEEeecc-ccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEEecc-ccHHHHhcccc
Confidence            799999999988886432222 22222233345677777888889876      46777789999987 4666666544 


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                       .++..+++.++.++++|++|||+   +.|+|||+||.|+|++.+|.+|++|||+++.........+..  +-|..|.||
T Consensus        96 i~l~pa~iK~y~~m~LkGl~y~H~---~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~~~--V~TRWYRAP  170 (318)
T KOG0659|consen   96 IILSPADIKSYMLMTLKGLAYCHS---KWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQTHQ--VVTRWYRAP  170 (318)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHh---hhhhcccCCccceEEcCCCcEEeecccchhccCCCCcccccc--eeeeeccCh
Confidence             48999999999999999999999   999999999999999999999999999999876554433322  348899999


Q ss_pred             cccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhcccc
Q 044746          153 ELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQ  191 (202)
Q Consensus       153 e~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~~  191 (202)
                      |++.|. .|+..+|+||.||++.||+.|.|-|.++++-+|
T Consensus       171 ELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQ  210 (318)
T KOG0659|consen  171 ELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQ  210 (318)
T ss_pred             HHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHH
Confidence            998874 799999999999999999999999998887665

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=1.4e-33  Score=230.82  Aligned_cols=184  Identities=17%  Similarity=0.244  Sum_probs=149.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++++..+++.+|.|+.+............+..|..+....+|++++.      .....+++++++++|+|..++....
T Consensus        59 Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~~  138 (370)
T cd05621          59 VQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMSNYD  138 (370)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEcCCCCCcHHHHHHhcC
Confidence            6888898888888888765433333333344666777778888998764      4455678899999999999998888


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      ++...+..++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||++......... ......||+.|+|||+
T Consensus       139 ~~~~~~~~~~~qil~aL~~LH~---~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~-~~~~~~gt~~Y~aPE~  214 (370)
T cd05621         139 VPEKWAKFYTAEVVLALDAIHS---MGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMV-RCDTAVGTPDYISPEV  214 (370)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEECCCCCEEEEecccceecccCCce-ecccCCCCcccCCHHH
Confidence            9999999999999999999999   99999999999999999999999999999865432211 1234568999999999


Q ss_pred             cCCC----CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          155 WMPY----SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       155 ~~~~----~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +.+.    .++.++|+||+||++|||++|++||.....
T Consensus       215 ~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~  252 (370)
T cd05621         215 LKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSL  252 (370)
T ss_pred             HhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCH
Confidence            8753    377899999999999999999999976543

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=2.4e-33  Score=225.49  Aligned_cols=182  Identities=19%  Similarity=0.272  Sum_probs=145.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.+|.|+.+............+..|..+....+|++++.      ..+..+++++++++++|...+.. +
T Consensus        11 Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   90 (323)
T cd05571          11 VILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRER   90 (323)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCCcHHHHHHHcC
Confidence            6889998888888888765433222222334555666777778887653      44556789999999999877754 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++......  .......||+.|+|||
T Consensus        91 ~~~~~~~~~~~~qi~~~L~~lH~---~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~--~~~~~~~gt~~y~aPE  165 (323)
T cd05571          91 VFSEDRARFYGAEIVSALGYLHS---CDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDG--ATMKTFCGTPEYLAPE  165 (323)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCC--CcccceecCccccChh
Confidence            68999999999999999999999   999999999999999999999999999987432211  1123346899999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ++.+..++.++|+||+||+++||++|+.||....
T Consensus       166 ~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~  199 (323)
T cd05571         166 VLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD  199 (323)
T ss_pred             hhcCCCCCccccCcccchhhhhhhcCCCCCCCCC
Confidence            9998899999999999999999999999997644

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=4.4e-33  Score=227.99  Aligned_cols=184  Identities=18%  Similarity=0.251  Sum_probs=148.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++++..+++.+|.|+..............+..|..+....+|++++.      .+....++++++++|+|..++....
T Consensus        59 Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~~~~~~  138 (371)
T cd05622          59 VQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYD  138 (371)
T ss_pred             EEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHHhcC
Confidence            6888998888888888765433332223334556666777788888763      4455678999999999999998888


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      ++...+..++.|++.||+|||+   ++|+||||||+||+++.++.++|+|||++......... ......||+.|+|||+
T Consensus       139 ~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~-~~~~~~gt~~y~aPE~  214 (371)
T cd05622         139 VPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMV-RCDTAVGTPDYISPEV  214 (371)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---CCEEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCCcc-cccCcccCccccCHHH
Confidence            9999999999999999999999   99999999999999999999999999999865432211 1234568999999999


Q ss_pred             cCCC----CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          155 WMPY----SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       155 ~~~~----~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +...    .++.++|+||+||++|||++|++||.....
T Consensus       215 l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~  252 (371)
T cd05622         215 LKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL  252 (371)
T ss_pred             HhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCH
Confidence            8753    378899999999999999999999986543

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.2e-33  Score=222.51  Aligned_cols=182  Identities=21%  Similarity=0.291  Sum_probs=146.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||++++..+++.+|.|+.+............+..|..+....+|++++.      ..+...++++++++++|..++. .+
T Consensus         9 Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~   88 (312)
T cd05585           9 VMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGELFHHLQREG   88 (312)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcHHHHHHhcC
Confidence            6889998888888887654433222233344556667777788998763      3455678899999999988774 44


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||+++.......  ......||+.|+|||
T Consensus        89 ~~~~~~~~~~~~qi~~~l~~lH~---~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE  163 (312)
T cd05585          89 RFDLSRARFYTAELLCALENLHK---FNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDD--KTNTFCGTPEYLAPE  163 (312)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHeEECCCCcEEEEECcccccCccCCC--ccccccCCcccCCHH
Confidence            69999999999999999999999   9999999999999999999999999999875322211  123356899999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ++.+..++.++|+||+||+++||++|++||....
T Consensus       164 ~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~  197 (312)
T cd05585         164 LLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDEN  197 (312)
T ss_pred             HHcCCCCCCccceechhHHHHHHHhCCCCcCCCC
Confidence            9999899999999999999999999999997643

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.98  E-value=4.7e-33  Score=228.55  Aligned_cols=185  Identities=19%  Similarity=0.288  Sum_probs=148.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++...++.+|.|+..............+..|..+....+|++++.      ..+...++++++++|+|..++.. .
T Consensus        17 Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~   96 (381)
T cd05626          17 VCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRME   96 (381)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEecCCCCcHHHHHHhcC
Confidence            7899999999999988765543333333445677777778888887763      45556789999999999888754 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc-----------------
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT-----------------  136 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~-----------------  136 (202)
                      .+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+++.......                 
T Consensus        97 ~~~e~~~~~~~~qi~~aL~~LH~---~givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (381)
T cd05626          97 VFPEVLARFYIAELTLAIESVHK---MGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEP  173 (381)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCcHHHEEECCCCCEEEeeCcCCcccccccccccccccccccccccCc
Confidence            58999999999999999999999   9999999999999999999999999999753211000                 


Q ss_pred             ----------------------------ccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          137 ----------------------------HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       137 ----------------------------~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                                                  ........||+.|+|||++.+..++.++||||+||++|||++|++||....+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~  253 (381)
T cd05626         174 SDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTP  253 (381)
T ss_pred             ccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcCCCH
Confidence                                        0001234689999999999988899999999999999999999999976554

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=4.2e-33  Score=227.33  Aligned_cols=185  Identities=20%  Similarity=0.302  Sum_probs=148.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++...++.||.|+.+............+..|..+....+|++++.      .+...+++++++++|+|..++.. .
T Consensus        17 V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~   96 (364)
T cd05599          17 VRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIMEYLPGGDMMTLLMKKD   96 (364)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEECCCCCcHHHHHHHHcC
Confidence            6889998888888888765543333333445666777778888888763      45556788999999999888754 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc---------------
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI---------------  138 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~---------------  138 (202)
                      .+++..+..++.|++.||+|||+   .+++||||||+|||++.++.++|+|||+++.........               
T Consensus        97 ~l~~~~~~~~~~qi~~aL~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (364)
T cd05599          97 TFTEEETRFYIAETILAIDSIHK---LGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLD  173 (364)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEeecccceeccccccccccccccccccccccc
Confidence            68999999999999999999999   999999999999999999999999999987543211000               


Q ss_pred             ---------------------ccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          139 ---------------------TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       139 ---------------------~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                                           ......||+.|+|||++....++.++|+||+||+++||++|++||....+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~~  244 (364)
T cd05599         174 FISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDNP  244 (364)
T ss_pred             cccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCCH
Confidence                                 01124589999999999988999999999999999999999999986554

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.98  E-value=8.8e-33  Score=222.74  Aligned_cols=183  Identities=20%  Similarity=0.289  Sum_probs=146.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++...++.+|.|+..............+..|.......+|++++.      ..+..+++++++++++|...+.. .
T Consensus        11 Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~   90 (328)
T cd05593          11 VILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGELFFHLSRER   90 (328)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCCCHHHHHHhcC
Confidence            6889998888888888765433222233344556667777788887753      34556788999999999877754 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.++..++.|++.||.|||+   ++|+||||||+||+++.++.+||+|||+++.......  ......||+.|+|||
T Consensus        91 ~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE  165 (328)
T cd05593          91 VFSEDRTRFYGAEIVSALDYLHS---GKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAA--TMKTFCGTPEYLAPE  165 (328)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCeEecccCHHHeEECCCCcEEEecCcCCccCCCccc--ccccccCCcCccChh
Confidence            69999999999999999999999   9999999999999999999999999999875322111  123356899999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..++.++|+||+||++|+|++|+.||.....
T Consensus       166 ~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~  200 (328)
T cd05593         166 VLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH  200 (328)
T ss_pred             hhcCCCCCccCCccccchHHHHHhhCCCCCCCCCH
Confidence            99988899999999999999999999999976543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.98  E-value=1.5e-32  Score=220.96  Aligned_cols=183  Identities=19%  Similarity=0.282  Sum_probs=145.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..++..+|.|+.+............+..|..+....+|++++.      ..+..+++++++++++|..++.. .
T Consensus        11 Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~   90 (323)
T cd05595          11 VILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRER   90 (323)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCCcHHHHHHHcC
Confidence            6888888888888887755433222222334555667777788887763      33456688999999999877754 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||+++.......  ......||+.|+|||
T Consensus        91 ~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE  165 (323)
T cd05595          91 VFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA--TMKTFCGTPEYLAPE  165 (323)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEEcCCCCEEecccHHhccccCCCC--ccccccCCcCcCCcc
Confidence            68999999999999999999999   9999999999999999999999999999874322111  123346799999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..++.++|+||+||++|||++|+.||.....
T Consensus       166 ~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~  200 (323)
T cd05595         166 VLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH  200 (323)
T ss_pred             cccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCH
Confidence            99988999999999999999999999999976543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.98  E-value=4.4e-33  Score=228.73  Aligned_cols=185  Identities=19%  Similarity=0.305  Sum_probs=147.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.+|.|+..............+..|..+....+|++++.      ......++++++++|+|..++.. +
T Consensus        17 Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~   96 (382)
T cd05625          17 VCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMG   96 (382)
T ss_pred             EEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHhcC
Confidence            7899999899988888755443322333445667777777888887763      44556789999999999888754 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccC------------------
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH------------------  135 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~------------------  135 (202)
                      .+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.++|+|||++.......                  
T Consensus        97 ~~~e~~~~~~~~qi~~al~~lH~---~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~  173 (382)
T cd05625          97 IFPEDLARFYIAELTCAVESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDF  173 (382)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEEeECCCCccccccccccccccccccccccccc
Confidence            68999999999999999999999   999999999999999999999999999975321000                  


Q ss_pred             ---------------------------cccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          136 ---------------------------THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       136 ---------------------------~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                                                 .........||+.|+|||++.+..++.++|+||+||++|||++|++||....+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~  253 (382)
T cd05625         174 SNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQTP  253 (382)
T ss_pred             cccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCCCCCH
Confidence                                       00001224689999999999988999999999999999999999999986554

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=1.1e-32  Score=218.44  Aligned_cols=180  Identities=18%  Similarity=0.265  Sum_probs=146.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.+|.|+..............+..|.......+|++++.      ......++++++++++|..++.. +
T Consensus        17 Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~   96 (291)
T cd05612          17 VHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLMEYVPGGELFSYLRNSG   96 (291)
T ss_pred             EEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEeCCCCCCHHHHHHHcC
Confidence            6888988888888887754433222233344666777778888898763      34556788999999999888754 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||+++.....     .....|++.|+|||
T Consensus        97 ~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE  168 (291)
T cd05612          97 RFSNSTGLFYASEIVCALEYLHS---KEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDR-----TWTLCGTPEYLAPE  168 (291)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEEEecCcchhccCC-----cccccCChhhcCHH
Confidence            68999999999999999999999   99999999999999999999999999998765322     12345799999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..++.++||||+||++|+|++|+.||.....
T Consensus       169 ~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~  203 (291)
T cd05612         169 VIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNP  203 (291)
T ss_pred             HHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            99988899999999999999999999999976543

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.98  E-value=8.6e-33  Score=226.20  Aligned_cols=184  Identities=17%  Similarity=0.245  Sum_probs=148.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++++...+..+|.|+.+............+..|..+....+|++++.      ......++++++++|+|..++....
T Consensus        59 Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~~  138 (370)
T cd05596          59 VQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYMVMEYMPGGDLVNLMSNYD  138 (370)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEcCCCCCcHHHHHHhcC
Confidence            6888888888888887765433322223334556777778888888763      3445678999999999999998888


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      ++...+..++.|++.||.|||+   ++|+||||||+|||++.++.++|+|||++......... ......||+.|+|||+
T Consensus       139 l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~-~~~~~~gt~~y~aPE~  214 (370)
T cd05596         139 IPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMV-RCDTAVGTPDYISPEV  214 (370)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCcc-cCCCCCCCcCeECHHH
Confidence            9999999999999999999999   99999999999999999999999999999865432211 1233568999999999


Q ss_pred             cCCC----CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          155 WMPY----SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       155 ~~~~----~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +...    .++.++|+||+||++|||++|++||.....
T Consensus       215 ~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~  252 (370)
T cd05596         215 LKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL  252 (370)
T ss_pred             hccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCH
Confidence            8653    478899999999999999999999987544

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.98  E-value=1.4e-32  Score=220.53  Aligned_cols=183  Identities=21%  Similarity=0.252  Sum_probs=142.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHH-HHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQ-RMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++.+.++.||.|+.+............+..+. ......+|++++.      .++...++++++++++|..++.. 
T Consensus        11 Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~gg~L~~~~~~~   90 (316)
T cd05592          11 VMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNGGDLMFHIQSS   90 (316)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCCCcHHHHHHHc
Confidence            789999888888888876543322222222222333 3333457777653      44556789999999999887744 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..++...+..++.|++.||.|||+   ++|+||||||+||+++.++.++|+|||+++......  .......||+.|+||
T Consensus        91 ~~~~~~~~~~~~~qi~~al~~LH~---~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aP  165 (316)
T cd05592          91 GRFDEARARFYAAEIICGLQFLHK---KGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGE--GKASTFCGTPDYIAP  165 (316)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCC--CccccccCCccccCH
Confidence            569999999999999999999999   999999999999999999999999999997543222  122345679999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.+..++.++|+||+||+++||++|+.||.+...
T Consensus       166 E~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~  201 (316)
T cd05592         166 EILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDE  201 (316)
T ss_pred             HHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCH
Confidence            999988899999999999999999999999986543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.98  E-value=8.6e-33  Score=222.83  Aligned_cols=180  Identities=19%  Similarity=0.308  Sum_probs=149.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.+|.|+.+............+..|..+....+|++++.      ..+...++++++.+++|...+.. +
T Consensus        34 V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  113 (329)
T PTZ00263         34 VRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLLEFVVGGELFTHLRKAG  113 (329)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEEcCCCCChHHHHHHHcC
Confidence            6889998888888888765544333334455667777778888998763      44556788999999999887754 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   ++++||||||+||+++.++.+||+|||+++......     ....||+.|+|||
T Consensus       114 ~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE  185 (329)
T PTZ00263        114 RFPNDVAKFYHAELVLAFEYLHS---KDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRT-----FTLCGTPEYLAPE  185 (329)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHEEECCCCCEEEeeccCceEcCCCc-----ceecCChhhcCHH
Confidence            68999999999999999999999   999999999999999999999999999998654322     2346799999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..++.++|+||+||++|||++|+.||.+..+
T Consensus       186 ~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~  220 (329)
T PTZ00263        186 VIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTP  220 (329)
T ss_pred             HHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCH
Confidence            99988899999999999999999999999976543

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.98  E-value=3.3e-33  Score=228.93  Aligned_cols=186  Identities=20%  Similarity=0.312  Sum_probs=148.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++...++.+|.|+..............+..|..++...+|++++.      .++...++++++++|+|..++.. +
T Consensus        17 V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~~~   96 (376)
T cd05598          17 VCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRLG   96 (376)
T ss_pred             EEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEeCCCCCcHHHHHHhcC
Confidence            7889998889999988765543333333445667777778888887763      45567789999999999988755 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccC------------------
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH------------------  135 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~------------------  135 (202)
                      .++...+..++.|++.||+|||+   ++|+||||||+||+++.++.++|+|||++.......                  
T Consensus        97 ~~~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~  173 (376)
T cd05598          97 IFEEDLARFYIAELTCAIESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEP  173 (376)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHEEECCCCCEEEEeCCCCccccccccccccccccccccccccc
Confidence            58899999999999999999999   999999999999999999999999999975321000                  


Q ss_pred             -----------------------cccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          136 -----------------------THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       136 -----------------------~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                                             .........||+.|+|||++.+..++.++||||+||++|||++|+.||....+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~  250 (376)
T cd05598         174 SEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADTPA  250 (376)
T ss_pred             cccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCCCCHH
Confidence                                   000112346899999999999989999999999999999999999999876543

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=4.2e-33  Score=228.45  Aligned_cols=185  Identities=21%  Similarity=0.316  Sum_probs=146.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++...++.+|.|+.........+....+..|..+....+|++++.      .....+++++++++|+|..++.. .
T Consensus        17 Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~   96 (377)
T cd05629          17 VRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIMEFLPGGDLMTMLIKYD   96 (377)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEEeCCCCCcHHHHHHhcC
Confidence            6888888888888888755433322333345666777777788888763      44567789999999999887754 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc-------------c---
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT-------------H---  137 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~-------------~---  137 (202)
                      .+++..++.++.|++.||+|||+   .+|+||||||+||+++.++.++|+|||+++.......             .   
T Consensus        97 ~~~~~~~~~~~~ql~~aL~~LH~---~givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~  173 (377)
T cd05629          97 TFSEDVTRFYMAECVLAIEAVHK---LGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRI  173 (377)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEECCCCCEEEeeccccccccccccccccccccccccccccc
Confidence            68999999999999999999999   9999999999999999999999999999863211000             0   


Q ss_pred             -----------------------------cccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          138 -----------------------------ITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       138 -----------------------------~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                                                   .......||+.|+|||++.+..++.++|+||+||+++||++|++||....+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~  253 (377)
T cd05629         174 DNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSENS  253 (377)
T ss_pred             ccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCCCCH
Confidence                                         000124589999999999988899999999999999999999999976554

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=7.6e-33  Score=223.34  Aligned_cols=180  Identities=18%  Similarity=0.238  Sum_probs=147.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.||.|+.+............+..|.......+|++++.      .+...+++++++++++|..++.. .
T Consensus        17 Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~   96 (333)
T cd05600          17 VFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAMEYVPGGDFRTLLNNLG   96 (333)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEeCCCCCCHHHHHHHcC
Confidence            6889998888888888765443332233344566666777777887763      44556788999999999998854 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||++.....     ......||+.|+|||
T Consensus        97 ~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~-----~~~~~~gt~~y~aPE  168 (333)
T cd05600          97 VLSEDHARFYMAEMFEAVDALHE---LGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVT-----YANSVVGSPDYMAPE  168 (333)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCCEEEEeCcCCccccc-----ccCCcccCccccChh
Confidence            68999999999999999999999   9999999999999999999999999999975433     223456799999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..++.++||||+||++|||++|++||.....
T Consensus       169 ~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~  203 (333)
T cd05600         169 VLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTP  203 (333)
T ss_pred             HhcCCCCCCccceecchHHHhhhhhCCCCCCCCCH
Confidence            99988999999999999999999999999976554

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.98  E-value=4.5e-32  Score=214.38  Aligned_cols=181  Identities=19%  Similarity=0.209  Sum_probs=143.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc---
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK---   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~---   71 (202)
                      ||++++..+++.+|.|...............+..|..+....+|++++.      ..+...++++++.+|+|.....   
T Consensus        16 V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~   95 (285)
T cd05631          16 VCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMG   95 (285)
T ss_pred             EEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEecCCCcHHHHHHhhC
Confidence            6788888778888877543322222222234556667777778887653      4445678899999999976653   


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                      ...+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++........   .....||+.|+|
T Consensus        96 ~~~~~~~~~~~~~~qi~~~l~~lH~---~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~---~~~~~g~~~y~a  169 (285)
T cd05631          96 NPGFDEQRAIFYAAELCCGLEDLQR---ERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGET---VRGRVGTVGYMA  169 (285)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCe---ecCCCCCCCccC
Confidence            2358999999999999999999999   9999999999999999999999999999986533221   233467999999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ||++.+..++.++||||+||++|||++|+.||....
T Consensus       170 PE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~  205 (285)
T cd05631         170 PEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRK  205 (285)
T ss_pred             HhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCC
Confidence            999999899999999999999999999999998644

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.98  E-value=5.1e-33  Score=226.68  Aligned_cols=186  Identities=22%  Similarity=0.318  Sum_probs=149.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||++++...++.+|.|+.+.......+....+..|..+....+|++++.      .....+++++++++|+|..++. .+
T Consensus        17 V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~   96 (360)
T cd05627          17 VRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKKD   96 (360)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCCccHHHHHHhcC
Confidence            6888888888888888765544333444455666766677778887653      4456678999999999988875 45


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc----------------
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH----------------  137 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~----------------  137 (202)
                      .+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||++.........                
T Consensus        97 ~l~~~~~~~~~~qi~~~L~~lH~---~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (360)
T cd05627          97 TLSEEATQFYIAETVLAIDAIHQ---LGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSF  173 (360)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCeEccCCCHHHEEECCCCCEEEeeccCCcccccccccccccccccCCcccccc
Confidence            69999999999999999999999   99999999999999999999999999998744211100                


Q ss_pred             -----------------cccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          138 -----------------ITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       138 -----------------~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                                       .......||+.|+|||++.+..++.++|+||+||++|||++|++||....+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~~~  242 (360)
T cd05627         174 QNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQ  242 (360)
T ss_pred             cccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCCCHH
Confidence                             0012346899999999999989999999999999999999999999876543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.98  E-value=3.3e-32  Score=212.42  Aligned_cols=184  Identities=21%  Similarity=0.269  Sum_probs=141.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccc-ccc------cc------ccceEEEEEccCCchh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSN-LVG------SE------DTETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~------~~------~~~~~~~~~~~~~~l~   67 (202)
                      ||||+...++++||.|..+-..+. .-.+.--..|..++...+|+| ++.      ..      +...++.++.+ ..|.
T Consensus        27 Vykar~~~~g~~VALKkirl~~~~-EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~l~lvfe~~d-~DL~  104 (323)
T KOG0594|consen   27 VYKARSKRTGKFVALKKIRLEFEE-EGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGKLYLVFEFLD-RDLK  104 (323)
T ss_pred             EEEEEEecCCCEEEEEEEeccccc-cCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccceEEEEEEeec-ccHH
Confidence            799999999999997764433222 123444567777778888887 542      11      13334555554 3444


Q ss_pred             hhhcc-----CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCC
Q 044746           68 LLCKK-----NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTG  142 (202)
Q Consensus        68 ~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~  142 (202)
                      .++..     ..++...++.++.||+.||+|||+   ++|+||||||+|||++.+|.+||+|||+|+...-+...  .+.
T Consensus       105 ~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~---~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~~~--yt~  179 (323)
T KOG0594|consen  105 KYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHS---HGILHRDLKPQNLLISSSGVLKLADFGLARAFSIPMRT--YTP  179 (323)
T ss_pred             HHHHhccccccCCCHHHHHHHHHHHHHHHHHHHh---CCeecccCCcceEEECCCCcEeeeccchHHHhcCCccc--ccc
Confidence            44432     347778999999999999999999   99999999999999999999999999999965533322  344


Q ss_pred             CCCCCcccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhcccc
Q 044746          143 RRRTPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQ  191 (202)
Q Consensus       143 ~~gt~~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~~  191 (202)
                      ..+|..|.|||++.+. .|++.+||||+||+++||+++++-|.+.++.+|
T Consensus       180 evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~q  229 (323)
T KOG0594|consen  180 EVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQ  229 (323)
T ss_pred             cEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHH
Confidence            5668999999999886 799999999999999999999999998887543

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.97  E-value=2.9e-32  Score=219.28  Aligned_cols=183  Identities=20%  Similarity=0.244  Sum_probs=142.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccc-cc------cccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSN-LV------GSEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i------~~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++.+.++.+|.|+.+............+..|.......++++ ++      ...+..+++++++++++|...+.. 
T Consensus        16 Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~~~   95 (324)
T cd05587          16 VMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV   95 (324)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEEcCCCCCcHHHHHHHc
Confidence            6889998888888888765433222222334445555555555543 32      234556788999999999877744 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||++........  ......||+.|+||
T Consensus        96 ~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aP  170 (324)
T cd05587          96 GKFKEPHAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGK--TTRTFCGTPDYIAP  170 (324)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCC--ceeeecCCccccCh
Confidence            568999999999999999999999   9999999999999999999999999999874321111  12334679999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.+..++.++|+||+||++|||++|+.||.....
T Consensus       171 E~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~  206 (324)
T cd05587         171 EIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDE  206 (324)
T ss_pred             hhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH
Confidence            999998899999999999999999999999976543

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.97  E-value=1.4e-32  Score=222.53  Aligned_cols=180  Identities=18%  Similarity=0.230  Sum_probs=143.9

Q ss_pred             CCccccCCCc-ceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGST-RFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++.+...+ ..+|.|...............+..|..+....+|++++.      ..+..+++++++.+|+|..++.. 
T Consensus        46 Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~i~~~  125 (340)
T PTZ00426         46 VILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLRRN  125 (340)
T ss_pred             EEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHHc
Confidence            5777655443 566666543333222333345667777888888998763      44556789999999999888854 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++||||||+|||++.++.++|+|||+++.....     .....||+.|+||
T Consensus       126 ~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~-----~~~~~gt~~y~aP  197 (340)
T PTZ00426        126 KRFPNDVGCFYAAQIVLIFEYLQS---LNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTR-----TYTLCGTPEYIAP  197 (340)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeEccCCCHHHEEECCCCCEEEecCCCCeecCCC-----cceecCChhhcCH
Confidence            468999999999999999999999   99999999999999999999999999999865322     1234679999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.+..++.++|+||+||++|||++|++||....+
T Consensus       198 E~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~  233 (340)
T PTZ00426        198 EILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEP  233 (340)
T ss_pred             HHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCH
Confidence            999988899999999999999999999999987554

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.97  E-value=4.1e-32  Score=218.37  Aligned_cols=183  Identities=23%  Similarity=0.290  Sum_probs=144.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHH---Hhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMI---AADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++++...++.+|.|+.+............+..|..+.   ...+|++++.      .+...+++++++++++|.....
T Consensus        15 Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~~~   94 (324)
T cd05589          15 VLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFVMEYAAGGDLMMHIH   94 (324)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEEEcCCCCCcHHHHhh
Confidence            688888888888888876543322222223333333322   3456777653      4455678999999999999888


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                      ...+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++......  .......|++.|+|
T Consensus        95 ~~~l~~~~~~~~~~qi~~al~~lH~---~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~g~~~y~a  169 (324)
T cd05589          95 TDVFSEPRAVFYAACVVLGLQYLHE---NKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFG--DRTSTFCGTPEFLA  169 (324)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHh---CCeEecCCCHHHeEECCCCcEEeCcccCCccCCCCC--CcccccccCccccC
Confidence            8889999999999999999999999   999999999999999999999999999987432211  11233567999999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ||.+.+..++.++|+||+||++|||++|+.||.....
T Consensus       170 PE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~  206 (324)
T cd05589         170 PEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDE  206 (324)
T ss_pred             HhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCH
Confidence            9999988899999999999999999999999986543

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.97  E-value=4.7e-32  Score=218.01  Aligned_cols=183  Identities=21%  Similarity=0.259  Sum_probs=142.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccc-ccc------cccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFS-NLV------GSEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i------~~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.||.|+.+............+..|.......+++ .++      ...+..+++++++++++|..++.. 
T Consensus        16 Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~Ey~~~g~L~~~i~~~   95 (323)
T cd05615          16 VMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQV   95 (323)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEcCCCCCcHHHHHHHc
Confidence            688999888888988876544322222233344454444444433 332      233456688999999999887755 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++.++..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||+++.......  ......||+.|+||
T Consensus        96 ~~l~~~~~~~i~~qi~~al~~lH~---~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aP  170 (323)
T cd05615          96 GKFKEPQAVFYAAEISVGLFFLHR---RGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGV--TTRTFCGTPDYIAP  170 (323)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEeccccccccCCCCc--cccCccCCccccCH
Confidence            569999999999999999999999   9999999999999999999999999999875322211  12334579999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.+..++.++|+||+||+++||++|++||....+
T Consensus       171 E~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~  206 (323)
T cd05615         171 EIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDE  206 (323)
T ss_pred             HHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCH
Confidence            999988899999999999999999999999987654

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.97  E-value=2.3e-32  Score=204.23  Aligned_cols=180  Identities=20%  Similarity=0.257  Sum_probs=147.2

Q ss_pred             CCccccCCCcceeehhh-hchhhhhccCCcccCCcHHHHHHhccccccc------cccccceEEEEEccCCch-hhhhcc
Q 044746            1 MEKPRNRGSTRFITRTI-DKSLDAMEMDKPIRFTSPQRMIAADNFSNLV------GSEDTETYIKGFLAMGPF-YLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~~~~~~~l-~~~~~~   72 (202)
                      |+|+.++.+++..+.|+ ....  .......++..|..++....||+|+      .+.++.+++.++++++.| +++..+
T Consensus        27 VrRc~~~~tg~~fa~kiin~~k--~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvFe~m~G~dl~~eIV~R  104 (355)
T KOG0033|consen   27 VRRCVHKTTGLEFAAKIINTKK--LSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR  104 (355)
T ss_pred             HHHHHhccchHHHHHHHhhhhh--hccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEEecccchHHHHHHHHH
Confidence            45555655555555544 3222  2233566788899999999999886      467788899999999987 455566


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC---CCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~---~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                      ..+++..+..+++||+++|.|+|+   ++|+|||+||+|+++.+   .--+||+|||++..++   ......+..|||+|
T Consensus       105 ~~ySEa~aSH~~rQiLeal~yCH~---n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~---~g~~~~G~~GtP~f  178 (355)
T KOG0033|consen  105 EFYSEADASHCIQQILEALAYCHS---NGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVN---DGEAWHGFAGTPGY  178 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh---cCceeccCChhheeeeeccCCCceeecccceEEEeC---CccccccccCCCcc
Confidence            678999999999999999999999   99999999999999964   3458999999998776   23345778899999


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ||||++...+|+..+|||+.|++|+-|+.|.+||.+++.
T Consensus       179 maPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~  217 (355)
T KOG0033|consen  179 LSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ  217 (355)
T ss_pred             cCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccH
Confidence            999999999999999999999999999999999998544

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.97  E-value=3.7e-32  Score=218.57  Aligned_cols=184  Identities=21%  Similarity=0.266  Sum_probs=140.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-cccccc------cccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLV------GSEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i------~~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.+|.|+.+............+..+....... ++++++      ...+...++++++++|+|...+.. 
T Consensus        16 Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~~~   95 (323)
T cd05616          16 VMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQV   95 (323)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEEcCCCCCCHHHHHHHc
Confidence            688999888888888875543222222222233333333333 444433      234456689999999999877744 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++.++..++.|++.||.|||+   .+++||||||+|||++.++.++|+|||+++......  .......||+.|+||
T Consensus        96 ~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~--~~~~~~~gt~~y~aP  170 (323)
T cd05616          96 GRFKEPHAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDG--VTTKTFCGTPDYIAP  170 (323)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCEEecCCCHHHeEECCCCcEEEccCCCceecCCCC--CccccCCCChhhcCH
Confidence            569999999999999999999999   999999999999999999999999999987532211  112345679999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |++.+..++.++|+||+||++|||++|+.||......
T Consensus       171 E~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~  207 (323)
T cd05616         171 EIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED  207 (323)
T ss_pred             HHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHH
Confidence            9999999999999999999999999999999866543

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.97  E-value=4.9e-32  Score=217.67  Aligned_cols=183  Identities=22%  Similarity=0.269  Sum_probs=142.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHH-Hhcccccccc------ccccceEEEEEccCCchhhhhc-c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMI-AADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~   72 (202)
                      ||++++..+++.+|.|+.+............+..+.... ...+|++++.      ..+..+++++++++++|..++. .
T Consensus        11 V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~g~L~~~i~~~   90 (320)
T cd05590          11 VMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNGGDLMFHIQKS   90 (320)
T ss_pred             EEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCCchHHHHHHHc
Confidence            688999888888888875443222222222333343333 3446887763      3445678899999999987764 4


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||+++......  .......||+.|+||
T Consensus        91 ~~l~~~~~~~~~~ql~~~L~~lH~---~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~--~~~~~~~gt~~y~aP  165 (320)
T cd05590          91 RRFDEARARFYAAEITSALMFLHD---KGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNG--KTTSTFCGTPDYIAP  165 (320)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCC--CcccccccCccccCH
Confidence            569999999999999999999999   999999999999999999999999999987532211  112335689999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.+..++.++|+||+||++|||++|+.||.....
T Consensus       166 E~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~  201 (320)
T cd05590         166 EILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENE  201 (320)
T ss_pred             HHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH
Confidence            999988899999999999999999999999976554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.1e-32  Score=219.92  Aligned_cols=183  Identities=20%  Similarity=0.306  Sum_probs=142.1

Q ss_pred             CCccccCCCcceeehhh-hchhhhhccCCcccCCcHHHHHHhcccccccc------ccc-cceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTI-DKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SED-TETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~-~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||+|+....+..||.|- .++....  +....+.+-..+.....|+|+|.      ... ...+++|+|+ .+|+++++.
T Consensus        26 V~la~~~~~~~~VAIK~MK~Kf~s~--ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fVfE~Md-~NLYqLmK~  102 (538)
T KOG0661|consen   26 VYLAKSKETGELVAIKKMKKKFYSW--EECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFVFEFMD-CNLYQLMKD  102 (538)
T ss_pred             EEEeeecCCCceeeHHHHHhhhccH--HHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeeeHHhhh-hhHHHHHhh
Confidence            78999988888888654 3333322  22233333333344444888763      333 6677788776 578887765


Q ss_pred             C--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           73 N--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        73 ~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      +  .+++..++.|+.||+.||+|+|.   +|+.|||+||+|||+.....+||+|||+|+.+......   +..+.|..|+
T Consensus       103 R~r~fse~~irnim~QilqGL~hiHk---~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~SkpPY---TeYVSTRWYR  176 (538)
T KOG0661|consen  103 RNRLFSESDIRNIMYQILQGLAHIHK---HGFFHRDLKPENILISGNDVIKIADFGLAREVRSKPPY---TEYVSTRWYR  176 (538)
T ss_pred             cCCcCCHHHHHHHHHHHHHHHHHHHh---cCcccccCChhheEecccceeEecccccccccccCCCc---chhhhccccc
Confidence            4  49999999999999999999999   99999999999999999999999999999976543332   3345599999


Q ss_pred             CCcccC-CCCCCchhhHHHHHHHHHHHHcCCCCCcchhccccc
Q 044746          151 APELWM-PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQE  192 (202)
Q Consensus       151 aPe~~~-~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~~~  192 (202)
                      |||++. ..-|+.+.|+||+||+++|+.+-++.|.+.++-+|.
T Consensus       177 APEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi  219 (538)
T KOG0661|consen  177 APEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQI  219 (538)
T ss_pred             chHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHH
Confidence            999876 457999999999999999999999999998887763

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.97  E-value=1.1e-31  Score=211.66  Aligned_cols=182  Identities=19%  Similarity=0.232  Sum_probs=144.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh----
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC----   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~----   70 (202)
                      ||++.+...++.++.|...............+..|..+....+|++++.      ......++++++++++|...+    
T Consensus         9 Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~   88 (280)
T cd05608           9 VSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDLRYHIYNVD   88 (280)
T ss_pred             EEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCHHHHHHhcc
Confidence            6888888777777776654433222223344556777777888887763      334566889999999997665    


Q ss_pred             -ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           71 -KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        71 -~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                       ....+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||++........  ......||+.|
T Consensus        89 ~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~--~~~~~~g~~~y  163 (280)
T cd05608          89 EENPGFPEPRACFYTAQIISGLEHLHQ---RRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQS--KTKGYAGTPGF  163 (280)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCc--cccccCCCcCc
Confidence             23458999999999999999999999   9999999999999999999999999999976543222  12334679999


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +|||.+.+..++.++|+||+|+++|||++|+.||....
T Consensus       164 ~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~  201 (280)
T cd05608         164 MAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARG  201 (280)
T ss_pred             cCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999999999999999999999997643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=3.2e-32  Score=221.52  Aligned_cols=158  Identities=25%  Similarity=0.426  Sum_probs=135.4

Q ss_pred             cccCCcHHHHHHhcccccccc-----cc-ccceEEEEEccCCchhhhhcc---CCCCHHHHHHHHHHHHHHHHHHHhCCC
Q 044746           29 PIRFTSPQRMIAADNFSNLVG-----SE-DTETYIKGFLAMGPFYLLCKK---NILGFGQLREIEVSTSKGIAYLHEECR   99 (202)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~i~-----~~-~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~~   99 (202)
                      ...|..|..++...+|++++.     .. +-..++++++..|+|.++++.   ..+...+.+.++.|||+|++||.+   
T Consensus       245 ~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes---  321 (468)
T KOG0197|consen  245 PEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLES---  321 (468)
T ss_pred             hhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHh---
Confidence            345778999999999998873     22 235799999999999999976   469999999999999999999999   


Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-  178 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-  178 (202)
                      +++|||||...|||++.+..+|++||||++...++.+... .+..-+..|.|||.+..+.|+.++||||||++|||++| 
T Consensus       322 ~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~-~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~  400 (468)
T KOG0197|consen  322 KNYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTAS-EGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTY  400 (468)
T ss_pred             CCccchhhhhhheeeccCceEEEcccccccccCCCceeec-CCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhcc
Confidence            9999999999999999999999999999996655544333 23333778999999999999999999999999999998 


Q ss_pred             CCCCCcchhccc
Q 044746          179 RRRNLEKEISEG  190 (202)
Q Consensus       179 g~~p~~~~~~~~  190 (202)
                      |+.|+.+....+
T Consensus       401 G~~py~~msn~e  412 (468)
T KOG0197|consen  401 GRVPYPGMSNEE  412 (468)
T ss_pred             CCCCCCCCCHHH
Confidence            999988776544

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.8e-32  Score=222.19  Aligned_cols=185  Identities=19%  Similarity=0.300  Sum_probs=151.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.+|.|+.+............+..|.......+|++++.      .+...+++++++.+++|..++.. +
T Consensus        17 Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   96 (350)
T cd05573          17 VWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIRKD   96 (350)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEEcCCCCCCHHHHHHHcC
Confidence            6889998888888888765544333344455677777788888887663      45566789999999999888755 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccC------------------
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH------------------  135 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~------------------  135 (202)
                      .++...+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.......                  
T Consensus        97 ~l~~~~~~~i~~qi~~aL~~LH~---~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (350)
T cd05573          97 VFPEETARFYIAELVLALDSVHK---LGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNV  173 (350)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEeecCCCCccCcccCcccccccccccccccccc
Confidence            79999999999999999999999   999999999999999999999999999998654322                  


Q ss_pred             ---------cccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          136 ---------THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       136 ---------~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                               .........||+.|+|||++.+..++.++||||+||+++||++|+.||.....
T Consensus       174 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~  235 (350)
T cd05573         174 LVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTL  235 (350)
T ss_pred             cccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCH
Confidence                     00112335689999999999999999999999999999999999999986653

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.97  E-value=4.3e-32  Score=217.99  Aligned_cols=184  Identities=19%  Similarity=0.268  Sum_probs=142.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHH-hcccccccc------ccccceEEEEEccCCchhhhhc-c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIA-ADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~   72 (202)
                      ||++++.+.++.+|.|+.+.......+....+..|..+.. ..+|++++.      ..+..+++++++++++|...+. .
T Consensus        11 Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~   90 (321)
T cd05591          11 VMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNGGDLMFQIQRS   90 (321)
T ss_pred             EEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCCCcHHHHHHHc
Confidence            6888888888888887754432222222233334444333 346777653      3445678999999999977664 4


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||++........  ......||+.|+||
T Consensus        91 ~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aP  165 (321)
T cd05591          91 RKFDEPRSRFYAAEVTLALMFLHR---HGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGV--TTTTFCGTPDYIAP  165 (321)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEeecccceecccCCc--cccccccCccccCH
Confidence            568999999999999999999999   9999999999999999999999999999875322211  12334679999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |++.+..++.++|+||+||++|||++|+.||....++
T Consensus       166 E~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~  202 (321)
T cd05591         166 EILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNED  202 (321)
T ss_pred             HHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCHH
Confidence            9999888999999999999999999999999876543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.97  E-value=4.5e-32  Score=218.65  Aligned_cols=180  Identities=22%  Similarity=0.265  Sum_probs=142.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhc-c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCK-K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~   72 (202)
                      ||++++...++.+|.|+.+.......+....+..|..+.... +|++++.      .....+++++++++++|..++. .
T Consensus        11 V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~   90 (329)
T cd05588          11 VLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSGGDLMFHMQRQ   90 (329)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCCCCHHHHHHHc
Confidence            688888888888888876544332222233344555544443 7887764      3345678999999999987764 4


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      +.+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||+++......  .......||+.|+||
T Consensus        91 ~~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~gt~~y~aP  165 (329)
T cd05588          91 RKLPEEHARFYSAEISLALNFLHE---RGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPG--DTTSTFCGTPNYIAP  165 (329)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEECcCccccccccCC--CccccccCCccccCH
Confidence            579999999999999999999999   999999999999999999999999999987422111  112335679999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      |++.+..++.++|+||+||++|||++|+.||+.
T Consensus       166 E~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~  198 (329)
T cd05588         166 EILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  198 (329)
T ss_pred             HHHcCCCCCCccceechHHHHHHHHHCCCCccc
Confidence            999998999999999999999999999999974

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=1e-31  Score=213.15  Aligned_cols=182  Identities=20%  Similarity=0.282  Sum_probs=158.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      |-+|....+++.||.|.-++..-........+..|..+....|||+||.      ..+-..++|+|..+|.|++++.. +
T Consensus        69 Vk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivMEYaS~GeLYDYiSer~  148 (668)
T KOG0611|consen   69 VKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVMEYASGGELYDYISERG  148 (668)
T ss_pred             eeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEEecCCccHHHHHHHhc
Confidence            4467888899999998877766555556677889999999999999874      34445689999999999999954 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.+++.+++||.+|+.|+|.   ++++|||||.+|||++.++++|++|||++.++.....   ....+|+|-|.+||
T Consensus       149 ~LsErEaRhfFRQIvSAVhYCHk---nrVvHRDLKLENILLD~N~NiKIADFGLSNly~~~kf---LqTFCGSPLYASPE  222 (668)
T KOG0611|consen  149 SLSEREARHFFRQIVSAVHYCHK---NRVVHRDLKLENILLDQNNNIKIADFGLSNLYADKKF---LQTFCGSPLYASPE  222 (668)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhh---ccceecccchhheeecCCCCeeeeccchhhhhccccH---HHHhcCCcccCCcc
Confidence            69999999999999999999999   9999999999999999999999999999988766544   34567899999999


Q ss_pred             ccCCCCCC-chhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVT-QKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~-~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ...+.+|. +.+|.||+|++||-|+.|..||++.+.
T Consensus       223 IvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dh  258 (668)
T KOG0611|consen  223 IVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDH  258 (668)
T ss_pred             ccCCCCCCCCccchhhHHHHHHHHhhcccccCCchH
Confidence            99999886 679999999999999999999998654

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.97  E-value=4.5e-32  Score=218.50  Aligned_cols=182  Identities=19%  Similarity=0.215  Sum_probs=142.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHh-cccccccc------ccccceEEEEEccCCchhhhhc-c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAA-DNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~   72 (202)
                      ||++++..+++.+|.|+.+.......+....+..|..+... .+|++++.      .....+++++++++++|..++. .
T Consensus        11 V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~   90 (327)
T cd05617          11 VLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNGGDLMFHMQRQ   90 (327)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc
Confidence            68888888888888887654433222223334455444433 35776653      3344568899999999987764 4


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      +.+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||+++......  .......||+.|+||
T Consensus        91 ~~l~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aP  165 (327)
T cd05617          91 RKLPEEHARFYAAEICIALNFLHE---RGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPG--DTTSTFCGTPNYIAP  165 (327)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEeCCCCEEEeccccceeccCCC--CceecccCCcccCCH
Confidence            579999999999999999999999   999999999999999999999999999987432211  112335679999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |++.+..++.++|+||+||++|||++|+.||....
T Consensus       166 E~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~  200 (327)
T cd05617         166 EILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIIT  200 (327)
T ss_pred             HHHCCCCCCchheeehhHHHHHHHHhCCCCCCccC
Confidence            99999899999999999999999999999997543

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.97  E-value=1.1e-31  Score=215.38  Aligned_cols=183  Identities=20%  Similarity=0.253  Sum_probs=141.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHH-Hhcccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMI-AADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.+|.|+.+............+..|.... ...+|++++.      ..+...++++++++|+|..++.. 
T Consensus        11 Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~   90 (316)
T cd05619          11 VFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNGGDLMFHIQSC   90 (316)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHHc
Confidence            688999888888888765543222112222233333333 3457887653      34456689999999999888865 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++.++..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||+++......  .......||+.|+||
T Consensus        91 ~~~~~~~~~~~~~qi~~al~~LH~---~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aP  165 (316)
T cd05619          91 HKFDLPRATFYAAEIICGLQFLHS---KGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGD--AKTCTFCGTPDYIAP  165 (316)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCC--CceeeecCCccccCH
Confidence            468999999999999999999999   999999999999999999999999999987432111  112334679999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.+..++.++|+||+||++|||++|+.||.....
T Consensus       166 E~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~  201 (316)
T cd05619         166 EILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDE  201 (316)
T ss_pred             HHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCH
Confidence            999988899999999999999999999999976543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1e-32  Score=219.78  Aligned_cols=183  Identities=22%  Similarity=0.209  Sum_probs=155.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc---c---ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV---G---SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~---~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      |||+.+...++.||.|+..-.  ...+....++.|...+...+.+++.   |   .+...+.+|+++.+|++.+.++.+.
T Consensus        29 Vyk~~d~~t~k~vAiKii~Le--~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~~gGsv~~lL~~~~  106 (467)
T KOG0201|consen   29 VYKAIDNKTKKVVAIKIIDLE--EAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYCGGGSVLDLLKSGN  106 (467)
T ss_pred             eeeeeeccccceEEEEEechh--hcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHhcCcchhhhhccCC
Confidence            799999999999999885332  2223344567777788888777664   2   4556678899999999999998877


Q ss_pred             C-CHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           75 L-GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        75 ~-~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      + .+.+...+.++++.|+.|+|+   .+.||||+|+.||++..+|.+||+|||++..+.......  ....|||.|||||
T Consensus       107 ~~~E~~i~~ilre~l~~l~ylH~---~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr--~tfvGTPfwMAPE  181 (467)
T KOG0201|consen  107 ILDEFEIAVILREVLKGLDYLHS---EKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRR--KTFVGTPFWMAPE  181 (467)
T ss_pred             CCccceeeeehHHHHHHhhhhhh---cceecccccccceeEeccCcEEEEecceeeeeechhhcc--ccccccccccchh
Confidence            6 888999999999999999999   999999999999999999999999999998766544332  5578999999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      ++.+..|+.++||||||++.+||++|.||+.+..++.
T Consensus       182 VI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmr  218 (467)
T KOG0201|consen  182 VIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMR  218 (467)
T ss_pred             hhccccccchhhhhhhhHHHHHHhcCCCCCcccCcce
Confidence            9998899999999999999999999999999888753

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.97  E-value=1.6e-31  Score=215.88  Aligned_cols=182  Identities=21%  Similarity=0.282  Sum_probs=135.1

Q ss_pred             CCcccc-----CCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-cccccccc-------cccceEEEEEccCCchh
Q 044746            1 MEKPRN-----RGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVGS-------EDTETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~-------~~~~~~~~~~~~~~~l~   67 (202)
                      ||++++     ...+..||+|+.+....  ......+..|..+.... +|+|++..       .+...++++++++|+|.
T Consensus        23 Vy~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv~ey~~~g~L~  100 (338)
T cd05102          23 VVEASAFGIDKKSSCNTVAVKMLKEGAT--ASEHKALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVIVEFCKYGNLS  100 (338)
T ss_pred             EEEEEEeccCCcccchhhheeccccccc--hHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCCceEEEEecCCCCcHH
Confidence            566653     33445677666543211  11123355555555555 78887642       22346789999999998


Q ss_pred             hhhcc---------------------------------------------------------------CCCCHHHHHHHH
Q 044746           68 LLCKK---------------------------------------------------------------NILGFGQLREIE   84 (202)
Q Consensus        68 ~~~~~---------------------------------------------------------------~~~~~~~~~~~~   84 (202)
                      .++..                                                               ..+++..+..++
T Consensus       101 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  180 (338)
T cd05102         101 NFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSPLTMEDLICYS  180 (338)
T ss_pred             HHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccccccCCCCHHHHHHHH
Confidence            77743                                                               237788899999


Q ss_pred             HHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchh
Q 044746           85 VSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKC  164 (202)
Q Consensus        85 ~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~  164 (202)
                      .|++.||.|||+   ++|+||||||+||+++.++.++|+|||+++...............+++.|+|||++.+..++.++
T Consensus       181 ~qi~~aL~~LH~---~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~s  257 (338)
T cd05102         181 FQVARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQS  257 (338)
T ss_pred             HHHHHHHHHHHH---CCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHHhhcCCCCccc
Confidence            999999999999   99999999999999999999999999999865433222222233456789999999988899999


Q ss_pred             hHHHHHHHHHHHHc-CCCCCcchh
Q 044746          165 DVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       165 Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      |||||||++|||++ |..||....
T Consensus       258 DiwslG~il~el~~~g~~pf~~~~  281 (338)
T cd05102         258 DVWSFGVLLWEIFSLGASPYPGVQ  281 (338)
T ss_pred             CHHHHHHHHHHHHhCCCCCCCCCC
Confidence            99999999999997 999998644

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.97  E-value=5.7e-32  Score=217.65  Aligned_cols=183  Identities=19%  Similarity=0.289  Sum_probs=142.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCccc-CCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIR-FTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.+|.|+.............. +..+..+....+|++++.      ..+...++++++++++|..++.. 
T Consensus        11 V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~   90 (325)
T cd05602          11 VLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRE   90 (325)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCCCcHHHHHHhc
Confidence            6899998888888888765433222111122 222333455667887763      34456788999999999887754 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..++...+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||+++.......  ......||+.|+||
T Consensus        91 ~~~~~~~~~~~~~qi~~~L~~lH~---~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~--~~~~~~gt~~y~aP  165 (325)
T cd05602          91 RCFLEPRARFYAAEIASALGYLHS---LNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNG--TTSTFCGTPEYLAP  165 (325)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEEccCCCCcccccCCC--CcccccCCccccCH
Confidence            458899999999999999999999   9999999999999999999999999999875322111  12335689999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.+..++.++||||+||++|||++|++||.....
T Consensus       166 E~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~  201 (325)
T cd05602         166 EVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT  201 (325)
T ss_pred             HHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCH
Confidence            999998999999999999999999999999976543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.97  E-value=1.9e-32  Score=224.66  Aligned_cols=150  Identities=24%  Similarity=0.326  Sum_probs=130.7

Q ss_pred             HHHHHhcccccccccc------ccceEEEEEccCCchhhhhccC-CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCC
Q 044746           36 QRMIAADNFSNLVGSE------DTETYIKGFLAMGPFYLLCKKN-ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIK  108 (202)
Q Consensus        36 ~~~~~~~~~~~~i~~~------~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk  108 (202)
                      +..+...+|+|||...      ...+++|+|+..|.|+.+++.+ .++......+..+|+.|+.|||.   +.|||||||
T Consensus       163 IKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL~~VLka~~~itp~llv~Wsk~IA~GM~YLH~---hKIIHRDLK  239 (904)
T KOG4721|consen  163 IKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQLYEVLKAGRPITPSLLVDWSKGIAGGMNYLHL---HKIIHRDLK  239 (904)
T ss_pred             HHHHHhccCcceeeEeeeecCCceeEEeeeccccccHHHHHhccCccCHHHHHHHHHHhhhhhHHHHH---hhHhhhccC
Confidence            4456677888888533      4456899999999999999765 59999999999999999999999   999999999


Q ss_pred             CCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          109 PESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       109 ~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ..||||..+..+||+|||.++.....   .+.....||..|||||++...+.+.|+|||||||+||||+||+-||.+...
T Consensus       240 SPNiLIs~~d~VKIsDFGTS~e~~~~---STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVds  316 (904)
T KOG4721|consen  240 SPNILISYDDVVKISDFGTSKELSDK---STKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDS  316 (904)
T ss_pred             CCceEeeccceEEeccccchHhhhhh---hhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccch
Confidence            99999999999999999999865443   334567899999999999999999999999999999999999999987666


Q ss_pred             ccc
Q 044746          189 EGQ  191 (202)
Q Consensus       189 ~~~  191 (202)
                      ...
T Consensus       317 sAI  319 (904)
T KOG4721|consen  317 SAI  319 (904)
T ss_pred             hee
Confidence            543

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.97  E-value=5.5e-32  Score=217.54  Aligned_cols=182  Identities=18%  Similarity=0.280  Sum_probs=142.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccC-CcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRF-TSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.+|.|+..............+ ..+.......+|++++.      ......++++++++++|..++.. 
T Consensus        11 V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~   90 (323)
T cd05575          11 VLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNGGELFFHLQRE   90 (323)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCCCCHHHHHHhc
Confidence            68899988888888887544322222222222 23333456678888764      34456788999999999877754 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   ++++||||||+||+++.++.+||+|||+++.......  ......||+.|+||
T Consensus        91 ~~~~~~~~~~~~~qi~~~l~~lH~---~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aP  165 (323)
T cd05575          91 RSFPEPRARFYAAEIASALGYLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSK--TTSTFCGTPEYLAP  165 (323)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCC--ccccccCChhhcCh
Confidence            468999999999999999999999   9999999999999999999999999999875322111  12334679999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |++.+..++.++|+|||||++|||++|++||....
T Consensus       166 E~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~  200 (323)
T cd05575         166 EVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRD  200 (323)
T ss_pred             hhhcCCCCCccccccccchhhhhhhcCCCCCCCCC
Confidence            99999899999999999999999999999997654

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.97  E-value=2.7e-32  Score=219.48  Aligned_cols=184  Identities=19%  Similarity=0.289  Sum_probs=145.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++...+..+|.|+.+............+..|.......+|++++.      ..+..+++++++++++|..++.. .
T Consensus        11 V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~   90 (325)
T cd05594          11 VILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRER   90 (325)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCCcHHHHHHhcC
Confidence            6888888888888888765433222222334455666677778887753      34556789999999999887754 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+.  .+++||||||+||+++.++.++|+|||+++.......  ......||+.|+|||
T Consensus        91 ~l~~~~~~~~~~qi~~aL~~lH~~--~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE  166 (325)
T cd05594          91 VFSEDRARFYGAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA--TMKTFCGTPEYLAPE  166 (325)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhc--CCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCc--ccccccCCcccCCHH
Confidence            689999999999999999999962  6999999999999999999999999999875322211  122345799999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..++.++|+||+||++|||++|+.||.....
T Consensus       167 ~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~  201 (325)
T cd05594         167 VLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH  201 (325)
T ss_pred             HHccCCCCCccccccccceeeeeccCCCCCCCCCH
Confidence            99988899999999999999999999999976543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.97  E-value=6.2e-32  Score=217.01  Aligned_cols=182  Identities=18%  Similarity=0.264  Sum_probs=142.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcH-HHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSP-QRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++...++.++.|+..............+..+ ..+....+|++++.      ......++++++++++|...+.. 
T Consensus        11 Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~   90 (321)
T cd05603          11 VLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNGGELFFHLQRE   90 (321)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCCCCHHHHHHHc
Confidence            68999988888888887544322222222223333 33456678888764      33456688999999999776644 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..++...+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++.......  ......||+.|+||
T Consensus        91 ~~~~~~~~~~~~~qi~~~L~~lH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aP  165 (321)
T cd05603          91 RCFLEPRARFYAAEVASAIGYLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEE--TTSTFCGTPEYLAP  165 (321)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCC--ccccccCCcccCCH
Confidence            568999999999999999999999   9999999999999999999999999999875322111  12334679999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |.+.+..++.++|+||+||++|||++|++||....
T Consensus       166 E~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  200 (321)
T cd05603         166 EVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRD  200 (321)
T ss_pred             HHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCC
Confidence            99998889999999999999999999999997654

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.97  E-value=1.1e-31  Score=215.34  Aligned_cols=183  Identities=20%  Similarity=0.231  Sum_probs=141.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHH-Hhccccccc------cccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMI-AADNFSNLV------GSEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i------~~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++...+..+|.|+.+............+..|.... ...+|++++      ...+..+++++++.+++|..++.. 
T Consensus        11 V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~~   90 (316)
T cd05620          11 VLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNGGDLMFHIQDK   90 (316)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCCCcHHHHHHHc
Confidence            688888888888888775543222112222233333333 334677665      344566788999999999877754 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++.++..++.|++.||+|||+   ++++||||||+||+++.++.++|+|||+++......  .......||+.|+||
T Consensus        91 ~~~~~~~~~~~~~qi~~~l~~lH~---~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aP  165 (316)
T cd05620          91 GRFDLYRATFYAAEIVCGLQFLHS---KGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGD--NRASTFCGTPDYIAP  165 (316)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEeCccCCCeecccCC--CceeccCCCcCccCH
Confidence            468999999999999999999999   999999999999999999999999999987432111  112345679999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.+..++.++|+||+||+++||++|+.||.....
T Consensus       166 E~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~  201 (316)
T cd05620         166 EILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDE  201 (316)
T ss_pred             HHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH
Confidence            999998999999999999999999999999976544

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.97  E-value=4.7e-32  Score=218.11  Aligned_cols=183  Identities=19%  Similarity=0.233  Sum_probs=142.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcH-HHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSP-QRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.+|.|+..............+..+ ..+....+|++++.      ..+...++++++.+++|...+.. 
T Consensus        11 V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~   90 (325)
T cd05604          11 VLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNGGELFFHLQRE   90 (325)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCCCCHHHHHHHc
Confidence            68888888888888887654332222222233333 33456678888763      34456788999999999777644 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++......  .......||+.|+||
T Consensus        91 ~~~~~~~~~~~~~qi~~al~~lH~---~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~--~~~~~~~gt~~y~aP  165 (325)
T cd05604          91 RSFPEPRARFYAAEIASALGYLHS---INIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQS--DTTTTFCGTPEYLAP  165 (325)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCC--CCcccccCChhhCCH
Confidence            569999999999999999999999   999999999999999999999999999987432211  112345679999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.+..++.++|+||+||+++||++|++||.....
T Consensus       166 E~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~  201 (325)
T cd05604         166 EVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDV  201 (325)
T ss_pred             HHHcCCCCCCcCccccccceehhhhcCCCCCCCCCH
Confidence            999998999999999999999999999999976543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.97  E-value=5.2e-32  Score=218.46  Aligned_cols=183  Identities=21%  Similarity=0.276  Sum_probs=145.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++...++.+|.|+..............+..+..+....+|++++.      ..+..+++++++.+|+|..++..  
T Consensus        17 V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~~   96 (331)
T cd05624          17 VAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVMDYYVGGDLLTLLSKFE   96 (331)
T ss_pred             EEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHHhc
Confidence            6888888888888888765433332223334566666677777776652      45567799999999999998864  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||+|||+   ++|+||||||+||+++.++.++|+|||++......... ......||+.|+||
T Consensus        97 ~~l~~~~~~~~~~qi~~~L~~lH~---~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~-~~~~~~gt~~y~aP  172 (331)
T cd05624          97 DRLPEDMARFYIAEMVLAIHSIHQ---LHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTV-QSSVAVGTPDYISP  172 (331)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCchHHEEEcCCCCEEEEeccceeeccCCCce-eeccccCCcccCCH
Confidence            468999999999999999999999   99999999999999999999999999999865433221 12234689999999


Q ss_pred             cccCC-----CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWMP-----YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~~-----~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |++.+     ..++.++|+||+|+++|||++|+.||....
T Consensus       173 E~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~  212 (331)
T cd05624         173 EILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAES  212 (331)
T ss_pred             HHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCC
Confidence            99875     457889999999999999999999997654

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.2e-31  Score=216.33  Aligned_cols=183  Identities=20%  Similarity=0.255  Sum_probs=145.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++...++.+|.|+..............+..|..+....+|++++.      ..+..+++++++++++|..++..  
T Consensus        17 V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~   96 (331)
T cd05597          17 VAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVMDYYVGGDLLTLLSKFE   96 (331)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEEecCCCCcHHHHHHHhc
Confidence            6888888888888888765443333333344666666677777887653      45567799999999999988854  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||++......... ......||+.|+||
T Consensus        97 ~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~~gt~~y~aP  172 (331)
T cd05597          97 DRLPEDMARFYLAEMVLAIDSVHQ---LGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTV-QSNVAVGTPDYISP  172 (331)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCeEECCCCHHHEEECCCCCEEEEECCceeecCCCCCc-cccceeccccccCH
Confidence            469999999999999999999999   99999999999999999999999999998765432221 11224579999999


Q ss_pred             cccCC-----CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWMP-----YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~~-----~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |++..     ..++.++|+||+||++|||++|+.||....
T Consensus       173 E~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~  212 (331)
T cd05597         173 EILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAES  212 (331)
T ss_pred             HHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCC
Confidence            99863     357789999999999999999999997644

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.97  E-value=2.5e-32  Score=220.02  Aligned_cols=183  Identities=20%  Similarity=0.255  Sum_probs=147.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++...++.+|.|+.+.......+....+..|..+....+|++++.      ......++++++++++|..++..  
T Consensus        17 Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   96 (330)
T cd05601          17 VQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVMEYQPGGDLLSLLNRYE   96 (330)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEECCCCCCCHHHHHHHhc
Confidence            6888888888888888765543333334445667777777778887653      34456788999999999998865  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++......... ......||+.|+||
T Consensus        97 ~~l~~~~~~~~~~qi~~aL~~lH~---~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~-~~~~~~gt~~y~aP  172 (330)
T cd05601          97 DQFDEDMAQFYLAELVLAIHSVHQ---MGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMV-NSKLPVGTPDYIAP  172 (330)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeEcccCchHheEECCCCCEEeccCCCCeECCCCCce-eeecccCCccccCH
Confidence            469999999999999999999999   99999999999999999999999999999865433222 22334679999999


Q ss_pred             cccC------CCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWM------PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~------~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |++.      ...++.++||||+||++|||++|+.||....
T Consensus       173 E~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~  213 (330)
T cd05601         173 EVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGT  213 (330)
T ss_pred             HHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCC
Confidence            9986      4567889999999999999999999997654

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.97  E-value=1.2e-31  Score=216.17  Aligned_cols=180  Identities=23%  Similarity=0.285  Sum_probs=140.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHH-Hhcccccccc------ccccceEEEEEccCCchhhhhc-c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMI-AADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~   72 (202)
                      ||++++..+++.+|.|+.+............+..|.... ...+|++++.      ..+...++++++++++|...+. .
T Consensus        11 V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~~~L~~~~~~~   90 (329)
T cd05618          11 VLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ   90 (329)
T ss_pred             EEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCCCCHHHHHHHc
Confidence            688999888888888775543222222222344444433 3347887764      3345678899999999977664 4


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||+++.......  ......||+.|+||
T Consensus        91 ~~l~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aP  165 (329)
T cd05618          91 RKLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD--TTSTFCGTPNYIAP  165 (329)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCC--ccccccCCccccCH
Confidence            569999999999999999999999   9999999999999999999999999999875322111  12335679999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      |++.+..++.++|+||+||++|||++|+.||..
T Consensus       166 E~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~  198 (329)
T cd05618         166 EILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  198 (329)
T ss_pred             HHHcCCCCCCccceecccHHHHHHhhCCCCCcc
Confidence            999998999999999999999999999999963

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.97  E-value=1.2e-31  Score=216.36  Aligned_cols=183  Identities=19%  Similarity=0.257  Sum_probs=144.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||+++....++.++.|+..............+..+.......+|++++.      .....+++++++++|+|..++..  
T Consensus        17 V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~   96 (332)
T cd05623          17 VAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVMDYYVGGDLLTLLSKFE   96 (332)
T ss_pred             EEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEEeccCCCcHHHHHHHhc
Confidence            6788888888888888765443333333334566666666777776652      34556789999999999998865  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++......... ......||+.|+||
T Consensus        97 ~~l~~~~~~~~~~qi~~al~~lH~---~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~-~~~~~~gt~~y~aP  172 (332)
T cd05623          97 DRLPEDMARFYLAEMVIAIDSVHQ---LHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTV-QSSVAVGTPDYISP  172 (332)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEECCCCCEEEeecchheecccCCcc-eecccccCccccCH
Confidence            568999999999999999999999   99999999999999999999999999998754332221 12234689999999


Q ss_pred             cccC-----CCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWM-----PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~-----~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |++.     ...++.++|+||+||++|||++|+.||....
T Consensus       173 E~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~  212 (332)
T cd05623         173 EILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAES  212 (332)
T ss_pred             HHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCC
Confidence            9986     3457889999999999999999999997654

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=5.9e-32  Score=200.91  Aligned_cols=181  Identities=17%  Similarity=0.163  Sum_probs=157.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccccc------ceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSEDT------ETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||.||.+.+.-+||.||.-+.+-....-.+.+..|.-+..+.+|||++...++      .+++.++..+|.++..+..  
T Consensus        38 vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLilEya~~gel~k~L~~~~  117 (281)
T KOG0580|consen   38 VYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLILEYAPRGELYKDLQEGR  117 (281)
T ss_pred             EeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEEEEecCCchHHHHHHhcc
Confidence            79999999999999999766665555667778888888999999999865444      3588999999999998863  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       ..+++.....+..|++.|+.|+|.   +++||||+||+|+|++..+..|++|||-+...+.    ......+||.-|.+
T Consensus       118 ~~~f~e~~~a~Yi~q~A~Al~y~h~---k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~----~kR~tlcgt~dyl~  190 (281)
T KOG0580|consen  118 MKRFDEQRAATYIKQLANALLYCHL---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS----NKRKTLCGTLDYLP  190 (281)
T ss_pred             cccccccchhHHHHHHHHHHHHhcc---CCcccCCCCHHHhccCCCCCeeccCCCceeecCC----CCceeeecccccCC
Confidence             348899999999999999999999   9999999999999999999999999998865432    12344678999999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ||+..+..++..+|+|++|++.||++.|.+||.....
T Consensus       191 pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~  227 (281)
T KOG0580|consen  191 PEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSH  227 (281)
T ss_pred             HhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhh
Confidence            9999999999999999999999999999999998773

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.97  E-value=2.6e-31  Score=213.25  Aligned_cols=183  Identities=21%  Similarity=0.269  Sum_probs=141.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHh-cccccccc------ccccceEEEEEccCCchhhhhccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAA-DNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~   73 (202)
                      ||++++..+++.+|.|+.+............+..|..+... .+|++++.      ..+..+++++++.+++|...+...
T Consensus        11 V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~   90 (318)
T cd05570          11 VLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNGGDLMFHIQRS   90 (318)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCCCCHHHHHHHc
Confidence            68888888888888877654432222223333444444433 36777663      344567889999999998777544


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                       .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++.......  ......|++.|+||
T Consensus        91 ~~l~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~g~~~y~aP  165 (318)
T cd05570          91 GRFDEPRARFYAAEIVLGLQFLHE---RGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGV--TTSTFCGTPDYIAP  165 (318)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCeEccCCCHHHeEECCCCcEEecccCCCeecCcCCC--cccceecCccccCH
Confidence             79999999999999999999999   9999999999999999999999999999874221111  12234579999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.+..++.++|+||+||++++|++|+.||.....
T Consensus       166 E~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~  201 (318)
T cd05570         166 EILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDE  201 (318)
T ss_pred             HHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCH
Confidence            999998999999999999999999999999976543

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=7.4e-32  Score=210.51  Aligned_cols=187  Identities=18%  Similarity=0.228  Sum_probs=143.7

Q ss_pred             CCccccCCCcceeeh-hhhchhhhhccCCcccCCcHHHHHHhcccccccc-----------ccccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITR-TIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----------SEDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~~~~~~~~l~~   68 (202)
                      |.+|.+..++..||. |+...-  ......++-..|...+.+.+|+|+++           ...-.+++.++| +..|..
T Consensus        38 VcsA~~~~t~~~VAIKKi~~~F--~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvYiV~elM-etDL~~  114 (359)
T KOG0660|consen   38 VCSAKDKRTGEKVAIKKILNPF--ENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVYLVFELM-ETDLHQ  114 (359)
T ss_pred             EEEEEEcCCCCEeehhhhhhhh--hchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeEEehhHH-hhHHHH
Confidence            456667777777764 333221  12223445567777788888998874           222233445555 578888


Q ss_pred             hhccCC-CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCC
Q 044746           69 LCKKNI-LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP  147 (202)
Q Consensus        69 ~~~~~~-~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~  147 (202)
                      +++.+. ++...+..+..|++.||.|+|+   .+++||||||.|++++.+..+|++|||+|+...........+...-|.
T Consensus       115 iik~~~~L~d~H~q~f~YQiLrgLKyiHS---AnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTR  191 (359)
T KOG0660|consen  115 IIKSQQDLTDDHAQYFLYQILRGLKYIHS---ANVIHRDLKPSNLLLNADCDLKICDFGLARYLDKFFEDGFMTEYVATR  191 (359)
T ss_pred             HHHcCccccHHHHHHHHHHHHHhcchhhc---ccccccccchhheeeccCCCEEeccccceeeccccCcccchhcceeee
Confidence            888887 9999999999999999999999   899999999999999999999999999999775432222234556699


Q ss_pred             cccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhcccccc
Q 044746          148 GCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEW  193 (202)
Q Consensus       148 ~y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~~~~  193 (202)
                      .|.|||++.. ..|+...||||.||++.||++|++-|.+.+.-+|..
T Consensus       192 WYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~  238 (359)
T KOG0660|consen  192 WYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQ  238 (359)
T ss_pred             eecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHH
Confidence            9999998764 579999999999999999999999999988776643

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.97  E-value=2.6e-31  Score=224.68  Aligned_cols=184  Identities=19%  Similarity=0.262  Sum_probs=144.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc--------------cceEEEEEccCCch
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED--------------TETYIKGFLAMGPF   66 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------------~~~~~~~~~~~~~l   66 (202)
                      ||++++...++.+|.|+....... .....++..|.......+|++++....              ...++++++++|+|
T Consensus        48 Vy~a~~~~~g~~vAvK~i~~~~~~-~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~~~~~i~lV~Ey~~~gsL  126 (496)
T PTZ00283         48 VLCAKRVSDGEPFAVKVVDMEGMS-EADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPENVLMIALVLDYANAGDL  126 (496)
T ss_pred             EEEEEEcCCCCEEEEEEEecccCC-HHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcccceEEEEEEeCCCCCcH
Confidence            688888888888888875432211 122234555666666677777664211              23477889999999


Q ss_pred             hhhhcc-----CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccC
Q 044746           67 YLLCKK-----NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST  141 (202)
Q Consensus        67 ~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~  141 (202)
                      ..++..     ..+++..+..++.|++.||.|||+   ++|+||||||+||+++.++.+||+|||+++............
T Consensus       127 ~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~---~~IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~  203 (496)
T PTZ00283        127 RQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHS---KHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGR  203 (496)
T ss_pred             HHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEeCCCCEEEEecccCeeccccccccccc
Confidence            887743     358999999999999999999999   999999999999999999999999999998654332222234


Q ss_pred             CCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       142 ~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ...||+.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus       204 ~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~  250 (496)
T PTZ00283        204 TFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENM  250 (496)
T ss_pred             cccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCH
Confidence            45689999999999998999999999999999999999999976543

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=3.2e-31  Score=213.21  Aligned_cols=187  Identities=19%  Similarity=0.210  Sum_probs=147.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccC------Cc-----ccCCcHHHHHHhcccccccc--------ccccceEEEEEc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMD------KP-----IRFTSPQRMIAADNFSNLVG--------SEDTETYIKGFL   61 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~------~~-----~~~~~~~~~~~~~~~~~~i~--------~~~~~~~~~~~~   61 (202)
                      |-+|++...++++|.|+..+.+.....      ..     .+...|..++....|+|++.        ..+..+++.+|+
T Consensus       113 VkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~LiEvLDDP~s~~~YlVley~  192 (576)
T KOG0585|consen  113 VKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLIEVLDDPESDKLYLVLEYC  192 (576)
T ss_pred             EEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEEEeecCcccCceEEEEEec
Confidence            346889999999999886555433211      11     24556777888899998873        556677889999


Q ss_pred             cCCchhhhhccCC-CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceecccc---Ccc
Q 044746           62 AMGPFYLLCKKNI-LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE---HTH  137 (202)
Q Consensus        62 ~~~~l~~~~~~~~-~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~---~~~  137 (202)
                      +.|.+...-.... +++.+++.+.+++..||+|||.   ++||||||||.|+|++.+|++||+|||.+......   ...
T Consensus       193 s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~---QgiiHRDIKPsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d  269 (576)
T KOG0585|consen  193 SKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHY---QGIIHRDIKPSNLLLSSDGTVKISDFGVSNEFPQGSDEGSD  269 (576)
T ss_pred             cCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHh---cCeeccccchhheEEcCCCcEEeeccceeeecccCCccccH
Confidence            9998876665556 9999999999999999999999   99999999999999999999999999999865221   111


Q ss_pred             cccCCCCCCCcccCCcccCCCC----CCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          138 ITSTGRRRTPGCEAPELWMPYS----VTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       138 ~~~~~~~gt~~y~aPe~~~~~~----~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      .......|||.|+|||++.+..    .+.+.||||+|++||-++.|+.||.++...+
T Consensus       270 ~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~~~  326 (576)
T KOG0585|consen  270 DQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFELE  326 (576)
T ss_pred             HHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchHHH
Confidence            1123367899999999998732    3467899999999999999999998776543

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.97  E-value=4.3e-31  Score=222.76  Aligned_cols=181  Identities=20%  Similarity=0.224  Sum_probs=141.3

Q ss_pred             CCccccCCC-cceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc--
Q 044746            1 MEKPRNRGS-TRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK--   71 (202)
Q Consensus         1 v~k~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~--   71 (202)
                      ||+|.+... ++.|++|......   ......+..|...+...+|++++.      ..+..+++++++++|+|...+.  
T Consensus        83 vy~a~~~~~~~~~vv~K~~~~~~---~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~  159 (478)
T PTZ00267         83 AFVATRGSDPKEKVVAKFVMLND---ERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGSGGDLNKQIKQR  159 (478)
T ss_pred             EEEEEEcCCCCeEEEEEEcccCC---HHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECCCCCCHHHHHHHH
Confidence            466766554 4555554321111   111223556777788889998873      4456678999999999987653  


Q ss_pred             ---cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           72 ---KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        72 ---~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                         ...+++.++..++.|++.||.|||+   ++|+||||||+||+++.++.+||+|||+++...............||+.
T Consensus       160 ~~~~~~l~~~~~~~i~~qi~~aL~~lH~---~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~  236 (478)
T PTZ00267        160 LKEHLPFQEYEVGLLFYQIVLALDEVHS---RKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPY  236 (478)
T ss_pred             HhccCCCCHHHHHHHHHHHHHHHHHHHh---CCEEECCcCHHhEEECCCCcEEEEeCcCceecCCccccccccccCCCcc
Confidence               3358999999999999999999999   9999999999999999999999999999987644332222344568999


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |+|||++.+..++.++||||+||+++||++|+.||....
T Consensus       237 y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~  275 (478)
T PTZ00267        237 YLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPS  275 (478)
T ss_pred             ccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999998899999999999999999999999997644

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.97  E-value=8.1e-31  Score=206.97  Aligned_cols=182  Identities=21%  Similarity=0.227  Sum_probs=143.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.++.|+.+..... ......+..|.......+|++++.      ..+...+++++++++.+..+... .
T Consensus        17 v~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~   95 (287)
T cd07848          17 VLKCRHKETKEIVAIKKFKDSEEN-EEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEYVEKNMLELLEEMPN   95 (287)
T ss_pred             EEEEEECCCCcEEEEEEEeccccc-ccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEecCCCCHHHHHHhcCC
Confidence            688999888888888765443221 122334556666777788888763      34456789999998877665543 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++......... ......|++.|+|||
T Consensus        96 ~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE  171 (287)
T cd07848          96 GVPPEKVRSYIYQLIKAIHWCHK---NDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNA-NYTEYVATRWYRSPE  171 (287)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEEeeccCcccccccccc-cccccccccccCCcH
Confidence            68999999999999999999999   99999999999999999999999999999865432211 122345789999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ++.+..++.++|+||+||++|||++|++||....
T Consensus       172 ~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~  205 (287)
T cd07848         172 LLLGAPYGKAVDMWSVGCILGELSDGQPLFPGES  205 (287)
T ss_pred             HHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCC
Confidence            9988889999999999999999999999997654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.97  E-value=5.6e-31  Score=212.36  Aligned_cols=182  Identities=16%  Similarity=0.200  Sum_probs=138.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc-----------ccceEEEEEccCCchhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE-----------DTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++++..+++.||.|..+.... ......++..|.......+|+|++...           ...+++++++. ++|...
T Consensus        16 V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~   93 (338)
T cd07859          16 VCSAIDTHTGEKVAIKKINDVFE-HVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFELME-SDLHQV   93 (338)
T ss_pred             EEEEEECCCCCEEEEEEechhhc-cchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEEEEecCC-CCHHHH
Confidence            68888888788888775432211 112233466677777888999876421           12467788885 567666


Q ss_pred             hc-cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc-ccccCCCCCCC
Q 044746           70 CK-KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT-HITSTGRRRTP  147 (202)
Q Consensus        70 ~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~gt~  147 (202)
                      +. ...+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++....... ........||+
T Consensus        94 l~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~  170 (338)
T cd07859          94 IKANDDLTPEHHQFFLYQLLRALKYIHT---ANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATR  170 (338)
T ss_pred             HHhcccCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCcEEEccCccccccccccCccccccCCCCCC
Confidence            54 4469999999999999999999999   9999999999999999999999999999975432211 11123356799


Q ss_pred             cccCCcccCC--CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          148 GCEAPELWMP--YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       148 ~y~aPe~~~~--~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      .|+|||++.+  ..++.++||||+||+++||++|++||....
T Consensus       171 ~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~  212 (338)
T cd07859         171 WYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKN  212 (338)
T ss_pred             CcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999865  578899999999999999999999997543

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.97  E-value=6.5e-32  Score=211.16  Aligned_cols=176  Identities=20%  Similarity=0.274  Sum_probs=134.2

Q ss_pred             CCccccCCCcceeeh-hhhchhhhhccCCcccCCcHHHHHHhccccccccc---------c--ccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITR-TIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS---------E--DTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---------~--~~~~~~~~~~~~~~l~~   68 (202)
                      ||++..+...+.||. |+....        +--..|..++...+|+|++.-         .  -+..++++|++. +|+.
T Consensus        40 Vyq~~~~e~~~~vAIKKv~~d~--------r~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVleymP~-tL~~  110 (364)
T KOG0658|consen   40 VYQAKLRETEEEVAIKKVLQDK--------RYKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEYMPE-TLYR  110 (364)
T ss_pred             EEEEEEcCCCceeEEEEecCCC--------CcCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHHhchH-HHHH
Confidence            677777777666664 433222        123345555668899999841         1  133355666663 5555


Q ss_pred             hhc-----cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC-CceEEeeeecceeccccCcccccCC
Q 044746           69 LCK-----KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN-FFPKAADFGLAKLYNREHTHITSTG  142 (202)
Q Consensus        69 ~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~-~~~kl~dfgl~~~~~~~~~~~~~~~  142 (202)
                      ..+     +..++.-.++-+..||.+||.|||+   .+|+||||||+|+|++.+ |.+||+|||.|+.+.......   .
T Consensus       111 ~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~---~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~epni---S  184 (364)
T KOG0658|consen  111 VIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHS---HGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEPNI---S  184 (364)
T ss_pred             HHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHh---cCcccCCCChheEEEcCCCCeEEeccCCcceeeccCCCce---e
Confidence            555     5678889999999999999999999   999999999999999966 999999999999765443322   2


Q ss_pred             CCCCCcccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhcccc
Q 044746          143 RRRTPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQ  191 (202)
Q Consensus       143 ~~gt~~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~~  191 (202)
                      ...|..|+|||++.+. .|+.+.||||.||++.||+.|++-|.+++..+|
T Consensus       185 YicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQ  234 (364)
T KOG0658|consen  185 YICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQ  234 (364)
T ss_pred             EEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHH
Confidence            2338899999999875 799999999999999999999999999887665

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.2e-31  Score=216.18  Aligned_cols=182  Identities=19%  Similarity=0.258  Sum_probs=137.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcH-HHHHHhc--ccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSP-QRMIAAD--NFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++++...++.+|.|+..............+..+ ..+....  +|+++++      .....+++++++.+++|..++.
T Consensus         9 Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~   88 (330)
T cd05586           9 VYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSGGELFWHLQ   88 (330)
T ss_pred             EEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCCChHHHHHH
Confidence            68899988888888877543322111111122222 2222222  6777764      3455678899999999987764


Q ss_pred             -cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           72 -KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        72 -~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                       ...+++..+..++.|++.||.|||+   ++|+||||||+||+++.++.++|+|||+++.......  ......||+.|+
T Consensus        89 ~~~~~~~~~~~~~~~qil~al~~LH~---~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~gt~~y~  163 (330)
T cd05586          89 KEGRFSEDRAKFYIAELVLALEHLHK---YDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNK--TTNTFCGTTEYL  163 (330)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCC--CccCccCCcccc
Confidence             4569999999999999999999999   9999999999999999999999999999875322111  123456899999


Q ss_pred             CCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          151 APELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       151 aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |||++.+. .++.++|+||+||++|+|++|+.||....
T Consensus       164 aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~  201 (330)
T cd05586         164 APEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAED  201 (330)
T ss_pred             CHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCC
Confidence            99998754 47899999999999999999999997654

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.97  E-value=9.6e-31  Score=210.39  Aligned_cols=182  Identities=21%  Similarity=0.252  Sum_probs=141.5

Q ss_pred             CCcccc---CCCcceeehhhhchhhh-hccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh
Q 044746            1 MEKPRN---RGSTRFITRTIDKSLDA-MEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~---~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++++   ...++.+|.|+.+.... ........+..|..+....+|++++.      ..+...++++++.+++|...+
T Consensus        12 V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~   91 (323)
T cd05584          12 VFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMHL   91 (323)
T ss_pred             EEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeCCCCchHHHHH
Confidence            466654   34567777776544322 11222334556667777888998763      344567889999999998887


Q ss_pred             cc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           71 KK-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        71 ~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                      .. +.+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||+++.......  ......||+.|
T Consensus        92 ~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y  166 (323)
T cd05584          92 EREGIFMEDTACFYLSEISLALEHLHQ---QGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGT--VTHTFCGTIEY  166 (323)
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCC--cccccCCCccc
Confidence            54 457889999999999999999999   9999999999999999999999999999875322211  12334679999


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +|||++.+..++.++||||+|+++|||++|+.||....
T Consensus       167 ~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~  204 (323)
T cd05584         167 MAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAEN  204 (323)
T ss_pred             cChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCC
Confidence            99999998888999999999999999999999997654

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.97  E-value=3.4e-30  Score=202.90  Aligned_cols=180  Identities=21%  Similarity=0.225  Sum_probs=140.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++...++.++.|...............+..|..+....+|++++.      .+....++++++.+++|......  
T Consensus         9 Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~~~~~~   88 (277)
T cd05607           9 VCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDLKYHIYNVG   88 (277)
T ss_pred             EEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCHHHHHHhcc
Confidence            6888888877777766543322211111222334656677778898763      34556789999999999776632  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++........   .....|++.|+|
T Consensus        89 ~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~---~~~~~~~~~y~a  162 (277)
T cd05607          89 ERGLEMERVIHYSAQITCGILHLHS---MDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKT---ITQRAGTNGYMA  162 (277)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHH---CCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCce---eeccCCCCCccC
Confidence             358899999999999999999999   9999999999999999999999999999876543221   123457899999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      ||++.+..++.++|+||+||++|||++|+.||...
T Consensus       163 PE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~  197 (277)
T cd05607         163 PEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDH  197 (277)
T ss_pred             HHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCC
Confidence            99998888999999999999999999999999753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.97  E-value=2.2e-31  Score=221.08  Aligned_cols=179  Identities=21%  Similarity=0.258  Sum_probs=136.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcc-cc-----cccc------ccccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADN-FS-----NLVG------SEDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~i~------~~~~~~~~~~~~~~~~l~~   68 (202)
                      |-||.+...++.||.||.+....-...    -..|..++...+ +.     |+|.      ..+..+++.|.+ ..+|++
T Consensus       202 Vvk~~d~~T~e~VAIKIiKN~k~f~~Q----~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~HlciVfELL-~~NLYe  276 (586)
T KOG0667|consen  202 VVKAYDHKTGEIVAIKIIKNKKRFLRQ----AQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCIVFELL-STNLYE  276 (586)
T ss_pred             eEEEEecCCCcEEEEEeeccChHHHHH----HHHHHHHHHHHhccCCCCCeeEEEeeeccccccceeeeehhh-hhhHHH
Confidence            568999999999999997766443222    222333333322 11     3332      222333444444 358888


Q ss_pred             hhccCC---CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC--CceEEeeeecceeccccCcccccCCC
Q 044746           69 LCKKNI---LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN--FFPKAADFGLAKLYNREHTHITSTGR  143 (202)
Q Consensus        69 ~~~~~~---~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~--~~~kl~dfgl~~~~~~~~~~~~~~~~  143 (202)
                      +++.+.   ++...++.++.||+.||.+||+   .+|||+||||+|||+...  ..+|++|||.|........     ..
T Consensus       277 llK~n~f~Glsl~~ir~~~~Qil~~L~~L~~---l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~vy-----tY  348 (586)
T KOG0667|consen  277 LLKNNKFRGLSLPLVRKFAQQILTALLFLHE---LGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRVY-----TY  348 (586)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCChhheeeccCCcCceeEEecccccccCCcce-----ee
Confidence            887654   8899999999999999999998   999999999999999643  4789999999987655443     22


Q ss_pred             CCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhccccc
Q 044746          144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQE  192 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~~~  192 (202)
                      .-+..|.|||++.+.+|+.+.|||||||+++||.+|.+.|.++++.+|.
T Consensus       349 iQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~ne~DQl  397 (586)
T KOG0667|consen  349 IQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGDNEYDQL  397 (586)
T ss_pred             eeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCCCHHHHH
Confidence            3378899999999999999999999999999999999999998888763

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=3.3e-30  Score=212.32  Aligned_cols=172  Identities=21%  Similarity=0.236  Sum_probs=135.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc------cccceEEEEEccCCchhhhh-ccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS------EDTETYIKGFLAMGPFYLLC-KKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~~~~~~~~~~~~~~~l~~~~-~~~   73 (202)
                      ||++++...++.||.|....         ..+..|..+....+|+|++..      .....++++++. +.|..++ ...
T Consensus       108 V~~~~d~~~~~~vaiK~~~~---------~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~  177 (391)
T PHA03212        108 AFACIDNKTCEHVVIKAGQR---------GGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYK-TDLYCYLAAKR  177 (391)
T ss_pred             EEEEEECCCCCEEEEechhh---------hhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecCC-CCHHHHHHhcC
Confidence            68888888888888875321         234567777888899988743      233445666664 5665555 445


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.+++.++.|++.||.|||+   ++|+||||||+||+++.++.++|+|||++....... ........||+.|+|||
T Consensus       178 ~l~~~~~~~i~~qi~~aL~ylH~---~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~-~~~~~~~~gt~~y~aPE  253 (391)
T PHA03212        178 NIAICDILAIERSVLRAIQYLHE---NRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDIN-ANKYYGWAGTIATNAPE  253 (391)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHhEEEcCCCCEEEEeCCccccccccc-ccccccccCccCCCChh
Confidence            69999999999999999999999   999999999999999999999999999987532211 11223456899999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      ++.+..++.++|+||+||++|||++|+.||...
T Consensus       254 ~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~  286 (391)
T PHA03212        254 LLARDPYGPAVDIWSAGIVLFEMATCHDSLFEK  286 (391)
T ss_pred             hhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCc
Confidence            999889999999999999999999999887643

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.97  E-value=1.9e-30  Score=205.41  Aligned_cols=180  Identities=20%  Similarity=0.297  Sum_probs=139.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..++..||.|+.+...  .......+..|..+....+|+|++.      ......++++++.+ +|..++..  
T Consensus        21 Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~   97 (288)
T cd07871          21 VFKGRSKLTENLVALKEIRLEH--EEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEYLDS-DLKQYLDNCG   97 (288)
T ss_pred             EEEEEECCCCCEEEEEEecccc--cCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeCCCc-CHHHHHHhcC
Confidence            6889888888888887654321  1122334556777778888998763      33345678888774 77766643  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   ++|+||||||+||+++.++.+||+|||+++.......  ......+++.|+||
T Consensus        98 ~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~--~~~~~~~~~~y~aP  172 (288)
T cd07871          98 NLMSMHNVKIFMFQLLRGLSYCHK---RKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTK--TYSNEVVTLWYRPP  172 (288)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEECcCcceeeccCCCc--cccCceecccccCh
Confidence            347899999999999999999999   9999999999999999999999999999975432221  12334568999999


Q ss_pred             cccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.+ ..++.++|+||+||+++||++|++||.....
T Consensus       173 E~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~  209 (288)
T cd07871         173 DVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTV  209 (288)
T ss_pred             HHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            98865 4688999999999999999999999976543

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.97  E-value=2.9e-30  Score=205.63  Aligned_cols=178  Identities=17%  Similarity=0.267  Sum_probs=136.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..+++.+|.|+.+....  ......+..|.......+|++++.      ......++++++. +++..++..  
T Consensus        21 V~~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~   97 (303)
T cd07869          21 VYKGKSKVNGKLVALKVIRLQEE--EGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFEYVH-TDLCQYMDKHP   97 (303)
T ss_pred             EEEEEECCCCCEEEEEEeccccc--cccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEECCC-cCHHHHHHhCC
Confidence            68888888888888776543321  112233445666777788888763      3445668888886 455555433  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||++........  ......|++.|+||
T Consensus        98 ~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aP  172 (303)
T cd07869          98 GGLHPENVKLFLFQLLRGLSYIHQ---RYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSH--TYSNEVVTLWYRPP  172 (303)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECCCCcceeccCCCc--cCCCCcccCCCCCh
Confidence            458999999999999999999999   9999999999999999999999999999875432221  12334578999999


Q ss_pred             cccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          153 ELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       153 e~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      |++.+ ..++.++|+||+||+++||++|++||.+.
T Consensus       173 E~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  207 (303)
T cd07869         173 DVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGM  207 (303)
T ss_pred             HHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99865 45788999999999999999999999764

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=3.3e-30  Score=203.72  Aligned_cols=182  Identities=19%  Similarity=0.210  Sum_probs=143.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc---
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK---   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~---   71 (202)
                      ||++++...+..||.|...............+..|.......+|++++.      ......++++++++++|...+.   
T Consensus        16 V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~   95 (285)
T cd05605          16 VCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMG   95 (285)
T ss_pred             EEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEeccCCCcHHHHHHhcC
Confidence            6788887777888877654332222222233455666677778887753      3455778999999999977663   


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                      ...+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++........   .....|++.|+|
T Consensus        96 ~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~---~~~~~~~~~y~a  169 (285)
T cd05605          96 NPGFDEERAVFYAAEITCGLEDLHR---ERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGET---IRGRVGTVGYMA  169 (285)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHH---CCcEecCCCHHHEEECCCCCEEEeeCCCceecCCCCc---cccccCCCCccC
Confidence            2358999999999999999999999   9999999999999999999999999999986533221   123467899999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ||++.+..++.++|+||+|+++||+++|+.||.+...
T Consensus       170 PE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~  206 (285)
T cd05605         170 PEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKE  206 (285)
T ss_pred             cHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCch
Confidence            9999988899999999999999999999999986543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=3.8e-31  Score=218.66  Aligned_cols=184  Identities=22%  Similarity=0.304  Sum_probs=151.4

Q ss_pred             CCccccCCCcceeehhhhchhhh-hccCCcccCCcHHHHHHhcccccccccc--------ccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDA-MEMDKPIRFTSPQRMIAADNFSNLVGSE--------DTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||||-|...+..||---.+..+. ...+...+|..|..++...+|+||+...        ....++.+.+..|+|..+.+
T Consensus        56 VYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL~TSGtLr~Y~k  135 (632)
T KOG0584|consen   56 VYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITELFTSGTLREYRK  135 (632)
T ss_pred             eeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeecccCCcHHHHHH
Confidence            79999988888888433322222 2223457899999999999999998532        33558999999999999997


Q ss_pred             cC-CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC-CceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           72 KN-ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN-FFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        72 ~~-~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~-~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                      +. .+.....+.|++||++||.|||+.- .+|||||||.+||++.++ |.+||+|+|||+......    .....|||-|
T Consensus       136 k~~~vn~kaik~W~RQILkGL~yLHs~~-PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~----aksvIGTPEF  210 (632)
T KOG0584|consen  136 KHRRVNIKAIKSWCRQILKGLVYLHSQD-PPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSH----AKSVIGTPEF  210 (632)
T ss_pred             HhccCCHHHHHHHHHHHHHHhhhhhcCC-CCccccccccceEEEcCCcCceeecchhHHHHhhccc----cceeccCccc
Confidence            75 5999999999999999999999853 799999999999999864 899999999999765433    2346899999


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      ||||+.- ..|+..+||||||++++||+|+..||.--..-.
T Consensus       211 MAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~A  250 (632)
T KOG0584|consen  211 MAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSECTNPA  250 (632)
T ss_pred             cChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhhCCHH
Confidence            9999986 689999999999999999999999997544433

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.1e-30  Score=197.94  Aligned_cols=176  Identities=21%  Similarity=0.327  Sum_probs=141.7

Q ss_pred             CCCcceeehhhhchhhhhccCCcccCCcH-----HHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-C
Q 044746            7 RGSTRFITRTIDKSLDAMEMDKPIRFTSP-----QRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-I   74 (202)
Q Consensus         7 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-~   74 (202)
                      .+++++.++++.......+.+.+.++..+     .++.....||++|.      +..+.+++.+.++.|.|++++... .
T Consensus        40 ~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~sF~FlVFdl~prGELFDyLts~Vt  119 (411)
T KOG0599|consen   40 ETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDAFVFLVFDLMPRGELFDYLTSKVT  119 (411)
T ss_pred             ccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcchhhhhhhhcccchHHHHhhhhee
Confidence            56777777777655444444444443322     33445578898773      566677888899999999999665 5


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +|+.+.+.+++|+..|++|||.   ++|+||||||+|||++.+.+++|+|||.+..+..+..   ....+|||+|+|||.
T Consensus       120 lSEK~tR~iMrqlfegVeylHa---~~IVHRDLKpENILlddn~~i~isDFGFa~~l~~Gek---LrelCGTPgYLAPEt  193 (411)
T KOG0599|consen  120 LSEKETRRIMRQLFEGVEYLHA---RNIVHRDLKPENILLDDNMNIKISDFGFACQLEPGEK---LRELCGTPGYLAPET  193 (411)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHH---hhhhhcccChhheeeccccceEEeccceeeccCCchh---HHHhcCCCcccChhh
Confidence            9999999999999999999999   9999999999999999999999999999987655443   345678999999999


Q ss_pred             cCC------CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          155 WMP------YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       155 ~~~------~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +..      ..|+..+|+||+|+++|.++.|.+||.....
T Consensus       194 ikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQ  233 (411)
T KOG0599|consen  194 IKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQ  233 (411)
T ss_pred             eeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHH
Confidence            864      3578889999999999999999999976544

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.97  E-value=2.2e-30  Score=216.59  Aligned_cols=180  Identities=20%  Similarity=0.248  Sum_probs=148.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----c-------cccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----S-------EDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~-------~~~~~~~~~~~~~~~l~~   68 (202)
                      ||+.|++.+++.||+|.-+..  .......+.-.|..++...+|+||+.     +       .....++++++.+|+|..
T Consensus        29 V~rgrnketG~~vAvK~~~~~--~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlvmEyC~gGsL~~  106 (732)
T KOG4250|consen   29 VYRGRNKETGRLVAVKTFNKE--SSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLVMEYCSGGSLRK  106 (732)
T ss_pred             eeeecccccccchhHHhhhhh--cccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEEEeecCCCcHHH
Confidence            799999999999999875443  23333445667777777888999872     1       223458999999999999


Q ss_pred             hhccC----CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc--CCC--ceEEeeeecceeccccCccccc
Q 044746           69 LCKKN----ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD--ENF--FPKAADFGLAKLYNREHTHITS  140 (202)
Q Consensus        69 ~~~~~----~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~--~~~--~~kl~dfgl~~~~~~~~~~~~~  140 (202)
                      .+...    .+++.+.+.+...+..|+.|||+   ++|+||||||.||++-  .+|  ..||+|||.|+...++.   ..
T Consensus       107 ~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrE---n~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s---~~  180 (732)
T KOG4250|consen  107 VLNSPENAYGLPESEFLDLLSDLVSALRHLRE---NGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNS---LF  180 (732)
T ss_pred             HhcCcccccCCCHHHHHHHHHHHHHHHHHHHH---cCceeccCCCCcEEEeecCCCceEEeeecccccccCCCCC---ee
Confidence            99654    49999999999999999999998   9999999999999884  223  46999999999776554   34


Q ss_pred             CCCCCCCcccCCcccC-CCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          141 TGRRRTPGCEAPELWM-PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       141 ~~~~gt~~y~aPe~~~-~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ...+||+.|++||+.. ...|+..+|.|||||++|+.+||..||.....
T Consensus       181 ~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~  229 (732)
T KOG4250|consen  181 TSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFGG  229 (732)
T ss_pred             eeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCCC
Confidence            5678999999999998 47899999999999999999999999976543

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.97  E-value=2.9e-30  Score=206.83  Aligned_cols=182  Identities=19%  Similarity=0.239  Sum_probs=139.1

Q ss_pred             CCccccCCCcce----eehhhhchhhhhccCCcccCCcHHHHHHhccccccccc-----cccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRF----ITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS-----EDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||+++....+..    |+.|+.+..  .......++..|.......+|+|++..     .....++.+++.+|+|.+++.
T Consensus        23 Vy~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~~~~~v~e~~~~g~l~~~l~  100 (316)
T cd05108          23 VYKGLWIPEGEKVKIPVAIKELREA--TSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVR  100 (316)
T ss_pred             EEEEEEecCCCccceeEEEEecccc--CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCCCceeeeecCCCCCHHHHHH
Confidence            577765444443    555543321  112223456667777788889987632     233457888999999998886


Q ss_pred             cC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           72 KN--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        72 ~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                      ..  .+++.....++.|++.||+|||+   .+++||||||+||+++.++.+||+|||+++...............++..|
T Consensus       101 ~~~~~~~~~~~~~~~~qi~~~L~~LH~---~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y  177 (316)
T cd05108         101 EHKDNIGSQYLLNWCVQIAKGMNYLEE---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKW  177 (316)
T ss_pred             hccccCCHHHHHHHHHHHHHHHHHHHh---cCeeccccchhheEecCCCcEEEccccccccccCCCcceeccCCccceee
Confidence            54  58899999999999999999999   99999999999999999999999999999876543332222233346789


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      +|||++....++.++|+||||+++||+++ |+.||.+..
T Consensus       178 ~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~  216 (316)
T cd05108         178 MALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP  216 (316)
T ss_pred             cChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC
Confidence            99999998899999999999999999998 999997644

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.97  E-value=2.7e-30  Score=204.31  Aligned_cols=180  Identities=22%  Similarity=0.309  Sum_probs=132.1

Q ss_pred             CCccccC-CCcceeehhhhchhhhhccCCcccCCcHHHHHH---hccccccccc-----------cccceEEEEEccCCc
Q 044746            1 MEKPRNR-GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIA---ADNFSNLVGS-----------EDTETYIKGFLAMGP   65 (202)
Q Consensus         1 v~k~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~-----------~~~~~~~~~~~~~~~   65 (202)
                      ||++++. .++..||.|..+...... .....+..|.....   ..+|+|++..           .....++++++. ++
T Consensus        17 Vy~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~-~~   94 (290)
T cd07862          17 VFKARDLKNGGRFVALKRVRVQTGEE-GMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-QD   94 (290)
T ss_pred             EEEEEEcCCCCeEEEEEEEecccCCC-CchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCCCcEEEEEccCC-CC
Confidence            6888874 445677776543322111 11112222332222   2367877642           223456777775 56


Q ss_pred             hhhhhcc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCC
Q 044746           66 FYLLCKK---NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTG  142 (202)
Q Consensus        66 l~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~  142 (202)
                      |..++..   ..+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||+++......   ....
T Consensus        95 l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~---~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---~~~~  168 (290)
T cd07862          95 LTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQM---ALTS  168 (290)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEEcCCCCEEEccccceEeccCCc---cccc
Confidence            7666643   348999999999999999999999   999999999999999999999999999998654331   2234


Q ss_pred             CCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          143 RRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       143 ~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ..|++.|+|||.+.+..++.++|+||+||++|||++|++||.+..+
T Consensus       169 ~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~  214 (290)
T cd07862         169 VVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSD  214 (290)
T ss_pred             ccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCH
Confidence            4579999999999888899999999999999999999999986544

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=3.1e-30  Score=205.18  Aligned_cols=185  Identities=19%  Similarity=0.249  Sum_probs=147.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccc-------ccccccceEEEEEccCCchhh-hhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNL-------VGSEDTETYIKGFLAMGPFYL-LCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------i~~~~~~~~~~~~~~~~~l~~-~~~~   72 (202)
                      |..|..+++.++.|.|+.++.-....+...--..|...++...-|-.       ...-+-.+++++|..+|.|.. +.+-
T Consensus       365 VlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyFVMEyvnGGDLMyhiQQ~  444 (683)
T KOG0696|consen  365 VLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV  444 (683)
T ss_pred             eeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheeeEEEEecCchhhhHHHHh
Confidence            44677889999999999877655544443333334444444333322       133445568999999998754 4456


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      +++.+..+..++.+|+-||-|||+   ++||.||||.+|++++.+|++||+|||+++.--  ....+....+|||-|+||
T Consensus       445 GkFKEp~AvFYAaEiaigLFFLh~---kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni--~~~~TTkTFCGTPdYiAP  519 (683)
T KOG0696|consen  445 GKFKEPVAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI--FDGVTTKTFCGTPDYIAP  519 (683)
T ss_pred             cccCCchhhhhhHHHHHHhhhhhc---CCeeeeeccccceEeccCCceEeeecccccccc--cCCcceeeecCCCccccc
Confidence            789999999999999999999999   999999999999999999999999999998422  222334567899999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      |.+...+|+..+|+||+|++||||+.|++||+++++++
T Consensus       520 EIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~e  557 (683)
T KOG0696|consen  520 EIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDE  557 (683)
T ss_pred             ceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHHH
Confidence            99999999999999999999999999999999987765

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.96  E-value=4.7e-30  Score=209.08  Aligned_cols=184  Identities=20%  Similarity=0.203  Sum_probs=149.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcc-cccccc------ccccceEEEEEccCCchhhhhccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADN-FSNLVG------SEDTETYIKGFLAMGPFYLLCKKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~   73 (202)
                      ||+++...+++.+|.|+-.+...........+..|..++.... |+|++.      ......++++++.+|.|++.+...
T Consensus        51 v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~lvmEL~~GGeLfd~i~~~  130 (382)
T KOG0032|consen   51 VYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYLVMELCEGGELFDRIVKK  130 (382)
T ss_pred             EEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEEEEEecCCchHHHHHHHc
Confidence            5788888867777766654443333333445677777777776 998874      445567899999999998877554


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC----CceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN----FFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~----~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                      .+++..+..++.|++.++.|||+   .+++||||||+|+|+...    +.++++|||++.....   .......+||+.|
T Consensus       131 ~~sE~da~~~~~~il~av~~lH~---~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~---~~~~~~~~Gtp~y  204 (382)
T KOG0032|consen  131 HYSERDAAGIIRQILEAVKYLHS---LGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKP---GERLHTIVGTPEY  204 (382)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHh---CCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccC---CceEeeecCCccc
Confidence            69999999999999999999999   999999999999999643    4799999999998765   2234567889999


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      +|||++...+|+..+|+||+|+++|.|+.|.+||......+
T Consensus       205 ~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~  245 (382)
T KOG0032|consen  205 VAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFE  245 (382)
T ss_pred             cCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhH
Confidence            99999999999999999999999999999999999887543

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.96  E-value=2.4e-30  Score=208.65  Aligned_cols=182  Identities=19%  Similarity=0.215  Sum_probs=135.8

Q ss_pred             CCcccc---CCCcceeehhhhchhhhhc-cCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhh
Q 044746            1 MEKPRN---RGSTRFITRTIDKSLDAME-MDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~---~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++++   ...+..+|.|+.+...... ......+..|..+.... +|++++.      ..+...++++++++++|..+
T Consensus        16 Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~   95 (332)
T cd05614          16 VFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTH   95 (332)
T ss_pred             EEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEEEEEEeCCCCCcHHHH
Confidence            465554   3466777777654432221 11222344454444444 4666542      34456689999999999887


Q ss_pred             hc-cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           70 CK-KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        70 ~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      +. ...+++.++..++.|++.||.|||+   .+++||||||+|||++.++.++|+|||+++........ ......||+.
T Consensus        96 l~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~~~-~~~~~~gt~~  171 (332)
T cd05614          96 LYQRDNFSEDEVRFYSGEIILALEHLHK---LGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKE-RTYSFCGTIE  171 (332)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHH---CCcEecCCCHHHeEECCCCCEEEeeCcCCccccccCCC-ccccccCCcc
Confidence            74 4569999999999999999999999   99999999999999999999999999999754322211 1223568999


Q ss_pred             ccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          149 CEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       149 y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      |+|||++.+. .++.++||||+||+++||++|+.||...
T Consensus       172 y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  210 (332)
T cd05614         172 YMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLE  210 (332)
T ss_pred             ccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCC
Confidence            9999998765 4788999999999999999999999754

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.96  E-value=6.4e-30  Score=206.24  Aligned_cols=178  Identities=19%  Similarity=0.252  Sum_probs=143.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++...+..++.|+.....  ......++..|.......+|++++.      ..+...++++++++++|..++.. .
T Consensus        21 V~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   98 (331)
T cd06649          21 VTKVQHKPSGLIMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEAK   98 (331)
T ss_pred             EEEEEECCCCcEEEEEEeeccc--CHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEeecCCCCcHHHHHHHcC
Confidence            6788888888888887754321  1112234666777778888898763      34456789999999999988865 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+.  .+++||||||+||+++.++.++|+|||++.......    .....|++.|+|||
T Consensus        99 ~~~~~~~~~~~~~i~~~l~~lH~~--~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~g~~~y~aPE  172 (331)
T cd06649          99 RIPEEILGKVSIAVLRGLAYLREK--HQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSPE  172 (331)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhhc--CCEEcCCCChhhEEEcCCCcEEEccCcccccccccc----cccCCCCcCcCCHh
Confidence            589999999999999999999981  469999999999999999999999999987543221    23345799999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      ++.+..++.++|+||+||++|||++|+.||...
T Consensus       173 ~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~  205 (331)
T cd06649         173 RLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPP  205 (331)
T ss_pred             HhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            999888999999999999999999999999654

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.96  E-value=1.5e-29  Score=199.28  Aligned_cols=155  Identities=19%  Similarity=0.283  Sum_probs=125.9

Q ss_pred             cCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeE
Q 044746           31 RFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKK--NILGFGQLREIEVSTSKGIAYLHEECRQKIV  103 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~ii  103 (202)
                      ++..+.......+|+|++.     .+....++++++.+|+|..++..  ..+++..+..++.|++.||.|||+   ++++
T Consensus        55 ~~~~~~~~l~~l~h~~iv~~~~~~~~~~~~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ii  131 (279)
T cd05111          55 EITDHMLAMGSLDHAYIVRLLGICPGASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEE---HRMV  131 (279)
T ss_pred             HHHHHHHHHhcCCCCCcceEEEEECCCccEEEEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH---CCEe
Confidence            3445555556778888763     23344578889999999998854  468999999999999999999999   9999


Q ss_pred             EecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCC
Q 044746          104 HYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRN  182 (202)
Q Consensus       104 Hrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p  182 (202)
                      ||||||+||+++.++.++|+|||+++...............++..|+|||.+.+..++.++|+||||+++||+++ |+.|
T Consensus       132 H~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p  211 (279)
T cd05111         132 HRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEP  211 (279)
T ss_pred             ccccCcceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999986543322222233445778999999988889999999999999999998 9999


Q ss_pred             Ccchhc
Q 044746          183 LEKEIS  188 (202)
Q Consensus       183 ~~~~~~  188 (202)
                      |.+..+
T Consensus       212 ~~~~~~  217 (279)
T cd05111         212 YAGMRP  217 (279)
T ss_pred             CCCCCH
Confidence            976543

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.96  E-value=1.5e-30  Score=214.48  Aligned_cols=182  Identities=19%  Similarity=0.303  Sum_probs=141.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc---c---ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV---G---SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~---~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      |||++.-+   -||+|+.....-. .++...|..|......-+|.||+   |   .-++ -++.-++++.+|+.+++-  
T Consensus       408 V~Rg~whG---dVAVK~Lnv~~pt-~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~-AIiTqwCeGsSLY~hlHv~e  482 (678)
T KOG0193|consen  408 VYRGRWHG---DVAVKLLNVDDPT-PEQLQAFKNEVAVLKKTRHENILLFMGACMNPPL-AIITQWCEGSSLYTHLHVQE  482 (678)
T ss_pred             eeeccccc---ceEEEEEecCCCC-HHHHHHHHHHHHHHhhcchhhheeeehhhcCCce-eeeehhccCchhhhhccchh
Confidence            45555433   3666655443222 23677899999888888999987   2   2222 577888999999998854  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      .+|.....+.|++|++.|+.|||+   ++|||||||..||++..++.+||+|||++..-.......-.....|...||||
T Consensus       483 tkfdm~~~idIAqQiaqGM~YLHA---K~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAP  559 (678)
T KOG0193|consen  483 TKFDMNTTIDIAQQIAQGMDYLHA---KNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAP  559 (678)
T ss_pred             hhhhHHHHHHHHHHHHHhhhhhhh---hhhhhhhccccceEEccCCcEEEecccceeeeeeeccccccCCCccchhhhcH
Confidence            458889999999999999999999   99999999999999999999999999999754333222223334568899999


Q ss_pred             cccC---CCCCCchhhHHHHHHHHHHHHcCCCCCcchhcccc
Q 044746          153 ELWM---PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQ  191 (202)
Q Consensus       153 e~~~---~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~~  191 (202)
                      |+++   ..+|+.++||||||+++|||++|..||. ....++
T Consensus       560 EvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPys-i~~~dq  600 (678)
T KOG0193|consen  560 EVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYS-IQNRDQ  600 (678)
T ss_pred             HHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcC-CCChhh
Confidence            9986   4589999999999999999999999999 444433

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.96  E-value=8.5e-30  Score=223.98  Aligned_cols=184  Identities=17%  Similarity=0.194  Sum_probs=143.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++...++.||.|..+...........+|..|.......+|++++.      .++...++++++++++|..++..  
T Consensus        18 VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVMEY~eGGSL~~lL~s~~   97 (932)
T PRK13184         18 VYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTMPYIEGYTLKSLLKSVW   97 (932)
T ss_pred             EEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEEEcCCCCCHHHHHHHhh
Confidence            6889888888888877654322211122345777777888888998763      34456788999999999887642  


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc------
Q 044746           73 ----------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT------  136 (202)
Q Consensus        73 ----------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~------  136 (202)
                                ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++++|||+++.......      
T Consensus        98 ~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs---~GIIHRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~  174 (932)
T PRK13184         98 QKESLSKELAEKTSVGAFLSIFHKICATIEYVHS---KGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDID  174 (932)
T ss_pred             hccccchhhhcccCHHHHHHHHHHHHHHHHHHHH---CCccccCCchheEEEcCCCCEEEEecCcceecccccccccccc
Confidence                      235667889999999999999999   9999999999999999999999999999986521100      


Q ss_pred             ----------ccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          137 ----------HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       137 ----------~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                                ........||+.|+|||.+.+..++.++|+||+||+++||+||+.||....
T Consensus       175 ~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~  235 (932)
T PRK13184        175 VDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKK  235 (932)
T ss_pred             cccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcc
Confidence                      001122468999999999999899999999999999999999999997644

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.96  E-value=1.3e-29  Score=207.71  Aligned_cols=112  Identities=24%  Similarity=0.403  Sum_probs=94.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.++..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||+++...............++..|+|||
T Consensus       208 ~l~~~~~~~i~~qi~~aL~yLH~---~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE  284 (374)
T cd05106         208 PLDLDDLLRFSSQVAQGMDFLAS---KNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPE  284 (374)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHH---CCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHH
Confidence            37888999999999999999999   999999999999999999999999999997654332211122233467899999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ++....++.++|+||+||++|||++ |+.||.....
T Consensus       285 ~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~  320 (374)
T cd05106         285 SIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILV  320 (374)
T ss_pred             HhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccc
Confidence            9988889999999999999999997 9999976543

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.96  E-value=2e-29  Score=204.13  Aligned_cols=176  Identities=20%  Similarity=0.259  Sum_probs=136.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc------------cceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED------------TETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------~~~~~~~~~~~~~l~~   68 (202)
                      ||++.+..+++.||.|..+.... .......+..|.......+|++++...+            ...++++ ..+++|..
T Consensus        31 V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~  108 (343)
T cd07878          31 VCSAYDTRLRQKVAVKKLSRPFQ-SLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENFNEVYLVTN-LMGADLNN  108 (343)
T ss_pred             EEEEEECCCCCEEEEEEeCchhh-hhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccccCcEEEEee-cCCCCHHH
Confidence            68888887888787776433211 1112233445667777788888764221            1223333 44778888


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      +.....+++..+..++.|++.||.|||+   ++|+||||||+||+++.++.+||+|||+++.....     .....||+.
T Consensus       109 ~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~t~~  180 (343)
T cd07878         109 IVKCQKLSDEHVQFLIYQLLRGLKYIHS---AGIIHRDLKPSNVAVNEDCELRILDFGLARQADDE-----MTGYVATRW  180 (343)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCeecccCChhhEEECCCCCEEEcCCccceecCCC-----cCCcccccc
Confidence            8888889999999999999999999999   99999999999999999999999999999865432     233467999


Q ss_pred             ccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          149 CEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       149 y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      |+|||++.+ ..++.++||||+||++++|++|+.||...
T Consensus       181 y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  219 (343)
T cd07878         181 YRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGN  219 (343)
T ss_pred             ccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCC
Confidence            999999876 46889999999999999999999999754

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=2.9e-29  Score=210.06  Aligned_cols=172  Identities=19%  Similarity=0.208  Sum_probs=135.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc------cccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS------EDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++...++.|+.|...         ...+..|..++...+|+|++..      ++...++++++. ++|..++..  
T Consensus       185 Vy~a~~~~~~~~vavK~~~---------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~  254 (461)
T PHA03211        185 VFESSHPDYPQRVVVKAGW---------YASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYR-SDLYTYLGARL  254 (461)
T ss_pred             EEEEEECCCCCEEEEeccc---------ccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccC-CCHHHHHHhcC
Confidence            6788888888878777421         1234467777888899988742      334456666664 567666643  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++.++..++.|++.||.|||+   .+|+||||||+|||++.++.++|+|||+++...............||+.|+||
T Consensus       255 ~~l~~~~~~~i~~qi~~aL~yLH~---~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~AP  331 (461)
T PHA03211        255 RPLGLAQVTAVARQLLSAIDYIHG---EGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAP  331 (461)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCEEECcCCHHHEEECCCCCEEEcccCCceecccccccccccccCCCcCCcCH
Confidence            369999999999999999999999   99999999999999999999999999999865433222222345689999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      |++.+..++.++|||||||++|||++|..|+..
T Consensus       332 E~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~  364 (461)
T PHA03211        332 EVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFS  364 (461)
T ss_pred             HHHcCCCCCchHHHHHHHHHHHHHHHcCCCccc
Confidence            999998999999999999999999998876543

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.96  E-value=2.3e-29  Score=198.95  Aligned_cols=181  Identities=18%  Similarity=0.187  Sum_probs=141.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++...++.+|.|...............+..|.......+|++++.      .++...++++++.+++|...+..  
T Consensus        16 vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~   95 (285)
T cd05632          16 VCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMG   95 (285)
T ss_pred             EEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEeccCccHHHHHHHhc
Confidence            5778887777777777654332222222233445656666777777652      34556788999999998776632  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       ..+++..+..++.|++.||.|||+   ++|+||||||+||+++.++.++|+|||++........   .....|+..|+|
T Consensus        96 ~~~~~~~~~~~~~~ql~~~l~~lH~---~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~---~~~~~g~~~~~a  169 (285)
T cd05632          96 NPGFEEERALFYAAEILCGLEDLHR---ENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGES---IRGRVGTVGYMA  169 (285)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCCHHHEEECCCCCEEEecCCcceecCCCCc---ccCCCCCcCccC
Confidence             359999999999999999999999   9999999999999999999999999999876433221   133467999999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ||++.+..++.++|+||+|++++|+++|+.||....
T Consensus       170 PE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~  205 (285)
T cd05632         170 PEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRK  205 (285)
T ss_pred             hHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCC
Confidence            999988889999999999999999999999997654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.96  E-value=2.3e-29  Score=199.01  Aligned_cols=180  Identities=20%  Similarity=0.240  Sum_probs=140.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++.+...++.++.|...............+..|..+....+|++++.      ..+...++++++++++|..++..  
T Consensus        16 v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~   95 (285)
T cd05630          16 VCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMG   95 (285)
T ss_pred             EEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEecCCCcHHHHHHHhc
Confidence            5778888777777776543322111111223445666667777877652      34556788999999999877632  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++........   .....|++.|+|
T Consensus        96 ~~~l~~~~~~~~~~qi~~~l~~lH~---~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~---~~~~~g~~~y~a  169 (285)
T cd05630          96 EAGFEEGRAVFYAAEICCGLEDLHQ---ERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT---IKGRVGTVGYMA  169 (285)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHEEECCCCCEEEeeccceeecCCCcc---ccCCCCCccccC
Confidence             358999999999999999999999   9999999999999999999999999999875432221   123467999999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      ||++.+..++.++|+||+|+++++|++|+.||...
T Consensus       170 PE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~  204 (285)
T cd05630         170 PEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQR  204 (285)
T ss_pred             hHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCC
Confidence            99999888999999999999999999999999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.96  E-value=1.6e-29  Score=211.10  Aligned_cols=174  Identities=19%  Similarity=0.182  Sum_probs=132.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc--------------ccceEEEEEccCCch
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE--------------DTETYIKGFLAMGPF   66 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------------~~~~~~~~~~~~~~l   66 (202)
                      ||++++...++.||.|.....       ......|..+....+|++++...              .+..++++++++ ++
T Consensus        82 Vy~~~~~~~~~~vAiK~i~~~-------~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~lvmE~~~~-~l  153 (440)
T PTZ00036         82 VYEAICIDTSEKVAIKKVLQD-------PQYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLNVVMEFIPQ-TV  153 (440)
T ss_pred             EEEEEECCCCCEEEEEEEecC-------cchHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEEEEEecCCc-cH
Confidence            688888877777777643221       11123466677788899887421              123467788775 45


Q ss_pred             hhhh-----ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC-ceEEeeeecceeccccCccccc
Q 044746           67 YLLC-----KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF-FPKAADFGLAKLYNREHTHITS  140 (202)
Q Consensus        67 ~~~~-----~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~-~~kl~dfgl~~~~~~~~~~~~~  140 (202)
                      ..++     ....+++..+..++.|++.||.|||+   .+|+||||||+||+++.++ .+||+|||+++.......   .
T Consensus       154 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~---~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~~~~---~  227 (440)
T PTZ00036        154 HKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHS---KFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQR---S  227 (440)
T ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCcCHHHEEEcCCCCceeeeccccchhccCCCC---c
Confidence            4443     24569999999999999999999999   9999999999999998664 799999999986543221   2


Q ss_pred             CCCCCCCcccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          141 TGRRRTPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       141 ~~~~gt~~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ....||+.|+|||++.+. .++.++||||+||++|||++|.+||.+...
T Consensus       228 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~  276 (440)
T PTZ00036        228 VSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSS  276 (440)
T ss_pred             ccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh
Confidence            234568999999998764 689999999999999999999999987543

>PHA02988 hypothetical protein; Provisional

Probab=99.96  E-value=6.8e-30  Score=201.97  Aligned_cols=179  Identities=15%  Similarity=0.096  Sum_probs=138.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc----------ccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE----------DTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----------~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++..  .++.||.|..+............|..|.......+|+|++...          ....++++++.+|+|..++
T Consensus        36 v~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~~~g~L~~~l  113 (283)
T PHA02988         36 IYKGIF--NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVL  113 (283)
T ss_pred             EEEEEE--CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeCCCCcHHHHH
Confidence            455655  3445665554333222211134566777888888999876422          2456899999999999988


Q ss_pred             ccC-CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           71 KKN-ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        71 ~~~-~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                      ... .+++.....++.+++.|+.|||+.  .+++||||||+||+++.++.+|++|||+++......     ....|+..|
T Consensus       114 ~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~y  186 (283)
T PHA02988        114 DKEKDLSFKTKLDMAIDCCKGLYNLYKY--TNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPP-----FKNVNFMVY  186 (283)
T ss_pred             hhCCCCChhHHHHHHHHHHHHHHHHHhc--CCCCCCcCChhhEEECCCCcEEEcccchHhhhcccc-----ccccCcccc
Confidence            654 589999999999999999999972  488899999999999999999999999987653321     223568899


Q ss_pred             cCCcccCC--CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          150 EAPELWMP--YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       150 ~aPe~~~~--~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +|||++.+  ..++.++|||||||++|||++|+.||.....
T Consensus       187 ~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~  227 (283)
T PHA02988        187 FSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTT  227 (283)
T ss_pred             cCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCH
Confidence            99999976  6789999999999999999999999986543

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.96  E-value=3.6e-30  Score=208.61  Aligned_cols=152  Identities=22%  Similarity=0.324  Sum_probs=131.1

Q ss_pred             CcHHHHHHhcccccccc-------ccccceEEEEEccCCchhhhhccC---CCCHHHHHHHHHHHHHHHHHHHhCCCCCe
Q 044746           33 TSPQRMIAADNFSNLVG-------SEDTETYIKGFLAMGPFYLLCKKN---ILGFGQLREIEVSTSKGIAYLHEECRQKI  102 (202)
Q Consensus        33 ~~~~~~~~~~~~~~~i~-------~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~~~~i  102 (202)
                      ..|..+.....||+++.       .+....++++|++||++.+.++..   .++++.+..++.|++.|+.|||+   ++|
T Consensus        51 ~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~---~~i  127 (426)
T KOG0589|consen   51 IQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHE---NRV  127 (426)
T ss_pred             HHHHHHHHhccCCCeeeeccchhcCCceEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh---hhh
Confidence            34444556688998874       444478999999999998888543   48999999999999999999998   999


Q ss_pred             EEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCC
Q 044746          103 VHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRN  182 (202)
Q Consensus       103 iHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p  182 (202)
                      +|||||+.||++..++.++|+|||+|+.++.+..  ......||+.||+||++.+.+|+.|+||||+||++|||++-+++
T Consensus       128 LHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~--~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~a  205 (426)
T KOG0589|consen  128 LHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDS--LASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPA  205 (426)
T ss_pred             hcccchhhhhhccccCceeecchhhhhhcCCchh--hhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccc
Confidence            9999999999999999999999999998776542  23457889999999999999999999999999999999999999


Q ss_pred             Ccchhcc
Q 044746          183 LEKEISE  189 (202)
Q Consensus       183 ~~~~~~~  189 (202)
                      |...+..
T Consensus       206 F~a~~m~  212 (426)
T KOG0589|consen  206 FKASNMS  212 (426)
T ss_pred             cCccchH
Confidence            9876544

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.96  E-value=1.4e-29  Score=206.26  Aligned_cols=178  Identities=16%  Similarity=0.151  Sum_probs=136.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc------------ccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE------------DTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------~~~~~~~~~~~~~~l~~   68 (202)
                      ||++++...+..+|.|+..... .......++..|.......+|++++...            ....++++++.++ +..
T Consensus        37 V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~-l~~  114 (359)
T cd07876          37 VCAAFDTVLGINVAVKKLSRPF-QNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDAN-LCQ  114 (359)
T ss_pred             EEEEEEcCCCceeEEEEecccc-cchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccceeEEEEeCCCcC-HHH
Confidence            6788888878878777643321 1122233455667777788899876322            1235777887654 444


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      ... ..++...+..++.|++.||.|||+   ++|+||||||+||+++.++.++|+|||+++......   ......||+.
T Consensus       115 ~~~-~~~~~~~~~~~~~qi~~~L~~LH~---~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~t~~  187 (359)
T cd07876         115 VIH-MELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNF---MMTPYVVTRY  187 (359)
T ss_pred             HHh-ccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEEecCCCccccccCc---cCCCCcccCC
Confidence            443 358899999999999999999999   999999999999999999999999999997543221   1233467899


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |+|||++.+..++.++|+||+||++|+|++|+.||....
T Consensus       188 y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~  226 (359)
T cd07876         188 YRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTD  226 (359)
T ss_pred             CCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC
Confidence            999999999899999999999999999999999997554

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>PTZ00284 protein kinase; Provisional

Probab=99.96  E-value=9.2e-30  Score=214.17  Aligned_cols=176  Identities=15%  Similarity=0.184  Sum_probs=125.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcc------ccccc---c----ccccceEEEEEccCCchh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADN------FSNLV---G----SEDTETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i---~----~~~~~~~~~~~~~~~~l~   67 (202)
                      ||++.+...++.||+|+.+.......    .+..|........      +.+++   +    ..+..+++++++ ++.|.
T Consensus       145 V~~a~~~~~~~~vAvK~i~~~~~~~~----~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~~~~iv~~~~-g~~l~  219 (467)
T PTZ00284        145 VVEAWDRKRKEYCAVKIVRNVPKYTR----DAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHMCIVMPKY-GPCLL  219 (467)
T ss_pred             EEEEEEcCCCeEEEEEEEecchhhHH----HHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCceEEEEEecc-CCCHH
Confidence            78899988889999887643221111    1111222222221      11222   1    122344555544 55666


Q ss_pred             hhh-ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC----------------ceEEeeeeccee
Q 044746           68 LLC-KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF----------------FPKAADFGLAKL  130 (202)
Q Consensus        68 ~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~----------------~~kl~dfgl~~~  130 (202)
                      .++ +.+.+++..+..++.|++.||.|||+.  .+||||||||+|||++.++                .+||+|||.+..
T Consensus       220 ~~l~~~~~l~~~~~~~i~~qi~~aL~yLH~~--~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~  297 (467)
T PTZ00284        220 DWIMKHGPFSHRHLAQIIFQTGVALDYFHTE--LHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCD  297 (467)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHHHhc--CCeecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCcccc
Confidence            655 456799999999999999999999971  4999999999999998655                489999998753


Q ss_pred             ccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          131 YNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       131 ~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ...     ......||+.|+|||++.+..++.++|||||||++|||++|++||.....
T Consensus       298 ~~~-----~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~  350 (467)
T PTZ00284        298 ERH-----SRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDN  350 (467)
T ss_pred             Ccc-----ccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh
Confidence            221     12345679999999999999999999999999999999999999976554

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.96  E-value=2.1e-29  Score=198.24  Aligned_cols=182  Identities=19%  Similarity=0.247  Sum_probs=136.3

Q ss_pred             CCccccCCCcce----eehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRF----ITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||+++....+..    ||.|+.+...  .......+..+.......+|++++.     ......++++++++|+|..++.
T Consensus        23 vy~~~~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~l~~~~~~~g~l~~~l~  100 (279)
T cd05109          23 VYKGIWIPDGENVKIPVAIKVLRENT--SPKANKEILDEAYVMAGVGSPYVCRLLGICLTSTVQLVTQLMPYGCLLDYVR  100 (279)
T ss_pred             EEEEEEecCCCccceEEEEEEecCCC--CHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCCCcEEEEEcCCCCCHHHHHh
Confidence            577765444442    4555433211  1111234555666666677787652     2344568888999999998885


Q ss_pred             c--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           72 K--NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        72 ~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                      .  ..+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||+++...............+++.|
T Consensus       101 ~~~~~~~~~~~~~~~~qi~~~L~~lH~---~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y  177 (279)
T cd05109         101 ENKDRIGSQDLLNWCVQIAKGMSYLEE---VRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKW  177 (279)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccccceEEEcCCCcEEECCCCceeecccccceeecCCCccchhh
Confidence            4  358999999999999999999999   99999999999999999999999999999876433322222223346789


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      +|||.+.+..++.++|+|||||++||+++ |.+||....
T Consensus       178 ~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~  216 (279)
T cd05109         178 MALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIP  216 (279)
T ss_pred             CCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCC
Confidence            99999988889999999999999999998 999997543

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.96  E-value=1.4e-29  Score=207.23  Aligned_cols=183  Identities=20%  Similarity=0.266  Sum_probs=136.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc------c-----cceEEEEEccCCchhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE------D-----TETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~-----~~~~~~~~~~~~~l~~~   69 (202)
                      ||++++...++.||.|....... ......++..|..+....+|+|++...      .     ...++++++.+ +|...
T Consensus        16 V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~   93 (372)
T cd07853          16 VWSVTDPRDGKRVALKKMPNVFQ-NLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIYVVTELMQS-DLHKI   93 (372)
T ss_pred             EEEEEECCCCCEEEEEecccccc-chHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEEEEeecccc-CHHHH
Confidence            68888877777777665432111 111223455666677778888876321      1     34577777764 45544


Q ss_pred             h-ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           70 C-KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        70 ~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      . ....+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++....... .......+++.
T Consensus        94 ~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~-~~~~~~~~~~~  169 (372)
T cd07853          94 IVSPQPLSSDHVKVFLYQILRGLKYLHS---AGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDES-KHMTQEVVTQY  169 (372)
T ss_pred             HhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChHHEEECCCCCEEeccccceeecccCcc-ccCCCCCcCCC
Confidence            4 45679999999999999999999999   9999999999999999999999999999986433221 11233456889


Q ss_pred             ccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          149 CEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       149 y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |+|||++.+. .++.++|+||+||+++||++|++||....+.
T Consensus       170 y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~  211 (372)
T cd07853         170 YRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPI  211 (372)
T ss_pred             cCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHH
Confidence            9999998774 4789999999999999999999999866543

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=9.1e-30  Score=211.30  Aligned_cols=181  Identities=19%  Similarity=0.216  Sum_probs=150.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh--cc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC--KK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~--~~   72 (202)
                      ||||.++..+.++|.|+-   +..+.+....|..|.-+++..+||++++      ..+-.++..+|+.||-+..++  -.
T Consensus        48 VyKA~nket~~lAAaKvI---etkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~GGAVDaimlEL~  124 (1187)
T KOG0579|consen   48 VYKAVNKETKLLAAAKVI---ETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGGGAVDAIMLELG  124 (1187)
T ss_pred             hhhhhcccchhhhhhhhh---cccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCCchHhHHHHHhc
Confidence            799999988888888763   3334455667888999999999999886      334466889999999876655  34


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      +.+++.++.-++.|++.||.|||+   +.|||||||..|||+..+|.++|+|||++........  ......|||+||||
T Consensus       125 r~LtE~QIqvvc~q~ldALn~LHs---~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~q--kRDsFIGTPYWMAP  199 (1187)
T KOG0579|consen  125 RVLTEDQIQVVCYQVLDALNWLHS---QNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQ--KRDSFIGTPYWMAP  199 (1187)
T ss_pred             cccchHHHHHHHHHHHHHHHHHhh---cchhhhhccccceEEEecCcEeeecccccccchhHHh--hhccccCCcccccc
Confidence            679999999999999999999999   9999999999999999999999999999864332222  23457899999999


Q ss_pred             cccCC-----CCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          153 ELWMP-----YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       153 e~~~~-----~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |+..+     .+|+.++||||||++|.||..+.||-..-+++
T Consensus       200 EVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpM  241 (1187)
T KOG0579|consen  200 EVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPM  241 (1187)
T ss_pred             hheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchH
Confidence            99764     58999999999999999999999998766654

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.96  E-value=2e-30  Score=208.00  Aligned_cols=182  Identities=23%  Similarity=0.256  Sum_probs=140.8

Q ss_pred             CCcccc---CCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRN---RGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++++   ...+..+|.|+.+..... .....++..|.......+|++++.      ..+..+++++++++++|..++.
T Consensus        12 Vy~~~~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~   90 (318)
T cd05582          12 VFLVRKITGPDAGQLYAMKVLKKATLK-VRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLS   90 (318)
T ss_pred             EEEEEEeccCCCCCEEEEEEEEHHHhh-hhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCCCCcHHHHHH
Confidence            455554   345667777665433221 112233455666777788888763      3445668899999999988875


Q ss_pred             c-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           72 K-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        72 ~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      . ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++........  ......|++.|+
T Consensus        91 ~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~g~~~y~  165 (318)
T cd05582          91 KEVMFTEEDVKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK--KAYSFCGTVEYM  165 (318)
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCC--ceecccCChhhc
Confidence            4 458999999999999999999999   9999999999999999999999999999875433211  123356799999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |||.+.+..++.++|+||+||++|||++|+.||.....
T Consensus       166 aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~  203 (318)
T cd05582         166 APEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDR  203 (318)
T ss_pred             CHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCH
Confidence            99999988889999999999999999999999976543

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=4.5e-30  Score=214.81  Aligned_cols=179  Identities=20%  Similarity=0.190  Sum_probs=141.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc------cccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV------GSEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||-+|+.....-+|.|--..   ........+-.|..+-.+..|.||+      +++++..++|+..+||+|..++..  
T Consensus       591 VYA~RD~~tqvrIaIKEIpe---kdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLSsLLrskW  667 (1226)
T KOG4279|consen  591 VYAARDMDTQVRIAIKEIPE---KDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLSSLLRSKW  667 (1226)
T ss_pred             EEeeccccceeEEEeeeccc---ccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHHHHHHhcc
Confidence            67888888877777653222   2222233455566666778888876      466777789999999999998865  


Q ss_pred             CCC--CHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc-CCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           73 NIL--GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD-ENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        73 ~~~--~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~-~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                      +++  .+...-.+.+||++||.|||+   +.|+|||||.+|+|+. -.|.+|++|||.++.+..-...  .....||..|
T Consensus       668 GPlKDNEstm~fYtkQILeGLkYLHe---n~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~--TETFTGTLQY  742 (1226)
T KOG4279|consen  668 GPLKDNESTMNFYTKQILEGLKYLHE---NKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPC--TETFTGTLQY  742 (1226)
T ss_pred             CCCccchhHHHHHHHHHHHHhhhhhh---cceeeccccCCcEEEeeccceEEecccccchhhccCCcc--ccccccchhh
Confidence            345  778889999999999999999   9999999999999997 4799999999999866432222  2446689999


Q ss_pred             cCCcccCCC--CCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          150 EAPELWMPY--SVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       150 ~aPe~~~~~--~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ||||++..+  .|+.++|||||||++.||.||+|||....
T Consensus       743 MAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~Elg  782 (1226)
T KOG4279|consen  743 MAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELG  782 (1226)
T ss_pred             hChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecC
Confidence            999999754  68899999999999999999999997443

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.96  E-value=2.9e-29  Score=197.58  Aligned_cols=156  Identities=20%  Similarity=0.306  Sum_probs=126.3

Q ss_pred             ccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-----------------CCCCHHHHHHHHHH
Q 044746           30 IRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-----------------NILGFGQLREIEVS   86 (202)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-----------------~~~~~~~~~~~~~~   86 (202)
                      ..|..|.......+|++++.      .....+++++++++++|..++..                 ..+++..+..++.|
T Consensus        53 ~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  132 (283)
T cd05048          53 QEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQ  132 (283)
T ss_pred             HHHHHHHHHHHhcCCcccceEEEEEcCCCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHH
Confidence            34666666677778887653      33446688899999999888743                 45788999999999


Q ss_pred             HHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhH
Q 044746           87 TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDV  166 (202)
Q Consensus        87 i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Di  166 (202)
                      ++.||.|||+   ++++|+||||+||+++.++.++|+|||+++...............+++.|+|||.+....++.++|+
T Consensus       133 l~~al~~lH~---~~i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv  209 (283)
T cd05048         133 IAAGMEYLSS---HHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDI  209 (283)
T ss_pred             HHHHHHHHHh---CCeeccccccceEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhH
Confidence            9999999999   9999999999999999999999999999986533222222233445788999999988889999999


Q ss_pred             HHHHHHHHHHHc-CCCCCcchhc
Q 044746          167 FSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       167 ws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |||||+++||++ |..||.+...
T Consensus       210 ~slG~il~el~~~g~~p~~~~~~  232 (283)
T cd05048         210 WSFGVVLWEIFSYGLQPYYGFSN  232 (283)
T ss_pred             HHHHHHHHHHHcCCCCCCCCCCH
Confidence            999999999998 9999976443

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.9e-29  Score=202.21  Aligned_cols=134  Identities=25%  Similarity=0.321  Sum_probs=117.8

Q ss_pred             cccccceEEEEEccCCchhhhhcc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeee
Q 044746           49 GSEDTETYIKGFLAMGPFYLLCKK---NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF  125 (202)
Q Consensus        49 ~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~df  125 (202)
                      ...+-.++++..|+||.|.-++..   ..+++..++.++.+|+.||++||.   .+|+.|||||+|||+|..|+++|+|+
T Consensus       255 eTkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~---~~iVYRDLKPeNILLDd~GhvRISDL  331 (591)
T KOG0986|consen  255 ETKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHR---RRIVYRDLKPENILLDDHGHVRISDL  331 (591)
T ss_pred             cCCCceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHh---cceeeccCChhheeeccCCCeEeecc
Confidence            456667899999999998655532   359999999999999999999999   99999999999999999999999999


Q ss_pred             ecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       126 gl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |||..+.....   ..+.+||.+|||||++....|+..+|+||+||++|||+.|+.||.....
T Consensus       332 GLAvei~~g~~---~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~Ke  391 (591)
T KOG0986|consen  332 GLAVEIPEGKP---IRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKE  391 (591)
T ss_pred             ceEEecCCCCc---cccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhh
Confidence            99987655443   3556899999999999998999999999999999999999999976543

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.96  E-value=2e-29  Score=205.81  Aligned_cols=178  Identities=17%  Similarity=0.172  Sum_probs=136.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc------------cceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED------------TETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------~~~~~~~~~~~~~l~~   68 (202)
                      ||++.+...++.+|.|...... .......++..|.......+|++++...+            ...++++++.+ ++..
T Consensus        40 V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~  117 (364)
T cd07875          40 VCAAYDAILERNVAIKKLSRPF-QNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDA-NLCQ  117 (364)
T ss_pred             EEEEEECCCCcEEEEEEeCccc-cCchhHHHHHHHHHHHHhcCCCCccccceeecccccccccCeEEEEEeCCCC-CHHH
Confidence            5778887777777776543321 11122334555666777788898764321            23577788765 4555


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      ... ..+++..+..++.|++.||.|||+   ++|+||||||+||+++.++.++|+|||+++.......   .....||+.
T Consensus       118 ~~~-~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~---~~~~~~t~~  190 (364)
T cd07875         118 VIQ-MELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM---MTPYVVTRY  190 (364)
T ss_pred             HHH-hcCCHHHHHHHHHHHHHHHHHHhh---CCeecCCCCHHHEEECCCCcEEEEeCCCccccCCCCc---ccCCcccCC
Confidence            443 358899999999999999999999   9999999999999999999999999999986543221   233457999


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |+|||++.+..++.++|+||+||++|+|++|+.||....
T Consensus       191 y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~  229 (364)
T cd07875         191 YRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTD  229 (364)
T ss_pred             cCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCC
Confidence            999999999899999999999999999999999997654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.96  E-value=3.1e-29  Score=197.95  Aligned_cols=180  Identities=22%  Similarity=0.290  Sum_probs=133.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHH---Hhcccccccccc-----------ccceEEEEEccCCch
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMI---AADNFSNLVGSE-----------DTETYIKGFLAMGPF   66 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~-----------~~~~~~~~~~~~~~l   66 (202)
                      ||++++..+++.++.|..+...... .....+..|....   ...+|+|++...           ....++++++.+ ++
T Consensus        16 v~~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l   93 (288)
T cd07863          16 VYKARDPHSGHFVALKSVRVQTNED-GLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETKVTLVFEHVDQ-DL   93 (288)
T ss_pred             EEEEEECCCCcEEEEEEeccCcCCC-CCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCceEEEEEccccc-CH
Confidence            6889998888888877654321111 1111222232222   234678776322           224567777764 66


Q ss_pred             hhhhcc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCC
Q 044746           67 YLLCKK---NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGR  143 (202)
Q Consensus        67 ~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~  143 (202)
                      ..++..   ..+++.++..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++.......   ....
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~~~~~---~~~~  167 (288)
T cd07863          94 RTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHA---NCIVHRDLKPENILVTSGGQVKLADFGLARIYSCQMA---LTPV  167 (288)
T ss_pred             HHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEECccCccccccCccc---CCCc
Confidence            665543   348999999999999999999999   9999999999999999999999999999986543221   2234


Q ss_pred             CCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .|++.|+|||++.+..++.++|+||+||++++|++|++||.....
T Consensus       168 ~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~  212 (288)
T cd07863         168 VVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSE  212 (288)
T ss_pred             cccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCH
Confidence            568899999999888899999999999999999999999976543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=5.6e-29  Score=205.12  Aligned_cols=151  Identities=22%  Similarity=0.277  Sum_probs=122.2

Q ss_pred             CcHHHHHHhccccccccc------cccceEEEEEccCCchhhhh-ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEe
Q 044746           33 TSPQRMIAADNFSNLVGS------EDTETYIKGFLAMGPFYLLC-KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHY  105 (202)
Q Consensus        33 ~~~~~~~~~~~~~~~i~~------~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHr  105 (202)
                      ..|..+....+|++++..      ....+++++++. +++..++ ....+++.++..++.|++.||.|||+   .+|+||
T Consensus       134 ~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~l~~~~~~~i~~ql~~aL~~LH~---~givHr  209 (392)
T PHA03207        134 GREIDILKTISHRAIINLIHAYRWKSTVCMVMPKYK-CDLFTYVDRSGPLPLEQAITIQRRLLEALAYLHG---RGIIHR  209 (392)
T ss_pred             HHHHHHHHhcCCCCccceeeeEeeCCEEEEEehhcC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCcccc
Confidence            456667777888887642      233445666665 4565555 34579999999999999999999999   999999


Q ss_pred             cCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          106 DIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       106 dlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      ||||+||+++.++.++|+|||++................||+.|+|||++.+..++.++||||+||++|||++|+.||.+
T Consensus       210 Dlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~  289 (392)
T PHA03207        210 DVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFG  289 (392)
T ss_pred             CCCHHHEEEcCCCCEEEccCccccccCcccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence            99999999999999999999999765443322223345689999999999988999999999999999999999999976


Q ss_pred             hh
Q 044746          186 EI  187 (202)
Q Consensus       186 ~~  187 (202)
                      ..
T Consensus       290 ~~  291 (392)
T PHA03207        290 KQ  291 (392)
T ss_pred             CC
Confidence            54

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.96  E-value=6.7e-29  Score=198.81  Aligned_cols=178  Identities=19%  Similarity=0.240  Sum_probs=129.3

Q ss_pred             CCccccCC--CcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRG--STRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++++..  .++.++.|.....     .....+..|..+....+|+|++..        ....++++++.. +++..++
T Consensus        17 Vy~~~~~~~~~~~~~aiK~~~~~-----~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~   90 (317)
T cd07868          17 VYKAKRKDGKDDRDYALKQIEGT-----GISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE-HDLWHII   90 (317)
T ss_pred             EEEEEEccCCCCceEEEEEECCC-----CCcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC-CCHHHHH
Confidence            67777543  4455555543221     111234457777788899988642        222345666655 4555544


Q ss_pred             c----------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEE----cCCCceEEeeeecceeccccCc
Q 044746           71 K----------KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL----DENFFPKAADFGLAKLYNREHT  136 (202)
Q Consensus        71 ~----------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~----~~~~~~kl~dfgl~~~~~~~~~  136 (202)
                      .          ...++...++.++.|++.||.|||+   .+++||||||+|||+    +..+.+||+|||+++.......
T Consensus        91 ~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~  167 (317)
T cd07868          91 KFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLK  167 (317)
T ss_pred             HhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHh---CCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCc
Confidence            2          1248899999999999999999999   999999999999999    4567899999999986543322


Q ss_pred             c-cccCCCCCCCcccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          137 H-ITSTGRRRTPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       137 ~-~~~~~~~gt~~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      . .......||+.|+|||++.+. .++.++|+||+||+++||++|++||....
T Consensus       168 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~  220 (317)
T cd07868         168 PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQ  220 (317)
T ss_pred             cccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCCc
Confidence            1 122345679999999998764 58899999999999999999999997544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.96  E-value=4.9e-29  Score=204.38  Aligned_cols=176  Identities=19%  Similarity=0.295  Sum_probs=133.2

Q ss_pred             CCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhccC------
Q 044746            7 RGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN------   73 (202)
Q Consensus         7 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~------   73 (202)
                      ...+..||+|+.+.....  .....+..|..+.... +|+|++.      .++...++++++++|+|..++...      
T Consensus        62 ~~~~~~vavK~l~~~~~~--~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~  139 (375)
T cd05104          62 SDAAMTVAVKMLKPSAHL--TEREALMSELKVLSYLGNHINIVNLLGACTVGGPTLVITEYCCYGDLLNFLRRKRDSFIC  139 (375)
T ss_pred             CccceeEEEEeccCCcCc--HHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCcceeeehhccCCcHHHHHHhccccccc
Confidence            445556777765432211  1123455565555555 7888764      445567899999999988776421      


Q ss_pred             ----------------------------------------------------------------------CCCHHHHHHH
Q 044746           74 ----------------------------------------------------------------------ILGFGQLREI   83 (202)
Q Consensus        74 ----------------------------------------------------------------------~~~~~~~~~~   83 (202)
                                                                                            .+++..+..+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  219 (375)
T cd05104         140 PKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYIDQDVTSEILEEDELALDTEDLLSF  219 (375)
T ss_pred             ccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccceecccccHHHHHhccCCCCCHHHHHHH
Confidence                                                                                  4788889999


Q ss_pred             HHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCch
Q 044746           84 EVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQK  163 (202)
Q Consensus        84 ~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~  163 (202)
                      +.|++.||.|||+   ++++||||||+||+++.++.++|+|||+++...............++..|+|||.+.+..++.+
T Consensus       220 ~~qi~~~l~~lH~---~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  296 (375)
T cd05104         220 SYQVAKGMSFLAS---KNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFE  296 (375)
T ss_pred             HHHHHHHHHHHHH---CCeeccCCchhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcceeChhHhcCCCCCCC
Confidence            9999999999999   9999999999999999999999999999986543322222222334678999999998899999


Q ss_pred             hhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          164 CDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       164 ~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      +|+||||++++||++ |..||....
T Consensus       297 sDi~slG~~l~ellt~g~~p~~~~~  321 (375)
T cd05104         297 SDVWSYGILLWEIFSLGSSPYPGMP  321 (375)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCCCC
Confidence            999999999999997 899997654

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2.6e-29  Score=208.39  Aligned_cols=192  Identities=20%  Similarity=0.320  Sum_probs=142.5

Q ss_pred             ccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc------cccccceEEEEEccCCchhhhh-ccCCC
Q 044746            3 KPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV------GSEDTETYIKGFLAMGPFYLLC-KKNIL   75 (202)
Q Consensus         3 k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~~~~~~~l~~~~-~~~~~   75 (202)
                      .++......+.|.|-.++..........-...|..+++..+-.=++      ...+..+++|+|++||.+..++ +.+.|
T Consensus       647 Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMdYIPGGDmMSLLIrmgIF  726 (1034)
T KOG0608|consen  647 LVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMGIF  726 (1034)
T ss_pred             EEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEEeccCCccHHHHHHHhccC
Confidence            4455555555555544444333333333344444455544333222      4566778999999999886655 66779


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccc---cCc----------------
Q 044746           76 GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR---EHT----------------  136 (202)
Q Consensus        76 ~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~---~~~----------------  136 (202)
                      .+..++.++.++.+|+++.|.   +|+|||||||+|||||.+|++||.||||+.-+.-   ..+                
T Consensus       727 eE~LARFYIAEltcAiesVHk---mGFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~  803 (1034)
T KOG0608|consen  727 EEDLARFYIAELTCAIESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSP  803 (1034)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh---ccceecccCccceEEccCCceeeeeccccccceeccccccccCCCccccccCCCch
Confidence            999999999999999999999   9999999999999999999999999999975420   000                


Q ss_pred             ---------------------ccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcccccc-c
Q 044746          137 ---------------------HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEW-F  194 (202)
Q Consensus       137 ---------------------~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~~~~-~  194 (202)
                                           .......+||+.|+|||++....++..+|+||.|++|+||+.|++||..+.+.+.+. .
T Consensus       804 e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~g~~pf~~~tp~~tq~kv  883 (1034)
T KOG0608|consen  804 EWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQPPFLADTPGETQYKV  883 (1034)
T ss_pred             hhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHhhCCCCccCCCCCcceeee
Confidence                                 001123578999999999999999999999999999999999999999998876543 3


Q ss_pred             ccc
Q 044746          195 PKW  197 (202)
Q Consensus       195 ~~~  197 (202)
                      ++|
T Consensus       884 ~nw  886 (1034)
T KOG0608|consen  884 INW  886 (1034)
T ss_pred             eeh
Confidence            455

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.4e-29  Score=218.95  Aligned_cols=185  Identities=21%  Similarity=0.268  Sum_probs=150.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc-------cccccceEEEEEccCCchhhhhccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV-------GSEDTETYIKGFLAMGPFYLLCKKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~~~~~~~~~~~~l~~~~~~~   73 (202)
                      |..+|.+++++++|.|+..+-+........-|..|..++...+ ..+|       ....+.+++|+|++||.|..++.+.
T Consensus        91 V~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~n-s~Wiv~LhyAFQD~~~LYlVMdY~pGGDlltLlSk~  169 (1317)
T KOG0612|consen   91 VALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGN-SEWIVQLHYAFQDERYLYLVMDYMPGGDLLTLLSKF  169 (1317)
T ss_pred             eEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCC-cHHHHHHHHHhcCccceEEEEecccCchHHHHHhhc
Confidence            4456778888888888776655554444444555555565555 4333       4667788999999999999999776


Q ss_pred             C-CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           74 I-LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        74 ~-~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      . ++++-++.+...+..||.-+|+   .|.|||||||+|||++..|++||+|||.+-.+..+..- .+...+|||-|++|
T Consensus       170 ~~~pE~~ArFY~aEiVlAldslH~---mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~V-~s~~aVGTPDYISP  245 (1317)
T KOG0612|consen  170 DRLPEDWARFYTAEIVLALDSLHS---MGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGTV-RSSVAVGTPDYISP  245 (1317)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHh---ccceeccCCcceeEecccCcEeeccchhHHhcCCCCcE-EeccccCCCCccCH
Confidence            5 9999999999999999999999   99999999999999999999999999999877654433 33556899999999


Q ss_pred             cccC----C-CCCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          153 ELWM----P-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       153 e~~~----~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      |++.    + +.|+..+|+||+||++|||+.|.-||..++-.+
T Consensus       246 EvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslve  288 (1317)
T KOG0612|consen  246 EVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSLVE  288 (1317)
T ss_pred             HHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHHHHH
Confidence            9985    2 568999999999999999999999998776543

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.96  E-value=3.2e-29  Score=203.88  Aligned_cols=178  Identities=17%  Similarity=0.174  Sum_probs=135.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc------------ccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE------------DTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------~~~~~~~~~~~~~~l~~   68 (202)
                      ||++.+...++.+|.|..+.... ......++..|.......+|++++...            ....++++++.+ ++..
T Consensus        33 V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~  110 (355)
T cd07874          33 VCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDA-NLCQ  110 (355)
T ss_pred             EEEEEecCCCceEEEEEeCCccc-ChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccccceeEEEhhhhcc-cHHH
Confidence            67888877777777765432211 112223455566677777888876322            123567777765 4544


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      ... ..+++..+..++.|++.||.|||+   ++++||||||+||+++.++.+||+|||+++.......   .....||+.
T Consensus       111 ~~~-~~l~~~~~~~~~~qi~~aL~~LH~---~givHrDikp~Nill~~~~~~kl~Dfg~~~~~~~~~~---~~~~~~t~~  183 (355)
T cd07874         111 VIQ-MELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM---MTPYVVTRY  183 (355)
T ss_pred             HHh-hcCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHHEEECCCCCEEEeeCcccccCCCccc---cCCccccCC
Confidence            443 358899999999999999999999   9999999999999999999999999999986433221   233467999


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |+|||++.+..++.++|+||+||++++|++|+.||.+..
T Consensus       184 y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  222 (355)
T cd07874         184 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRD  222 (355)
T ss_pred             ccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999998889999999999999999999999997644

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.96  E-value=6.2e-29  Score=202.13  Aligned_cols=175  Identities=21%  Similarity=0.240  Sum_probs=134.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++++..+++.|+.|+......  ......+..|..+....+|++++.      ..+...++++++++++|...   ..
T Consensus        90 V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~---~~  164 (353)
T PLN00034         90 VYKVIHRPTGRLYALKVIYGNHE--DTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGSLEGT---HI  164 (353)
T ss_pred             EEEEEECCCCCEEEEEEEecCCc--HHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecCCCCccccc---cc
Confidence            68888888888888776533211  112234667777778888888763      34455688999999887542   34


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      .+...+..++.|++.||.|||+   ++++||||||+||+++.++.+||+|||+++.......  ......||..|+|||+
T Consensus       165 ~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~  239 (353)
T PLN00034        165 ADEQFLADVARQILSGIAYLHR---RHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMD--PCNSSVGTIAYMSPER  239 (353)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCEEEcccccceecccccc--cccccccCccccCccc
Confidence            5677888999999999999999   9999999999999999999999999999986543221  1123467999999998


Q ss_pred             cCC-----CCCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          155 WMP-----YSVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       155 ~~~-----~~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      +..     ...+.++|||||||++|||++|+.||..
T Consensus       240 ~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~  275 (353)
T PLN00034        240 INTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGV  275 (353)
T ss_pred             cccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCC
Confidence            743     2344689999999999999999999973

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.9e-29  Score=194.42  Aligned_cols=183  Identities=20%  Similarity=0.262  Sum_probs=149.3

Q ss_pred             CccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccc------ccccccceEEEEEccCCchhhhhccC-C
Q 044746            2 EKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNL------VGSEDTETYIKGFLAMGPFYLLCKKN-I   74 (202)
Q Consensus         2 ~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------i~~~~~~~~~~~~~~~~~l~~~~~~~-~   74 (202)
                      -.+|.+.++++.|.|+.++.--...+...--.-|...+...+||-+      ....+..+++++|..+|.|+-.+.+. .
T Consensus       185 IL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFVMeyanGGeLf~HLsrer~  264 (516)
T KOG0690|consen  185 ILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFVMEYANGGELFFHLSRERV  264 (516)
T ss_pred             EEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEEEEEccCceEeeehhhhhc
Confidence            4567888999999999876544433322223345566667777732      24556678999999999998777654 5


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++...+.+...|.+||.|||+   ++|+.||||.+|.+++.+|++|+.|||+++.--  .........+|||.|+|||+
T Consensus       265 FsE~RtRFYGaEIvsAL~YLHs---~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I--~~g~t~kTFCGTPEYLAPEV  339 (516)
T KOG0690|consen  265 FSEDRTRFYGAEIVSALGYLHS---RNIVYRDLKLENLLLDKDGHIKITDFGLCKEEI--KYGDTTKTFCGTPEYLAPEV  339 (516)
T ss_pred             ccchhhhhhhHHHHHHhhhhhh---CCeeeeechhhhheeccCCceEeeecccchhcc--cccceeccccCChhhcCchh
Confidence            9999999999999999999999   999999999999999999999999999998421  22334566889999999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      +....|+..+|+|.+|+++|||+-|+.||...+.+
T Consensus       340 leDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~  374 (516)
T KOG0690|consen  340 LEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHE  374 (516)
T ss_pred             hccccccceeehhhhhHHHHHHHhccCcccccchh
Confidence            99999999999999999999999999999876554

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.96  E-value=6.5e-29  Score=200.62  Aligned_cols=179  Identities=20%  Similarity=0.238  Sum_probs=142.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..++..+++|+.....  .......+..|.......+|++++.      ..+..+++++++.+++|..++.. .
T Consensus        21 V~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   98 (333)
T cd06650          21 VFKVSHKPSGLIMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAG   98 (333)
T ss_pred             EEEEEECCCCcEEEEEEeeccc--CHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEecCCCCcHHHHHHHcC
Confidence            6788888888888877643321  1111234666777777788888763      44556789999999999988754 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+.  .+++||||||+||+++.++.++|+|||++......    ......|+..|+|||
T Consensus        99 ~~~~~~~~~~~~~l~~~l~~lH~~--~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~----~~~~~~~~~~y~aPE  172 (333)
T cd06650          99 RIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MANSFVGTRSYMSPE  172 (333)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhc--CCEEecCCChhhEEEcCCCCEEEeeCCcchhhhhh----ccccCCCCccccCHH
Confidence            589999999999999999999971  47999999999999999999999999998754321    122345789999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ++.+..++.++|+||+||++||+++|+.||....
T Consensus       173 ~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~  206 (333)
T cd06650         173 RLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPD  206 (333)
T ss_pred             HhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcc
Confidence            9998889999999999999999999999997543

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.96  E-value=2.3e-29  Score=214.77  Aligned_cols=182  Identities=18%  Similarity=0.207  Sum_probs=138.2

Q ss_pred             CCccccCCC-cceeehhhhchhhhhccCCcccCCcHHH-HHHhccccccccccc-------------cceEEEEEccCCc
Q 044746            1 MEKPRNRGS-TRFITRTIDKSLDAMEMDKPIRFTSPQR-MIAADNFSNLVGSED-------------TETYIKGFLAMGP   65 (202)
Q Consensus         1 v~k~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~-------------~~~~~~~~~~~~~   65 (202)
                      ||.|++... .+++.+++-...+.    .......|.. +....+|+|||+.-+             ...+.|+|+.+|.
T Consensus        53 VYla~~~~~~~~~AlKrm~~~de~----~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~EvllLmEyC~gg~  128 (738)
T KOG1989|consen   53 VYLAQDVKGGKKYALKRMYVNDEE----ALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEVLLLMEYCKGGS  128 (738)
T ss_pred             EEEEEecCCCceeeeeeeecCCHH----HHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEEEeehhhccCCc
Confidence            788999888 66666666544221    2333444433 444556888874222             2237788999999


Q ss_pred             hhhhhcc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccC-ccc---
Q 044746           66 FYLLCKK---NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH-THI---  138 (202)
Q Consensus        66 l~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~-~~~---  138 (202)
                      |.++++.   ..|++.++++|+.++++|+.+||. +..+|||||||.+|+|+..++..||||||.+....... ...   
T Consensus       129 Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~-~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~  207 (738)
T KOG1989|consen  129 LVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHY-LKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVN  207 (738)
T ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc-CCCccchhhhhhhheEEcCCCCEEeCcccccccccCCCccHHHHH
Confidence            9998863   359999999999999999999997 45779999999999999999999999999987432221 100   


Q ss_pred             ---ccCCCCCCCcccCCcccC---CCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          139 ---TSTGRRRTPGCEAPELWM---PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       139 ---~~~~~~gt~~y~aPe~~~---~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                         .....+.|+.|+|||++.   +.+++.|+|||++||+||-|+....||+...
T Consensus       208 ~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg  262 (738)
T KOG1989|consen  208 YVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESG  262 (738)
T ss_pred             HHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCc
Confidence               011245699999999974   6789999999999999999999999998763

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.96  E-value=1.1e-28  Score=195.35  Aligned_cols=179  Identities=21%  Similarity=0.318  Sum_probs=144.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++...++.++.|+..............+..|.......+|++++.      .+....++++++++++|..++.. .
T Consensus        17 vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~   96 (290)
T cd05580          17 VMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVMEYVPGGELFSHLRKSG   96 (290)
T ss_pred             EEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEecCCCCCHHHHHHHcC
Confidence            5778887778888887765443333333445666666677777887652      44556688999999999888754 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .++...+..++.|++.||.|||+   .+++|+||+|.||+++.++.++|+|||++......     .....+++.|+|||
T Consensus        97 ~l~~~~~~~~~~qil~~l~~lH~---~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~-----~~~~~~~~~y~aPE  168 (290)
T cd05580          97 RFPEPVARFYAAQVVLALEYLHS---LDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR-----TYTLCGTPEYLAPE  168 (290)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEECCCCCEEEeeCCCccccCCC-----CCCCCCCccccChh
Confidence            68999999999999999999999   99999999999999999999999999998865433     12345688999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      .+.+...+.++|+||+|+++++|++|+.||....
T Consensus       169 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  202 (290)
T cd05580         169 IILSKGYGKAVDWWALGILIYEMLAGYPPFFDDN  202 (290)
T ss_pred             hhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCC
Confidence            9988888899999999999999999999997654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.3e-29  Score=222.21  Aligned_cols=164  Identities=22%  Similarity=0.298  Sum_probs=137.9

Q ss_pred             hccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC--------CCCHHHHHHHHHHHHH
Q 044746           24 MEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN--------ILGFGQLREIEVSTSK   89 (202)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~i~~   89 (202)
                      .+.....+|..|.+++...+|+||+.      ..+...++.++|++|.|..+++..        .++..+.+.++.++|+
T Consensus       734 ~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~  813 (1025)
T KOG1095|consen  734 SSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAK  813 (1025)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhh
Confidence            34445667999999999999999873      355567999999999999999544        4899999999999999


Q ss_pred             HHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHH
Q 044746           90 GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSF  169 (202)
Q Consensus        90 ~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~  169 (202)
                      |+.||++   ++.|||||..+|+|++....+|++|||+|+-+-....+.......-...|||||.+..+.|+.|+|||||
T Consensus       814 G~~YLe~---~~fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsF  890 (1025)
T KOG1095|consen  814 GMNYLES---KHFVHRDLAARNCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSF  890 (1025)
T ss_pred             hhHHHHh---CCCcCcchhhhheeecccCcEEEcccchhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhh
Confidence            9999999   9999999999999999999999999999994333322222222233679999999999999999999999


Q ss_pred             HHHHHHHHc-CCCCCcchhccc
Q 044746          170 GMLLFEVVG-RRRNLEKEISEG  190 (202)
Q Consensus       170 G~~l~el~~-g~~p~~~~~~~~  190 (202)
                      ||++||++| |..||....+.+
T Consensus       891 GVllWEifslG~~PY~~~~n~~  912 (1025)
T KOG1095|consen  891 GVLLWEIFSLGATPYPSRSNFE  912 (1025)
T ss_pred             HHHHHHHHhCCCCCCCCcchHH
Confidence            999999998 999998776654

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.96  E-value=1.2e-28  Score=191.00  Aligned_cols=183  Identities=19%  Similarity=0.244  Sum_probs=139.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..+++.++.|......  ..+....+..|.......+|++++.      ......++++++.+++|..++..  
T Consensus        11 vy~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~   88 (252)
T cd05084          11 VFSGRLRADNTPVAVKSCRETL--PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEG   88 (252)
T ss_pred             EEEEEEecCCceEEEEecCccC--CHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcHHHHHHhCC
Confidence            6888888777878777533211  1112234666766777788888763      33445688899999999988754  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   ++++|+||||+||+++.++.++|+|||++................++..|+||
T Consensus        89 ~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  165 (252)
T cd05084          89 PRLKVKELIQMVENAAAGMEYLES---KHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAP  165 (252)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCccccccchheEEEcCCCcEEECccccCcccccccccccCCCCCCceeecCc
Confidence            358999999999999999999999   99999999999999999999999999998754322111111111224569999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |.+.+..++.++|+||+|++++|+++ |..||....+
T Consensus       166 E~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~  202 (252)
T cd05084         166 EALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSN  202 (252)
T ss_pred             hhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCH
Confidence            99988889999999999999999997 9999975543

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.5e-29  Score=214.05  Aligned_cols=177  Identities=19%  Similarity=0.289  Sum_probs=146.4

Q ss_pred             CCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc----------
Q 044746            8 GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK----------   71 (202)
Q Consensus         8 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~----------   71 (202)
                      .....||+|..+...+.  ....+|..|..+.+..+|+||+.      .+.-...+.||+..|+|.+++.          
T Consensus       514 ~~~~lVAVK~LKd~a~~--~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~  591 (774)
T KOG1026|consen  514 QDEQLVAVKALKDKAEN--QARQDFRREAELLAELQHPNIVRLLGVCREGDPLCMVFEYMDHGDLHEFLRARSPKADKLA  591 (774)
T ss_pred             ccceehhHhhhcccccH--HHHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeEEEEEecccccHHHHHHhhCCcccccc
Confidence            45577888876554333  24567999999999999999873      5666678999999999999882          


Q ss_pred             -----cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceec-cccCcccccCCCCC
Q 044746           72 -----KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY-NREHTHITSTGRRR  145 (202)
Q Consensus        72 -----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~-~~~~~~~~~~~~~g  145 (202)
                           ...++..+.+.++.|||.|++||-+   +.++||||..+|+|+..+..+||+|||+++.. +.+.+... ..-.-
T Consensus       592 ~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~---~~FVHRDLATRNCLVge~l~VKIsDfGLsRdiYssDYYk~~-~~t~l  667 (774)
T KOG1026|consen  592 SGQDTPPPLSTSQFLHIATQIAAGMEYLSS---HHFVHRDLATRNCLVGENLVVKISDFGLSRDIYSSDYYKVR-GNTLL  667 (774)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CcccccchhhhhceeccceEEEecccccchhhhhhhhhccc-CCcee
Confidence                 2238899999999999999999999   99999999999999999999999999999843 33322222 11122


Q ss_pred             CCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhccc
Q 044746          146 TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEISEG  190 (202)
Q Consensus       146 t~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~~~  190 (202)
                      +.+|||||.+..+.|++++|||||||+|||+++ |+.|+.+..+++
T Consensus       668 PIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~E  713 (774)
T KOG1026|consen  668 PIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQE  713 (774)
T ss_pred             eeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchHH
Confidence            678999999999999999999999999999998 999999988776

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.96  E-value=1.5e-28  Score=198.92  Aligned_cols=111  Identities=27%  Similarity=0.402  Sum_probs=95.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   ++|+||||||+||+++.++.++|+|||++..+.............++..|+|||
T Consensus       169 ~l~~~~~~~~~~qi~~aL~~lH~---~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE  245 (337)
T cd05054         169 PLTLEDLISYSFQVARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPE  245 (337)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcH
Confidence            57899999999999999999999   999999999999999999999999999998654332222223344567899999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      ++.+..++.++||||+||+++|+++ |+.||....
T Consensus       246 ~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~  280 (337)
T cd05054         246 SIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQ  280 (337)
T ss_pred             HhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999999997 999997643

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.96  E-value=7.2e-29  Score=197.13  Aligned_cols=180  Identities=18%  Similarity=0.247  Sum_probs=142.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++++..+++.++.|......   ......+..|.......+|++++.      .+...+++++++++++|..+.....
T Consensus        36 v~~~~~~~~~~~v~ik~~~~~~---~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~  112 (296)
T cd06654          36 VYTAMDVATGQEVAIRQMNLQQ---QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETC  112 (296)
T ss_pred             EEEEEECCCCcEEEEEEEecCC---cchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecccCCCCHHHHHHhcC
Confidence            5777777777777766543221   112234556666677778887663      2345678899999999999998888


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++.++..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++.........  .....+++.|+|||.
T Consensus       113 ~~~~~~~~i~~ql~~aL~~LH~---~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~  187 (296)
T cd06654         113 MDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK--RSTMVGTPYWMAPEV  187 (296)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCEEECccccchhccccccc--cCcccCCccccCHHH
Confidence            9999999999999999999999   99999999999999999999999999988754322211  123456889999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +.+..++.++|+|||||++++|++|++||....+
T Consensus       188 ~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~  221 (296)
T cd06654         188 VTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP  221 (296)
T ss_pred             HcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCH
Confidence            9888889999999999999999999999976654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.96  E-value=7.3e-29  Score=197.58  Aligned_cols=173  Identities=18%  Similarity=0.262  Sum_probs=131.0

Q ss_pred             cceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC----------
Q 044746           10 TRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN----------   73 (202)
Q Consensus        10 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~----------   73 (202)
                      ...||.|+.+....  ......|..|.......+|++++.      ..+...++++++.+++|..++...          
T Consensus        46 ~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~  123 (304)
T cd05096          46 PLLVAVKILRPDAN--KNARNDFLKEVKILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGN  123 (304)
T ss_pred             ceEEEEEEecCCCC--HHHHHHHHHHHHHHhhcCCCCeeEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccc
Confidence            33566665433211  112234666777777788888763      234467889999999998877432          


Q ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCC
Q 044746           74 ----------ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGR  143 (202)
Q Consensus        74 ----------~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~  143 (202)
                                .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++..............
T Consensus       124 ~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~  200 (304)
T cd05096         124 DAVPPAHCLPAISYSSLLHVALQIASGMKYLSS---LNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRA  200 (304)
T ss_pred             cccccccccccccHHHHHHHHHHHHHHHHHHHH---CCccccCcchhheEEcCCccEEECCCccceecccCceeEecCcC
Confidence                      36788899999999999999999   99999999999999999999999999999865433222222233


Q ss_pred             CCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc--CCCCCcchh
Q 044746          144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG--RRRNLEKEI  187 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~--g~~p~~~~~  187 (202)
                      .++..|+|||++....++.++|+||||++++||++  +..||....
T Consensus       201 ~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~  246 (304)
T cd05096         201 VLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGELT  246 (304)
T ss_pred             CCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcCC
Confidence            45788999999988889999999999999999986  567776543

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.96  E-value=1.7e-28  Score=196.04  Aligned_cols=180  Identities=19%  Similarity=0.298  Sum_probs=136.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++...+..++.|..+....  ......+..|.......+|++++.      ..+...++++++.+ ++...+..  
T Consensus        22 Vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~   98 (309)
T cd07872          22 VFKGRSKLTENLVALKEIRLEHE--EGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYLDK-DLKQYMDDCG   98 (309)
T ss_pred             EEEEEecCCCCeEEEEEeecccc--CCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeCCCC-CHHHHHHhcC
Confidence            68888888888888776443221  112223445666777778887763      33445678888875 56555532  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   ++|+||||||+||+++.++.++|+|||++........  ......+++.|+||
T Consensus        99 ~~~~~~~~~~~~~qi~~aL~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aP  173 (309)
T cd07872          99 NIMSMHNVKIFLYQILRGLAYCHR---RKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTK--TYSNEVVTLWYRPP  173 (309)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECccccceecCCCcc--ccccccccccccCC
Confidence            348999999999999999999999   9999999999999999999999999999975433221  11234568899999


Q ss_pred             cccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |.+.+ ..++.++|+||+|+++++|++|++||.....
T Consensus       174 E~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~  210 (309)
T cd07872         174 DVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTV  210 (309)
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh
Confidence            98865 4688999999999999999999999976543

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.96  E-value=1.1e-28  Score=193.10  Aligned_cols=183  Identities=18%  Similarity=0.167  Sum_probs=135.8

Q ss_pred             CCccccCCCcc--eeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc------------ccceEEEEEccCCch
Q 044746            1 MEKPRNRGSTR--FITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE------------DTETYIKGFLAMGPF   66 (202)
Q Consensus         1 v~k~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------~~~~~~~~~~~~~~l   66 (202)
                      ||++.....+.  .++.|..+... ........+..|.......+|++++...            ....++++++.+++|
T Consensus        15 V~~~~~~~~~~~~~~a~k~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l   93 (272)
T cd05075          15 VMEGQLNQDDSILKVAVKTMKIAI-CTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDL   93 (272)
T ss_pred             EEEeEEccCCCeeeEEEEecccCc-CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCcEEEEEeCCCCcH
Confidence            56776655554  34544332211 1112234456666667777888876421            134688899999998


Q ss_pred             hhhhc-------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccc
Q 044746           67 YLLCK-------KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT  139 (202)
Q Consensus        67 ~~~~~-------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~  139 (202)
                      ..++.       ...+++.....++.|++.||.|||+   ++++||||||+||+++.++.++++|||+++..........
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  170 (272)
T cd05075          94 HSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSS---KSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQ  170 (272)
T ss_pred             HHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhheEEcCCCCEEECCCCcccccCcccceec
Confidence            77652       2348899999999999999999999   9999999999999999999999999999986543322222


Q ss_pred             cCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          140 STGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       140 ~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      .....+++.|++||......++.++|+||||+++||+++ |+.||....
T Consensus       171 ~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~  219 (272)
T cd05075         171 GRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVE  219 (272)
T ss_pred             CCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence            222345778999999998889999999999999999999 899997643

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.96  E-value=1e-28  Score=192.90  Aligned_cols=182  Identities=16%  Similarity=0.258  Sum_probs=142.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc---
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK---   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~---   71 (202)
                      ||++++...++.++.|..+.......+....+..|.......+|++++.      ..+...+++++.++++|..+..   
T Consensus        18 v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~   97 (267)
T cd08228          18 VYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVLELADAGDLSQMIKYFK   97 (267)
T ss_pred             EEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEEEecCCCcHHHHHHHhh
Confidence            6788887777777777543322222233344666777777888887653      2344568899999999887663   


Q ss_pred             --cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           72 --KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        72 --~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                        ...++...+..++.|++.||.|||+   ++++|+||||+||+++.++.++++|||++.........  .....|++.|
T Consensus        98 ~~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~~--~~~~~~~~~~  172 (267)
T cd08228          98 KQKRLIPERTVWKYFVQLCSAVEHMHS---RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTA--AHSLVGTPYY  172 (267)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCCHHHEEEcCCCCEEECccccceeccchhHH--HhcCCCCccc
Confidence              3458999999999999999999999   99999999999999999999999999998865432211  1234568899


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +|||.+.+..++.++|+||+|++++|+++|+.||....
T Consensus       173 ~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~  210 (267)
T cd08228         173 MSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK  210 (267)
T ss_pred             cChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCcccc
Confidence            99999988888999999999999999999999996543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.96  E-value=1.7e-28  Score=191.20  Aligned_cols=183  Identities=18%  Similarity=0.275  Sum_probs=137.9

Q ss_pred             CCccccC--CCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhc--
Q 044746            1 MEKPRNR--GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCK--   71 (202)
Q Consensus         1 v~k~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~--   71 (202)
                      ||++..+  ..+..|+.|+.+...  .......+..|.......+|++++.     ......++++++++++|..++.  
T Consensus        11 v~~~~~~~~~~~~~vavk~~~~~~--~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~   88 (257)
T cd05115          11 VKKGVYKMRKKQIDVAIKVLKNEN--EKSVRDEMMREAEIMHQLDNPYIVRMIGVCEAEALMLVMEMASGGPLNKFLSGK   88 (257)
T ss_pred             EEEEEEecCCCceeEEEEEccccc--ChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCeEEEEEeCCCCCHHHHHHhC
Confidence            4555443  334456666543321  1122345667777778888888763     2344568899999999998884  


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc-ccCCCCCCCccc
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-TSTGRRRTPGCE  150 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~gt~~y~  150 (202)
                      ...+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||++.......... ......+++.|+
T Consensus        89 ~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~  165 (257)
T cd05115          89 KDEITVSNVVELMHQVSMGMKYLEG---KNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWY  165 (257)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHh---cCeeecccchheEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcccC
Confidence            4568999999999999999999999   999999999999999999999999999997554332211 112223357899


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |||.+....++.++|+||||+++||+++ |..||.....
T Consensus       166 aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~  204 (257)
T cd05115         166 APECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKG  204 (257)
T ss_pred             CHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCH
Confidence            9999988888999999999999999996 9999976543

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.96  E-value=5.1e-30  Score=211.05  Aligned_cols=172  Identities=21%  Similarity=0.244  Sum_probs=142.9

Q ss_pred             eehhhhchhhhhccCCcccCCcHHHHHHhccccccccccccc------eEEEEEccCCchhhhhccCC--CCHHHHHHHH
Q 044746           13 ITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTE------TYIKGFLAMGPFYLLCKKNI--LGFGQLREIE   84 (202)
Q Consensus        13 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~   84 (202)
                      ||+|..+.......+...+|-.|..+....+|+|++...|..      .+++|++.+|+|..++++..  ++..+...++
T Consensus       189 VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~  268 (474)
T KOG0194|consen  189 VAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFC  268 (474)
T ss_pred             eEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHH
Confidence            777776654455566777899999999999999998644433      48999999999999998765  9999999999


Q ss_pred             HHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchh
Q 044746           85 VSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKC  164 (202)
Q Consensus        85 ~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~  164 (202)
                      .+++.||+|||+   +++|||||-.+|+|++.++.+|++|||+++....  .........-+..|+|||.+....|+.++
T Consensus       269 ~~AA~Gl~YLh~---k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~--~~~~~~~~klPirWLAPEtl~~~~~s~kT  343 (474)
T KOG0194|consen  269 YDAARGLEYLHS---KNCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQ--YVMKKFLKKLPIRWLAPETLNTGIFSFKT  343 (474)
T ss_pred             HHHHhHHHHHHH---CCCcchhHhHHHheecCCCeEEeCccccccCCcc--eeeccccccCcceecChhhhccCcccccc
Confidence            999999999999   9999999999999999999999999999875431  11111011236789999999999999999


Q ss_pred             hHHHHHHHHHHHHc-CCCCCcchhcc
Q 044746          165 DVFSFGMLLFEVVG-RRRNLEKEISE  189 (202)
Q Consensus       165 Diws~G~~l~el~~-g~~p~~~~~~~  189 (202)
                      |||||||++||+++ |..||.+....
T Consensus       344 DV~sfGV~~~Eif~~g~~Py~g~~~~  369 (474)
T KOG0194|consen  344 DVWSFGVLLWEIFENGAEPYPGMKNY  369 (474)
T ss_pred             chhheeeeEEeeeccCCCCCCCCCHH
Confidence            99999999999998 88899876643

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.96  E-value=1.6e-28  Score=195.09  Aligned_cols=111  Identities=23%  Similarity=0.240  Sum_probs=95.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc-----cccCCCCCCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-----ITSTGRRRTPG  148 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~-----~~~~~~~gt~~  148 (202)
                      ..++..+..++.|++.||.|||+   .+++||||||+|||++.++.++|+|||+++........     .......||+.
T Consensus       122 ~~~~~~~~~i~~qi~~~l~~lH~---~~iiHrDiKp~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~  198 (294)
T PHA02882        122 CKNKKLIKNIMKDMLTTLEYIHE---HGISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLY  198 (294)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCcc
Confidence            46788899999999999999999   99999999999999999999999999999865322111     11123458999


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |+|||++.+..++.++||||+||+++||++|++||....
T Consensus       199 y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~  237 (294)
T PHA02882        199 YAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFG  237 (294)
T ss_pred             ccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccc
Confidence            999999999899999999999999999999999998763

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.96  E-value=1.4e-28  Score=194.02  Aligned_cols=180  Identities=17%  Similarity=0.253  Sum_probs=134.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHH---HHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQR---MIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++++...+..++.|...............+..+..   .....+|++++.      ..+...++++++++++|..++.
T Consensus        10 Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~   89 (279)
T cd05633          10 VYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMNGGDLHYHLS   89 (279)
T ss_pred             EEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCCCCCHHHHHH
Confidence            6888888888888877643322111111111222222   222235666542      3456678999999999987764


Q ss_pred             -cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           72 -KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        72 -~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                       ...+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++++|||++.......    .....|++.|+
T Consensus        90 ~~~~l~~~~~~~i~~qi~~al~~lH~---~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~y~  162 (279)
T cd05633          90 QHGVFSEKEMRFYATEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASVGTHGYM  162 (279)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHH---CCcCCCCCCHHHEEECCCCCEEEccCCcceeccccC----ccCcCCCcCcc
Confidence             3569999999999999999999999   999999999999999999999999999987543221    12235789999


Q ss_pred             CCcccC-CCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          151 APELWM-PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       151 aPe~~~-~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |||.+. +..++.++|+||+||+++++++|+.||....
T Consensus       163 aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~  200 (279)
T cd05633         163 APEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHK  200 (279)
T ss_pred             CHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCC
Confidence            999986 4568899999999999999999999997543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=6e-30  Score=210.81  Aligned_cols=180  Identities=22%  Similarity=0.235  Sum_probs=152.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc------cceEEEEEccCCc--hhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED------TETYIKGFLAMGP--FYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~~~~~~~--l~~~~~~   72 (202)
                      ||-|++..+.+.||.|-....-..+.++...+..|..-+...+|||.|...+      ..+++++|+-|.-  +..+ .+
T Consensus        42 VYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEYClGSAsDlleV-hk  120 (948)
T KOG0577|consen   42 VYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEYCLGSASDLLEV-HK  120 (948)
T ss_pred             eEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHHHhccHHHHHHH-Hh
Confidence            7889999999999987777777777888888889999999999999997543      3457788876542  2222 45


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      .++.+-++..|+.+.+.||.|||+   .+.||||||..|||++.+|.+||+|||.+.....      ....+|||.||||
T Consensus       121 KplqEvEIAAi~~gaL~gLaYLHS---~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~P------AnsFvGTPywMAP  191 (948)
T KOG0577|consen  121 KPLQEVEIAAITHGALQGLAYLHS---HNRIHRDIKAGNILLSEPGLVKLADFGSASIMAP------ANSFVGTPYWMAP  191 (948)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHH---hhHHhhhccccceEecCCCeeeeccccchhhcCc------hhcccCCccccch
Confidence            678888999999999999999999   9999999999999999999999999999876543      3457889999999


Q ss_pred             cccC---CCCCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          153 ELWM---PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       153 e~~~---~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      |++.   .+.|+.++||||+|+++.||..++||+...+-+.
T Consensus       192 EVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAMS  232 (948)
T KOG0577|consen  192 EVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS  232 (948)
T ss_pred             hHheeccccccCCccceeeccchhhhhhhcCCCccCchHHH
Confidence            9986   4689999999999999999999999998776553

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.95  E-value=1.3e-28  Score=195.35  Aligned_cols=179  Identities=19%  Similarity=0.261  Sum_probs=141.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++++...+..++.|.......   .....+..|.......+|++++.      .++...++++++++++|..++....
T Consensus        38 v~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~  114 (292)
T cd06658          38 VCIATEKHTGKQVAVKKMDLRKQ---QRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGALTDIVTHTR  114 (292)
T ss_pred             EEEEEECCCCCEEEEEEEecchH---HHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCCcHHHHHhcCC
Confidence            56777766666777665322211   12233556666667778887652      4556678999999999999888788


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++.++..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++........  ......|+..|+|||.
T Consensus       115 l~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~  189 (292)
T cd06658         115 MNEEQIATVCLSVLRALSYLHN---QGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVP--KRKSLVGTPYWMAPEV  189 (292)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCEEEccCcchhhcccccc--cCceeecCccccCHHH
Confidence            9999999999999999999999   9999999999999999999999999999875433221  1123456889999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +.+..++.++|+||+|++++|+++|+.||....
T Consensus       190 ~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~  222 (292)
T cd06658         190 ISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEP  222 (292)
T ss_pred             HccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            988889999999999999999999999997644

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=3.5e-28  Score=189.34  Aligned_cols=184  Identities=19%  Similarity=0.161  Sum_probs=140.4

Q ss_pred             CCccccCCCcceeehhhhchhhhh--ccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAM--EMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++.+...++.++.|........  .......+..|.......+|++++.      ......++++++++++|......
T Consensus        18 vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~   97 (263)
T cd06625          18 VYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLKA   97 (263)
T ss_pred             EEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEEEEEECCCCcHHHHHHH
Confidence            567777666677776654322111  1112234566666777788887753      33456688899999999887754


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccc-cCCCCCCCccc
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCE  150 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~-~~~~~gt~~y~  150 (202)
                       ..++......++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||+++.......... .....++..|+
T Consensus        98 ~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~  174 (263)
T cd06625          98 YGALTETVTRKYTRQILEGVEYLHS---NMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWM  174 (263)
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeecccceeccccccccccccCCCcCcccc
Confidence             458999999999999999999999   9999999999999999999999999999876533211111 12244678999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |||++.+..++.++|+||+|+++||+++|+.||....
T Consensus       175 aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~  211 (263)
T cd06625         175 SPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFE  211 (263)
T ss_pred             CcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccc
Confidence            9999998889999999999999999999999997643

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.95  E-value=3.7e-28  Score=194.34  Aligned_cols=178  Identities=17%  Similarity=0.226  Sum_probs=128.6

Q ss_pred             CCccccCC--CcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRG--STRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||+++...  ....++.|.....     .....+..|.......+|+|++..        .....++++++.+ ++..++
T Consensus        17 Vy~~~~~~~~~~~~~a~k~~~~~-----~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~   90 (317)
T cd07867          17 VYKAKRKDGKDEKEYALKQIEGT-----GISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH-DLWHII   90 (317)
T ss_pred             EEEEEecCCCccceEEEEEecCC-----CCcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC-cHHHHH
Confidence            67777543  3345555433221     112235566777777889987632        2334566777664 454443


Q ss_pred             c----------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEE----cCCCceEEeeeecceeccccCc
Q 044746           71 K----------KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL----DENFFPKAADFGLAKLYNREHT  136 (202)
Q Consensus        71 ~----------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~----~~~~~~kl~dfgl~~~~~~~~~  136 (202)
                      .          ...+++..+..++.|++.||.|||+   .+++||||||+||++    +.++.++|+|||+++.......
T Consensus        91 ~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~  167 (317)
T cd07867          91 KFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLK  167 (317)
T ss_pred             HhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHh---CCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcc
Confidence            2          1248889999999999999999999   999999999999999    4567899999999986543322


Q ss_pred             c-cccCCCCCCCcccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          137 H-ITSTGRRRTPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       137 ~-~~~~~~~gt~~y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      . .......||+.|+|||++.+ ..++.++||||+||+++||+||++||....
T Consensus       168 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~~  220 (317)
T cd07867         168 PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQ  220 (317)
T ss_pred             cccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCccccc
Confidence            1 12234567899999999876 457899999999999999999999997544

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.95  E-value=1.5e-28  Score=195.37  Aligned_cols=179  Identities=20%  Similarity=0.259  Sum_probs=142.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++++..++..++.|+......   .....+..|.......+|++++.      .+....++++++++++|..+.....
T Consensus        37 v~~~~~~~~~~~v~iK~~~~~~~---~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~  113 (297)
T cd06659          37 VCIAREKHSGRQVAVKMMDLRKQ---QRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQTR  113 (297)
T ss_pred             EEEEEEcCCCCEEEEEEEEeccc---chHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCCCCHHHHHhhcC
Confidence            57777776677777766432211   12233555666667778887652      3455678899999999999888888


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++........  ......|+..|+|||+
T Consensus       114 ~~~~~~~~~~~qi~~~L~~LH~---~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~  188 (297)
T cd06659         114 LNEEQIATVCESVLQALCYLHS---QGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVP--KRKSLVGTPYWMAPEV  188 (297)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHeEEccCCcEEEeechhHhhcccccc--cccceecCccccCHHH
Confidence            9999999999999999999999   9999999999999999999999999999875433221  1223457899999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +.+..++.++|+||+|++++||++|+.||....
T Consensus       189 ~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~  221 (297)
T cd06659         189 ISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDS  221 (297)
T ss_pred             HccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            988889999999999999999999999997554

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.95  E-value=2.8e-28  Score=192.09  Aligned_cols=179  Identities=17%  Similarity=0.265  Sum_probs=134.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHH---HHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQR---MIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++++...++.+|.|+..............+..+..   .....+|++++.      ..+...++++++.+++|..+..
T Consensus        10 Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~g~~L~~~l~   89 (278)
T cd05606          10 VYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLS   89 (278)
T ss_pred             EEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCCCCcHHHHHH
Confidence            6888888888888887643322111111111222222   223346676653      3455668899999999987774


Q ss_pred             c-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           72 K-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        72 ~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      . ..+++..+..++.|++.|+.|||+   .+++|||+||+||+++.++.++|+|||++.......    .....|+..|+
T Consensus        90 ~~~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~~y~  162 (278)
T cd05606          90 QHGVFSEAEMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASVGTHGYM  162 (278)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHH---CCEEcCCCCHHHEEECCCCCEEEccCcCccccCccC----CcCcCCCcCCc
Confidence            4 468999999999999999999999   999999999999999999999999999987543221    12345789999


Q ss_pred             CCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          151 APELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       151 aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      |||.+... .++.++|+||+|++++||++|+.||...
T Consensus       163 aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~  199 (278)
T cd05606         163 APEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQH  199 (278)
T ss_pred             CcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCC
Confidence            99998754 6889999999999999999999999765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.95  E-value=9.6e-29  Score=197.02  Aligned_cols=181  Identities=21%  Similarity=0.279  Sum_probs=130.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||+++++..+..+..++..............+..|....... +|++++.      ..+..+++++++.+++|..++.. 
T Consensus        23 V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  102 (303)
T cd05088          23 VLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKS  102 (303)
T ss_pred             EEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEEEEeCCCCcHHHHHHhc
Confidence            577776554433322222111111111223344554544454 7787652      44567788999999999888743 


Q ss_pred             ----------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc
Q 044746           73 ----------------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT  136 (202)
Q Consensus        73 ----------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~  136 (202)
                                      ..+++..+..++.|++.|++|||+   ++++||||||+||+++.++.++|+|||++....... 
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~---~gi~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~-  178 (303)
T cd05088         103 RVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYV-  178 (303)
T ss_pred             ccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHh---CCccccccchheEEecCCCcEEeCccccCcccchhh-
Confidence                            247899999999999999999999   999999999999999999999999999986322111 


Q ss_pred             ccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       137 ~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                        ......++..|+|||.+.+..++.++|+||||++++|++| |..||....
T Consensus       179 --~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~  228 (303)
T cd05088         179 --KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT  228 (303)
T ss_pred             --hcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCC
Confidence              1111223567999999988888999999999999999998 999997544

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.95  E-value=2.4e-28  Score=191.48  Aligned_cols=179  Identities=21%  Similarity=0.262  Sum_probs=130.2

Q ss_pred             CCccccCCCcce--eehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRF--ITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++++..++..  ++.|..+..  ........+..|....... +|++++.      ..+..+++++++.+++|..++.
T Consensus        11 v~~~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~   88 (270)
T cd05047          11 VLKARIKKDGLRMDAAIKRMKEY--ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLR   88 (270)
T ss_pred             EEEEEEcCCCCeeEEEEEEcccc--CCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCCCcHHHHHH
Confidence            567776555442  344433221  1111122344554544444 6777653      3455678999999999988875


Q ss_pred             cC-----------------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceecccc
Q 044746           72 KN-----------------ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE  134 (202)
Q Consensus        72 ~~-----------------~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~  134 (202)
                      ..                 .+++.++..++.|++.||+|||+   .+++||||||+||+++.++.++++|||++......
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~---~~i~H~dikp~nili~~~~~~kl~dfgl~~~~~~~  165 (270)
T cd05047          89 KSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVY  165 (270)
T ss_pred             hccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccccceEEEcCCCeEEECCCCCccccchh
Confidence            32                 37899999999999999999999   99999999999999999999999999998632211


Q ss_pred             CcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       135 ~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      .   .......+..|+|||++....++.++|+||||++++||++ |..||....
T Consensus       166 ~---~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~  216 (270)
T cd05047         166 V---KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT  216 (270)
T ss_pred             h---hccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccC
Confidence            1   1111223567999999988889999999999999999997 999997543

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.95  E-value=3.3e-28  Score=191.20  Aligned_cols=183  Identities=19%  Similarity=0.257  Sum_probs=137.4

Q ss_pred             CCccccCC-----CcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhh
Q 044746            1 MEKPRNRG-----STRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++....     ....++.|..+....  .+....+..|..+....+|++++.      .+....++++++++++|..+
T Consensus        21 v~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~   98 (280)
T cd05049          21 VFLGECYHLEPENDKELVAVKTLKETAS--NDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKF   98 (280)
T ss_pred             EeeeeeccccCcCCcceEEEEeecccCC--HHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeEEEEecCCCCCHHHH
Confidence            46665533     345566655432211  112245666666677777887652      34556788899999999888


Q ss_pred             hcc---------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceecccc
Q 044746           70 CKK---------------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE  134 (202)
Q Consensus        70 ~~~---------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~  134 (202)
                      +..               ..+++..+..++.|++.|+.|||+   ++++||||||+||+++.++.++|+|||++......
T Consensus        99 i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~---~~i~h~dlkp~nili~~~~~~kl~d~g~~~~~~~~  175 (280)
T cd05049          99 LRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLAS---QHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTT  175 (280)
T ss_pred             HHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhh---CCeeccccccceEEEcCCCeEEECCcccceecccC
Confidence            743               247889999999999999999999   99999999999999999999999999999754332


Q ss_pred             CcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       135 ~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ..........+++.|+|||++.+..++.++|+||+|++++||++ |+.||.....
T Consensus       176 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~  230 (280)
T cd05049         176 DYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSN  230 (280)
T ss_pred             cceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCH
Confidence            22122223345778999999998899999999999999999998 9999976543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.95  E-value=4e-28  Score=188.79  Aligned_cols=184  Identities=21%  Similarity=0.312  Sum_probs=138.0

Q ss_pred             CCccc--cCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPR--NRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++.  ....+..++.|+.+.... .......+..|..+....+|++++.     .+....+++++..+++|..++.. 
T Consensus        11 v~~~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~   89 (257)
T cd05116          11 VKKGMYKMKKSEKTVAVKILKNDNN-DPALKDELLREANVMQQLDNPYIVRMIGICEAESWMLVMELAELGPLNKFLQKN   89 (257)
T ss_pred             eEEeEEecCCCceEEEEEEccCCCC-cHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCcEEEEecCCCCcHHHHHHhc
Confidence            46653  344556677666432211 1122334666667777788887662     23344678889999999888754 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc-ccCCCCCCCcccC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-TSTGRRRTPGCEA  151 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~gt~~y~a  151 (202)
                      ..+++..+..++.|++.||.|||+   ++++||||||.||+++.++.++|+|||+++......... ......++..|+|
T Consensus        90 ~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  166 (257)
T cd05116          90 KHVTEKNITELVHQVSMGMKYLEE---TNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYA  166 (257)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCccccC
Confidence            468999999999999999999999   999999999999999999999999999998654332211 1122233578999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ||.+....++.++|+||||+++||+++ |++||.....
T Consensus       167 PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~  204 (257)
T cd05116         167 PECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKG  204 (257)
T ss_pred             HhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            999988888999999999999999998 9999976543

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.95  E-value=3.8e-28  Score=193.03  Aligned_cols=180  Identities=19%  Similarity=0.223  Sum_probs=142.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++++..+++.++.|.....   .......+..|.......+|++++.      .+....++++++.+++|..+.....
T Consensus        35 vy~~~~~~~~~~v~iK~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~  111 (296)
T cd06655          35 VFTAIDVATGQEVAIKQINLQ---KQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYLAGGSLTDVVTETC  111 (296)
T ss_pred             EEEEEEcCCCcEEEEEEEecc---cCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEecCCCcHHHHHHhcC
Confidence            577777777777776643221   1222334555666667778887663      3445678899999999999998888


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++.++..++.|++.|+.|||+   .+++|+||||+||+++.++.++|+|||++.........  .....++..|+|||.
T Consensus       112 l~~~~~~~i~~~l~~al~~LH~---~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~  186 (296)
T cd06655         112 MDEAQIAAVCRECLQALEFLHA---NQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSK--RSTMVGTPYWMAPEV  186 (296)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEccCccchhccccccc--CCCcCCCccccCcch
Confidence            9999999999999999999999   99999999999999999999999999998754332211  123456889999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +.+..++.++|+|||||++|++++|+.||....+
T Consensus       187 ~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~  220 (296)
T cd06655         187 VTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENP  220 (296)
T ss_pred             hcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            9888899999999999999999999999987554

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.95  E-value=1.9e-28  Score=191.73  Aligned_cols=155  Identities=19%  Similarity=0.248  Sum_probs=120.0

Q ss_pred             cCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC------CCCHHHHHHHHHHHHHHHHHHHhCC
Q 044746           31 RFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN------ILGFGQLREIEVSTSKGIAYLHEEC   98 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~~   98 (202)
                      .|..|.......+|+|++.      ......++++++++|+|..++...      ..++.....++.|++.||.|||+  
T Consensus        41 ~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~--  118 (269)
T cd05042          41 LFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQ--  118 (269)
T ss_pred             HHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHh--
Confidence            3555555566678888763      344567899999999999887543      24677889999999999999999  


Q ss_pred             CCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCC-------CCCCchhhHHHHHH
Q 044746           99 RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMP-------YSVTQKCDVFSFGM  171 (202)
Q Consensus        99 ~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~-------~~~~~~~Diws~G~  171 (202)
                       .+++||||||+||+++.++.++++|||++................+++.|+|||++..       ..++.++|+||+||
T Consensus       119 -~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~  197 (269)
T cd05042         119 -ADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGV  197 (269)
T ss_pred             -cCEecccccHhheEecCCCcEEEeccccccccccchheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHH
Confidence             9999999999999999999999999999865332222112223344678999998742       35678999999999


Q ss_pred             HHHHHHc-CCCCCcchhc
Q 044746          172 LLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       172 ~l~el~~-g~~p~~~~~~  188 (202)
                      ++|||++ |..||....+
T Consensus       198 ~l~el~~~~~~p~~~~~~  215 (269)
T cd05042         198 TMWELFTAADQPYPDLSD  215 (269)
T ss_pred             HHHHHHhCCCCCCCcCCH
Confidence            9999998 8889876543

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.95  E-value=4.3e-28  Score=192.03  Aligned_cols=155  Identities=21%  Similarity=0.331  Sum_probs=126.1

Q ss_pred             cCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-----------------CCCCHHHHHHHHHHH
Q 044746           31 RFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-----------------NILGFGQLREIEVST   87 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-----------------~~~~~~~~~~~~~~i   87 (202)
                      .+..|.......+|++++.      .+....++++++++++|.+++..                 ..+++..+..++.|+
T Consensus        53 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i  132 (291)
T cd05094          53 DFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQI  132 (291)
T ss_pred             HHHHHHHHHhcCCCCCcceEEEEEccCCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHH
Confidence            4556666677778887652      34556788999999999888743                 238999999999999


Q ss_pred             HHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHH
Q 044746           88 SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVF  167 (202)
Q Consensus        88 ~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diw  167 (202)
                      +.||.|||+   ++++||||||+||+++.++.++|+|||++................++..|+|||.+.+..++.++|+|
T Consensus       133 ~~al~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~  209 (291)
T cd05094         133 ASGMVYLAS---QHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVW  209 (291)
T ss_pred             HHHHHHHHh---CCeeecccCcceEEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHH
Confidence            999999999   99999999999999999999999999999754432222222334457889999999988899999999


Q ss_pred             HHHHHHHHHHc-CCCCCcchhc
Q 044746          168 SFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       168 s~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |||++++||++ |+.||.....
T Consensus       210 slG~il~el~t~g~~p~~~~~~  231 (291)
T cd05094         210 SFGVILWEIFTYGKQPWFQLSN  231 (291)
T ss_pred             HHHHHHHHHHhCCCCCCCCCCH
Confidence            99999999999 9999866443

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.95  E-value=1.8e-28  Score=193.17  Aligned_cols=184  Identities=18%  Similarity=0.175  Sum_probs=136.3

Q ss_pred             CCccccCC-----CcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhh
Q 044746            1 MEKPRNRG-----STRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++...+     .++.|+.|..+.....  .....+..|..+....+|++++.      ......++.++..+++|..+
T Consensus        21 V~~~~~~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~e~~~~~~l~~~   98 (283)
T cd05091          21 VYKGHLFGTAPGEQTQAVAIKTLKDKAEG--PLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDLHEF   98 (283)
T ss_pred             EEEEEEecCCCCCceeEEEEEEccCCCCH--HHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEEEEcCCCCcHHHH
Confidence            45555433     2455666664432111  11234666777777788888763      23345677888888888777


Q ss_pred             hc-----------------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceecc
Q 044746           70 CK-----------------KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN  132 (202)
Q Consensus        70 ~~-----------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~  132 (202)
                      +.                 ...+++..+..++.|++.||.|+|+   ++++||||||+||+++.++.+||+|||+++...
T Consensus        99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~---~gi~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  175 (283)
T cd05091          99 LVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSS---HHVVHKDLATRNVLVFDKLNVKISDLGLFREVY  175 (283)
T ss_pred             HHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHH---cCccccccchhheEecCCCceEecccccccccc
Confidence            63                 2347888999999999999999999   999999999999999999999999999987653


Q ss_pred             ccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhcc
Q 044746          133 REHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEISE  189 (202)
Q Consensus       133 ~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~~  189 (202)
                      ............+++.|+|||.+....++.++|+||+|++++||++ |.+||.+....
T Consensus       176 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~  233 (283)
T cd05091         176 AADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ  233 (283)
T ss_pred             cchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCHH
Confidence            3222222233345788999999988889999999999999999998 88898765443

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.95  E-value=3.2e-28  Score=191.65  Aligned_cols=175  Identities=20%  Similarity=0.224  Sum_probs=138.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++++..+++.++.|+.....  ..+...++..|.......+|++++.      ......+++++++++++..+   ..
T Consensus        17 v~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~---~~   91 (279)
T cd06619          17 VYKAYHLLTRRILAVKVIPLDI--TVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFMDGGSLDVY---RK   91 (279)
T ss_pred             EEEEEEcCCCcEEEEEEEecCC--ChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecCCCCChHHh---hc
Confidence            6888888888888888654321  1112234666666677778887763      23345578889999988654   35


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++.......    .....|+..|+|||+
T Consensus        92 ~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~y~aPE~  164 (279)
T cd06619          92 IPEHVLGRIAVAVVKGLTYLWS---LKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSI----AKTYVGTNAYMAPER  164 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---CCEeeCCCCHHHEEECCCCCEEEeeCCcceeccccc----ccCCCCChhhcCcee
Confidence            7888999999999999999999   999999999999999999999999999997543221    233467899999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +.+..++.++|+||+|+++|++++|+.||....
T Consensus       165 ~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~  197 (279)
T cd06619         165 ISGEQYGIHSDVWSLGISFMELALGRFPYPQIQ  197 (279)
T ss_pred             ecCCCCCCcchHHHHHHHHHHHHhCCCCchhhc
Confidence            998889999999999999999999999997543

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=3.1e-28  Score=191.02  Aligned_cols=180  Identities=20%  Similarity=0.205  Sum_probs=145.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++++..+++.++.|+.....  .......+..|.......+|++++.      .+....++++++.+++|..+.....
T Consensus        17 v~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~   94 (274)
T cd06609          17 VYKAIDKRTNQVVAIKVIDLEE--AEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKPGK   94 (274)
T ss_pred             EEEEEECCCCeEEEEEEeeccc--cchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEeeCCCcHHHHHhhcC
Confidence            5788888888888877654321  1122234556666666777887653      3345568889999999999998889


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++..+..++.|++.|+.|||+   .+++|+||+|+||+++.++.++++|||+++.......  ......+++.|+|||.
T Consensus        95 ~~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~y~~PE~  169 (274)
T cd06609          95 LDETYIAFILREVLLGLEYLHE---EGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMS--KRNTFVGTPFWMAPEV  169 (274)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEEcccccceeeccccc--ccccccCCccccChhh
Confidence            9999999999999999999999   9999999999999999999999999999987654321  1233456888999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +.+..++.++|+||+|+++|++++|++||....
T Consensus       170 ~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~  202 (274)
T cd06609         170 IKQSGYDEKADIWSLGITAIELAKGEPPLSDLH  202 (274)
T ss_pred             hccCCCCchhhHHHHHHHHHHHHhCCCCcccCc
Confidence            998889999999999999999999999997544

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.95  E-value=3.2e-28  Score=191.85  Aligned_cols=155  Identities=20%  Similarity=0.293  Sum_probs=125.7

Q ss_pred             ccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc------------------CCCCHHHHHHHHH
Q 044746           30 IRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK------------------NILGFGQLREIEV   85 (202)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~~~~~~~~   85 (202)
                      ..+..|.......+|+|++.      .+...+++++++.+++|..++..                  ..+++.+...++.
T Consensus        52 ~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  131 (283)
T cd05090          52 GEFQQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAI  131 (283)
T ss_pred             HHHHHHHHHHhhCCCCCeeeEEEEEecCCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHH
Confidence            34666777777888888763      34556788999999999887731                  2478889999999


Q ss_pred             HHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhh
Q 044746           86 STSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCD  165 (202)
Q Consensus        86 ~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~D  165 (202)
                      |++.||.|||+   ++++||||||+||+++.++.++|+|||+++...............++..|+|||++.+..++.++|
T Consensus       132 ~i~~al~~lH~---~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  208 (283)
T cd05090         132 QIAAGMEYLSS---HFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSD  208 (283)
T ss_pred             HHHHHHHHHHh---cCeehhccccceEEEcCCCcEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhh
Confidence            99999999999   999999999999999999999999999998653332222223334467899999998888999999


Q ss_pred             HHHHHHHHHHHHc-CCCCCcchh
Q 044746          166 VFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       166 iws~G~~l~el~~-g~~p~~~~~  187 (202)
                      +||||++++||++ |..||....
T Consensus       209 v~slG~il~el~~~g~~p~~~~~  231 (283)
T cd05090         209 IWSFGVVLWEIFSFGLQPYYGFS  231 (283)
T ss_pred             hHHHHHHHHHHHcCCCCCCCCCC
Confidence            9999999999998 999997644

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.95  E-value=3.2e-28  Score=194.04  Aligned_cols=185  Identities=18%  Similarity=0.218  Sum_probs=141.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++...++.|+.|...............+..|.......+|++++.      ..+...++++++++++|..++.. .
T Consensus        17 v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~   96 (305)
T cd05609          17 VYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVMEYVEGGDCATLLKNIG   96 (305)
T ss_pred             EEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEecCCCCcHHHHHHHcC
Confidence            5778888877777777644332222222334556666666778887653      33445789999999999888754 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc-------------cccc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT-------------HITS  140 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~-------------~~~~  140 (202)
                      .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++++|||+++.......             ....
T Consensus        97 ~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (305)
T cd05609          97 ALPVDMARMYFAETVLALEYLHN---YGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLD  173 (305)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCchHHEEECCCCCEEEeeCCCccccCcCccccccccccccchhhccc
Confidence            68999999999999999999999   9999999999999999999999999998864211100             0011


Q ss_pred             CCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          141 TGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       141 ~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ....++..|+|||.+....++.++|+||||++++|+++|+.||.+...
T Consensus       174 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~  221 (305)
T cd05609         174 KQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTP  221 (305)
T ss_pred             cCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            123568889999999888899999999999999999999999976543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.95  E-value=3.1e-28  Score=190.15  Aligned_cols=182  Identities=17%  Similarity=0.250  Sum_probs=140.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc---
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK---   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~---   71 (202)
                      ||++++..++..++.|..............++..|.......+|++++.      ..+...+++++..+++|..++.   
T Consensus        18 v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~   97 (267)
T cd08229          18 VYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFK   97 (267)
T ss_pred             EEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEEEecCCCCHHHHHHHhh
Confidence            5778876666666666433322222222335666767777778887663      3345568888999999988764   


Q ss_pred             --cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           72 --KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        72 --~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                        ...+++..+..++.|++.||.|||+   ++++|+||||+||+++.++.++++|||++.........  .....|+..|
T Consensus        98 ~~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~  172 (267)
T cd08229          98 KQKRLIPEKTVWKYFVQLCSALEHMHS---RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTA--AHSLVGTPYY  172 (267)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEECcchhhhccccCCcc--cccccCCcCc
Confidence              3458999999999999999999999   99999999999999999999999999998765432211  1234578899


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +|||.+.+..++.++|+||+|+++++|++|..||....
T Consensus       173 ~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  210 (267)
T cd08229         173 MSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK  210 (267)
T ss_pred             cCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCccccc
Confidence            99999988889999999999999999999999997544

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.95  E-value=2.5e-28  Score=193.96  Aligned_cols=152  Identities=25%  Similarity=0.314  Sum_probs=119.3

Q ss_pred             cCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhcc-----------------CCCCHHHHHHHHHH
Q 044746           31 RFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-----------------NILGFGQLREIEVS   86 (202)
Q Consensus        31 ~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-----------------~~~~~~~~~~~~~~   86 (202)
                      .+..|....... +|++++.      ..+...+++++.++++|..++..                 ..+++..+..++.|
T Consensus        48 ~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~q  127 (297)
T cd05089          48 DFAGELEVLCKLGHHPNIINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASD  127 (297)
T ss_pred             HHHHHHHHHHhhcCCCchhheEEEEccCCcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHH
Confidence            355554444444 6787653      33446788999999999888743                 24888999999999


Q ss_pred             HHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhH
Q 044746           87 TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDV  166 (202)
Q Consensus        87 i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Di  166 (202)
                      ++.||+|||+   ++++||||||+||+++.++.++|+|||++........   ......+..|+|||++....++.++|+
T Consensus       128 i~~al~~lH~---~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Dv  201 (297)
T cd05089         128 VATGMQYLSE---KQFIHRDLAARNVLVGENLASKIADFGLSRGEEVYVK---KTMGRLPVRWMAIESLNYSVYTTKSDV  201 (297)
T ss_pred             HHHHHHHHHH---CCcccCcCCcceEEECCCCeEEECCcCCCccccceec---cCCCCcCccccCchhhccCCCCchhhH
Confidence            9999999999   9999999999999999999999999999864321111   111122557999999988889999999


Q ss_pred             HHHHHHHHHHHc-CCCCCcchhc
Q 044746          167 FSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       167 ws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |||||+++||++ |..||.....
T Consensus       202 wSlG~il~el~t~g~~pf~~~~~  224 (297)
T cd05089         202 WSFGVLLWEIVSLGGTPYCGMTC  224 (297)
T ss_pred             HHHHHHHHHHHcCCCCCCCCCCH
Confidence            999999999997 9999976543

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.95  E-value=4.2e-28  Score=188.93  Aligned_cols=179  Identities=24%  Similarity=0.347  Sum_probs=136.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc------cccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV------GSEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++....+..++.+.+....     .....+..|.......+|++++      .......++++++++++|..++..  
T Consensus        22 v~~~~~~~~~~v~iK~~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   96 (261)
T cd05072          22 VWMGYYNNSTKVAVKTLKPGT-----MSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDE   96 (261)
T ss_pred             EEEEEecCCceEEEEEccCCc-----hhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecCCCCcHHHHHHHhc
Confidence            567776555444333332211     1123466677777778888766      244556688999999999888753  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++++|||++......... ......++..|+|
T Consensus        97 ~~~~~~~~~~~~~~~l~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~a  172 (261)
T cd05072          97 GGKVLLPKLIDFSAQIAEGMAYIER---KNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYT-AREGAKFPIKWTA  172 (261)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhhEEecCCCcEEECCCccceecCCCcee-ccCCCccceecCC
Confidence             458899999999999999999999   99999999999999999999999999999865432221 1122334678999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ||++....++.++|+||+|+++|++++ |+.||.....
T Consensus       173 PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~  210 (261)
T cd05072         173 PEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSN  210 (261)
T ss_pred             HHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCH
Confidence            999988889999999999999999998 9999976443

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.95  E-value=3.3e-28  Score=189.58  Aligned_cols=181  Identities=22%  Similarity=0.299  Sum_probs=145.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++++...++.++.|+..............+..|.......+|++++.      .+....+++++.++++|..++.+. 
T Consensus         9 v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   88 (262)
T cd05572           9 VELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGELWTILRDRG   88 (262)
T ss_pred             EEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcHHHHHhhcC
Confidence            5788887777777777654433332233345667777777778887753      445567889999999999887654 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .++...+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++.......   ......+++.|++||
T Consensus        89 ~l~~~~~~~~~~~i~~~l~~lH~---~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~---~~~~~~~~~~~~~PE  162 (262)
T cd05572          89 LFDEYTARFYIACVVLAFEYLHN---RGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQ---KTWTFCGTPEYVAPE  162 (262)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCHHHEEEcCCCCEEEeeCCcccccCccc---ccccccCCcCccChh
Confidence            58999999999999999999999   999999999999999999999999999998654332   112345688999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      .+....++.++|+||+|+++|++++|..||....
T Consensus       163 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  196 (262)
T cd05572         163 IILNKGYDFSVDYWSLGILLYELLTGRPPFGEDD  196 (262)
T ss_pred             HhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCC
Confidence            9988888999999999999999999999997665

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.95  E-value=2.9e-28  Score=191.52  Aligned_cols=155  Identities=19%  Similarity=0.278  Sum_probs=124.6

Q ss_pred             cCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-----------CCCCHHHHHHHHHHHHHHHHH
Q 044746           31 RFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-----------NILGFGQLREIEVSTSKGIAY   93 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~~~i~~~l~~   93 (202)
                      .+..|.......+|++++.      .++...++++++++++|..++..           ..+++..+..++.|++.||.|
T Consensus        55 ~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  134 (277)
T cd05062          55 EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAY  134 (277)
T ss_pred             HHHHHHHHHHhCCCCCeeeEEEEEcCCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHH
Confidence            4556666677778887752      44556788999999999888743           235778899999999999999


Q ss_pred             HHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHH
Q 044746           94 LHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLL  173 (202)
Q Consensus        94 lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l  173 (202)
                      ||+   .+++|+||||+||+++.++.++++|||+++...............+++.|+|||.+.+..++.++|+||||+++
T Consensus       135 lH~---~~~vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l  211 (277)
T cd05062         135 LNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVL  211 (277)
T ss_pred             HHH---CCcccCCcchheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHH
Confidence            999   99999999999999999999999999998754433222222223447789999999888899999999999999


Q ss_pred             HHHHc-CCCCCcchhc
Q 044746          174 FEVVG-RRRNLEKEIS  188 (202)
Q Consensus       174 ~el~~-g~~p~~~~~~  188 (202)
                      +|+++ |..||.....
T Consensus       212 ~el~~~~~~p~~~~~~  227 (277)
T cd05062         212 WEIATLAEQPYQGMSN  227 (277)
T ss_pred             HHHHcCCCCCCCCCCH
Confidence            99999 7899876543

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.95  E-value=8e-28  Score=196.01  Aligned_cols=167  Identities=20%  Similarity=0.271  Sum_probs=130.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc--c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK--K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~--~   72 (202)
                      ||++++...+..|+.|+....         ....|..+....+|++++.      .+....++++++. ++|..++.  .
T Consensus        82 Vy~~~~~~~~~~valK~~~~~---------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~  151 (357)
T PHA03209         82 VFVATKPGQPDPVVLKIGQKG---------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHYS-SDLYTYLTKRS  151 (357)
T ss_pred             EEEEEECCCCceEEEEeCCcc---------ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEccC-CcHHHHHHhcc
Confidence            688888888888887763221         2234666777888898774      3334456667665 56666553  3


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++.++..++.|++.||.|||+   ++|+||||||+||+++.++.++|+|||+++......   ......||+.|+||
T Consensus       152 ~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~---~~~~~~gt~~y~aP  225 (357)
T PHA03209        152 RPLPIDQALIIEKQILEGLRYLHA---QRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAP---AFLGLAGTVETNAP  225 (357)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEecCccccccccCc---ccccccccccccCC
Confidence            468999999999999999999999   999999999999999999999999999987532221   12334579999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCC
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNL  183 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~  183 (202)
                      |++.+..++.++|+||+||++|||+++..|+
T Consensus       226 E~~~~~~~~~~~DiwSlGvvl~ell~~~~~~  256 (357)
T PHA03209        226 EVLARDKYNSKADIWSAGIVLFEMLAYPSTI  256 (357)
T ss_pred             eecCCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence            9999889999999999999999999865554

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.95  E-value=3.6e-28  Score=190.12  Aligned_cols=182  Identities=19%  Similarity=0.212  Sum_probs=136.2

Q ss_pred             CCccccC---CCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNR---GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++...   .....|+.|..+....  ......|..|.......+|++++.      .++...++++++++++|..++.
T Consensus        21 V~~~~~~~~~~~~~~vaik~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~   98 (266)
T cd05064          21 LCRGCLKLPSKRELPVAIHTLRAGCS--DKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIVTEYMSNGALDSFLR   98 (266)
T ss_pred             EEEEEEecCCCceeeEEEEecCCCCC--HHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEEEEeCCCCcHHHHHH
Confidence            4555432   3445666665433211  111234556666666678888763      4556779999999999998876


Q ss_pred             c--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           72 K--NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        72 ~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                      .  ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++++|||.+......... ......++..|
T Consensus        99 ~~~~~l~~~~~~~~~~~i~~al~~lH~---~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y  174 (266)
T cd05064          99 KHEGQLVAGQLMGMLPGLASGMKYLSE---MGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAIY-TTMSGKSPVLW  174 (266)
T ss_pred             hCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeeccccHhhEEEcCCCcEEECCCcccccccccchh-cccCCCCceee
Confidence            5  368999999999999999999999   99999999999999999999999999987643222111 11122346789


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      +|||.+.+..++.++|+||+||+++|+++ |++||.....
T Consensus       175 ~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~  214 (266)
T cd05064         175 AAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSG  214 (266)
T ss_pred             cCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCH
Confidence            99999988899999999999999999775 9999976543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=4.5e-28  Score=188.63  Aligned_cols=179  Identities=22%  Similarity=0.265  Sum_probs=138.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcH-HHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSP-QRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||+|.+...++.++.|+.+............+..+ .......+|++++.      .++..+++++++.+++|..++.. 
T Consensus        12 v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~   91 (260)
T cd05611          12 VYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNGGDCASLIKTL   91 (260)
T ss_pred             EEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCCCCHHHHHHHc
Confidence            68888888888888776543322111112222233 33334446676553      34556789999999999988855 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++.....      .....+++.|++|
T Consensus        92 ~~~~~~~~~~i~~qi~~aL~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~------~~~~~~~~~y~~p  162 (260)
T cd05611          92 GGLPEDWAKQYIAEVVLGVEDLHQ---RGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE------NKKFVGTPDYLAP  162 (260)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCcEEEeecccceeccc------cccCCCCcCccCh
Confidence            468999999999999999999999   9999999999999999999999999998875432      1223468899999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |.+.+..++.++|+||+|++++++++|+.||.....
T Consensus       163 e~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~  198 (260)
T cd05611         163 ETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETP  198 (260)
T ss_pred             hhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCH
Confidence            999888889999999999999999999999975543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.95  E-value=4.8e-28  Score=191.51  Aligned_cols=155  Identities=20%  Similarity=0.300  Sum_probs=125.2

Q ss_pred             cCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC--------------CCCHHHHHHHHHHHHHH
Q 044746           31 RFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN--------------ILGFGQLREIEVSTSKG   90 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~~~~~~~~~i~~~   90 (202)
                      .+..|.......+|++++.      .++...++++++.+++|..++...              .+++..+..++.|++.|
T Consensus        53 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~a  132 (288)
T cd05093          53 DFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAG  132 (288)
T ss_pred             HHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence            4556666666777887652      445567889999999998877432              38999999999999999


Q ss_pred             HHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHH
Q 044746           91 IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFG  170 (202)
Q Consensus        91 l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G  170 (202)
                      |.|||+   .+++||||||+||+++.++.++|+|||+++...............+++.|+|||.+.+..++.++|+||||
T Consensus       133 L~~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG  209 (288)
T cd05093         133 MVYLAS---QHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLG  209 (288)
T ss_pred             HHHHHh---CCeeecccCcceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHH
Confidence            999999   99999999999999999999999999999755332221122223346789999999988899999999999


Q ss_pred             HHHHHHHc-CCCCCcchhc
Q 044746          171 MLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       171 ~~l~el~~-g~~p~~~~~~  188 (202)
                      +++++|++ |.+||.....
T Consensus       210 ~il~~l~t~g~~p~~~~~~  228 (288)
T cd05093         210 VVLWEIFTYGKQPWYQLSN  228 (288)
T ss_pred             HHHHHHHhCCCCCCCCCCH
Confidence            99999998 9999976543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.95  E-value=3.6e-28  Score=195.65  Aligned_cols=182  Identities=13%  Similarity=0.099  Sum_probs=137.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||+++++.+++.||.|..+.... .......+..|..+....+|+|++.      ..+..+++++++++++|..++..  
T Consensus        16 v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~   94 (327)
T cd08227          16 VNLARYKPTGEYVTVRRINLEAC-TNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHF   94 (327)
T ss_pred             EEEEeecccCcEEEEEEechhhc-cHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccCCCcHHHHHHhhc
Confidence            67888888888888876433211 1112233555666777778998874      33456788999999999888743  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc-cc----ccCCCCCC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT-HI----TSTGRRRT  146 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~-~~----~~~~~~gt  146 (202)
                       ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++++||+.......... ..    ......++
T Consensus        95 ~~~l~~~~~~~i~~qi~~~L~~LH~---~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (327)
T cd08227          95 MDGMSELAIAYILQGVLKALDYIHH---MGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKV  171 (327)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCChhhEEEecCCcEEEcccchhhccccccccccccccccccccce
Confidence             358999999999999999999999   9999999999999999999999999986543221110 00    01122456


Q ss_pred             CcccCCcccCC--CCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          147 PGCEAPELWMP--YSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       147 ~~y~aPe~~~~--~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      ..|+|||++.+  ..++.++|+||+||+++|+++|+.||...
T Consensus       172 ~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  213 (327)
T cd08227         172 LPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDM  213 (327)
T ss_pred             ecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence            78999999876  45889999999999999999999999753

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.95  E-value=4.4e-28  Score=189.39  Aligned_cols=179  Identities=22%  Similarity=0.230  Sum_probs=140.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||++++...+..++.|+.+.....   ....+..|.......+|++++.      ..+...++++++++++|..++. .+
T Consensus        25 v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~  101 (267)
T cd06645          25 VYKARNVNTGELAAIKVIKLEPGE---DFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFCGGGSLQDIYHVTG  101 (267)
T ss_pred             EEEEEEcCCCcEEEEEEEecCchh---HHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEeccCCCcHHHHHHhcC
Confidence            578888888888888765432211   1223455666677778887653      3455678899999999988775 44


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.++..++.|++.|+.|||+   .+++|+||||+||+++.++.++|+|||++........  ......|++.|+|||
T Consensus       102 ~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE  176 (267)
T cd06645         102 PLSESQIAYVSRETLQGLYYLHS---KGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIA--KRKSFIGTPYWMAPE  176 (267)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECcceeeeEccCccc--ccccccCcccccChh
Confidence            69999999999999999999999   9999999999999999999999999999876543221  123346789999999


Q ss_pred             ccC---CCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWM---PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~---~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ++.   ...++.++|+||+||++++|++|++||....
T Consensus       177 ~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~  213 (267)
T cd06645         177 VAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLH  213 (267)
T ss_pred             hhccccCCCCCchhhhHHHHHHHHHHhcCCCCccccc
Confidence            874   4457889999999999999999999986544

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.95  E-value=3.9e-28  Score=190.91  Aligned_cols=183  Identities=22%  Similarity=0.231  Sum_probs=134.0

Q ss_pred             CCccccCC-----CcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhh
Q 044746            1 MEKPRNRG-----STRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++....     ....|+.|........  .....|..|.......+|++++.      ......++++++.+++|..+
T Consensus        22 vy~~~~~~~~~~~~~~~v~ik~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~   99 (277)
T cd05036          22 VYEGLYRGRDGDAVELQVAVKTLPESCSE--QDESDFLMEALIMSKFNHQNIVRLIGVSFERLPRFILLELMAGGDLKSF   99 (277)
T ss_pred             EEEEEEecCCCCCCceeEEEEEcCCCCCH--HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCcEEEEecCCCCCHHHH
Confidence            46666654     4455555543322111  11233556666677778887653      23345688899999999988


Q ss_pred             hccC--------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC---ceEEeeeecceeccccCccc
Q 044746           70 CKKN--------ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF---FPKAADFGLAKLYNREHTHI  138 (202)
Q Consensus        70 ~~~~--------~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~---~~kl~dfgl~~~~~~~~~~~  138 (202)
                      +...        .+++..+..++.|++.||.|||+   ++++|+||||+||+++.++   .++|+|||+++.........
T Consensus       100 i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~  176 (277)
T cd05036         100 LRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEE---NHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYR  176 (277)
T ss_pred             HHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccchheEEEeccCCCcceEeccCccccccCCcccee
Confidence            7443        48999999999999999999999   9999999999999998654   68999999998653222211


Q ss_pred             ccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       139 ~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      .......+..|+|||++.+..++.++|||||||+++||++ |+.||.....
T Consensus       177 ~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~  227 (277)
T cd05036         177 KGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTN  227 (277)
T ss_pred             cCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCH
Confidence            1122233567999999988889999999999999999997 9999986543

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=4.5e-28  Score=193.96  Aligned_cols=185  Identities=21%  Similarity=0.247  Sum_probs=142.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++...++.++.|...............+..|.......+|++++.      .+...+++++++.+++|..+...  
T Consensus        17 vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~   96 (316)
T cd05574          17 VFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMDYCPGGELFRLLQRQP   96 (316)
T ss_pred             EEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEEecCCCCHHHHHHhCC
Confidence            5788888777777776554332222223345666666777777887652      34456788999999999988754  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc--------------
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH--------------  137 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~--------------  137 (202)
                       ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++.........              
T Consensus        97 ~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  173 (316)
T cd05574          97 GKCLSEEVARFYAAEVLLALEYLHL---LGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSV  173 (316)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHH---CCeeccCCChHHeEEcCCCCEEEeecchhhcccccccccccccccccccccc
Confidence             458999999999999999999999   99999999999999999999999999998754221100              


Q ss_pred             -------------cccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          138 -------------ITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       138 -------------~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                                   .......|+..|+|||++.+..++.++|+||+|+++|++++|+.||.....
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~  237 (316)
T cd05574         174 NSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNR  237 (316)
T ss_pred             cccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCch
Confidence                         011123578889999999988899999999999999999999999975543

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.95  E-value=5.1e-28  Score=187.62  Aligned_cols=182  Identities=24%  Similarity=0.325  Sum_probs=140.9

Q ss_pred             CCccccCCC---cceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGS---TRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++.+...   ...++.|+........  ....+..|.......+|++++.      ......++++++++++|..++.
T Consensus        11 v~~~~~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~   88 (262)
T cd00192          11 VYKGKLKGKDGKTTEVAVKTLKEDASEE--ERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLR   88 (262)
T ss_pred             EEEEEEecCCCCCceEEeEeeccccchh--HHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccCCcHHHHHh
Confidence            466666654   6666666544332221  2334555656666666776552      3455678899999999999886


Q ss_pred             c----------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccC
Q 044746           72 K----------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST  141 (202)
Q Consensus        72 ~----------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~  141 (202)
                      .          ..+++.++..++.|++.||.|||+   ++++|+||+|+||+++.++.++|+|||.+.............
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~  165 (262)
T cd00192          89 KSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLAS---KKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKT  165 (262)
T ss_pred             hccccccccccccCCHHHHHHHHHHHHHHHHHHHc---CCcccCccCcceEEECCCCcEEEccccccccccccccccccc
Confidence            5          568999999999999999999999   999999999999999999999999999998765433222233


Q ss_pred             CCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       142 ~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      ...+++.|+|||.+....++.++|+||+|++++++++ |+.||....
T Consensus       166 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~  212 (262)
T cd00192         166 GGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLS  212 (262)
T ss_pred             CCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCC
Confidence            4456889999999988889999999999999999999 699997654

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.95  E-value=2.1e-29  Score=221.62  Aligned_cols=185  Identities=23%  Similarity=0.213  Sum_probs=148.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccccc------ceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSEDT------ETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||-+.+...++..|.|--+..... .........|..+....+|||++...+.      ..++++|+++|+|......+.
T Consensus      1251 VYtavN~~tGellAvKEI~iq~~~-~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEyC~~GsLa~ll~~gr 1329 (1509)
T KOG4645|consen 1251 VYTAVNLDTGELLAVKEIKIQDSD-HKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEYCEGGSLASLLEHGR 1329 (1509)
T ss_pred             eEEeecCCccchhhhhhhhcCccc-cccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHHhccCcHHHHHHhcc
Confidence            567777778888887654333332 4444556777888888999999865544      348899999999999987665


Q ss_pred             -CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc--cccCCCCCCCcccC
Q 044746           75 -LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH--ITSTGRRRTPGCEA  151 (202)
Q Consensus        75 -~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~--~~~~~~~gt~~y~a  151 (202)
                       .++...+.+..|++.|+.|||+   .||+|||+||.||+++.+|.+|++|||.|..+......  .......||+.|||
T Consensus      1330 i~dE~vt~vyt~qll~gla~LH~---~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMA 1406 (1509)
T KOG4645|consen 1330 IEDEMVTRVYTKQLLEGLAYLHE---HGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMA 1406 (1509)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHh---cCceecCCCccceeeecCCcEEeecccceeEecCchhcCCHHHHhhcCCchhcC
Confidence             6777788899999999999999   99999999999999999999999999999977654321  12334678999999


Q ss_pred             CcccCCC---CCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          152 PELWMPY---SVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       152 Pe~~~~~---~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      ||++.+.   ....++||||+||++.||+||+.||...+.+
T Consensus      1407 PEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne 1447 (1509)
T KOG4645|consen 1407 PEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNE 1447 (1509)
T ss_pred             chhhcccccCCCCcchhhhcccceEEEeecCCCchhhccch
Confidence            9999863   4567899999999999999999999866554

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.95  E-value=4.3e-28  Score=187.99  Aligned_cols=182  Identities=22%  Similarity=0.258  Sum_probs=142.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++.+...+..++.|...... ........+..+.......+|++++.      ......++++++++++|..++..  
T Consensus        16 v~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   94 (256)
T cd08529          16 VFKVVRKADKRVYAMKQIDLSK-MNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQR   94 (256)
T ss_pred             EEEEEEcCCCcEEEEEEeehhh-CCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEeCCCCcHHHHHHHhc
Confidence            5777777666766666533221 11122344666666777788887763      33456788999999999888754  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||+++........  .....|++.|+|
T Consensus        95 ~~~~~~~~~~~i~~~l~~al~~lH~---~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~--~~~~~~~~~y~a  169 (256)
T cd08529          95 GRPLPEDQVWRFFIQILLGLAHLHS---KKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNF--ANTIVGTPYYLS  169 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEEeCCCCEEEcccccceeccCccch--hhccccCccccC
Confidence             468999999999999999999999   99999999999999999999999999998865433221  123456889999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ||++.+..++.++|+||||+++++|++|+.||....+
T Consensus       170 PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  206 (256)
T cd08529         170 PELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQ  206 (256)
T ss_pred             HHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCH
Confidence            9999988899999999999999999999999976553

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.95  E-value=6.1e-28  Score=188.48  Aligned_cols=183  Identities=19%  Similarity=0.145  Sum_probs=139.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhc--cCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAME--MDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++++...+..|+.|.........  ......+..|.......+|++++..        .....++++++++++|..++
T Consensus        18 v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l   97 (265)
T cd06652          18 VYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTLSIFMEHMPGGSIKDQL   97 (265)
T ss_pred             EEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceEEEEEEecCCCcHHHHH
Confidence            5777777777777776543221111  1112345566677777788877631        12344678899999998887


Q ss_pred             cc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc-ccccCCCCCCCc
Q 044746           71 KK-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT-HITSTGRRRTPG  148 (202)
Q Consensus        71 ~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~gt~~  148 (202)
                      .. ..+++.....++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++........ ........|+..
T Consensus        98 ~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~  174 (265)
T cd06652          98 KSYGALTENVTRKYTRQILEGVSYLHS---NMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPY  174 (265)
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEecCCCCEEECcCccccccccccccccccccCCCCcc
Confidence            54 458999999999999999999999   9999999999999999999999999999875432111 111223457889


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      |+|||.+.+..++.++|+||||+++||+++|+.||...
T Consensus       175 y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~  212 (265)
T cd06652         175 WMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEF  212 (265)
T ss_pred             ccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCcc
Confidence            99999998888899999999999999999999999754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.95  E-value=4.2e-28  Score=190.72  Aligned_cols=181  Identities=19%  Similarity=0.224  Sum_probs=142.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++.+...+..++.|+..............+..|..+....+|++++.      ..+..+++++++++++|..++.. .
T Consensus         9 vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   88 (277)
T cd05577           9 VCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDLKYHIYNVG   88 (277)
T ss_pred             EEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcHHHHHHHcC
Confidence            6788887777777776654332222223334455666677778887652      44567789999999999877643 2


Q ss_pred             --CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           74 --ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        74 --~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                        .+++.++..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||.+........   .....++..|+|
T Consensus        89 ~~~~~~~~~~~~~~ql~~~l~~lH~---~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~y~~  162 (277)
T cd05577          89 EPGFPEARAIFYAAQIICGLEHLHQ---RRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKK---IKGRAGTPGYMA  162 (277)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEEccCcchhhhccCCc---cccccCCCCcCC
Confidence              58999999999999999999999   9999999999999999999999999999875433211   123446788999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ||.+.+..++.++|+||+|++++++++|+.||....
T Consensus       163 PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  198 (277)
T cd05577         163 PEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRK  198 (277)
T ss_pred             HHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCc
Confidence            999988888999999999999999999999997644

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.95  E-value=6.7e-28  Score=187.46  Aligned_cols=183  Identities=20%  Similarity=0.259  Sum_probs=136.0

Q ss_pred             CCccccCCCc---ceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGST---RFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++.....+   ..++.|........  .....+..|.......+|++++.     .+....++++++.+++|..++..
T Consensus        11 v~~~~~~~~~~~~~~~~iK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~~L~~~l~~   88 (257)
T cd05060          11 VVKGVYLMKSGKEVEVAVKTLKQEHIA--AGKKEFLREASVMAQLDHPCIVRLIGVCKGEPLMLVMELAPLGPLLKYLKK   88 (257)
T ss_pred             EEEeEeeccCCCcceEEEEecccccch--HHHHHHHHHHHHHHhcCCCCeeeEEEEEcCCceEEEEEeCCCCcHHHHHHh
Confidence            4555543333   45555543322211  12234555666666777887653     33445688889999999988865


Q ss_pred             C-CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccc-cCCCCCCCccc
Q 044746           73 N-ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCE  150 (202)
Q Consensus        73 ~-~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~-~~~~~gt~~y~  150 (202)
                      . .+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||+++.......... .....++..|+
T Consensus        89 ~~~~~~~~~~~~~~qi~~~l~~lh~---~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~  165 (257)
T cd05060          89 RREIPVSDLKELAHQVAMGMAYLES---KHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWY  165 (257)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhh---cCeeccCcccceEEEcCCCcEEeccccccceeecCCcccccccCcccccccc
Confidence            4 49999999999999999999999   9999999999999999999999999999986543322111 11222356799


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |||.+....++.++|+||||++++++++ |.+||....+
T Consensus       166 aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~  204 (257)
T cd05060         166 APECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKG  204 (257)
T ss_pred             CHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCH
Confidence            9999988889999999999999999998 9999976543

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.95  E-value=4.5e-28  Score=192.66  Aligned_cols=180  Identities=19%  Similarity=0.245  Sum_probs=143.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++.+...++.++.|......   ......+..|.......+|++++.      .+....++++++++++|..+.....
T Consensus        35 v~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~  111 (297)
T cd06656          35 VYTAIDIATGQEVAIKQMNLQQ---QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETC  111 (297)
T ss_pred             EEEEEECCCCCEEEEEEEecCc---cchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeecccCCCCHHHHHHhCC
Confidence            5778877667777776543221   112234556666677778887663      3445678899999999999998888


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++.++..++.|++.||.|||+   .+++||||||+||+++.++.++++|||++.........  .....+++.|+|||.
T Consensus       112 ~~~~~~~~~~~~l~~~L~~LH~---~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~  186 (297)
T cd06656         112 MDEGQIAAVCRECLQALDFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK--RSTMVGTPYWMAPEV  186 (297)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEECcCccceEccCCccC--cCcccCCccccCHHH
Confidence            9999999999999999999999   99999999999999999999999999998765433221  123456889999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +.+..++.++|+||+|++++++++|++||....+
T Consensus       187 ~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~  220 (297)
T cd06656         187 VTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENP  220 (297)
T ss_pred             HcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCc
Confidence            9988889999999999999999999999976544

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.95  E-value=8.4e-28  Score=189.50  Aligned_cols=176  Identities=23%  Similarity=0.300  Sum_probs=135.5

Q ss_pred             ccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc--------ccceEEEEEccCCchhhhhccCCCC
Q 044746            5 RNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE--------DTETYIKGFLAMGPFYLLCKKNILG   76 (202)
Q Consensus         5 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~   76 (202)
                      .....+..|+.|+.+....  ......+..|.......+|++++...        ....++++++++++|..++....++
T Consensus        28 ~~~~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~l~  105 (283)
T cd05080          28 ANDGTGEMVAVKTLKRECG--QQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKHKLN  105 (283)
T ss_pred             ccCCCCceEEEEEeccccC--hHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEEEecCCCCCCHHHHHHHcCCC
Confidence            3445556667666433211  11223455666677778888876422        2345788899999999999888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc-ccCCCCCCCcccCCccc
Q 044746           77 FGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-TSTGRRRTPGCEAPELW  155 (202)
Q Consensus        77 ~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~gt~~y~aPe~~  155 (202)
                      +.++..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||+++......... ......++..|+|||.+
T Consensus       106 ~~~~~~i~~~l~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~  182 (283)
T cd05080         106 LAQLLLFAQQICEGMAYLHS---QHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECL  182 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---CCeeccccChheEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHh
Confidence            99999999999999999999   999999999999999999999999999998654322211 11223346679999999


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          156 MPYSVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       156 ~~~~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      ....++.++|+||||++++||++|..||..
T Consensus       183 ~~~~~~~~~Di~slG~~l~el~tg~~p~~~  212 (283)
T cd05080         183 KENKFSYASDVWSFGVTLYELLTHCDSKQS  212 (283)
T ss_pred             cccCCCcccccHHHHHHHHHHHhCCCCCCC
Confidence            888899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.95  E-value=7.8e-28  Score=187.79  Aligned_cols=179  Identities=21%  Similarity=0.254  Sum_probs=137.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++.+...+..++.|+.+...    .....+..|.......+|++++.      ..+...++++++++++|..++..  
T Consensus        22 v~~~~~~~~~~~~~~K~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~   97 (263)
T cd05052          22 VYEGVWKKYSLTVAVKTLKEDT----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECN   97 (263)
T ss_pred             EEEEEEecCCceEEEEEecCCc----hHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeCCCCcHHHHHHhCC
Confidence            5677776667777776643221    11234555666666777887653      34445688999999999888753  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       ..+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||++.......... .....++..|+|
T Consensus        98 ~~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~-~~~~~~~~~y~a  173 (263)
T cd05052          98 RQEVNAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTA-HAGAKFPIKWTA  173 (263)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccCcceEEEcCCCcEEeCCCccccccccceeec-cCCCCCccccCC
Confidence             358999999999999999999999   999999999999999999999999999998654332211 112223567999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      ||.+.+..++.++|+||||++++||++ |..||....
T Consensus       174 PE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~  210 (263)
T cd05052         174 PESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID  210 (263)
T ss_pred             HHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCC
Confidence            999988889999999999999999998 999997644

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.95  E-value=5e-28  Score=189.28  Aligned_cols=155  Identities=20%  Similarity=0.239  Sum_probs=124.0

Q ss_pred             cCCcHHHHHHhcccccccccc------------ccceEEEEEccCCchhhhhc-------cCCCCHHHHHHHHHHHHHHH
Q 044746           31 RFTSPQRMIAADNFSNLVGSE------------DTETYIKGFLAMGPFYLLCK-------KNILGFGQLREIEVSTSKGI   91 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~~~------------~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~i~~~l   91 (202)
                      .+..|.......+|++++...            ....++++++.+++|..++.       ...+++..+..++.|++.||
T Consensus        47 ~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL  126 (273)
T cd05035          47 EFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGM  126 (273)
T ss_pred             HHHHHHHHHHhCCCCCeeeEEeeeccCCccccCcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHH
Confidence            456666667777888876321            12568889999999977762       23589999999999999999


Q ss_pred             HHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHH
Q 044746           92 AYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGM  171 (202)
Q Consensus        92 ~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~  171 (202)
                      .|||+   .+++||||||+||+++.++.++|+|||+++...............++..|+|||.+....++.++|+||+||
T Consensus       127 ~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~  203 (273)
T cd05035         127 EYLSN---RNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGV  203 (273)
T ss_pred             HHHHh---CCeeccccchheEEECCCCeEEECCccceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHH
Confidence            99999   999999999999999999999999999998654333222222233467899999998888999999999999


Q ss_pred             HHHHHHc-CCCCCcchhc
Q 044746          172 LLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       172 ~l~el~~-g~~p~~~~~~  188 (202)
                      +++|+++ |.+||.+..+
T Consensus       204 il~el~~~g~~p~~~~~~  221 (273)
T cd05035         204 TMWEIATRGQTPYPGVEN  221 (273)
T ss_pred             HHHHHHhCCCCCCCCCCH
Confidence            9999999 9999976543

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.95  E-value=3.6e-28  Score=188.72  Aligned_cols=180  Identities=24%  Similarity=0.325  Sum_probs=143.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||++++...++.++.|+............. ...|.......+|++++.      ......++++++.+++|..++. ..
T Consensus        15 v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~-~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~~~~~L~~~l~~~~   93 (260)
T PF00069_consen   15 VYKAKNKKNGQKVAVKIIDKSEIEEEEREE-NIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYCPGGSLQDYLQKNK   93 (260)
T ss_dssp             EEEEEETTTTEEEEEEEEESTTHHHHHHHH-HHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEETTEBHHHHHHHHS
T ss_pred             EEEEEECCCCeEEEEEEeccccccccccch-hhhhhhccccccccccccccccccccccccccccccccccccccccccc
Confidence            688999988877777765554433322211 122555555567887663      4555668999999999998886 77


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.+||+   .+++|+||||+||+++.++.++|+|||.+......  ........+++.|+|||
T Consensus        94 ~~~~~~~~~~~~qi~~~L~~Lh~---~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~--~~~~~~~~~~~~y~aPE  168 (260)
T PF00069_consen   94 PLSEEEILKIAYQILEALAYLHS---KGIVHRDIKPENILLDENGEVKLIDFGSSVKLSEN--NENFNPFVGTPEYMAPE  168 (260)
T ss_dssp             SBBHHHHHHHHHHHHHHHHHHHH---TTEEESSBSGGGEEESTTSEEEESSGTTTEESTST--TSEBSSSSSSGGGSCHH
T ss_pred             ccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccc--ccccccccccccccccc
Confidence            89999999999999999999999   99999999999999999999999999999754211  11233456689999999


Q ss_pred             ccC-CCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          154 LWM-PYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       154 ~~~-~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      ++. +...+.++|+||+|+++++|++|..||...
T Consensus       169 ~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~  202 (260)
T PF00069_consen  169 VLQQGKKYTRKSDIWSLGIILYELLTGKLPFEES  202 (260)
T ss_dssp             HHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTS
T ss_pred             cccccccccccccccccccccccccccccccccc
Confidence            998 778899999999999999999999999976

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.95  E-value=1.5e-27  Score=185.95  Aligned_cols=179  Identities=24%  Similarity=0.324  Sum_probs=135.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++.+.++. .++.|..+...    .....+..|.......+|++++.      ......++++++.+++|..++... 
T Consensus        22 v~~~~~~~~~-~v~iK~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~   96 (261)
T cd05068          22 VWEGLWNNTT-PVAVKTLKPGT----MDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGA   96 (261)
T ss_pred             EEEEEecCCe-EEEEEeeCCCc----ccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeecccCCcHHHHHhccC
Confidence            5677665544 45554432211    11234556666777778887763      334456888899999999888543 


Q ss_pred             --CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           74 --ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        74 --~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                        .+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||+++........ ...+...+..|+|
T Consensus        97 ~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~a  172 (261)
T cd05068          97 GRALKLPQLIDMAAQVASGMAYLEA---QNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYE-AREGAKFPIKWTA  172 (261)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCCcceEEEcCCCCEEECCcceEEEccCCccc-ccCCCcCceeccC
Confidence              48999999999999999999999   99999999999999999999999999999876532211 1112222457999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ||.+.+..++.++|+||||++++|+++ |+.||.+...
T Consensus       173 PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~  210 (261)
T cd05068         173 PEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTN  210 (261)
T ss_pred             ccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH
Confidence            999988889999999999999999999 9999976543

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.95  E-value=1.1e-27  Score=187.01  Aligned_cols=179  Identities=26%  Similarity=0.361  Sum_probs=137.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhcc---
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKK---   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~---   72 (202)
                      ||++++.++.. |+.|..+...    ....++..|.......+|++++.     ......++++++.+++|..++..   
T Consensus        22 v~~~~~~~~~~-valK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~   96 (262)
T cd05071          22 VWMGTWNGTTR-VAIKTLKPGT----MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMG   96 (262)
T ss_pred             EEEEEecCCce-EEEEecccCc----cCHHHHHHHHHHHHhCCCCCcceEEEEECCCCcEEEEEcCCCCcHHHHHhhccc
Confidence            57777666555 4544433211    11234666666777778887652     23445688999999999888864   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|+|+   .+++|+||||+||+++.++.++|+|||.+.......... .....++..|+||
T Consensus        97 ~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~-~~~~~~~~~y~~P  172 (262)
T cd05071          97 KYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA-RQGAKFPIKWTAP  172 (262)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH---CCccccccCcccEEEcCCCcEEeccCCceeecccccccc-ccCCcccceecCH
Confidence            358999999999999999999999   999999999999999999999999999998654332211 1223456789999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |+..+..++.++|+||+|++++|+++ |+.||....+
T Consensus       173 E~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~  209 (262)
T cd05071         173 EAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN  209 (262)
T ss_pred             hHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCh
Confidence            99988889999999999999999999 8889876543

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.95  E-value=4.4e-28  Score=188.47  Aligned_cols=182  Identities=21%  Similarity=0.298  Sum_probs=147.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++++..++..++.|+..............+..|.......+|++++.      .+....++++++.+++|..++... 
T Consensus        16 v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   95 (258)
T cd05578          16 VCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVDLLLGGDLRYHLSQKV   95 (258)
T ss_pred             EEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEeCCCCCCHHHHHHhcC
Confidence            5788888777778877655433322233445666767777888998763      455677889999999999888766 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   ++++|+||+|+||+++.++.++|+|||++........   .....|+..|+|||
T Consensus        96 ~l~~~~~~~~~~~i~~~l~~lh~---~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~---~~~~~~~~~y~~PE  169 (258)
T cd05578          96 KFSEEQVKFWICEIVLALEYLHS---KGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTL---TTSTSGTPGYMAPE  169 (258)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeEEcCCCCEEEeecccccccCCCcc---ccccCCChhhcCHH
Confidence            89999999999999999999999   9999999999999999999999999999876543321   22345688999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .+....++.++|+||+|++++++++|+.||.....
T Consensus       170 ~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~  204 (258)
T cd05578         170 VLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSR  204 (258)
T ss_pred             HHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCc
Confidence            99888889999999999999999999999987653

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.95  E-value=1.1e-27  Score=188.79  Aligned_cols=180  Identities=20%  Similarity=0.271  Sum_probs=136.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..+++.++.|..+... ........+..|.......+|++++.      .+...++++++++ +++..+...  
T Consensus        16 v~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~~~~~~   93 (285)
T cd07861          16 VYKGRNKKTGQIVAMKKIRLES-EEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEFLS-MDLKKYLDSLP   93 (285)
T ss_pred             EEEEEECCCCcEEEEEEecccc-ccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEecCC-CCHHHHHhcCC
Confidence            6788887777777776543321 11122334556767777778887653      3455567788887 566665532  


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           73 --NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        73 --~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                        ..+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++........  ......+++.|+
T Consensus        94 ~~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~  168 (285)
T cd07861          94 KGQYMDAELVKSYLYQILQGILFCHS---RRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVR--VYTHEVVTLWYR  168 (285)
T ss_pred             CCCcCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCCHHHEEEcCCCcEEECcccceeecCCCcc--cccCCccccccc
Confidence              468999999999999999999999   9999999999999999999999999999975433221  122335588999


Q ss_pred             CCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          151 APELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       151 aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |||.+.+. .++.++|+||+|+++++|++|++||....
T Consensus       169 aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~  206 (285)
T cd07861         169 APEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDS  206 (285)
T ss_pred             ChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            99988654 57889999999999999999999997543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.95  E-value=6.6e-28  Score=188.40  Aligned_cols=180  Identities=23%  Similarity=0.220  Sum_probs=140.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||++++..+++.++.|+......   .....+..|.......+|++++.      ..+...++++++++++|..++. ..
T Consensus        25 vy~~~~~~~~~~~aik~~~~~~~---~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~  101 (267)
T cd06646          25 VYKARNLHTGELAAVKIIKLEPG---DDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYCGGGSLQDIYHVTG  101 (267)
T ss_pred             EEEEEECCCCeEEEEEEEecCcc---chHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCCCCCcHHHHHHhcC
Confidence            67888888888888877543211   11223555666777788888764      3344567889999999988764 45


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   .+++|||++|+||+++.++.++++|||++........  ......|++.|+|||
T Consensus       102 ~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE  176 (267)
T cd06646         102 PLSELQIAYVCRETLQGLAYLHS---KGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIA--KRKSFIGTPYWMAPE  176 (267)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCCEEECcCccceeeccccc--ccCccccCccccCHh
Confidence            68999999999999999999999   9999999999999999999999999999986543221  112345688999999


Q ss_pred             ccC---CCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWM---PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~---~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .+.   ...++.++|+||+|++++||++|++||....+
T Consensus       177 ~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~  214 (267)
T cd06646         177 VAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHP  214 (267)
T ss_pred             HcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccch
Confidence            874   34577899999999999999999999965543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.95  E-value=3.7e-28  Score=193.57  Aligned_cols=154  Identities=23%  Similarity=0.344  Sum_probs=124.8

Q ss_pred             cCCcHHHHHHhccccccccc-----cccceEEEEEccCCchhhhhccC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeE
Q 044746           31 RFTSPQRMIAADNFSNLVGS-----EDTETYIKGFLAMGPFYLLCKKN--ILGFGQLREIEVSTSKGIAYLHEECRQKIV  103 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~ii  103 (202)
                      .+..+.......+|+|++..     .....++++++++|+|..+....  .+++..+..++.|++.||.|||+   ++++
T Consensus        55 ~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~---~~iv  131 (303)
T cd05110          55 EFMDEALIMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEE---RRLV  131 (303)
T ss_pred             HHHHHHHHHHhCCCCCcccEEEEEcCCCceeeehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhh---cCee
Confidence            45566667777788887642     23345788899999998887543  58999999999999999999999   9999


Q ss_pred             EecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCC
Q 044746          104 HYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRN  182 (202)
Q Consensus       104 Hrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p  182 (202)
                      |+||||+||+++.++.+||+|||+++...............++..|+|||++.+..++.++|+||||+++||+++ |..|
T Consensus       132 H~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p  211 (303)
T cd05110         132 HRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKP  211 (303)
T ss_pred             ccccccceeeecCCCceEEccccccccccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999986543322222223345678999999988889999999999999999997 9999


Q ss_pred             Ccchh
Q 044746          183 LEKEI  187 (202)
Q Consensus       183 ~~~~~  187 (202)
                      |.+..
T Consensus       212 ~~~~~  216 (303)
T cd05110         212 YDGIP  216 (303)
T ss_pred             CCCCC
Confidence            97643

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.95  E-value=2.1e-27  Score=186.14  Aligned_cols=171  Identities=19%  Similarity=0.265  Sum_probs=132.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++++...+..++.|+........      ... .......+|++++.      ..+...++++++++++|..++... 
T Consensus        32 v~~~~~~~~~~~~~~k~~~~~~~~~------~e~-~~~~~~~~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~  104 (267)
T PHA03390         32 VSVLKHKPTQKLFVQKIIKAKNFNA------IEP-MVHQLMKDNPNFIKLYYSVTTLKGHVLIMDYIKDGDLFDLLKKEG  104 (267)
T ss_pred             EEEEEEcCCCcEEEEEEEehhhcch------hhH-HHHHHhhcCCCEEEEEEEEecCCeeEEEEEcCCCCcHHHHHHhcC
Confidence            5677776677777776643321111      111 11111225666542      344567889999999999988665 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC-ceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF-FPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~-~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      .+++.++..++.|++.||.|||+   .+++||||||+||+++.++ .++++|||+++.....      ....++..|+||
T Consensus       105 ~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~------~~~~~~~~y~aP  175 (267)
T PHA03390        105 KLSEAEVKKIIRQLVEALNDLHK---HNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTP------SCYDGTLDYFSP  175 (267)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEEeCCCCeEEEecCccceecCCC------ccCCCCCcccCh
Confidence            79999999999999999999999   8999999999999999888 9999999998765432      123468899999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |++.+..++.++|+||+|++++|+++|+.||....
T Consensus       176 E~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~  210 (267)
T PHA03390        176 EKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDE  210 (267)
T ss_pred             hhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCC
Confidence            99998889999999999999999999999998543

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.95  E-value=7.1e-28  Score=189.81  Aligned_cols=180  Identities=23%  Similarity=0.263  Sum_probs=138.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc--c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK--K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~--~   72 (202)
                      ||++++...+..++.+.......   .....+..|.......+|++++.      ......++++++.++++..++.  .
T Consensus        21 v~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~   97 (282)
T cd06643          21 VYKAQNKETGVLAAAKVIDTKSE---EELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELE   97 (282)
T ss_pred             EEEEEECCCCeEEEEEEeCCCCH---HHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCCCcHHHHHHhcC
Confidence            57777777777777665432211   12234555666667778887652      3455678899999999987764  3


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++++|||++........  ......+++.|+||
T Consensus        98 ~~l~~~~~~~~~~qi~~~L~~LH~---~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aP  172 (282)
T cd06643          98 RPLTEPQIRVVCKQTLEALNYLHE---NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ--RRDSFIGTPYWMAP  172 (282)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCcccEEEccCCCEEEcccccccccccccc--ccccccccccccCH
Confidence            569999999999999999999999   9999999999999999999999999999875432221  12234578899999


Q ss_pred             cccC-----CCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWM-----PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~-----~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.     ...++.++|+||+||++|||++|++||....+
T Consensus       173 E~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~  213 (282)
T cd06643         173 EVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNP  213 (282)
T ss_pred             hhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCH
Confidence            9984     34577899999999999999999999976543

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.95  E-value=6.7e-28  Score=188.75  Aligned_cols=155  Identities=19%  Similarity=0.250  Sum_probs=122.0

Q ss_pred             cCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC------CCCHHHHHHHHHHHHHHHHHHHhCC
Q 044746           31 RFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN------ILGFGQLREIEVSTSKGIAYLHEEC   98 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~~   98 (202)
                      .+..|.......+|++++.      ......++++++++++|..++...      ..++..++.++.|++.|+.|||+  
T Consensus        41 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~--  118 (269)
T cd05087          41 KFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHK--  118 (269)
T ss_pred             HHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHH--
Confidence            4566667777888898763      233456889999999998887532      35677888999999999999999  


Q ss_pred             CCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCC-------CCCchhhHHHHHH
Q 044746           99 RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPY-------SVTQKCDVFSFGM  171 (202)
Q Consensus        99 ~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~-------~~~~~~Diws~G~  171 (202)
                       .+++||||||+||+++.++.++|+|||++................++..|+|||++...       .++.++|+||||+
T Consensus       119 -~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~  197 (269)
T cd05087         119 -NNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGV  197 (269)
T ss_pred             -CCEeccccCcceEEEcCCCcEEECCccccccccCcceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHH
Confidence             99999999999999999999999999998754333222223334567889999998642       3578999999999


Q ss_pred             HHHHHHc-CCCCCcchhc
Q 044746          172 LLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       172 ~l~el~~-g~~p~~~~~~  188 (202)
                      +++|+++ |+.||....+
T Consensus       198 ~l~el~~~g~~p~~~~~~  215 (269)
T cd05087         198 TIWELFELGSQPYRHLSD  215 (269)
T ss_pred             HHHHHHhCCCCCCCCCCh
Confidence            9999996 9999975443

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.95  E-value=8.1e-28  Score=198.57  Aligned_cols=111  Identities=25%  Similarity=0.334  Sum_probs=94.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.++..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++...............+++.|+|||
T Consensus       233 ~l~~~~~~~~~~qi~~aL~~LH~---~~ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE  309 (400)
T cd05105         233 GLTTLDLLSFTYQVARGMEFLAS---KNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPE  309 (400)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChh
Confidence            37788889999999999999999   999999999999999999999999999998654332222223344578899999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      .+.+..++.++||||||++++||++ |..||....
T Consensus       310 ~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~  344 (400)
T cd05105         310 SIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMI  344 (400)
T ss_pred             hhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccc
Confidence            9988889999999999999999997 999987643

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.95  E-value=4.1e-28  Score=214.41  Aligned_cols=183  Identities=18%  Similarity=0.251  Sum_probs=140.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc--------ccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE--------DTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++++...+..++.|+....... ......|..|..++...+|++++...        ...+++++++.+++|..++..
T Consensus        29 VYLAkdk~tg~~vAlKvIk~~~l~-e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~lyIVMEY~~gGSL~~lL~k  107 (1021)
T PTZ00266         29 VFLVKHKRTQEFFCWKAISYRGLK-EREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQK  107 (1021)
T ss_pred             EEEEEECCCCeEEEEEEEeccccC-HHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEEEEEeCCCCCcHHHHHHH
Confidence            688999888888888765432111 11234466677788888999876422        235688999999999887753


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHhCC----CCCeEEecCCCCcEEEcC-----------------CCceEEeeee
Q 044746           73 -----NILGFGQLREIEVSTSKGIAYLHEEC----RQKIVHYDIKPESVLLDE-----------------NFFPKAADFG  126 (202)
Q Consensus        73 -----~~~~~~~~~~~~~~i~~~l~~lH~~~----~~~iiHrdlk~~nil~~~-----------------~~~~kl~dfg  126 (202)
                           ..+++..+..++.||+.||.|||+..    ..+||||||||+|||++.                 ...+||+|||
T Consensus       108 ~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFG  187 (1021)
T PTZ00266        108 CYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFG  187 (1021)
T ss_pred             HhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCC
Confidence                 46999999999999999999999721    134999999999999954                 2358999999


Q ss_pred             cceeccccCcccccCCCCCCCcccCCcccCC--CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          127 LAKLYNREHTHITSTGRRRTPGCEAPELWMP--YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       127 l~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~--~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ++........   .....||+.|+|||++.+  ..++.++|||||||++|||++|+.||....
T Consensus       188 lAr~l~~~s~---~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~  247 (1021)
T PTZ00266        188 LSKNIGIESM---AHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKAN  247 (1021)
T ss_pred             cccccccccc---ccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCC
Confidence            9986543221   223467999999999864  458899999999999999999999997543

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.95  E-value=8.3e-28  Score=188.95  Aligned_cols=180  Identities=22%  Similarity=0.204  Sum_probs=143.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++.+...+..|+.|+.+.....  .....+..|.......+|++++.      ......++++++.+++|..++..+.
T Consensus        20 vy~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~   97 (277)
T cd06642          20 VYKGIDNRTKEVVAIKIIDLEEAE--DEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLGGGSALDLLKPGP   97 (277)
T ss_pred             EEEEEEcCCCeEEEEEEeccccch--HHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccCCCcHHHHhhcCC
Confidence            678877777777777764322111  12234666666777778887653      3345678999999999999998888


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++..+..++.|++.|+.|||+   ++++|+||+|+||+++.++.++++|||++........  ......++..|+|||.
T Consensus        98 ~~~~~~~~~~~~i~~~l~~lH~---~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~  172 (277)
T cd06642          98 LEETYIATILREILKGLDYLHS---ERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI--KRNTFVGTPFWMAPEV  172 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhc---CCeeccCCChheEEEeCCCCEEEccccccccccCcch--hhhcccCcccccCHHH
Confidence            9999999999999999999999   9999999999999999999999999999876543221  1122356888999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +.+..++.++|+||||++++|+++|+.||....
T Consensus       173 ~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~  205 (277)
T cd06642         173 IKQSAYDFKADIWSLGITAIELAKGEPPNSDLH  205 (277)
T ss_pred             hCcCCCchhhhHHHHHHHHHHHHhCCCCCcccc
Confidence            998889999999999999999999999987543

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.95  E-value=1.8e-27  Score=187.48  Aligned_cols=178  Identities=19%  Similarity=0.246  Sum_probs=134.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc--c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK--K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~--~   72 (202)
                      ||++++...+..++.|..+... ........+..|.......+|++++.      .....+++++++++ ++..+..  .
T Consensus        16 vy~~~~~~~g~~~~~k~~~~~~-~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~   93 (284)
T cd07839          16 VFKAKNRETHEIVALKRVRLDD-DDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYCDQ-DLKKYFDSCN   93 (284)
T ss_pred             EEEEEECCCCcEEEEEEeeccc-ccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecCCC-CHHHHHHhcC
Confidence            5788887777777766543321 12223344566766777778887652      44556678888874 5655553  4


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||+++.......  ......+++.|+||
T Consensus        94 ~~~~~~~~~~~~~qi~~al~~LH~---~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aP  168 (284)
T cd07839          94 GDIDPEIVKSFMFQLLKGLAFCHS---HNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVR--CYSAEVVTLWYRPP  168 (284)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEEcCCCcEEECccchhhccCCCCC--CcCCCccccCCcCh
Confidence            569999999999999999999999   9999999999999999999999999999875433221  11234568899999


Q ss_pred             cccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          153 ELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       153 e~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      |++.+. .++.++|+||+||++++|++|..|+..
T Consensus       169 E~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~  202 (284)
T cd07839         169 DVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP  202 (284)
T ss_pred             HHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcC
Confidence            998764 478999999999999999999888643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.95  E-value=8.7e-28  Score=186.61  Aligned_cols=181  Identities=18%  Similarity=0.253  Sum_probs=138.4

Q ss_pred             CCccccCC-Ccc--eeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRG-STR--FITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~-~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++.+.. ++.  .++.|..+.....  ....++..|.......+|++++.     ......++++++++++|...+..
T Consensus        11 v~~~~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~~L~~~l~~   88 (257)
T cd05040          11 VRRGEWSTSGGKVIPVAVKCLKSDKLS--DIMDDFLKEAAIMHSLDHENLIRLYGVVLTHPLMMVTELAPLGSLLDRLRK   88 (257)
T ss_pred             EEeeeEecCCCCceEEEEeecCCcccH--HHHHHHHHHHHHHhhcCCCCccceeEEEcCCeEEEEEEecCCCcHHHHHHh
Confidence            57776644 222  3555543332221  33445677777778888887763     22455688889999999988855


Q ss_pred             C---CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc-cccCCCCCCCc
Q 044746           73 N---ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-ITSTGRRRTPG  148 (202)
Q Consensus        73 ~---~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~gt~~  148 (202)
                      .   .+++..+..++.|++.||.|||+   ++++|+||+|+||+++.++.++|+|||+++........ .......++..
T Consensus        89 ~~~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~  165 (257)
T cd05040          89 DALGHFLISTLCDYAVQIANGMRYLES---KRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFA  165 (257)
T ss_pred             cccccCcHHHHHHHHHHHHHHHHHHHh---CCccccccCcccEEEecCCEEEeccccccccccccccceecccCCCCCce
Confidence            3   48999999999999999999999   99999999999999999999999999999865432211 11123445788


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcch
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKE  186 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~  186 (202)
                      |+|||.+....++.++|+||+|++++||++ |+.||...
T Consensus       166 y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  204 (257)
T cd05040         166 WCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGL  204 (257)
T ss_pred             ecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence            999999988889999999999999999998 99999644

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.95  E-value=8.8e-28  Score=189.01  Aligned_cols=157  Identities=23%  Similarity=0.340  Sum_probs=127.6

Q ss_pred             ccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCe
Q 044746           30 IRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKK--NILGFGQLREIEVSTSKGIAYLHEECRQKI  102 (202)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i  102 (202)
                      ..+..|.......+|++++.     ..+...++++++++++|.+++..  ..+++..+..++.|++.||.|||+   +++
T Consensus        54 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~i  130 (279)
T cd05057          54 KEILDEAYVMASVDHPHVVRLLGICLSSQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEE---KRL  130 (279)
T ss_pred             HHHHHHHHHHHhCCCCCcceEEEEEecCceEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh---CCE
Confidence            34566666777778887653     23556788999999999988865  358999999999999999999999   999


Q ss_pred             EEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCC
Q 044746          103 VHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRR  181 (202)
Q Consensus       103 iHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~  181 (202)
                      +||||||+||+++.++.++|+|||+++...............++..|+|||.+....++.++|+||||++++|+++ |+.
T Consensus       131 ~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~  210 (279)
T cd05057         131 VHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAK  210 (279)
T ss_pred             EecccCcceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999986543322222222233568999999988889999999999999999998 999


Q ss_pred             CCcchhcc
Q 044746          182 NLEKEISE  189 (202)
Q Consensus       182 p~~~~~~~  189 (202)
                      ||.....+
T Consensus       211 p~~~~~~~  218 (279)
T cd05057         211 PYEGIPAV  218 (279)
T ss_pred             CCCCCCHH
Confidence            99875543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.95  E-value=6.6e-28  Score=188.51  Aligned_cols=184  Identities=20%  Similarity=0.167  Sum_probs=139.0

Q ss_pred             CCccccCCCcceeehhhhchhhhh--ccCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAM--EMDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++.+...+..++.|..+.....  .......+..|.......+|++++..        .....++++++++++|...+
T Consensus        18 vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l~~e~~~~~~L~~~l   97 (266)
T cd06651          18 VYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQL   97 (266)
T ss_pred             EEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEEEEEeCCCCCcHHHHH
Confidence            577877776667776654322111  11122345666667777788887632        23345678888999998877


Q ss_pred             cc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc-ccccCCCCCCCc
Q 044746           71 KK-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT-HITSTGRRRTPG  148 (202)
Q Consensus        71 ~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~gt~~  148 (202)
                      .. ..+++.....++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++........ ........++..
T Consensus        98 ~~~~~l~~~~~~~~~~qi~~~l~~LH~---~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~  174 (266)
T cd06651          98 KAYGALTESVTRKYTRQILEGMSYLHS---NMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPY  174 (266)
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEccCCCccccccccccCCccccCCcccc
Confidence            54 468999999999999999999999   9999999999999999999999999999875432111 111122446889


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |+|||.+.+..++.++|+||+||+++|+++|+.||....
T Consensus       175 y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~  213 (266)
T cd06651         175 WMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYE  213 (266)
T ss_pred             ccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccc
Confidence            999999988889999999999999999999999997543

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.95  E-value=1e-27  Score=188.84  Aligned_cols=155  Identities=17%  Similarity=0.300  Sum_probs=124.4

Q ss_pred             cCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC----------------CCCHHHHHHHHHHHH
Q 044746           31 RFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN----------------ILGFGQLREIEVSTS   88 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~~~~~~~~~i~   88 (202)
                      .+..|.......+|++++.      .++...++++++.+++|..++...                .+++..+..++.|++
T Consensus        53 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~  132 (280)
T cd05092          53 DFQREAELLTVLQHQHIVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIA  132 (280)
T ss_pred             HHHHHHHHHhcCCCCCCceEEEEEecCCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHH
Confidence            4566666667778887653      334566888999999998877542                478999999999999


Q ss_pred             HHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHH
Q 044746           89 KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFS  168 (202)
Q Consensus        89 ~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws  168 (202)
                      .|+.|||+   .+++||||||+||+++.++.++|+|||++................+++.|+|||.+.+..++.++|+||
T Consensus       133 ~al~~LH~---~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  209 (280)
T cd05092         133 SGMVYLAS---LHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWS  209 (280)
T ss_pred             HHHHHHHH---CCeecccccHhhEEEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHH
Confidence            99999999   999999999999999999999999999987553322211222233467899999999888999999999


Q ss_pred             HHHHHHHHHc-CCCCCcchhc
Q 044746          169 FGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       169 ~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |||+++||++ |++||.....
T Consensus       210 lG~il~el~~~g~~p~~~~~~  230 (280)
T cd05092         210 FGVVLWEIFTYGKQPWYQLSN  230 (280)
T ss_pred             HHHHHHHHHcCCCCCCccCCH
Confidence            9999999998 9999965443

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.95  E-value=1.2e-27  Score=188.44  Aligned_cols=182  Identities=19%  Similarity=0.200  Sum_probs=140.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.++.|....... .......+..|..+....+|++++.      .+....+++++++++.+..+... .
T Consensus        17 v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~   95 (286)
T cd07847          17 VFKCRNRETGQIVAIKKFVESED-DPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTVLNELEKNPR   95 (286)
T ss_pred             EEEEEECCCCcEEEEEEEeeccc-CccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEeccCccHHHHHHhCCC
Confidence            57888887777777765432211 1112233556666777778887653      33445688899999888877644 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++........  ......++..|+|||
T Consensus        96 ~~~~~~~~~~~~ql~~~l~~LH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~aPE  170 (286)
T cd07847          96 GVPEHLIKKIIWQTLQAVNFCHK---HNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGD--DYTDYVATRWYRAPE  170 (286)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCChhhEEEcCCCcEEECccccceecCCCcc--cccCcccccccCCHH
Confidence            69999999999999999999999   9999999999999999999999999999986543321  112334678899999


Q ss_pred             ccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .+.+ ..++.++|+||+|+++++|++|++||.+..+
T Consensus       171 ~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~  206 (286)
T cd07847         171 LLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSD  206 (286)
T ss_pred             HHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCCh
Confidence            9876 4578899999999999999999999976554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.95  E-value=5.8e-28  Score=189.56  Aligned_cols=154  Identities=19%  Similarity=0.284  Sum_probs=124.6

Q ss_pred             cCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-----------CCCCHHHHHHHHHHHHHHHHH
Q 044746           31 RFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-----------NILGFGQLREIEVSTSKGIAY   93 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~~~i~~~l~~   93 (202)
                      .+..+.......+|++++.      .+....++++++++++|..++..           ..+++..+..++.|++.||.|
T Consensus        55 ~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  134 (277)
T cd05032          55 EFLNEASVMKEFNCHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAY  134 (277)
T ss_pred             HHHHHHHHHHhCCCCceeEEEEEEcCCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4555666666778887653      34557788999999999888743           237888999999999999999


Q ss_pred             HHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHH
Q 044746           94 LHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLL  173 (202)
Q Consensus        94 lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l  173 (202)
                      ||+   .+++||||||+||+++.++.++|+|||+++...............++..|+|||.+....++.++|+||||+++
T Consensus       135 lH~---~~i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il  211 (277)
T cd05032         135 LAA---KKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVL  211 (277)
T ss_pred             HHh---CCccccccChheEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHH
Confidence            999   99999999999999999999999999998765433222222333457889999999888899999999999999


Q ss_pred             HHHHc-CCCCCcchh
Q 044746          174 FEVVG-RRRNLEKEI  187 (202)
Q Consensus       174 ~el~~-g~~p~~~~~  187 (202)
                      +|+++ |++||....
T Consensus       212 ~el~t~g~~p~~~~~  226 (277)
T cd05032         212 WEMATLAEQPYQGLS  226 (277)
T ss_pred             HHhhccCCCCCccCC
Confidence            99998 999997544

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.95  E-value=7.5e-28  Score=190.47  Aligned_cols=156  Identities=24%  Similarity=0.334  Sum_probs=126.1

Q ss_pred             ccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-------------------------CCCCHH
Q 044746           30 IRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-------------------------NILGFG   78 (202)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-------------------------~~~~~~   78 (202)
                      ..+..|.......+|++++.      ..+...++++++.+++|..++..                         ..+++.
T Consensus        48 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  127 (290)
T cd05045          48 RDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMG  127 (290)
T ss_pred             HHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHH
Confidence            34666766777788898763      44556788999999999887632                         247889


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCC
Q 044746           79 QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPY  158 (202)
Q Consensus        79 ~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~  158 (202)
                      .+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++...............++..|+|||.+.+.
T Consensus       128 ~~~~i~~~i~~~l~~LH~---~~ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~  204 (290)
T cd05045         128 DLISFAWQISRGMQYLAE---MKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDH  204 (290)
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeehhhhhhheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccC
Confidence            999999999999999999   99999999999999999999999999999754332222222233456789999999888


Q ss_pred             CCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          159 SVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       159 ~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      .++.++|+||||++++||++ |+.||.+..+
T Consensus       205 ~~~~~~Di~slG~~l~el~t~g~~p~~~~~~  235 (290)
T cd05045         205 IYTTQSDVWSFGVLLWEIVTLGGNPYPGIAP  235 (290)
T ss_pred             CcchHhHHHHHHHHHHHHHhcCCCCCCCCCH
Confidence            89999999999999999998 9999976544

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.95  E-value=3.6e-28  Score=195.48  Aligned_cols=176  Identities=24%  Similarity=0.374  Sum_probs=138.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHH--hccccccc---c---c----cccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIA--ADNFSNLV---G---S----EDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i---~---~----~~~~~~~~~~~~~~~l~~   68 (202)
                      ||||...+  +.||+|+-...+..+      |+.|..+-.  ...|+||+   +   .    ....+++++|.+.|+|.+
T Consensus       226 V~KaqL~~--~~VAVKifp~~~kqs------~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh~kGsL~d  297 (534)
T KOG3653|consen  226 VWKAQLDN--RLVAVKIFPEQEKQS------FQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTEFHPKGSLCD  297 (534)
T ss_pred             eehhhccC--ceeEEEecCHHHHHH------HHhHHHHHhccCccchhHHHhhchhccCCccccceeEEeeeccCCcHHH
Confidence            67777665  889999876655443      333322222  22444544   2   1    224569999999999999


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCC------CCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCC
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEEC------RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTG  142 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~------~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~  142 (202)
                      +++.+.++|.+..+++..+++||+|||+..      +.+|+|||||..|||+.+++.+.|+|||+|..+..........+
T Consensus       298 yL~~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~  377 (534)
T KOG3653|consen  298 YLKANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHG  377 (534)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecCCCCCcchhh
Confidence            999999999999999999999999999854      46899999999999999999999999999998776655555566


Q ss_pred             CCCCCcccCCcccCCC-CCC-----chhhHHHHHHHHHHHHcCCCCCc
Q 044746          143 RRRTPGCEAPELWMPY-SVT-----QKCDVFSFGMLLFEVVGRRRNLE  184 (202)
Q Consensus       143 ~~gt~~y~aPe~~~~~-~~~-----~~~Diws~G~~l~el~~g~~p~~  184 (202)
                      .+||.+|||||++.+. .+.     .+.||||+|.++||++++-.-++
T Consensus       378 qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~  425 (534)
T KOG3653|consen  378 QVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDAD  425 (534)
T ss_pred             hhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            8999999999999763 222     45899999999999998765554

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.95  E-value=1.7e-27  Score=184.82  Aligned_cols=181  Identities=21%  Similarity=0.303  Sum_probs=137.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc---c----cccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG---S----EDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~----~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.++.|...... ........+..+.......+|++++.   .    .....++++++++++|..++.. 
T Consensus        16 v~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~   94 (257)
T cd08223          16 VSLVRHRTDGKQYVIKKLNLRN-ASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLKEQ   94 (257)
T ss_pred             EEEEEEcCCCcEEEEEEEehhh-cCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEecccCCCcHHHHHHHh
Confidence            5677777666666655432211 11112233555556666677887653   1    2234578889999999887743 


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           73 --NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        73 --~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                        ..+++.++..++.+++.|+.+||+   .+++|+||||+||+++.++.++|+|||++........  ......+++.|+
T Consensus        95 ~~~~l~~~~~~~~~~~l~~~l~~lH~---~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~--~~~~~~~~~~y~  169 (257)
T cd08223          95 KGKLLPENQVVEWFVQIAMALQYLHE---KHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCD--MASTLIGTPYYM  169 (257)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCchhEEEecCCcEEEecccceEEecccCC--ccccccCCcCcc
Confidence              358999999999999999999999   9999999999999999999999999999986533221  123345688999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |||++.+..++.++|+||+|++++++++|+.||....
T Consensus       170 aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~  206 (257)
T cd08223         170 SPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKD  206 (257)
T ss_pred             ChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC
Confidence            9999998888999999999999999999999997544

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.95  E-value=1.2e-27  Score=190.67  Aligned_cols=155  Identities=25%  Similarity=0.338  Sum_probs=122.9

Q ss_pred             cCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhcc-----------------CCCCHHHHHHHHHH
Q 044746           31 RFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-----------------NILGFGQLREIEVS   86 (202)
Q Consensus        31 ~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-----------------~~~~~~~~~~~~~~   86 (202)
                      .+..|....... +|++++.      ......++++++.+++|..++..                 ..+++..+..++.|
T Consensus        66 ~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q  145 (304)
T cd05101          66 DLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQ  145 (304)
T ss_pred             HHHHHHHHHHhhccCCCchheeEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHH
Confidence            445554444444 6777653      34456789999999999888743                 24788899999999


Q ss_pred             HHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhH
Q 044746           87 TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDV  166 (202)
Q Consensus        87 i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Di  166 (202)
                      ++.||.|||+   ++++||||||+||+++.++.++|+|||+++...............+++.|+|||.+.+..++.++|+
T Consensus       146 i~~al~~LH~---~givH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  222 (304)
T cd05101         146 VARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDV  222 (304)
T ss_pred             HHHHHHHHHH---CCeeecccccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhH
Confidence            9999999999   9999999999999999999999999999986644332222233345678999999988889999999


Q ss_pred             HHHHHHHHHHHc-CCCCCcchhc
Q 044746          167 FSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       167 ws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ||||++++++++ |..||.....
T Consensus       223 ~slG~~l~el~~~g~~p~~~~~~  245 (304)
T cd05101         223 WSFGVLMWEIFTLGGSPYPGIPV  245 (304)
T ss_pred             HHHHHHHHHHHcCCCCCcccCCH
Confidence            999999999998 8888865443

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.95  E-value=8.1e-28  Score=189.19  Aligned_cols=182  Identities=17%  Similarity=0.203  Sum_probs=135.1

Q ss_pred             CCccccCC----CcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-------ccccceEEEEEccCCchhhh
Q 044746            1 MEKPRNRG----STRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-------SEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-------~~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++.+..    ....|+.|..+..  ........+..|.......+|++++.       .+....++.++..+++|..+
T Consensus        22 V~~~~~~~~~~~~~~~v~~k~~~~~--~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~~~~~~~L~~~   99 (280)
T cd05043          22 IFYGILIDEKPGKEEEVFVKTVKDH--ASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLF   99 (280)
T ss_pred             EEEEEEecCCCCceeEEEEEEccCC--CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCCEEEEEcCCCCcHHHH
Confidence            45555543    2455555543321  11122334555666666778888653       23445677888888999888


Q ss_pred             hcc---------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccccc
Q 044746           70 CKK---------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITS  140 (202)
Q Consensus        70 ~~~---------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~  140 (202)
                      +..         ..+++..+..++.|++.||+|||+   ++++|+||||+||+++.++.++++|||+++.+.........
T Consensus       100 l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~---~~i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~  176 (280)
T cd05043         100 LQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHK---RGVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLG  176 (280)
T ss_pred             HHhccccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccCHhhEEEcCCCcEEECCCCCcccccCCceEEeC
Confidence            744         458999999999999999999999   99999999999999999999999999999865333222222


Q ss_pred             CCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          141 TGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       141 ~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      ....++..|+|||++.+..++.++||||+|++++|+++ |+.||....
T Consensus       177 ~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~  224 (280)
T cd05043         177 DNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEID  224 (280)
T ss_pred             CCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCC
Confidence            23345678999999988889999999999999999999 999997644

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.95  E-value=1.8e-27  Score=185.05  Aligned_cols=179  Identities=21%  Similarity=0.321  Sum_probs=133.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++.....+ +.|+......    ....+..|.......+|++++.      ..+...++++++++++|.+++..  
T Consensus        20 v~~~~~~~~~~~-~iK~~~~~~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   94 (256)
T cd05059          20 VHLGKWRGKIDV-AIKMIREGAM----SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERK   94 (256)
T ss_pred             EEEeEecCCccE-EEEEeccCCC----CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCCCCHHHHHHhcc
Confidence            566666544444 4443221111    1123445655666677887662      33456688889999999988754  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++++|||+++........ ......++..|+||
T Consensus        95 ~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~~y~~P  170 (256)
T cd05059          95 GKLGTEWLLDMCSDVCEAMEYLES---NGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYT-SSQGTKFPVKWAPP  170 (256)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH---CCcccccccHhhEEECCCCcEEECCcccceeccccccc-ccCCCCCCccccCH
Confidence            358999999999999999999999   99999999999999999999999999998765432211 11122234579999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |.+.+..++.++|+||||+++||+++ |+.||....+
T Consensus       171 e~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~  207 (256)
T cd05059         171 EVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSN  207 (256)
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCH
Confidence            99998889999999999999999999 8999976543

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.6e-27  Score=185.45  Aligned_cols=179  Identities=22%  Similarity=0.234  Sum_probs=140.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..++..++.|+.......   ....+..|.......+|++++.      .+...++++++..+++|..+...  
T Consensus        19 v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~~~~~l~~~~~~~~   95 (262)
T cd06613          19 VYKARDIATGELVAIKVIKLEPGD---DFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYCGGGSLQDIYQVTR   95 (262)
T ss_pred             EEEeEecCCCCEEEEEEEEcCchh---hHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCCCCCcHHHHHHhhc
Confidence            567777766677777665432211   2345666666777788888763      34445678889999999887754  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..++..++..++.|++.||.|||+   .+++|+||+|+||+++.++.++++|||++........  ......++..|+||
T Consensus        96 ~~l~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~y~~P  170 (262)
T cd06613          96 GPLSELQIAYVCRETLKGLAYLHE---TGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIA--KRKSFIGTPYWMAP  170 (262)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHh---CCceecCCChhhEEECCCCCEEECccccchhhhhhhh--ccccccCCccccCc
Confidence            479999999999999999999999   9999999999999999999999999999876443211  12234568889999


Q ss_pred             cccCCC---CCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWMPY---SVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~~~---~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |.+...   .++.++|+||+|++++||++|++||....
T Consensus       171 e~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~  208 (262)
T cd06613         171 EVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLH  208 (262)
T ss_pred             hhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence            998776   78899999999999999999999997654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.95  E-value=1.1e-27  Score=190.57  Aligned_cols=180  Identities=18%  Similarity=0.280  Sum_probs=136.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..+++.|+.|..+....  ......+..|.......+|++++.      ......++++++. ++|..++..  
T Consensus        22 vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~   98 (301)
T cd07873          22 VYKGRSKLTDNLVALKEIRLEHE--EGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-KDLKQYLDDCG   98 (301)
T ss_pred             EEEEEEcCCCcEEEEEEEecccc--cCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEeccc-cCHHHHHHhcC
Confidence            68888888888888776432211  112233455667777788888763      3344567888887 467666543  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++........  ......+++.|+||
T Consensus        99 ~~~~~~~~~~~~~qi~~aL~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~~P  173 (301)
T cd07873          99 NSINMHNVKLFLFQLLRGLNYCHR---RKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTK--TYSNEVVTLWYRPP  173 (301)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCC--cccccceeecccCc
Confidence            458999999999999999999999   9999999999999999999999999999875432221  11233458899999


Q ss_pred             cccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |.+.+. .++.++|+||+|++++||++|++||.....
T Consensus       174 E~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~  210 (301)
T cd07873         174 DILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTV  210 (301)
T ss_pred             HHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            988654 578899999999999999999999976543

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.95  E-value=3.8e-28  Score=186.08  Aligned_cols=171  Identities=19%  Similarity=0.243  Sum_probs=129.4

Q ss_pred             cCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc---c-------ccccceEEEEEccCCchhhhhccC--
Q 044746            6 NRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV---G-------SEDTETYIKGFLAMGPFYLLCKKN--   73 (202)
Q Consensus         6 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~-------~~~~~~~~~~~~~~~~l~~~~~~~--   73 (202)
                      ++.+++-.|.|+........       ..-+.......|++++   .       .-...-++++.++||.|+..+..+  
T Consensus        83 ~k~T~ekfALKvL~Ds~KAR-------rEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVmE~meGGeLfsriq~~g~  155 (400)
T KOG0604|consen   83 HKRTQEKFALKVLLDSPKAR-------REVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVMECMEGGELFSRIQDRGD  155 (400)
T ss_pred             eccchhhhHHHHHhcCHHHH-------hHhhhhhhhcCCCceEEeehhhhhhccCceeeEeeeecccchHHHHHHHHccc
Confidence            44455555555554433332       2223334455566554   2       223344889999999998877543  


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC---CCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~---~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                       .+++.++..|+.||+.|+.|||+   .+|.||||||+|+|...   +..+||+|||.|+.......   ....+-||.|
T Consensus       156 ~afTErea~eI~~qI~~Av~~lH~---~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~~---L~TPc~TPyY  229 (400)
T KOG0604|consen  156 QAFTEREASEIMKQIGLAVRYLHS---MNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPGD---LMTPCFTPYY  229 (400)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHh---cchhhccCChhheeeecCCCCcceEecccccccccCCCcc---ccCCcccccc
Confidence             49999999999999999999999   99999999999999964   56789999999986543222   3344559999


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      .|||++....|+..+|+||+|+++|-|+-|.+||.+....
T Consensus       230 vaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~  269 (400)
T KOG0604|consen  230 VAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL  269 (400)
T ss_pred             cCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCc
Confidence            9999999989999999999999999999999999876553

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.95  E-value=1.2e-27  Score=186.86  Aligned_cols=183  Identities=20%  Similarity=0.231  Sum_probs=139.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhc------cCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAME------MDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~   68 (202)
                      ||++.+...+..++.|.........      .+....+..|..+....+|++++.      ......+++++.++++|..
T Consensus        16 v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~   95 (267)
T cd06628          16 VYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHLNIFLEYVPGGSVAA   95 (267)
T ss_pred             EEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCccEEEEEecCCCCHHH
Confidence            5777776666666665432221111      111234556666777778887653      3445668889999999988


Q ss_pred             hhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc----ccCCC
Q 044746           69 LCKK-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI----TSTGR  143 (202)
Q Consensus        69 ~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~----~~~~~  143 (202)
                      ++.. ..+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||.++.........    .....
T Consensus        96 ~l~~~~~l~~~~~~~~~~~l~~~l~~lH~---~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~  172 (267)
T cd06628          96 LLNNYGAFEETLVRNFVRQILKGLNYLHN---RGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSL  172 (267)
T ss_pred             HHHhccCccHHHHHHHHHHHHHHHHHHHh---cCcccccCCHHHEEEcCCCCEEecccCCCcccccccccCCcccccccc
Confidence            8865 468999999999999999999999   999999999999999999999999999988654221111    11123


Q ss_pred             CCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      .|+..|+|||.+.+..++.++|+||+|++++++++|+.||...
T Consensus       173 ~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  215 (267)
T cd06628         173 QGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDC  215 (267)
T ss_pred             CCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCc
Confidence            4688999999998888899999999999999999999999754

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.95  E-value=1.1e-27  Score=186.14  Aligned_cols=185  Identities=19%  Similarity=0.274  Sum_probs=143.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++...++.++.|+..............+..|.......+|++++.      .+...+++++++.+++|..++.. +
T Consensus         9 vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   88 (265)
T cd05579           9 VFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDLASLLENVG   88 (265)
T ss_pred             EEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcHHHHHHHcC
Confidence            5788888777777777654433322233445666666666777887653      34556688899999999888765 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc------ccccCCCCCCC
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT------HITSTGRRRTP  147 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~------~~~~~~~~gt~  147 (202)
                      .+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++........      ........++.
T Consensus        89 ~~~~~~~~~i~~qi~~~L~~lH~---~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (265)
T cd05579          89 SLDEDVARIYIAEIVLALEYLHS---NGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTP  165 (265)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---cCeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccccccccCcccCc
Confidence            68999999999999999999999   9999999999999999999999999999875432211      01122345678


Q ss_pred             cccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          148 GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       148 ~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .|++||.......+.++|+||+|++++++++|+.||.....
T Consensus       166 ~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~  206 (265)
T cd05579         166 DYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETP  206 (265)
T ss_pred             cccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH
Confidence            89999999888888999999999999999999999976544

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.95  E-value=2.1e-27  Score=185.24  Aligned_cols=181  Identities=18%  Similarity=0.265  Sum_probs=141.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc---
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK---   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~---   71 (202)
                      ||++.+..+++.++.|..+...........++..|.......+|++++.      ......++++++++++|..++.   
T Consensus        18 v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   97 (267)
T cd08224          18 VYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVLELADAGDLSRMIKHFK   97 (267)
T ss_pred             EEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEecCCCCCHHHHHHHhc
Confidence            5777787677777776544333332233445666666677778887652      3345668899999999987763   


Q ss_pred             --cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           72 --KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        72 --~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                        ...+++.++..++.+++.||.|||+   .+++|+||+|+||+++.++.++++|||++........  ......+++.|
T Consensus        98 ~~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~y  172 (267)
T cd08224          98 KQKRLIPERTIWKYFVQLCSALEHMHS---KRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT--AAHSLVGTPYY  172 (267)
T ss_pred             ccCCCcCHHHHHHHHHHHHHHHHHHHh---CCEecCCcChhhEEECCCCcEEEeccceeeeccCCCc--ccceecCCccc
Confidence              2458999999999999999999999   9999999999999999999999999999876433221  11224568889


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      +|||.+.+..++.++|+||+|++++++++|+.||...
T Consensus       173 ~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  209 (267)
T cd08224         173 MSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD  209 (267)
T ss_pred             cCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccC
Confidence            9999998888999999999999999999999999654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.4e-27  Score=186.51  Aligned_cols=183  Identities=18%  Similarity=0.146  Sum_probs=139.9

Q ss_pred             CCccccCCCcceeehhhhchhhh--hccCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDA--MEMDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++++...+..++.|.......  ........+..|.......+|++++..        +....+++++.++++|..++
T Consensus        18 v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~   97 (264)
T cd06653          18 VYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLSIFVEYMPGGSIKDQL   97 (264)
T ss_pred             EEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEEEEEEeCCCCcHHHHH
Confidence            57788877777777775422111  111223356666667777788877631        23345688899999998877


Q ss_pred             cc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc-ccccCCCCCCCc
Q 044746           71 KK-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT-HITSTGRRRTPG  148 (202)
Q Consensus        71 ~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~gt~~  148 (202)
                      .. ..+++.....++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||+++....... ........++..
T Consensus        98 ~~~~~l~~~~~~~~~~~i~~al~~LH~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~  174 (264)
T cd06653          98 KAYGALTENVTRRYTRQILQGVSYLHS---NMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPY  174 (264)
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEECccccccccccccccCccccccCCccc
Confidence            54 568999999999999999999999   9999999999999999999999999999975432111 111123457889


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      |+|||++.+..++.++|+||+|++++++++|++||...
T Consensus       175 y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  212 (264)
T cd06653         175 WMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEY  212 (264)
T ss_pred             ccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCcc
Confidence            99999998888899999999999999999999999754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.95  E-value=1.2e-27  Score=187.30  Aligned_cols=155  Identities=15%  Similarity=0.201  Sum_probs=118.7

Q ss_pred             ccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-----CCCHHHHHHHHHHHHHHHHHHHhCC
Q 044746           30 IRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-----ILGFGQLREIEVSTSKGIAYLHEEC   98 (202)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~~   98 (202)
                      ..|..+.......+|++++.      ......++++++++++|..++...     ..+...+..++.|++.||.|||+  
T Consensus        40 ~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~--  117 (268)
T cd05086          40 NEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHK--  117 (268)
T ss_pred             HHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHH--
Confidence            34555555666778888763      234457899999999998887542     35667788999999999999999  


Q ss_pred             CCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCC-------CCCCchhhHHHHHH
Q 044746           99 RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMP-------YSVTQKCDVFSFGM  171 (202)
Q Consensus        99 ~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~-------~~~~~~~Diws~G~  171 (202)
                       .+++||||||+||+++.++.++|+|||++................++..|+|||++..       ..++.++|+||||+
T Consensus       118 -~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~  196 (268)
T cd05086         118 -HNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGV  196 (268)
T ss_pred             -CCeeccCCccceEEEcCCccEEecccccccccCcchhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHH
Confidence             9999999999999999999999999998864222111112233456889999998743       24578899999999


Q ss_pred             HHHHHHc-CCCCCcchh
Q 044746          172 LLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       172 ~l~el~~-g~~p~~~~~  187 (202)
                      +++||++ |.+||....
T Consensus       197 ~l~el~~~~~~p~~~~~  213 (268)
T cd05086         197 TLWELFENAAQPYSHLS  213 (268)
T ss_pred             HHHHHHhCCCCCCCCCC
Confidence            9999997 577886543

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.95  E-value=1.3e-27  Score=186.76  Aligned_cols=182  Identities=20%  Similarity=0.314  Sum_probs=137.3

Q ss_pred             CCccccCCC---cceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGS---TRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||+++....   ...|+.|+.+...  .......|..|.......+|++++.      ..+...++++++++++|..++.
T Consensus        20 vy~~~~~~~~~~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~   97 (266)
T cd05033          20 VCRGRLKLPGKKEIDVAIKTLKAGS--SDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLR   97 (266)
T ss_pred             EEEEEEccCCCCcceEEEEEcCCCC--ChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEEEEcCCCCCHHHHHH
Confidence            566665432   3455655543221  1112234555666677778887653      3455678899999999998875


Q ss_pred             c--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           72 K--NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        72 ~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                      .  ..+++..+..++.|++.||.|||+   ++++|+||||+||+++.++.++++|||++................++..|
T Consensus        98 ~~~~~~~~~~~~~~~~~l~~~l~~Lh~---~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y  174 (266)
T cd05033          98 ENDGKFTVGQLVGMLRGIASGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRW  174 (266)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCCEEECccchhhcccccccceeccCCCCCccc
Confidence            4  468999999999999999999999   99999999999999999999999999999876422222222223346789


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      +|||.+.+..++.++|+||||++++++++ |..||....
T Consensus       175 ~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~  213 (266)
T cd05033         175 TAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMS  213 (266)
T ss_pred             cChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCC
Confidence            99999998889999999999999999998 999986543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.95  E-value=1.2e-27  Score=188.15  Aligned_cols=181  Identities=22%  Similarity=0.205  Sum_probs=144.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++.+...+..++.|+.+....  ......+..|.......+|++++.      ......++++++.+++|..++..+.
T Consensus        20 vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~   97 (277)
T cd06640          20 VFKGIDNRTQQVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLRAGP   97 (277)
T ss_pred             EEEEEEccCCEEEEEEEEecccc--HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecCCCCcHHHHHhcCC
Confidence            57788877777777776442211  112234666666667778887652      3455678899999999999998888


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++.++..++.|++.||.|||+   .+++|+||+|+||+++.++.++++|||++........  ......++..|+|||+
T Consensus        98 l~~~~~~~~~~~l~~~l~~lh~---~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~apE~  172 (277)
T cd06640          98 FDEFQIATMLKEILKGLDYLHS---EKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI--KRNTFVGTPFWMAPEV  172 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHh---CCccCcCCChhhEEEcCCCCEEEcccccceeccCCcc--ccccccCcccccCHhH
Confidence            9999999999999999999999   9999999999999999999999999999976543221  1223356888999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +.+..++.++|+||||++++||++|++||....+
T Consensus       173 ~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~  206 (277)
T cd06640         173 IQQSAYDSKADIWSLGITAIELAKGEPPNSDMHP  206 (277)
T ss_pred             hccCCCccHHHHHHHHHHHHHHHHCCCCCCCcCh
Confidence            9888899999999999999999999999976543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.95  E-value=1.3e-27  Score=190.89  Aligned_cols=179  Identities=21%  Similarity=0.252  Sum_probs=140.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..++..+++|......  ..+...++..|.......+|++++.      ..+...++++++++++|..++.. .
T Consensus        17 v~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey~~~~~L~~~l~~~~   94 (308)
T cd06615          17 VTKVLHRPSGLIMARKLIHLEI--KPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAG   94 (308)
T ss_pred             EEEEEEcCCCeEEEEEEecccc--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeeccCCCcHHHHHHhcC
Confidence            5777777777777776643221  1112234556666777778888763      34566788999999999888754 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+.  .+++|+||||+||+++.++.++++|||++.......    .....|++.|+|||
T Consensus        95 ~~~~~~~~~~~~~i~~~l~~lH~~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~aPE  168 (308)
T cd06615          95 RIPENILGKISIAVLRGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSPE  168 (308)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhh--CCEEECCCChHHEEEecCCcEEEccCCCcccccccc----cccCCCCcCccChh
Confidence            689999999999999999999971  589999999999999999999999999987543221    23345788999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      .+.+..++.++|+||||++++++++|+.||....
T Consensus       169 ~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~  202 (308)
T cd06615         169 RLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPD  202 (308)
T ss_pred             HhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcc
Confidence            9988888999999999999999999999997543

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.95  E-value=2.3e-27  Score=184.30  Aligned_cols=154  Identities=21%  Similarity=0.363  Sum_probs=125.6

Q ss_pred             cCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCe
Q 044746           31 RFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--NILGFGQLREIEVSTSKGIAYLHEECRQKI  102 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i  102 (202)
                      .+..|.......+|++++.      ......+++++.++++|..+...  ..+++..+..++.|++.||.|||+   +++
T Consensus        45 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i  121 (256)
T cd05114          45 DFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLER---NSF  121 (256)
T ss_pred             HHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHH---CCc
Confidence            4566777777788888653      33445688999999999988753  458999999999999999999999   999


Q ss_pred             EEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCC
Q 044746          103 VHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRR  181 (202)
Q Consensus       103 iHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~  181 (202)
                      +||||||+||+++.++.++++|||.++........ ......++..|+|||.+.+..++.++|+||||++++|+++ |++
T Consensus       122 ~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~  200 (256)
T cd05114         122 IHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYT-SSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKM  200 (256)
T ss_pred             cccccCcceEEEcCCCeEEECCCCCccccCCCcee-ccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999998754332211 1122234568999999988889999999999999999999 999


Q ss_pred             CCcchhc
Q 044746          182 NLEKEIS  188 (202)
Q Consensus       182 p~~~~~~  188 (202)
                      ||.....
T Consensus       201 p~~~~~~  207 (256)
T cd05114         201 PFEKKSN  207 (256)
T ss_pred             CCCCCCH
Confidence            9976554

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.95  E-value=1.8e-27  Score=189.65  Aligned_cols=154  Identities=23%  Similarity=0.346  Sum_probs=124.5

Q ss_pred             cCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhccC---CCCHHHHHHHHHHHHHHHHHHHhCCCC
Q 044746           31 RFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN---ILGFGQLREIEVSTSKGIAYLHEECRQ  100 (202)
Q Consensus        31 ~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~~~  100 (202)
                      .+..|....... +|++++.      ..+...++++++.+++|..++...   .+++.++..++.|++.||.|||+   +
T Consensus        84 ~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---~  160 (302)
T cd05055          84 ALMSELKIMSHLGNHENIVNLLGACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLAS---K  160 (302)
T ss_pred             HHHHHHHHHHhccCCCCcceEEEEEecCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH---C
Confidence            455565666666 7888763      334456888999999999888543   28999999999999999999999   9


Q ss_pred             CeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-C
Q 044746          101 KIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-R  179 (202)
Q Consensus       101 ~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g  179 (202)
                      +++|+||||+||+++.++.++++|||+++...............++..|+|||.+.+..++.++|+||+|++++|+++ |
T Consensus       161 ~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g  240 (302)
T cd05055         161 NCIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLG  240 (302)
T ss_pred             CeehhhhccceEEEcCCCeEEECCCcccccccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999986543322111222345678999999988889999999999999999998 9


Q ss_pred             CCCCcchh
Q 044746          180 RRNLEKEI  187 (202)
Q Consensus       180 ~~p~~~~~  187 (202)
                      ..||....
T Consensus       241 ~~p~~~~~  248 (302)
T cd05055         241 SNPYPGMP  248 (302)
T ss_pred             CCCcCCCC
Confidence            99987544

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.95  E-value=2.3e-27  Score=183.93  Aligned_cols=178  Identities=20%  Similarity=0.249  Sum_probs=140.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc--c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK--K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~--~   72 (202)
                      ||+++...++..++.|..+....     ...+..|.......+|++++.      .....++++++..+++|..++.  .
T Consensus        19 v~~~~~~~~~~~~~~k~~~~~~~-----~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~l~~~~   93 (256)
T cd06612          19 VYKAIHKETGQVVAIKVVPVEED-----LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMKITN   93 (256)
T ss_pred             EEEEEEcCCCcEEEEEEeecHHH-----HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecCCCCcHHHHHHhCc
Confidence            46777776666666655433221     345666666667778887653      3345668899999999988875  4


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.|+.|||+   .+++|+|++|+||+++.++.++|+|||++........  ......++..|+||
T Consensus        94 ~~l~~~~~~~~~~~l~~~l~~lh~---~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~P  168 (256)
T cd06612          94 KTLTEEEIAAILYQTLKGLEYLHS---NKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMA--KRNTVIGTPFWMAP  168 (256)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEECCCCcEEEcccccchhcccCcc--ccccccCCccccCH
Confidence            568999999999999999999999   9999999999999999999999999999886543321  11223468899999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |.+.+..++.++|+||+|+++++|++|++||....+
T Consensus       169 E~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~  204 (256)
T cd06612         169 EVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHP  204 (256)
T ss_pred             HHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcch
Confidence            999888899999999999999999999999976543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.95  E-value=3.2e-27  Score=183.99  Aligned_cols=179  Identities=26%  Similarity=0.382  Sum_probs=135.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhccC--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKKN--   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~~--   73 (202)
                      ||++.+.++.+++.+.+. ...    .....+..|.......+|++++.     ......++++++.+++|..+....  
T Consensus        22 v~~~~~~~~~~~~lK~~~-~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~   96 (260)
T cd05069          22 VWMGTWNGTTKVAIKTLK-PGT----MMPEAFLQEAQIMKKLRHDKLVPLYAVVSEEPIYIVTEFMGKGSLLDFLKEGDG   96 (260)
T ss_pred             EEEEEEcCCceEEEEEcc-cCC----ccHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCcEEEEEcCCCCCHHHHHhhCCC
Confidence            567776665554433332 111    11234556666777778887652     233456888899999998888543  


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                       .+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++......... ......++..|+||
T Consensus        97 ~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~~P  172 (260)
T cd05069          97 KYLKLPQLVDMAAQIADGMAYIER---MNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYT-ARQGAKFPIKWTAP  172 (260)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccCcceEEEcCCCeEEECCCccceEccCCccc-ccCCCccchhhCCH
Confidence             38899999999999999999999   99999999999999999999999999999765432211 11223346789999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |...+..++.++|+||+|++++|+++ |+.||....+
T Consensus       173 e~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~  209 (260)
T cd05069         173 EAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVN  209 (260)
T ss_pred             HHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            99988889999999999999999999 9999976544

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.95  E-value=3.1e-27  Score=182.06  Aligned_cols=170  Identities=18%  Similarity=0.186  Sum_probs=132.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.++.|..+...        .+..+........|++++.      ......++++++++++|.+++.. .
T Consensus         9 v~~~~~~~~~~~~~~K~i~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   80 (237)
T cd05576           9 VLLVMDTRTQQTFILKGLRKSS--------EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKFL   80 (237)
T ss_pred             EEEEEEccCCcEEEEEeecchh--------hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHHhc
Confidence            6888898887777766543321        1222333333445566552      34456788999999999887643 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++++|||.+.......     ....++..|+|||
T Consensus        81 ~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~-----~~~~~~~~y~aPE  152 (237)
T cd05576          81 NIPEECVKRWAAEMVVALDALHR---EGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSC-----DGEAVENMYCAPE  152 (237)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEEcCCCCEEEecccchhcccccc-----ccCCcCccccCCc
Confidence            69999999999999999999999   999999999999999999999999999876543221     2233467899999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      .+....++.++|+||+|++++|+++|+.|+...
T Consensus       153 ~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~  185 (237)
T cd05576         153 VGGISEETEACDWWSLGAILFELLTGKTLVECH  185 (237)
T ss_pred             ccCCCCCCchhhHHHHHHHHHHHHHCcchhhcC
Confidence            998888899999999999999999999887643

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.95  E-value=2.8e-27  Score=186.49  Aligned_cols=181  Identities=21%  Similarity=0.229  Sum_probs=138.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc------cccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV------GSEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++.+...++.++.|......... .....+..|.......+|++++      .......++++++.++.+..+... .
T Consensus        17 vy~~~~~~~~~~~~iK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~   95 (286)
T cd07846          17 VMKCKHKETGQIVAIKKFLESEDDK-MVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEFVDHTVLDDLEKYPN   95 (286)
T ss_pred             EEEEEECCCCCEEEEEeHhhccCcc-hhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEecCCccHHHHHHhccC
Confidence            5788887777777776543322221 2233455566666777888765      234456788899999888877644 3


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.++..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++........  ......++..|+|||
T Consensus        96 ~~~~~~~~~~~~~i~~~l~~LH~---~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE  170 (286)
T cd07846          96 GLDESRVRKYLFQILRGIEFCHS---HNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE--VYTDYVATRWYRAPE  170 (286)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCcEEEEeeeeeeeccCCcc--ccCcccceeeccCcH
Confidence            58999999999999999999999   9999999999999999999999999999886543221  122345688999999


Q ss_pred             ccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ++.+. .++.++|+||||++++||++|++||....
T Consensus       171 ~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~  205 (286)
T cd07846         171 LLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDS  205 (286)
T ss_pred             HhccccccCchHhHHHHHHHHHHHHcCCCCCCCCc
Confidence            98753 46789999999999999999999997544

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.95  E-value=2.5e-27  Score=187.69  Aligned_cols=179  Identities=21%  Similarity=0.221  Sum_probs=137.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc--c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK--K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~--~   72 (202)
                      ||++++...+..++.|+.....   .+....+..+.......+|++++.      ..+..++++++++++++..+..  .
T Consensus        28 vy~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~  104 (292)
T cd06644          28 VYKAKNKETGALAAAKVIETKS---EEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFCPGGAVDAIMLELD  104 (292)
T ss_pred             EEEEEECCCCceEEEEEeccCC---HHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecCCCCcHHHHHHhhc
Confidence            5788887777777777654321   112334555666677778887653      3445678899999999877653  3


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.|+.|||+   .+++||||||+||+++.++.++|+|||++.........  .....+++.|+||
T Consensus       105 ~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aP  179 (292)
T cd06644         105 RGLTEPQIQVICRQMLEALQYLHS---MKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQR--RDSFIGTPYWMAP  179 (292)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhc---CCeeecCCCcceEEEcCCCCEEEccCccceeccccccc--cceecCCccccCc
Confidence            468999999999999999999999   99999999999999999999999999988754322111  1233468899999


Q ss_pred             cccC-----CCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWM-----PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~-----~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |++.     ...++.++|+||+||++|||++|++||....
T Consensus       180 E~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~  219 (292)
T cd06644         180 EVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELN  219 (292)
T ss_pred             eeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCcccc
Confidence            9985     3457889999999999999999999997644

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.95  E-value=1.1e-27  Score=185.04  Aligned_cols=183  Identities=15%  Similarity=0.221  Sum_probs=138.9

Q ss_pred             cCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-CCCHH
Q 044746            6 NRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-ILGFG   78 (202)
Q Consensus         6 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~   78 (202)
                      ...++...|+|+-.+.+...  ..+-|..-+.......|+||+.      ..+..+++++.+.+|+|...+.++ .+++.
T Consensus        99 ~i~t~~EYAVKiidKq~gHs--R~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~GGplLshI~~~~~F~E~  176 (463)
T KOG0607|consen   99 SIQTGKEYAVKIIDKQPGHS--RSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRGGPLLSHIQKRKHFNER  176 (463)
T ss_pred             eeccchhhhhhhhhcCCchH--HHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccCchHHHHHHHhhhccHH
Confidence            34455555666544443332  2334666666667778888763      445567889999999988877655 59999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC---ceEEeeeecceecccc-----CcccccCCCCCCCccc
Q 044746           79 QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF---FPKAADFGLAKLYNRE-----HTHITSTGRRRTPGCE  150 (202)
Q Consensus        79 ~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~---~~kl~dfgl~~~~~~~-----~~~~~~~~~~gt~~y~  150 (202)
                      ++..+.++|+.||.|||.   +||.||||||+|||-....   -+||+||.+...+...     .........+|+..||
T Consensus       177 EAs~vvkdia~aLdFlH~---kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfM  253 (463)
T KOG0607|consen  177 EASRVVKDIASALDFLHT---KGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFM  253 (463)
T ss_pred             HHHHHHHHHHHHHHHHhh---cCcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccccCcccchhhc
Confidence            999999999999999999   9999999999999997543   4699999887643221     1222234567888999


Q ss_pred             CCcccCC-----CCCCchhhHHHHHHHHHHHHcCCCCCcchhcccccc
Q 044746          151 APELWMP-----YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEW  193 (202)
Q Consensus       151 aPe~~~~-----~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~~~~  193 (202)
                      |||+..-     .-|+.++|.||+|+++|-|+.|.+||.+....++.|
T Consensus       254 APEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGW  301 (463)
T KOG0607|consen  254 APEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGW  301 (463)
T ss_pred             chhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCc
Confidence            9998742     358899999999999999999999999999888766

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.95  E-value=2.9e-29  Score=211.78  Aligned_cols=163  Identities=21%  Similarity=0.350  Sum_probs=138.4

Q ss_pred             ccCCcccCCcHHHHHHhcccccccccccc------ceEEEEEccCCchhhhhcc--CCCCHHHHHHHHHHHHHHHHHHHh
Q 044746           25 EMDKPIRFTSPQRMIAADNFSNLVGSEDT------ETYIKGFLAMGPFYLLCKK--NILGFGQLREIEVSTSKGIAYLHE   96 (202)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~   96 (202)
                      .......|..|..++...+|||||.-.+.      ..++.|||++|+|..+++.  +.+++.+...+.++|+.|++||-+
T Consensus       670 tekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsd  749 (996)
T KOG0196|consen  670 TEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSD  749 (996)
T ss_pred             cHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhh
Confidence            33455679999999999999999854433      3488999999999999854  459999999999999999999999


Q ss_pred             CCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccC-cccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHH
Q 044746           97 ECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH-THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFE  175 (202)
Q Consensus        97 ~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~-~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~e  175 (202)
                         ++.+||||..+|||++.+-.+|++|||+++.+.++. ...+..+-.-+.+|.|||.+..+.++.++|+||||+++||
T Consensus       750 ---m~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWE  826 (996)
T KOG0196|consen  750 ---MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWE  826 (996)
T ss_pred             ---cCchhhhhhhhheeeccceEEEeccccceeecccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEE
Confidence               999999999999999999999999999999765443 2222233333678999999999999999999999999999


Q ss_pred             HHc-CCCCCcchhccc
Q 044746          176 VVG-RRRNLEKEISEG  190 (202)
Q Consensus       176 l~~-g~~p~~~~~~~~  190 (202)
                      +++ |++|+.+.++++
T Consensus       827 VmSyGERPYWdmSNQd  842 (996)
T KOG0196|consen  827 VMSYGERPYWDMSNQD  842 (996)
T ss_pred             ecccCCCcccccchHH
Confidence            886 999999887765

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.95  E-value=3.3e-27  Score=191.34  Aligned_cols=111  Identities=28%  Similarity=0.408  Sum_probs=93.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++++|||++................++..|+|||
T Consensus       175 ~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  251 (343)
T cd05103         175 VLTLEDLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPE  251 (343)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceECcH
Confidence            36788899999999999999999   999999999999999999999999999987643322212222233467899999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      .+.+..++.++|+||||++++++++ |..||....
T Consensus       252 ~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~  286 (343)
T cd05103         252 TIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK  286 (343)
T ss_pred             HhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCcc
Confidence            9988889999999999999999996 999997543

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=3.9e-27  Score=183.53  Aligned_cols=182  Identities=20%  Similarity=0.223  Sum_probs=143.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcH-HHHHHhcccccccc------ccccceEEEEEccCCchhhhh-cc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSP-QRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC-KK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~-~~   72 (202)
                      |-.++.....++.|.|+-++.-....+...=.+.| ..-.+..|+|-++|      ...-.+++.+|.++|.|.-.+ ..
T Consensus       266 vl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlffvieyv~ggdlmfhmqrq  345 (593)
T KOG0695|consen  266 VLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ  345 (593)
T ss_pred             hhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEEEEEEecCcceeeehhhh
Confidence            44677888899999888766544433332222222 23345677887766      344456889999999875544 55


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ++++++.++.+...|+.||.|||+   +|||.||||.+|+|++..|++||.|+|+++.--.  ........+|||.|+||
T Consensus       346 rklpeeharfys~ei~lal~flh~---rgiiyrdlkldnvlldaeghikltdygmcke~l~--~gd~tstfcgtpnyiap  420 (593)
T KOG0695|consen  346 RKLPEEHARFYSAEICLALNFLHE---RGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLG--PGDTTSTFCGTPNYIAP  420 (593)
T ss_pred             hcCcHHHhhhhhHHHHHHHHHHhh---cCeeeeeccccceEEccCCceeecccchhhcCCC--CCcccccccCCCcccch
Confidence            679999999999999999999999   9999999999999999999999999999984221  12234557889999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |.+.+..|...+|+|++|++++||+.|+.||+--.
T Consensus       421 eilrgeeygfsvdwwalgvlmfemmagrspfdivg  455 (593)
T KOG0695|consen  421 EILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVG  455 (593)
T ss_pred             hhhcccccCceehHHHHHHHHHHHHcCCCCcceec
Confidence            99999999999999999999999999999997433

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.95  E-value=4.6e-29  Score=191.67  Aligned_cols=180  Identities=20%  Similarity=0.230  Sum_probs=147.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc------cccceEEEEEccCCchhhhhc--c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS------EDTETYIKGFLAMGPFYLLCK--K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~~~~~~~~~~~~~~~l~~~~~--~   72 (202)
                      ||||.++.+++.+|.|-....     ....++..|..+....+.+.++..      ....+++++|+.-|+..+++.  +
T Consensus        49 V~KAIH~EsG~v~AIK~VPV~-----sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCGAGSiSDI~R~R~  123 (502)
T KOG0574|consen   49 VHKAIHRESGHVLAIKKVPVD-----TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAGSISDIMRARR  123 (502)
T ss_pred             HHHHHHhccCcEEEEEecCcc-----chHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcCCCcHHHHHHHhc
Confidence            689999999999986543222     223445566666666666665532      234578999999999988875  4


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      .++++.++..+.+..++||+|||.   ..-||||+|..|||+..+|.+||+|||++..+.+...  ....+.|||.||||
T Consensus       124 K~L~E~EIs~iL~~TLKGL~YLH~---~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMA--KRNTVIGTPFWMAP  198 (502)
T KOG0574|consen  124 KPLSEQEISAVLRDTLKGLQYLHD---LKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAP  198 (502)
T ss_pred             CCccHHHHHHHHHHHHhHHHHHHH---HHHHHhhcccccEEEcccchhhhhhccccchhhhhHH--hhCccccCcccccH
Confidence            469999999999999999999999   8899999999999999999999999999986654332  23557899999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      |++..-.|+.++||||+|++..||..|++|+.+..++-
T Consensus       199 EVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMR  236 (502)
T KOG0574|consen  199 EVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMR  236 (502)
T ss_pred             HHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccc
Confidence            99998899999999999999999999999999888764

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.95  E-value=3.1e-27  Score=183.93  Aligned_cols=179  Identities=23%  Similarity=0.326  Sum_probs=138.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++.. +..++.|+.+....   .....+..+.......+|++++.      ......++++++++++|..++..  
T Consensus        22 vy~~~~~~-~~~~~~k~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~   97 (261)
T cd05148          22 VWEGLWKN-RVRVAIKILKSDDL---LKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPE   97 (261)
T ss_pred             EEEeEecC-CCcEEEEeccccch---hhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEeecccCCHHHHHhcCC
Confidence            57777777 55666655433222   11234555666666777887653      44456789999999999998854  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       ..+++..+..++.|++.||.|||+   ++++|+||+|+||+++.++.++++|||.+..........  ....++..|+|
T Consensus        98 ~~~~~~~~~~~~~~~i~~al~~lH~---~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~~--~~~~~~~~~~~  172 (261)
T cd05148          98 GQVLPVASLIDMACQVAEGMAYLEE---QNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLS--SDKKIPYKWTA  172 (261)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccCcceEEEcCCceEEEccccchhhcCCccccc--cCCCCceEecC
Confidence             358999999999999999999999   999999999999999999999999999997654332221  12334678999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ||.+....++.++|+||||++++++++ |+.||.....
T Consensus       173 PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~  210 (261)
T cd05148         173 PEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNN  210 (261)
T ss_pred             HHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCH
Confidence            999988889999999999999999998 8999976553

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.95  E-value=1.1e-27  Score=189.52  Aligned_cols=153  Identities=24%  Similarity=0.329  Sum_probs=121.6

Q ss_pred             CCcHHHHHHhc-cccccc------cccccceEEEEEccCCchhhhhcc-----------------CCCCHHHHHHHHHHH
Q 044746           32 FTSPQRMIAAD-NFSNLV------GSEDTETYIKGFLAMGPFYLLCKK-----------------NILGFGQLREIEVST   87 (202)
Q Consensus        32 ~~~~~~~~~~~-~~~~~i------~~~~~~~~~~~~~~~~~l~~~~~~-----------------~~~~~~~~~~~~~~i   87 (202)
                      +..|....... +|++++      ...+...++++++.+++|..++..                 ..+++..+..++.|+
T Consensus        62 ~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi  141 (293)
T cd05053          62 LVSEMEMMKMIGKHKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQV  141 (293)
T ss_pred             HHHHHHHHHhhcCCCCeeeEEEEEcCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHH
Confidence            44444444344 678765      244556789999999999888742                 358899999999999


Q ss_pred             HHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHH
Q 044746           88 SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVF  167 (202)
Q Consensus        88 ~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diw  167 (202)
                      +.||.|||+   ++++||||||+||+++.++.++|+|||+++...............++..|+|||.+.+..++.++|+|
T Consensus       142 ~~al~~LH~---~~ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~  218 (293)
T cd05053         142 ARGMEFLAS---KKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVW  218 (293)
T ss_pred             HHHHHHHHH---CCccccccceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCccccee
Confidence            999999999   99999999999999999999999999999865433222222223346789999999888899999999


Q ss_pred             HHHHHHHHHHc-CCCCCcchh
Q 044746          168 SFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       168 s~G~~l~el~~-g~~p~~~~~  187 (202)
                      ||||++||+++ |..||....
T Consensus       219 slG~il~el~~~g~~p~~~~~  239 (293)
T cd05053         219 SFGVLLWEIFTLGGSPYPGIP  239 (293)
T ss_pred             ehhhHHHHHhcCCCCCCCCCC
Confidence            99999999997 999987654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.95  E-value=4.1e-27  Score=183.35  Aligned_cols=179  Identities=24%  Similarity=0.371  Sum_probs=135.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhcc---
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKK---   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~---   72 (202)
                      ||++.+..+..++++.+.... .    ....+..|.......+|++++.     ......++++++.+++|..+...   
T Consensus        22 v~~~~~~~~~~~~~k~~~~~~-~----~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~   96 (260)
T cd05070          22 VWMGTWNGNTKVAVKTLKPGT-M----SPESFLEEAQIMKKLRHDKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKDGEG   96 (260)
T ss_pred             EEEEEecCCceeEEEEecCCC-C----CHHHHHHHHHHHHhcCCCceEEEEeEECCCCcEEEEEecCCCcHHHHHHhcCC
Confidence            567766655554444443211 1    1234666666777778887642     23345688999999999888754   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.+++.||.|||+   ++++||||||+||+++.++.++|+|||++......... ......++..|+||
T Consensus        97 ~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aP  172 (260)
T cd05070          97 RALKLPNLVDMAAQVAAGMAYIER---MNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYT-ARQGAKFPIKWTAP  172 (260)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCccceEEEeCCceEEeCCceeeeeccCcccc-cccCCCCCccccCh
Confidence            348999999999999999999999   99999999999999999999999999999865432211 11222345679999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |.+....++.++|+||||++++++++ |++||.+...
T Consensus       173 E~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~  209 (260)
T cd05070         173 EAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNN  209 (260)
T ss_pred             HHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCH
Confidence            99988889999999999999999999 9999976543

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.95  E-value=1.9e-27  Score=189.70  Aligned_cols=154  Identities=25%  Similarity=0.338  Sum_probs=120.2

Q ss_pred             CCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhcc-----------------CCCCHHHHHHHHHHH
Q 044746           32 FTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-----------------NILGFGQLREIEVST   87 (202)
Q Consensus        32 ~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-----------------~~~~~~~~~~~~~~i   87 (202)
                      +..|....... +|++++.      ..+..+++++++.+++|..++..                 ..+++.+++.++.|+
T Consensus        70 ~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi  149 (307)
T cd05098          70 LISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQV  149 (307)
T ss_pred             HHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHH
Confidence            44444444443 6776652      34556788999999999888753                 248899999999999


Q ss_pred             HHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHH
Q 044746           88 SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVF  167 (202)
Q Consensus        88 ~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diw  167 (202)
                      +.||+|||+   ++++||||||+||+++.++.++|+|||+++...............+++.|+|||.+.+..++.++|+|
T Consensus       150 ~~aL~~lH~---~gi~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dvw  226 (307)
T cd05098         150 ARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVW  226 (307)
T ss_pred             HHHHHHHHH---CCcccccccHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHH
Confidence            999999999   99999999999999999999999999998755322211111222335689999999888899999999


Q ss_pred             HHHHHHHHHHc-CCCCCcchhc
Q 044746          168 SFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       168 s~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |+|+++|||++ |.+||.....
T Consensus       227 slG~~l~el~~~g~~p~~~~~~  248 (307)
T cd05098         227 SFGVLLWEIFTLGGSPYPGVPV  248 (307)
T ss_pred             HHHHHHHHHHcCCCCCCCcCCH
Confidence            99999999998 8899865443

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.95  E-value=2.5e-27  Score=189.74  Aligned_cols=153  Identities=24%  Similarity=0.342  Sum_probs=120.3

Q ss_pred             CCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhcc-----------------CCCCHHHHHHHHHHH
Q 044746           32 FTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-----------------NILGFGQLREIEVST   87 (202)
Q Consensus        32 ~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-----------------~~~~~~~~~~~~~~i   87 (202)
                      +..|....... +|++++.      ..+...++++++.+++|..++..                 ..+++.++..++.|+
T Consensus        64 ~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi  143 (314)
T cd05099          64 LISEMELMKLIGKHKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQV  143 (314)
T ss_pred             HHHHHHHHHhccCCCCeeeEEEEEccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHH
Confidence            44554444444 5887663      33446688899999999888743                 348899999999999


Q ss_pred             HHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHH
Q 044746           88 SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVF  167 (202)
Q Consensus        88 ~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diw  167 (202)
                      +.||.|||+   ++++||||||+||+++.++.++|+|||+++...............++..|+|||.+.+..++.++|+|
T Consensus       144 ~~aL~~lH~---~gi~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Diw  220 (314)
T cd05099         144 ARGMEYLES---RRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVW  220 (314)
T ss_pred             HHHHHHHHH---CCeeeccccceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhh
Confidence            999999999   99999999999999999999999999999865432211111122235679999999888899999999


Q ss_pred             HHHHHHHHHHc-CCCCCcchh
Q 044746          168 SFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       168 s~G~~l~el~~-g~~p~~~~~  187 (202)
                      |||+++||+++ |..||....
T Consensus       221 slG~~l~el~~~g~~p~~~~~  241 (314)
T cd05099         221 SFGILMWEIFTLGGSPYPGIP  241 (314)
T ss_pred             HHHHHHHHHHhCCCCCCCCCC
Confidence            99999999999 899987654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.95  E-value=2.5e-27  Score=187.31  Aligned_cols=179  Identities=20%  Similarity=0.262  Sum_probs=140.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++.+...++.++.|......   ......+..|.......+|++++.      .++...++++++.+++|..++....
T Consensus        35 v~~~~~~~~~~~~~iK~~~~~~---~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~  111 (285)
T cd06648          35 VCIATDKSTGRQVAVKKMDLRK---QQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIVTHTR  111 (285)
T ss_pred             EEEEEECCCCCEEEEEEEeccc---hhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCCCCHHHHHHhCC
Confidence            4667766666666666432211   111223455656666778887653      3455678899999999999888888


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++.++..++.|++.||.|||+   ++++||||+|+||+++.++.++++|||.+........  ......|++.|+|||.
T Consensus       112 ~~~~~~~~~~~ql~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~y~aPE~  186 (285)
T cd06648         112 MNEEQIATVCLAVLKALSFLHA---QGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVP--RRKSLVGTPYWMAPEV  186 (285)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHh---CCeecCCCChhhEEEcCCCcEEEcccccchhhccCCc--ccccccCCccccCHHH
Confidence            9999999999999999999999   9999999999999999999999999998875433221  1223457889999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +.+..++.++|+||+|++++++++|+.||....
T Consensus       187 ~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~  219 (285)
T cd06648         187 ISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEP  219 (285)
T ss_pred             hcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCC
Confidence            988889999999999999999999999997644

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.95  E-value=1.8e-27  Score=180.60  Aligned_cols=175  Identities=22%  Similarity=0.283  Sum_probs=128.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccccceEEEEEccCCchhh-----------h
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGPFYL-----------L   69 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~-----------~   69 (202)
                      |+|++.++++.+.|+|-.......+.. .+.+..-.+++...+-+-|+...  |+    |+.+.+...           +
T Consensus       108 V~k~~~rs~~~iiAVK~M~rt~Nkee~-kRILmDldvv~~s~dcpyIV~c~--Gy----Fi~n~dV~IcMelMs~C~ekL  180 (391)
T KOG0983|consen  108 VWKMRFRSTGHIIAVKQMRRTGNKEEN-KRILMDLDVVLKSHDCPYIVQCF--GY----FITNTDVFICMELMSTCAEKL  180 (391)
T ss_pred             eEEEEEcccceEEEEEeecccCCHHHH-HHHHHhhhHHhhccCCCeeeeee--eE----EeeCchHHHHHHHHHHHHHHH
Confidence            688999999999998876554433322 22233334444444445555322  22    222222211           1


Q ss_pred             h--ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCC
Q 044746           70 C--KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP  147 (202)
Q Consensus        70 ~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~  147 (202)
                      +  -++++++..+-.+...+.+||.||-.  +++|||||+||+|||++..|++||+|||.+-.+.+..-.   +...|.+
T Consensus       181 lkrik~piPE~ilGk~tva~v~AL~YLKe--KH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkAh---trsAGC~  255 (391)
T KOG0983|consen  181 LKRIKGPIPERILGKMTVAIVKALYYLKE--KHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKAH---TRSAGCA  255 (391)
T ss_pred             HHHhcCCchHHhhhhhHHHHHHHHHHHHH--hcceeecccCccceEEccCCCEEeecccccceeeccccc---ccccCCc
Confidence            1  24568888888999999999999998  589999999999999999999999999999876554332   3456799


Q ss_pred             cccCCcccCCC---CCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          148 GCEAPELWMPY---SVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       148 ~y~aPe~~~~~---~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      .|||||-+...   .|+.++||||||++++||.||+.||.+..
T Consensus       256 ~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~  298 (391)
T KOG0983|consen  256 AYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCK  298 (391)
T ss_pred             cccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCC
Confidence            99999998754   58899999999999999999999998743

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.95  E-value=1.1e-27  Score=187.52  Aligned_cols=178  Identities=24%  Similarity=0.248  Sum_probs=135.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccccc------------ccceEEEEEccCCchh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVGSE------------DTETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~------------~~~~~~~~~~~~~~l~   67 (202)
                      ||++++...++.++.|......    .....+..|....... +|++++...            ....++++++.+++|.
T Consensus        22 vy~~~~~~~~~~~aik~~~~~~----~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~   97 (272)
T cd06637          22 VYKGRHVKTGQLAAIKVMDVTG----DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVT   97 (272)
T ss_pred             EEEEEEcCCCcEEEEEEEEcCC----ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcEEEEEEEcCCCCcHH
Confidence            5788888888888887754321    1112333444444333 677765321            2346888999999998


Q ss_pred             hhhcc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCC
Q 044746           68 LLCKK---NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRR  144 (202)
Q Consensus        68 ~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~  144 (202)
                      .++..   ..+++..+..++.|++.|+.|||+   ++++|+||||+||+++.++.++|+|||++........  ......
T Consensus        98 ~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~---~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~~--~~~~~~  172 (272)
T cd06637          98 DLIKNTKGNTLKEEWIAYICREILRGLSHLHQ---HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVG--RRNTFI  172 (272)
T ss_pred             HHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHEEECCCCCEEEccCCCceecccccc--cCCccc
Confidence            88764   358999999999999999999999   9999999999999999999999999999976533221  123355


Q ss_pred             CCCcccCCcccC-----CCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          145 RTPGCEAPELWM-----PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       145 gt~~y~aPe~~~-----~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |++.|+|||++.     ...++.++|+||+||++|||++|+.||....
T Consensus       173 g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~  220 (272)
T cd06637         173 GTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMH  220 (272)
T ss_pred             ccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccC
Confidence            788999999986     3357889999999999999999999997543

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.95  E-value=3.6e-27  Score=187.16  Aligned_cols=180  Identities=19%  Similarity=0.253  Sum_probs=140.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++.+...+..++.|.....   .......+..|.......+|++++.      .....+++++++++++|..+.....
T Consensus        35 v~~~~~~~~~~~v~iK~~~~~---~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~  111 (293)
T cd06647          35 VYTAIDVATGQEVAIKQMNLQ---QQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETC  111 (293)
T ss_pred             EEEEEEcCCCCEEEEEEeccc---cchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecCCCCcHHHHHhhcC
Confidence            567776656666665543221   1111234555656666777887663      3345678899999999999998888


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++.++..++.|++.|+.|||+   ++++|+||+|+||+++.++.++|+|||++.........  .....+++.|++||.
T Consensus       112 l~~~~~~~i~~~l~~al~~LH~---~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~--~~~~~~~~~y~~PE~  186 (293)
T cd06647         112 MDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK--RSTMVGTPYWMAPEV  186 (293)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHh---CCEeeccCCHHHEEEcCCCCEEEccCcceecccccccc--cccccCChhhcCchh
Confidence            9999999999999999999999   99999999999999999999999999988754432221  123356888999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +....++.++|+||||+++|++++|+.||....+
T Consensus       187 ~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~  220 (293)
T cd06647         187 VTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENP  220 (293)
T ss_pred             hccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCh
Confidence            9888889999999999999999999999986654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.95  E-value=4.8e-27  Score=183.97  Aligned_cols=183  Identities=20%  Similarity=0.249  Sum_probs=138.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccC-------CcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMD-------KPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~   67 (202)
                      ||++.+...++.++.|..+........       ....+..|.......+|++++.      ......++++++.+++|.
T Consensus        17 vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   96 (272)
T cd06629          17 VYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEYLSIFLEYVPGGSIG   96 (272)
T ss_pred             EEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCceEEEEecCCCCcHH
Confidence            577877777777777654322111111       1123555666667777887642      334456888999999998


Q ss_pred             hhhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCC
Q 044746           68 LLCKK-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT  146 (202)
Q Consensus        68 ~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt  146 (202)
                      .++.. ..+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++++|||++................|+
T Consensus        97 ~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~  173 (272)
T cd06629          97 SCLRTYGRFEEQLVRFFTEQVLEGLAYLHS---KGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGS  173 (272)
T ss_pred             HHHhhccCCCHHHHHHHHHHHHHHHHHHhh---CCeeecCCChhhEEEcCCCeEEEeeccccccccccccccccccccCC
Confidence            88755 568999999999999999999999   99999999999999999999999999999764432222222334568


Q ss_pred             CcccCCcccCCCC--CCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          147 PGCEAPELWMPYS--VTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       147 ~~y~aPe~~~~~~--~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      ..|+|||.+....  ++.++|+||+|++++++++|..||...
T Consensus       174 ~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~  215 (272)
T cd06629         174 VFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDE  215 (272)
T ss_pred             ccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCc
Confidence            8999999987654  789999999999999999999999653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.95  E-value=3.5e-27  Score=184.36  Aligned_cols=172  Identities=20%  Similarity=0.273  Sum_probs=130.5

Q ss_pred             ceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--------CCCC
Q 044746           11 RFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--------NILG   76 (202)
Q Consensus        11 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--------~~~~   76 (202)
                      ..++.|.....  ........+..+.......+|++++.      ......++++++++++|..++..        ..++
T Consensus        27 ~~~~iK~~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~  104 (269)
T cd05044          27 IRVAVKTLRKG--ATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLT  104 (269)
T ss_pred             eeehhhhhhcc--cchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEeccCCCcHHHHHHHhhhcccCCcccc
Confidence            55665553221  11122334666777777788888763      23445688899999999888743        2378


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC-----ceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           77 FGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF-----FPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        77 ~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~-----~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                      +.++..++.|++.||.|||+   .+++|+||||+||+++.++     .++++|||++................++..|+|
T Consensus       105 ~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~a  181 (269)
T cd05044         105 LKELLDICLDVAKGCVYLEQ---MHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMA  181 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHh---CCcccCCCChheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccccC
Confidence            89999999999999999999   8999999999999999877     899999999875533222222222344678999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      ||.+.+..++.++|+||||++++||++ |+.||....
T Consensus       182 PE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~  218 (269)
T cd05044         182 PESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALN  218 (269)
T ss_pred             HHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccC
Confidence            999998889999999999999999998 999986543

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.95  E-value=2.7e-27  Score=192.46  Aligned_cols=178  Identities=16%  Similarity=0.191  Sum_probs=136.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc------------ccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE------------DTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------~~~~~~~~~~~~~~l~~   68 (202)
                      ||++++...+..++.|..+.... ......++..|.......+|++++...            ....++++++. ++|..
T Consensus        32 V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~  109 (353)
T cd07850          32 VCAAYDTVTGQNVAIKKLSRPFQ-NVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQDVYLVMELMD-ANLCQ  109 (353)
T ss_pred             EEEEEECCCCCEEEEEecCcccc-ChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccccCcEEEEEeccC-CCHHH
Confidence            57788877777777775432111 111222344566667777888776321            23467788876 46666


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      ..... ++...+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++.......   .....+++.
T Consensus       110 ~~~~~-l~~~~~~~~~~ql~~aL~~LH~---~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~---~~~~~~~~~  182 (353)
T cd07850         110 VIQMD-LDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM---MTPYVVTRY  182 (353)
T ss_pred             HHhhc-CCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEccCccceeCCCCCC---CCCCccccc
Confidence            66544 8999999999999999999999   9999999999999999999999999999986543222   223456889


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |+|||.+.+..++.++|+||+||++++|++|+.||....
T Consensus       183 y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~  221 (353)
T cd07850         183 YRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTD  221 (353)
T ss_pred             ccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCC
Confidence            999999999899999999999999999999999997543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.95  E-value=4.2e-27  Score=182.74  Aligned_cols=150  Identities=19%  Similarity=0.284  Sum_probs=122.5

Q ss_pred             cccCCcHHHHHHhcccccccccc-----ccceEEEEEccCCchhhhhccC--CCCHHHHHHHHHHHHHHHHHHHhCCCCC
Q 044746           29 PIRFTSPQRMIAADNFSNLVGSE-----DTETYIKGFLAMGPFYLLCKKN--ILGFGQLREIEVSTSKGIAYLHEECRQK  101 (202)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~  101 (202)
                      ...|..+.......+|++++...     ....++++++.+++|..++...  .+++..+..++.|++.||.|||+   ++
T Consensus        45 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~---~~  121 (259)
T cd05037          45 SLAFFETASLMSQLSHKHLVKLYGVCVRDENIMVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLED---KK  121 (259)
T ss_pred             HHHHHHHHHHHHcCCCcchhheeeEEecCCcEEEEEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhh---CC
Confidence            34566666677777888776322     3557899999999999888643  48999999999999999999999   99


Q ss_pred             eEEecCCCCcEEEcCCC-------ceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCC--CCCchhhHHHHHHH
Q 044746          102 IVHYDIKPESVLLDENF-------FPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPY--SVTQKCDVFSFGML  172 (202)
Q Consensus       102 iiHrdlk~~nil~~~~~-------~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~--~~~~~~Diws~G~~  172 (202)
                      ++||||||+||+++.++       .++++|||++.....      .....++..|+|||++.+.  .++.++|+||+|++
T Consensus       122 i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~  195 (259)
T cd05037         122 LVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLS------REERVERIPWIAPECIRNGQASLTIAADKWSFGTT  195 (259)
T ss_pred             eecccCccceEEEecCccccCCceeEEeCCCCccccccc------ccccccCCCccChhhhcCCCCCcchhhHHHHHHHH
Confidence            99999999999999877       799999999875432      1123346789999998876  78899999999999


Q ss_pred             HHHHHc-CCCCCcchh
Q 044746          173 LFEVVG-RRRNLEKEI  187 (202)
Q Consensus       173 l~el~~-g~~p~~~~~  187 (202)
                      ++|+++ |..||....
T Consensus       196 ~~~l~~~~~~p~~~~~  211 (259)
T cd05037         196 LLEICSNGEEPLSTLS  211 (259)
T ss_pred             HHHHHhCCCCCcccCC
Confidence            999999 688886654

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.94  E-value=2.6e-27  Score=184.82  Aligned_cols=155  Identities=23%  Similarity=0.278  Sum_probs=126.5

Q ss_pred             ccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCe
Q 044746           30 IRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-NILGFGQLREIEVSTSKGIAYLHEECRQKI  102 (202)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i  102 (202)
                      ..+..|.......+|++++.      ......++++++.+++|..++.. ..+++..+..++.|++.||.|||+   .++
T Consensus        47 ~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i  123 (265)
T cd06631          47 EKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFMEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHN---NCV  123 (265)
T ss_pred             HHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh---CCc
Confidence            34666666777778887652      44556788999999999988755 568999999999999999999999   999


Q ss_pred             EEecCCCCcEEEcCCCceEEeeeecceeccccC----cccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc
Q 044746          103 VHYDIKPESVLLDENFFPKAADFGLAKLYNREH----THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG  178 (202)
Q Consensus       103 iHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~----~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~  178 (202)
                      +|+||+|+||+++.++.++|+|||++.......    .........|+..|+|||++.+..++.++|+||+|++++++++
T Consensus       124 ~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~  203 (265)
T cd06631         124 VHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMAT  203 (265)
T ss_pred             ccCCcCHHhEEECCCCeEEeccchhhHhhhhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHh
Confidence            999999999999999999999999987542111    1111223457889999999998888999999999999999999


Q ss_pred             CCCCCcchh
Q 044746          179 RRRNLEKEI  187 (202)
Q Consensus       179 g~~p~~~~~  187 (202)
                      |+.||....
T Consensus       204 g~~p~~~~~  212 (265)
T cd06631         204 GKPPLASMD  212 (265)
T ss_pred             CCCccccCC
Confidence            999997543

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.94  E-value=3.1e-27  Score=190.86  Aligned_cols=180  Identities=21%  Similarity=0.319  Sum_probs=135.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc-----------ccceEEEEEccCCchhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE-----------DTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++++..+++.|+.|..+...  ......++..|.......+|++++...           ....++++++. +++...
T Consensus        21 vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~   97 (336)
T cd07849          21 VCSATHKPTGVKVAIKKISPFE--HQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDVYIVQELME-TDLYKL   97 (336)
T ss_pred             EEEEEEcCCCCeEEEEEecccc--cchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceEEEEehhcc-cCHHHH
Confidence            5788887777778777643211  111223344566666677788766422           12346666665 577778


Q ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc-ccCCCCCCCc
Q 044746           70 CKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-TSTGRRRTPG  148 (202)
Q Consensus        70 ~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~gt~~  148 (202)
                      .....+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.......... ......|++.
T Consensus        98 ~~~~~l~~~~~~~i~~ql~~aL~~LH~---~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~  174 (336)
T cd07849          98 IKTQHLSNDHIQYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRW  174 (336)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEECCCCCEEECcccceeeccccccccCCcCCcCcCCC
Confidence            877889999999999999999999999   999999999999999999999999999998654322111 1223457889


Q ss_pred             ccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          149 CEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       149 y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      |+|||.+.+ ..++.++|+||+|+++++|++|++||...
T Consensus       175 y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~  213 (336)
T cd07849         175 YRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGK  213 (336)
T ss_pred             ccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            999998754 46889999999999999999999999654

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.94  E-value=4.9e-27  Score=193.94  Aligned_cols=109  Identities=28%  Similarity=0.379  Sum_probs=92.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++...............+++.|+|||.
T Consensus       236 l~~~~~~~~~~qi~~aL~~LH~---~~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~  312 (401)
T cd05107         236 LSYMDLVGFSYQVANGMEFLAS---KNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPES  312 (401)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhc---CCcCcccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHH
Confidence            6777889999999999999999   9999999999999999999999999999986433222112223346788999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHc-CCCCCcch
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKE  186 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~  186 (202)
                      +....++.++|+||||++++|+++ |..||...
T Consensus       313 ~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~  345 (401)
T cd05107         313 IFNNLYTTLSDVWSFGILLWEIFTLGGTPYPEL  345 (401)
T ss_pred             hcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCC
Confidence            988889999999999999999998 89998654

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.94  E-value=4.2e-27  Score=185.69  Aligned_cols=179  Identities=21%  Similarity=0.215  Sum_probs=136.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++++...+..++.|..+...  .......+..|.......+|++++.      ..+...++++++++++|..++... 
T Consensus        17 v~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~   94 (286)
T cd06622          17 VYKVLHRPTGVTMAMKEIRLEL--DESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYMDAGSLDKLYAGGV   94 (286)
T ss_pred             EEEEEEcCCCcEEEEEEeeccc--CHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeecCCCCHHHHHHhcc
Confidence            5778887677777766433211  1111234555666666777887652      345567889999999998888664 


Q ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 ---ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 ---~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                         .+++..+..++.|++.||.|||+.  .+++|+||||+||+++.++.++++|||++.......    .....+++.|+
T Consensus        95 ~~~~~~~~~~~~~~~~i~~~l~~LH~~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~y~  168 (286)
T cd06622          95 ATEGIPEDVLRRITYAVVKGLKFLKEE--HNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASL----AKTNIGCQSYM  168 (286)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHhc--CCEeeCCCCHHHEEECCCCCEEEeecCCcccccCCc----cccCCCccCcc
Confidence               799999999999999999999962  599999999999999999999999999987543221    12234688999


Q ss_pred             CCcccCCC------CCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          151 APELWMPY------SVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       151 aPe~~~~~------~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |||.+.+.      .++.++|+||+||+++++++|+.||....
T Consensus       169 aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~  211 (286)
T cd06622         169 APERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPET  211 (286)
T ss_pred             CcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcc
Confidence            99998543      35789999999999999999999996543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.94  E-value=3.5e-27  Score=190.39  Aligned_cols=155  Identities=25%  Similarity=0.332  Sum_probs=122.1

Q ss_pred             cCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhcc-----------------CCCCHHHHHHHHHH
Q 044746           31 RFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-----------------NILGFGQLREIEVS   86 (202)
Q Consensus        31 ~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-----------------~~~~~~~~~~~~~~   86 (202)
                      .+..|....... +|++++.      ..+...++++++.+++|..++..                 ..+++..+..++.|
T Consensus        63 ~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q  142 (334)
T cd05100          63 DLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQ  142 (334)
T ss_pred             HHHHHHHHHHhhcCCCCeeeeeEEEccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHH
Confidence            455555555444 6887763      33456688999999999887743                 24788999999999


Q ss_pred             HHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhH
Q 044746           87 TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDV  166 (202)
Q Consensus        87 i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Di  166 (202)
                      ++.||.|||+   ++++||||||+||+++.++.++|+|||+++...............++..|+|||.+.+..++.++|+
T Consensus       143 i~~al~~LH~---~givH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  219 (334)
T cd05100         143 VARGMEYLAS---QKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDV  219 (334)
T ss_pred             HHHHHHHHHH---CCeeccccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhh
Confidence            9999999999   9999999999999999999999999999986543222211222334567999999988889999999


Q ss_pred             HHHHHHHHHHHc-CCCCCcchhc
Q 044746          167 FSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       167 ws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ||||++++||++ |..||.....
T Consensus       220 ~slG~il~el~~~g~~p~~~~~~  242 (334)
T cd05100         220 WSFGVLLWEIFTLGGSPYPGIPV  242 (334)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCH
Confidence            999999999998 8899876543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.94  E-value=4.2e-27  Score=187.93  Aligned_cols=185  Identities=16%  Similarity=0.208  Sum_probs=136.1

Q ss_pred             CCccccCC--CcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------c--cccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRG--STRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------S--EDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~--~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++.+..  .+..+|.|...............+..|..+....+|++++.      .  .....++++++++ ++...+
T Consensus        16 v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~   94 (316)
T cd07842          16 VYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYLLFDYAEH-DLWQII   94 (316)
T ss_pred             EEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEEEEeCCCc-CHHHHH
Confidence            57777766  67777777655432222222333455666677778887652      1  2445677787765 444443


Q ss_pred             c------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC----CCceEEeeeecceeccccCc-ccc
Q 044746           71 K------KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE----NFFPKAADFGLAKLYNREHT-HIT  139 (202)
Q Consensus        71 ~------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~----~~~~kl~dfgl~~~~~~~~~-~~~  139 (202)
                      .      ...++...+..++.|++.||.|||+   .+++||||||+||+++.    ++.+|++|||++........ ...
T Consensus        95 ~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~  171 (316)
T cd07842          95 KFHRQAKRVSIPPSMVKSLLWQILNGVHYLHS---NWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLAD  171 (316)
T ss_pred             HhhccCCCcCcCHHHHHHHHHHHHHHHHHHHh---CCEeeCCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccc
Confidence            2      1268899999999999999999999   99999999999999999    89999999999986543322 122


Q ss_pred             cCCCCCCCcccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          140 STGRRRTPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       140 ~~~~~gt~~y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      .....+++.|+|||.+.+ ..++.++|+||+|+++++|++|++||......
T Consensus       172 ~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~  222 (316)
T cd07842         172 LDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAK  222 (316)
T ss_pred             cCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCccc
Confidence            233456888999998766 45789999999999999999999999866543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.94  E-value=3.4e-27  Score=184.75  Aligned_cols=155  Identities=21%  Similarity=0.279  Sum_probs=125.4

Q ss_pred             ccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhccC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCe
Q 044746           30 IRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKKN--ILGFGQLREIEVSTSKGIAYLHEECRQKI  102 (202)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~i  102 (202)
                      ..+..|.......+|++++.     ......++++++++++|..++...  .+++..+..++.+++.||.|||+   .++
T Consensus        52 ~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~~  128 (270)
T cd05056          52 EKFLQEAYIMRQFDHPHIVKLIGVITENPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLES---KRF  128 (270)
T ss_pred             HHHHHHHHHHHhCCCCchhceeEEEcCCCcEEEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh---CCe
Confidence            35666777777778887763     233456888999999999988643  48999999999999999999999   999


Q ss_pred             EEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCC
Q 044746          103 VHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRR  181 (202)
Q Consensus       103 iHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~  181 (202)
                      +|+||||+||+++.++.++++|||+++......... .....++..|+|||.+....++.++|+||||++++|+++ |+.
T Consensus       129 ~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~  207 (270)
T cd05056         129 VHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYK-ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVK  207 (270)
T ss_pred             eccccChheEEEecCCCeEEccCceeeeccccccee-cCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999998654432211 112233568999999988889999999999999999886 999


Q ss_pred             CCcchhc
Q 044746          182 NLEKEIS  188 (202)
Q Consensus       182 p~~~~~~  188 (202)
                      ||.....
T Consensus       208 pf~~~~~  214 (270)
T cd05056         208 PFQGVKN  214 (270)
T ss_pred             CCCCCCH
Confidence            9976543

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=4.3e-27  Score=184.71  Aligned_cols=181  Identities=18%  Similarity=0.210  Sum_probs=138.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc---ccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD---NFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++.+..++..++.|+.+...  .......+..|..+....   .|++++.      .+....++++++.+++|..+..
T Consensus        17 v~~~~~~~~~~~~~iK~~~~~~--~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~e~~~~~~L~~~~~   94 (277)
T cd06917          17 VYRGKHVPTGRVVALKIINLDT--PDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIMEYAEGGSVRTLMK   94 (277)
T ss_pred             EEEEEEcCCCcEEEEEEecCCC--CchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEEecCCCCcHHHHHH
Confidence            5778877777777777643211  111122344444444443   3676652      3344568889999999999988


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                      .+.+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++++|||++........  ......|+..|+|
T Consensus        95 ~~~l~~~~~~~i~~~i~~~l~~lh~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~a  169 (277)
T cd06917          95 AGPIAEKYISVIIREVLVALKYIHK---VGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSS--KRSTFVGTPYWMA  169 (277)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcCHHHEEEcCCCCEEEccCCceeecCCCcc--ccccccCCcceeC
Confidence            8889999999999999999999999   9999999999999999999999999999986543321  1223457889999


Q ss_pred             CcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          152 PELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       152 Pe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ||.+.. ..++.++|+||+|+++|+|++|++||.....
T Consensus       170 PE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~  207 (277)
T cd06917         170 PEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDA  207 (277)
T ss_pred             HHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCCh
Confidence            998865 4578899999999999999999999976544

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.94  E-value=6.2e-27  Score=185.74  Aligned_cols=182  Identities=22%  Similarity=0.304  Sum_probs=136.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhc--cCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAME--MDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++.+..+++.++.|..+......  ......+..|.......+|++++.      ......++++++ +++|..++..
T Consensus        16 vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~i~~   94 (298)
T cd07841          16 VYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVFEFM-ETDLEKVIKD   94 (298)
T ss_pred             EEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEEccc-CCCHHHHHhc
Confidence            5788887767777766543332211  111222344555566667787652      344567888888 8899888866


Q ss_pred             C--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           73 N--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        73 ~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      .  .+++..+..++.|+++||.|||+   ++++|+||+|+||+++.++.++|+|||++........  ......+++.|+
T Consensus        95 ~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~  169 (298)
T cd07841          95 KSIVLTPADIKSYMLMTLRGLEYLHS---NWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNR--KMTHQVVTRWYR  169 (298)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCChhhEEEcCCCCEEEccceeeeeccCCCc--cccccccceeee
Confidence            5  49999999999999999999999   9999999999999999999999999999986543321  112234577899


Q ss_pred             CCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          151 APELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |||.+.+ ..++.++|+||+||+++|+++|.+||....+
T Consensus       170 aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~  208 (298)
T cd07841         170 APELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSD  208 (298)
T ss_pred             CHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCcc
Confidence            9998854 4578899999999999999999888875543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.94  E-value=8.1e-27  Score=180.47  Aligned_cols=180  Identities=21%  Similarity=0.268  Sum_probs=134.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++.... +..++.|+......  .+....+..|.......+|++++.      ..+...++++++++++|..++..  
T Consensus        11 vy~~~~~~-~~~~a~K~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~   87 (250)
T cd05085          11 VFKGTLKD-KTPVAVKTCKEDLP--QELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKK   87 (250)
T ss_pred             EEEEEecC-CcEEEEEecCCcCC--HHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHHHHHHhcC
Confidence            57776554 44455544322111  111123555666677778887653      33456788999999999888754  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.+++.||.|+|+   ++++|+||||+||+++.++.++|+|||++.......... .....++..|+||
T Consensus        88 ~~~~~~~~~~~~~~i~~~l~~lH~---~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~-~~~~~~~~~y~aP  163 (250)
T cd05085          88 DELKTKQLVKFALDAAAGMAYLES---KNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSS-SGLKQIPIKWTAP  163 (250)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccChheEEEcCCCeEEECCCccceecccccccc-CCCCCCcccccCH
Confidence            358899999999999999999999   999999999999999999999999999987543322211 1122335679999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      |++....++.++|+||+|++++++++ |..||....
T Consensus       164 E~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~  199 (250)
T cd05085         164 EALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMT  199 (250)
T ss_pred             HHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCC
Confidence            99988889999999999999999998 999997543

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.94  E-value=5.4e-27  Score=181.54  Aligned_cols=181  Identities=19%  Similarity=0.273  Sum_probs=135.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++.+.. ++.++.|..+.....  +....+..|..+....+|++++.      ......++++++.+++|..++..  
T Consensus        11 v~~~~~~~-~~~v~~K~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~   87 (251)
T cd05041          11 VYKGVLKG-NTEVAVKTCRSTLPP--DLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLLTFLRKKK   87 (251)
T ss_pred             EEEEEEeC-CCcEEEEeccccCCH--HHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHHHHHHhcC
Confidence            56777666 556665543222111  12234566666677778887652      34445688889999999888744  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.+++.||.|||+   ++++||||+|+||+++.++.++|+|||++................++..|+||
T Consensus        88 ~~~~~~~~~~~~~~~~~~l~~lH~---~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~P  164 (251)
T cd05041          88 NRLTVKKLLQMSLDAAAGMEYLES---KNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAP  164 (251)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCCh
Confidence            458899999999999999999999   99999999999999999999999999998754322211111122235679999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      |.+.+..++.++|+||+|++++|+++ |..||....
T Consensus       165 E~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~  200 (251)
T cd05041         165 EALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMS  200 (251)
T ss_pred             HhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCC
Confidence            99988889999999999999999999 889986544

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.94  E-value=5.1e-27  Score=186.21  Aligned_cols=154  Identities=19%  Similarity=0.273  Sum_probs=123.4

Q ss_pred             cCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-------------CCCHHHHHHHHHHHHHHH
Q 044746           31 RFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-------------ILGFGQLREIEVSTSKGI   91 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~~~~~~~~~i~~~l   91 (202)
                      .|..|.......+|++++.      ......++++++.+++|..++...             .+++..+..++.|++.||
T Consensus        63 ~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al  142 (295)
T cd05097          63 DFLKEIKIMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGM  142 (295)
T ss_pred             HHHHHHHHHHhCCCCCcCeEEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHH
Confidence            4666767777788887653      345567899999999998877432             368889999999999999


Q ss_pred             HHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHH
Q 044746           92 AYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGM  171 (202)
Q Consensus        92 ~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~  171 (202)
                      .|||+   .+++|+||||+||+++.++.++|+|||++................++..|+|||.+....++.++|+||||+
T Consensus       143 ~~lH~---~~i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~  219 (295)
T cd05097         143 KYLAS---LNFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGV  219 (295)
T ss_pred             HHHHh---cCeeccccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHH
Confidence            99999   999999999999999999999999999987543322222222334567899999998888999999999999


Q ss_pred             HHHHHHc--CCCCCcchh
Q 044746          172 LLFEVVG--RRRNLEKEI  187 (202)
Q Consensus       172 ~l~el~~--g~~p~~~~~  187 (202)
                      ++++|++  |..||....
T Consensus       220 ~l~el~~~~~~~p~~~~~  237 (295)
T cd05097         220 TLWEMFTLCKEQPYSLLS  237 (295)
T ss_pred             HHHHHHHcCCCCCCcccC
Confidence            9999988  677886543

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.94  E-value=4.8e-27  Score=182.93  Aligned_cols=154  Identities=25%  Similarity=0.350  Sum_probs=121.1

Q ss_pred             ccCCcHHHHHHhcccccccc-------ccccceEEEEEccCCchhhhhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCCC
Q 044746           30 IRFTSPQRMIAADNFSNLVG-------SEDTETYIKGFLAMGPFYLLCKK--NILGFGQLREIEVSTSKGIAYLHEECRQ  100 (202)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~i~-------~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~  100 (202)
                      ..+..|.......+|++++.       ..+...++++++.+++|..++..  ...++..+..++.|++.||.|||+   .
T Consensus        41 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~  117 (262)
T cd05058          41 EQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLAS---K  117 (262)
T ss_pred             HHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---C
Confidence            34556666667778888763       23345688889999999998854  346788889999999999999999   9


Q ss_pred             CeEEecCCCCcEEEcCCCceEEeeeecceeccccCc--ccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc
Q 044746          101 KIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT--HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG  178 (202)
Q Consensus       101 ~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~--~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~  178 (202)
                      +++||||||+||+++.++.++|+|||+++.......  ........++..|+|||.+....++.++|+||||++++||++
T Consensus       118 ~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~  197 (262)
T cd05058         118 KFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT  197 (262)
T ss_pred             CccccccCcceEEEcCCCcEEECCccccccccCCcceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999875432211  011123345678999999988889999999999999999999


Q ss_pred             -CCCCCcch
Q 044746          179 -RRRNLEKE  186 (202)
Q Consensus       179 -g~~p~~~~  186 (202)
                       |.+||...
T Consensus       198 ~~~~~~~~~  206 (262)
T cd05058         198 RGAPPYPDV  206 (262)
T ss_pred             CCCCCCCCC
Confidence             56666543

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.94  E-value=3.7e-27  Score=183.66  Aligned_cols=183  Identities=20%  Similarity=0.198  Sum_probs=140.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++.....+..++.|+........  ....+..|.......+|++++.      ......++++++++++|..++..  
T Consensus        17 v~~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~l~~~~~~~~   94 (267)
T cd06610          17 VYAAICLPNNEKVAIKRIDLEKCQT--SVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPYLSGGSLLDIMKSSY   94 (267)
T ss_pred             EEEEEEcCCCcEEEEEEeccCCcch--HHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEeccCCCcHHHHHHHhc
Confidence            5677766666667766543221111  2344566666666777887653      34455688899999999888754  


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc--ccCCCCCCCc
Q 044746           73 --NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI--TSTGRRRTPG  148 (202)
Q Consensus        73 --~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~--~~~~~~gt~~  148 (202)
                        ..+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++..........  ......|+..
T Consensus        95 ~~~~~~~~~~~~~~~ql~~al~~lh~---~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~  171 (267)
T cd06610          95 PRGGLDEAIIATVLKEVLKGLEYLHS---NGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPC  171 (267)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCccccccccccccCChh
Confidence              358999999999999999999999   999999999999999999999999999987654332221  1233457889


Q ss_pred             ccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          149 CEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       149 y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |+|||.+... .++.++|+||+|+++++|++|+.||....+
T Consensus       172 y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~  212 (267)
T cd06610         172 WMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPP  212 (267)
T ss_pred             hcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccCh
Confidence            9999998776 788999999999999999999999976543

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.94  E-value=4.3e-27  Score=184.07  Aligned_cols=182  Identities=21%  Similarity=0.312  Sum_probs=135.8

Q ss_pred             CCccccCCCcc---eeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTR---FITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||+++....+.   .++.|+.+..  ........|..|.......+|+|++.      .+....++++++.+++|..++.
T Consensus        20 vy~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~   97 (269)
T cd05065          20 VCRGRLKLPGKREIFVAIKTLKSG--YTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIITEFMENGALDSFLR   97 (269)
T ss_pred             EEEEEEecCCCCceeEEEEEcCCC--CCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEEecCCCCcHHHHHh
Confidence            46666654433   4555554322  11112345667777777788888763      3344568889999999988875


Q ss_pred             c--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCC---CCCC
Q 044746           72 K--NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTG---RRRT  146 (202)
Q Consensus        72 ~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~---~~gt  146 (202)
                      .  +.+++.++..++.|++.||.|||+   .+++|+||||+||+++.++.++++|||++..............   ...+
T Consensus        98 ~~~~~~~~~~~~~i~~~l~~al~~lH~---~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~  174 (269)
T cd05065          98 QNDGQFTVIQLVGMLRGIAAGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIP  174 (269)
T ss_pred             hCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccChheEEEcCCCcEEECCCccccccccCccccccccccCCCcc
Confidence            4  458999999999999999999999   9999999999999999999999999999876543222111111   1124


Q ss_pred             CcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       147 ~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      ..|+|||.+.+..++.++|+||+|++++|+++ |..||....
T Consensus       175 ~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~  216 (269)
T cd05065         175 IRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMS  216 (269)
T ss_pred             eeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCC
Confidence            57999999998889999999999999999886 999997644

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=6.8e-28  Score=195.68  Aligned_cols=135  Identities=21%  Similarity=0.289  Sum_probs=119.3

Q ss_pred             ccccceEEEEEccCCchhhhhc-cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecc
Q 044746           50 SEDTETYIKGFLAMGPFYLLCK-KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA  128 (202)
Q Consensus        50 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~  128 (202)
                      ...+.+..++-+-+|.+..++. ++.+....++.++..+.+|++|||+   ++||.|||||+|++++.+|.+||.|||.|
T Consensus       491 d~kyvYmLmEaClGGElWTiLrdRg~Fdd~tarF~~acv~EAfeYLH~---k~iIYRDLKPENllLd~~Gy~KLVDFGFA  567 (732)
T KOG0614|consen  491 DSKYVYMLMEACLGGELWTILRDRGSFDDYTARFYVACVLEAFEYLHR---KGIIYRDLKPENLLLDNRGYLKLVDFGFA  567 (732)
T ss_pred             cchhhhhhHHhhcCchhhhhhhhcCCcccchhhhhHHHHHHHHHHHHh---cCceeccCChhheeeccCCceEEeehhhH
Confidence            3444556667788898877774 5579999999999999999999999   99999999999999999999999999999


Q ss_pred             eeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          129 KLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       129 ~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      +.+.....   .++.+|||.|.|||.+.....+..+|.||+|++++||++|++||.+.+++-
T Consensus       568 Kki~~g~K---TwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmk  626 (732)
T KOG0614|consen  568 KKIGSGRK---TWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMK  626 (732)
T ss_pred             HHhccCCc---eeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHH
Confidence            98766544   466788999999999999999999999999999999999999999888764

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.94  E-value=8.9e-27  Score=181.31  Aligned_cols=154  Identities=21%  Similarity=0.376  Sum_probs=124.8

Q ss_pred             cCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCe
Q 044746           31 RFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--NILGFGQLREIEVSTSKGIAYLHEECRQKI  102 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i  102 (202)
                      .|..|.......+|++++.      ......++++++.+++|..++..  ..+++..+..++.|++.||.|||+   .++
T Consensus        45 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i  121 (256)
T cd05113          45 EFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLES---KQF  121 (256)
T ss_pred             HHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCe
Confidence            3556666677778887653      23345788999999999888754  358999999999999999999999   999


Q ss_pred             EEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCC
Q 044746          103 VHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRR  181 (202)
Q Consensus       103 iHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~  181 (202)
                      +|+||||.||+++.++.++++|||+++....... .......++..|+|||.+.+..++.++|+||||+++|+|++ |+.
T Consensus       122 ~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~  200 (256)
T cd05113         122 IHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEY-TSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKM  200 (256)
T ss_pred             eccccCcceEEEcCCCCEEECCCccceecCCCce-eecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999886543322 11222334678999999988889999999999999999998 999


Q ss_pred             CCcchhc
Q 044746          182 NLEKEIS  188 (202)
Q Consensus       182 p~~~~~~  188 (202)
                      ||....+
T Consensus       201 p~~~~~~  207 (256)
T cd05113         201 PYERFNN  207 (256)
T ss_pred             CcCcCCH
Confidence            9875443

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.94  E-value=3.4e-27  Score=183.21  Aligned_cols=180  Identities=18%  Similarity=0.252  Sum_probs=138.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++.+...++.++.|..+.....  .....+..|.......+|++++.      ..+...+++++++++++..+...  
T Consensus        16 v~~~~~~~~~~~~~iK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~   93 (255)
T cd08219          16 ALLVQHVNSDQKYAMKEIRLPKSS--SAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYCDGGDLMQKIKLQR   93 (255)
T ss_pred             EEEEEEcCCCceEEEEEEEcCcch--HHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeCCCCcHHHHHHhcc
Confidence            466777766777776653221111  11234455656666777887652      44566788999999999887643  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       ..++...+..++.|++.||.|||+   ++++|+||||+||+++.++.++++|||++.........  .....|++.|+|
T Consensus        94 ~~~~~~~~~~~~~~~i~~al~~lH~---~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~~a  168 (255)
T cd08219          94 GKLFPEDTILQWFVQMCLGVQHIHE---KRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAY--ACTYVGTPYYVP  168 (255)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCcceEEECCCCcEEEcccCcceeecccccc--cccccCCccccC
Confidence             358999999999999999999999   99999999999999999999999999999765432211  123456889999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ||++.+..++.++|+||+|+++++|++|+.||....
T Consensus       169 PE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~  204 (255)
T cd08219         169 PEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANS  204 (255)
T ss_pred             HHHHccCCcCchhhhhhhchhheehhhccCCCCCCC
Confidence            999988889999999999999999999999998654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.94  E-value=4.9e-27  Score=185.74  Aligned_cols=154  Identities=18%  Similarity=0.281  Sum_probs=121.6

Q ss_pred             cCCcHHHHHHhccccccc------cccccceEEEEEccCCchhhhhcc-----------CCCCHHHHHHHHHHHHHHHHH
Q 044746           31 RFTSPQRMIAADNFSNLV------GSEDTETYIKGFLAMGPFYLLCKK-----------NILGFGQLREIEVSTSKGIAY   93 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~~~i~~~l~~   93 (202)
                      .+..+.......+|++++      .......++++++.+|+|..++..           ...+...+..++.|++.||.|
T Consensus        55 ~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  134 (288)
T cd05061          55 EFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAY  134 (288)
T ss_pred             HHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            345555566667777665      244456788999999999988853           235677889999999999999


Q ss_pred             HHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHH
Q 044746           94 LHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLL  173 (202)
Q Consensus        94 lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l  173 (202)
                      ||+   ++++||||||+||+++.++.++|+|||+++...............++..|+|||.+.+..++.++|+||+||++
T Consensus       135 lH~---~~i~H~dikp~nili~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l  211 (288)
T cd05061         135 LNA---KKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVL  211 (288)
T ss_pred             HHh---CCCcCCCCChheEEEcCCCcEEECcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHH
Confidence            999   99999999999999999999999999998754332221112222346789999999888899999999999999


Q ss_pred             HHHHc-CCCCCcchh
Q 044746          174 FEVVG-RRRNLEKEI  187 (202)
Q Consensus       174 ~el~~-g~~p~~~~~  187 (202)
                      +|+++ |..||....
T Consensus       212 ~el~~~~~~p~~~~~  226 (288)
T cd05061         212 WEITSLAEQPYQGLS  226 (288)
T ss_pred             HHHHhCCCCCCCCCC
Confidence            99998 788987544

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.94  E-value=1.1e-26  Score=183.75  Aligned_cols=179  Identities=18%  Similarity=0.235  Sum_probs=132.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++.+...+..++.|+.+....  ......+..|.......+|++++.      .+...+++++++. +++...+..  
T Consensus        21 v~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~   97 (291)
T cd07870          21 VYKGISRINGQLVALKVISMKTE--EGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVFEYMH-TDLAQYMIQHP   97 (291)
T ss_pred             EEEEEEcCCCcEEEEEEecccCc--CCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEEeccc-CCHHHHHHhCC
Confidence            57777777777777766433211  111223445666666778888752      3344567788886 555554432  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||+++.......  ......+++.|+||
T Consensus        98 ~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~--~~~~~~~~~~y~aP  172 (291)
T cd07870          98 GGLHPYNVRLFMFQLLRGLAYIHG---QHILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQ--TYSSEVVTLWYRPP  172 (291)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHHEEEcCCCcEEEeccccccccCCCCC--CCCCccccccccCC
Confidence            457889999999999999999999   9999999999999999999999999999875432211  11223458899999


Q ss_pred             cccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |.+.+. .++.++|+||+|++++++++|+.||....
T Consensus       173 E~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~  208 (291)
T cd07870         173 DVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVS  208 (291)
T ss_pred             ceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCch
Confidence            998753 57889999999999999999999997544

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.94  E-value=5e-27  Score=186.91  Aligned_cols=183  Identities=19%  Similarity=0.247  Sum_probs=135.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc--------------ccceEEEEEccCCch
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE--------------DTETYIKGFLAMGPF   66 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------------~~~~~~~~~~~~~~l   66 (202)
                      ||++++...++.++.|........ ......+..|.......+|++++...              ....++++++.+ ++
T Consensus        28 v~~~~~~~~~~~~aik~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l  105 (310)
T cd07865          28 VFKARHKKTKQIVALKKVLMENEK-EGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYKGSFYLVFEFCEH-DL  105 (310)
T ss_pred             EEEEEECCCCcEEEEEEEeccCCc-CCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCCceEEEEEcCCCc-CH
Confidence            678888888888887754332111 11122334466666777888776322              223677777764 56


Q ss_pred             hhhhccC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc--cccCC
Q 044746           67 YLLCKKN--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH--ITSTG  142 (202)
Q Consensus        67 ~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~--~~~~~  142 (202)
                      ...+...  .+++.++..++.|++.||.|||+   ++++|+||||+||+++.++.++|+|||++.........  .....
T Consensus       106 ~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  182 (310)
T cd07865         106 AGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHR---NKILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTN  182 (310)
T ss_pred             HHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEECCCCcEEECcCCCcccccCCcccCCCCccC
Confidence            5555443  68999999999999999999999   99999999999999999999999999999865432211  11223


Q ss_pred             CCCCCcccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          143 RRRTPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       143 ~~gt~~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ..++..|+|||.+.+. .++.++|+||+|++++||++|++||....+
T Consensus       183 ~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~  229 (310)
T cd07865         183 RVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTE  229 (310)
T ss_pred             cccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCH
Confidence            4567889999988664 468899999999999999999999976554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.94  E-value=1e-26  Score=183.15  Aligned_cols=181  Identities=20%  Similarity=0.243  Sum_probs=138.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..++..++.|........ ......+..|.......+|++++.      .+....++++++ +++|..++..  
T Consensus        16 v~~~~~~~~~~~~~vK~~~~~~~~-~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~-~~~L~~~~~~~~   93 (286)
T cd07832          16 VFKAKDRETGETVALKKVALRRLE-GGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEYM-PSDLSEVLRDEE   93 (286)
T ss_pred             EEEEEECCCCceEEEEEEEccccc-chhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEeccc-CCCHHHHHHhcC
Confidence            578888777777776654332211 122334566666666777887652      345566888888 8999887743  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++.++..++.|++.||.|||+   .+++|+||||+||+++.++.++++|||++........ .......++..|+||
T Consensus        94 ~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aP  169 (286)
T cd07832          94 RPLPEAQVKSYMRMLLKGVAYMHA---NGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEP-RLYSHQVATRWYRAP  169 (286)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCC-CccccccCcccccCc
Confidence            468999999999999999999999   9999999999999999999999999999886543321 112234578899999


Q ss_pred             cccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |.+.+. .++.++|+||+|++++|+++|.+||....
T Consensus       170 E~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~  205 (286)
T cd07832         170 ELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGEN  205 (286)
T ss_pred             eeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCC
Confidence            998654 46889999999999999999988886544

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.94  E-value=6.7e-27  Score=182.78  Aligned_cols=155  Identities=22%  Similarity=0.348  Sum_probs=123.3

Q ss_pred             cCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCe
Q 044746           31 RFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--NILGFGQLREIEVSTSKGIAYLHEECRQKI  102 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i  102 (202)
                      .+..|.......+|++++.      ..+...++++++++++|..++..  ..+++.++..++.|++.|+.|||+   .++
T Consensus        52 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~---~~i  128 (268)
T cd05063          52 DFLSEASIMGQFSHHNIIRLEGVVTKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSD---MNY  128 (268)
T ss_pred             HHHHHHHHHhcCCCCCeeEEEEEEccCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCe
Confidence            3555666666777887653      33445688999999999888754  468999999999999999999999   999


Q ss_pred             EEecCCCCcEEEcCCCceEEeeeecceeccccCccc-ccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CC
Q 044746          103 VHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RR  180 (202)
Q Consensus       103 iHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~  180 (202)
                      +|+||||+||+++.++.++++|||++.......... .......+..|+|||++....++.++|+||||+++||+++ |+
T Consensus       129 ~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~  208 (268)
T cd05063         129 VHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGE  208 (268)
T ss_pred             eccccchhhEEEcCCCcEEECCCccceecccccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999997654322111 1111223457999999988888999999999999999997 99


Q ss_pred             CCCcchhc
Q 044746          181 RNLEKEIS  188 (202)
Q Consensus       181 ~p~~~~~~  188 (202)
                      .||.....
T Consensus       209 ~p~~~~~~  216 (268)
T cd05063         209 RPYWDMSN  216 (268)
T ss_pred             CCCCcCCH
Confidence            99965443

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.94  E-value=7.2e-27  Score=181.20  Aligned_cols=181  Identities=22%  Similarity=0.229  Sum_probs=140.6

Q ss_pred             CCccccCCCcceeehhhhchhhh--hccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDA--MEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++.+...+..++.|.......  ...+....+..|.......+|++++.      .+....+++++.++++|..++..
T Consensus        16 vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~   95 (258)
T cd06632          16 VYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFLELVPGGSLAKLLKK   95 (258)
T ss_pred             EEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEEEecCCCcHHHHHHh
Confidence            57777776666666665433221  11222345666767777778887652      33445688999999999888865


Q ss_pred             CC-CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 NI-LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 ~~-~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                      .. +++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++.......   ......|+..|++
T Consensus        96 ~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~---~~~~~~~~~~y~~  169 (258)
T cd06632          96 YGSFPEPVIRLYTRQILLGLEYLHD---RNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFS---FAKSFKGSPYWMA  169 (258)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEccCccceeccccc---cccccCCCcceeC
Confidence            44 8999999999999999999999   999999999999999999999999999987654332   1233456889999


Q ss_pred             CcccCCCC-CCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          152 PELWMPYS-VTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       152 Pe~~~~~~-~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ||.+.... ++.++|+||+|++++++++|++||....
T Consensus       170 pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~  206 (258)
T cd06632         170 PEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLE  206 (258)
T ss_pred             HHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCc
Confidence            99987766 8899999999999999999999997654

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=5.5e-27  Score=184.49  Aligned_cols=180  Identities=21%  Similarity=0.229  Sum_probs=139.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++...+..++.|+.+.....   ....+..|.......+|++++.      ......++++++++++|..+...  
T Consensus        21 v~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~   97 (280)
T cd06611          21 VYKAQHKETGLFAAAKIIQIESEE---ELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEFCDGGALDSIMLELE   97 (280)
T ss_pred             EEEEEEcCCCcEEEEEEEeeCCHH---HHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeeccCCCcHHHHHHHhc
Confidence            577887777777777765432211   1234555666667777887653      34456788999999999888754  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++.........  .....+++.|+||
T Consensus        98 ~~l~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~--~~~~~~~~~y~~P  172 (280)
T cd06611          98 RGLTEPQIRYVCRQMLEALNFLHS---HKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQK--RDTFIGTPYWMAP  172 (280)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEECCCCCEEEccCccchhhcccccc--cceeecchhhcCH
Confidence            469999999999999999999999   99999999999999999999999999988754322211  1234568899999


Q ss_pred             cccC-----CCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWM-----PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~-----~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |.+.     ...++.++|+||+|+++|++++|++||.....
T Consensus       173 E~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~  213 (280)
T cd06611         173 EVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNP  213 (280)
T ss_pred             HHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCH
Confidence            9875     34577899999999999999999999976543

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.94  E-value=8.7e-27  Score=184.96  Aligned_cols=154  Identities=18%  Similarity=0.289  Sum_probs=122.8

Q ss_pred             cCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC------------CCCHHHHHHHHHHHHHHHH
Q 044746           31 RFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN------------ILGFGQLREIEVSTSKGIA   92 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~~~~~~i~~~l~   92 (202)
                      .+..|.......+|++++.      ......++++++.+++|..++...            .+++..+..++.|++.||.
T Consensus        65 ~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~  144 (296)
T cd05095          65 DFLKEIKIMSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMK  144 (296)
T ss_pred             HHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHH
Confidence            4566666677778888653      345567889999999998877542            3677889999999999999


Q ss_pred             HHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHH
Q 044746           93 YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGML  172 (202)
Q Consensus        93 ~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~  172 (202)
                      |||+   .+++|+||||+||+++.++.++|+|||+++...............+++.|++||......++.++|+|||||+
T Consensus       145 ~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~  221 (296)
T cd05095         145 YLSS---LNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVT  221 (296)
T ss_pred             HHHH---CCeecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHH
Confidence            9999   9999999999999999999999999999876533222111222334678999999888889999999999999


Q ss_pred             HHHHHc--CCCCCcchh
Q 044746          173 LFEVVG--RRRNLEKEI  187 (202)
Q Consensus       173 l~el~~--g~~p~~~~~  187 (202)
                      +|||++  |..||....
T Consensus       222 l~el~~~~~~~p~~~~~  238 (296)
T cd05095         222 LWEILTLCKEQPYSQLS  238 (296)
T ss_pred             HHHHHHhCCCCCccccC
Confidence            999998  778886543

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.94  E-value=1.1e-26  Score=183.63  Aligned_cols=179  Identities=19%  Similarity=0.284  Sum_probs=135.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++.+...++.++.|..+....  ......+..|..+....+|++++.      ......++++++.+ +|..++..  
T Consensus        21 vy~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~~   97 (291)
T cd07844          21 VYKGRSKLTGQLVALKEIRLEHE--EGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEYLDT-DLKQYMDDCG   97 (291)
T ss_pred             EEEEEEcCCCcEEEEEEEecccc--cCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEecCCC-CHHHHHHhCC
Confidence            57888877777777776433221  112223445666777778887653      34456688888875 77776643  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++.......  ......++..|+||
T Consensus        98 ~~~~~~~~~~~~~ql~~al~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~~~aP  172 (291)
T cd07844          98 GGLSMHNVRLFLFQLLRGLAYCHQ---RRVLHRDLKPQNLLISERGELKLADFGLARAKSVPSK--TYSNEVVTLWYRPP  172 (291)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCeecccCCHHHEEEcCCCCEEECccccccccCCCCc--cccccccccccCCc
Confidence            358999999999999999999999   9999999999999999999999999999875432211  11223457889999


Q ss_pred             cccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |++.+ ..++.++|+||+|+++++|++|++||....
T Consensus       173 E~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~  208 (291)
T cd07844         173 DVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGST  208 (291)
T ss_pred             HHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence            99875 457899999999999999999999996544

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.94  E-value=6.2e-27  Score=198.45  Aligned_cols=149  Identities=21%  Similarity=0.281  Sum_probs=115.3

Q ss_pred             ccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC------CCCHHHHHHHHHHHHHHHHHHHhC
Q 044746           30 IRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN------ILGFGQLREIEVSTSKGIAYLHEE   97 (202)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~   97 (202)
                      ..+..|..+....+|+|++.      ..+..+++++++. +.+..++...      .....+++.++.|++.||.|||+ 
T Consensus       208 ~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~-  285 (501)
T PHA03210        208 IQLENEILALGRLNHENILKIEEILRSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHD-  285 (501)
T ss_pred             HHHHHHHHHHHhCCCCCcCcEeEEEEECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHh-
Confidence            34566777788889998874      2333445555554 4555554332      23456788899999999999999 


Q ss_pred             CCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHH
Q 044746           98 CRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV  177 (202)
Q Consensus        98 ~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~  177 (202)
                        ++|+||||||+|||++.++.+||+|||+++........ ......||+.|+|||++.+..++.++|||||||++|||+
T Consensus       286 --~gIiHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell  362 (501)
T PHA03210        286 --KKLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREA-FDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDML  362 (501)
T ss_pred             --CCeecCCCCHHHEEECCCCCEEEEeCCCceecCccccc-ccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHH
Confidence              99999999999999999999999999999865433221 123356899999999999989999999999999999999


Q ss_pred             cCCCCC
Q 044746          178 GRRRNL  183 (202)
Q Consensus       178 ~g~~p~  183 (202)
                      +|..++
T Consensus       363 ~~~~~p  368 (501)
T PHA03210        363 SHDFCP  368 (501)
T ss_pred             HCCCCC
Confidence            987543

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.94  E-value=7.9e-27  Score=181.33  Aligned_cols=149  Identities=25%  Similarity=0.383  Sum_probs=121.9

Q ss_pred             cCCcHHHHHHhcccccccc-------ccccceEEEEEccCCchhhhhccC---CCCHHHHHHHHHHHHHHHHHHHhCCCC
Q 044746           31 RFTSPQRMIAADNFSNLVG-------SEDTETYIKGFLAMGPFYLLCKKN---ILGFGQLREIEVSTSKGIAYLHEECRQ  100 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~-------~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~~~  100 (202)
                      .+..|.......+|++++.       .++...++++++++++|..++...   .+++..+..++.|++.||.|||+   +
T Consensus        45 ~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~  121 (256)
T cd05082          45 AFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEA---N  121 (256)
T ss_pred             HHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---C
Confidence            4566766777777886653       234456889999999998887543   38899999999999999999999   9


Q ss_pred             CeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-C
Q 044746          101 KIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-R  179 (202)
Q Consensus       101 ~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g  179 (202)
                      +++||||||+||+++.++.++|+|||+++......     ....++..|+|||++....++.++|+||+||+++||++ |
T Consensus       122 ~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g  196 (256)
T cd05082         122 NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFG  196 (256)
T ss_pred             CEeccccchheEEEcCCCcEEecCCccceeccccC-----CCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCC
Confidence            99999999999999999999999999987543221     11233568999999988889999999999999999997 9


Q ss_pred             CCCCcchh
Q 044746          180 RRNLEKEI  187 (202)
Q Consensus       180 ~~p~~~~~  187 (202)
                      +.||....
T Consensus       197 ~~p~~~~~  204 (256)
T cd05082         197 RVPYPRIP  204 (256)
T ss_pred             CCCCCCCC
Confidence            99987543

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.94  E-value=3.4e-27  Score=176.46  Aligned_cols=137  Identities=24%  Similarity=0.329  Sum_probs=110.1

Q ss_pred             cceEEEEEccCCchhhhh-----ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeec
Q 044746           53 TETYIKGFLAMGPFYLLC-----KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL  127 (202)
Q Consensus        53 ~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl  127 (202)
                      ..++...+...|+|.+.+     ++..+++.+.+.++.++++||++||+.. .+..||||||.|||+..++.+++.|||.
T Consensus        97 ~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~-~~yAH~DiKP~NILls~~~~~vl~D~GS  175 (302)
T KOG2345|consen   97 EAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKE-PPYAHRDIKPANILLSDSGLPVLMDLGS  175 (302)
T ss_pred             eEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccC-CcccccCCCcceeEecCCCceEEEeccC
Confidence            355777788999887776     3446999999999999999999999832 3599999999999999999999999999


Q ss_pred             ceeccccCc-------ccccCCCCCCCcccCCcccCC---CCCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          128 AKLYNREHT-------HITSTGRRRTPGCEAPELWMP---YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       128 ~~~~~~~~~-------~~~~~~~~gt~~y~aPe~~~~---~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      +....-...       .........|..|.|||++..   ...+.++|||||||++|+|+.|..||+..-..+
T Consensus       176 ~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~G  248 (302)
T KOG2345|consen  176 ATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQG  248 (302)
T ss_pred             ccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcC
Confidence            875431110       001112344889999999864   457899999999999999999999999887755

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.94  E-value=1.3e-26  Score=180.57  Aligned_cols=178  Identities=24%  Similarity=0.334  Sum_probs=135.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhcc---
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKK---   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~---   72 (202)
                      ||++....+.. ++.|......    .....+..|.......+|++++.     ......++++++.+++|..++..   
T Consensus        22 v~~~~~~~~~~-~a~K~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~   96 (260)
T cd05067          22 VWMGYYNGHTK-VAIKSLKQGS----MSPEAFLAEANLMKQLQHPRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPEG   96 (260)
T ss_pred             EEeeecCCCce-EEEEEecCCC----CcHHHHHHHHHHHHhcCCcCeeeEEEEEccCCcEEEEEcCCCCCHHHHHHhcCC
Confidence            57777666555 4444322211    11234666766777778887653     23345688889999999887643   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++.++..++.|++.||+|||+   .+++|+||||+||+++.++.++++|||++......... ......++..|+||
T Consensus        97 ~~~~~~~~~~i~~~i~~al~~LH~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~~p  172 (260)
T cd05067          97 IKLTINKLIDMAAQIAEGMAFIER---KNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYT-AREGAKFPIKWTAP  172 (260)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhc---CCeecccccHHhEEEcCCCCEEEccCcceeecCCCCcc-cccCCcccccccCH
Confidence            358999999999999999999999   99999999999999999999999999999765422211 11223346789999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      |++....++.++|+||||++++|+++ |++||....
T Consensus       173 e~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~  208 (260)
T cd05067         173 EAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMT  208 (260)
T ss_pred             HHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCC
Confidence            99988888999999999999999998 999997544

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.94  E-value=1.1e-26  Score=182.74  Aligned_cols=180  Identities=23%  Similarity=0.229  Sum_probs=143.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++.+..++..++.|+......  ......+..+.......+|++++.      .+....++++++.+++|..+.....
T Consensus        20 vy~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~i~~~~   97 (277)
T cd06641          20 VFKGIDNRTQKVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGP   97 (277)
T ss_pred             EEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCCCCcHHHHHhcCC
Confidence            67887777777777776432211  112234666666777788887662      3455678999999999999988888


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++..+..++.|++.|+.|||+   .+++|+||+|+||+++.++.++++|||++.........  .....++..|+|||.
T Consensus        98 ~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~y~~PE~  172 (277)
T cd06641          98 LDETQIATILREILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIK--RNTFVGTPFWMAPEV  172 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHHHcc---CCeecCCCCHHhEEECCCCCEEEeecccceecccchhh--hccccCCccccChhh
Confidence            9999999999999999999999   99999999999999999999999999998765432211  122456888999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +.+..++.++|+||+|++++++++|..||....
T Consensus       173 ~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~  205 (277)
T cd06641         173 IKQSAYDSKADIWSLGITAIELAKGEPPHSELH  205 (277)
T ss_pred             hccCCCCchhhHHHHHHHHHHHHcCCCCCCccc
Confidence            988888999999999999999999999997543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.94  E-value=9.3e-27  Score=180.74  Aligned_cols=181  Identities=17%  Similarity=0.242  Sum_probs=138.0

Q ss_pred             CccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC--
Q 044746            2 EKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN--   73 (202)
Q Consensus         2 ~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~--   73 (202)
                      |.+++...++.++.|...... .......++..|.......+|++++.      ......++++++.+++|.+++...  
T Consensus        17 ~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~~~~~~L~~~~~~~~~   95 (256)
T cd08221          17 TLYRRTEDDSLVVWKEVNLTR-LSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKG   95 (256)
T ss_pred             EEEEEcCCCcEEEEEEEeecc-cchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEecCCCcHHHHHHhccc
Confidence            445555555555554322111 11122334556666677778887653      344556788999999999888653  


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                       .+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++++|||++........  ......+++.|+||
T Consensus        96 ~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~--~~~~~~~~~~y~ap  170 (256)
T cd08221          96 QLFEEEMVLWYLFQIVSAVSYIHK---AGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYS--MAETVVGTPYYMSP  170 (256)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCChHhEEEeCCCCEEECcCcceEEcccccc--cccccCCCccccCH
Confidence             58999999999999999999999   8999999999999999999999999999986544332  12334578999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.+..++.++|+||+|++++||++|+.||.....
T Consensus       171 e~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~  206 (256)
T cd08221         171 ELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNP  206 (256)
T ss_pred             hhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCH
Confidence            999888889999999999999999999999976443

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.94  E-value=1.1e-26  Score=179.93  Aligned_cols=180  Identities=22%  Similarity=0.322  Sum_probs=138.4

Q ss_pred             CCccccCCCc----ceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGST----RFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++++...+    ..++.|..+.....  +....+..|.......+|++++.      ..+...++++++.+++|..++
T Consensus        15 v~~~~~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e~~~~~~l~~~~   92 (258)
T smart00219       15 VYKGTLKGLSGEKEVEVAVKTLKEDADE--QQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVMEYMEGGDLLDYL   92 (258)
T ss_pred             eEEEEecCCCCCCCceEEEEEccCCCCh--HHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEeccCCCCHHHHH
Confidence            4666665544    66776664332211  12345666666666678887653      334567888999999998888


Q ss_pred             ccCC---CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCC
Q 044746           71 KKNI---LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP  147 (202)
Q Consensus        71 ~~~~---~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~  147 (202)
                      ....   +++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++++|||++............ ...+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~ql~~~l~~lh~---~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~-~~~~~~  168 (258)
T smart00219       93 RKNRPKELSLSDLLSFALQIARGMEYLES---KNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKKK-GGKLPI  168 (258)
T ss_pred             HhhhhccCCHHHHHHHHHHHHHHHHHHhc---CCeeecccccceEEEccCCeEEEcccCCceecccccccccc-cCCCcc
Confidence            6543   9999999999999999999999   99999999999999999999999999999866544222211 223578


Q ss_pred             cccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcch
Q 044746          148 GCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKE  186 (202)
Q Consensus       148 ~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~  186 (202)
                      .|+|||.+....++.++|+||+|+++++|++ |++||...
T Consensus       169 ~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~  208 (258)
T smart00219      169 RWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGM  208 (258)
T ss_pred             cccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999988888999999999999999998 88998754

Phosphotransferases. Tyrosine-specific kinase subfamily.

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.94  E-value=1.2e-27  Score=186.63  Aligned_cols=176  Identities=22%  Similarity=0.317  Sum_probs=132.9

Q ss_pred             CCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC---CCCHH
Q 044746            8 GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN---ILGFG   78 (202)
Q Consensus         8 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~   78 (202)
                      ..+..|++|+.+..  ...+....|..+.......+|+|++.      ..+...++++++++|+|..++...   .+++.
T Consensus        26 ~~~~~V~vk~~~~~--~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~~~~g~L~~~L~~~~~~~~~~~  103 (259)
T PF07714_consen   26 DKNQPVAVKILKPS--SSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEYCPGGSLDDYLKSKNKEPLSEQ  103 (259)
T ss_dssp             SSEEEEEEEEESTT--SSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHH
T ss_pred             CCCEEEEEEEeccc--cccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            44555666554332  11112345666777777778998763      234467889999999999988765   79999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCC
Q 044746           79 QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPY  158 (202)
Q Consensus        79 ~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~  158 (202)
                      .+..++.|++.||.|||+   ++++|++|+++||+++.++.+||+|||++....................|+|||.+...
T Consensus       104 ~~~~i~~~i~~~l~~Lh~---~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~  180 (259)
T PF07714_consen  104 QRLSIAIQIAEALSYLHS---NNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDG  180 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHS
T ss_pred             cccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999   99999999999999999999999999999876332222223334457789999999888


Q ss_pred             CCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          159 SVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       159 ~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      .++.++||||||+++||+++ |+.||.....
T Consensus       181 ~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~  211 (259)
T PF07714_consen  181 EYTKKSDVYSFGMLLYEILTLGKFPFSDYDN  211 (259)
T ss_dssp             EESHHHHHHHHHHHHHHHHTTSSGTTTTSCH
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            89999999999999999999 7899876533

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.94  E-value=5.8e-27  Score=185.13  Aligned_cols=174  Identities=21%  Similarity=0.282  Sum_probs=131.0

Q ss_pred             CcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc----------
Q 044746            9 STRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK----------   72 (202)
Q Consensus         9 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~----------   72 (202)
                      ....++.|+.+....  ......+..|.......+|++++.      .+....++++++.+++|..++..          
T Consensus        34 ~~~~~aiK~~~~~~~--~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~  111 (288)
T cd05050          34 PFTMVAVKMLKEEAS--ADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLS  111 (288)
T ss_pred             cceeEEEEecCCCcC--HHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCccEEEEecCCCCCHHHHHHHcCcccccccc
Confidence            345555555432211  111234666767777778887763      34456788999999999888742          


Q ss_pred             -------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccc
Q 044746           73 -------------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT  139 (202)
Q Consensus        73 -------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~  139 (202)
                                   ..+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++++|||++...........
T Consensus       112 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~  188 (288)
T cd05050         112 HSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSE---RKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKA  188 (288)
T ss_pred             ccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---CCeecccccHhheEecCCCceEECccccceecccCccccc
Confidence                         237788899999999999999999   9999999999999999999999999999875433222222


Q ss_pred             cCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          140 STGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       140 ~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      ......+..|+|||.+.+..++.++|+|||||+++||++ |..||.+..
T Consensus       189 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~  237 (288)
T cd05050         189 SENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMA  237 (288)
T ss_pred             cCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC
Confidence            222334667999999988889999999999999999997 888986543

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.94  E-value=8.3e-27  Score=189.14  Aligned_cols=178  Identities=21%  Similarity=0.267  Sum_probs=133.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccccc-----------ceEEEEEccCCchhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSEDT-----------ETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~~~~~~~~~~~~l~~~   69 (202)
                      ||++++..+++.||.|..+.... .......+..|.......+|+++++..+.           ..++.+...+++|..+
T Consensus        33 v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~~~~~~~L~~~  111 (345)
T cd07877          33 VCAAFDTKTGLRVAVKKLSRPFQ-SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNI  111 (345)
T ss_pred             EEEEEEcCCCeEEEEEEecCcch-hhHHHHHHHHHHHHHHHcCCCcccceeeeeeecccccccccEEEEehhcccCHHHH
Confidence            56777766677777665432211 11112335556667777788987753321           1233334457788888


Q ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           70 CKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        70 ~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                      .....+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++......     .....++..|
T Consensus       112 ~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~~~-----~~~~~~~~~y  183 (345)
T cd07877         112 VKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVATRWY  183 (345)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChHHEEEcCCCCEEEeccccccccccc-----ccccccCCCc
Confidence            877789999999999999999999999   99999999999999999999999999998754321     2234568899


Q ss_pred             cCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          150 EAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       150 ~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +|||.+.+ ..++.++|+||+||+++|+++|++||....
T Consensus       184 ~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~  222 (345)
T cd07877         184 RAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTD  222 (345)
T ss_pred             cCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            99998866 467889999999999999999999996543

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.94  E-value=6.3e-27  Score=185.20  Aligned_cols=179  Identities=21%  Similarity=0.221  Sum_probs=133.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc---c--------cccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG---S--------EDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~---~--------~~~~~~~~~~~~~~~l~~   68 (202)
                      ||++.+..+++.++.|+.......    ...+..+....... +|+|++.   .        ++...++++++++++|..
T Consensus        38 vy~~~~~~~~~~~aik~~~~~~~~----~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~~~~~lv~ey~~~~sL~~  113 (291)
T cd06639          38 VYKVTNKKDGSLAAVKILDPISDV----DEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTE  113 (291)
T ss_pred             EEEEEECCCCCEEEEEEecccccH----HHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccCCCeeEEEEEECCCCcHHH
Confidence            577777777777777765332111    11233333333333 6776653   1        134578999999999988


Q ss_pred             hhc-----cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCC
Q 044746           69 LCK-----KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGR  143 (202)
Q Consensus        69 ~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~  143 (202)
                      +++     ...+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++.........  ....
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~--~~~~  188 (291)
T cd06639         114 LVKGLLICGQRLDEAMISYILYGALLGLQHLHN---NRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLR--RNTS  188 (291)
T ss_pred             HHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEEcCCCCEEEeecccchhccccccc--ccCc
Confidence            764     3568999999999999999999999   99999999999999999999999999998764332211  1234


Q ss_pred             CCCCcccCCcccCCC-----CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          144 RRTPGCEAPELWMPY-----SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~-----~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .|+..|+|||.+...     .++.++|+||+||+++||++|++||....+
T Consensus       189 ~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~  238 (291)
T cd06639         189 VGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHP  238 (291)
T ss_pred             cCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcH
Confidence            568899999987543     367899999999999999999999976543

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.94  E-value=6.6e-27  Score=183.17  Aligned_cols=184  Identities=17%  Similarity=0.207  Sum_probs=133.4

Q ss_pred             CCccccC---CCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc------------cceEEEEEccCCc
Q 044746            1 MEKPRNR---GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED------------TETYIKGFLAMGP   65 (202)
Q Consensus         1 v~k~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------~~~~~~~~~~~~~   65 (202)
                      ||++...   +.++.++.|+.+..... .....++..|.......+|++++...+            ...++.++..+++
T Consensus        15 v~~~~~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (273)
T cd05074          15 VREAQLKSEDGSFQKVAVKMLKADIFS-SSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPIPMVILPFMKHGD   93 (273)
T ss_pred             EEeeEeeccCCCceEEEEEEeccccCC-hHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcccceEEEEecCCCCc
Confidence            4555532   34566666654322111 112234556666777778888763221            1246677888898


Q ss_pred             hhhhhcc-------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc
Q 044746           66 FYLLCKK-------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI  138 (202)
Q Consensus        66 l~~~~~~-------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~  138 (202)
                      |..++..       ..+++.....++.|++.||.|||+   .+++||||||+||+++.++.++++|||+++.........
T Consensus        94 l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~nili~~~~~~kl~dfg~~~~~~~~~~~~  170 (273)
T cd05074          94 LHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSS---KNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYR  170 (273)
T ss_pred             HHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccchhhEEEcCCCCEEECcccccccccCCccee
Confidence            8766521       247889999999999999999999   999999999999999999999999999988654332222


Q ss_pred             ccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       139 ~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ......+++.|++||.+....++.++|+||||+++||+++ |++||.....
T Consensus       171 ~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~  221 (273)
T cd05074         171 QGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVEN  221 (273)
T ss_pred             cCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCH
Confidence            2223345678999999988888999999999999999999 8999875543

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.94  E-value=1.2e-26  Score=185.39  Aligned_cols=182  Identities=12%  Similarity=0.102  Sum_probs=138.1

Q ss_pred             CccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc---
Q 044746            2 EKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK---   72 (202)
Q Consensus         2 ~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~---   72 (202)
                      |.+++...++.+|.|..+... ...+....+..|.......+|++++.      ......++++++.++++..++..   
T Consensus        17 ~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~   95 (314)
T cd08216          17 HLAKHKPTNTLVAVKKINLDS-CSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCEDLLKTHFP   95 (314)
T ss_pred             EEEEecCCCCEEEEEEEeccc-cchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCHHHHHHHhcc
Confidence            455666667777777654321 22223445667777777778887663      33456688899999999888754   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc-----ccccCCCCCCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT-----HITSTGRRRTP  147 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~-----~~~~~~~~gt~  147 (202)
                      ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++++|||.+........     ........++.
T Consensus        96 ~~~~~~~~~~~~~~l~~~L~~LH~---~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (314)
T cd08216          96 EGLPELAIAFILKDVLNALDYIHS---KGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNL  172 (314)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCcceEEEecCCceEEecCccceeeccccccccccccccccccccc
Confidence            358899999999999999999999   9999999999999999999999999998875432111     01112234577


Q ss_pred             cccCCcccCC--CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          148 GCEAPELWMP--YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       148 ~y~aPe~~~~--~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      .|+|||++..  ..++.++|+||+|++++|+++|+.||....
T Consensus       173 ~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~  214 (314)
T cd08216         173 PWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMP  214 (314)
T ss_pred             cccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCC
Confidence            8999999875  357889999999999999999999997543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.94  E-value=7.1e-27  Score=181.64  Aligned_cols=181  Identities=20%  Similarity=0.266  Sum_probs=140.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++.+...+..++.|+...... ......++..+.......+|++++..        +....++++++.+++|..++..
T Consensus        16 v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~   94 (265)
T cd08217          16 VRKVRRKSDGKILVWKEIDYGNM-TEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQK   94 (265)
T ss_pred             EEEeeecCCCCEEEEEEEecccC-CHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEehhccCCCHHHHHHH
Confidence            57888877777777765432211 11122345556666777788877632        2334678889999999887743


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHH-----hCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCC
Q 044746           73 -----NILGFGQLREIEVSTSKGIAYLH-----EECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTG  142 (202)
Q Consensus        73 -----~~~~~~~~~~~~~~i~~~l~~lH-----~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~  142 (202)
                           ..+++..+..++.|++.||.|||     +   .+++|+||+|+||+++.++.++++|||++.........  ...
T Consensus        95 ~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~---~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~--~~~  169 (265)
T cd08217          95 CKKERKYIEEEFIWRILTQLLLALYECHNRSDPG---NTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSF--AKT  169 (265)
T ss_pred             HhhcccCCCHHHHHHHHHHHHHHHHHHhcCcccc---CcceecCCCHHHEEEecCCCEEEecccccccccCCccc--ccc
Confidence                 56899999999999999999999     6   89999999999999999999999999999865433221  123


Q ss_pred             CCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          143 RRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       143 ~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ..+++.|+|||.+....++.++|+||+|++++++++|+.||....
T Consensus       170 ~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  214 (265)
T cd08217         170 YVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARN  214 (265)
T ss_pred             cccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcC
Confidence            456889999999988888999999999999999999999998653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.94  E-value=1.1e-26  Score=184.15  Aligned_cols=154  Identities=21%  Similarity=0.304  Sum_probs=124.6

Q ss_pred             ccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC------------CCCHHHHHHHHHHHHHHH
Q 044746           30 IRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN------------ILGFGQLREIEVSTSKGI   91 (202)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~~~~~~i~~~l   91 (202)
                      ..+..|.......+|++++.      ..+...++++++.+++|..++...            .+++..+..++.|++.||
T Consensus        64 ~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al  143 (296)
T cd05051          64 EDFLKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGM  143 (296)
T ss_pred             HHHHHHHHHHHhcCCCCEeEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence            34556666677778887653      335667888999999998887443            489999999999999999


Q ss_pred             HHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHH
Q 044746           92 AYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGM  171 (202)
Q Consensus        92 ~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~  171 (202)
                      .|||+   .+++||||||+||+++.++.++|+|||+++...............+++.|+|||.+....++.++||||||+
T Consensus       144 ~~LH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~  220 (296)
T cd05051         144 RYLES---LNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGV  220 (296)
T ss_pred             HHHHH---cCccccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHH
Confidence            99999   999999999999999999999999999987654332222223344577899999998888999999999999


Q ss_pred             HHHHHHc--CCCCCcch
Q 044746          172 LLFEVVG--RRRNLEKE  186 (202)
Q Consensus       172 ~l~el~~--g~~p~~~~  186 (202)
                      ++||+++  |..||...
T Consensus       221 ~l~el~~~~~~~p~~~~  237 (296)
T cd05051         221 TLWEILTLCREQPYEHL  237 (296)
T ss_pred             HHHHHHhcCCCCCCCCc
Confidence            9999998  77787653

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.94  E-value=1.9e-26  Score=181.83  Aligned_cols=182  Identities=21%  Similarity=0.253  Sum_probs=139.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++.+..+++.++.|..+.... .......+..|.......+|++++.      .++...++++++.++.+..+... .
T Consensus        17 v~~~~~~~~~~~v~vK~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~l~~~~~~~~   95 (288)
T cd07833          17 VLKCRNKATGEIVAIKKFKESED-DEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEYVERTLLELLEASPG   95 (288)
T ss_pred             EEEEEeCCCCcEEEEehhhhhcc-cccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEecCCCCHHHHHHhcCC
Confidence            57788877777777776433221 2222344566666666667777653      33445688888888777665543 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.++..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++......... ......++..|+|||
T Consensus        96 ~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~~PE  171 (288)
T cd07833          96 GLPPDAVRSYIWQLLQAIAYCHS---HNIIHRDIKPENILVSESGVLKLCDFGFARALRARPAS-PLTDYVATRWYRAPE  171 (288)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCEEEEeeecccccCCCccc-cccCcccccCCcCCc
Confidence            58999999999999999999999   99999999999999999999999999998865433221 112345688899999


Q ss_pred             ccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ++... .++.++|+||+|++++++++|++||....
T Consensus       172 ~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~  206 (288)
T cd07833         172 LLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDS  206 (288)
T ss_pred             hhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            99887 78899999999999999999999997543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.94  E-value=1.6e-26  Score=182.08  Aligned_cols=180  Identities=21%  Similarity=0.284  Sum_probs=136.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc---
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK---   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~---   71 (202)
                      ||++++..+++.++.|..+... ........+..|.......+|++++.      .+....++++++. ++|..+..   
T Consensus        16 v~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~~~~~~   93 (284)
T cd07860          16 VYKARNKLTGEVVALKKIRLDT-ETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLH-QDLKKFMDASP   93 (284)
T ss_pred             EEEEEECCCCCEEEEEEccccc-cccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeeccc-cCHHHHHHhCC
Confidence            5788887777777776543221 12222334666777777888888663      3445567888885 56666553   


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                      ...+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++........  ......+++.|+|
T Consensus        94 ~~~l~~~~~~~~~~~i~~~l~~lh~---~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~a  168 (284)
T cd07860          94 LSGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR--TYTHEVVTLWYRA  168 (284)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEeeccchhhcccCcc--ccccccccccccC
Confidence            3568999999999999999999999   9999999999999999999999999999875432211  1122345788999


Q ss_pred             CcccCCCC-CCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          152 PELWMPYS-VTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       152 Pe~~~~~~-~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ||.+.+.. ++.++|+||||++++|++||+.||....
T Consensus       169 PE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~  205 (284)
T cd07860         169 PEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDS  205 (284)
T ss_pred             CeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            99887644 5888999999999999999999997544

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.94  E-value=9.4e-27  Score=187.93  Aligned_cols=182  Identities=18%  Similarity=0.230  Sum_probs=136.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc----------ccccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG----------SEDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----------~~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++++...+..++.|...... ........+..|..+....+|++++.          .+....++++++. ++|..++
T Consensus        21 v~~~~~~~~~~~valK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~   98 (334)
T cd07855          21 VCSAIDTRSGKKVAIKKIPHAF-DVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVYVVMDLME-SDLHHII   98 (334)
T ss_pred             EEEEEEcCCCCEEEEEEecccc-ccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEEEEEehhh-hhHHHHh
Confidence            5777777767777766543221 11222334555666777778888764          2234568888886 5777776


Q ss_pred             c-cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc--ccCCCCCCC
Q 044746           71 K-KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI--TSTGRRRTP  147 (202)
Q Consensus        71 ~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~--~~~~~~gt~  147 (202)
                      . ...+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||++..........  ......|+.
T Consensus        99 ~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~  175 (334)
T cd07855          99 HSDQPLTEEHIRYFLYQLLRGLKYIHS---ANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATR  175 (334)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEecccccceeecccCcCCCcccccccccc
Confidence            4 4458999999999999999999999   999999999999999999999999999997654322111  112345788


Q ss_pred             cccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          148 GCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       148 ~y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      .|+|||.+.. ..++.++|+||+|++++||++|++||....
T Consensus       176 ~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~  216 (334)
T cd07855         176 WYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKN  216 (334)
T ss_pred             cccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCC
Confidence            9999998765 457899999999999999999999997643

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.94  E-value=7.1e-27  Score=184.27  Aligned_cols=179  Identities=20%  Similarity=0.198  Sum_probs=135.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc-----------ccccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG-----------SEDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~-----------~~~~~~~~~~~~~~~~l~~   68 (202)
                      ||++++...+..++.|+.+.....    ...+..|....... +|++++.           .++...++++++++++|..
T Consensus        34 vy~~~~~~~~~~~~ik~~~~~~~~----~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~  109 (286)
T cd06638          34 VFKVLNKKNGSKAAVKILDPIHDI----DEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTD  109 (286)
T ss_pred             EEEEEECCCCceeEEEeeccccch----HHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCCeEEEEEeecCCCCHHH
Confidence            577888777777777764332111    12233344444443 6777653           2345679999999999987


Q ss_pred             hhc-----cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCC
Q 044746           69 LCK-----KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGR  143 (202)
Q Consensus        69 ~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~  143 (202)
                      ++.     ...+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++.......  .....
T Consensus       110 ~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~--~~~~~  184 (286)
T cd06638         110 LVKGFLKRGERMEEPIIAYILHEALMGLQHLHV---NKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRL--RRNTS  184 (286)
T ss_pred             HHHHhhccCccccHHHHHHHHHHHHHHHHHHHh---CCccccCCCHHhEEECCCCCEEEccCCceeecccCCC--ccccc
Confidence            653     3458899999999999999999999   9999999999999999999999999999886543221  12234


Q ss_pred             CCCCcccCCcccCC-----CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          144 RRTPGCEAPELWMP-----YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       144 ~gt~~y~aPe~~~~-----~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .|++.|+|||++..     ..++.++|+||+||+++||++|+.||....+
T Consensus       185 ~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~  234 (286)
T cd06638         185 VGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHP  234 (286)
T ss_pred             cCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCch
Confidence            57899999998753     3478899999999999999999999976543

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.94  E-value=9.6e-27  Score=183.26  Aligned_cols=179  Identities=23%  Similarity=0.257  Sum_probs=134.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------------ccccceEEEEEccCCchh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------------SEDTETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------------~~~~~~~~~~~~~~~~l~   67 (202)
                      ||++++...++.++.|+......    ....+..+....... +|++++.            ......++++++.+++|.
T Consensus        32 v~~~~~~~~~~~~a~K~~~~~~~----~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~  107 (282)
T cd06636          32 VYKGRHVKTGQLAAIKVMDVTED----EEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVT  107 (282)
T ss_pred             EEEEEEcCCCcEEEEEEEecChH----HHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCCEEEEEEEeCCCCcHH
Confidence            57788877788888876433211    112233343333333 6777652            234457899999999998


Q ss_pred             hhhcc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCC
Q 044746           68 LLCKK---NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRR  144 (202)
Q Consensus        68 ~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~  144 (202)
                      .+...   ..+++..+..++.|++.|+.|||+   .+++|+|++|+||+++.++.++|+|||++........  ......
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~---~~ivH~dl~~~nili~~~~~~~l~dfg~~~~~~~~~~--~~~~~~  182 (282)
T cd06636         108 DLVKNTKGNALKEDWIAYICREILRGLAHLHA---HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVG--RRNTFI  182 (282)
T ss_pred             HHHHHccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEeeCcchhhhhcccc--CCCccc
Confidence            87754   348888899999999999999999   9999999999999999999999999999875432211  123345


Q ss_pred             CCCcccCCcccC-----CCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          145 RTPGCEAPELWM-----PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       145 gt~~y~aPe~~~-----~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.|+|||.+.     ...++.++|+||+|+++|||++|+.||....+
T Consensus       183 ~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~  231 (282)
T cd06636         183 GTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHP  231 (282)
T ss_pred             ccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCH
Confidence            788999999875     34578899999999999999999999976543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.94  E-value=9e-27  Score=183.79  Aligned_cols=173  Identities=20%  Similarity=0.247  Sum_probs=133.0

Q ss_pred             cCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhhhhccC--CC
Q 044746            6 NRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYLLCKKN--IL   75 (202)
Q Consensus         6 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~~~~~~--~~   75 (202)
                      ....+..++.|..+..  ........+..|.......+|++++..        +....+++++.++++|..++...  .+
T Consensus        29 ~~~~~~~va~K~~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~  106 (284)
T cd05079          29 GDNTGEQVAVKSLKPE--SGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKI  106 (284)
T ss_pred             CCCccceEEEEEcCcc--ccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceEEEEEccCCCCHHHHHHhccCCC
Confidence            3455566666654322  112223456777777888888887632        23456889999999999887543  58


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc-cccCCCCCCCcccCCcc
Q 044746           76 GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-ITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        76 ~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~gt~~y~aPe~  154 (202)
                      ++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||+++........ .......++..|+|||+
T Consensus       107 ~~~~~~~i~~~i~~aL~~lH~---~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~  183 (284)
T cd05079         107 NLKQQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPEC  183 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH---CCeeecccchheEEEcCCCCEEECCCccccccccCccceeecCCCCCCccccCHHH
Confidence            999999999999999999999   99999999999999999999999999999865432221 11123445778999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCC
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNL  183 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~  183 (202)
                      +.+..++.++|+||+|++++|+++++.|.
T Consensus       184 ~~~~~~~~~~Di~slG~il~ellt~~~~~  212 (284)
T cd05079         184 LIQSKFYIASDVWSFGVTLYELLTYCDSE  212 (284)
T ss_pred             hccCCCCccccchhhhhhhhhhhcCCCCC
Confidence            98888999999999999999999987764

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.94  E-value=9.2e-27  Score=184.82  Aligned_cols=179  Identities=20%  Similarity=0.251  Sum_probs=140.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++.....++.++.|......   ......+..|.......+|++++.      .+....++++++++++|..+...+.
T Consensus        36 v~~~~~~~~~~~v~iK~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~  112 (292)
T cd06657          36 VCIATVKSSGKLVAVKKMDLRK---QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTR  112 (292)
T ss_pred             EEEEEEcCCCeEEEEEEecccc---hhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcHHHHHhcCC
Confidence            4667776666666666432111   112233555656666777887652      3556678999999999999988888


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++.....++.|++.|+.|||+   .+++|+||+|+||+++.++.++++|||++........  ......|++.|+|||.
T Consensus       113 ~~~~~~~~~~~ql~~~l~~lH~---~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~pE~  187 (292)
T cd06657         113 MNEEQIAAVCLAVLKALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--RRKSLVGTPYWMAPEL  187 (292)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEcccccceecccccc--cccccccCccccCHHH
Confidence            9999999999999999999999   9999999999999999999999999998875543221  1223456889999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +....++.++|+||+|++++++++|.+||....
T Consensus       188 ~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~  220 (292)
T cd06657         188 ISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP  220 (292)
T ss_pred             hcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            988888999999999999999999999987543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=8.9e-27  Score=189.77  Aligned_cols=181  Identities=18%  Similarity=0.224  Sum_probs=144.3

Q ss_pred             ccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc------cccccceEEEEEccCCchhhhhccC--C
Q 044746            3 KPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV------GSEDTETYIKGFLAMGPFYLLCKKN--I   74 (202)
Q Consensus         3 k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~~~~~~~l~~~~~~~--~   74 (202)
                      .||+.=.+.-||+|+-.+.......... +..|........|+|++      ...+-.+++.+.-.+|.|++++-++  .
T Consensus        36 LArHVFTGekVAVKviDKTKlD~~st~h-lfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLELGD~GDl~DyImKHe~G  114 (864)
T KOG4717|consen   36 LARHVFTGEKVAVKVIDKTKLDTLSTGH-LFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILELGDGGDLFDYIMKHEEG  114 (864)
T ss_pred             hhhhhcccceeEEEEecccccchhhhhH-HHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEecCCchHHHHHHhhhcc
Confidence            4666667778888876555444333333 33445555667788776      4555667888998999999988554  5


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc-CCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD-ENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~-~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      +.++.++.++.||..|+.|+|+   ..++||||||+|+++- .-|.+||.|||.+..+.....   .+..+|+..|-|||
T Consensus       115 l~E~La~kYF~QI~~AI~YCHq---LHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~k---L~TsCGSLAYSAPE  188 (864)
T KOG4717|consen  115 LNEDLAKKYFAQIVHAISYCHQ---LHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKK---LTTSCGSLAYSAPE  188 (864)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhh---hhhhcccCCcceeEEeeecCceEeeeccccccCCCcch---hhcccchhhccCch
Confidence            9999999999999999999999   8999999999999764 668999999999976655443   35567899999999


Q ss_pred             ccCCCCCC-chhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          154 LWMPYSVT-QKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       154 ~~~~~~~~-~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      ++.+..|+ +++||||+|++||-|+-|++||...++.+
T Consensus       189 ILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSE  226 (864)
T KOG4717|consen  189 ILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSE  226 (864)
T ss_pred             hhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchh
Confidence            99998887 66999999999999999999998776654

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.94  E-value=1.3e-26  Score=180.39  Aligned_cols=179  Identities=26%  Similarity=0.358  Sum_probs=135.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++.+.++.. ++.|......    .....+..|.......+|++++.      ......++++++++++|..++..  
T Consensus        22 v~~~~~~~~~~-~~vK~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~~   96 (261)
T cd05034          22 VWMGTWNGTTK-VAVKTLKPGT----MSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGE   96 (261)
T ss_pred             EEEEEEcCCce-EEEEEecCCc----cCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEeccCCCCHHHHHhccc
Confidence            57777655434 4444332211    11234566666777778887652      33456688889999999988854  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       ..+++..+..++.+++.|+.|||+   ++++|+||||+||+++.++.++++|||++......... ......++..|+|
T Consensus        97 ~~~~~~~~~~~~~~~i~~al~~lh~---~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~-~~~~~~~~~~y~~  172 (261)
T cd05034          97 GKKLRLPQLVDMAAQIAEGMAYLES---RNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYT-AREGAKFPIKWTA  172 (261)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcchheEEEcCCCCEEECccccceeccchhhh-hhhccCCCccccC
Confidence             358999999999999999999999   99999999999999999999999999998865432111 1112233568999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ||.+.+..++.++|+||+|++++++++ |+.||.+...
T Consensus       173 PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~  210 (261)
T cd05034         173 PEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTN  210 (261)
T ss_pred             HHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            999998889999999999999999998 9999976443

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.94  E-value=7.5e-27  Score=188.06  Aligned_cols=183  Identities=16%  Similarity=0.172  Sum_probs=138.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++...++.||.|+....... .+....+..|..+....+|+|++.      .++..+++++++.++++..++..  
T Consensus        16 v~~a~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~   94 (328)
T cd08226          16 VYLARHTPTGTLVTVRITDLENCT-EEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAYGSANSLLKTYF   94 (328)
T ss_pred             EEEEEEcCCCcEEEEEEeccccCC-HHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccCCCHHHHHHhhc
Confidence            678888888889998876432211 122345666777777788998763      44556788899999999887754  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc-----ccCCCCCC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-----TSTGRRRT  146 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~-----~~~~~~gt  146 (202)
                       ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++++||+.+..........     ......++
T Consensus        95 ~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (328)
T cd08226          95 PEGMSEALIGNILFGALRGLNYLHQ---NGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSV  171 (328)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccccccccccccccCc
Confidence             348999999999999999999999   999999999999999999999999997554221111000     00112235


Q ss_pred             CcccCCcccCCC--CCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          147 PGCEAPELWMPY--SVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       147 ~~y~aPe~~~~~--~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ..|+|||++.+.  .++.++|+||+||+++|+++|++||....
T Consensus       172 ~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~  214 (328)
T cd08226         172 LPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDML  214 (328)
T ss_pred             cCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcC
Confidence            679999998763  47899999999999999999999997543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.94  E-value=1e-26  Score=181.81  Aligned_cols=154  Identities=21%  Similarity=0.373  Sum_probs=125.0

Q ss_pred             cCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCe
Q 044746           31 RFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN--ILGFGQLREIEVSTSKGIAYLHEECRQKI  102 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~i  102 (202)
                      .+..|.......+|++++.      ..+...++++++++++|..++...  .+++.++..++.|++.|+.|||+   .++
T Consensus        51 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i  127 (267)
T cd05066          51 DFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSD---MGY  127 (267)
T ss_pred             HHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCE
Confidence            4566666677778888763      345567889999999998887543  58999999999999999999999   999


Q ss_pred             EEecCCCCcEEEcCCCceEEeeeecceeccccCccc-ccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CC
Q 044746          103 VHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RR  180 (202)
Q Consensus       103 iHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~  180 (202)
                      +||||||+||+++.++.++++|||++.......... ......++..|+|||++.+..++.++|+||||++++|+++ |+
T Consensus       128 ~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~  207 (267)
T cd05066         128 VHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGE  207 (267)
T ss_pred             eehhhchhcEEECCCCeEEeCCCCcccccccccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCC
Confidence            999999999999999999999999998654332211 1122223567999999998889999999999999999886 99


Q ss_pred             CCCcchh
Q 044746          181 RNLEKEI  187 (202)
Q Consensus       181 ~p~~~~~  187 (202)
                      .||....
T Consensus       208 ~p~~~~~  214 (267)
T cd05066         208 RPYWEMS  214 (267)
T ss_pred             CCcccCC
Confidence            9997654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.94  E-value=1.5e-26  Score=183.17  Aligned_cols=180  Identities=19%  Similarity=0.245  Sum_probs=134.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc------c--ccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS------E--DTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~--~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++.+...+..++.|..+..... ......+..|.......+|++++..      .  ...+++++++. ++|..++..
T Consensus        21 v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~   98 (293)
T cd07843          21 VYRARDKKTGEIVALKKLKMEKEK-EGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMVMEYVE-HDLKSLMET   98 (293)
T ss_pred             EEEEEECCCCcEEEEEEEeecccc-ccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEEehhcC-cCHHHHHHh
Confidence            577888766666666554332221 1222234456666667778876531      2  55667778776 477666643


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           73 --NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        73 --~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                        ..+++.++..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++.........  .....+++.|+
T Consensus        99 ~~~~l~~~~~~~i~~qi~~aL~~LH~---~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~--~~~~~~~~~~~  173 (293)
T cd07843          99 MKQPFLQSEVKCLMLQLLSGVAHLHD---NWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLKP--YTQLVVTLWYR  173 (293)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHHHEEECCCCcEEEeecCceeeccCCccc--ccccccccccc
Confidence              348999999999999999999999   99999999999999999999999999999865443211  12234588899


Q ss_pred             CCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          151 APELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       151 aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |||.+.+. .++.++|+||+|+++++|++|++||....
T Consensus       174 aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~  211 (293)
T cd07843         174 APELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKS  211 (293)
T ss_pred             CchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            99998754 46889999999999999999999997544

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.94  E-value=8.5e-27  Score=183.93  Aligned_cols=180  Identities=19%  Similarity=0.228  Sum_probs=141.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++...++.++.|+.....  .......+..|..+....+|++++.      ..+...++++++++++|..+... +
T Consensus        21 v~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~   98 (284)
T cd06620          21 VSKVKHIPTGTVMAKKVVHIGA--KSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEFMDCGSLDRIYKKGG   98 (284)
T ss_pred             EEEEEEcCCCcEEEEEEEEecC--cchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEecCCCCCHHHHHHhcc
Confidence            5777777777778877643321  1222344666666677778887653      33456688999999999887755 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.+++.||.|||+.  .+++|+||+|+||+++.++.++|+|||++.......    .....|+..|+|||
T Consensus        99 ~~~~~~~~~~~~~i~~~l~~LH~~--~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~----~~~~~~~~~~~aPE  172 (284)
T cd06620          99 PIPVEILGKIAVAVVEGLTYLYNV--HRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSI----ADTFVGTSTYMSPE  172 (284)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHh--cCeeccCCCHHHEEECCCCcEEEccCCcccchhhhc----cCccccCcccCCHH
Confidence            689999999999999999999962  589999999999999999999999999986542211    12345789999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..++.++|+||+||+++++++|+.||.....
T Consensus       173 ~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~  207 (284)
T cd06620         173 RIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNI  207 (284)
T ss_pred             HHccCCCCccchHHHHHHHHHHHHhCCCCCcccch
Confidence            99888889999999999999999999999986554

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.94  E-value=1.6e-26  Score=186.70  Aligned_cols=182  Identities=20%  Similarity=0.225  Sum_probs=134.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-cccccccc--------cccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVGS--------EDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~--------~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++.+..++..++.|...... ........+..|....... +|++++..        +....++++++. ++|..+..
T Consensus        23 v~~~~~~~~~~~~~vK~~~~~~-~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~  100 (337)
T cd07852          23 VWKAIDRRTKEVVALKKIFDAF-RNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIYLVFEYME-TDLHAVIR  100 (337)
T ss_pred             EEEEEEcCCCeEEEEEeecccc-CcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEEEEecccc-cCHHHHHh
Confidence            5777777666666555332111 1111223345566666666 88887532        123457777776 58888887


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc---cccCCCCCCCc
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH---ITSTGRRRTPG  148 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~---~~~~~~~gt~~  148 (202)
                      .+.+++.....++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.........   .......|+..
T Consensus       101 ~~~~~~~~~~~i~~qi~~~L~~LH~---~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~  177 (337)
T cd07852         101 ANILEDVHKRYIMYQLLKALKYIHS---GNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRW  177 (337)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEEeeccchhccccccccccCcchhccccccc
Confidence            7788999999999999999999999   99999999999999999999999999999865432211   12223457889


Q ss_pred             ccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          149 CEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       149 y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |+|||.+.+ ..++.++|+||+|+++++|++|++||....
T Consensus       178 y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~  217 (337)
T cd07852         178 YRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTS  217 (337)
T ss_pred             ccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCC
Confidence            999998765 457889999999999999999999997544

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.94  E-value=4.3e-27  Score=181.25  Aligned_cols=152  Identities=20%  Similarity=0.288  Sum_probs=121.1

Q ss_pred             CcHHHHHHhcccccccc-------ccccceEEEEEccCCchhhhhc------cCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q 044746           33 TSPQRMIAADNFSNLVG-------SEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVSTSKGIAYLHEECR   99 (202)
Q Consensus        33 ~~~~~~~~~~~~~~~i~-------~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~i~~~l~~lH~~~~   99 (202)
                      -.|..++....|+|++.       .....++..+|.+. .|..+++      .+.++...++.+..||+.|+.|||+   
T Consensus        75 cREiaL~REl~h~nvi~Lv~Vfl~~d~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~---  150 (438)
T KOG0666|consen   75 CREIALLRELKHPNVISLVKVFLSHDKKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHS---  150 (438)
T ss_pred             HHHHHHHHHhcCCcchhHHHHHhccCceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhh---
Confidence            35666777788888763       23444555555554 4555552      3358889999999999999999999   


Q ss_pred             CCeEEecCCCCcEEEcCC----CceEEeeeecceeccccCccc-ccCCCCCCCcccCCcccCCC-CCCchhhHHHHHHHH
Q 044746          100 QKIVHYDIKPESVLLDEN----FFPKAADFGLAKLYNREHTHI-TSTGRRRTPGCEAPELWMPY-SVTQKCDVFSFGMLL  173 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~----~~~kl~dfgl~~~~~~~~~~~-~~~~~~gt~~y~aPe~~~~~-~~~~~~Diws~G~~l  173 (202)
                      +-|+||||||.||++..+    |.+||+|+|+++.+.++.... ....++-|..|.|||++.+. .|+.+.|+||.||++
T Consensus       151 NWvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIf  230 (438)
T KOG0666|consen  151 NWVLHRDLKPANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIF  230 (438)
T ss_pred             hheeeccCCcceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHH
Confidence            999999999999999877    999999999999887654333 33445568999999999875 699999999999999


Q ss_pred             HHHHcCCCCCcchhc
Q 044746          174 FEVVGRRRNLEKEIS  188 (202)
Q Consensus       174 ~el~~g~~p~~~~~~  188 (202)
                      .||+|-+|.|.+...
T Consensus       231 aElLtl~PlF~g~E~  245 (438)
T KOG0666|consen  231 AELLTLEPLFKGREE  245 (438)
T ss_pred             HHHHccCccccchhh
Confidence            999999999987654

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=5.1e-27  Score=192.01  Aligned_cols=181  Identities=20%  Similarity=0.237  Sum_probs=131.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHh-cccccccc---ccccceEEEEEccCC--chhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAA-DNFSNLVG---SEDTETYIKGFLAMG--PFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~---~~~~~~~~~~~~~~~--~l~~~~~~~~   74 (202)
                      |||++..+..-++++++.-....  ..-..-|..|...+.. ..+.++|.   ..-...++.+.|+.|  .|..++++..
T Consensus       377 V~kV~~s~~~iyalkkv~~~~~D--~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE~Gd~DL~kiL~k~~  454 (677)
T KOG0596|consen  377 VFKVLNSDKQIYALKKVVLLEAD--NQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVMECGDIDLNKILKKKK  454 (677)
T ss_pred             eeeeecCCCcchhhhHHHHhhcC--HHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEeecccccHHHHHHhcc
Confidence            68888887777887777422211  1112335555444433 34445543   221122334444444  6777776554


Q ss_pred             --CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           75 --LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        75 --~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                        ++...++.+..|++.++.+.|+   .||||.||||.|+|+- .|.+||+|||.|..+..+.........+||+.||+|
T Consensus       455 ~~~~~~~lk~ywkqML~aV~~IH~---~gIVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsP  530 (677)
T KOG0596|consen  455 SIDPDWFLKFYWKQMLLAVKTIHQ---HGIVHSDLKPANFLLV-KGRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSP  530 (677)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHH---hceeecCCCcccEEEE-eeeEEeeeechhcccCccccceeeccccCcccccCH
Confidence              3433789999999999999999   9999999999999984 578999999999988877777777788999999999


Q ss_pred             cccCCCC-----------CCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWMPYS-----------VTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~~~~-----------~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |.+....           .+.++||||+||+||+|+.|++||....
T Consensus       531 EAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~  576 (677)
T KOG0596|consen  531 EALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQII  576 (677)
T ss_pred             HHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHH
Confidence            9986422           5688999999999999999999998655

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.94  E-value=1.8e-26  Score=181.36  Aligned_cols=178  Identities=20%  Similarity=0.232  Sum_probs=128.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc---c-----ccccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV---G-----SEDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~-----~~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++.+...+..++.|..+..... ......+.....+....+|++++   +     ..+...++++++.+ ++...+..
T Consensus        15 v~~~~~~~~~~~~aik~~~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~   92 (282)
T cd07831          15 VLKAQSRKTGKYYAIKCMKKHFKS-LEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFELMDM-NLYELIKG   92 (282)
T ss_pred             EEEEEEcCCCcEEEEEEehhccCC-chhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEecCCc-cHHHHHHh
Confidence            577887777777777764332111 11112222223333333467654   2     22556778888874 66555543


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           73 --NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        73 --~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                        ..+++.++..++.|++.||.|||+   .+++||||+|+||+++. +.++|+|||++.........   ....++..|+
T Consensus        93 ~~~~~~~~~~~~~~~qi~~~L~~LH~---~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~~---~~~~~~~~y~  165 (282)
T cd07831          93 RKRPLPEKRVKSYMYQLLKSLDHMHR---NGIFHRDIKPENILIKD-DILKLADFGSCRGIYSKPPY---TEYISTRWYR  165 (282)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHH---CCceecccCHHHEEEcC-CCeEEEecccccccccCCCc---CCCCCCcccC
Confidence              468999999999999999999999   99999999999999999 99999999999865432221   2234688999


Q ss_pred             CCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          151 APELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       151 aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |||.+.. ..++.++|+||+||+++||++|++||....
T Consensus       166 aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~  203 (282)
T cd07831         166 APECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTN  203 (282)
T ss_pred             ChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCC
Confidence            9997654 457889999999999999999999997654

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.94  E-value=1.3e-26  Score=181.00  Aligned_cols=184  Identities=20%  Similarity=0.247  Sum_probs=141.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhc---cCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAME---MDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++++..+++.++.|+.+......   ......+..|.......+|++++.      .++...++++++.+++|..++.
T Consensus        16 v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~v~e~~~~~~L~~~l~   95 (268)
T cd06630          16 CYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNLFVEWMAGGSVSHLLS   95 (268)
T ss_pred             EEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEEEEeccCCCcHHHHHH
Confidence            5777777777777776654322111   112345666777777778887663      4455678899999999988875


Q ss_pred             c-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC-ceEEeeeecceeccccCccc--ccCCCCCCC
Q 044746           72 K-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF-FPKAADFGLAKLYNREHTHI--TSTGRRRTP  147 (202)
Q Consensus        72 ~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~-~~kl~dfgl~~~~~~~~~~~--~~~~~~gt~  147 (202)
                      . ..+++..+..++.|++.||.|||+   ++++|+||+|+||+++.++ .++|+|||.+..........  ......++.
T Consensus        96 ~~~~~~~~~~~~~~~ql~~al~~LH~---~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~  172 (268)
T cd06630          96 KYGAFKEAVIINYTEQLLRGLSYLHE---NQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTI  172 (268)
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEEcccccccccccccccCCcccccccccc
Confidence            4 468999999999999999999999   9999999999999998775 58999999987654332111  112235688


Q ss_pred             cccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          148 GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       148 ~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      .|+|||.+.+..++.++|+||+|++++++++|+.||....
T Consensus       173 ~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~  212 (268)
T cd06630         173 AFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEK  212 (268)
T ss_pred             ceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999988888999999999999999999999996543

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.94  E-value=1.9e-26  Score=180.11  Aligned_cols=149  Identities=18%  Similarity=0.282  Sum_probs=119.7

Q ss_pred             ccCCcHHHHHHhccccccccc------cccceEEEEEccCCchhhhhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCC
Q 044746           30 IRFTSPQRMIAADNFSNLVGS------EDTETYIKGFLAMGPFYLLCKK--NILGFGQLREIEVSTSKGIAYLHEECRQK  101 (202)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~i~~------~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~  101 (202)
                      ..|..+.......+|++++..      .....++++++++++|..+...  ..+++..+..++.|++.||+|||+   ++
T Consensus        49 ~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~  125 (262)
T cd05077          49 LAFFETASMMRQVSHKHIVLLYGVCVRDVENIMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLED---KD  125 (262)
T ss_pred             HHHHHHHHHHHhCCCCCEeeEEEEEecCCCCEEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhh---CC
Confidence            345566667777889987742      3346688999999998877753  458999999999999999999999   99


Q ss_pred             eEEecCCCCcEEEcCCCc-------eEEeeeecceeccccCcccccCCCCCCCcccCCcccC-CCCCCchhhHHHHHHHH
Q 044746          102 IVHYDIKPESVLLDENFF-------PKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWM-PYSVTQKCDVFSFGMLL  173 (202)
Q Consensus       102 iiHrdlk~~nil~~~~~~-------~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~-~~~~~~~~Diws~G~~l  173 (202)
                      ++||||||+||+++.++.       ++++|||++......      ....++..|+|||.+. +..++.++||||||+++
T Consensus       126 ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l  199 (262)
T cd05077         126 LVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSR------QECVERIPWIAPECVEDSKNLSIAADKWSFGTTL  199 (262)
T ss_pred             eECCCCCcccEEEecCCccCCCCceeEeCCCCCCccccCc------ccccccccccChhhhcCCCCCCchhHHHHHHHHH
Confidence            999999999999986653       899999988654221      2234578899999886 46688999999999999


Q ss_pred             HHHH-cCCCCCcchh
Q 044746          174 FEVV-GRRRNLEKEI  187 (202)
Q Consensus       174 ~el~-~g~~p~~~~~  187 (202)
                      |||+ +|+.||....
T Consensus       200 ~el~~~~~~p~~~~~  214 (262)
T cd05077         200 WEICYNGEIPLKDKT  214 (262)
T ss_pred             HHHHhCCCCCCCCcc
Confidence            9997 6888887544

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.94  E-value=1.9e-26  Score=179.55  Aligned_cols=149  Identities=19%  Similarity=0.225  Sum_probs=119.2

Q ss_pred             cCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCe
Q 044746           31 RFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN--ILGFGQLREIEVSTSKGIAYLHEECRQKI  102 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~i  102 (202)
                      .+..+.......+|++++.      .+....++++++.+|+|..++...  .+++..+..++.|++.||.|||+   +++
T Consensus        45 ~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i  121 (258)
T cd05078          45 SFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEYVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLED---KGL  121 (258)
T ss_pred             HHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEecCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH---CCe
Confidence            4566666777778887763      335566899999999999988643  48999999999999999999999   999


Q ss_pred             EEecCCCCcEEEcCCCc--------eEEeeeecceeccccCcccccCCCCCCCcccCCcccCC-CCCCchhhHHHHHHHH
Q 044746          103 VHYDIKPESVLLDENFF--------PKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMP-YSVTQKCDVFSFGMLL  173 (202)
Q Consensus       103 iHrdlk~~nil~~~~~~--------~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~-~~~~~~~Diws~G~~l  173 (202)
                      +||||||+||+++.++.        ++++|||++......      ....+++.|+|||++.+ ..++.++|+||+|+++
T Consensus       122 iH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l  195 (258)
T cd05078         122 THGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPK------EILLERIPWVPPECIENPQNLSLAADKWSFGTTL  195 (258)
T ss_pred             ecCCCccceEEEecccccccCCCceEEecccccccccCCc------hhccccCCccCchhccCCCCCCchhhHHHHHHHH
Confidence            99999999999987654        689999988643221      12345788999999876 3578899999999999


Q ss_pred             HHHHcC-CCCCcchhc
Q 044746          174 FEVVGR-RRNLEKEIS  188 (202)
Q Consensus       174 ~el~~g-~~p~~~~~~  188 (202)
                      ||+++| .+|+....+
T Consensus       196 ~~l~~g~~~~~~~~~~  211 (258)
T cd05078         196 WEIFSGGDKPLSALDS  211 (258)
T ss_pred             HHHHcCCCCChhhccH
Confidence            999998 466655443

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.94  E-value=1.3e-26  Score=184.97  Aligned_cols=177  Identities=24%  Similarity=0.237  Sum_probs=133.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc------cccceEEEEEccCCchhhhh--cc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS------EDTETYIKGFLAMGPFYLLC--KK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~~~~~~~~~~~~~~~l~~~~--~~   72 (202)
                      ||++.+..+++.|+.|..........+....+..|.......+|++++..      .....++++++. |++..+.  ..
T Consensus        31 vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-g~l~~~~~~~~  109 (307)
T cd06607          31 VYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVMEYCL-GSASDILEVHK  109 (307)
T ss_pred             EEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEHHhhC-CCHHHHHHHcc
Confidence            57777777777777765433322222233446666667777889987642      233456677766 4554444  24


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++......      ....+++.|+||
T Consensus       110 ~~l~~~~~~~~~~ql~~~L~~LH~---~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~------~~~~~~~~y~aP  180 (307)
T cd06607         110 KPLQEVEIAAICHGALQGLAYLHS---HERIHRDIKAGNILLTEPGTVKLADFGSASLVSPA------NSFVGTPYWMAP  180 (307)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcccEEECCCCCEEEeecCcceecCCC------CCccCCccccCc
Confidence            569999999999999999999999   99999999999999999999999999998754321      223568899999


Q ss_pred             cccC---CCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWM---PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~---~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |++.   ...++.++|+||||+++||+++|++||....
T Consensus       181 E~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~  218 (307)
T cd06607         181 EVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  218 (307)
T ss_pred             eeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCcc
Confidence            9874   3568889999999999999999999997644

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.94  E-value=1.4e-26  Score=180.32  Aligned_cols=182  Identities=23%  Similarity=0.289  Sum_probs=141.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++.+..+++.++.|+.+..... ......+..|.......+|++++.      ......+++++..+++|.++...+ 
T Consensus        16 v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~   94 (264)
T cd06626          16 VYTAVNLDTGELMAVKEIRIQDND-PKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYCSGGTLEELLEHGR   94 (264)
T ss_pred             EEEEEECCCCcEEEEEEEECcccc-hHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEecCCCCcHHHHHhhcC
Confidence            467777667777777765433222 223445666766777778887653      334566888999999999988664 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccc--cCCCCCCCcccC
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT--STGRRRTPGCEA  151 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~--~~~~~gt~~y~a  151 (202)
                      .+++..+..++.+++.|+.|||+   .+++|+||+|+||+++.++.++|+|||++...........  .....+++.|+|
T Consensus        95 ~~~~~~~~~i~~~i~~~l~~lh~---~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (264)
T cd06626          95 ILDEHVIRVYTLQLLEGLAYLHS---HGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMA  171 (264)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcCccC
Confidence            48899999999999999999999   9999999999999999999999999999986543322111  113456889999


Q ss_pred             CcccCCCC---CCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          152 PELWMPYS---VTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       152 Pe~~~~~~---~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      ||++.+..   .+.++|+||||++++++++|+.||...
T Consensus       172 PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~  209 (264)
T cd06626         172 PEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSEL  209 (264)
T ss_pred             hhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCC
Confidence            99998765   889999999999999999999999754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.94  E-value=1.9e-26  Score=179.69  Aligned_cols=178  Identities=22%  Similarity=0.322  Sum_probs=134.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc-----cccceEEEEEccCCchhhhhcc---
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS-----EDTETYIKGFLAMGPFYLLCKK---   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~~~~~~~l~~~~~~---   72 (202)
                      ||++....+..++.+.+.....     ....+..|.......+|++++..     .....++++++.+++|.+++..   
T Consensus        22 vy~~~~~~~~~~~iK~~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~   96 (260)
T cd05073          22 VWMATYNKHTKVAVKTMKPGSM-----SVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAKGSLLDFLKSDEG   96 (260)
T ss_pred             EEEEEecCCccEEEEecCCChh-----HHHHHHHHHHHHHhcCCCCcceEEEEEcCCCeEEEEEeCCCCcHHHHHHhCCc
Confidence            5677655555544443332111     12345566666777788876632     2445688889999999888854   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++......... ......++..|+||
T Consensus        97 ~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~-~~~~~~~~~~y~~P  172 (260)
T cd05073          97 SKQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYT-AREGAKFPIKWTAP  172 (260)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHh---CCccccccCcceEEEcCCCcEEECCCcceeeccCCCcc-cccCCcccccccCH
Confidence            347889999999999999999999   99999999999999999999999999998765432211 11223346779999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      |++....++.++|+||+|++++++++ |+.||....
T Consensus       173 E~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~  208 (260)
T cd05073         173 EAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMS  208 (260)
T ss_pred             hHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCC
Confidence            99988888999999999999999998 999997654

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.94  E-value=2.3e-26  Score=183.59  Aligned_cols=181  Identities=22%  Similarity=0.279  Sum_probs=135.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++.+...++.|+.|..+.... .......+..|.......+|++++..        .+...++++++.+ +|..++..
T Consensus        23 v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~  100 (309)
T cd07845          23 VYRARDTTSGEIVALKKVRMDNE-RDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFLVMEYCEQ-DLASLLDN  100 (309)
T ss_pred             EEEEEECCCCcEEEEEEEEeccC-CCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEEEEecCCC-CHHHHHHh
Confidence            57888887778888776443221 11222334456667777788876531        1334677777764 56555543


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           73 --NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        73 --~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                        ..+++.++..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.........  .....+++.|+
T Consensus       101 ~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~~--~~~~~~~~~y~  175 (309)
T cd07845         101 MPTPFSESQVKCLMLQLLRGLQYLHE---NFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKP--MTPKVVTLWYR  175 (309)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEECccceeeecCCccCC--CCccccccccc
Confidence              568999999999999999999999   99999999999999999999999999999865432211  12223477899


Q ss_pred             CCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          151 APELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |||.+.+ ..++.++|+||+|+++|||++|++||....+
T Consensus       176 aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~  214 (309)
T cd07845         176 APELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSE  214 (309)
T ss_pred             ChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            9999865 4578999999999999999999999975543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.94  E-value=1.3e-26  Score=181.81  Aligned_cols=184  Identities=17%  Similarity=0.282  Sum_probs=142.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcc-cccccc------ccccceEEEEEccCCchhhhhccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADN-FSNLVG------SEDTETYIKGFLAMGPFYLLCKKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~   73 (202)
                      ||++.++.+++.++.|+..............+..+.......+ |++++.      ..+...++++++++++|..++...
T Consensus        17 vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~   96 (280)
T cd05581          17 VVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVLEYAPNGELLQYIRKY   96 (280)
T ss_pred             EEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEEcCCCCCcHHHHHHHc
Confidence            5788888788888887755432222222234555555555555 887652      344566888899999998888665


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc---------------
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH---------------  137 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~---------------  137 (202)
                       .+++..+..++.|++.||.|||+   .+++|+|++|+||+++.++.++++|||++.........               
T Consensus        97 ~~l~~~~~~~i~~ql~~~l~~Lh~---~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (280)
T cd05581          97 GSLDEKCTRFYAAEILLALEYLHS---KGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIE  173 (280)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEecCCccccccCCccccccCCCCCcccccccc
Confidence             79999999999999999999999   99999999999999999999999999998865432211               


Q ss_pred             ---cccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          138 ---ITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       138 ---~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                         .......++..|+|||......++.++|+||+|++++++++|+.||....
T Consensus       174 ~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~  226 (280)
T cd05581         174 KNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSN  226 (280)
T ss_pred             ccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCcc
Confidence               11223456789999999888888999999999999999999999998654

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.94  E-value=3.3e-26  Score=180.22  Aligned_cols=180  Identities=23%  Similarity=0.290  Sum_probs=135.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++.+..++..++.|...... ........+..|.......+|++++.      .++...++++++. ++|..++... 
T Consensus        15 vy~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~~-~~l~~~~~~~~   92 (283)
T cd07835          15 VYKARDKLTGEIVALKKIRLET-EDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFLD-LDLKKYMDSSP   92 (283)
T ss_pred             EEEEEEcCCCCEEEEEEeeccc-ccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEeccC-cCHHHHHhhCC
Confidence            5788877667777766543221 11122234555666677777887652      3455667788875 6787776544 


Q ss_pred             --CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           74 --ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        74 --~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                        .+++..+..++.|++.||.|||+   ++++|+||+|+||+++.++.++|+|||++........  ......+++.|+|
T Consensus        93 ~~~~~~~~~~~~~~~i~~~L~~lH~---~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~--~~~~~~~~~~~~a  167 (283)
T cd07835          93 LTGLDPPLIKSYLYQLLQGIAYCHS---HRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVR--TYTHEVVTLWYRA  167 (283)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCHHHEEEcCCCcEEEeecccccccCCCcc--ccCccccccCCCC
Confidence              58999999999999999999999   9999999999999999999999999999875432211  1122345788999


Q ss_pred             CcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          152 PELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       152 Pe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ||++.+. .++.++|+||+|+++|+|++|++||....
T Consensus       168 PE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~  204 (283)
T cd07835         168 PEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDS  204 (283)
T ss_pred             CceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            9987654 57889999999999999999999997544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.94  E-value=1.1e-26  Score=182.60  Aligned_cols=181  Identities=19%  Similarity=0.259  Sum_probs=137.4

Q ss_pred             CCcccc----CCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhh
Q 044746            1 MEKPRN----RGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~   68 (202)
                      ||+++.    ...+..++.|+.+.....  .....|..|.......+|++++..        +....++++++++++|..
T Consensus        20 v~~~~~~~~~~~~~~~~avK~~~~~~~~--~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~   97 (284)
T cd05038          20 VELCRYDPLGDNTGEQVAVKSLNHSGEE--QHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRD   97 (284)
T ss_pred             EEEeeecCCCCCCceEEEEEEeccccch--HHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceEEEEecCCCCCHHH
Confidence            455553    233556666654332221  223456667666777788876532        334668889999999999


Q ss_pred             hhccCC--CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccc-cCCCCC
Q 044746           69 LCKKNI--LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT-STGRRR  145 (202)
Q Consensus        69 ~~~~~~--~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~-~~~~~g  145 (202)
                      ++....  +++..+..++.|++.||.|||+   ++++|+||||+||+++.++.++++|||++........... .....+
T Consensus        98 ~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~  174 (284)
T cd05038          98 YLQRHRDQINLKRLLLFSSQICKGMDYLGS---QRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGES  174 (284)
T ss_pred             HHHhCccccCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHhEEEcCCCCEEEcccccccccccCCcceeccCCCCC
Confidence            887655  9999999999999999999999   9999999999999999999999999999987653222111 112234


Q ss_pred             CCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          146 TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       146 t~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      +..|++||.+....++.++|+||||++++||++|..|+...
T Consensus       175 ~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~  215 (284)
T cd05038         175 PIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSP  215 (284)
T ss_pred             cccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccc
Confidence            56799999998888999999999999999999999998654

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.94  E-value=1.7e-26  Score=186.32  Aligned_cols=182  Identities=19%  Similarity=0.236  Sum_probs=128.0

Q ss_pred             CCccccCCC--cceeehhhhchhhhhccCCcccCCcHHHHHHhc-cccccccccc----------cceEEEEEccCCchh
Q 044746            1 MEKPRNRGS--TRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVGSED----------TETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~----------~~~~~~~~~~~~~l~   67 (202)
                      ||++++...  +..++.|..+..... ......+..|....... +|++++...+          ...++++++. ++|.
T Consensus        16 vy~~~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~e~~~-~~L~   93 (332)
T cd07857          16 VCSARNAETSEEETVAIKKITNVFSK-KILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNELYLYEELME-ADLH   93 (332)
T ss_pred             EEEEEeCCCCcCceEEEEEecccccc-chhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcEEEEEeccc-CCHH
Confidence            567777665  666666653322111 11122333344444333 5777653221          1234455554 5676


Q ss_pred             hhh-ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc--cccCCCC
Q 044746           68 LLC-KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH--ITSTGRR  144 (202)
Q Consensus        68 ~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~--~~~~~~~  144 (202)
                      ..+ ....+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++........  .......
T Consensus        94 ~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~---~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~  170 (332)
T cd07857          94 QIIRSGQPLTDAHFQSFIYQILCGLKYIHS---ANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYV  170 (332)
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHeEEcCCCCEEeCcCCCceecccccccccccccCcc
Confidence            665 44568999999999999999999999   99999999999999999999999999999865432211  1122346


Q ss_pred             CCCcccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          145 RTPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       145 gt~~y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |++.|+|||.+.+ ..++.++|+||+|++++++++|++||....
T Consensus       171 g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~  214 (332)
T cd07857         171 ATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKD  214 (332)
T ss_pred             cCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCC
Confidence            7899999998765 468899999999999999999999997643

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.94  E-value=3.5e-26  Score=178.86  Aligned_cols=178  Identities=19%  Similarity=0.167  Sum_probs=135.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..++..++.|........   ....+..|.......+|++++.      .++...++++++.+++|..++..  
T Consensus        24 v~~~~~~~~~~~v~~k~~~~~~~~---~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  100 (268)
T cd06624          24 VYAARDLSTQVRIAIKEIPERDSR---YVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIFMEQVPGGSLSALLRSKW  100 (268)
T ss_pred             EEEeEecCCCcEEEEEEecCCCHH---HHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEEEecCCCCCHHHHHHHhc
Confidence            578887777777777653322111   2234566666777778887663      33456688889999999988754  


Q ss_pred             CCC--CHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC-CCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           73 NIL--GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE-NFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        73 ~~~--~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                      ..+  +...+..++.|++.||.|||+   .+++||||||+||+++. ++.++|+|||++........  ......|++.|
T Consensus       101 ~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~  175 (268)
T cd06624         101 GPLKDNEQTIIFYTKQILEGLKYLHD---NQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINP--CTETFTGTLQY  175 (268)
T ss_pred             ccCCCcHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCeEEEecchhheecccCCC--ccccCCCCccc
Confidence            345  788899999999999999999   99999999999999976 67999999999876532221  11223468899


Q ss_pred             cCCcccCCC--CCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          150 EAPELWMPY--SVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       150 ~aPe~~~~~--~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      +|||++...  .++.++|+||+|++++++++|++||...
T Consensus       176 ~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~  214 (268)
T cd06624         176 MAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIEL  214 (268)
T ss_pred             cChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccc
Confidence            999998654  3788999999999999999999999653

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.94  E-value=2.8e-26  Score=183.88  Aligned_cols=177  Identities=23%  Similarity=0.228  Sum_probs=134.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh--cc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC--KK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~--~~   72 (202)
                      ||++++..++..++.|..........+....+..|.......+|++++.      ......++++++.+ ++....  ..
T Consensus        41 v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~g-~l~~~~~~~~  119 (317)
T cd06635          41 VYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYCLG-SASDLLEVHK  119 (317)
T ss_pred             EEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeCCCC-CHHHHHHHhc
Confidence            5777777777777777644332222223334556666667778887663      33445678888864 555554  34


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++.++..++.|++.|+.|||+   .+++|+||+|+||+++.++.++|+|||++......      ....|++.|+||
T Consensus       120 ~~l~~~~~~~i~~~i~~~l~~lH~---~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~------~~~~~~~~y~aP  190 (317)
T cd06635         120 KPLQEVEIAAITHGALQGLAYLHS---HNMIHRDIKAGNILLTEPGQVKLADFGSASIASPA------NSFVGTPYWMAP  190 (317)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcccEEECCCCCEEEecCCCccccCCc------ccccCCccccCh
Confidence            568999999999999999999999   99999999999999999999999999988654321      223568899999


Q ss_pred             cccC---CCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWM---PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~---~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |++.   ...++.++|+||+|++++||++|++||....
T Consensus       191 E~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~  228 (317)
T cd06635         191 EVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  228 (317)
T ss_pred             hhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCcc
Confidence            9974   4568899999999999999999999987643

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.94  E-value=4e-26  Score=179.89  Aligned_cols=173  Identities=18%  Similarity=0.259  Sum_probs=130.0

Q ss_pred             cCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhhhhcc--CCC
Q 044746            6 NRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYLLCKK--NIL   75 (202)
Q Consensus         6 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~~~~~--~~~   75 (202)
                      +...+..++.|......   ......+..|.......+|++++..        .....++++++++++|..++..  ..+
T Consensus        29 ~~~~~~~v~iK~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l  105 (284)
T cd05081          29 QDNTGEVVAVKKLQHST---AEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERL  105 (284)
T ss_pred             cCCCCcEEEEEEeccCC---HHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceEEEEEecCCCCHHHHHHhcCcCC
Confidence            33445556655533221   1122346667667777888886632        1235688999999999988754  358


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccc-cCCCCCCCcccCCcc
Q 044746           76 GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPEL  154 (202)
Q Consensus        76 ~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~-~~~~~gt~~y~aPe~  154 (202)
                      ++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||++........... .....++..|+|||+
T Consensus       106 ~~~~~~~~~~~l~~aL~~LH~---~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  182 (284)
T cd05081         106 DHRKLLLYASQICKGMEYLGS---KRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPES  182 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH---CCceeccCCHhhEEECCCCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHH
Confidence            999999999999999999999   9999999999999999999999999999986543322111 111223456999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCc
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLE  184 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~  184 (202)
                      +.+..++.++|+||+|++++||++|..|+.
T Consensus       183 ~~~~~~~~~~Di~slG~~l~el~~~~~~~~  212 (284)
T cd05081         183 LTESKFSVASDVWSFGVVLYELFTYSDKSC  212 (284)
T ss_pred             hccCCcChHHHHHHHHHHHHHHhhcCCcCC
Confidence            988889999999999999999999877654

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.94  E-value=4.6e-26  Score=175.99  Aligned_cols=182  Identities=21%  Similarity=0.285  Sum_probs=142.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc------cccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV------GSEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++.+...++.++.|+..............+..|.......+|++++      ..+....++++++.+++|..++... 
T Consensus         9 v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~   88 (250)
T cd05123           9 VLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGELFSHLSKEG   88 (250)
T ss_pred             EEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcHHHHHHhcC
Confidence            467777766677776654443322222334566666666677788765      3455667888999999998888655 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.....++.|++.|+.|+|+   .+++|+||+|+||+++.++.++++|||++.......  .......++..|++||
T Consensus        89 ~l~~~~~~~~~~qi~~~l~~lh~---~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~--~~~~~~~~~~~~~~Pe  163 (250)
T cd05123          89 RFSEERARFYAAEIVLALEYLHS---LGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEG--SRTNTFCGTPEYLAPE  163 (250)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcceEEEcCCCcEEEeecCcceecccCC--CcccCCcCCccccChH
Confidence            68999999999999999999999   999999999999999999999999999987654321  1123345688999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ...+...+.++|+||+|++++++++|+.||....
T Consensus       164 ~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~  197 (250)
T cd05123         164 VLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAED  197 (250)
T ss_pred             HhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCC
Confidence            9988888899999999999999999999997554

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.94  E-value=3.3e-26  Score=177.75  Aligned_cols=174  Identities=22%  Similarity=0.339  Sum_probs=134.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++...  ++.|+.|..+....    ...++..|.......+|++++.      ..+...++++++++++|..++... 
T Consensus        22 v~~~~~~--~~~v~iK~~~~~~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~   95 (256)
T cd05039          22 VMLGDYR--GQKVAVKCLKDDST----AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRG   95 (256)
T ss_pred             EEEEEec--CcEEEEEEeccchh----HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecCCCcHHHHHHhcC
Confidence            4555544  34455544332211    2344666766777778887653      245566889999999999988544 


Q ss_pred             --CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           74 --ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        74 --~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                        .+++.....++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||.++.......     ...++..|+|
T Consensus        96 ~~~~~~~~~~~~~~qi~~~l~~lh~---~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~-----~~~~~~~~~a  167 (256)
T cd05039          96 RAVITLAQQLGFALDVCEGMEYLEE---KNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQD-----SGKLPVKWTA  167 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHh---CCccchhcccceEEEeCCCCEEEcccccccccccccc-----cCCCcccccC
Confidence              58999999999999999999999   9999999999999999999999999999986533222     1223567999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ||.+....++.++|+||+|++++|+++ |+.||.....
T Consensus       168 pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~  205 (256)
T cd05039         168 PEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL  205 (256)
T ss_pred             chhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCH
Confidence            999988888999999999999999997 9999876543

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.94  E-value=1.4e-26  Score=180.42  Aligned_cols=178  Identities=22%  Similarity=0.276  Sum_probs=139.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++.+...++.++.|........  +...++..|.......+|++++.      ......++++++.+++|..++..  
T Consensus        17 v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~   94 (265)
T cd06605          17 VSKVLHRPTGKIMAVKTIRLEINE--AIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYMDGGSLDKILKEVQ   94 (265)
T ss_pred             EEEEEEcCCCcEEEEEEEecccCh--HHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEecCCCcHHHHHHHcc
Confidence            577888877777777654332111  22334555655566667887653      34556788899999999988865  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..++......++.|++.|+.|||+.  .+++|+||||+||+++.++.++|+|||.+.........    ...++..|+||
T Consensus        95 ~~~~~~~~~~~~~~l~~~l~~lH~~--~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~----~~~~~~~y~~P  168 (265)
T cd06605          95 GRIPERILGKIAVAVLKGLTYLHEK--HKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAK----TFVGTSSYMAP  168 (265)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHcCC--CCeecCCCCHHHEEECCCCCEEEeecccchhhHHHHhh----cccCChhccCH
Confidence            5689999999999999999999973  69999999999999999999999999998754322211    14568899999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      |.+.+..++.++|+||+|++++++++|+.||...
T Consensus       169 E~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~  202 (265)
T cd06605         169 ERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPE  202 (265)
T ss_pred             HHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence            9999889999999999999999999999999754

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.94  E-value=2.1e-26  Score=181.81  Aligned_cols=179  Identities=21%  Similarity=0.281  Sum_probs=139.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++.+...+..++.|+.+....    ....+..|.......+|++++.      .....+++++++++++|.+++... 
T Consensus        35 v~~~~~~~~~~~~~iK~~~~~~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  110 (286)
T cd06614          35 VYKATDRATGKEVAIKKMRLRKQ----NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQNF  110 (286)
T ss_pred             EEEEEEccCCcEEEEEEEecCch----hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEeccCCCcHHHHHHHhc
Confidence            46666665555566555432211    2234555656667777887652      345567888999999999998776 


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                       .+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++........  ......++..|+||
T Consensus       111 ~~l~~~~~~~i~~~i~~~L~~lH~---~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~y~~P  185 (286)
T cd06614         111 VRMNEPQIAYVCREVLQGLEYLHS---QNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKS--KRNSVVGTPYWMAP  185 (286)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCChhhEEEcCCCCEEECccchhhhhccchh--hhccccCCcccCCH
Confidence             79999999999999999999999   9999999999999999999999999998865433221  11223467889999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |.+.+..++.++|+||+|++++++++|+.||....+
T Consensus       186 E~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~  221 (286)
T cd06614         186 EVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPP  221 (286)
T ss_pred             hHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCH
Confidence            999888899999999999999999999999876543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.94  E-value=5.9e-26  Score=179.77  Aligned_cols=180  Identities=17%  Similarity=0.217  Sum_probs=130.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccccc------c-----cceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVGSE------D-----TETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~------~-----~~~~~~~~~~~~~l~~   68 (202)
                      ||++++...++.|+.|..+..... ......+..|....... +|++++...      .     ...++++++++ ++..
T Consensus        17 vy~~~~~~~~~~v~lK~~~~~~~~-~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~   94 (295)
T cd07837          17 VYKARDKNTGKLVALKKTRLEMDE-EGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSLYLVFEYLDS-DLKK   94 (295)
T ss_pred             EEEEEECCCCcEEEEEeehhhccc-cCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceEEEEeeccCc-CHHH
Confidence            688888888888887764332211 12223444555445444 456654211      1     14678888875 5665


Q ss_pred             hhc------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC-CCceEEeeeecceeccccCcccccC
Q 044746           69 LCK------KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE-NFFPKAADFGLAKLYNREHTHITST  141 (202)
Q Consensus        69 ~~~------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~-~~~~kl~dfgl~~~~~~~~~~~~~~  141 (202)
                      ++.      ...+++..+..++.|++.||.|||+   ++++||||+|+||+++. ++.++|+|||++........  ...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~---~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~~~~~~--~~~  169 (295)
T cd07837          95 FMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHK---HGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVK--SYT  169 (295)
T ss_pred             HHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChHHEEEecCCCeEEEeecccceecCCCcc--ccC
Confidence            552      2358999999999999999999999   99999999999999998 88999999999875432211  112


Q ss_pred             CCCCCCcccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          142 GRRRTPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       142 ~~~gt~~y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ...+++.|+|||.+.+ ..++.++|+||+|+++++|++|.+||....
T Consensus       170 ~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~  216 (295)
T cd07837         170 HEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDS  216 (295)
T ss_pred             CcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            2345788999998865 457899999999999999999999997643

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.94  E-value=3.5e-26  Score=180.04  Aligned_cols=180  Identities=20%  Similarity=0.283  Sum_probs=134.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..++..++.|..+....  ......+..|.......+|++++.      ..+...++++++++ ++..+...  
T Consensus        16 v~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~   92 (284)
T cd07836          16 VYKGRNRTTGEIVALKEIHLDAE--EGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYMDK-DLKKYMDTHG   92 (284)
T ss_pred             EEEEEECCCCeEEEEEEeccccc--ccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecCCc-cHHHHHHhcC
Confidence            57888887777777775443221  111223444555666667887653      33445688888875 66666533  


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           73 --NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        73 --~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                        ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++++|||++........  ......++..|+
T Consensus        93 ~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~y~  167 (284)
T cd07836          93 VRGALDPNTVKSFTYQLLKGIAFCHE---NRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVN--TFSNEVVTLWYR  167 (284)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCcc--cccccccccccc
Confidence              358999999999999999999999   9999999999999999999999999999875433211  112234578899


Q ss_pred             CCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          151 APELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +||++.+. .++.++|+||+|++++++++|++||.....
T Consensus       168 ~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~  206 (284)
T cd07836         168 APDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNN  206 (284)
T ss_pred             ChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCc
Confidence            99988664 468899999999999999999999986543

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.94  E-value=4e-26  Score=179.60  Aligned_cols=182  Identities=21%  Similarity=0.285  Sum_probs=136.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------cc--ccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SE--DTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~--~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++++...++.++.|..+... ........+..|.......+|++++.      ..  +...++++++.+ +|..+...
T Consensus        15 vy~~~~~~~~~~~~~K~~~~~~-~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~   92 (287)
T cd07840          15 VYKARNKKTGELVALKKIRMEN-EKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFEYMDH-DLTGLLDS   92 (287)
T ss_pred             EEEEEECCCCeEEEEEEEeccc-ccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEeccccc-cHHHHHhc
Confidence            6788888777777776654432 11122233555655666667787552      22  556688888874 77776654


Q ss_pred             C--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           73 N--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        73 ~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      .  .+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++++|||++......... ......++..|+
T Consensus        93 ~~~~~~~~~~~~i~~~i~~al~~LH~---~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~-~~~~~~~~~~y~  168 (287)
T cd07840          93 PEVKFTESQIKCYMKQLLEGLQYLHS---NGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSA-DYTNRVITLWYR  168 (287)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCcHHHeEEcCCCCEEEccccceeeccCCCcc-cccccccccccC
Confidence            3  69999999999999999999999   99999999999999999999999999999865443211 122334578899


Q ss_pred             CCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          151 APELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |||.+.+ ..++.++|+||||++++|+++|+.||.....
T Consensus       169 ~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~  207 (287)
T cd07840         169 PPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTE  207 (287)
T ss_pred             CceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCCh
Confidence            9998765 4578999999999999999999999976543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.94  E-value=3.1e-26  Score=177.53  Aligned_cols=180  Identities=19%  Similarity=0.310  Sum_probs=139.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++.+..+++.++.|...... ........+..|.......+|++++.      ..+...++++++++++|..++..  
T Consensus        16 v~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~   94 (256)
T cd08220          16 VHLCRRKADQKLVIIKQIPVEQ-MTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRC   94 (256)
T ss_pred             EEEEEEcCCCcEEEEEEEeccc-cccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEecCCCCCHHHHHHHhc
Confidence            4677777777777766543221 12222345666666777778887653      34456788899999999988854  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC-CceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN-FFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~-~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                       ..+++..+..++.+++.|+.|||+   ++++|+||+|+||+++.+ +.++++|||++........   .....++..|+
T Consensus        95 ~~~~~~~~~~~~~~~i~~~l~~lh~---~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~---~~~~~~~~~y~  168 (256)
T cd08220          95 NSLLDEDTILHFFVQILLALHHVHT---KLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSK---AYTVVGTPCYI  168 (256)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCcc---ccccccCCccc
Confidence             248999999999999999999999   999999999999999854 5689999999986543322   12245688999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |||.+.+..++.++|+||+|++++++++|+.||....
T Consensus       169 aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~  205 (256)
T cd08220         169 SPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAAN  205 (256)
T ss_pred             CchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCc
Confidence            9999988888999999999999999999999997643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.94  E-value=5.7e-27  Score=171.40  Aligned_cols=179  Identities=20%  Similarity=0.217  Sum_probs=123.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh----
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC----   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~----   70 (202)
                      |.|-|+..++.+.|+|--+..-. +++..+.+..-.+...+..-|-++.      ..+-.+..++.|. .+|..+.    
T Consensus        62 vekmrh~~sg~imAvKri~~tvn-~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME~M~-tSldkfy~~v~  139 (282)
T KOG0984|consen   62 VEKMRHIQSGTIMAVKRIRATVN-SQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICMELMD-TSLDKFYRKVL  139 (282)
T ss_pred             hhheeeccCCeEEEEeeehhhcC-hHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHHHhh-hhHHHHHHHHH
Confidence            34566777777777654322211 1222222333333444444443332      1122233444433 3443333    


Q ss_pred             -ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           71 -KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        71 -~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                       +...+++.-.-+++..+..||.|||+  +..+||||+||.|||++.+|.+|++|||.+-.+.+..-   .+...|...|
T Consensus       140 ~~g~~ipE~vlGkIa~Svv~al~~L~~--kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiA---kt~daGCkpY  214 (282)
T KOG0984|consen  140 KKGGTIPEDVLGKIAVSVVHALEFLHS--KLSVIHRDVKPSNILINYDGQVKICDFGISGYLVDSIA---KTMDAGCKPY  214 (282)
T ss_pred             hcCCcCchHHhhHhHHHHHHHHHHHHH--HhhhhhccCCcceEEEccCCcEEEcccccceeehhhhH---HHHhcCCCcc
Confidence             45679999999999999999999999  48999999999999999999999999999987654332   1224568899


Q ss_pred             cCCcccCC----CCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          150 EAPELWMP----YSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       150 ~aPe~~~~----~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      ||||.+..    ..|+.++||||+|+++.||.+++.|++.-
T Consensus       215 maPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w  255 (282)
T KOG0984|consen  215 MAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESW  255 (282)
T ss_pred             CChhhcCcccCcccceeehhhhhhhhhhhhhhhcccccccc
Confidence            99999864    36999999999999999999999998743

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.94  E-value=1.3e-27  Score=194.98  Aligned_cols=181  Identities=18%  Similarity=0.245  Sum_probs=150.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc------cccccceEEEEEccCCchhhhh--cc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV------GSEDTETYIKGFLAMGPFYLLC--KK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~~~~~~~l~~~~--~~   72 (202)
                      ||-+.++.+++-||+|+-.++.-. ..+...+..|..++...+||-++      ...+-.+++++.+.+.-|..++  .+
T Consensus       580 VYgg~hRktGrdVAvKvIdKlrFp-~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~GDMLEMILSsEk  658 (888)
T KOG4236|consen  580 VYGGKHRKTGRDVAVKVIDKLRFP-TKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHGDMLEMILSSEK  658 (888)
T ss_pred             eecceecccCceeeeeeeecccCC-CchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcchHHHHHHHhhc
Confidence            678889999999999987665432 23335677888888999999765      3455567888988887777776  45


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC---CceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN---FFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~---~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                      +++++...+.+..||+.||+|||.   ++|+|+||||+|+|+...   -.+||+|||.|+.++.....   ....|||.|
T Consensus       659 gRL~er~TkFlvtQIL~ALr~LH~---knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksFR---rsVVGTPAY  732 (888)
T KOG4236|consen  659 GRLPERITKFLVTQILVALRYLHF---KNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSFR---RSVVGTPAY  732 (888)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhhh---cceeeccCCchheeeccCCCCCceeeccccceeecchhhhh---hhhcCCccc
Confidence            679999999999999999999999   999999999999999643   46899999999988654432   446789999


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +|||++....|+..-|+||.|+++|--++|..||..+.+
T Consensus       733 LaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEd  771 (888)
T KOG4236|consen  733 LAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDED  771 (888)
T ss_pred             cCHHHHhhccccccccceeeeEEEEEEecccccCCCccc
Confidence            999999999999999999999999999999999975544

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.94  E-value=3.5e-26  Score=182.13  Aligned_cols=183  Identities=23%  Similarity=0.277  Sum_probs=131.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc--------------ccceEEEEEccCCch
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE--------------DTETYIKGFLAMGPF   66 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------------~~~~~~~~~~~~~~l   66 (202)
                      ||++.+..+++.++.|........ ......+..|.......+|++++...              ....++++++.. ++
T Consensus        24 v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~-~l  101 (311)
T cd07866          24 VYKARQIKTGRVVALKKILMHNEK-DGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMDH-DL  101 (311)
T ss_pred             EEEEEECCCCcEEEEEEEEeccCC-CCcchhHHHHHHHHHhcCCCCccchhhheecccccccccCceEEEEEecCCc-CH
Confidence            578888777666766654322111 11122344566667777888776422              123566666654 45


Q ss_pred             hhhhc--cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc-------
Q 044746           67 YLLCK--KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-------  137 (202)
Q Consensus        67 ~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~-------  137 (202)
                      .....  ...+++..+..++.|+++||.|||+   .+++|+||||+||+++.++.++|+|||++.........       
T Consensus       102 ~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~  178 (311)
T cd07866         102 SGLLENPSVKLTESQIKCYMLQLLEGINYLHE---NHILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGG  178 (311)
T ss_pred             HHHHhccccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEECcCccchhccCCCcccccCCcc
Confidence            44443  3469999999999999999999999   99999999999999999999999999999754322111       


Q ss_pred             --cccCCCCCCCcccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          138 --ITSTGRRRTPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       138 --~~~~~~~gt~~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                        .......+++.|+|||.+.+. .++.++|+||+|++++||++|++||.+..+
T Consensus       179 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~  232 (311)
T cd07866         179 GTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSD  232 (311)
T ss_pred             cccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCH
Confidence              111223457889999987654 578899999999999999999999976543

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.94  E-value=4.8e-26  Score=180.40  Aligned_cols=180  Identities=22%  Similarity=0.285  Sum_probs=131.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.++.|..+.... .......+..|.......+|++++.      .+....++++++.+ ++...... .
T Consensus        18 v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~   95 (294)
T PLN00009         18 VYKARDRVTNETIALKKIRLEQE-DEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDL-DLKKHMDSSP   95 (294)
T ss_pred             EEEEEecCCCcEEEEEehhhccc-cccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEecccc-cHHHHHHhCC
Confidence            57788877777677665433221 1122334556666777778887753      33456678888864 56555532 2


Q ss_pred             --CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC-CCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 --ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE-NFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 --~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                        .+++..+..++.|++.||.|||+   ++++|+||+|+||+++. ++.+|++|||++........  ......+++.|+
T Consensus        96 ~~~~~~~~~~~~~~qi~~aL~~LH~---~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~  170 (294)
T PLN00009         96 DFAKNPRLIKTYLYQILRGIAYCHS---HRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVR--TFTHEVVTLWYR  170 (294)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCcceEEEECCCCEEEEcccccccccCCCcc--ccccCceeeccc
Confidence              35788889999999999999999   99999999999999985 56789999999975433211  112335578999


Q ss_pred             CCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          151 APELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       151 aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |||++.+ ..++.++|+||+|+++++|+||++||....
T Consensus       171 ~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~  208 (294)
T PLN00009        171 APEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDS  208 (294)
T ss_pred             CHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            9998865 457899999999999999999999997654

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.93  E-value=3.8e-26  Score=180.57  Aligned_cols=177  Identities=23%  Similarity=0.237  Sum_probs=139.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhhhhc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYLLCK-   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~~~~-   71 (202)
                      ||++.+...++.++.|.......  .....++..|.......+|++++..        .+...++++++++++|..++. 
T Consensus        17 v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~   94 (287)
T cd06621          17 VTKCRLKNTGMIFALKTITTDPN--PDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKK   94 (287)
T ss_pred             EEEEEECCCCeEEEEEEEecCCc--hHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEEecCCCCHHHHHHH
Confidence            57778877777777776443211  1223446667667777788887632        223467889999999977653 


Q ss_pred             ----cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCC
Q 044746           72 ----KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP  147 (202)
Q Consensus        72 ----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~  147 (202)
                          ...++...+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++........    ....++.
T Consensus        95 ~~~~~~~l~~~~~~~i~~~i~~~L~~lH~---~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~  167 (287)
T cd06621          95 VKKRGGRIGEKVLGKIAESVLKGLSYLHS---RKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLA----GTFTGTS  167 (287)
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEecCCeEEEeecccccccccccc----ccccCCc
Confidence                3458999999999999999999999   9999999999999999999999999999875432211    1234578


Q ss_pred             cccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          148 GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       148 ~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      .|+|||.+.+..++.++|+||+|+++|+|++|+.||...
T Consensus       168 ~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  206 (287)
T cd06621         168 FYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPE  206 (287)
T ss_pred             cccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence            899999998888999999999999999999999999866

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.93  E-value=1.7e-26  Score=181.75  Aligned_cols=177  Identities=20%  Similarity=0.235  Sum_probs=129.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc---
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK---   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~---   71 (202)
                      ||++++..++..||.|..+...... .....+..........+|++++.      ..+...+++++++ ++|..+..   
T Consensus        17 v~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~   94 (283)
T cd06617          17 VDKMRHVPTGTIMAVKRIRATVNSQ-EQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICMEVMD-TSLDKFYKKVY   94 (283)
T ss_pred             EEEEEEcCCCcEEEEEEEecCCCcH-HHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhhhhc-ccHHHHHHHhc
Confidence            6888888888888877543321111 11112223333455667887763      3344567777776 55554442   


Q ss_pred             --cCCCCHHHHHHHHHHHHHHHHHHHhCCCC-CeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           72 --KNILGFGQLREIEVSTSKGIAYLHEECRQ-KIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        72 --~~~~~~~~~~~~~~~i~~~l~~lH~~~~~-~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                        ...+++..+..++.|++.||.|||+   + +++||||||+||+++.++.++|+|||++........   .....++..
T Consensus        95 ~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~  168 (283)
T cd06617          95 DKGLTIPEDILGKIAVSIVKALEYLHS---KLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVA---KTIDAGCKP  168 (283)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHhh---cCCeecCCCCHHHEEECCCCCEEEeecccccccccccc---cccccCCcc
Confidence              2458999999999999999999998   6 999999999999999999999999999876533211   122356888


Q ss_pred             ccCCcccCC----CCCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          149 CEAPELWMP----YSVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       149 y~aPe~~~~----~~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      |+|||.+.+    ..++.++|+||+|+++++|++|+.||..
T Consensus       169 y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~  209 (283)
T cd06617         169 YMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDS  209 (283)
T ss_pred             ccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCc
Confidence            999998864    4568899999999999999999999964

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.93  E-value=6.4e-27  Score=168.19  Aligned_cols=184  Identities=20%  Similarity=0.244  Sum_probs=142.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc--c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK--K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~--~   72 (202)
                      |||+|++.+.++||.|-.+-.+.. ...+..-..|..++....|.|++.      +..-.+++.+++.. .|..+..  .
T Consensus        18 vfkarn~~t~eivalkrvrldddd-egvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~cdq-dlkkyfdsln   95 (292)
T KOG0662|consen   18 VFKARNRETHEIVALKRVRLDDDD-EGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-DLKKYFDSLN   95 (292)
T ss_pred             eEecccCCccceEEEEEEeccCCC-CCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHHhhH-HHHHHHHhcC
Confidence            789999999999998765433322 233445567778888888888774      33344566666543 3333322  3


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      +.+..+.++.++.|+++||.|+|+   ++++||||||+|.++..+|..|++|||+++.++-+..+..  ...-|..|.+|
T Consensus        96 g~~d~~~~rsfmlqllrgl~fchs---hnvlhrdlkpqnllin~ngelkladfglarafgipvrcys--aevvtlwyrpp  170 (292)
T KOG0662|consen   96 GDLDPEIVRSFMLQLLRGLGFCHS---HNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYS--AEVVTLWYRPP  170 (292)
T ss_pred             CcCCHHHHHHHHHHHHhhhhhhhh---hhhhhccCCcceEEeccCCcEEecccchhhhcCCceEeee--ceeeeeeccCc
Confidence            458899999999999999999999   9999999999999999999999999999998765543332  23348899999


Q ss_pred             cccCCC-CCCchhhHHHHHHHHHHHHc-CCCCCcchhcccc
Q 044746          153 ELWMPY-SVTQKCDVFSFGMLLFEVVG-RRRNLEKEISEGQ  191 (202)
Q Consensus       153 e~~~~~-~~~~~~Diws~G~~l~el~~-g~~p~~~~~~~~~  191 (202)
                      .++.+. -|++..|+||.||++.|+.. |++.|.+.+.++|
T Consensus       171 dvlfgakly~tsidmwsagcifaelanagrplfpg~dvddq  211 (292)
T KOG0662|consen  171 DVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQ  211 (292)
T ss_pred             ceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHH
Confidence            998874 68999999999999999986 8888887776654

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.93  E-value=5.8e-26  Score=183.24  Aligned_cols=184  Identities=20%  Similarity=0.246  Sum_probs=135.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccC-----------CcccCCcHHHHHHhcccccccc------ccccceEEEEEccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMD-----------KPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAM   63 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~   63 (202)
                      ||++++...++.++.|..+........           ....+..|.......+|++++.      .+....++++++. 
T Consensus        25 vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-  103 (335)
T PTZ00024         25 VEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGDFINLVMDIMA-  103 (335)
T ss_pred             EEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCCcEEEEEeccc-
Confidence            688888777777777764432221100           0112445666677778887653      3445567788876 


Q ss_pred             Cchhhhhc-cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccC-------
Q 044746           64 GPFYLLCK-KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH-------  135 (202)
Q Consensus        64 ~~l~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~-------  135 (202)
                      ++|..++. ...++......++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++.......       
T Consensus       104 ~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~---~~i~H~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~  180 (335)
T PTZ00024        104 SDLKKVVDRKIRLTESQVKCILLQILNGLNVLHK---WYFMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSK  180 (335)
T ss_pred             cCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh---CCeecccccHHHeEECCCCCEEECCccceeecccccccccccc
Confidence            56766664 3568999999999999999999999   999999999999999999999999999998654111       


Q ss_pred             -----cccccCCCCCCCcccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          136 -----THITSTGRRRTPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       136 -----~~~~~~~~~gt~~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                           .........+++.|+|||.+.+. .++.++|+||+|++++||++|++||....+
T Consensus       181 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~  239 (335)
T PTZ00024        181 DETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENE  239 (335)
T ss_pred             cccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence                 01111223457889999998764 468999999999999999999999976654

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.93  E-value=3e-26  Score=185.28  Aligned_cols=179  Identities=19%  Similarity=0.252  Sum_probs=134.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc-----------ccceEEEEEccCCchhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE-----------DTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++++..++..|+.|..+..... .....++..|.......+|++++...           ...+++++++. ++|..+
T Consensus        21 vy~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~   98 (337)
T cd07858          21 VCSAKNSETNEKVAIKKIANAFDN-RIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDVYIVYELMD-TDLHQI   98 (337)
T ss_pred             EEEEEecCCCCeEEEEEecccccc-cchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcEEEEEeCCC-CCHHHH
Confidence            578888777777877754332111 11223344566666677888876321           23467777775 567666


Q ss_pred             hc-cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           70 CK-KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        70 ~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      .. .+.+++..+..++.|++.||.|||+   ++++||||||+||+++.++.++|+|||++........  ......++..
T Consensus        99 ~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~~~~~  173 (337)
T cd07858          99 IRSSQTLSDDHCQYFLYQLLRGLKYIHS---ANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGD--FMTEYVVTRW  173 (337)
T ss_pred             HhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEECcCccccccCCCcc--cccccccccC
Confidence            54 4569999999999999999999999   9999999999999999999999999999986543211  1223456889


Q ss_pred             ccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          149 CEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       149 y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      |+|||.+.. ..++.++|+||+|+++++|++|++||...
T Consensus       174 y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  212 (337)
T cd07858         174 YRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGK  212 (337)
T ss_pred             ccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCC
Confidence            999998764 46889999999999999999999999754

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=4.8e-26  Score=182.20  Aligned_cols=182  Identities=22%  Similarity=0.303  Sum_probs=136.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHH--Hhcccccccc----------ccccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMI--AADNFSNLVG----------SEDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~----------~~~~~~~~~~~~~~~~l~~   68 (202)
                      |+|.+.+  ++.||+|+-...++.+      +..|.-+-  .-.+|.||+|          +.+..+++..|.+.|+|++
T Consensus       227 VwrG~wr--Ge~VAVKiF~srdE~S------WfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvTdYHe~GSL~D  298 (513)
T KOG2052|consen  227 VWRGRWR--GEDVAVKIFSSRDERS------WFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVTDYHEHGSLYD  298 (513)
T ss_pred             eeecccc--CCceEEEEecccchhh------hhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEeeecccCCcHHH
Confidence            4455544  4567777755544332      22222222  2256667663          4455679999999999999


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCC-----CCCeEEecCCCCcEEEcCCCceEEeeeecceeccccC--cccccC
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEEC-----RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH--THITST  141 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~-----~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~--~~~~~~  141 (202)
                      ++....++.+..++++..+++||.+||...     +..|.|||||..|||+..++.+.|+|+|||.......  -....+
T Consensus       299 yL~r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t~~idi~~N  378 (513)
T KOG2052|consen  299 YLNRNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDTDTIDIPPN  378 (513)
T ss_pred             HHhhccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEecccCCcccCCCC
Confidence            999999999999999999999999999743     5689999999999999999999999999998665432  222345


Q ss_pred             CCCCCCcccCCcccCCCC----C--CchhhHHHHHHHHHHHHcC----------CCCCcchhccc
Q 044746          142 GRRRTPGCEAPELWMPYS----V--TQKCDVFSFGMLLFEVVGR----------RRNLEKEISEG  190 (202)
Q Consensus       142 ~~~gt~~y~aPe~~~~~~----~--~~~~Diws~G~~l~el~~g----------~~p~~~~~~~~  190 (202)
                      ..+||.+|||||++....    |  -..+||||||.++||++.+          ++||.+..+.+
T Consensus       379 ~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~D  443 (513)
T KOG2052|consen  379 PRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSD  443 (513)
T ss_pred             CccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCC
Confidence            678999999999986421    1  1458999999999999754          36777666554

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.93  E-value=4.7e-26  Score=178.65  Aligned_cols=154  Identities=19%  Similarity=0.193  Sum_probs=124.2

Q ss_pred             ccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC----------CCCHHHHHHHHHHHHHHHHH
Q 044746           30 IRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN----------ILGFGQLREIEVSTSKGIAY   93 (202)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~~i~~~l~~   93 (202)
                      ..+..|.......+|++++.      .....+++++++++++|..++...          .+++..+..++.|++.||.|
T Consensus        53 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~  132 (275)
T cd05046          53 SEFRRELDMFRKLSHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDH  132 (275)
T ss_pred             HHHHHHHHHHHhcCCcceeeeEEEECCCCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHH
Confidence            34666777777778887652      345567899999999999887543          48999999999999999999


Q ss_pred             HHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHH
Q 044746           94 LHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLL  173 (202)
Q Consensus        94 lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l  173 (202)
                      ||+   .+++||||||+||+++.++.++++|||++........ .......++..|+|||.+.+...+.++|+||+|+++
T Consensus       133 LH~---~~i~H~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l  208 (275)
T cd05046         133 LSN---ARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEY-YKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLM  208 (275)
T ss_pred             hhh---cCcccCcCccceEEEeCCCcEEEcccccccccCcccc-cccCCceeEEeecChhhhccCCCCchhhHHHHHHHH
Confidence            999   9999999999999999999999999999874322211 112233456779999999888888999999999999


Q ss_pred             HHHHc-CCCCCcchh
Q 044746          174 FEVVG-RRRNLEKEI  187 (202)
Q Consensus       174 ~el~~-g~~p~~~~~  187 (202)
                      +++++ |..||....
T Consensus       209 ~~l~~~~~~p~~~~~  223 (275)
T cd05046         209 WEVFTQGELPFYGLS  223 (275)
T ss_pred             HHHHhCCCCCccccc
Confidence            99998 888986543

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.93  E-value=5.3e-26  Score=175.10  Aligned_cols=177  Identities=23%  Similarity=0.280  Sum_probs=138.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++.+..++..++.|.......   .....+..|.......+|++++.      ......++++++.+++|..+.... 
T Consensus        16 v~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~~   92 (253)
T cd05122          16 VYKARHKRTGKEVAIKVIKLESK---EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTN   92 (253)
T ss_pred             EEEEEECCCCcEEEEEEecccch---hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCCCcHHHHHhhcC
Confidence            46777765566555554433221   22334555666666666776542      234566888899999999888665 


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                       .+++..+..++.|++.||.+||+   .+++|+||+|+||+++.++.++|+|||.+........   .....++..|+||
T Consensus        93 ~~~~~~~~~~i~~~i~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~---~~~~~~~~~~~~P  166 (253)
T cd05122          93 QTLTESQIAYVCKELLKGLEYLHS---NGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA---RNTMVGTPYWMAP  166 (253)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhhc---CCEecCCCCHHHEEEccCCeEEEeecccccccccccc---ccceecCCcccCH
Confidence             79999999999999999999999   9999999999999999999999999999876544321   2234568899999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      |.+.+..++.++|+||+|++++++++|+.||...
T Consensus       167 E~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  200 (253)
T cd05122         167 EVINGKPYDYKADIWSLGITAIELAEGKPPYSEL  200 (253)
T ss_pred             HHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            9998888899999999999999999999999765

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=2.5e-26  Score=179.56  Aligned_cols=178  Identities=24%  Similarity=0.284  Sum_probs=133.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-cccccccc------------cccceEEEEEccCCchh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVGS------------EDTETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~------------~~~~~~~~~~~~~~~l~   67 (202)
                      ||++.+...++.++.|+......    ....+..|....... +|++++..            +...+++++++++++|.
T Consensus        22 v~~~~~~~~~~~~~~k~~~~~~~----~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~   97 (275)
T cd06608          22 VYKARHKKTGQLVAIKIMDIIED----EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVT   97 (275)
T ss_pred             EEEEEECCCCcEEEEEEEecCch----hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceEEEEEEEcCCCCcHH
Confidence            46777777777777766443222    112344554444443 67766531            33357889999999988


Q ss_pred             hhhc-----cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCC
Q 044746           68 LLCK-----KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTG  142 (202)
Q Consensus        68 ~~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~  142 (202)
                      .+..     ...+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++........  ....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~---~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~--~~~~  172 (275)
T cd06608          98 DLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHE---NKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLG--RRNT  172 (275)
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHHHEEEccCCeEEECCCccceecccchh--hhcC
Confidence            7764     3468999999999999999999999   9999999999999999999999999999875433221  1233


Q ss_pred             CCCCCcccCCcccCC-----CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          143 RRRTPGCEAPELWMP-----YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       143 ~~gt~~y~aPe~~~~-----~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ..|++.|+|||.+..     ..++.++|+||+|++++++++|++||....
T Consensus       173 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  222 (275)
T cd06608         173 FIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMH  222 (275)
T ss_pred             ccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccc
Confidence            457889999998753     346788999999999999999999997543

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.93  E-value=8.1e-26  Score=175.45  Aligned_cols=153  Identities=22%  Similarity=0.386  Sum_probs=123.1

Q ss_pred             cCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCe
Q 044746           31 RFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--NILGFGQLREIEVSTSKGIAYLHEECRQKI  102 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i  102 (202)
                      .|..|.......+|++++.      ......++++++.+++|..++..  ..+++..+..++.|++.|+.|||+   .++
T Consensus        45 ~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i  121 (256)
T cd05112          45 DFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLES---SNV  121 (256)
T ss_pred             HHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHH---CCc
Confidence            3556666666777886652      33445688889999999888754  458999999999999999999999   999


Q ss_pred             EEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCC
Q 044746          103 VHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRR  181 (202)
Q Consensus       103 iHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~  181 (202)
                      +|+||||+||+++.++.++|+|||++......... ......++..|+|||.+.+..++.++|+||+|+++||+++ |+.
T Consensus       122 ~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~-~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~  200 (256)
T cd05112         122 IHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYT-SSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKT  200 (256)
T ss_pred             cccccccceEEEcCCCeEEECCCcceeecccCccc-ccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999998765332211 1122234678999999988889999999999999999998 999


Q ss_pred             CCcchh
Q 044746          182 NLEKEI  187 (202)
Q Consensus       182 p~~~~~  187 (202)
                      ||....
T Consensus       201 p~~~~~  206 (256)
T cd05112         201 PYENRS  206 (256)
T ss_pred             CCCcCC
Confidence            997554

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.93  E-value=7.7e-26  Score=178.89  Aligned_cols=181  Identities=17%  Similarity=0.207  Sum_probs=131.1

Q ss_pred             CCccccC---CCcceeehhhhchhhhh-ccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhh
Q 044746            1 MEKPRNR---GSTRFITRTIDKSLDAM-EMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~---~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++++.   ..+..++.|+.+..... .......+..|..+.... +|++++.      .+....++++++++++|..+
T Consensus        16 v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~   95 (290)
T cd05613          16 VFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLHLILDYINGGELFTH   95 (290)
T ss_pred             EEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEEEEEecCCCCcHHHH
Confidence            3555543   34556666654432221 111223344454444444 5676653      33445688999999999887


Q ss_pred             hcc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           70 CKK-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        70 ~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      +.. ..+++..+..++.|++.||.|||+   .+++||||+|+||+++.++.++|+|||++......... ......|+..
T Consensus        96 l~~~~~l~~~~~~~~~~qi~~al~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~~  171 (290)
T cd05613          96 LSQRERFKEQEVQIYSGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVE-RAYSFCGTIE  171 (290)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeEECCCCCEEEeeCccceeccccccc-ccccccCCcc
Confidence            744 458999999999999999999999   99999999999999999999999999999865432211 1223457889


Q ss_pred             ccCCcccCCC--CCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          149 CEAPELWMPY--SVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       149 y~aPe~~~~~--~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      |+|||.+...  .++.++|+||+|++++++++|+.||..
T Consensus       172 y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~  210 (290)
T cd05613         172 YMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTV  210 (290)
T ss_pred             cCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCc
Confidence            9999998753  467889999999999999999999964

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=6.7e-27  Score=175.74  Aligned_cols=190  Identities=21%  Similarity=0.304  Sum_probs=138.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCC-cccCCcHHHHHHhcccccccc------------ccccceEEE--EEccCCc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDK-PIRFTSPQRMIAADNFSNLVG------------SEDTETYIK--GFLAMGP   65 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~------------~~~~~~~~~--~~~~~~~   65 (202)
                      |||||.+..++-|+.+..  +-+.+.+. +..-..+..++....|+|++.            .+.-+.+|+  .+++ ..
T Consensus        33 VFkAr~~n~~kkvalkkv--lmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t~ylVf~~ce-hD  109 (376)
T KOG0669|consen   33 VFKARSKNTGKKVALKKV--LMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRATFYLVFDFCE-HD  109 (376)
T ss_pred             HHHHhhcCccchhHHHHH--HHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccceeeeeHHHhh-hh
Confidence            689999999988776543  32222222 222334555556666665431            111222333  3333 46


Q ss_pred             hhhhhccC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc--ccccC
Q 044746           66 FYLLCKKN--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT--HITST  141 (202)
Q Consensus        66 l~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~--~~~~~  141 (202)
                      |.+++...  +++..+++.++.++..||.|+|.   +.|+|||+|+.|+||+.++.+||+|||+++.++....  ....+
T Consensus       110 LaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr---~kilHRDmKaaNvLIt~dgilklADFGlar~fs~~~n~~kpryt  186 (376)
T KOG0669|consen  110 LAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHR---NKILHRDMKAANVLITKDGILKLADFGLARAFSTSKNVVKPRYT  186 (376)
T ss_pred             HHHHhcCccccccHHHHHHHHHHHHHHHHHHHH---hhHHhhcccHhhEEEcCCceEEeeccccccceecccccCCCCcc
Confidence            77777554  58999999999999999999999   9999999999999999999999999999976543211  11123


Q ss_pred             CCCCCCcccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhccccccccc
Q 044746          142 GRRRTPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPK  196 (202)
Q Consensus       142 ~~~gt~~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~~~~~~~  196 (202)
                      .++-|..|.+||.+.+. .++++.|+|..||++.||.||.+-+.++.++.+..+++
T Consensus       187 nrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is  242 (376)
T KOG0669|consen  187 NRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLIS  242 (376)
T ss_pred             cceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHH
Confidence            34458999999998874 78999999999999999999999999988887655543

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.93  E-value=7.2e-26  Score=177.95  Aligned_cols=181  Identities=22%  Similarity=0.285  Sum_probs=135.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc------cccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV------GSEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++.+..+++.++.|..+.... .......+..|.......+|++++      ..+....++++++++ ++..++..  
T Consensus        15 v~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~-~l~~~l~~~~   92 (283)
T cd05118          15 VYKARDKLTGEIVAIKKIKLRFE-SEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFMDT-DLYKLIKDRQ   92 (283)
T ss_pred             EEEEEcCCCCcEEEEEEeccccc-cchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEeccCC-CHHHHHHhhc
Confidence            57777766666666654322211 112233455555556666677654      244556688888875 66666544  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++++|||.+........  ......++..|+||
T Consensus        93 ~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~--~~~~~~~~~~~~~P  167 (283)
T cd05118          93 RGLPESLIKSYLYQLLQGLAFCHS---HGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVR--PYTHYVVTRWYRAP  167 (283)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHH---CCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcc--cccCccCcccccCc
Confidence            378999999999999999999999   9999999999999999999999999999986644321  12234567889999


Q ss_pred             cccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |.+.+. .++.++|+||+|++++++++|+.||.....
T Consensus       168 E~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~  204 (283)
T cd05118         168 ELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSE  204 (283)
T ss_pred             HHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            998776 788999999999999999999999976553

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.93  E-value=4e-26  Score=184.94  Aligned_cols=180  Identities=16%  Similarity=0.247  Sum_probs=134.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc--------------------ccceEEEEE
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE--------------------DTETYIKGF   60 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------------------~~~~~~~~~   60 (202)
                      ||++.+...++.|+.|.......   .....+..|.......+|++++...                    ...++++++
T Consensus        21 vy~~~~~~~~~~v~iK~i~~~~~---~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~   97 (342)
T cd07854          21 VFSAVDSDCDKRVAVKKIVLTDP---QSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEY   97 (342)
T ss_pred             EEEEEECCCCcEEEEEEEecCCC---chHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccccccccceEEEEeec
Confidence            57888877777777665433221   2223355566666777888766321                    124577777


Q ss_pred             ccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC-CCceEEeeeecceeccccCcccc
Q 044746           61 LAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE-NFFPKAADFGLAKLYNREHTHIT  139 (202)
Q Consensus        61 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~-~~~~kl~dfgl~~~~~~~~~~~~  139 (202)
                      +. ++|..+...+.+++..+..++.|++.||.|||+   .+++||||||+||+++. ++.++++|||++...........
T Consensus        98 ~~-~~L~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~givH~dikp~Nili~~~~~~~kl~dfg~~~~~~~~~~~~~  173 (342)
T cd07854          98 ME-TDLANVLEQGPLSEEHARLFMYQLLRGLKYIHS---ANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKG  173 (342)
T ss_pred             cc-ccHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEcCCCceEEECCcccceecCCcccccc
Confidence            76 578888877789999999999999999999999   99999999999999974 56789999999976543221111


Q ss_pred             -cCCCCCCCcccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          140 -STGRRRTPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       140 -~~~~~gt~~y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                       .....++..|+|||.+.. ..++.++|+||+||++++|++|+.||....
T Consensus       174 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~  223 (342)
T cd07854         174 YLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAH  223 (342)
T ss_pred             ccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence             122346888999998654 567889999999999999999999997543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.93  E-value=5.1e-26  Score=176.96  Aligned_cols=181  Identities=20%  Similarity=0.221  Sum_probs=142.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++.+...++.++.|........  .....+..+.......+|++++.      ......++++++++++|..++.. .
T Consensus        17 v~~~~~~~~~~~~~vk~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   94 (264)
T cd06623          17 VYKVRHKPTGKIYALKKIHVDGDE--EFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYMDGGSLADLLKKVG   94 (264)
T ss_pred             EEEEEEcCCCcEEEEEEeccCcch--HHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEecCCCcHHHHHHHcC
Confidence            577888877777776654332111  22345666666666777887653      33456688899999999998865 6


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .++......++.|++.|+.|||+.  .+++|+||+|+||+++.++.++|+|||++..........  ....++..|+|||
T Consensus        95 ~l~~~~~~~~~~~l~~~l~~lh~~--~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~--~~~~~~~~y~~pE  170 (264)
T cd06623          95 KIPEPVLAYIARQILKGLDYLHTK--RHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQC--NTFVGTVTYMSPE  170 (264)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcc--CCCccCCCCHHHEEECCCCCEEEccCccceecccCCCcc--cceeecccccCHh
Confidence            799999999999999999999963  799999999999999999999999999998654332221  2234688899999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      .+....++.++|+||||++++++++|+.||....
T Consensus       171 ~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~  204 (264)
T cd06623         171 RIQGESYSYAADIWSLGLTLLECALGKFPFLPPG  204 (264)
T ss_pred             hhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence            9988888999999999999999999999997764

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.93  E-value=9.8e-26  Score=174.99  Aligned_cols=150  Identities=24%  Similarity=0.382  Sum_probs=121.9

Q ss_pred             cCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhccC---CCCHHHHHHHHHHHHHHHHHHHhCCCCCe
Q 044746           31 RFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKKN---ILGFGQLREIEVSTSKGIAYLHEECRQKI  102 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~~~~i  102 (202)
                      .+..|.......+|++++.     ......++++++.+++|..++...   .+++..+..++.|++.||.|||+   .++
T Consensus        45 ~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~~  121 (254)
T cd05083          45 AFLEETAVMTKLHHKNLVRLLGVILHNGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLES---KKL  121 (254)
T ss_pred             HHHHHHHHHHhCCCCCcCeEEEEEcCCCcEEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHh---CCe
Confidence            4556666677778887652     223346888899999998887543   48999999999999999999999   999


Q ss_pred             EEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCC
Q 044746          103 VHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRR  181 (202)
Q Consensus       103 iHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~  181 (202)
                      +||||||+||+++.++.++|+|||++.......     .....+..|+|||.+.+..++.++|+||+|++++||++ |++
T Consensus       122 ~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~  196 (254)
T cd05083         122 VHRDLAARNILVSEDGVAKVSDFGLARVGSMGV-----DNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRA  196 (254)
T ss_pred             eccccCcceEEEcCCCcEEECCCccceeccccC-----CCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999987543221     11223567999999988889999999999999999997 999


Q ss_pred             CCcchhc
Q 044746          182 NLEKEIS  188 (202)
Q Consensus       182 p~~~~~~  188 (202)
                      ||.....
T Consensus       197 p~~~~~~  203 (254)
T cd05083         197 PYPKMSL  203 (254)
T ss_pred             CCccCCH
Confidence            9976544

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.93  E-value=5e-26  Score=184.46  Aligned_cols=177  Identities=22%  Similarity=0.245  Sum_probs=135.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc------------cceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED------------TETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------~~~~~~~~~~~~~l~~   68 (202)
                      ||++++...+..|+.|...... ........+..|.......+|++++...+            ...++++++ +++|..
T Consensus        31 V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~  108 (343)
T cd07880          31 VCSALDRRTGAKVAIKKLYRPF-QSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRFHDFYLVMPFM-GTDLGK  108 (343)
T ss_pred             EEEEEECCCCcEEEEEEecccc-cchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccccceEEEEEecC-CCCHHH
Confidence            5777777777777776543211 11111223556667777788888763211            124666666 678888


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      +.....+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++++|||++......     .....+++.
T Consensus       109 ~~~~~~l~~~~~~~i~~qi~~al~~LH~---~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~-----~~~~~~~~~  180 (343)
T cd07880         109 LMKHEKLSEDRIQFLVYQMLKGLKYIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLARQTDSE-----MTGYVVTRW  180 (343)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeecccccccccC-----ccccccCCc
Confidence            8887889999999999999999999999   99999999999999999999999999998754322     123345889


Q ss_pred             ccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          149 CEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       149 y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |+|||.+.+ ..++.++|+||+|++++++++|++||....
T Consensus       181 y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~  220 (343)
T cd07880         181 YRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHD  220 (343)
T ss_pred             ccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999876 457889999999999999999999997543

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.93  E-value=6.8e-26  Score=175.17  Aligned_cols=183  Identities=23%  Similarity=0.256  Sum_probs=143.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------cc--ccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SE--DTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~--~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++.+..++..++.|+....... ......+..+.......+|++++.      ..  ....+++++.++++|.++...
T Consensus        16 v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~   94 (260)
T cd06606          16 VYLALDKDTGELMAVKSVELSGDS-EEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKK   94 (260)
T ss_pred             EEEEEECCCCcEEEEEEeeccccc-hHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEEecCCCcHHHHHHH
Confidence            577777766777776664333221 222345666666777777887653      22  456688899999999888765


Q ss_pred             C-CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 N-ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 ~-~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                      . .+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||.+................++..|+|
T Consensus        95 ~~~~~~~~~~~~~~~l~~~l~~lh~---~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~  171 (260)
T cd06606          95 FGKLPEPVIRKYTRQILEGLAYLHS---NGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMA  171 (260)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEcCCCCEEEcccccEEecccccccccccCCCCCccccC
Confidence            5 79999999999999999999999   9999999999999999999999999999987654432111233456889999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ||.+.....+.++|+||+|++++++++|..||....
T Consensus       172 pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  207 (260)
T cd06606         172 PEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELG  207 (260)
T ss_pred             HhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            999988888999999999999999999999997654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.93  E-value=1.3e-26  Score=191.52  Aligned_cols=180  Identities=22%  Similarity=0.310  Sum_probs=146.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc------cccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV------GSEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      |..+++.-++..||.|+-.+.. .+......+..|..++...+|||++      ......+++++|..+|.++.++.+ +
T Consensus        72 V~La~~~~t~~~VaiK~idkt~-ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV~eya~~ge~~~yl~~~g  150 (596)
T KOG0586|consen   72 VKLARHILTGTEVAIKIIDKTQ-LNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLVMEYASGGELFDYLVKHG  150 (596)
T ss_pred             EEeeEecCCCceEEEEEehhcc-cChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEEEEeccCchhHHHHHhcc
Confidence            3456666667777776543332 2223334477788888899999885      355667799999999999888855 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+....+..++.|+.+|++|||+   +.|+|||||.+|++++.+.++||+|||++..+.....   ....+|++.|.|||
T Consensus       151 r~~e~~ar~~F~q~vsaveYcH~---k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~~---lqt~cgsppyAaPE  224 (596)
T KOG0586|consen  151 RMKEKEARAKFRQIVSAVEYCHS---KNIVHRDLKAENILLDENMNIKIADFGFSTFFDYGLM---LQTFCGSPPYAAPE  224 (596)
T ss_pred             cchhhhhhhhhHHHHHHHHHHhh---cceeccccchhhcccccccceeeeccccceeeccccc---ccccCCCCCccChH
Confidence            57779999999999999999999   9999999999999999999999999999987764332   45578899999999


Q ss_pred             ccCCCCCC-chhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMPYSVT-QKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~~-~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ++.+..|+ +++|+||+|+++|-|+.|..||++..
T Consensus       225 l~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~  259 (596)
T KOG0586|consen  225 LFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQN  259 (596)
T ss_pred             hhcCcccCCcceehhhhhhhheeeeecccccCCcc
Confidence            99988765 77999999999999999999999654

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.93  E-value=1.1e-25  Score=177.08  Aligned_cols=150  Identities=19%  Similarity=0.262  Sum_probs=119.2

Q ss_pred             ccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCC
Q 044746           30 IRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--NILGFGQLREIEVSTSKGIAYLHEECRQK  101 (202)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~  101 (202)
                      ..|..+.......+|+|++.      ......++++++++++|..++..  +.+++..+..++.|++.||.|||+   ++
T Consensus        61 ~~~~~~~~~~~~l~h~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~  137 (274)
T cd05076          61 LAFFETASLMSQVSHIHLAFVHGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLED---KN  137 (274)
T ss_pred             HHHHHHHHHHhcCCCCCeeeEEEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHc---CC
Confidence            34555666667778888763      34456789999999999888743  568999999999999999999999   99


Q ss_pred             eEEecCCCCcEEEcCCC-------ceEEeeeecceeccccCcccccCCCCCCCcccCCcccCC-CCCCchhhHHHHHHHH
Q 044746          102 IVHYDIKPESVLLDENF-------FPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMP-YSVTQKCDVFSFGMLL  173 (202)
Q Consensus       102 iiHrdlk~~nil~~~~~-------~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~-~~~~~~~Diws~G~~l  173 (202)
                      ++||||||+||+++..+       .++++|||++......      ....++..|+|||.+.. ..++.++|+||||+++
T Consensus       138 iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~------~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l  211 (274)
T cd05076         138 LVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSR------EERVERIPWIAPECVPGGNSLSTAADKWSFGTTL  211 (274)
T ss_pred             ccCCCCCcccEEEeccCcccCccceeeecCCccccccccc------cccccCCcccCchhhcCCCCCCcHHHHHHHHHHH
Confidence            99999999999997543       4799999987643211      12345778999998865 5688999999999999


Q ss_pred             HHH-HcCCCCCcchhc
Q 044746          174 FEV-VGRRRNLEKEIS  188 (202)
Q Consensus       174 ~el-~~g~~p~~~~~~  188 (202)
                      ||+ ++|+.||....+
T Consensus       212 ~el~~~g~~p~~~~~~  227 (274)
T cd05076         212 LEICFDGEVPLKERTP  227 (274)
T ss_pred             HHHHhCCCCCccccCh
Confidence            998 479999976543

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.93  E-value=2.5e-26  Score=196.01  Aligned_cols=181  Identities=23%  Similarity=0.228  Sum_probs=148.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcH-HHHHHhccccccc-----------cccccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSP-QRMIAADNFSNLV-----------GSEDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i-----------~~~~~~~~~~~~~~~~~l~~   68 (202)
                      |||++.+..++.+|+||.........    ++..| ++.....+|+|+.           |.++..+++++|+.+|+.-+
T Consensus        35 v~k~k~~~~~~~aa~kI~~~~~d~de----EiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~DqLWLVMEfC~gGSVTD  110 (953)
T KOG0587|consen   35 VYKGRHVKTGQLAAIKIMDPTEDEEE----EIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQLWLVMEFCGGGSVTD  110 (953)
T ss_pred             EEEEeeeecCceeeeEeecCCccccH----HHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCeEEEEeeccCCccHHH
Confidence            78999999999999999765543332    22233 3344556777754           67788899999999999887


Q ss_pred             hhc---cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCC
Q 044746           69 LCK---KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR  145 (202)
Q Consensus        69 ~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~g  145 (202)
                      +.+   ..++.|.-+..|+..++.|+.+||.   +.+||||+|-.|||++.++.+||.|||++..+.....  ......|
T Consensus       111 LVKn~~g~rl~E~~IaYI~re~lrgl~HLH~---nkviHRDikG~NiLLT~e~~VKLvDFGvSaQldsT~g--rRnT~iG  185 (953)
T KOG0587|consen  111 LVKNTKGNRLKEEWIAYILREILRGLAHLHN---NKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDSTVG--RRNTFIG  185 (953)
T ss_pred             HHhhhcccchhhHHHHHHHHHHHHHHHHHhh---cceeeecccCceEEEeccCcEEEeeeeeeeeeecccc--cccCcCC
Confidence            775   4569999999999999999999999   9999999999999999999999999999987654332  2344678


Q ss_pred             CCcccCCcccCCC-----CCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          146 TPGCEAPELWMPY-----SVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       146 t~~y~aPe~~~~~-----~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      ||.|||||++...     .|+.++|+||+|++..||..|.+|+++..+.-
T Consensus       186 tP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPmr  235 (953)
T KOG0587|consen  186 TPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPMR  235 (953)
T ss_pred             CcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcchhh
Confidence            9999999999753     47889999999999999999999999988764

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.93  E-value=7.2e-26  Score=177.05  Aligned_cols=142  Identities=25%  Similarity=0.331  Sum_probs=118.0

Q ss_pred             hcccccccc------ccccceEEEEEccCCchhhhh-----ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCC
Q 044746           41 ADNFSNLVG------SEDTETYIKGFLAMGPFYLLC-----KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKP  109 (202)
Q Consensus        41 ~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~  109 (202)
                      ..+|++++.      ..+...++++++++++|..++     ....+++..+..++.|++.||.|||+.  .+++|+||+|
T Consensus        65 ~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~--~~i~H~dl~~  142 (269)
T cd08528          65 QLRHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKE--KRIVHRDLTP  142 (269)
T ss_pred             cCCCCCeeeEEeeEccCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccC--CceeecCCCH
Confidence            457776652      445667889999999998765     234689999999999999999999962  6899999999


Q ss_pred             CcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          110 ESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       110 ~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +||+++.++.++|+|||++.......   ......|+..|+|||.+.+..++.++|+||+|+++|++++|++||....
T Consensus       143 ~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~  217 (269)
T cd08528         143 NNIMLGEDDKVTITDFGLAKQKQPES---KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTN  217 (269)
T ss_pred             HHEEECCCCcEEEecccceeeccccc---ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccC
Confidence            99999999999999999998654432   2233456889999999998889999999999999999999999996543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.93  E-value=7.8e-27  Score=183.57  Aligned_cols=180  Identities=22%  Similarity=0.299  Sum_probs=131.1

Q ss_pred             CccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccc--------ccccccccceEEEEEccCCchhhhhccC
Q 044746            2 EKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFS--------NLVGSEDTETYIKGFLAMGPFYLLCKKN   73 (202)
Q Consensus         2 ~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~~~~~~l~~~~~~~   73 (202)
                      -++.++..+..||.||.+.-.........++..-+.+.......        ++....+..+++.+.+ |-+++++++.+
T Consensus       106 ~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghiCivfell-G~S~~dFlk~N  184 (415)
T KOG0671|consen  106 VECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHICIVFELL-GLSTFDFLKEN  184 (415)
T ss_pred             EEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCceEEEEecc-ChhHHHHhccC
Confidence            34556667888998887766555444344343333333332111        1122333333444443 34788888765


Q ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC--------------------CCceEEeeeeccee
Q 044746           74 ---ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE--------------------NFFPKAADFGLAKL  130 (202)
Q Consensus        74 ---~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~--------------------~~~~kl~dfgl~~~  130 (202)
                         +++...++.++.|++.++.|||+   .+++|-||||+|||+.+                    +..++++|||.|+.
T Consensus       185 ~y~~fpi~~ir~m~~QL~~sv~fLh~---~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf  261 (415)
T KOG0671|consen  185 NYIPFPIDHIRHMGYQLLESVAFLHD---LKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATF  261 (415)
T ss_pred             CccccchHHHHHHHHHHHHHHHHHHh---cceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcce
Confidence               48889999999999999999999   99999999999999921                    33579999999987


Q ss_pred             ccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          131 YNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       131 ~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      .......     .+.|..|.|||++.+-+++.++||||+||+|.|+.||...|....+.+
T Consensus       262 ~~e~hs~-----iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~E  316 (415)
T KOG0671|consen  262 DHEHHST-----IVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLE  316 (415)
T ss_pred             eccCcce-----eeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHH
Confidence            6554432     344889999999999999999999999999999999999998776443

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.93  E-value=7.2e-26  Score=182.20  Aligned_cols=183  Identities=19%  Similarity=0.256  Sum_probs=138.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc-----------ccceEEEEEccCCchhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE-----------DTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++++...++.++.|....... .......+..|.......+|++++...           ....++++++. ++|..+
T Consensus        16 v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~   93 (330)
T cd07834          16 VCSAVDKRTGRKVAIKKISNVFD-DLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYIVTELME-TDLHKV   93 (330)
T ss_pred             EEEEEeCCCCcEEEEEeeccccc-cchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEEEecchh-hhHHHH
Confidence            57788877667777664432211 123334566676777777888765211           24457777777 467666


Q ss_pred             hcc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc-cccCCCCCCC
Q 044746           70 CKK-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-ITSTGRRRTP  147 (202)
Q Consensus        70 ~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~gt~  147 (202)
                      +.. ..+++..+..++.|++.||.|||+   .+++|+||||.||+++.++.++|+|||++......... .......+++
T Consensus        94 l~~~~~l~~~~~~~i~~~l~~~l~~LH~---~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~  170 (330)
T cd07834          94 IKSPQPLTDDHIQYFLYQILRGLKYLHS---ANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTR  170 (330)
T ss_pred             HhCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEcccCceEeeccccccccccccccccc
Confidence            654 479999999999999999999999   99999999999999999999999999999876543210 1123345688


Q ss_pred             cccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          148 GCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       148 ~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .|+|||.+.+. .++.++|+||+|+++++|++|++||.....
T Consensus       171 ~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~  212 (330)
T cd07834         171 WYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDY  212 (330)
T ss_pred             CcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCH
Confidence            89999999877 789999999999999999999999976553

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.93  E-value=1.2e-25  Score=181.16  Aligned_cols=177  Identities=19%  Similarity=0.233  Sum_probs=135.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc---c----cccceEEEEEccCCchhhhhccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG---S----EDTETYIKGFLAMGPFYLLCKKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~----~~~~~~~~~~~~~~~l~~~~~~~   73 (202)
                      ||++++...+..++.|...... ........+..|..+....+|++++.   .    +....++++++ +++|..+++..
T Consensus        26 v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~  103 (328)
T cd07856          26 VCSARDQLTGQNVAIKKIMKPF-STPVLAKRTYRELKLLKHLRHENIISLSDIFISPLEDIYFVTELL-GTDLHRLLTSR  103 (328)
T ss_pred             EEEEEECCCCCEEEEEEecccc-cccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcEEEEeehh-ccCHHHHHhcC
Confidence            5778877777777766432211 11122334556666777778887763   1    23345666666 56888888888


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .++......++.|+++||.|||+   .+++|+||+|+||+++.++.++|+|||++......     .....+++.|+|||
T Consensus       104 ~~~~~~~~~~~~ql~~aL~~LH~---~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~-----~~~~~~~~~y~aPE  175 (328)
T cd07856         104 PLEKQFIQYFLYQILRGLKYVHS---AGVVHRDLKPSNILINENCDLKICDFGLARIQDPQ-----MTGYVSTRYYRAPE  175 (328)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEeECCCCCEEeCccccccccCCC-----cCCCcccccccCce
Confidence            89999999999999999999999   99999999999999999999999999998754321     12234578899999


Q ss_pred             ccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      .+.+ ..++.++|+||+|++++++++|++||....
T Consensus       176 ~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~  210 (328)
T cd07856         176 IMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKD  210 (328)
T ss_pred             eeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            8765 568899999999999999999999997544

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.93  E-value=7.5e-26  Score=178.68  Aligned_cols=179  Identities=25%  Similarity=0.306  Sum_probs=127.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCC--chhhhh-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMG--PFYLLC-   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~--~l~~~~-   70 (202)
                      ||++++...++.++.|........  .....+..|....... +|++++.      ..+...++++++...  ++.... 
T Consensus        20 vy~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~~~~l~~l~~~~~   97 (288)
T cd06616          20 VNKMLHKPSGTIMAVKRIRSTVDE--KEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMELMDISLDKFYKYVY   97 (288)
T ss_pred             EEEEEECCCCCEEEEEEehhccCh--HHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEecccCCHHHHHHHHH
Confidence            577888877788877754322111  1223345555444444 4777663      223344566665432  222222 


Q ss_pred             --ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           71 --KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        71 --~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                        ....+++..+..++.+++.||+|||+.  .+++||||||+||+++.++.++|+|||++.........   ....|++.
T Consensus        98 ~~~~~~l~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~~~  172 (288)
T cd06616          98 EVLKSVIPEEILGKIAVATVKALNYLKEE--LKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAK---TRDAGCRP  172 (288)
T ss_pred             HhhcCCCCHHHHHHHHHHHHHHHHHHhhc--CCeeccCCCHHHEEEccCCcEEEeecchhHHhccCCcc---ccccCccC
Confidence              235699999999999999999999972  59999999999999999999999999998754332211   22346889


Q ss_pred             ccCCcccCCC---CCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          149 CEAPELWMPY---SVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       149 y~aPe~~~~~---~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      |+|||.+.+.   .++.++|+||+|++++|+++|++||...
T Consensus       173 y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  213 (288)
T cd06616         173 YMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKW  213 (288)
T ss_pred             ccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhc
Confidence            9999998765   6889999999999999999999999754

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.93  E-value=1.7e-25  Score=175.78  Aligned_cols=180  Identities=21%  Similarity=0.282  Sum_probs=136.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++.....++.++.|+..... ........+..|.......+|++++.      ......+++++.. ++|..++... 
T Consensus        15 vy~~~~~~~~~~~~iK~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~i~~~~   92 (282)
T cd07829          15 VYKARDKKTGEIVALKKIRLDN-EEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYCD-MDLKKYLDKRP   92 (282)
T ss_pred             EEEeeecCCCcEEEEEEecccc-ccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCcC-cCHHHHHHhhc
Confidence            5777887777777776654332 11122233444555556666776652      3345667777777 5788888665 


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                       .+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++........  ......++..|+||
T Consensus        93 ~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~~~aP  167 (282)
T cd07829          93 GPLSPNLIKSIMYQLLRGLAYCHS---HRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLR--TYTHEVVTLWYRAP  167 (282)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChheEEEcCCCCEEEecCCcccccCCCcc--ccCccccCcCcCCh
Confidence             79999999999999999999999   9999999999999999999999999999886543321  11223346789999


Q ss_pred             cccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |.+... .++.++|+||+|++++|+++|++||....
T Consensus       168 E~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~  203 (282)
T cd07829         168 EILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDS  203 (282)
T ss_pred             HHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCcc
Confidence            998766 78899999999999999999999997654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.93  E-value=8.1e-26  Score=175.08  Aligned_cols=180  Identities=22%  Similarity=0.335  Sum_probs=137.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++.+...++.++.|........ .....++..|.......+|++++.      ......+++++.++++|..+...  
T Consensus        16 v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~   94 (256)
T cd08530          16 VYKVKRLSDNQFYALKEVDLGSMS-QKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRK   94 (256)
T ss_pred             EEEEEECCCCCEEEEEEEehhhcc-HHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehhcCCCCHHHHHHHHH
Confidence            466766666666665543322111 111233444555566667776652      33556688888999999887754  


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           73 ---NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        73 ---~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                         ..+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++.......    .....+++.|
T Consensus        95 ~~~~~~~~~~~~~~~~~l~~al~~lh~---~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~----~~~~~~~~~~  167 (256)
T cd08530          95 KKRKLIPEQEIWRIFIQLLRGLQALHE---QKILHRDLKSANILLVANDLVKIGDLGISKVLKKNM----AKTQIGTPHY  167 (256)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCcceEEEecCCcEEEeeccchhhhccCC----cccccCCccc
Confidence               568999999999999999999999   999999999999999999999999999998654431    1224568899


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++||.+.+..++.++|+||+|++++++++|+.||.....
T Consensus       168 ~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~  206 (256)
T cd08530         168 MAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSM  206 (256)
T ss_pred             cCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            999999988889999999999999999999999976544

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=9.4e-26  Score=204.41  Aligned_cols=170  Identities=19%  Similarity=0.296  Sum_probs=131.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||+++....+..||+|..+.....       ...+.......+|++++.      ......++++|+++|+|.++++  .
T Consensus       706 Vy~~~~~~~~~~vavK~~~~~~~~-------~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~--~  776 (968)
T PLN00113        706 SYKGKSIKNGMQFVVKEINDVNSI-------PSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLR--N  776 (968)
T ss_pred             EEEEEECCCCcEEEEEEccCCccc-------cHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHh--c
Confidence            688888777777777654322111       112244455668898774      3344579999999999999885  4


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      ++|..+..++.|++.|++|||..+..+++|||+||+||+++.++..++. ++.......      .....+++.|+|||+
T Consensus       777 l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~------~~~~~~t~~y~aPE~  849 (968)
T PLN00113        777 LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCT------DTKCFISSAYVAPET  849 (968)
T ss_pred             CCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-ecccccccc------CCCccccccccCccc
Confidence            8999999999999999999995444899999999999999988887775 665543211      122356899999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      +.+..++.++|||||||++|||+||+.||+..
T Consensus       850 ~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~  881 (968)
T PLN00113        850 RETKDITEKSDIYGFGLILIELLTGKSPADAE  881 (968)
T ss_pred             ccCCCCCcccchhhHHHHHHHHHhCCCCCCcc
Confidence            99889999999999999999999999999644

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.93  E-value=1.5e-25  Score=178.04  Aligned_cols=181  Identities=22%  Similarity=0.288  Sum_probs=133.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc----------------cccceEEEEEccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS----------------EDTETYIKGFLAMG   64 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------~~~~~~~~~~~~~~   64 (202)
                      ||++.+...++.|+.|..+.... .......+..|.......+|++++..                .+...++++++.+ 
T Consensus        23 v~~~~~~~~~~~v~iK~~~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-  100 (302)
T cd07864          23 VYKARDKDTGELVALKKVRLDNE-KEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDH-  100 (302)
T ss_pred             EEEEEECCCCcEEEEEEEeeccc-ccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhccccCCcEEEEEcccCc-
Confidence            57777777777777765433221 11222334456666677788877642                1245577777775 


Q ss_pred             chhhhhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCC
Q 044746           65 PFYLLCKK--NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTG  142 (202)
Q Consensus        65 ~l~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~  142 (202)
                      ++...+..  ..+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++........ .....
T Consensus       101 ~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~-~~~~~  176 (302)
T cd07864         101 DLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHK---KNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEES-RPYTN  176 (302)
T ss_pred             cHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCcEEeCcccccccccCCcc-ccccc
Confidence            55555543  368999999999999999999999   9999999999999999999999999999986543221 11122


Q ss_pred             CCCCCcccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          143 RRRTPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       143 ~~gt~~y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ..++..|+|||.+.+ ..++.++|+||+||+++||++|++||....
T Consensus       177 ~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~  222 (302)
T cd07864         177 KVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQ  222 (302)
T ss_pred             ceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            344778999998765 357889999999999999999999997543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.93  E-value=7.5e-26  Score=175.64  Aligned_cols=181  Identities=17%  Similarity=0.214  Sum_probs=137.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      +|++++..+++.++.|........ ......+..|.......+|++++.      ..+...++++++.+++|......  
T Consensus        16 ~~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~   94 (256)
T cd08218          16 AILVKSKEDGKQYVIKEINISKMS-PKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYCEGGDLYKKINAQR   94 (256)
T ss_pred             EEEEEEcCCCCEEEEEEEEhHhCC-hHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEecCCCCcHHHHHHhcc
Confidence            356666666666666543322111 111234556666677778887652      44556688999999999887754  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       ..+++.++..++.|++.|+.|||+   .+++|+||+|+||+++.++.++++|||++.........  .....|++.|+|
T Consensus        95 ~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~--~~~~~~~~~~~~  169 (256)
T cd08218          95 GVLFPEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVEL--ARTCIGTPYYLS  169 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEEeeccceeecCcchhh--hhhccCCccccC
Confidence             257899999999999999999999   99999999999999999999999999999765432211  122346888999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ||.+.+..++.++|+||||++++++++|+.||....
T Consensus       170 pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~  205 (256)
T cd08218         170 PEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGN  205 (256)
T ss_pred             HHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCC
Confidence            999988888999999999999999999999997544

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.93  E-value=1.1e-25  Score=174.62  Aligned_cols=181  Identities=19%  Similarity=0.265  Sum_probs=139.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++.+..++..++.|...... ........+..|.......+|++++.      ..+...++++++.+++|..+.... 
T Consensus        16 v~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~   94 (257)
T cd08225          16 IYLAKAKSDSEHCVIKEIDLTK-MPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEYCDGGDLMKRINRQR   94 (257)
T ss_pred             EEEEEEcCCCceEEEEEeeHhh-ccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEecCCCCcHHHHHHhcc
Confidence            5777887777777776643321 11122334556666777778887653      344567889999999998877543 


Q ss_pred             --CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC-ceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 --ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF-FPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 --~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~-~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                        .+++..+..++.|++.||.|||+   .+++|+||||+||+++.++ .++++|||.+.........  .....|++.|+
T Consensus        95 ~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~--~~~~~~~~~~~  169 (257)
T cd08225          95 GVLFSEDQILSWFVQISLGLKHIHD---RKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMEL--AYTCVGTPYYL  169 (257)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEEcCCCCeEEecccccchhccCCccc--ccccCCCcccc
Confidence              47999999999999999999999   9999999999999998875 5699999998765432211  12234688999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |||.+....++.++|+||+|++++|+++|+.||....
T Consensus       170 ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  206 (257)
T cd08225         170 SPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNN  206 (257)
T ss_pred             CHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCcc
Confidence            9999988889999999999999999999999997543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.93  E-value=1.6e-25  Score=179.36  Aligned_cols=177  Identities=23%  Similarity=0.240  Sum_probs=132.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc--c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK--K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~--~   72 (202)
                      ||++++...+..++.|...............+..|.......+|++++.      .....+++++++. +++.....  .
T Consensus        37 v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~  115 (313)
T cd06633          37 VYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYCL-GSASDLLEVHK  115 (313)
T ss_pred             EEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEecCC-CCHHHHHHhcC
Confidence            5777777777777776544332222222234555666667777887653      3344567788775 45555543  3


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++.++..++.|++.|+.|||+   .+++|+||+|+||+++.++.++|+|||++.....      .....|+..|+||
T Consensus       116 ~~l~~~~~~~~~~qi~~al~~LH~---~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~------~~~~~~~~~y~aP  186 (313)
T cd06633         116 KPLQEVEIAAITHGALQGLAYLHS---HNMIHRDIKAGNILLTEPGQVKLADFGSASKSSP------ANSFVGTPYWMAP  186 (313)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCChhhEEECCCCCEEEeecCCCcccCC------CCCccccccccCh
Confidence            468999999999999999999999   9999999999999999999999999998864321      1234568899999


Q ss_pred             cccC---CCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWM---PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~---~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |++.   ...++.++|+||+|+++++|++|.+||....
T Consensus       187 E~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~  224 (313)
T cd06633         187 EVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  224 (313)
T ss_pred             hhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            9974   3568889999999999999999999987654

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.93  E-value=9e-26  Score=182.91  Aligned_cols=177  Identities=19%  Similarity=0.261  Sum_probs=134.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------cc------ccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SE------DTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~------~~~~~~~~~~~~~~l~~   68 (202)
                      ||++++..+++.++.|...... ........+..|.......+|++++.      ..      ....++++++ +++|..
T Consensus        31 vy~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~  108 (343)
T cd07851          31 VCSAFDTKTGRKVAIKKLSRPF-QSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQDVYLVTHLM-GADLNN  108 (343)
T ss_pred             EEEEEECCCCcEEEEEeccccc-chhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccccEEEEEecC-CCCHHH
Confidence            5788887777777777543321 11112233444555666667787642      11      1244555555 678988


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      ++....+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++......     .....++..
T Consensus       109 ~~~~~~l~~~~~~~~~~ql~~aL~~LH~---~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~-----~~~~~~~~~  180 (343)
T cd07851         109 IVKCQKLSDDHIQFLVYQILRGLKYIHS---AGIIHRDLKPSNIAVNEDCELKILDFGLARHTDDE-----MTGYVATRW  180 (343)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCEEEcccccccccccc-----ccCCccccc
Confidence            8888889999999999999999999999   99999999999999999999999999998765332     223356888


Q ss_pred             ccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          149 CEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       149 y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |+|||.+.+ ..++.++|+||+|++++++++|+.||....
T Consensus       181 y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~  220 (343)
T cd07851         181 YRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSD  220 (343)
T ss_pred             ccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence            999998865 367889999999999999999999997544

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.93  E-value=1.6e-25  Score=181.34  Aligned_cols=176  Identities=18%  Similarity=0.221  Sum_probs=129.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc------------cceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED------------TETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------~~~~~~~~~~~~~l~~   68 (202)
                      ||++++...++.++.|..+... ........+..|.......+|++++...+            ...++++++. .++..
T Consensus        31 v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~  108 (342)
T cd07879          31 VCSAIDKRTGEKVAIKKLSRPF-QSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQDFYLVMPYMQ-TDLQK  108 (342)
T ss_pred             EEEEEeCCCCcEEEEEEecCcc-ccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCceEEEEecccc-cCHHH
Confidence            5778877767777766543221 11112233455666677778888763221            1245555554 34544


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      +. ...+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++.....     .....+++.
T Consensus       109 ~~-~~~~~~~~~~~~~~qi~~aL~~LH~---~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~~-----~~~~~~~~~  179 (342)
T cd07879         109 IM-GHPLSEDKVQYLVYQMLCGLKYIHS---AGIIHRDLKPGNLAVNEDCELKILDFGLARHADAE-----MTGYVVTRW  179 (342)
T ss_pred             HH-cCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEeeCCCCcCCCCC-----CCCceeeec
Confidence            43 3468999999999999999999999   99999999999999999999999999998754321     123456888


Q ss_pred             ccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          149 CEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       149 y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |+|||.+.+ ..++.++|+||+|++++||++|+.||....
T Consensus       180 y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~  219 (342)
T cd07879         180 YRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD  219 (342)
T ss_pred             ccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999876 468899999999999999999999998654

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.93  E-value=1.1e-25  Score=179.82  Aligned_cols=177  Identities=22%  Similarity=0.253  Sum_probs=132.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh--cc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC--KK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~--~~   72 (202)
                      ||++++..++..++.|..............++..|.......+|++++.      ......++++++. +++....  ..
T Consensus        31 v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~  109 (308)
T cd06634          31 VYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCL-GSASDLLEVHK  109 (308)
T ss_pred             EEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEccC-CCHHHHHHHcC
Confidence            5778877777777766543221222222234555666667778887653      3345567888886 5665554  34


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.|+.|||+   .+++|+||+|+||+++.++.++++|||++......      ....+++.|+||
T Consensus       110 ~~l~~~~~~~~~~~l~~~l~~LH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~------~~~~~~~~y~aP  180 (308)
T cd06634         110 KPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA------NXFVGTPYWMAP  180 (308)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHhEEECCCCcEEECCcccceeecCc------ccccCCccccCH
Confidence            458999999999999999999999   99999999999999999999999999998764321      223468899999


Q ss_pred             cccC---CCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWM---PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~---~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |.+.   ...++.++|+||+||+++++++|+.||....
T Consensus       181 E~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~  218 (308)
T cd06634         181 EVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  218 (308)
T ss_pred             HHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCcccc
Confidence            9974   3457889999999999999999999986543

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.93  E-value=8.1e-26  Score=187.63  Aligned_cols=145  Identities=22%  Similarity=0.296  Sum_probs=119.5

Q ss_pred             HHHHhccccccc------cccccceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCC
Q 044746           37 RMIAADNFSNLV------GSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPE  110 (202)
Q Consensus        37 ~~~~~~~~~~~i------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~  110 (202)
                      ......+|+|++      ..+...+++++.+.++-+.......+....++..|+.+|+.|+.|||+   +|++||||||+
T Consensus       368 ~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~g~ell~ri~~~~~~~~e~~~w~~~lv~Av~~LH~---~gvvhRDLkp~  444 (612)
T KOG0603|consen  368 ISLLVRDHPNIVKSHDVYEDGKEIYLVMELLDGGELLRRIRSKPEFCSEASQWAAELVSAVDYLHE---QGVVHRDLKPG  444 (612)
T ss_pred             hhhhhcCCCcceeecceecCCceeeeeehhccccHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh---cCeeecCCChh
Confidence            445566778766      345556788888988877666655554448888999999999999999   99999999999


Q ss_pred             cEEE-cCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          111 SVLL-DENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       111 nil~-~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |||+ ++.++++|+|||.++.....     ....+-|..|.|||++....++.++|+||+|++||+|++|+.||.....+
T Consensus       445 NIL~~~~~g~lrltyFG~a~~~~~~-----~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~  519 (612)
T KOG0603|consen  445 NILLDGSAGHLRLTYFGFWSELERS-----CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG  519 (612)
T ss_pred             heeecCCCCcEEEEEechhhhCchh-----hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch
Confidence            9999 58999999999999876544     12223378899999999999999999999999999999999999876655

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=1.7e-25  Score=172.95  Aligned_cols=181  Identities=21%  Similarity=0.226  Sum_probs=139.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++...++.++.|........ ......+..|.......+|++++.      ......+++++.++++|..+... .
T Consensus        16 v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~   94 (254)
T cd06627          16 VYKGLNLETGDFVAIKQISLEKIK-EEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYAENGSLRQIIKKFG   94 (254)
T ss_pred             EEEEEEcCCCcEEEEEEecccccC-HHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEecCCCCcHHHHHHhcc
Confidence            467777766666666654433221 112234566666666667776542      34456688888999999887754 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++.........  .....++..|+|||
T Consensus        95 ~l~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~--~~~~~~~~~y~~pe  169 (254)
T cd06627          95 PFPESLVAVYVYQVLQGLAYLHE---QGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKD--DASVVGTPYWMAPE  169 (254)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCHHHEEECCCCCEEEeccccceecCCCccc--ccccccchhhcCHh
Confidence            68999999999999999999999   99999999999999999999999999999866443221  22345688999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ...+..++.++|+||+|++++++++|+.||....
T Consensus       170 ~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~  203 (254)
T cd06627         170 VIEMSGASTASDIWSLGCTVIELLTGNPPYYDLN  203 (254)
T ss_pred             hhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCcc
Confidence            9988778899999999999999999999997543

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.93  E-value=1.9e-25  Score=175.83  Aligned_cols=180  Identities=23%  Similarity=0.306  Sum_probs=129.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHH---Hhcccccccccc------c-----cceEEEEEccCCch
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMI---AADNFSNLVGSE------D-----TETYIKGFLAMGPF   66 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~------~-----~~~~~~~~~~~~~l   66 (202)
                      ||++++..++..++.|..+...... .....+..|....   ...+|++++..-      .     ...++++++. +++
T Consensus        15 v~~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~l~~e~~~-~~l   92 (287)
T cd07838          15 VYKARDLNTGRFVALKKVRVPLSEE-GIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLTLVFEHVD-QDL   92 (287)
T ss_pred             EEEEEECCCCCEEEEEEeccccccc-hhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCceeEEEehhcc-cCH
Confidence            5778887766677766554322211 1122233333222   223577655211      1     1445566665 466


Q ss_pred             hhhhcc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCC
Q 044746           67 YLLCKK---NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGR  143 (202)
Q Consensus        67 ~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~  143 (202)
                      ..++..   ..+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++.........   ...
T Consensus        93 ~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~---~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~~~~~~---~~~  166 (287)
T cd07838          93 ATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHS---HRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMAL---TSV  166 (287)
T ss_pred             HHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCChhhEEEccCCCEEEeccCcceeccCCccc---ccc
Confidence            665533   358999999999999999999999   99999999999999999999999999999875433221   223


Q ss_pred             CCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .++..|+|||.+.+..++.++|+||+|++++||++|++||.....
T Consensus       167 ~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~  211 (287)
T cd07838         167 VVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSE  211 (287)
T ss_pred             cccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCCh
Confidence            458889999999988899999999999999999999999986553

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.93  E-value=2.3e-25  Score=176.05  Aligned_cols=181  Identities=19%  Similarity=0.201  Sum_probs=131.8

Q ss_pred             CCccccC---CCcceeehhhhchhhh-hccCCcccCCcHHHHHHhc-cccccc------cccccceEEEEEccCCchhhh
Q 044746            1 MEKPRNR---GSTRFITRTIDKSLDA-MEMDKPIRFTSPQRMIAAD-NFSNLV------GSEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~---~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~i------~~~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++++.   ..+..++.|+.+.... ........+..|....... +|++++      ..+....++++++.+++|...
T Consensus        16 vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~   95 (288)
T cd05583          16 VFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLHLILDYVNGGELFTH   95 (288)
T ss_pred             EEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEEEEEecCCCCcHHHH
Confidence            4555432   2344555555433222 1122233444555555444 567654      234456688999999999887


Q ss_pred             hcc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           70 CKK-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        70 ~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      +.. ..+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++++|||++.......... .....|+..
T Consensus        96 ~~~~~~~~~~~~~~~~~ql~~~l~~lH~---~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~-~~~~~~~~~  171 (288)
T cd05583          96 LYQREHFTESEVRVYIAEIVLALDHLHQ---LGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEER-AYSFCGTIE  171 (288)
T ss_pred             HhhcCCcCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEEECccccccccccccc-cccccCCcc
Confidence            754 568999999999999999999999   999999999999999999999999999987654332211 123456889


Q ss_pred             ccCCcccCCCC--CCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          149 CEAPELWMPYS--VTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       149 y~aPe~~~~~~--~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      |+|||.+.+..  .+.++|+||+|++++||++|..||..
T Consensus       172 y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~  210 (288)
T cd05583         172 YMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTV  210 (288)
T ss_pred             ccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCccc
Confidence            99999987654  67899999999999999999999964

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.92  E-value=1.2e-25  Score=186.41  Aligned_cols=173  Identities=18%  Similarity=0.244  Sum_probs=144.7

Q ss_pred             ceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhccCC--CCHHHHHHH
Q 044746           11 RFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKKNI--LGFGQLREI   83 (202)
Q Consensus        11 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~   83 (202)
                      -.||+|.  .......++...|..|..+....+||+|+.     ...-.+++++....|.|..+++.++  ++......+
T Consensus       419 iaVAvKt--CK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~P~WivmEL~~~GELr~yLq~nk~sL~l~tL~ly  496 (974)
T KOG4257|consen  419 IAVAVKT--CKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQPMWIVMELAPLGELREYLQQNKDSLPLRTLTLY  496 (974)
T ss_pred             eeeeeeh--hccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeeccceeEEEecccchhHHHHHHhccccchHHHHHHH
Confidence            3344444  344455566777999999999999998764     3444679999999999999997654  888899999


Q ss_pred             HHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCch
Q 044746           84 EVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQK  163 (202)
Q Consensus        84 ~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~  163 (202)
                      +.||+.||.|||+   .+++||||..+|||+.+...+||+|||+++.+.+...+..+. ..-+..|||||.+.-..++.+
T Consensus       497 ~~Qi~talaYLeS---krfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYkaS~-~kLPIKWmaPESINfRrFTtA  572 (974)
T KOG4257|consen  497 CYQICTALAYLES---KRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYKASR-GKLPIKWMAPESINFRRFTTA  572 (974)
T ss_pred             HHHHHHHHHHHHh---hchhhhhhhhhheeecCcceeeecccchhhhccccchhhccc-cccceeecCccccchhcccch
Confidence            9999999999999   999999999999999999999999999999887765554443 344778999999999999999


Q ss_pred             hhHHHHHHHHHHHHc-CCCCCcchhcc
Q 044746          164 CDVFSFGMLLFEVVG-RRRNLEKEISE  189 (202)
Q Consensus       164 ~Diws~G~~l~el~~-g~~p~~~~~~~  189 (202)
                      +|||-||+++||++. |..||.+-.+.
T Consensus       573 SDVWMFgVCmWEIl~lGvkPfqgvkNs  599 (974)
T KOG4257|consen  573 SDVWMFGVCMWEILSLGVKPFQGVKNS  599 (974)
T ss_pred             hhHHHHHHHHHHHHHhcCCcccccccc
Confidence            999999999999875 99999876554

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.92  E-value=3.1e-25  Score=171.58  Aligned_cols=181  Identities=21%  Similarity=0.273  Sum_probs=138.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++.+..++..++.|........ .+....+..|.......+|++++.      .++...+++++.++++|...+..  
T Consensus        16 v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   94 (258)
T cd08215          16 VYLVRRKSDGKLYVLKEIDLSNMS-EKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQK   94 (258)
T ss_pred             EEEEEEcCCCcEEEEEEeecccCC-hHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEecCCCcHHHHHHHhh
Confidence            466666655556665554332111 122233555555666667777653      34566788899999999888754  


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           73 ---NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        73 ---~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                         ..+++..+..++.+++.||.|||+   .+++|+||+|+||+++.++.++++|||.+........  ......|++.|
T Consensus        95 ~~~~~~~~~~~~~i~~~i~~~l~~lh~---~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~y  169 (258)
T cd08215          95 KEGKPFPEEQILDWFVQLCLALKYLHS---RKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVD--LAKTVVGTPYY  169 (258)
T ss_pred             ccCCCcCHHHHHHHHHHHHHHHHHHHh---CCEecccCChHHeEEcCCCcEEECCccceeecccCcc--eecceeeeecc
Confidence               569999999999999999999999   8999999999999999999999999999986544321  12234568899


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +|||.+....++.++|+||+|++++++++|+.||....
T Consensus       170 ~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~  207 (258)
T cd08215         170 LSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGEN  207 (258)
T ss_pred             cChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCc
Confidence            99999988889999999999999999999999997653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.92  E-value=4.8e-25  Score=173.47  Aligned_cols=178  Identities=22%  Similarity=0.272  Sum_probs=130.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcc-ccccc------cccccceEEEEEccCCchhhhhccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADN-FSNLV------GSEDTETYIKGFLAMGPFYLLCKKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i------~~~~~~~~~~~~~~~~~l~~~~~~~   73 (202)
                      ||++.....++.++.|........  ........+.......+ |++++      -.++...++++++ ++++.......
T Consensus        15 v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~   91 (283)
T cd07830          15 VYLARNKETGELVAIKKMKKKFYS--WEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM-EGNLYQLMKDR   91 (283)
T ss_pred             EEEEEECCCCcEEEEEEehhhccc--hhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC-CCCHHHHHHhc
Confidence            577888777777766543221110  01111122333344444 77654      2355667888888 77887766543


Q ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 ---ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 ---~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                         .+++..+..++.|++.+|.|||+   ++++|+||+|+||+++.++.++|+|||++.........   ....++..|+
T Consensus        92 ~~~~~~~~~~~~~~~~l~~~l~~Lh~---~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~~---~~~~~~~~~~  165 (283)
T cd07830          92 KGKPFSESVIRSIIYQILQGLAHIHK---HGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPY---TDYVSTRWYR  165 (283)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEEcCCCCEEEeecccceeccCCCCc---CCCCCccccc
Confidence               68999999999999999999999   99999999999999999999999999999865432221   2234688899


Q ss_pred             CCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          151 APELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       151 aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |||.+.. ..++.++|+||||++++|+++|++||....
T Consensus       166 aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~  203 (283)
T cd07830         166 APEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSS  203 (283)
T ss_pred             CceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCC
Confidence            9998754 457889999999999999999999997654

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.92  E-value=2.8e-25  Score=176.36  Aligned_cols=177  Identities=19%  Similarity=0.262  Sum_probs=126.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcH-HHHHHhcccccccc------ccccceEEEEEccCCchhhhhc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSP-QRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK--   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~--   71 (202)
                      ||++.+...++.+++|..+.....  .....+..+ ..+....+|++++.      .+....++++++. +.+..+..  
T Consensus        31 v~~~~~~~~~~~~avK~~~~~~~~--~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~l~~~~  107 (296)
T cd06618          31 VYKMRFKKTGHVMAVKQMRRTGNK--EENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICMELMS-TCLDKLLKRI  107 (296)
T ss_pred             EEEEEECCCCeEEEEEEEeccCCh--HHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEeeccC-cCHHHHHHHh
Confidence            577788777777777765432111  111122222 23444445776653      3334556677764 34444443  


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                      ...+++..+..++.|++.|+.|||+.  .+++||||+|+||+++.++.++|+|||++.........   ....++..|+|
T Consensus       108 ~~~l~~~~~~~i~~~i~~~l~~lH~~--~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~~---~~~~~~~~y~a  182 (296)
T cd06618         108 QGPIPEDILGKMTVAIVKALHYLKEK--HGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAK---TRSAGCAAYMA  182 (296)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhh--CCEecCCCcHHHEEEcCCCCEEECccccchhccCCCcc---cCCCCCccccC
Confidence            24689999999999999999999971  59999999999999999999999999998765332221   22345788999


Q ss_pred             CcccCCCC----CCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          152 PELWMPYS----VTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       152 Pe~~~~~~----~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      ||.+.+..    ++.++|+||||+++++|++|+.||..
T Consensus       183 PE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~  220 (296)
T cd06618         183 PERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKN  220 (296)
T ss_pred             HhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCc
Confidence            99987543    78899999999999999999999975

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.92  E-value=3.8e-25  Score=193.11  Aligned_cols=126  Identities=19%  Similarity=0.283  Sum_probs=101.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++...++.||.|+.+............+..+.......+|++++.      .....+++++++.+++|..++.. +
T Consensus        20 Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVmEy~~g~~L~~li~~~~   99 (669)
T cd05610          20 VYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVMEYLIGGDVKSLLHIYG   99 (669)
T ss_pred             EEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEEeCCCCCCHHHHHHhcC
Confidence            6888998888889988765433222222344556666667778887663      34556788999999999888754 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecce
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK  129 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~  129 (202)
                      .+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.++|+|||+++
T Consensus       100 ~l~~~~~~~i~~qil~aL~yLH~---~gIiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610         100 YFDEEMAVKYISEVALALDYLHR---HGIIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            58999999999999999999999   899999999999999999999999999986

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=1.7e-25  Score=179.63  Aligned_cols=188  Identities=20%  Similarity=0.272  Sum_probs=147.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCccc----CCcHHHHHHhcccccccccccc-------ceEEEEEccCCchhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIR----FTSPQRMIAADNFSNLVGSEDT-------ETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~~~~~~l~~~   69 (202)
                      ||||-+....++||.|+-........++...    --.|..+-...+|+.|+...++       .+.+.+|+++..|.-+
T Consensus       479 VyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFCTVLEYceGNDLDFY  558 (775)
T KOG1151|consen  479 VYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFCTVLEYCEGNDLDFY  558 (775)
T ss_pred             HHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccceeeeeecCCCchhHH
Confidence            7999999999999999965554443333222    2344555566788887753332       3467899999999888


Q ss_pred             hccCC-CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc---CCCceEEeeeecceeccccCcccc-----c
Q 044746           70 CKKNI-LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD---ENFFPKAADFGLAKLYNREHTHIT-----S  140 (202)
Q Consensus        70 ~~~~~-~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~---~~~~~kl~dfgl~~~~~~~~~~~~-----~  140 (202)
                      ++.++ +++.+++.|..||..||.||... +.+|||-||||.|||+.   ..|.+||.|||+++.+..+.....     .
T Consensus       559 LKQhklmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLT  637 (775)
T KOG1151|consen  559 LKQHKLMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELT  637 (775)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeee
Confidence            87765 89999999999999999999974 58999999999999995   468899999999998865543321     2


Q ss_pred             CCCCCCCcccCCcccCCC----CCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          141 TGRRRTPGCEAPELWMPY----SVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       141 ~~~~gt~~y~aPe~~~~~----~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      ....||..|++||.+.-.    .++.++||||+|+++|+.+.|+.||..+..+
T Consensus       638 SQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQ  690 (775)
T KOG1151|consen  638 SQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQ  690 (775)
T ss_pred             cccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhH
Confidence            235689999999998643    4789999999999999999999999866554

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.92  E-value=8.7e-27  Score=176.11  Aligned_cols=181  Identities=25%  Similarity=0.280  Sum_probs=131.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh----
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC----   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~----   70 (202)
                      |+|-.++.+++..|+|--+.... +.+..+.+..-+......+-++|+.      ..+..+..++.|. -++..+.    
T Consensus        80 V~KM~hk~sg~~mAVKrIr~~n~-~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd-~SlDklYk~vy  157 (361)
T KOG1006|consen   80 VNKMLHKPSGKLMAVKRIRSNNI-EKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMD-ISLDKLYKRVY  157 (361)
T ss_pred             hhhhhcCccCcEEEEEEeeeccc-hHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHh-hhHHHHHHHHH
Confidence            56777888888888765444333 1222222333355566677788774      2334455555554 3333222    


Q ss_pred             --ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           71 --KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        71 --~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                        ++..+++.-.-.+..-...||.||-..  ..|||||+||+|||++..|.+||+|||.+..+....   ..+.-.|...
T Consensus       158 ~vq~~~ipE~Ilg~ItvatV~AL~yLK~~--lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~Si---AkT~daGCrp  232 (361)
T KOG1006|consen  158 SVQKSRIPENILGHITVATVDALDYLKEE--LKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSI---AKTVDAGCRP  232 (361)
T ss_pred             HHHhccCcHhhhhheeeeehhHHHHHHHH--hhhhhccCChhheEEecCCCEeeecccchHhHHHHH---HhhhccCCcc
Confidence              455688888888888889999999983  899999999999999999999999999987543322   2344567889


Q ss_pred             ccCCcccCC--CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          149 CEAPELWMP--YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       149 y~aPe~~~~--~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |||||-+..  ..|+.++|+||+|++|+|+.||+.|+.+-.+
T Consensus       233 YmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~s  274 (361)
T KOG1006|consen  233 YMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDS  274 (361)
T ss_pred             ccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHH
Confidence            999999864  3589999999999999999999999876544

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.92  E-value=1.9e-24  Score=168.17  Aligned_cols=149  Identities=21%  Similarity=0.320  Sum_probs=120.3

Q ss_pred             CCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-----cCCCCHHHHHHHHHHHHHHHHHHHhCCCC
Q 044746           32 FTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-----KNILGFGQLREIEVSTSKGIAYLHEECRQ  100 (202)
Q Consensus        32 ~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~  100 (202)
                      +..|.......+|++++.      ......++++++.+++|..++.     ...+++..+..++.|++.||.|||+   .
T Consensus        49 ~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~  125 (260)
T cd08222          49 ANQEAQLLSKLDHPAIVKFHASFLERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQ---R  125 (260)
T ss_pred             HHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHH---c
Confidence            444555666778888763      3344568899999999987663     3569999999999999999999999   9


Q ss_pred             CeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCC
Q 044746          101 KIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR  180 (202)
Q Consensus       101 ~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~  180 (202)
                      +++|+||+|+||+++. +.++++|||++........  ......|++.|+|||.+.+..++.++|+||+|++++++++|.
T Consensus       126 ~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~  202 (260)
T cd08222         126 RILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGSCD--LATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLA  202 (260)
T ss_pred             CccccCCChhheEeec-CCEeecccCceeecCCCcc--cccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCC
Confidence            9999999999999975 5699999999876533221  122345688999999998888899999999999999999999


Q ss_pred             CCCcch
Q 044746          181 RNLEKE  186 (202)
Q Consensus       181 ~p~~~~  186 (202)
                      .||...
T Consensus       203 ~~~~~~  208 (260)
T cd08222         203 HAFEGQ  208 (260)
T ss_pred             CCCCCc
Confidence            999643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.91  E-value=7.3e-25  Score=187.64  Aligned_cols=132  Identities=18%  Similarity=0.213  Sum_probs=101.2

Q ss_pred             ccccceEEEEEccCCchhhhhccCCCC---------------------HHHHHHHHHHHHHHHHHHHhCCCCCeEEecCC
Q 044746           50 SEDTETYIKGFLAMGPFYLLCKKNILG---------------------FGQLREIEVSTSKGIAYLHEECRQKIVHYDIK  108 (202)
Q Consensus        50 ~~~~~~~~~~~~~~~~l~~~~~~~~~~---------------------~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk  108 (202)
                      .+....++++|..+++|..++....++                     ...+..++.|++.||.|||+   ++|+|||||
T Consensus       206 ~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~---~gIiHRDLK  282 (566)
T PLN03225        206 KEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHS---TGIVHRDVK  282 (566)
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHH---CCEEeCcCC
Confidence            445677899999999998887544321                     23456799999999999999   999999999


Q ss_pred             CCcEEEcC-CCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCC----------------------CCCchhh
Q 044746          109 PESVLLDE-NFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPY----------------------SVTQKCD  165 (202)
Q Consensus       109 ~~nil~~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~----------------------~~~~~~D  165 (202)
                      |+|||++. ++.+||+|||+++........ ......+++.|+|||.+...                      .++.++|
T Consensus       283 P~NILl~~~~~~~KL~DFGlA~~l~~~~~~-~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~D  361 (566)
T PLN03225        283 PQNIIFSEGSGSFKIIDLGAAADLRVGINY-IPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFD  361 (566)
T ss_pred             HHHEEEeCCCCcEEEEeCCCcccccccccc-CCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcc
Confidence            99999985 579999999999865332221 12335678999999965321                      2345679


Q ss_pred             HHHHHHHHHHHHcCCCCCcc
Q 044746          166 VFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       166 iws~G~~l~el~~g~~p~~~  185 (202)
                      |||+||++|||+++..|++.
T Consensus       362 VwSlGviL~el~~~~~~~~~  381 (566)
T PLN03225        362 IYSAGLIFLQMAFPNLRSDS  381 (566)
T ss_pred             cHHHHHHHHHHHhCcCCCch
Confidence            99999999999998776554

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-24  Score=188.10  Aligned_cols=173  Identities=23%  Similarity=0.266  Sum_probs=136.2

Q ss_pred             cceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc---c---ccccceEEEEEccCCchhhhhccCC---------
Q 044746           10 TRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV---G---SEDTETYIKGFLAMGPFYLLCKKNI---------   74 (202)
Q Consensus        10 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~---~~~~~~~~~~~~~~~~l~~~~~~~~---------   74 (202)
                      ...||+|+.+..... .+..........+.....|+|++   |   ..+...++.++.+.|+|..++...+         
T Consensus       328 ~~~VaVK~~k~~~~~-~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~  406 (609)
T KOG0200|consen  328 YVTVAVKMLKENASS-SEKKDLMSELNVLKELGKHPNIVNLLGACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSG  406 (609)
T ss_pred             eEEEEEEecccccCc-HHHHHHHHHHHHHHHhcCCcchhhheeeeccCCceEEEEEeccCCcHHHHHHhccccccccccC
Confidence            556777766555443 22223334445566667788765   4   4455778999999999999997766         


Q ss_pred             --------CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccccc-CCCCC
Q 044746           75 --------LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITS-TGRRR  145 (202)
Q Consensus        75 --------~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~-~~~~g  145 (202)
                              ++..+...++.||+.|++||++   .+++||||-.+|||+..+..+|++|||+++........... ....-
T Consensus       407 ~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~---~~~vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~L  483 (609)
T KOG0200|consen  407 VFPNERDALTTKDLLSFAYQIANGMEYLAS---VPCVHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTL  483 (609)
T ss_pred             CCccccCCcCHHHHHHHHHHHHHHHHHHhh---CCccchhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCcc
Confidence                    9999999999999999999999   89999999999999999999999999999965443333221 11113


Q ss_pred             CCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcch
Q 044746          146 TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKE  186 (202)
Q Consensus       146 t~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~  186 (202)
                      +..|||||.+....|+.++||||||++|||++| |..|+.+.
T Consensus       484 P~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~  525 (609)
T KOG0200|consen  484 PVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGI  525 (609)
T ss_pred             ceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCC
Confidence            567999999999999999999999999999998 89999863

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.91  E-value=7.5e-25  Score=181.98  Aligned_cols=177  Identities=21%  Similarity=0.258  Sum_probs=139.6

Q ss_pred             ccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc------ccceEEEEEccCCchhhhhc---cC
Q 044746            3 KPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE------DTETYIKGFLAMGPFYLLCK---KN   73 (202)
Q Consensus         3 k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~~~~~~~~~~~~~l~~~~~---~~   73 (202)
                      ....+.-.--||+|..+...   + ...+|..|..++....|+|++.-.      .-.+++.+||.+|+|++++.   +.
T Consensus       285 eGvWKkyslTvAVKtLKEDt---M-eveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIiTEfM~yGNLLdYLRecnr~  360 (1157)
T KOG4278|consen  285 EGVWKKYSLTVAVKTLKEDT---M-EVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYIITEFMCYGNLLDYLRECNRS  360 (1157)
T ss_pred             eeeeeccceeeehhhhhhcc---h-hHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEEEecccCccHHHHHHHhchh
Confidence            33333334445665544332   2 234688888888889999876433      33458899999999999884   34


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .++.-..+.++.||.+|++||..   +++|||||...|+|+..+..+|++||||++++..+.+.... +..=...|.|||
T Consensus       361 ev~avvLlyMAtQIsSaMeYLEk---knFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTAHA-GAKFPIKWTAPE  436 (1157)
T KOG4278|consen  361 EVPAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTAHA-GAKFPIKWTAPE  436 (1157)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHH---hhhhhhhhhhhhccccccceEEeeccchhhhhcCCceeccc-CccCcccccCcc
Confidence            47777889999999999999999   99999999999999999999999999999998765544332 222367899999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      -+....++.|+|||+||++|||+.| |..|+.+.+
T Consensus       437 sLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGid  471 (1157)
T KOG4278|consen  437 SLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGID  471 (1157)
T ss_pred             cccccccccchhhHHHHHHHHHHHhcCCCCCCCcc
Confidence            9999999999999999999999998 999987654

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.91  E-value=2.1e-25  Score=183.75  Aligned_cols=175  Identities=21%  Similarity=0.234  Sum_probs=141.7

Q ss_pred             cceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc------cccceEEEEEccCCchhhhhccCCC---CHHHH
Q 044746           10 TRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS------EDTETYIKGFLAMGPFYLLCKKNIL---GFGQL   80 (202)
Q Consensus        10 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~   80 (202)
                      ...||+|..+.....  .....|..|..++....||||+.-      .+-...+++|+++|.|.+++..+..   .-...
T Consensus       562 ~lkVAVK~Lr~~a~~--~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmEnGDLnqFl~aheapt~~t~~~  639 (807)
T KOG1094|consen  562 PLKVAVKILRPDATK--NARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYMENGDLNQFLSAHELPTAETAPG  639 (807)
T ss_pred             ceEEEEeecCcccch--hHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHhcCcHHHHHHhccCcccccchh
Confidence            456777766554332  234679999999999999998743      4445689999999999999977632   44567


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCC
Q 044746           81 REIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSV  160 (202)
Q Consensus        81 ~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~  160 (202)
                      .+++.||++|++||.+   .+++|||+.+.|+|++.++++|++|||+++.+-...++.......-+.+|||+|.+.-+.+
T Consensus       640 vsi~tqiasgmaYLes---~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgkF  716 (807)
T KOG1094|consen  640 VSICTQIASGMAYLES---LNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGKF  716 (807)
T ss_pred             HHHHHHHHHHHHHHHh---hchhhccccccceeecCcccEEecCcccccccccCCceeeecceeeeeeehhHHHHHhccc
Confidence            8899999999999999   8999999999999999999999999999995444444444344455789999999999999


Q ss_pred             CchhhHHHHHHHHHHHHc--CCCCCcchhcc
Q 044746          161 TQKCDVFSFGMLLFEVVG--RRRNLEKEISE  189 (202)
Q Consensus       161 ~~~~Diws~G~~l~el~~--g~~p~~~~~~~  189 (202)
                      ++++|+|+||+++||+++  .+.||....++
T Consensus       717 ttaSDvWafgvTlwE~~~~C~e~Py~~lt~e  747 (807)
T KOG1094|consen  717 TTASDVWAFGVTLWEVFMLCREQPYSQLTDE  747 (807)
T ss_pred             cchhhhhhhHHHHHHHHHHHhhCchhhhhHH
Confidence            999999999999999876  78898876655

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-26  Score=176.48  Aligned_cols=185  Identities=21%  Similarity=0.273  Sum_probs=130.6

Q ss_pred             CccccCCCcceeeh-hhhchhhhhccCCcccCCcHHHHHHhccccccccccc-----------cceEEEEEccCCchhh-
Q 044746            2 EKPRNRGSTRFITR-TIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED-----------TETYIKGFLAMGPFYL-   68 (202)
Q Consensus         2 ~k~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~~~~~~~l~~-   68 (202)
                      |-..+-++++.|+. |+.....  +.....++..|..++....|.|++...+           ..+++.+.+.. .|.. 
T Consensus        70 WsVTDPRdgrrvalkK~pnvfq--~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~TELmQS-DLHKI  146 (449)
T KOG0664|consen   70 WSVTDPRSGKRVALKKMPNVFQ--NLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVLTELMQS-DLHKI  146 (449)
T ss_pred             EeccCCCCccchhHhhcchHHH--HHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHHHHHHHh-hhhhe
Confidence            44455555555554 3322221  1223455667777777778887763221           12233444332 3333 


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      +..-..++.+.++-+..||++||.|||+   .+|+||||||.|.|+.++..+|++|||+++....+.... .+...-|-.
T Consensus       147 IVSPQ~Ls~DHvKVFlYQILRGLKYLHs---A~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~~h-MTqEVVTQY  222 (449)
T KOG0664|consen  147 IVSPQALTPDHVKVFVYQILRGLKYLHT---ANILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDRLN-MTHEVVTQY  222 (449)
T ss_pred             eccCCCCCcchhhhhHHHHHhhhHHHhh---cchhhccCCCccEEeccCceEEecccccccccchhhhhh-hHHHHHHHH
Confidence            3345568999999999999999999999   899999999999999999999999999999654332222 222333778


Q ss_pred             ccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhcccccc
Q 044746          149 CEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEW  193 (202)
Q Consensus       149 y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~~~~  193 (202)
                      |.|||++++. .|+...||||.||++.|++.++-.|...++-.+..
T Consensus       223 YRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~  268 (449)
T KOG0664|consen  223 YRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQ  268 (449)
T ss_pred             hccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHHHHH
Confidence            9999999875 69999999999999999999998888777655533

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.90  E-value=4.6e-25  Score=187.51  Aligned_cols=170  Identities=22%  Similarity=0.313  Sum_probs=144.3

Q ss_pred             hhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhcc--CCCCHHHHHHHHHHHHHHHH
Q 044746           20 SLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKK--NILGFGQLREIEVSTSKGIA   92 (202)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~i~~~l~   92 (202)
                      ..+....+...++..|...++..+|+|++.     ..++..++..+++.|.|.++.+.  .++.....+.|+.||++|+.
T Consensus       733 l~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~~qlvtq~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~  812 (1177)
T KOG1025|consen  733 LIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLSTLQLVTQLMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMK  812 (1177)
T ss_pred             eeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccchHHHHHHhcccchHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence            333445556778999999999999998764     34446688899999999998854  56999999999999999999


Q ss_pred             HHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHH
Q 044746           93 YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGML  172 (202)
Q Consensus        93 ~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~  172 (202)
                      |||.   ++++||||..+|+|+.....+|+.|||+++....+..........-.+.|||-|.+....|+.++|||||||+
T Consensus       813 YLe~---qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVt  889 (1177)
T KOG1025|consen  813 YLEE---QRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVT  889 (1177)
T ss_pred             HHHh---cchhhhhhhhhheeecCCCeEEEEecchhhccCcccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhh
Confidence            9998   9999999999999999999999999999998766554444444445788999999999999999999999999


Q ss_pred             HHHHHc-CCCCCcchhccccc
Q 044746          173 LFEVVG-RRRNLEKEISEGQE  192 (202)
Q Consensus       173 l~el~~-g~~p~~~~~~~~~~  192 (202)
                      +||++| |..|+++...++..
T Consensus       890 iWElmTFGa~Py~gi~~~eI~  910 (1177)
T KOG1025|consen  890 IWELMTFGAKPYDGIPAEEIP  910 (1177)
T ss_pred             HHHHHhcCCCccCCCCHHHhh
Confidence            999998 99999988776543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.90  E-value=4.5e-24  Score=189.85  Aligned_cols=123  Identities=15%  Similarity=0.095  Sum_probs=95.7

Q ss_pred             ccCCchhhhhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC-------------------Cc
Q 044746           61 LAMGPFYLLCKK--NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN-------------------FF  119 (202)
Q Consensus        61 ~~~~~l~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~-------------------~~  119 (202)
                      ..+++|..++..  ..+++.+++.++.||+.||.|||+   ++|+||||||+|||++..                   +.
T Consensus        61 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~---~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~  137 (793)
T PLN00181         61 CEDVSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHS---QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDAT  137 (793)
T ss_pred             cCCccHHHHHhcccccccHHHHHHHHHHHHHHHHHHHh---CCeeeccCCchhEEEcccCcEEEeeccccCcccccccCc
Confidence            446789888854  359999999999999999999999   999999999999999654                   44


Q ss_pred             eEEeeeecceeccccCc--------------ccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          120 PKAADFGLAKLYNREHT--------------HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       120 ~kl~dfgl~~~~~~~~~--------------~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      +|++|||+++.......              ........||+.|+|||++.+..++.++|||||||++|||++|.+|+..
T Consensus       138 ~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~  217 (793)
T PLN00181        138 TKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREE  217 (793)
T ss_pred             ccccccccccccccccccchhhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhh
Confidence            55666666653211000              0001113578899999999998999999999999999999999999764


Q ss_pred             h
Q 044746          186 E  186 (202)
Q Consensus       186 ~  186 (202)
                      .
T Consensus       218 ~  218 (793)
T PLN00181        218 K  218 (793)
T ss_pred             H
Confidence            3

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.90  E-value=1.2e-23  Score=160.86  Aligned_cols=177  Identities=25%  Similarity=0.353  Sum_probs=139.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++....+++.++.|+.........  ...+..|.......+|++++.      ......+++++..+++|..++....
T Consensus         5 v~~~~~~~~~~~~~~k~~~~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~~   82 (244)
T smart00220        5 VYLARDKKTGKLVAIKVIKKEKIKKK--RERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKKRG   82 (244)
T ss_pred             EEEEEECCCCcEEEEEEecccccccH--HHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHhcc
Confidence            57788877666666666433222111  345566666666667776652      2244567888899989988886555


Q ss_pred             -CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           75 -LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        75 -~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                       +++..+..++.+++.++.+||+   .+++|+|++|.||+++.++.++++|||.+.......   ......++..|++||
T Consensus        83 ~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~---~~~~~~~~~~~~~pE  156 (244)
T smart00220       83 RLSEDEARFYARQILSALEYLHS---NGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGG---LLTTFVGTPEYMAPE  156 (244)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---cCeecCCcCHHHeEECCCCcEEEccccceeeecccc---ccccccCCcCCCCHH
Confidence             8999999999999999999999   899999999999999999999999999998654432   123345688999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      .+....++.++|+||+|++++++++|..||..
T Consensus       157 ~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~  188 (244)
T smart00220      157 VLLGKGYGKAVDVWSLGVILYELLTGKPPFPG  188 (244)
T ss_pred             HHccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            99888889999999999999999999999976

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.90  E-value=1.4e-23  Score=154.48  Aligned_cols=106  Identities=23%  Similarity=0.262  Sum_probs=91.5

Q ss_pred             Cchhhhhc--cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccC
Q 044746           64 GPFYLLCK--KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST  141 (202)
Q Consensus        64 ~~l~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~  141 (202)
                      |+|.+++.  ...+++.++..++.|++.||.|||+   .+      ||+||+++.++.+++  ||++.......      
T Consensus         1 GsL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH~---~~------kp~Nil~~~~~~~~~--fG~~~~~~~~~------   63 (176)
T smart00750        1 VSLADILEVRGRPLNEEEIWAVCLQCLRALRELHR---QA------KSGNILLTWDGLLKL--DGSVAFKTPEQ------   63 (176)
T ss_pred             CcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh---cC------CcccEeEcCccceee--ccceEeecccc------
Confidence            46777775  3459999999999999999999998   55      999999999999999  99988654321      


Q ss_pred             CCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       142 ~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                       ..||+.|+|||++.+..++.++||||+||++|||++|+.||....
T Consensus        64 -~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~  108 (176)
T smart00750       64 -SRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEER  108 (176)
T ss_pred             -CCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccc
Confidence             246899999999999999999999999999999999999997543

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.90  E-value=2.5e-24  Score=166.26  Aligned_cols=155  Identities=19%  Similarity=0.246  Sum_probs=122.2

Q ss_pred             cCCcccCCcHHHHHHhccccccccccccce------------EEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHH
Q 044746           26 MDKPIRFTSPQRMIAADNFSNLVGSEDTET------------YIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAY   93 (202)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~   93 (202)
                      ....++-..|.......+|+|+++-.+..+            ++++++. .++..... -.+.-...+.+..|++.|++|
T Consensus        56 ~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v~e~m~-~nl~~vi~-~elDH~tis~i~yq~~~~ik~  133 (369)
T KOG0665|consen   56 QTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYLVMELMD-ANLCQVIL-MELDHETISYILYQMLCGIKH  133 (369)
T ss_pred             CccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHHHHHhhh-hHHHHHHH-HhcchHHHHHHHHHHHHHHHH
Confidence            445566777788888889999886433322            2233332 34444333 456778899999999999999


Q ss_pred             HHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHH
Q 044746           94 LHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLL  173 (202)
Q Consensus        94 lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l  173 (202)
                      ||+   .+|+||||||+||++..+..+|+.|||+++..+..   ...+....|..|.|||++.+.++...+||||+||++
T Consensus       134 lhs---~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~---~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~  207 (369)
T KOG0665|consen  134 LHS---AGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTD---FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM  207 (369)
T ss_pred             HHh---cceeecccCcccceecchhheeeccchhhcccCcc---cccCchhheeeccCchheeccCCcccchhhhhhhHH
Confidence            999   99999999999999999999999999999865433   234555668899999999998899999999999999


Q ss_pred             HHHHcCCCCCcchhc
Q 044746          174 FEVVGRRRNLEKEIS  188 (202)
Q Consensus       174 ~el~~g~~p~~~~~~  188 (202)
                      .||++|+--|.+...
T Consensus       208 gEli~~~Vlf~g~d~  222 (369)
T KOG0665|consen  208 GELILGTVLFPGKDH  222 (369)
T ss_pred             HHHhhceEEecCchH
Confidence            999999999885443

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.90  E-value=6.8e-24  Score=157.64  Aligned_cols=174  Identities=20%  Similarity=0.247  Sum_probs=132.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcc-cccccc--------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADN-FSNLVG--------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~--------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||.+++..+++-++.|+.+.-.      ...+..|..++.... ++|++.        ......++.++.++..+..+..
T Consensus        54 VFeg~~~~~~eK~ViKiLKPVk------kkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~v~n~Dfk~ly~  127 (338)
T KOG0668|consen   54 VFEGINITNNEKCVIKILKPVK------KKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFEYVNNTDFKQLYP  127 (338)
T ss_pred             HhcccccCCCceEEEeeechHH------HHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhhhhccccHHHHhh
Confidence            4566666777777777654432      234556666665544 788774        3334457788888877665553


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC-CCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE-NFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                        .++..+++.++.+++.||.||||   +||+|||+||.|++++. ...++|+|.|+|.........   ..+..+..|-
T Consensus       128 --tl~d~dIryY~~elLkALdyCHS---~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eY---nVRVASRyfK  199 (338)
T KOG0668|consen  128 --TLTDYDIRYYIYELLKALDYCHS---MGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEY---NVRVASRYFK  199 (338)
T ss_pred             --hhchhhHHHHHHHHHHHHhHHHh---cCcccccCCcceeeechhhceeeeeecchHhhcCCCcee---eeeeehhhcC
Confidence              47778899999999999999999   99999999999999985 467899999999977554433   3334477888


Q ss_pred             CCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          151 APELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .||++... .|+..-|+|||||++..|+..+.||....+
T Consensus       200 GPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~d  238 (338)
T KOG0668|consen  200 GPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHD  238 (338)
T ss_pred             CchheeechhccccHHHHHHHHHHHHHHhccCcccCCCC
Confidence            99998764 588999999999999999999999875544

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.89  E-value=5.6e-24  Score=178.47  Aligned_cols=176  Identities=16%  Similarity=0.200  Sum_probs=142.3

Q ss_pred             CCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccccce-----EEEEEccCCchhhhhcc---CCCCHHH
Q 044746            8 GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET-----YIKGFLAMGPFYLLCKK---NILGFGQ   79 (202)
Q Consensus         8 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~l~~~~~~---~~~~~~~   79 (202)
                      +...-||+|+.+......  ....|..|..++....|+++|.-.+...     .++|..+.|+|.+.+.+   ..|....
T Consensus       136 gk~V~VAVKclr~d~l~~--~mddflrEas~M~~L~H~hliRLyGvVl~qp~mMV~ELaplGSLldrLrka~~~~llv~~  213 (1039)
T KOG0199|consen  136 GKHVNVAVKCLRDDSLNA--IMDDFLREASHMLKLQHPHLIRLYGVVLDQPAMMVFELAPLGSLLDRLRKAKKAILLVSR  213 (1039)
T ss_pred             CcEEeEEEEeccCCccch--hHHHHHHHHHHHHhccCcceeEEeeeeccchhhHHhhhcccchHHHHHhhccccceeHHH
Confidence            344556777665544332  4557889999999999999987655433     67788899999988865   3478888


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccccc-CCCCCCCcccCCcccCCC
Q 044746           80 LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITS-TGRRRTPGCEAPELWMPY  158 (202)
Q Consensus        80 ~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~-~~~~gt~~y~aPe~~~~~  158 (202)
                      .-.++.||+.|+.||.+   +++|||||...|+|+.....+||+||||.+.+......... ....-...|.|||.+...
T Consensus       214 Lcdya~QiA~aM~YLes---krlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~  290 (1039)
T KOG0199|consen  214 LCDYAMQIAKAMQYLES---KRLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHR  290 (1039)
T ss_pred             HHHHHHHHHHHHHHHhh---hhhhhhhhhhhhheecccceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccc
Confidence            99999999999999999   99999999999999999999999999999977644333332 223346789999999999


Q ss_pred             CCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          159 SVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       159 ~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      .|+.++|+|+|||++|||+| |+.||.+...
T Consensus       291 kFShaSDvWmyGVTiWEMFtyGEePW~G~~g  321 (1039)
T KOG0199|consen  291 KFSHASDVWMYGVTIWEMFTYGEEPWVGCRG  321 (1039)
T ss_pred             cccccchhhhhhhhHHhhhccCCCCCCCCCH
Confidence            99999999999999999998 8999987543

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.89  E-value=2.2e-24  Score=163.60  Aligned_cols=179  Identities=17%  Similarity=0.260  Sum_probs=132.4

Q ss_pred             ccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-cccccc-------cccccceEEEEEccCCchhhhhccCC
Q 044746            3 KPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLV-------GSEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         3 k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i-------~~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      .++++.+...++.|.-......    ...|..|..-.... .|.+|+       ..-++-.+.+++.+.|+|..-.....
T Consensus        42 L~eHr~s~t~ivlKavp~p~tt----~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE~aP~gdL~snv~~~G  117 (378)
T KOG1345|consen   42 LAEHRQSKTRIVLKAVPRPQTT----QADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQEFAPRGDLRSNVEAAG  117 (378)
T ss_pred             eeeccCCceEEEeeccCcchhh----HHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeeccCccchhhhhcCccc
Confidence            4677888887777654333222    23444444433332 223444       34455667899999999999888888


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc--CCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD--ENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~--~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      +.+...+.++.|+++|++|||+   .+++|||||.+|||+-  ....+||+|||+.+..+.....     ...+..|-+|
T Consensus       118 igE~~~K~v~~ql~SAi~fMHs---knlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV~~-----~~~~~~y~~p  189 (378)
T KOG1345|consen  118 IGEANTKKVFAQLLSAIEFMHS---KNLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTTVKY-----LEYVNNYHAP  189 (378)
T ss_pred             ccHHHHHHHHHHHHHHHHHhhc---cchhhcccccceEEEecCCccEEEeeecccccccCceehh-----hhhhcccCCc
Confidence            9999999999999999999999   9999999999999994  3468999999998765432221     1225568899


Q ss_pred             cccCCC-----CCCchhhHHHHHHHHHHHHcCCCCCcchhcccccc
Q 044746          153 ELWMPY-----SVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEW  193 (202)
Q Consensus       153 e~~~~~-----~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~~~~  193 (202)
                      |.+...     ...+..|+|.||++++..+||.+||.....+++.+
T Consensus       190 e~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y  235 (378)
T KOG1345|consen  190 ELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPY  235 (378)
T ss_pred             HHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccCchH
Confidence            987532     34577899999999999999999999777777644

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.89  E-value=9.9e-23  Score=154.51  Aligned_cols=179  Identities=23%  Similarity=0.331  Sum_probs=132.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++.....++.++.|........  .....+..|.......++++++.      ......+++++..+++|..+.....
T Consensus        15 v~~~~~~~~~~~~~iK~~~~~~~~--~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~   92 (225)
T smart00221       15 VYLARDKGTGELVAVKVLKKEKTE--KQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCEGGDLFDYLRKKG   92 (225)
T ss_pred             EEEEEEcCCCcEEEEEeeccccch--HHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccCCCCHHHHHHhcc
Confidence            466666665555555543322111  12233444544445556666542      2345668888999889998886654


Q ss_pred             --CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           75 --LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        75 --~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                        +++.....++.+++.++.+||+   .+++|+|++|.|++++.++.++++|||.+......... ......++..|++|
T Consensus        93 ~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~-~~~~~~~~~~~~~p  168 (225)
T smart00221       93 GKLSEEEARFYLRQILEALEYLHS---LGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAA-LLKTVKGTPFYLAP  168 (225)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCcccc-cccceeccCCcCCH
Confidence              8999999999999999999999   89999999999999999999999999999876443200 11233457789999


Q ss_pred             ccc-CCCCCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          153 ELW-MPYSVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       153 e~~-~~~~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      |.+ ....++.++|+|++|++++++++|+.||..
T Consensus       169 e~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      169 EVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             hHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            998 666788899999999999999999999966

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.88  E-value=4.8e-23  Score=169.72  Aligned_cols=178  Identities=21%  Similarity=0.195  Sum_probs=136.2

Q ss_pred             CCccccCCCcceeehhhhchhhhh-----ccCCcccCCcHHHHHHhcc---cccccccc----ccceEEEEEcc---CCc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAM-----EMDKPIRFTSPQRMIAADN---FSNLVGSE----DTETYIKGFLA---MGP   65 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~i~~~----~~~~~~~~~~~---~~~   65 (202)
                      |+.|.++.....|+.|+-.+.+-.     ...+.-....|..++++.+   |+||+.--    +..++|.+.-.   +-.
T Consensus       577 V~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEddd~yyl~te~hg~gID  656 (772)
T KOG1152|consen  577 VNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFEDDDYYYLETEVHGEGID  656 (772)
T ss_pred             EEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeecCCeeEEEecCCCCCcc
Confidence            455666666666666654333321     2334556788988888887   88887522    22334444332   336


Q ss_pred             hhhhhccC-CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCC
Q 044746           66 FYLLCKKN-ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRR  144 (202)
Q Consensus        66 l~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~  144 (202)
                      |++++... .+++.+++-|++|++.|+++||+   .+|+|||+|-+|+.++++|.+||+|||.+........    ....
T Consensus       657 LFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~---~~ivhrdikdenvivd~~g~~klidfgsaa~~ksgpf----d~f~  729 (772)
T KOG1152|consen  657 LFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHD---QGIVHRDIKDENVIVDSNGFVKLIDFGSAAYTKSGPF----DVFV  729 (772)
T ss_pred             hhhhhhccCccchHHHHHHHHHHHhccccccc---cCceecccccccEEEecCCeEEEeeccchhhhcCCCc----ceee
Confidence            78888665 59999999999999999999999   9999999999999999999999999999876544332    3457


Q ss_pred             CCCcccCCcccCCCCCC-chhhHHHHHHHHHHHHcCCCCCcc
Q 044746          145 RTPGCEAPELWMPYSVT-QKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       145 gt~~y~aPe~~~~~~~~-~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      ||..|.|||++.+..|- ..-|||++|++||.++..+.||..
T Consensus       730 gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyyn  771 (772)
T KOG1152|consen  730 GTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYYN  771 (772)
T ss_pred             eeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCcC
Confidence            89999999999998775 448999999999999999999863

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=1.4e-22  Score=178.11  Aligned_cols=122  Identities=27%  Similarity=0.367  Sum_probs=103.3

Q ss_pred             cceEEEEEccCCchhhhhccCCCC--HHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746           53 TETYIKGFLAMGPFYLLCKKNILG--FGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus        53 ~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..++-|+|++...+..++..+.+.  ....-+++++|++||.|+|+   .++|||||||.||+++.+..+||+|||++..
T Consensus       670 ~LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH~---~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~  746 (1351)
T KOG1035|consen  670 ILYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIHD---QGIIHRDLKPRNIFLDSRNSVKIGDFGLATD  746 (1351)
T ss_pred             EEEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHh---CceeeccCCcceeEEcCCCCeeecccccchh
Confidence            345668889999999999888775  77889999999999999999   9999999999999999999999999999986


Q ss_pred             cc----------------ccCcccccCCCCCCCcccCCcccCCCC---CCchhhHHHHHHHHHHHH
Q 044746          131 YN----------------REHTHITSTGRRRTPGCEAPELWMPYS---VTQKCDVFSFGMLLFEVV  177 (202)
Q Consensus       131 ~~----------------~~~~~~~~~~~~gt~~y~aPe~~~~~~---~~~~~Diws~G~~l~el~  177 (202)
                      ..                ........++..||--|+|||++.+..   |+.|+|+||+|++++||+
T Consensus       747 ~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~  812 (1351)
T KOG1035|consen  747 LKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEML  812 (1351)
T ss_pred             hhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHh
Confidence            21                011111345678999999999998654   999999999999999986

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.86  E-value=8.3e-23  Score=166.68  Aligned_cols=182  Identities=18%  Similarity=0.211  Sum_probs=130.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcc---cc-----ccccccccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADN---FS-----NLVGSEDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~i~~~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      |-+|++...++.||+||-+..+........++.....+.....   |.     ...-.....+++.+-+. -+|..++++
T Consensus       448 Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLClVFE~Ls-lNLRevLKK  526 (752)
T KOG0670|consen  448 VVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLCLVFEPLS-LNLREVLKK  526 (752)
T ss_pred             eeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeEEEehhhh-chHHHHHHH
Confidence            5688999999999999987776655444443332222221110   00     11122333345555443 245555543


Q ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC-CCceEEeeeecceeccccCcccccCCCCCCC
Q 044746           73 N----ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE-NFFPKAADFGLAKLYNREHTHITSTGRRRTP  147 (202)
Q Consensus        73 ~----~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~  147 (202)
                      .    .+....++.++.|+..||..|-.   .+|+|.||||+|||+.. ...+||||||.|...+...-    +...-+.
T Consensus       527 yG~nvGL~ikaVRsYaqQLflALklLK~---c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~enei----tPYLVSR  599 (752)
T KOG0670|consen  527 YGRNVGLHIKAVRSYAQQLFLALKLLKK---CGVLHADIKPDNILVNESKNILKLCDFGSASFASENEI----TPYLVSR  599 (752)
T ss_pred             hCcccceeehHHHHHHHHHHHHHHHHHh---cCeeecccCccceEeccCcceeeeccCccccccccccc----cHHHHHH
Confidence            2    47888999999999999999998   99999999999999975 46789999999976554322    1112256


Q ss_pred             cccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          148 GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       148 ~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      .|.|||++.+.+|+...|+||.||+||||.||+..|.+..+..
T Consensus       600 FYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~  642 (752)
T KOG0670|consen  600 FYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQ  642 (752)
T ss_pred             hccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHH
Confidence            7999999999999999999999999999999999998877653

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.85  E-value=2.1e-22  Score=168.08  Aligned_cols=181  Identities=22%  Similarity=0.210  Sum_probs=150.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      |||||+..+++.+|.|+-+-..   .+...-.+.|+.+....+|+|++.      ...-++..++|+.+|+|.++.. .+
T Consensus        31 vyKaRd~~s~elaavkvVkLep---~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicMEycgggslQdiy~~Tg  107 (829)
T KOG0576|consen   31 VYKARDKRSGELAAVKVVKLEP---GDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICMEYCGGGSLQDIYHVTG  107 (829)
T ss_pred             hhhhcccccCchhhheeeeccC---CccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEEecCCCcccceeeecc
Confidence            7999999999999999865432   234455777888888899999874      2344678999999999988775 46


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      ++++.++..+++..+.|+.|||+   .+=+|||+|-.||+++..|.+|++|||.+..+....  .......||+.|||||
T Consensus       108 plselqiayvcRetl~gl~ylhs---~gk~hRdiKGanilltd~gDvklaDfgvsaqitati--~KrksfiGtpywmapE  182 (829)
T KOG0576|consen  108 PLSELQIAYVCRETLQGLKYLHS---QGKIHRDIKGANILLTDEGDVKLADFGVSAQITATI--AKRKSFIGTPYWMAPE  182 (829)
T ss_pred             cchhHHHHHHHhhhhccchhhhc---CCcccccccccceeecccCceeecccCchhhhhhhh--hhhhcccCCccccchh
Confidence            79999999999999999999999   899999999999999999999999999987554322  2234578999999999


Q ss_pred             ccC---CCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          154 LWM---PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       154 ~~~---~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      +..   .+.|...+|+|+.|++..|+..-++|..+-.++
T Consensus       183 vaaverkggynqlcdiwa~gitAiel~eLqpplfdlhpm  221 (829)
T KOG0576|consen  183 VAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHPM  221 (829)
T ss_pred             HHHHHhcccccccccccccccchhhhhhcCCcccccchH
Confidence            864   457899999999999999999989987766554

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.85  E-value=1.6e-21  Score=154.58  Aligned_cols=162  Identities=16%  Similarity=0.163  Sum_probs=134.3

Q ss_pred             cCCcccCCcHHHHHHhccccccc-------cccccceEEEEEccCCchhhhhc---------cCCCCHHHHHHHHHHHHH
Q 044746           26 MDKPIRFTSPQRMIAADNFSNLV-------GSEDTETYIKGFLAMGPFYLLCK---------KNILGFGQLREIEVSTSK   89 (202)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~i~~   89 (202)
                      +-+...+..|..+.....|+|++       ..+.+..+....+.-|+|..++.         ...++-.+...++.|++.
T Consensus       328 ~iQv~~~L~es~lly~~sH~nll~V~~V~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~  407 (563)
T KOG1024|consen  328 QIQVNLLLQESMLLYGASHPNLLSVLGVSIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAM  407 (563)
T ss_pred             HHHHHHHHHHHHHHhcCcCCCccceeEEEeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHH
Confidence            33455677777778888899875       35666778888888888877664         224777889999999999


Q ss_pred             HHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHH
Q 044746           90 GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSF  169 (202)
Q Consensus        90 ~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~  169 (202)
                      |++|||.   .++||.||..+|++|+..-.+||+|-.+++-+-.............+..||+||.+....|+..+|+|||
T Consensus       408 am~hlh~---~~ViHkDiAaRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsf  484 (563)
T KOG1024|consen  408 AMEHLHN---HGVIHKDIAARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSF  484 (563)
T ss_pred             HHHHHHh---cCcccchhhhhcceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHH
Confidence            9999999   9999999999999999999999999999996554444444555566889999999999999999999999


Q ss_pred             HHHHHHHHc-CCCCCcchhccc
Q 044746          170 GMLLFEVVG-RRRNLEKEISEG  190 (202)
Q Consensus       170 G~~l~el~~-g~~p~~~~~~~~  190 (202)
                      |+++|||+| |+.|+-..++.+
T Consensus       485 GVllWELmtlg~~PyaeIDPfE  506 (563)
T KOG1024|consen  485 GVLLWELMTLGKLPYAEIDPFE  506 (563)
T ss_pred             HHHHHHHHhcCCCCccccCHHH
Confidence            999999998 999998887765

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.85  E-value=3.8e-21  Score=155.80  Aligned_cols=111  Identities=23%  Similarity=0.260  Sum_probs=73.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccc---cccc----------ccccceEEEEEccCCch
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFS---NLVG----------SEDTETYIKGFLAMGPF   66 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~i~----------~~~~~~~~~~~~~~~~l   66 (202)
                      ||.|.+..++++||.||.+.-..-......++..-..+.... +++   .+++          .|...+.+.+++.. +|
T Consensus        94 VWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~HVCMVfEvLGd-nL  172 (590)
T KOG1290|consen   94 VWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQHVCMVFEVLGD-NL  172 (590)
T ss_pred             eEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCCcEEEEEehhhhh-HH
Confidence            789999999999999998766544333222222222222111 222   1221          23333445555544 44


Q ss_pred             hhhh---ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEE
Q 044746           67 YLLC---KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL  114 (202)
Q Consensus        67 ~~~~---~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~  114 (202)
                      +.++   .-+.++...++.|++|++.||.|||..  .+|||-||||+|||+
T Consensus       173 LklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~e--cgIIHTDlKPENvLl  221 (590)
T KOG1290|consen  173 LKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRE--CGIIHTDLKPENVLL  221 (590)
T ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHh--cCccccCCCcceeee
Confidence            4444   334599999999999999999999995  799999999999999

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.84  E-value=1.1e-21  Score=167.12  Aligned_cols=151  Identities=25%  Similarity=0.339  Sum_probs=113.3

Q ss_pred             HHHHHhcccccccccc----ccceEEEE-EccCCchhhhhccC--CC---CHHHHHHHHHHHHHHHHHHHhCCCCCeEEe
Q 044746           36 QRMIAADNFSNLVGSE----DTETYIKG-FLAMGPFYLLCKKN--IL---GFGQLREIEVSTSKGIAYLHEECRQKIVHY  105 (202)
Q Consensus        36 ~~~~~~~~~~~~i~~~----~~~~~~~~-~~~~~~l~~~~~~~--~~---~~~~~~~~~~~i~~~l~~lH~~~~~~iiHr  105 (202)
                      ..+....+|+|+|...    +..+.|.. .+...+|.+++...  .+   .--....+..|+++||.+||+   .+|+||
T Consensus       554 ~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHs---l~iVHR  630 (903)
T KOG1027|consen  554 QLLQESDEHPNVIRYYCSEQDRQFLYIALELCACSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHS---LKIVHR  630 (903)
T ss_pred             HHHHhccCCCceEEEEeeccCCceEEEEehHhhhhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHh---cccccc
Confidence            4456678999998522    22222222 23345777777552  11   113457788999999999999   899999


Q ss_pred             cCCCCcEEEcC---C--CceEEeeeecceeccccCccc-ccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcC
Q 044746          106 DIKPESVLLDE---N--FFPKAADFGLAKLYNREHTHI-TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGR  179 (202)
Q Consensus       106 dlk~~nil~~~---~--~~~kl~dfgl~~~~~~~~~~~-~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g  179 (202)
                      ||||+||||+.   +  ..++|+|||+++.+..+.+.. ...+..||-+|+|||++....-+.++||+|+||++|+.++|
T Consensus       631 DLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltg  710 (903)
T KOG1027|consen  631 DLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTG  710 (903)
T ss_pred             cCCCceEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecC
Confidence            99999999975   2  578999999999876554322 24556789999999999988878899999999999998885


Q ss_pred             -CCCCcchhcc
Q 044746          180 -RRNLEKEISE  189 (202)
Q Consensus       180 -~~p~~~~~~~  189 (202)
                       +.||.+.-..
T Consensus       711 G~HpFGd~~~R  721 (903)
T KOG1027|consen  711 GSHPFGDSLER  721 (903)
T ss_pred             CccCCCchHHh
Confidence             9999876654

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.84  E-value=2.6e-20  Score=156.91  Aligned_cols=129  Identities=19%  Similarity=0.181  Sum_probs=100.0

Q ss_pred             ccceEEEEEccCCchhhhhcc-------------------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEec
Q 044746           52 DTETYIKGFLAMGPFYLLCKK-------------------------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYD  106 (202)
Q Consensus        52 ~~~~~~~~~~~~~~l~~~~~~-------------------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrd  106 (202)
                      +..+++++|+++++|..++..                         ..+++..++.++.|++.||.|||+   .+++|||
T Consensus       258 ~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH~---~~ivHrD  334 (507)
T PLN03224        258 GSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHR---IGIVHRD  334 (507)
T ss_pred             CceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHHHHHHHH---CCeecCC
Confidence            345789999999988776642                         124567889999999999999999   9999999


Q ss_pred             CCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCC--------------------C--Cchh
Q 044746          107 IKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYS--------------------V--TQKC  164 (202)
Q Consensus       107 lk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~--------------------~--~~~~  164 (202)
                      |||+||+++.++.++|+|||++.......... .....+++.|+|||.+....                    +  ..+.
T Consensus       335 LKp~NILl~~~~~~kL~DFGla~~~~~~~~~~-~~~g~~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~  413 (507)
T PLN03224        335 IKPENLLVTVDGQVKIIDFGAAVDMCTGINFN-PLYGMLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLF  413 (507)
T ss_pred             CchHhEEECCCCcEEEEeCcCccccccCCccC-ccccCCCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCcc
Confidence            99999999999999999999997543322111 11223478999999875321                    1  1346


Q ss_pred             hHHHHHHHHHHHHcCCC-CCc
Q 044746          165 DVFSFGMLLFEVVGRRR-NLE  184 (202)
Q Consensus       165 Diws~G~~l~el~~g~~-p~~  184 (202)
                      |+||+||++++|++|.. ||.
T Consensus       414 DvwSlGvil~em~~~~l~p~~  434 (507)
T PLN03224        414 DSYTAGVLLMQMCVPELRPVA  434 (507)
T ss_pred             chhhHHHHHHHHHhCCCCCcc
Confidence            99999999999999875 664

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.80  E-value=3.6e-19  Score=132.72  Aligned_cols=169  Identities=28%  Similarity=0.418  Sum_probs=123.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc---c---ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV---G---SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~---~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++....+++.++.|+........  ....+..|........+++++   +   ......+++++..+++|..++... 
T Consensus         9 v~~~~~~~~~~~~~~K~~~~~~~~~--~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~   86 (215)
T cd00180           9 VYLARDKKTGKKVAIKIIKKEDSSS--LLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKENE   86 (215)
T ss_pred             EEEEEecCCCcEEEEEEeccccchh--HHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHHHHHhcc
Confidence            4667776645555555433222110  112344554444444555443   2   224567888899989999988765 


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC-CCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE-NFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       .+++..+..++.+++.++.+||+   .+++|+||+|.||+++. ++.++++|||.+........  ......+...|++
T Consensus        87 ~~~~~~~~~~~~~~l~~~l~~lh~---~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~~~~  161 (215)
T cd00180          87 GKLSEDEILRILLQILEGLEYLHS---NGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS--LLKTIVGTPAYMA  161 (215)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcc--hhhcccCCCCccC
Confidence             79999999999999999999999   89999999999999998 89999999999986543321  1122345788999


Q ss_pred             CcccCCC-CCCchhhHHHHHHHHHHH
Q 044746          152 PELWMPY-SVTQKCDVFSFGMLLFEV  176 (202)
Q Consensus       152 Pe~~~~~-~~~~~~Diws~G~~l~el  176 (202)
                      ||..... ..+.+.|+|++|++++++
T Consensus       162 pe~~~~~~~~~~~~D~~~lg~~~~~l  187 (215)
T cd00180         162 PEVLLGKGYYSEKSDIWSLGVILYEL  187 (215)
T ss_pred             hhHhcccCCCCchhhhHHHHHHHHHH
Confidence            9998876 778899999999999988

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.80  E-value=5.8e-20  Score=146.46  Aligned_cols=179  Identities=25%  Similarity=0.359  Sum_probs=128.1

Q ss_pred             CCccccCC---CcceeehhhhchhhhhccCCcccCCcHHHHHHhc-cccccc------cccccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRG---STRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLV------GSEDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i------~~~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||+|.+..   ...+||.|--.     ....+.+...|..++... ...|++      ..++....++++++.....++.
T Consensus        52 v~~a~~~~~~~~~~~valk~i~-----~ts~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~ivlp~~~H~~f~~l~  126 (418)
T KOG1167|consen   52 VYKATDIEQDTKRRYVALKAIY-----RTSSPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQVAIVLPYFEHDRFRDLY  126 (418)
T ss_pred             hhhhhHhhhccccceEeeeecc-----cccCchHHHHHHHHHHHhccchhhhcchhhhccCCeeEEEecccCccCHHHHH
Confidence            45555544   55555544311     123344555555544443 333444      3566667889999998887777


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC-CCceEEeeeecceeccc--------c-------
Q 044746           71 KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE-NFFPKAADFGLAKLYNR--------E-------  134 (202)
Q Consensus        71 ~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~-~~~~kl~dfgl~~~~~~--------~-------  134 (202)
                      .  .++..+++.+...++.||.++|.   +||||||+||.|+|.+. .+.-.|.|||++.....        .       
T Consensus       127 ~--~l~~~~i~~Yl~~ll~Al~~~h~---~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~~~~s~~~~~~~~~  201 (418)
T KOG1167|consen  127 R--SLSLAEIRWYLRNLLKALAHLHK---NGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQTEHSRSYSGRHAT  201 (418)
T ss_pred             h--cCCHHHHHHHHHHHHHHhhhhhc---cCccccCCCccccccccccCCceEEechhHHHHHhhhhhhhhhhhhcccCC
Confidence            4  46688999999999999999999   99999999999999975 45678999999982100        0       


Q ss_pred             ---------------------------CcccccCCCCCCCcccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          135 ---------------------------HTHITSTGRRRTPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       135 ---------------------------~~~~~~~~~~gt~~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                                                 ........+.||++|.|||++... ..++++||||.|++++-+++++.||...
T Consensus       202 ~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf~a  281 (418)
T KOG1167|consen  202 PAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFFKA  281 (418)
T ss_pred             ccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceeeccceeehhhccccccccC
Confidence                                       000001135789999999998754 4678999999999999999999999876


Q ss_pred             hcc
Q 044746          187 ISE  189 (202)
Q Consensus       187 ~~~  189 (202)
                      .++
T Consensus       282 ~dd  284 (418)
T KOG1167|consen  282 KDD  284 (418)
T ss_pred             ccc
Confidence            654

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=7.3e-20  Score=157.11  Aligned_cols=131  Identities=22%  Similarity=0.276  Sum_probs=116.3

Q ss_pred             EEEccCCchhhhhccC-CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc
Q 044746           58 KGFLAMGPFYLLCKKN-ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT  136 (202)
Q Consensus        58 ~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~  136 (202)
                      ++++++ +|+.++... .++..++-.+.+|++.|+.|+|+   .|+.|||+|++|+++..+|.+|++|||.+.....+..
T Consensus       400 mE~~~~-Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h~---~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e  475 (601)
T KOG0590|consen  400 MEYCPY-DLFSLVMSNGKLTPLEADCFFKQLLRGVKYLHS---MGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPWE  475 (601)
T ss_pred             hhcccH-HHHHHHhcccccchhhhhHHHHHHHHHHHHHHh---cCceeccCccccEEEecCCceEEeecCcceeeccCcc
Confidence            888888 888888776 89999999999999999999999   9999999999999999999999999999986654433


Q ss_pred             c--cccCCCCCCCcccCCcccCCCCCCch-hhHHHHHHHHHHHHcCCCCCcchhccccc
Q 044746          137 H--ITSTGRRRTPGCEAPELWMPYSVTQK-CDVFSFGMLLFEVVGRRRNLEKEISEGQE  192 (202)
Q Consensus       137 ~--~~~~~~~gt~~y~aPe~~~~~~~~~~-~Diws~G~~l~el~~g~~p~~~~~~~~~~  192 (202)
                      .  ....+..|+..|+|||.+.+..|++. .||||.|+++..|.+|+.||.....++++
T Consensus       476 ~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~  534 (601)
T KOG0590|consen  476 KNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNS  534 (601)
T ss_pred             hhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccc
Confidence            3  55677889999999999999888865 89999999999999999999887766553

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.78  E-value=2e-18  Score=138.99  Aligned_cols=182  Identities=16%  Similarity=0.153  Sum_probs=130.0

Q ss_pred             CCccccCCCc-ceeehhhhchhhhhccCCcccCCcHHHHHHh-------ccccccccccc-c--ceEEEEEccCCchhhh
Q 044746            1 MEKPRNRGST-RFITRTIDKSLDAMEMDKPIRFTSPQRMIAA-------DNFSNLVGSED-T--ETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~-~--~~~~~~~~~~~~l~~~   69 (202)
                      ||++.+.... ..+|.|++........   ..+..|......       .++++++..|. .  ..++.+.+.+.+|.++
T Consensus        34 V~~v~~~~~~~~~~a~K~e~~~~~~~~---~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~iVM~l~G~sL~dl  110 (322)
T KOG1164|consen   34 VYLVSDKSEKNKEYAKKLEKKELGSKP---SVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFIVMSLLGPSLEDL  110 (322)
T ss_pred             EEEEEecCCCCeeEEEEEEEecccCCC---ccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEEEEeccCccHHHH
Confidence            4666665553 5667776554422221   134444443332       25556665552 2  2344455667777776


Q ss_pred             hc---cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC-----CceEEeeeecce--eccccCc---
Q 044746           70 CK---KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN-----FFPKAADFGLAK--LYNREHT---  136 (202)
Q Consensus        70 ~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~-----~~~kl~dfgl~~--~~~~~~~---  136 (202)
                      ..   .+.++...+..++.|++.+|+++|+   .|++||||||.|+++...     ..+.+.|||+++  .......   
T Consensus       111 ~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~---~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~  187 (322)
T KOG1164|consen  111 RKRNPPGRFSRKTVLRIAIQNLNALEDLHS---KGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNL  187 (322)
T ss_pred             HHhCCCCCcCHhHHHHHHHHHHHHHHHHHh---cCcccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCccc
Confidence            63   3569999999999999999999999   999999999999999854     468999999998  3222111   


Q ss_pred             -cc-c-cCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          137 -HI-T-STGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       137 -~~-~-~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                       .. . .....||..|.++.+..+...+.+.|+||++.++.|+..|..||.....
T Consensus       188 ~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~  242 (322)
T KOG1164|consen  188 RPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEM  242 (322)
T ss_pred             ccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccc
Confidence             11 1 1234589999999999999999999999999999999999999966553

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.75  E-value=1.6e-18  Score=140.58  Aligned_cols=149  Identities=17%  Similarity=0.134  Sum_probs=104.5

Q ss_pred             CCccccCC-Ccceeehhhhchhhh--hccCCcccCCcHHHHHHhccccccc---cccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRG-STRFITRTIDKSLDA--MEMDKPIRFTSPQRMIAADNFSNLV---GSEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~-~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||+|++.. +++.+|.|.......  ........|..|...+...+|++++   ...+..+++++++++++|......  
T Consensus        34 Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~~~~~LVmE~~~G~~L~~~~~~--  111 (365)
T PRK09188         34 VERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLATGKDGLVRGWTEGVPLHLARPH--  111 (365)
T ss_pred             EEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEcCCcEEEEEccCCCCHHHhCcc--
Confidence            68887765 556556654321100  0111234577888888888888765   233456789999999998643211  


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecC-CCCcEEEcCCCceEEeeeecceeccccCccc------ccCCCCCCC
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDI-KPESVLLDENFFPKAADFGLAKLYNREHTHI------TSTGRRRTP  147 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdl-k~~nil~~~~~~~kl~dfgl~~~~~~~~~~~------~~~~~~gt~  147 (202)
                       .   ...++.+++.||.|||+   ++|+|||| ||+|||++.++.++|+|||+++.........      ..+...+++
T Consensus       112 -~---~~~~~~~i~~aL~~lH~---~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~  184 (365)
T PRK09188        112 -G---DPAWFRSAHRALRDLHR---AGITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHK  184 (365)
T ss_pred             -c---hHHHHHHHHHHHHHHHH---CCCeeCCCCCcceEEEcCCCCEEEEECccceecccCcchhhhhhhhhhhhhhccC
Confidence             1   24678999999999999   99999999 9999999989999999999999764432111      113456788


Q ss_pred             cccCCcccCCC
Q 044746          148 GCEAPELWMPY  158 (202)
Q Consensus       148 ~y~aPe~~~~~  158 (202)
                      .|+|||++...
T Consensus       185 ~~~~pe~~~~~  195 (365)
T PRK09188        185 RTYAPDALTPR  195 (365)
T ss_pred             ccCCcccCChh
Confidence            89999998653

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.75  E-value=7.8e-18  Score=132.87  Aligned_cols=156  Identities=30%  Similarity=0.400  Sum_probs=122.9

Q ss_pred             cccCCcHHHHHHhcccc-ccccc------cccceEEEEEccCCchhhhhccC----CCCHHHHHHHHHHHHHHHHHHHhC
Q 044746           29 PIRFTSPQRMIAADNFS-NLVGS------EDTETYIKGFLAMGPFYLLCKKN----ILGFGQLREIEVSTSKGIAYLHEE   97 (202)
Q Consensus        29 ~~~~~~~~~~~~~~~~~-~~i~~------~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~i~~~l~~lH~~   97 (202)
                      ...+..+........++ +++..      .....+++++..++.+..+....    .++......+..|++.++.|+|+ 
T Consensus        41 ~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~-  119 (384)
T COG0515          41 VERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHS-  119 (384)
T ss_pred             HHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHh-
Confidence            34455555556665555 34421      12236888888999888776655    69999999999999999999999 


Q ss_pred             CCCCeEEecCCCCcEEEcCCC-ceEEeeeecceeccccCccc----ccCCCCCCCcccCCcccCC---CCCCchhhHHHH
Q 044746           98 CRQKIVHYDIKPESVLLDENF-FPKAADFGLAKLYNREHTHI----TSTGRRRTPGCEAPELWMP---YSVTQKCDVFSF  169 (202)
Q Consensus        98 ~~~~iiHrdlk~~nil~~~~~-~~kl~dfgl~~~~~~~~~~~----~~~~~~gt~~y~aPe~~~~---~~~~~~~Diws~  169 (202)
                        .+++|||+||+||+++..+ .++++|||.+..........    ......|+..|++||.+.+   ...+...|+||+
T Consensus       120 --~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~  197 (384)
T COG0515         120 --KGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSL  197 (384)
T ss_pred             --CCeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHH
Confidence              8999999999999999888 79999999998554433221    2355678999999999987   578889999999


Q ss_pred             HHHHHHHHcCCCCCcchh
Q 044746          170 GMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       170 G~~l~el~~g~~p~~~~~  187 (202)
                      |++++++++|..||....
T Consensus       198 g~~~~~~~~~~~p~~~~~  215 (384)
T COG0515         198 GITLYELLTGLPPFEGEK  215 (384)
T ss_pred             HHHHHHHHhCCCCCCCCC
Confidence            999999999999976654

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.71  E-value=3.2e-17  Score=128.00  Aligned_cols=179  Identities=13%  Similarity=0.190  Sum_probs=129.9

Q ss_pred             ccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc--c-ccccceEEEEEccCC--chhhhhccCCCCHHH
Q 044746            5 RNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV--G-SEDTETYIKGFLAMG--PFYLLCKKNILGFGQ   79 (202)
Q Consensus         5 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~-~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~   79 (202)
                      .+.-.++.||.|++....+..+- ..++..-.++......|++.  | +|-+..++++.+.-.  .|+++| .+.++...
T Consensus        48 ~Nl~nne~VAIKfEPrkS~APQL-rdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidLLGPSLEDLFD~C-gR~FSvKT  125 (449)
T KOG1165|consen   48 KNLYNNEPVAIKFEPRKSEAPQL-RDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDLLGPSLEDLFDLC-GRRFSVKT  125 (449)
T ss_pred             cccccCceEEEEeccccCCcchH-HHHHHHHHHHcCCCCCCceeeeccccchhhhhhhhhCcCHHHHHHHh-cCcccHHh
Confidence            34456778888886554333221 12233334444555666544  2 222223444443221  466677 46799999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC-----CceEEeeeecceeccccC-----cccccCCCCCCCcc
Q 044746           80 LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN-----FFPKAADFGLAKLYNREH-----THITSTGRRRTPGC  149 (202)
Q Consensus        80 ~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~-----~~~kl~dfgl~~~~~~~~-----~~~~~~~~~gt~~y  149 (202)
                      +..++.|++.-++|+|+   +.+|.|||||+|+||...     ..+.++|||+|+...++.     ...+.....||..|
T Consensus       126 V~miA~Qmi~rie~vH~---k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARY  202 (449)
T KOG1165|consen  126 VAMIAKQMITRIEYVHE---KDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARY  202 (449)
T ss_pred             HHHHHHHHHHHHHHHHh---cceeecccCccceeecCCCCCCCceEEEEeccchhhhcCccccccCccccccccccceee
Confidence            99999999999999999   999999999999999754     357899999999775543     23345567789999


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |+-....+...+.+.|+-|+|-++.+.+.|..||.+-.-
T Consensus       203 MSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA  241 (449)
T KOG1165|consen  203 MSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKA  241 (449)
T ss_pred             eEeeccccchhhhhhhHHHhhhhhhhhccCCCccccccC
Confidence            999999999999999999999999999999999987543

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.70  E-value=1.3e-17  Score=125.10  Aligned_cols=181  Identities=15%  Similarity=0.168  Sum_probs=132.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHH----HHHhccccccc--c-ccccceEEEEEccCC--chhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQR----MIAADNFSNLV--G-SEDTETYIKGFLAMG--PFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i--~-~~~~~~~~~~~~~~~--~l~~~~~   71 (202)
                      +|.+....++..||.|+++.......     +..|..    +.....+|.+.  + +..+..++++.+.-.  +|+.+|.
T Consensus        31 Iy~~~~i~~ge~VAiK~Es~~a~hpq-----L~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMdLLGPsLEdLfnfC~  105 (341)
T KOG1163|consen   31 IYLGISITSGEEVAIKLESSKAKHPQ-----LLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMDLLGPSLEDLFNFCS  105 (341)
T ss_pred             eeeeeeccCCceEEEEeecccCCCcc-----hhHHHHHHHHhccCCCCchhhhhccccccceeeeeccCccHHHHHHHHh
Confidence            46778889999999999876544432     222322    22233444433  2 344455566554322  3555664


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC---CCceEEeeeecceecccc-----CcccccCCC
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNRE-----HTHITSTGR  143 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~---~~~~kl~dfgl~~~~~~~-----~~~~~~~~~  143 (202)
                       +.++...++.++-|++.-++|+|.   ++.|||||||+|+|..-   ...+.++|||+|+..-+.     ....+....
T Consensus       106 -R~ftmkTvLMLaDQml~RiEyvH~---r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~HIpyre~r~l  181 (341)
T KOG1163|consen  106 -RRFTMKTVLMLADQMLSRIEYVHL---RNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQHIPYREDRNL  181 (341)
T ss_pred             -hhhhHHhHHHHHHHHHHHHHHHHh---hccccccCCccceeeccccccceEEEEeccchhhhccccccccCccccCCcc
Confidence             568899999999999999999998   99999999999999964   356789999999965432     223344567


Q ss_pred             CCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      .||..|.+-....+...+.+.|+-|+|.+|.....|..||.+.....
T Consensus       182 tGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka~t  228 (341)
T KOG1163|consen  182 TGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKAAT  228 (341)
T ss_pred             ceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccchhh
Confidence            78999988888877777889999999999999999999999876543

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.70  E-value=1.1e-17  Score=146.30  Aligned_cols=100  Identities=26%  Similarity=0.358  Sum_probs=86.5

Q ss_pred             HHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc-------------cccCCCCCCCcccCCcc
Q 044746           88 SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-------------ITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        88 ~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~-------------~~~~~~~gt~~y~aPe~  154 (202)
                      +.+++|+|+   .+|+|||+||+|.++..-|++|+.|||+++........             ......+|||.|+|||+
T Consensus       153 vla~Eylh~---ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeV  229 (1205)
T KOG0606|consen  153 VLAVEYLHS---YGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEV  229 (1205)
T ss_pred             hHHhHhhcc---CCeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhh
Confidence            788999999   99999999999999999999999999999853211111             11234689999999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      +....|...+|+|++|+++||.+.|..||+++.+++
T Consensus       230 ilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpee  265 (1205)
T KOG0606|consen  230 ILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEE  265 (1205)
T ss_pred             hhhhccCCCccHHHHHHHHHHHheeeeeccCCCHHH
Confidence            999999999999999999999999999999997765

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.69  E-value=8.8e-18  Score=140.13  Aligned_cols=170  Identities=22%  Similarity=0.193  Sum_probs=127.2

Q ss_pred             cccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-cccccc------cccccceEEEEEccCCchhhhhccC-CC
Q 044746            4 PRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLV------GSEDTETYIKGFLAMGPFYLLCKKN-IL   75 (202)
Q Consensus         4 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i------~~~~~~~~~~~~~~~~~l~~~~~~~-~~   75 (202)
                      +.....+...+.|+.++......... ....+..+.... +++-++      ...+-..++..+..+|.+....... .+
T Consensus        16 ~~g~da~~~yamkvl~k~t~~~~~~~-~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~rgg~lft~l~~~~~f   94 (612)
T KOG0603|consen   16 AGGADAGHLYAMKVLKKATLKVRDRT-HTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLRGGDLFTRLSKEVMF   94 (612)
T ss_pred             hccccccchhhhhccccccccccccc-ccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcccchhhhccccCCch
Confidence            33445566666666655554444444 333444444433 355433      3444455777777887776666544 47


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCccc
Q 044746           76 GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELW  155 (202)
Q Consensus        76 ~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~  155 (202)
                      .+.....+...++.+++++|+   .++++||+|++||+++.+|++++.|||+++..-...      ..+||.-|||||++
T Consensus        95 ~~~~~~~~~aelaLald~lh~---l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~------~~cgt~eymApEI~  165 (612)
T KOG0603|consen   95 DELDVAFYLAELALALDHLHK---LGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEK------IACGTYEYRAPEII  165 (612)
T ss_pred             HHHHHHHHHHHHHHHHhhcch---hHHHHhcccccceeecccCccccCCchhhhHhHhhh------hcccchhhhhhHhh
Confidence            788889999999999999999   999999999999999999999999999998643322      12789999999999


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          156 MPYSVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       156 ~~~~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      .  .....+|.||||++.+|++||..||..
T Consensus       166 ~--gh~~a~D~ws~gvl~felltg~~pf~~  193 (612)
T KOG0603|consen  166 N--GHLSAADWWSFGVLAFELLTGTLPFGG  193 (612)
T ss_pred             h--ccCCcccchhhhhhHHHHhhCCCCCch
Confidence            8  456789999999999999999999987

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.68  E-value=1.8e-16  Score=118.28  Aligned_cols=74  Identities=15%  Similarity=0.127  Sum_probs=64.1

Q ss_pred             ceEEEEEccCCchhhh-hccCCCCHHHHHHHHHHHHHHHHHH-HhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceec
Q 044746           54 ETYIKGFLAMGPFYLL-CKKNILGFGQLREIEVSTSKGIAYL-HEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY  131 (202)
Q Consensus        54 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~i~~~l~~l-H~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~  131 (202)
                      ..+++++++++++... .....++..++..++.|++.+|.++ |+   .+++||||||+||+++ ++.++|+|||+|...
T Consensus        92 ~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~l~H~---~giiHrDlkP~NIli~-~~~v~LiDFG~a~~~  167 (190)
T cd05147          92 HVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQD---CRLVHADLSEYNLLYH-DGKLYIIDVSQSVEH  167 (190)
T ss_pred             CEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEE-CCcEEEEEccccccC
Confidence            4799999998876543 4556799999999999999999999 67   8999999999999998 478999999998743

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=1.5e-16  Score=140.54  Aligned_cols=177  Identities=15%  Similarity=0.113  Sum_probs=131.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCC----cccCCcHHHHHHhccccccccccccceEEEEEccCCchhhhhccCC-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDK----PIRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNI-L   75 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~-~   75 (202)
                      ||+|.... ++.||.|+.+.....+.-.    ..|+. ........++....-..+-..++.+|.+.|+|.++++... +
T Consensus       714 vy~a~~~~-~~~~alK~e~P~~~WEfYI~~q~~~RLk-~~~~~~~~~~~~a~~~~~~S~lv~ey~~~Gtlld~~N~~~~m  791 (974)
T KOG1166|consen  714 VYVATHSN-GKLVALKVEKPPNPWEFYICLQVMERLK-PQMLPSIMHISSAHVFQNASVLVSEYSPYGTLLDLINTNKVM  791 (974)
T ss_pred             EEEeecCC-CcEEEEEeecCCCceeeeehHHHHHhhc-hhhhcchHHHHHHHccCCcceeeeeccccccHHHhhccCCCC
Confidence            68888888 9999999987665443211    11222 1111111122221223344568999999999999997554 8


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC-------CCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           76 GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE-------NFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        76 ~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~-------~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      ++..+..++.|++.-++.||.   .+|||+||||+|+++..       ...++|+|||.+--+.--..........+|-.
T Consensus       792 ~e~lv~~~~~qml~ive~lH~---~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp~~~~F~~~~~td~  868 (974)
T KOG1166|consen  792 DEYLVMFFSCQMLRIVEHLHA---MGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFPDGTKFKAVWHTDL  868 (974)
T ss_pred             CchhhhHHHHHHHHHHHHHHh---cceecccCCcceeEeecccCCCCcccceEEEecccceeeeEcCCCcEEeeeecccc
Confidence            999999999999999999999   99999999999999942       45689999998864432222223345566888


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCC
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRN  182 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p  182 (202)
                      +-++|+..+++++.++|.|-++.+++-|+.|+.-
T Consensus       869 f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~  902 (974)
T KOG1166|consen  869 FDCIEMREGRPWTYQIDYFGLAATVHVMLFGKYM  902 (974)
T ss_pred             chhHHHhcCCCCchhhhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998743

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.66  E-value=1.6e-16  Score=121.37  Aligned_cols=157  Identities=18%  Similarity=0.305  Sum_probs=121.6

Q ss_pred             ccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC---CCHHHHHHHHHHHHHHHHHHH
Q 044746           25 EMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI---LGFGQLREIEVSTSKGIAYLH   95 (202)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~i~~~l~~lH   95 (202)
                      .....+.|..|.-.+....|||++.      +-.....+..|++.|+|+..++...   +.-.++.+++.+++.|+.|||
T Consensus       227 t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflh  306 (448)
T KOG0195|consen  227 TARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLH  306 (448)
T ss_pred             chhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHh
Confidence            3445667888888888889998763      4455668899999999999997664   788899999999999999999


Q ss_pred             hCCCCCeEEecCCCCcEEEcCCCceEEe--eeecceeccccCcccccCCCCCCCcccCCcccCCCCCC---chhhHHHHH
Q 044746           96 EECRQKIVHYDIKPESVLLDENFFPKAA--DFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVT---QKCDVFSFG  170 (202)
Q Consensus        96 ~~~~~~iiHrdlk~~nil~~~~~~~kl~--dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~---~~~Diws~G  170 (202)
                      +.. .-|.-..|....++++.+..++++  |--.+..         ..+..-.|.||+||.++..+-+   ..+|+|||+
T Consensus       307 sle-p~ipr~~lns~hvmidedltarismad~kfsfq---------e~gr~y~pawmspealqrkped~n~raadmwsfa  376 (448)
T KOG0195|consen  307 SLE-PMIPRFYLNSKHVMIDEDLTARISMADTKFSFQ---------EVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFA  376 (448)
T ss_pred             hcc-hhhhhhhcccceEEecchhhhheecccceeeee---------ccccccCcccCCHHHHhcCchhcchhhhhHHHHH
Confidence            852 344455788999999988777765  3222110         1222337899999999876544   568999999


Q ss_pred             HHHHHHHcCCCCCcchhcccc
Q 044746          171 MLLFEVVGRRRNLEKEISEGQ  191 (202)
Q Consensus       171 ~~l~el~~g~~p~~~~~~~~~  191 (202)
                      +++||+.|++.||.+-+++++
T Consensus       377 illwel~trevpfadlspmec  397 (448)
T KOG0195|consen  377 ILLWELNTREVPFADLSPMEC  397 (448)
T ss_pred             HHHHHhhccccccccCCchhh
Confidence            999999999999999888765

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.62  E-value=6.6e-16  Score=115.61  Aligned_cols=148  Identities=17%  Similarity=0.113  Sum_probs=101.8

Q ss_pred             cCCcHHHHHHhcc----ccccccccccceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEec
Q 044746           31 RFTSPQRMIAADN----FSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYD  106 (202)
Q Consensus        31 ~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrd  106 (202)
                      .+..|...+...+    +|++++.. ..++.++++.+.+|......      ....++.|++.+|.++|+   .||+|||
T Consensus        47 l~~rE~~iL~~L~~~~~vP~ll~~~-~~~lvmeyI~G~~L~~~~~~------~~~~~~~qi~~~L~~lH~---~GIvHrD  116 (218)
T PRK12274         47 LARREALALRQLDGLPRTPRLLHWD-GRHLDRSYLAGAAMYQRPPR------GDLAYFRAARRLLQQLHR---CGVAHND  116 (218)
T ss_pred             HHHHHHHHHHhcCCCCCCCEEEEEc-CEEEEEeeecCccHHhhhhh------hhHHHHHHHHHHHHHHHH---CcCccCC
Confidence            4566666666653    44565543 35788899998888654321      124578899999999999   9999999


Q ss_pred             C-CCCcEEEcCCCceEEeeeecceeccccCc-----cc-c-----cCCCCCCCcccCCcccCCC-CCC-chhhHHHHHHH
Q 044746          107 I-KPESVLLDENFFPKAADFGLAKLYNREHT-----HI-T-----STGRRRTPGCEAPELWMPY-SVT-QKCDVFSFGML  172 (202)
Q Consensus       107 l-k~~nil~~~~~~~kl~dfgl~~~~~~~~~-----~~-~-----~~~~~gt~~y~aPe~~~~~-~~~-~~~Diws~G~~  172 (202)
                      | ||.||+++.++.++|+|||++........     .. .     ......++.+++|+-..-. ..+ ...+.++-|+-
T Consensus       117 L~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~  196 (218)
T PRK12274        117 LAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKP  196 (218)
T ss_pred             CCCcceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcch
Confidence            9 79999999999999999999985443221     00 0     0011235566666543321 233 44566789999


Q ss_pred             HHHHHcCCCCCcchhc
Q 044746          173 LFEVVGRRRNLEKEIS  188 (202)
Q Consensus       173 l~el~~g~~p~~~~~~  188 (202)
                      +|.++||..|..++.+
T Consensus       197 ~~~~~~~~~~~~~~~~  212 (218)
T PRK12274        197 VYRFVTRRVLHWEDNE  212 (218)
T ss_pred             HHHHHhccCCccccCC
Confidence            9999999998776554

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=1.1e-16  Score=131.41  Aligned_cols=124  Identities=17%  Similarity=0.270  Sum_probs=103.4

Q ss_pred             cccccceEEEEEccCCchhhhhccC----CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEee
Q 044746           49 GSEDTETYIKGFLAMGPFYLLCKKN----ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAAD  124 (202)
Q Consensus        49 ~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~d  124 (202)
                      +...+.++.|.++...+|.+++.++    .-++...+.++.|++.|++|      ++.+|||+||.||....+..+||.|
T Consensus       326 ~~~~~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y------k~~ihrdlkp~nif~~~d~q~kIgD  399 (516)
T KOG1033|consen  326 GKKVYLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY------KGLIHRDLKPSNIFFSDDDQLKIGD  399 (516)
T ss_pred             ccccchhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh------ccchhhhccccccccccchhhhhhh
Confidence            3344556667778888898888644    36778899999999999998      4789999999999999999999999


Q ss_pred             eecceeccccC----cccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc
Q 044746          125 FGLAKLYNREH----THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG  178 (202)
Q Consensus       125 fgl~~~~~~~~----~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~  178 (202)
                      ||+........    .....+...||..||+||.+.+..|+.++||||+|++++|+++
T Consensus       400 Fgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~  457 (516)
T KOG1033|consen  400 FGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLI  457 (516)
T ss_pred             hhheeecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHH
Confidence            99988665443    2223455778999999999999999999999999999999987

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.58  E-value=1.3e-14  Score=116.12  Aligned_cols=122  Identities=20%  Similarity=0.257  Sum_probs=94.0

Q ss_pred             CchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc--CCC--ceEEeeeecceecccc----C
Q 044746           64 GPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD--ENF--FPKAADFGLAKLYNRE----H  135 (202)
Q Consensus        64 ~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~--~~~--~~kl~dfgl~~~~~~~----~  135 (202)
                      .+|.+++-.+..+.....-+..|+++|+.|||.   ++|.|||+|.+|||+.  .++  .+.++|||++-.-...    .
T Consensus       327 ~tLr~yl~~~~~s~r~~~~~laQlLEav~hL~~---hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlp  403 (598)
T KOG4158|consen  327 QTLREYLWTRHRSYRTGRVILAQLLEAVTHLHK---HGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLP  403 (598)
T ss_pred             hhHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH---ccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccc
Confidence            367777777778888899999999999999999   9999999999999994  333  4678999988642210    1


Q ss_pred             cccccCCCCCCCcccCCcccCCCC-----C-CchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          136 THITSTGRRRTPGCEAPELWMPYS-----V-TQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       136 ~~~~~~~~~gt~~y~aPe~~~~~~-----~-~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .........|+-..||||+....+     . -.++|.|+.|.+.||+++...||.+...
T Consensus       404 y~S~~Vd~GGNa~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGe  462 (598)
T KOG4158|consen  404 YESDEVDLGGNAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGE  462 (598)
T ss_pred             cccccccCCCcceecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccch
Confidence            111223345678899999986432     1 1589999999999999999999988443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.57  E-value=5.7e-16  Score=136.20  Aligned_cols=119  Identities=23%  Similarity=0.247  Sum_probs=91.3

Q ss_pred             CchhhhhccCC-CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeeccee--ccccCc----
Q 044746           64 GPFYLLCKKNI-LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL--YNREHT----  136 (202)
Q Consensus        64 ~~l~~~~~~~~-~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~--~~~~~~----  136 (202)
                      .+|++.+..++ +..-+.+.|+.|++.||.-+|.   .+|+|+|||.+|||+++=..+.|+||...+.  +..+..    
T Consensus       105 hnLyDRlSTRPFL~~iEKkWiaFQLL~al~qcH~---~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPadf~  181 (1431)
T KOG1240|consen  105 HNLYDRLSTRPFLVLIEKKWIAFQLLKALSQCHK---LGVCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPADFT  181 (1431)
T ss_pred             hhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHH---cCccccccccceEEEeeechhhhhcccccCCccCCCCCcccce
Confidence            46777777666 6777899999999999999999   9999999999999999989999999987763  111110    


Q ss_pred             ccccCCCCCCCcccCCcccCC----------CC-CCchhhHHHHHHHHHHHHc-CCCCCcch
Q 044746          137 HITSTGRRRTPGCEAPELWMP----------YS-VTQKCDVFSFGMLLFEVVG-RRRNLEKE  186 (202)
Q Consensus       137 ~~~~~~~~gt~~y~aPe~~~~----------~~-~~~~~Diws~G~~l~el~~-g~~p~~~~  186 (202)
                      ..-.+. ..-.+|+|||-+..          .+ .+++.||+|+||+++|+++ |+|||...
T Consensus       182 fFFDTS-rRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LS  242 (1431)
T KOG1240|consen  182 FFFDTS-RRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLS  242 (1431)
T ss_pred             EEEecC-CceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHH
Confidence            000111 11347999998753          12 6688999999999999986 89998643

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.57  E-value=5.3e-15  Score=110.46  Aligned_cols=76  Identities=17%  Similarity=0.105  Sum_probs=64.9

Q ss_pred             ceEEEEEccCCchh-hhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceecc
Q 044746           54 ETYIKGFLAMGPFY-LLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN  132 (202)
Q Consensus        54 ~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~  132 (202)
                      ..+++++++++++. ..+....++..+...++.|++.++.++|+.  .+++||||||+||+++ ++.++|+|||++....
T Consensus        92 ~~lVmE~~~g~~~~~~~l~~~~~~~~~~~~i~~~l~~~l~~lH~~--~givHrDlkP~NIll~-~~~~~liDFG~a~~~~  168 (190)
T cd05145          92 NVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLYQE--AGLVHGDLSEYNILYH-DGKPYIIDVSQAVELD  168 (190)
T ss_pred             CEEEEEEecCCCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHh--CCEecCCCChhhEEEE-CCCEEEEEcccceecC
Confidence            46899999887543 334556788899999999999999999973  7999999999999998 8899999999997654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.52  E-value=1.3e-14  Score=113.70  Aligned_cols=107  Identities=24%  Similarity=0.236  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccC
Q 044746           77 FGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWM  156 (202)
Q Consensus        77 ~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~  156 (202)
                      ......+..|++..+++||+   .|++|+||+|+|++++.+|.+.|+||+.....+.....     ...+..|.|||...
T Consensus       144 ~~arl~lT~Q~I~lvA~Lh~---~GlVHgdi~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~-----~~~~~~~~PPe~~~  215 (288)
T PF14531_consen  144 FAARLSLTVQMIRLVANLHS---YGLVHGDIKPENFLLDQDGGVFLGDFSSLVRAGTRYRC-----SEFPVAFTPPELES  215 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---TTEEEST-SGGGEEE-TTS-EEE--GGGEEETTEEEEG-----GGS-TTTS-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhh---cceEecccceeeEEEcCCCCEEEcChHHHeecCceeec-----cCCCcccCChhhhh
Confidence            44456677999999999999   99999999999999999999999999877655432222     11256788999764


Q ss_pred             C--------CCCCchhhHHHHHHHHHHHHcCCCCCcchhcccc
Q 044746          157 P--------YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQ  191 (202)
Q Consensus       157 ~--------~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~~  191 (202)
                      .        ..++.+.|.|++|+++|.+..|+.||....++..
T Consensus       216 ~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~~~~  258 (288)
T PF14531_consen  216 CAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSSPEAD  258 (288)
T ss_dssp             HHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCGGGST
T ss_pred             hhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCCCcccc
Confidence            3        2478899999999999999999999997766544

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.50  E-value=7.4e-15  Score=111.84  Aligned_cols=99  Identities=11%  Similarity=0.117  Sum_probs=74.4

Q ss_pred             cceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceecc
Q 044746           53 TETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN  132 (202)
Q Consensus        53 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~  132 (202)
                      ...+++++++|.+|.++.   .++.    ....+++.++..+|+   .+++|+|++|.|++++.++ ++++|||......
T Consensus       117 ~~~lvmEyi~G~tL~~~~---~~~~----~~~~~i~~~l~~lH~---~gi~H~Dikp~Nili~~~g-i~liDfg~~~~~~  185 (232)
T PRK10359        117 TYIMLIEYIEGVELNDMP---EISE----DVKAKIKASIESLHQ---HGMVSGDPHKGNFIVSKNG-LRIIDLSGKRCTA  185 (232)
T ss_pred             CeEEEEEEECCccHHHhh---hccH----HHHHHHHHHHHHHHH---cCCccCCCChHHEEEeCCC-EEEEECCCccccc
Confidence            456899999999987763   2332    345699999999999   9999999999999999888 9999999876432


Q ss_pred             ccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHH
Q 044746          133 REHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV  176 (202)
Q Consensus       133 ~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el  176 (202)
                      .....              ..+.....++.++|+||+|+++..+
T Consensus       186 e~~a~--------------d~~vler~y~~~~di~~lg~~~~~~  215 (232)
T PRK10359        186 QRKAK--------------DRIDLERHYGIKNEIKDLGYYLLIY  215 (232)
T ss_pred             chhhH--------------HHHHHHhHhcccccccceeEeehHH
Confidence            11110              1133445566789999999887654

>smart00090 RIO RIO-like kinase

Probab=99.42  E-value=3.6e-13  Score=103.88  Aligned_cols=82  Identities=11%  Similarity=0.011  Sum_probs=66.3

Q ss_pred             ccccccccceEEEEEccCCchhhhh-ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCC-eEEecCCCCcEEEcCCCceEEe
Q 044746           46 NLVGSEDTETYIKGFLAMGPFYLLC-KKNILGFGQLREIEVSTSKGIAYLHEECRQK-IVHYDIKPESVLLDENFFPKAA  123 (202)
Q Consensus        46 ~~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~-iiHrdlk~~nil~~~~~~~kl~  123 (202)
                      ..+... ...++++++.++++.... ....+...+...++.|++.++.+||+   .+ ++|||+||+||+++ ++.++++
T Consensus       116 ~~~~~~-~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~g~iiH~Dikp~NIli~-~~~i~Li  190 (237)
T smart00090      116 KPIAWR-RNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLYK---EGELVHGDLSEYNILVH-DGKVVII  190 (237)
T ss_pred             eeeEec-CceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHHHHHh---cCCEEeCCCChhhEEEE-CCCEEEE
Confidence            344433 346889999998876554 44456666788999999999999999   88 99999999999999 8899999


Q ss_pred             eeecceecc
Q 044746          124 DFGLAKLYN  132 (202)
Q Consensus       124 dfgl~~~~~  132 (202)
                      |||.+....
T Consensus       191 DFg~a~~~~  199 (237)
T smart00090      191 DVSQSVELD  199 (237)
T ss_pred             EChhhhccC
Confidence            999887543

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.41  E-value=4.9e-13  Score=111.28  Aligned_cols=135  Identities=27%  Similarity=0.367  Sum_probs=105.2

Q ss_pred             ccceEEEEEccCCchhhhhccCC--CCHHHHHHHHHHHHHHHHHHHhCCCCCe-EEecCCCCcEEEcCCCceEEeeeecc
Q 044746           52 DTETYIKGFLAMGPFYLLCKKNI--LGFGQLREIEVSTSKGIAYLHEECRQKI-VHYDIKPESVLLDENFFPKAADFGLA  128 (202)
Q Consensus        52 ~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~i~~~l~~lH~~~~~~i-iHrdlk~~nil~~~~~~~kl~dfgl~  128 (202)
                      +...++.+++..|+|.+.+....  +++.=...+.++++.|+.|+|.   .+| .|+.|+..|++++..+.+|++|||+.
T Consensus        20 ~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~---s~i~~hg~l~s~nClvd~~w~lklt~~Gl~   96 (484)
T KOG1023|consen   20 PEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHN---SPIGYHGALKSSNCLVDSRWVLKLTDFGLN   96 (484)
T ss_pred             CceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhc---CcceeeeeeccccceeeeeEEEEechhhhc
Confidence            56678899999999999997654  6666678888999999999998   344 99999999999999999999999998


Q ss_pred             eeccccCcccccCCCCCCCcccCCcccCCC---C----CCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          129 KLYNREHTHITSTGRRRTPGCEAPELWMPY---S----VTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       129 ~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~---~----~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      ................-..-|.|||.+...   .    .+.+.|+||||++++|+++++.||+.....
T Consensus        97 ~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~  164 (484)
T KOG1023|consen   97 SLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLV  164 (484)
T ss_pred             ccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCcccccccc
Confidence            765321000111111124568999998763   1    456799999999999999999999875543

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=8e-14  Score=120.09  Aligned_cols=151  Identities=25%  Similarity=0.326  Sum_probs=119.0

Q ss_pred             cccccc------ccccceEEEEEccCCchhhhh-ccC--CCCHHHHHHHHHHHHHHHHHHH-hCCCCCeEEecCCCCcEE
Q 044746           44 FSNLVG------SEDTETYIKGFLAMGPFYLLC-KKN--ILGFGQLREIEVSTSKGIAYLH-EECRQKIVHYDIKPESVL  113 (202)
Q Consensus        44 ~~~~i~------~~~~~~~~~~~~~~~~l~~~~-~~~--~~~~~~~~~~~~~i~~~l~~lH-~~~~~~iiHrdlk~~nil  113 (202)
                      |.|+++      ...+.....++..++.++... ...  ..+......+..|+..++.|+| .   .++.|||+||+|.+
T Consensus        80 h~n~~~~~~~~~~~~~~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~---~~~~h~~ikP~n~~  156 (601)
T KOG0590|consen   80 HSNTVHMIEPSSSPRSYLLSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPE---NGVTHRDIKPSNSL  156 (601)
T ss_pred             cccccccCCccCCCcccccccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcc---cccccCCCCCccch
Confidence            666653      444555667777777777666 444  4777889999999999999999 6   89999999999999


Q ss_pred             EcCCC-ceEEeeeecceeccc-cCcccccCCCCC-CCcccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          114 LDENF-FPKAADFGLAKLYNR-EHTHITSTGRRR-TPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       114 ~~~~~-~~kl~dfgl~~~~~~-~~~~~~~~~~~g-t~~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      ++..+ ..+++|||+|..... ..........+| ++.|+|||...+. ......|+||.|+++.-+++|..|++.....
T Consensus       157 l~~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~  236 (601)
T KOG0590|consen  157 LDESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRK  236 (601)
T ss_pred             hccCCCcccCCCchhhccccccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCccccccc
Confidence            99998 999999999997665 443444455677 9999999998874 3456789999999999999999999876665


Q ss_pred             ccccccccc
Q 044746          190 GQEWFPKWG  198 (202)
Q Consensus       190 ~~~~~~~~~  198 (202)
                      .+ .+..|.
T Consensus       237 ~~-~~~~~~  244 (601)
T KOG0590|consen  237 DG-RYSSWK  244 (601)
T ss_pred             cc-cceeec
Confidence            53 444443

>PRK10345 hypothetical protein; Provisional

Probab=99.35  E-value=2.1e-12  Score=97.70  Aligned_cols=93  Identities=16%  Similarity=0.144  Sum_probs=66.2

Q ss_pred             cCCcHHHHHHhc-----cccccccc-------cccce---EEEEE--ccCCchhhhhccCCCCHHHHHHHHHHHHHHH-H
Q 044746           31 RFTSPQRMIAAD-----NFSNLVGS-------EDTET---YIKGF--LAMGPFYLLCKKNILGFGQLREIEVSTSKGI-A   92 (202)
Q Consensus        31 ~~~~~~~~~~~~-----~~~~~i~~-------~~~~~---~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l-~   92 (202)
                      .+..|.......     +|++++..       .+.+.   +++++  ..+++|.+++....+++.  ..++.+++.++ +
T Consensus        42 ~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~I~e~~G~~~~tL~~~l~~~~~~e~--~~~~~~~L~~l~~  119 (210)
T PRK10345         42 EIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQCRYEED--VAQLRQLLKKLKR  119 (210)
T ss_pred             HHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEEEecCCCCcchhHHHHHHcccccHh--HHHHHHHHHHHHH
Confidence            355555555555     56776631       11223   45677  446899999987777665  45678888887 9


Q ss_pred             HHHhCCCCCeEEecCCCCcEEEcC----CCceEEeeeecc
Q 044746           93 YLHEECRQKIVHYDIKPESVLLDE----NFFPKAADFGLA  128 (202)
Q Consensus        93 ~lH~~~~~~iiHrdlk~~nil~~~----~~~~kl~dfgl~  128 (202)
                      |||+   ++|+||||||+||+++.    ++.++|+|++.+
T Consensus       120 yLh~---~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~  156 (210)
T PRK10345        120 YLLD---NRIVTMELKPQNILCQRISESEVIPVVCDNIGE  156 (210)
T ss_pred             HHHH---CCEeecCCCHHHEEEeccCCCCCcEEEEECCCC
Confidence            9999   99999999999999973    347999995433

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.30  E-value=3.5e-12  Score=109.41  Aligned_cols=90  Identities=18%  Similarity=0.231  Sum_probs=71.1

Q ss_pred             cCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEE
Q 044746           31 RFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVH  104 (202)
Q Consensus        31 ~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiH  104 (202)
                      ++..|........++++..      ......++++++++++|..++.       ....++.+++.+|.+||+   .+++|
T Consensus       382 ~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~E~~~g~~L~~~l~-------~~~~~~~~i~~~L~~lH~---~giiH  451 (535)
T PRK09605        382 RTRAEARLLSEARRAGVPTPVIYDVDPEEKTIVMEYIGGKDLKDVLE-------GNPELVRKVGEIVAKLHK---AGIVH  451 (535)
T ss_pred             HHHHHHHHHHhhcccCCCeeEEEEEeCCCCEEEEEecCCCcHHHHHH-------HHHHHHHHHHHHHHHHHh---CCCcc
Confidence            3555655565555554331      2334568999999999987764       467899999999999999   99999


Q ss_pred             ecCCCCcEEEcCCCceEEeeeecceec
Q 044746          105 YDIKPESVLLDENFFPKAADFGLAKLY  131 (202)
Q Consensus       105 rdlk~~nil~~~~~~~kl~dfgl~~~~  131 (202)
                      ||+||+||++ .++.++++|||+++..
T Consensus       452 rDlkp~NILl-~~~~~~liDFGla~~~  477 (535)
T PRK09605        452 GDLTTSNFIV-RDDRLYLIDFGLGKYS  477 (535)
T ss_pred             CCCChHHEEE-ECCcEEEEeCcccccC
Confidence            9999999999 5778999999999764

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.28  E-value=7.6e-12  Score=94.57  Aligned_cols=72  Identities=21%  Similarity=0.288  Sum_probs=62.8

Q ss_pred             ccceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746           52 DTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus        52 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ....++++++++++|..+......   ....++.+++.+|.++|+   .+++|+|++|.||+++ ++.++++|||++..
T Consensus        72 ~~~~lv~e~~~G~~L~~~~~~~~~---~~~~i~~~i~~~l~~lH~---~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         72 ENFIIVMEYIEGEPLKDLINSNGM---EELELSREIGRLVGKLHS---AGIIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             CCCEEEEEEeCCcCHHHHHHhccH---HHHHHHHHHHHHHHHHHh---CCcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            445688999999999888754332   788999999999999999   9999999999999999 78899999999875

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.26  E-value=1.5e-11  Score=92.32  Aligned_cols=71  Identities=13%  Similarity=0.088  Sum_probs=60.3

Q ss_pred             cceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceec
Q 044746           53 TETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY  131 (202)
Q Consensus        53 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~  131 (202)
                      ...+++++++++++......     .....++.+++.++.++|+   .+++|+|++|.||+++.++.++|+|||++...
T Consensus       105 ~~~lv~e~~~g~~L~~~~~~-----~~~~~~~~~i~~~l~~lh~---~gi~H~Dl~p~Nill~~~~~~~liDfg~~~~~  175 (198)
T cd05144         105 RHAVVMEYIDGVELYRVRVL-----EDPEEVLDEILEEIVKAYK---HGIIHGDLSEFNILVDDDEKIYIIDWPQMVST  175 (198)
T ss_pred             CceEEEEEeCCcchhhcccc-----ccHHHHHHHHHHHHHHHHH---CCCCcCCCCcccEEEcCCCcEEEEECCccccC
Confidence            34688999999888655431     3456788999999999999   99999999999999999999999999998644

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.22  E-value=1.9e-11  Score=91.56  Aligned_cols=69  Identities=20%  Similarity=0.276  Sum_probs=59.2

Q ss_pred             cceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceec
Q 044746           53 TETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY  131 (202)
Q Consensus        53 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~  131 (202)
                      ...++++++++++|.........      .++.+++.+|.++|+   .+++|+|++|.||+++ ++.++++|||++...
T Consensus        71 ~~~lv~e~~~g~~l~~~~~~~~~------~~~~~i~~~l~~lH~---~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~~  139 (199)
T TIGR03724        71 NKTIVMEYIEGKPLKDVIEEGND------ELLREIGRLVGKLHK---AGIVHGDLTTSNIIVR-DDKLYLIDFGLGKYS  139 (199)
T ss_pred             CCEEEEEEECCccHHHHHhhcHH------HHHHHHHHHHHHHHH---CCeecCCCCcceEEEE-CCcEEEEECCCCcCC
Confidence            34688999999999877644321      789999999999999   9999999999999999 789999999998753

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.20  E-value=4.6e-11  Score=92.33  Aligned_cols=69  Identities=20%  Similarity=0.171  Sum_probs=59.1

Q ss_pred             eEEEEEccC-CchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746           55 TYIKGFLAM-GPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus        55 ~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      .++++++++ .+|..++....++...    ..+++.++.+||+   .||+||||||.|||++.++.++|+|||.+..
T Consensus       122 ~lV~e~l~G~~~L~~~l~~~~l~~~~----~~~i~~~l~~lH~---~GI~HrDlkp~NILv~~~~~v~LIDfg~~~~  191 (239)
T PRK01723        122 DILIERIEGARDLVALLQEAPLSEEQ----WQAIGQLIARFHD---AGVYHADLNAHNILLDPDGKFWLIDFDRGEL  191 (239)
T ss_pred             eEEEEecCCCCCHHHHHhcCCCCHHH----HHHHHHHHHHHHH---CCCCCCCCCchhEEEcCCCCEEEEECCCccc
Confidence            378888887 6888887776666543    5789999999999   9999999999999999888999999998865

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.13  E-value=1.3e-10  Score=86.19  Aligned_cols=75  Identities=17%  Similarity=0.045  Sum_probs=57.7

Q ss_pred             cceEEEEEccCCchhhh-hccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceec
Q 044746           53 TETYIKGFLAMGPFYLL-CKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY  131 (202)
Q Consensus        53 ~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~  131 (202)
                      ...+++++++++.+... +...... .+...++.+++.++.++|+.  .+++|+|+||+||+++ ++.++++|||.+...
T Consensus        89 ~~~lv~e~~~g~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~lh~~--~~ivH~Dl~p~Nili~-~~~~~liDfg~a~~~  164 (187)
T cd05119          89 RHVLVMEFIGGDGIPAPRLKDVRLL-EDPEELYDQILELMRKLYRE--AGLVHGDLSEYNILVD-DGKVYIIDVPQAVEI  164 (187)
T ss_pred             CCEEEEEEeCCCCccChhhhhhhhc-ccHHHHHHHHHHHHHHHhhc--cCcCcCCCChhhEEEE-CCcEEEEECcccccc
Confidence            34688999988543211 1111111 67889999999999999973  7999999999999999 889999999998644

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.11  E-value=2.4e-10  Score=80.93  Aligned_cols=82  Identities=15%  Similarity=0.170  Sum_probs=64.9

Q ss_pred             ccccccccc---ccceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCc
Q 044746           43 NFSNLVGSE---DTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF  119 (202)
Q Consensus        43 ~~~~~i~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~  119 (202)
                      ..+.+++..   +...++++++.++++..+      +......++.+++.++..+|.....+++|+|++|.|++++..+.
T Consensus        54 ~~p~~~~~~~~~~~~~~v~e~~~g~~~~~~------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~  127 (155)
T cd05120          54 PVPKVLASGESDGWSYLLMEWIEGETLDEV------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKI  127 (155)
T ss_pred             CCCeEEEEcCCCCccEEEEEecCCeecccC------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcE
Confidence            344555433   357788888888777544      66777888999999999999843347999999999999998899


Q ss_pred             eEEeeeeccee
Q 044746          120 PKAADFGLAKL  130 (202)
Q Consensus       120 ~kl~dfgl~~~  130 (202)
                      ++++|||.+..
T Consensus       128 ~~l~Df~~~~~  138 (155)
T cd05120         128 LGIIDWEYAGY  138 (155)
T ss_pred             EEEEecccccC
Confidence            99999998764

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.03  E-value=2.2e-10  Score=101.39  Aligned_cols=183  Identities=17%  Similarity=0.181  Sum_probs=123.6

Q ss_pred             ccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-CCCH
Q 044746            5 RNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-ILGF   77 (202)
Q Consensus         5 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-~~~~   77 (202)
                      +..+++.+.+.++.+...............+.....+..+|-+++      ...-..+.+++..++.|...++.- ..+.
T Consensus       824 ~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rsP~~L~~~~~~~~~~~Skl~~~~~~sa  903 (1205)
T KOG0606|consen  824 SPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPCRSPLPLVGHYLNGGDLPSKLHNSGCLSA  903 (1205)
T ss_pred             CccccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCCCCCcchhhHHhccCCchhhhhcCCCccc
Confidence            344444445555554444444433333433333333333343332      222334667777777776665443 3666


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceecccc-----C-----------------
Q 044746           78 GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE-----H-----------------  135 (202)
Q Consensus        78 ~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~-----~-----------------  135 (202)
                      +-.+.+...+..++++||+   ..+.|||++|.|+++..++..++.|||.......-     .                 
T Consensus       904 epaRs~i~~~vqs~e~L~s---~~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~  980 (1205)
T KOG0606|consen  904 EPARSPILERVQSLESLHS---SLRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSER  980 (1205)
T ss_pred             ccccchhHHHHhhhhcccc---chhhcccccccchhhcccCCcccCccccccccccccCcCCcccccccCcccccccccc
Confidence            6677788888899999998   66999999999999999999999999844321100     0                 


Q ss_pred             ----cc---cccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          136 ----TH---ITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       136 ----~~---~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                          ..   .......||+.|.+||...+......+|+|+.|++++|.++|.+||....++.
T Consensus       981 ~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~tpq~ 1042 (1205)
T KOG0606|consen  981 RPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAETPQQ 1042 (1205)
T ss_pred             ccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCcchhh
Confidence                00   01123568999999999999998999999999999999999999999877654

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.99  E-value=1.2e-09  Score=86.02  Aligned_cols=130  Identities=18%  Similarity=0.290  Sum_probs=97.8

Q ss_pred             cccceEEEEEccCCchhhhhccC-----CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeee
Q 044746           51 EDTETYIKGFLAMGPFYLLCKKN-----ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF  125 (202)
Q Consensus        51 ~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~df  125 (202)
                      .....++.++++.|++..++++.     .+......+++.||++||.|||+ |..+|+|+++..+.|++..+|.+|+.-.
T Consensus       144 ~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs-~~PpiihgnlTc~tifiq~ngLIkig~~  222 (458)
T KOG1266|consen  144 KPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHS-CDPPIIHGNLTCDTIFIQHNGLIKIGSV  222 (458)
T ss_pred             ccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhc-cCCccccCCcchhheeecCCceEEeccc
Confidence            34456889999999998888543     47788899999999999999997 5689999999999999999998887643


Q ss_pred             ecceeccccCcc--cccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCC
Q 044746          126 GLAKLYNREHTH--ITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR  181 (202)
Q Consensus       126 gl~~~~~~~~~~--~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~  181 (202)
                      ............  .......+.++|.+||.-...+.+..+|||+||+...||..++-
T Consensus       223 ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemailEi  280 (458)
T KOG1266|consen  223 APDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAILEI  280 (458)
T ss_pred             CccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHHhee
Confidence            322211111111  11122345788999998776677889999999999999877653

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.92  E-value=2.7e-09  Score=89.49  Aligned_cols=128  Identities=22%  Similarity=0.219  Sum_probs=99.5

Q ss_pred             eEEEEEccCCchhhhhccC--CCCHHHHHHHHHHHHH----HHHHHHhCCCCCeEEecCCCCcEEEcCC-CceEEeeeec
Q 044746           55 TYIKGFLAMGPFYLLCKKN--ILGFGQLREIEVSTSK----GIAYLHEECRQKIVHYDIKPESVLLDEN-FFPKAADFGL  127 (202)
Q Consensus        55 ~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~i~~----~l~~lH~~~~~~iiHrdlk~~nil~~~~-~~~kl~dfgl  127 (202)
                      .++..-..+.++..+|...  .++.........+...    ||..+|+   ..++|-|+||.||++..+ ..+++.|||+
T Consensus       193 lfiqtE~~~~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~hs---~~~~~~~~kp~~i~~~~~~~s~~~~df~~  269 (524)
T KOG0601|consen  193 LFIQTELCGESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHLHS---NNIVHDDLKPANIFTTSDWTSCKLTDFGL  269 (524)
T ss_pred             ceeeeccccchhHHhhhcccccCCchhhhhHHhhhhhcccccccccCC---CcccccccchhheecccccceeecCCcce
Confidence            3555556667888888654  3777888888888888    9999999   999999999999999998 8899999999


Q ss_pred             ceeccccCcccc---cCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          128 AKLYNREHTHIT---STGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       128 ~~~~~~~~~~~~---~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      ...++.......   .....|...|++||...+ .++...|++++|.+..+..++..+....
T Consensus       270 v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~-l~~~~~di~sl~ev~l~~~l~~~~~~~g  330 (524)
T KOG0601|consen  270 VSKISDGNFSSVFKVSKRPEGDCIYAAKELLNG-LATFASDIFSLGEVILEAILGSHLPSVG  330 (524)
T ss_pred             eEEccCCccccceeeeecCCCCceEeChhhhcc-ccchHhhhcchhhhhHhhHhhcccccCC
Confidence            987765432111   122245778999999876 4578899999999999988877665544

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.80  E-value=9.6e-09  Score=74.78  Aligned_cols=75  Identities=21%  Similarity=0.132  Sum_probs=55.9

Q ss_pred             ccccccc-ccceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCC-----eEEecCCCCcEEEcCCC
Q 044746           45 SNLVGSE-DTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQK-----IVHYDIKPESVLLDENF  118 (202)
Q Consensus        45 ~~~i~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~-----iiHrdlk~~nil~~~~~  118 (202)
                      |.++... +.+.++++++++.++...    .   ........+++.+|..||+   .+     ++|+|++|.||+++ ++
T Consensus        56 P~~~~~~~~~~~lv~e~i~G~~l~~~----~---~~~~~~~~~l~~~l~~LH~---~~~~~~~~~HgD~~~~Nil~~-~~  124 (170)
T cd05151          56 PKLYYFDPETGVLITEFIEGSELLTE----D---FSDPENLEKIAKLLKKLHS---SPLPDLVPCHNDLLPGNFLLD-DG  124 (170)
T ss_pred             CceEEEeCCCCeEEEEecCCCccccc----c---ccCHHHHHHHHHHHHHHhC---CCCCCceeecCCCCcCcEEEE-CC
Confidence            4455433 235788999999877542    1   1123456889999999998   55     59999999999998 66


Q ss_pred             ceEEeeeeccee
Q 044746          119 FPKAADFGLAKL  130 (202)
Q Consensus       119 ~~kl~dfgl~~~  130 (202)
                      .++++||+.+..
T Consensus       125 ~~~liDf~~a~~  136 (170)
T cd05151         125 RLWLIDWEYAGM  136 (170)
T ss_pred             eEEEEecccccC
Confidence            799999998753

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.74  E-value=7.2e-08  Score=72.06  Aligned_cols=84  Identities=13%  Similarity=0.040  Sum_probs=62.7

Q ss_pred             cccccccccccceEEEEEccCCchh-hhhccCCCCHHHHHHHHHHHHHHHHHH-HhCCCCCeEEecCCCCcEEEcCCCce
Q 044746           43 NFSNLVGSEDTETYIKGFLAMGPFY-LLCKKNILGFGQLREIEVSTSKGIAYL-HEECRQKIVHYDIKPESVLLDENFFP  120 (202)
Q Consensus        43 ~~~~~i~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~i~~~l~~l-H~~~~~~iiHrdlk~~nil~~~~~~~  120 (202)
                      +.|..+.. ....++|+++.++.+. ..++...++..+...+..+++.++..+ |.   .+++|+||++.||++. ++.+
T Consensus        89 ~vP~pi~~-~~~~lvME~Ig~~~~~~~~Lkd~~~~~~~~~~i~~~i~~~l~~l~H~---~glVHGDLs~~NIL~~-~~~v  163 (197)
T cd05146          89 PCPEVVVL-KKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLYKE---CNLVHADLSEYNMLWH-DGKV  163 (197)
T ss_pred             CCCeEEEe-cCCEEEEEEcCCCCccchhhhccccCHHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEE-CCcE
Confidence            44455554 4566889998765332 123333456667778889999999988 88   8999999999999997 4679


Q ss_pred             EEeeeecceec
Q 044746          121 KAADFGLAKLY  131 (202)
Q Consensus       121 kl~dfgl~~~~  131 (202)
                      .++|||.+...
T Consensus       164 ~iIDF~qav~~  174 (197)
T cd05146         164 WFIDVSQSVEP  174 (197)
T ss_pred             EEEECCCceeC
Confidence            99999988654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.56  E-value=3e-08  Score=83.28  Aligned_cols=168  Identities=18%  Similarity=0.212  Sum_probs=107.9

Q ss_pred             CCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc------cccceEEEEEccCCchhhhh-ccCCCCHHH
Q 044746            7 RGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS------EDTETYIKGFLAMGPFYLLC-KKNILGFGQ   79 (202)
Q Consensus         7 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~   79 (202)
                      .++..++++.+.+.+.... .+...+..-.......-|...+|.      ...++.-.++++++++.... -...+....
T Consensus       289 ~~~~~Y~~ke~~~~l~~~~-~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~ip~e~~~~~s~~l~~~~~~~~d~~~  367 (524)
T KOG0601|consen  289 EGDCIYAAKELLNGLATFA-SDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYIPLEFCEGGSSSLRSVTSQMLDEDP  367 (524)
T ss_pred             CCCceEeChhhhccccchH-hhhcchhhhhHhhHhhcccccCCCCCCccccccccCchhhhcCcchhhhhHHHHhcCcch
Confidence            4556666666554443332 222223333333333444445551      12233445677777654433 223477788


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC-CceEEeeeecceeccccCcccccCCCCCCCcc-cCCcccCC
Q 044746           80 LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN-FFPKAADFGLAKLYNREHTHITSTGRRRTPGC-EAPELWMP  157 (202)
Q Consensus        80 ~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~-~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y-~aPe~~~~  157 (202)
                      .+++..|++.++.++|+   +.++|+|+||.||++..+ +..++.|||++..+........    -.+..| .+++....
T Consensus       368 ~~~~~~q~~~~l~~i~s---~~~~~~d~~psni~i~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~r~~p~~~~~~e~  440 (524)
T KOG0601|consen  368 RLRLTAQILTALNVIHS---KLFVHLDVKPSNILISNDGFFSKLGDFGCWTRLAFSSGVFH----HIDRLYPIAEILLED  440 (524)
T ss_pred             hhhhHHHHHhccccccc---hhhhcccccccceeeccchhhhhccccccccccceeccccc----ccccccccchhhccc
Confidence            99999999999999998   999999999999999886 7889999998864321111111    112233 35556666


Q ss_pred             CCCCchhhHHHHHHHHHHHHcCCCC
Q 044746          158 YSVTQKCDVFSFGMLLFEVVGRRRN  182 (202)
Q Consensus       158 ~~~~~~~Diws~G~~l~el~~g~~p  182 (202)
                      ..+..++|++|+|..+.+.+++.+-
T Consensus       441 ~~~~~~~~~~sl~~~~~e~~~~~~l  465 (524)
T KOG0601|consen  441 YPHLSKADIFSLGLSVDEAITGSPL  465 (524)
T ss_pred             cccccccccccccccccccccCccc
Confidence            7888999999999999998888753

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.54  E-value=5.3e-07  Score=73.80  Aligned_cols=110  Identities=17%  Similarity=0.148  Sum_probs=88.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      ...|.-.++.++.++.+..-||.   .|-.-+|++++|+|++.++.+.|.|-.......+   .....+..|...|.+||
T Consensus       113 ~~~w~fllrvaRnlA~aFA~lH~---~Gh~vGDVn~~~~lVsd~~~V~LVdsDsfqi~~n---g~~~~cpVg~~eftPPE  186 (637)
T COG4248         113 HCAWDFLLRVARNLASAFATLHE---HGHVVGDVNQNSFLVSDDSKVVLVDSDSFQINAN---GTLHLCPVGVSEFTPPE  186 (637)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHh---cCCcccccCccceeeecCceEEEEcccceeeccC---CceEecccCccccCCHH
Confidence            37888999999999999999999   8999999999999999999999987543333222   22234567889999999


Q ss_pred             ccC-----CCCCCchhhHHHHHHHHHHHHcC-CCCCcchhcc
Q 044746          154 LWM-----PYSVTQKCDVFSFGMLLFEVVGR-RRNLEKEISE  189 (202)
Q Consensus       154 ~~~-----~~~~~~~~Diws~G~~l~el~~g-~~p~~~~~~~  189 (202)
                      ...     +..-+...|.+-+|+++++++.| +.||.+....
T Consensus       187 lQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~  228 (637)
T COG4248         187 LQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLI  228 (637)
T ss_pred             HhccccccccCCCccccchhHHHHHHHHHhcCCCCCCccccc
Confidence            876     33445678999999999998875 9999876543

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.50  E-value=2.8e-07  Score=77.32  Aligned_cols=77  Identities=12%  Similarity=0.187  Sum_probs=58.7

Q ss_pred             ccceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHH-HHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746           52 DTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSK-GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus        52 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      +...+++++++++++.++........ ....++..++. .+..+|.   .|++|+|++|.||++..++.++++|||++..
T Consensus       231 ~~~vLvmE~i~G~~L~~~~~~~~~~~-~~~~ia~~~~~~~l~ql~~---~g~~H~D~hPgNilv~~~g~i~liDfG~~~~  306 (437)
T TIGR01982       231 SERVLTMEWIDGIPLSDIAALDEAGL-DRKALAENLARSFLNQVLR---DGFFHADLHPGNIFVLKDGKIIALDFGIVGR  306 (437)
T ss_pred             CCceEEEEeECCcccccHHHHHhcCC-CHHHHHHHHHHHHHHHHHh---CCceeCCCCcccEEECCCCcEEEEeCCCeeE
Confidence            34568999999999877654321111 23456666655 4677887   8999999999999999999999999999987


Q ss_pred             cc
Q 044746          131 YN  132 (202)
Q Consensus       131 ~~  132 (202)
                      ++
T Consensus       307 l~  308 (437)
T TIGR01982       307 LS  308 (437)
T ss_pred             CC
Confidence            65

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.49  E-value=6e-07  Score=70.46  Aligned_cols=75  Identities=20%  Similarity=0.091  Sum_probs=62.3

Q ss_pred             cceEEEEEccCC-chhhhhc---cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC-------CCceE
Q 044746           53 TETYIKGFLAMG-PFYLLCK---KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE-------NFFPK  121 (202)
Q Consensus        53 ~~~~~~~~~~~~-~l~~~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~-------~~~~k  121 (202)
                      ...++++++++. +|.+++.   ....+......++.+++..+.-||+   .|++|+|+++.|||++.       +..+.
T Consensus       109 ~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~---~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~  185 (268)
T PRK15123        109 TSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHA---AGINHRDCYICHFLLHLPFPGREEDLKLS  185 (268)
T ss_pred             eeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHH---CcCccCCCChhhEEEeccccCCCCCceEE
Confidence            356888888876 7877764   3446667788999999999999999   99999999999999975       46789


Q ss_pred             Eeeeeccee
Q 044746          122 AADFGLAKL  130 (202)
Q Consensus       122 l~dfgl~~~  130 (202)
                      ++||+.++.
T Consensus       186 LIDl~r~~~  194 (268)
T PRK15123        186 VIDLHRAQI  194 (268)
T ss_pred             EEECCcccc
Confidence            999998753

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.49  E-value=5.3e-07  Score=66.12  Aligned_cols=69  Identities=17%  Similarity=0.248  Sum_probs=56.8

Q ss_pred             ccceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746           52 DTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus        52 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..+.+++++.++..|.+.+...      ...++..+-.-+.-||.   .+|+|+||.++|+++.+.. +.++||||+..
T Consensus        72 ~~~~I~me~I~G~~lkd~l~~~------~~~~~r~vG~~vg~lH~---~givHGDLTtsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642          72 DNGLIVMEYIEGELLKDALEEA------RPDLLREVGRLVGKLHK---AGIVHGDLTTSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             CCCEEEEEEeCChhHHHHHHhc------chHHHHHHHHHHHHHHh---cCeecCCCccceEEEeCCc-EEEEECCcccc
Confidence            4456889999998888777655      24567777777888999   9999999999999998765 89999999974

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.37  E-value=5.3e-07  Score=77.04  Aligned_cols=72  Identities=14%  Similarity=0.137  Sum_probs=50.6

Q ss_pred             ccceEEEEEccCCchhhhh--ccCC-----CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC----ce
Q 044746           52 DTETYIKGFLAMGPFYLLC--KKNI-----LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF----FP  120 (202)
Q Consensus        52 ~~~~~~~~~~~~~~l~~~~--~~~~-----~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~----~~  120 (202)
                      +...++++++.|+++.++.  ....     +....+..++.|+       ..   .|++|+|++|.||+++.++    .+
T Consensus       234 t~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qi-------f~---~GffHaDpHPGNIlv~~~g~~~~~i  303 (537)
T PRK04750        234 SETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQV-------FR---DGFFHADMHPGNIFVSYDPPENPRY  303 (537)
T ss_pred             CCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHH-------Hh---CCeeeCCCChHHeEEecCCCCCCeE
Confidence            3455889999999986642  2222     2222233333333       23   7999999999999999887    89


Q ss_pred             EEeeeecceeccc
Q 044746          121 KAADFGLAKLYNR  133 (202)
Q Consensus       121 kl~dfgl~~~~~~  133 (202)
                      ++.|||+...++.
T Consensus       304 ~llDFGivg~l~~  316 (537)
T PRK04750        304 IALDFGIVGSLNK  316 (537)
T ss_pred             EEEecceEEECCH
Confidence            9999999987643

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.36  E-value=5e-06  Score=71.34  Aligned_cols=162  Identities=14%  Similarity=0.135  Sum_probs=97.9

Q ss_pred             CCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc----cccceEEEEEccCCchhhhhccCCCCHHHHHH
Q 044746            7 RGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS----EDTETYIKGFLAMGPFYLLCKKNILGFGQLRE   82 (202)
Q Consensus         7 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   82 (202)
                      +..+..|.+.+-+....   +...........+.+.+||+++..    ...+.+|...-.-.+|..+++.  ++.....-
T Consensus        34 k~~~~~vsVF~~~~~~~---~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~Pl~~~lk~--l~~~~v~~  108 (690)
T KOG1243|consen   34 KADGGPVSVFVYKRSNG---EVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVRPLETVLKE--LGKEEVCL  108 (690)
T ss_pred             eccCCceEEEEEeCCCc---hhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccccHHHHHHH--hHHHHHHH
Confidence            34444555544333322   222223444556678899988731    1222233322223344444432  23555666


Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCc
Q 044746           83 IEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQ  162 (202)
Q Consensus        83 ~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~  162 (202)
                      -+.||+.||.|||.-  .+++|++|.-+.++++..|.-||++|.++........  .......-..|..|+.+....  -
T Consensus       109 Gl~qIl~AL~FL~~d--~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~--~~~~~~~~~s~~~P~~~~~s~--~  182 (690)
T KOG1243|consen  109 GLFQILAALSFLNDD--CNLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNA--PAKSLYLIESFDDPEEIDPSE--W  182 (690)
T ss_pred             HHHHHHHHHHHHhcc--CCeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCc--ccccchhhhcccChhhcCccc--c
Confidence            779999999999863  7999999999999999999999999987753321110  001111122355565443322  3


Q ss_pred             hhhHHHHHHHHHHHHcC
Q 044746          163 KCDVFSFGMLLFEVVGR  179 (202)
Q Consensus       163 ~~Diws~G~~l~el~~g  179 (202)
                      ..|.|-|||+++|++.|
T Consensus       183 s~D~~~Lg~li~el~ng  199 (690)
T KOG1243|consen  183 SIDSWGLGCLIEELFNG  199 (690)
T ss_pred             chhhhhHHHHHHHHhCc
Confidence            46999999999999999

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.34  E-value=2.2e-06  Score=62.93  Aligned_cols=77  Identities=21%  Similarity=0.230  Sum_probs=57.8

Q ss_pred             cccceEEEEEccCC-chhhhhccC---CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC---ceEEe
Q 044746           51 EDTETYIKGFLAMG-PFYLLCKKN---ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF---FPKAA  123 (202)
Q Consensus        51 ~~~~~~~~~~~~~~-~l~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~---~~kl~  123 (202)
                      ...+.+||+++++. ++.++....   .........++..+-..+.-||.   +++||+||..+||++..++   .+.++
T Consensus        82 ~~~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~---ndiiHGDLTTSNill~~~~~~~~~~lI  158 (229)
T KOG3087|consen   82 TYGGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHD---NDIIHGDLTTSNILLRSDGNQITPILI  158 (229)
T ss_pred             cCCCeEEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhh---CCeecccccccceEEecCCCcCceEEE
Confidence            44567999999873 455554222   22223337889999999999999   9999999999999997654   35799


Q ss_pred             eeeccee
Q 044746          124 DFGLAKL  130 (202)
Q Consensus       124 dfgl~~~  130 (202)
                      |||++..
T Consensus       159 dfgls~~  165 (229)
T KOG3087|consen  159 DFGLSSV  165 (229)
T ss_pred             eecchhc
Confidence            9999864

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.31  E-value=2.6e-06  Score=64.39  Aligned_cols=74  Identities=24%  Similarity=0.241  Sum_probs=61.9

Q ss_pred             ceEEEEEccCC-chhhhhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC---ceEEeeeecc
Q 044746           54 ETYIKGFLAMG-PFYLLCKK-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF---FPKAADFGLA  128 (202)
Q Consensus        54 ~~~~~~~~~~~-~l~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~---~~kl~dfgl~  128 (202)
                      ..++++.+++. +|..+... ...+......++.+++..+.-||+   .|++|+|+++.|||++.+.   .+.++||+.+
T Consensus        92 s~lite~l~~~~~L~~~~~~~~~~~~~~~~~ll~~l~~~i~~lH~---~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~  168 (206)
T PF06293_consen   92 SYLITEALPGAQDLRDLLQQWEQLDPSQRRELLRALARLIAKLHD---AGIYHGDLNPSNILVDPDDGQYRFYLIDLDRM  168 (206)
T ss_pred             EEEEEEeCCCcccHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH---CcCCCCCCCcccEEEeCCCCceeEEEEcchhc
Confidence            35777888774 67777765 236677888999999999999999   9999999999999998876   7899999877


Q ss_pred             ee
Q 044746          129 KL  130 (202)
Q Consensus       129 ~~  130 (202)
                      +.
T Consensus       169 ~~  170 (206)
T PF06293_consen  169 RF  170 (206)
T ss_pred             ee
Confidence            64

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.21  E-value=1.1e-05  Score=60.89  Aligned_cols=77  Identities=21%  Similarity=0.155  Sum_probs=60.8

Q ss_pred             cceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCC----------------------------------
Q 044746           53 TETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEEC----------------------------------   98 (202)
Q Consensus        53 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~----------------------------------   98 (202)
                      ...++++++++.++........++..+...++.+++.+|..||+..                                  
T Consensus        74 ~~~~v~e~i~G~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (223)
T cd05154          74 TPFYVMERVDGRVLRDRLLRPELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDE  153 (223)
T ss_pred             CceEEEEEeCCEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccc
Confidence            4568999999988876554356777888888888988888888521                                  


Q ss_pred             -------------------CCCeEEecCCCCcEEEcC--CCceEEeeeecce
Q 044746           99 -------------------RQKIVHYDIKPESVLLDE--NFFPKAADFGLAK  129 (202)
Q Consensus        99 -------------------~~~iiHrdlk~~nil~~~--~~~~kl~dfgl~~  129 (202)
                                         ...++|+|+.+.||+++.  ++.+.++||+.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~  205 (223)
T cd05154         154 PPAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELAT  205 (223)
T ss_pred             cHHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEeccccc
Confidence                               145699999999999988  5678999998765

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.13  E-value=5.1e-06  Score=61.77  Aligned_cols=74  Identities=23%  Similarity=0.223  Sum_probs=50.2

Q ss_pred             cceEEEEEcc--CCchhhhhccCCCCHHHHHHHHHHHHHHHHH-HHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecce
Q 044746           53 TETYIKGFLA--MGPFYLLCKKNILGFGQLREIEVSTSKGIAY-LHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK  129 (202)
Q Consensus        53 ~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~-lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~  129 (202)
                      -..++|++++  +.++..+.. ..++..+...+..+++..+.. +|.   .+++|+||.+.||+++.+ .+.++|||.+.
T Consensus        80 ~~~ivME~I~~~G~~~~~l~~-~~~~~~~~~~~~~~il~~~~~~~~~---~givHGDLs~~NIlv~~~-~~~iIDf~qav  154 (188)
T PF01163_consen   80 RNVIVMEYIGEDGVPLPRLKD-VDLSPEEPKELLEEILEEIIKMLHK---AGIVHGDLSEYNILVDDG-KVYIIDFGQAV  154 (188)
T ss_dssp             TTEEEEE--EETTEEGGCHHH-CGGGGSTHHHHHHHHHHHHHHHHHC---TTEEESS-STTSEEEETT-CEEE--GTTEE
T ss_pred             CCEEEEEecCCCccchhhHHh-ccccchhHHHHHHHHHHHHHHHHHh---cCceecCCChhhEEeecc-eEEEEecCcce
Confidence            3458999998  555544333 222245567778888885555 567   899999999999999877 89999999886


Q ss_pred             ec
Q 044746          130 LY  131 (202)
Q Consensus       130 ~~  131 (202)
                      ..
T Consensus       155 ~~  156 (188)
T PF01163_consen  155 DS  156 (188)
T ss_dssp             ET
T ss_pred             ec
Confidence            54

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=97.99  E-value=1.1e-06  Score=75.52  Aligned_cols=101  Identities=26%  Similarity=0.355  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc--ccc-----CCCCCCCcccCCcccC
Q 044746           84 EVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH--ITS-----TGRRRTPGCEAPELWM  156 (202)
Q Consensus        84 ~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~--~~~-----~~~~gt~~y~aPe~~~  156 (202)
                      +.+.+.|+.|+|..  .+++|+++.|++|.+...+..|++-|+.+.........  ...     ....-..-|.|||++.
T Consensus       105 l~~v~dgl~flh~s--Ak~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~  182 (700)
T KOG2137|consen  105 LGNVADGLAFLHRS--AKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLL  182 (700)
T ss_pred             hhcccchhhhhccC--cceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhc
Confidence            34555899999984  79999999999999999999999998877643321110  000     0011135699999999


Q ss_pred             CCCCCchhhHHHHHHHHHHHH-cCCCCCcch
Q 044746          157 PYSVTQKCDVFSFGMLLFEVV-GRRRNLEKE  186 (202)
Q Consensus       157 ~~~~~~~~Diws~G~~l~el~-~g~~p~~~~  186 (202)
                      +..-+.++|++|+|++++.+. .|+.-+...
T Consensus       183 ~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~  213 (700)
T KOG2137|consen  183 GTTNTPASDVFSLGVLIYTIYNGGKSIIAAN  213 (700)
T ss_pred             cccccccccceeeeeEEEEEecCCcchhhcc
Confidence            877889999999999999988 555555443

>PRK09902 hypothetical protein; Provisional

Probab=97.75  E-value=0.00015  Score=54.79  Aligned_cols=72  Identities=6%  Similarity=-0.096  Sum_probs=57.1

Q ss_pred             eEEEEEccC-CchhhhhccCC---CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCc--eEEeeeecc
Q 044746           55 TYIKGFLAM-GPFYLLCKKNI---LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF--PKAADFGLA  128 (202)
Q Consensus        55 ~~~~~~~~~-~~l~~~~~~~~---~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~--~kl~dfgl~  128 (202)
                      .++.+-+.+ .+|..++....   .+......+..+++..+.-||+   .++.|+|+.+.||+++..+.  ++++||.-+
T Consensus       101 ~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~---~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~  177 (216)
T PRK09902        101 LLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHS---VNRQHGCCYVRHIYVKTEGKAEAGFLDLEKS  177 (216)
T ss_pred             EEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHhheeecCCCCeeEEEEEhhcc
Confidence            355554443 46777775543   4677788999999999999999   99999999999999986666  899999766


Q ss_pred             e
Q 044746          129 K  129 (202)
Q Consensus       129 ~  129 (202)
                      +
T Consensus       178 r  178 (216)
T PRK09902        178 R  178 (216)
T ss_pred             c
Confidence            5

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=97.43  E-value=0.0025  Score=53.98  Aligned_cols=88  Identities=14%  Similarity=0.203  Sum_probs=67.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ...++...-.++.|+..||.++|+   .|+.-+-|.+.+|++.++-+++++..|.......+..              +|
T Consensus       388 ~~~~e~~lW~y~~QLtaaL~sIHs---sGLAck~L~~~kIlv~G~~RIriS~C~i~Dvl~~d~~--------------~~  450 (655)
T KOG3741|consen  388 LKAPEEVLWSYISQLTAALYSIHS---SGLACKTLDLKKILVTGKMRIRISGCGIMDVLQEDPT--------------EP  450 (655)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHh---cCceeecccHhHeEeeCcceEEEecccceeeecCCCC--------------cc
Confidence            357788899999999999999999   8999999999999999888888886665544332220              11


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCC
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRN  182 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p  182 (202)
                        +..   -.+-|.-.+|.++..|.||..-
T Consensus       451 --le~---~Qq~D~~~lG~ll~aLAt~~~n  475 (655)
T KOG3741|consen  451 --LES---QQQNDLRDLGLLLLALATGTEN  475 (655)
T ss_pred             --hhH---HhhhhHHHHHHHHHHHhhcccc
Confidence              111   1356888999999999999654

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=97.40  E-value=0.00051  Score=52.19  Aligned_cols=64  Identities=14%  Similarity=0.159  Sum_probs=49.3

Q ss_pred             eEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecce
Q 044746           55 TYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK  129 (202)
Q Consensus        55 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~  129 (202)
                      .+++++++|.++.++..   ++.    .+...+..++.-+|+   .|+.|+|..|.|++++.++ ++++||+..+
T Consensus       119 ~ll~EYIeG~~l~d~~~---i~e----~~~~ki~~~ikqlH~---~G~~HGD~hpgNFlv~~~~-i~iID~~~k~  182 (229)
T PF06176_consen  119 VLLMEYIEGVELNDIED---IDE----DLAEKIVEAIKQLHK---HGFYHGDPHPGNFLVSNNG-IRIIDTQGKR  182 (229)
T ss_pred             EEEEEEecCeecccchh---cCH----HHHHHHHHHHHHHHH---cCCccCCCCcCcEEEECCc-EEEEECcccc
Confidence            46888888877755432   222    345667788999999   9999999999999998655 8999998665

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=97.36  E-value=0.0014  Score=48.78  Aligned_cols=87  Identities=17%  Similarity=0.188  Sum_probs=66.4

Q ss_pred             cccccccccccceEEEEEccCCchhh----hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC
Q 044746           43 NFSNLVGSEDTETYIKGFLAMGPFYL----LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF  118 (202)
Q Consensus        43 ~~~~~i~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~  118 (202)
                      .+|.++|.-+. .++.++...+++.+    +.+-...+|..+.+++.+++..+++++......+.-.|++++|+.++.++
T Consensus        21 ~~pk~lG~CG~-~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~~~lcDv~~~nfgv~~~~   99 (188)
T PF12260_consen   21 PFPKLLGSCGR-FYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELDHGPLGFFYLCDVSPDNFGVNDDG   99 (188)
T ss_pred             CCCCeeeECCC-EEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecchHHeEEeCCC
Confidence            56677776544 35666766665542    22334579999999999999999999874445678889999999999999


Q ss_pred             ceEEeeeeccee
Q 044746          119 FPKAADFGLAKL  130 (202)
Q Consensus       119 ~~kl~dfgl~~~  130 (202)
                      .+|++|......
T Consensus       100 ~lk~iDld~v~~  111 (188)
T PF12260_consen  100 RLKLIDLDDVFV  111 (188)
T ss_pred             cEEEEechhcch
Confidence            999999876654

Proteins in this uncharacterised family are described as transmembrane proteins.

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=97.19  E-value=0.00058  Score=53.34  Aligned_cols=69  Identities=19%  Similarity=0.130  Sum_probs=49.5

Q ss_pred             eEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746           55 TYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus        55 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      .++|++.++-.|+..-    +..+....++..|+.-+.-.-.   .|++|+|+++=||+++.+|.+.++||-.+..
T Consensus       183 aVvMe~ieG~eL~~~r----~~~en~~~il~~il~~~~~~~~---~GiVHGDlSefNIlV~~dg~~~vIDwPQ~v~  251 (304)
T COG0478         183 AVVMEYIEGVELYRLR----LDVENPDEILDKILEEVRKAYR---RGIVHGDLSEFNILVTEDGDIVVIDWPQAVP  251 (304)
T ss_pred             eeeeehcccceeeccc----CcccCHHHHHHHHHHHHHHHHH---cCccccCCchheEEEecCCCEEEEeCccccc
Confidence            4889999987775433    1234444455555554443334   8999999999999999999999999976543

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=96.48  E-value=0.012  Score=45.43  Aligned_cols=31  Identities=19%  Similarity=0.258  Sum_probs=26.9

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..++|+|+.|.|++++.++...|+||+.+..
T Consensus       163 ~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~~  193 (244)
T cd05150         163 LVVTHGDACLPNIIVDPGKFSGFIDLGRLGV  193 (244)
T ss_pred             eEEECCCCCCccEEEeCCcEEEEEEcccccc
Confidence            4589999999999999887788999987753

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=96.40  E-value=0.0013  Score=56.93  Aligned_cols=95  Identities=21%  Similarity=0.131  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCC
Q 044746           79 QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPY  158 (202)
Q Consensus        79 ~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~  158 (202)
                      +...+.+.-.++++++|+   -.=+|+|    ||+... +..+..||+....+....   ......+++.++|||.....
T Consensus       337 ~~~~~~r~et~~l~~l~~---~~~~~~d----~~l~s~-~~~~~~~~~v~~~L~~~~---~~~t~~~~~~~~~pev~~~~  405 (829)
T KOG0576|consen  337 QFAYPLRKETRPLAELHS---SYKVHRD----NILGSE-EEVKLLDFAVPPQLTRTM---KPRTAIGTPEPLAPEVIQEN  405 (829)
T ss_pred             hhhhhhhhhccccccccc---ccccCcc----cccccc-cccccccccCCcccCccc---ccccCCCCCCCCCchhhccc
Confidence            344555666788999998   4446777    776654 667999999887665443   23445679999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHHcCCCCCc
Q 044746          159 SVTQKCDVFSFGMLLFEVVGRRRNLE  184 (202)
Q Consensus       159 ~~~~~~Diws~G~~l~el~~g~~p~~  184 (202)
                      .+....|.|+.+.--.++.-|-+|-.
T Consensus       406 ~~~~~p~~~~~~~~~~~~ap~~pPr~  431 (829)
T KOG0576|consen  406 TIDGCPDSGSLAVSAIQMAPGLPPRS  431 (829)
T ss_pred             ccccCCCccCCCcchhhcCCCCCCCC
Confidence            99999999999986677777776644

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=96.23  E-value=0.023  Score=44.08  Aligned_cols=76  Identities=16%  Similarity=0.106  Sum_probs=55.7

Q ss_pred             ceEEEEEccCCc-hhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceecc
Q 044746           54 ETYIKGFLAMGP-FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN  132 (202)
Q Consensus        54 ~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~  132 (202)
                      ..++|+|+.... -.-.++.-.+...+...+..+++..+.-|-..  .+++|+||+.=|||+. ++.+.++|+|-|....
T Consensus       141 nVLvMEfIg~~g~pAP~LkDv~~e~~e~~~~~~~~v~~~~~l~~~--a~LVHgDLSEyNiL~~-~~~p~iID~~QaV~~~  217 (268)
T COG1718         141 NVLVMEFIGDDGLPAPRLKDVPLELEEAEGLYEDVVEYMRRLYKE--AGLVHGDLSEYNILVH-DGEPYIIDVSQAVTID  217 (268)
T ss_pred             CeEEEEeccCCCCCCCCcccCCcCchhHHHHHHHHHHHHHHHHHh--cCcccccchhhheEEE-CCeEEEEECccccccC
Confidence            447888886551 11122233344456888888888888777652  7999999999999999 8899999999886544

>PRK05231 homoserine kinase; Provisional

Probab=95.21  E-value=0.048  Score=43.80  Aligned_cols=32  Identities=22%  Similarity=0.326  Sum_probs=27.4

Q ss_pred             CCCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746           99 RQKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus        99 ~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..++||+|+.|.||+++.+....++||+.+..
T Consensus       186 p~~liHgD~~~~Nil~~~~~~~~iIDf~~~~~  217 (319)
T PRK05231        186 PRGVIHADLFRDNVLFEGDRLSGFIDFYFACN  217 (319)
T ss_pred             CcccCCCCCCCCcEEEECCceEEEEecccccC
Confidence            36899999999999999776668999998753

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=95.18  E-value=0.088  Score=45.33  Aligned_cols=75  Identities=13%  Similarity=0.134  Sum_probs=51.5

Q ss_pred             ccceEEEEEccCCchhhhh--ccCCCCHHHHHHHHHHHHHHH-HHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecc
Q 044746           52 DTETYIKGFLAMGPFYLLC--KKNILGFGQLREIEVSTSKGI-AYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA  128 (202)
Q Consensus        52 ~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~i~~~l-~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~  128 (202)
                      +-..+.+++++|-++.++.  +...++.   ..++..++.+. .-+-.   .|.+|.|..|-||++..++.+.+.|||+.
T Consensus       239 ~~~VLtmE~i~Gi~i~d~~~l~~~g~d~---k~ia~~~~~~f~~q~~~---dgffHaDpHpGNi~v~~~g~i~~lDfGi~  312 (517)
T COG0661         239 TRRVLTMEWIDGIKISDIAALKSAGIDR---KELAELLVRAFLRQLLR---DGFFHADPHPGNILVRSDGRIVLLDFGIV  312 (517)
T ss_pred             CCcEEEEEeeCCEecccHHHHHhcCCCH---HHHHHHHHHHHHHHHHh---cCccccCCCccceEEecCCcEEEEcCcce
Confidence            4445788899988887774  3334443   23333333222 11111   68999999999999999999999999998


Q ss_pred             eecc
Q 044746          129 KLYN  132 (202)
Q Consensus       129 ~~~~  132 (202)
                      ..++
T Consensus       313 g~l~  316 (517)
T COG0661         313 GRLD  316 (517)
T ss_pred             ecCC
Confidence            7654

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=94.83  E-value=0.13  Score=44.37  Aligned_cols=75  Identities=13%  Similarity=0.061  Sum_probs=52.1

Q ss_pred             cceEEEEEccCCchhhh--hccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc----CCCceEEeeee
Q 044746           53 TETYIKGFLAMGPFYLL--CKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD----ENFFPKAADFG  126 (202)
Q Consensus        53 ~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~----~~~~~kl~dfg  126 (202)
                      ...+.|||++|..+.+.  +....++...+..-..++..-.-+.     .|.+|.|-.|-||++.    .++.+.+-|||
T Consensus       276 ~RVLtME~~~G~~i~Dl~~i~~~gi~~~~i~~~l~~~~~~qIf~-----~GffHaDPHPGNilv~~~~~~~~~ivllDhG  350 (538)
T KOG1235|consen  276 KRVLTMEYVDGIKINDLDAIDKRGISPHDILNKLVEAYLEQIFK-----TGFFHADPHPGNILVRPNPEGDEEIVLLDHG  350 (538)
T ss_pred             ceEEEEEecCCccCCCHHHHHHcCCCHHHHHHHHHHHHHHHHHh-----cCCccCCCCCCcEEEecCCCCCccEEEEccc
Confidence            34588999999876544  4556677665444433333222222     6899999999999998    36788999999


Q ss_pred             cceecc
Q 044746          127 LAKLYN  132 (202)
Q Consensus       127 l~~~~~  132 (202)
                      +.....
T Consensus       351 l~~~is  356 (538)
T KOG1235|consen  351 LYAVIS  356 (538)
T ss_pred             cccccc
Confidence            987654

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=94.69  E-value=0.084  Score=43.43  Aligned_cols=53  Identities=17%  Similarity=0.133  Sum_probs=44.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..+++...++.+.+.-+.-+..  ....=||++.-.||||+ .|++.|+||-++++
T Consensus       318 ~~~~e~lsff~s~~sil~~lek--kf~fehrnlt~~niLId-~GnvtLIDfklsRl  370 (488)
T COG5072         318 DRSEEELSFFWSCISILDILEK--KFPFEHRNLTLDNILID-EGNVTLIDFKLSRL  370 (488)
T ss_pred             ccHHHHHHHHHHHHHHHhhhhh--cCCcccccccccceeee-cCceEEEEeeeeec
Confidence            4577888888887776666665  36788999999999999 99999999999984

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=94.60  E-value=0.11  Score=41.26  Aligned_cols=32  Identities=22%  Similarity=0.189  Sum_probs=27.8

Q ss_pred             CCCeEEecCCCCcEEEcCC----CceEEeeeeccee
Q 044746           99 RQKIVHYDIKPESVLLDEN----FFPKAADFGLAKL  130 (202)
Q Consensus        99 ~~~iiHrdlk~~nil~~~~----~~~kl~dfgl~~~  130 (202)
                      ...++|+|+.+.||+++.+    +.+.++||..+..
T Consensus       178 ~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~  213 (302)
T cd05156         178 PVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASY  213 (302)
T ss_pred             CceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCC
Confidence            3678999999999999874    7899999998864

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PHA03111 Ser/Thr kinase; Provisional

Probab=94.56  E-value=0.046  Score=44.29  Aligned_cols=51  Identities=18%  Similarity=0.328  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHH-HhCCCCCeEEecCCCCcEEEcCCC------------------ceEEeeeeccee
Q 044746           80 LREIEVSTSKGIAYL-HEECRQKIVHYDIKPESVLLDENF------------------FPKAADFGLAKL  130 (202)
Q Consensus        80 ~~~~~~~i~~~l~~l-H~~~~~~iiHrdlk~~nil~~~~~------------------~~kl~dfgl~~~  130 (202)
                      ++.+..|++.-.-.. .-.|....+|-||||+|||+-...                  .++|.||.+++.
T Consensus       281 ikfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~~i~I~~~~~~~vF~Epi~~~LnDFDfSqv  350 (444)
T PHA03111        281 IKFIFLQIALLYIKIYELPCCDNFLHVDLKPDNILIFDSDEPISITLKDATYVFNEPIKACLNDFDFSQV  350 (444)
T ss_pred             HHHHHHHHHHHHHhhhcCCCcceeeeccCCCCcEEEecCCCcEEEEECCeEEEeccchhhhhcccCHHHH
Confidence            555667776544223 222236789999999999993322                  346677777764

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=94.50  E-value=0.039  Score=42.35  Aligned_cols=31  Identities=23%  Similarity=0.423  Sum_probs=26.2

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..++|+|+.+.|++++......++||+.+..
T Consensus       164 ~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~~  194 (235)
T cd05155         164 PVWFHGDLAPGNLLVQDGRLSAVIDFGCLGV  194 (235)
T ss_pred             ceEEeCCCCCCcEEEECCCEEEEEeCcccCc
Confidence            5589999999999998776667999997753

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=94.49  E-value=0.0048  Score=58.70  Aligned_cols=103  Identities=12%  Similarity=-0.016  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHhCC--CCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCC
Q 044746           80 LREIEVSTSKGIAYLHEEC--RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMP  157 (202)
Q Consensus        80 ~~~~~~~i~~~l~~lH~~~--~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~  157 (202)
                      +.....+...+..-+|+..  ..-.+|++||+-|.+|..+..+++.++|+.+...+..  .......+++.|+.|+....
T Consensus      1337 v~~~~kvsvl~~~~~ls~tnlg~T~v~~~Lkf~lpmIVtny~v~~gk~gLdKIknp~~--sf~Gl~l~sp~~v~qli~N~ 1414 (2724)
T KOG1826|consen 1337 VHLRHKVSVLNRNVILSLTNLGNTNVSKSLKFTLPMIVTNYNVKLGKGGLDKIKNPVL--SFFGLELCSPIYVLQLIKNE 1414 (2724)
T ss_pred             HHHHHHHHHhccchhhhcccCCccchhhhhhhhccceecCCcccccccccccccCchH--hhhhhhhCCHHHHHHHHHHH
Confidence            3333334344444444321  2345899999999999999999999999998433222  12233456778889988887


Q ss_pred             CCCCchhhHHHHHHHHHHHHcCCCCCc
Q 044746          158 YSVTQKCDVFSFGMLLFEVVGRRRNLE  184 (202)
Q Consensus       158 ~~~~~~~Diws~G~~l~el~~g~~p~~  184 (202)
                      -.++.++|+|+.|+-+++...|.++|-
T Consensus      1415 ik~t~rsdilr~s~~ly~rs~~n~~fi 1441 (2724)
T KOG1826|consen 1415 IKFTKRSDILRRSLSLYLRSDGNAYFI 1441 (2724)
T ss_pred             HhhhhHHHHHHHHHHHHHHhcccHHHH
Confidence            788888999999999999888887763

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=94.26  E-value=0.082  Score=40.35  Aligned_cols=30  Identities=20%  Similarity=0.258  Sum_probs=26.2

Q ss_pred             CCeEEecCCCCcEEEcC-CCceEEeeeecce
Q 044746          100 QKIVHYDIKPESVLLDE-NFFPKAADFGLAK  129 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~-~~~~kl~dfgl~~  129 (202)
                      ..++|+|+.+.||+++. ++.+.++||..|.
T Consensus       170 ~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~  200 (235)
T cd05157         170 IVFCHNDLLSGNIIYNEEKNSVKFIDYEYAG  200 (235)
T ss_pred             EEEEcCCCCcCcEEEeCCCCCEEEEEcccCC
Confidence            46899999999999997 5789999997664

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=94.23  E-value=0.13  Score=41.19  Aligned_cols=32  Identities=28%  Similarity=0.452  Sum_probs=28.1

Q ss_pred             CCCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746           99 RQKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus        99 ~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..+++|+|+.+.|++++.++...++||+.+..
T Consensus       186 ~~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~~  217 (307)
T TIGR00938       186 PRGVIHADLFPDNVLFDGDSVKGVIDFYFACT  217 (307)
T ss_pred             CCccCCCCCCcCcEEEECCceEEEeecccccC
Confidence            47899999999999999888778999998753

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=94.21  E-value=0.05  Score=41.74  Aligned_cols=39  Identities=26%  Similarity=0.304  Sum_probs=33.3

Q ss_pred             HHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeec
Q 044746           88 SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL  127 (202)
Q Consensus        88 ~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl  127 (202)
                      +++|.-.|++. .+.+|+|..|+||+-+..|.+||.|=+.
T Consensus       151 i~~L~~fH~~~-~~~lHGD~np~NiM~D~~G~lKlVDP~~  189 (308)
T PF07387_consen  151 IKDLMDFHSEN-QHCLHGDCNPDNIMCDKFGYLKLVDPVC  189 (308)
T ss_pred             HHHHHHhhccC-CCeecCCCChhheeecCCCCEEecChhh
Confidence            46788888643 7899999999999999999999999653

The function of this family is unknown.

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=93.87  E-value=0.27  Score=45.99  Aligned_cols=106  Identities=17%  Similarity=0.216  Sum_probs=68.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCC---cEEEcCCCceEEe--eeecceeccccCcccccCCCCC
Q 044746           71 KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPE---SVLLDENFFPKAA--DFGLAKLYNREHTHITSTGRRR  145 (202)
Q Consensus        71 ~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~---nil~~~~~~~kl~--dfgl~~~~~~~~~~~~~~~~~g  145 (202)
                      ....++....+.+..++.+|+.|+|+   ...-|.-+...   +-..+..+....+  ||+.++..........   ...
T Consensus       279 ~v~~i~~~~~r~~~~~~~~GL~~~h~---~~l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~~~~~---~~~  352 (1351)
T KOG1035|consen  279 SVGSIPLETLRILHQKLLEGLAYLHS---LSLEHVVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDNEKSFS---DLL  352 (1351)
T ss_pred             hccccCHHHHHHHHHHHhhhHHHHHH---hccceeEEecccccccccCccceeecchhhhcccccCCCcccchh---hcC
Confidence            44568899999999999999999998   55545444433   2223344555555  7877765443322111   122


Q ss_pred             CCcccCCcccCCCCCCc--hhhHHHHHHHHHHHHcCCCC
Q 044746          146 TPGCEAPELWMPYSVTQ--KCDVFSFGMLLFEVVGRRRN  182 (202)
Q Consensus       146 t~~y~aPe~~~~~~~~~--~~Diws~G~~l~el~~g~~p  182 (202)
                      +..+.+||.......+.  ..|+|.+|.....+..|..+
T Consensus       353 ~~~~~~~e~~~~~~~~~~r~~dL~~lgll~~~~~~~~~i  391 (1351)
T KOG1035|consen  353 AEIRNADEDLKENTAKKSRLTDLWCLGLLLLQLSQGEDI  391 (1351)
T ss_pred             ccccccccccccccchhhhhhHHHHHHHHHhhhhhcCcc
Confidence            45567777766554443  36999999999988877654

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=93.66  E-value=0.042  Score=41.42  Aligned_cols=31  Identities=26%  Similarity=0.341  Sum_probs=21.6

Q ss_pred             CCeEEecCCCCcEEEc-CCCceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLD-ENFFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~-~~~~~kl~dfgl~~~  130 (202)
                      ..++|+|+.|.||+++ .++.+.++||+.+..
T Consensus       166 ~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~  197 (239)
T PF01636_consen  166 PVLIHGDLHPGNILVDPSDGRIGIIDFEDAGW  197 (239)
T ss_dssp             EEEE-SS-SGGGEEEESSTTEEEE--GTT-EE
T ss_pred             cEEEEeccccccceeeeccceeEEEecccceE
Confidence            6799999999999999 666668999987643

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=93.63  E-value=0.05  Score=43.14  Aligned_cols=31  Identities=26%  Similarity=0.404  Sum_probs=27.4

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      .+++|+|+.|.|++++.++.+.++||+.+..
T Consensus       175 ~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~~  205 (296)
T cd05153         175 RGVIHADLFRDNVLFDGDELSGVIDFYFACT  205 (296)
T ss_pred             CcCCccCcCcccEEEeCCceEEEeehhhhcC
Confidence            5799999999999999887788999987754

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=93.60  E-value=0.19  Score=40.02  Aligned_cols=29  Identities=21%  Similarity=0.261  Sum_probs=25.5

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeecce
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAK  129 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~  129 (202)
                      .+++|+|+.+.|++++. +.+.++||+.+.
T Consensus       187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~~  215 (313)
T TIGR02906       187 RGFCHQDYAYHNILLKD-NEVYVIDFDYCT  215 (313)
T ss_pred             CceEcCCCCcccEEEeC-CcEEEEECcccc
Confidence            68899999999999987 568899998664

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=93.02  E-value=0.1  Score=40.00  Aligned_cols=29  Identities=14%  Similarity=0.069  Sum_probs=25.6

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeecce
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAK  129 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~  129 (202)
                      ..++|+|+.|.|++++..+ +.++||+.+.
T Consensus       153 ~~~~HgD~~~~Nii~~~~~-~~iIDwe~a~  181 (226)
T TIGR02172       153 STCLHGDFQIGNLITSGKG-TYWIDLGDFG  181 (226)
T ss_pred             CceEecCCCCCcEEEcCCC-cEEEechhcC
Confidence            4678999999999999887 8999998775

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PF05445 Pox_ser-thr_kin: Poxvirus serine/threonine protein kinase; InterPro: IPR008790 This family of proteins contain poxvirus serine/threonine protein kinases, which are essential for phosphorylation of virion proteins during virion assembly

Probab=92.94  E-value=0.067  Score=43.57  Aligned_cols=32  Identities=22%  Similarity=0.459  Sum_probs=24.0

Q ss_pred             CCeEEecCCCCcEEEcC------------------CCceEEeeeecceec
Q 044746          100 QKIVHYDIKPESVLLDE------------------NFFPKAADFGLAKLY  131 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~------------------~~~~kl~dfgl~~~~  131 (202)
                      ...+|-||||+|||+-.                  ...++|.||.+|+..
T Consensus       298 ~nF~H~DLKPdNILiFds~~~i~I~~~~~~~vF~Epi~~~LnDFDfSqv~  347 (434)
T PF05445_consen  298 TNFLHVDLKPDNILIFDSKEPIRIKFGNRNYVFKEPIRCCLNDFDFSQVA  347 (434)
T ss_pred             ceeeecccCcCcEEEecCCCceEEEECCeEEEecccceeeecccCHHHhc
Confidence            67899999999999932                  224577788877643

; GO: 0004672 protein kinase activity, 0005524 ATP binding

>TIGR02721 ycfN_thiK thiamine kinase

Probab=92.89  E-value=0.093  Score=40.78  Aligned_cols=30  Identities=17%  Similarity=0.171  Sum_probs=26.0

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..++|+|+.|.||+++.++ +.++||..+..
T Consensus       146 ~~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~~  175 (256)
T TIGR02721       146 LAPLHMDVHAYNLVVTPQG-LKLIDWEYASD  175 (256)
T ss_pred             CeeecCCCCcCcEEEeCCC-CEEEeccccCc
Confidence            3589999999999999877 78999988764

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PRK10271 thiK thiamine kinase; Provisional

Probab=92.75  E-value=0.098  Score=38.88  Aligned_cols=30  Identities=13%  Similarity=0.145  Sum_probs=25.5

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      .-.+|+|+.|.|++++.++ ++++|++.+..
T Consensus        77 ~~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~  106 (188)
T PRK10271         77 LAPLHMDVHAGNLVHSASG-LRLIDWEYAGD  106 (188)
T ss_pred             eeeecCCCCCccEEEECCC-EEEEeCCcccC
Confidence            3558999999999998777 88999998764

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=92.13  E-value=0.096  Score=39.45  Aligned_cols=31  Identities=26%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             CCeEEecCCCCcEEE-cCCCceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLL-DENFFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~-~~~~~~kl~dfgl~~~  130 (202)
                      .-++|+|+.+.||++ ..++.++++||..|..
T Consensus       143 ~v~cHnDl~~~Nil~~~~~~~~~lIDfEya~~  174 (211)
T PF01633_consen  143 LVFCHNDLNPGNILINNKDGEVKLIDFEYAGY  174 (211)
T ss_dssp             EEEE-S--SGGGEEETSSSSCEEE--GTT-EE
T ss_pred             ceEeeccCccccEEeccCCCeEEEecHHHHhh
Confidence            457899999999999 7889999999987753

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=92.02  E-value=0.31  Score=39.03  Aligned_cols=32  Identities=25%  Similarity=0.218  Sum_probs=28.2

Q ss_pred             CCCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746           99 RQKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus        99 ~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..+++|+|+.++|++++.++.+.++||..+..
T Consensus       195 ~~~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~~  226 (309)
T TIGR02904       195 RTVLVHGKLSLSHFLYDETRGGYFINFEKASF  226 (309)
T ss_pred             ceeeeCCCCcHHhEEEcCCCCEEEEEhhhccc
Confidence            36899999999999999988899999987754

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=92.01  E-value=0.47  Score=38.57  Aligned_cols=28  Identities=36%  Similarity=0.603  Sum_probs=25.1

Q ss_pred             eEEecCCCCcEEEcCCC-ceEEeeeecce
Q 044746          102 IVHYDIKPESVLLDENF-FPKAADFGLAK  129 (202)
Q Consensus       102 iiHrdlk~~nil~~~~~-~~kl~dfgl~~  129 (202)
                      +||.|+.|.||+++.+. .+.++||+-+.
T Consensus       199 iIH~D~~~~NVl~d~~~~~~g~iDFdDa~  227 (331)
T COG2334         199 IIHGDLHPDNVLFDDDTDVSGFIDFDDAG  227 (331)
T ss_pred             eeecCCCccceeEcCCCCeeeEEEccccc
Confidence            99999999999999887 48899999775

>PRK06148 hypothetical protein; Provisional

Probab=91.88  E-value=0.4  Score=44.90  Aligned_cols=32  Identities=25%  Similarity=0.303  Sum_probs=26.3

Q ss_pred             CCCeEEecCCCCcEEEcCCC--ce-EEeeeeccee
Q 044746           99 RQKIVHYDIKPESVLLDENF--FP-KAADFGLAKL  130 (202)
Q Consensus        99 ~~~iiHrdlk~~nil~~~~~--~~-kl~dfgl~~~  130 (202)
                      ..++||.|+.+.||+++.+.  .+ -++|||-+..
T Consensus       202 p~~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~~  236 (1013)
T PRK06148        202 PAQVIHNDANDYNILVDADDGERISGLIDFGDAVH  236 (1013)
T ss_pred             CcceECCCCCcccEEEcCCCCcceEEEEECccccc
Confidence            46899999999999998774  44 4999997753

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=91.78  E-value=0.39  Score=37.89  Aligned_cols=30  Identities=27%  Similarity=0.273  Sum_probs=26.9

Q ss_pred             CeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746          101 KIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus       101 ~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      -++|.|+.|.|++.+..+.+.|+||.-|..
T Consensus       154 v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg~  183 (269)
T COG0510         154 VPCHNDLNPGNLLLTDKGGLFLIDWEYAGL  183 (269)
T ss_pred             eeecCCCCccceEEcCCCcEEEEecccCCC
Confidence            489999999999999989999999987753

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=91.53  E-value=0.2  Score=37.43  Aligned_cols=31  Identities=16%  Similarity=0.204  Sum_probs=25.5

Q ss_pred             CCeEEecCCCCcEEEcCCC-----ceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDENF-----FPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~-----~~kl~dfgl~~~  130 (202)
                      ..++|+|+.+.|+++..++     .+.++||..+..
T Consensus       120 ~vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~~  155 (196)
T smart00587      120 NVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHY  155 (196)
T ss_pred             eEEeeCCCCccceeeccCCCCCccceEEEecccCCc
Confidence            5789999999999997543     588999987753

subfamily of choline kinases

>PLN02236 choline kinase

Probab=91.38  E-value=0.4  Score=39.20  Aligned_cols=31  Identities=19%  Similarity=0.303  Sum_probs=26.8

Q ss_pred             CCeEEecCCCCcEEEcC-CCceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDE-NFFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~-~~~~kl~dfgl~~~  130 (202)
                      ..++|+|+++.||+++. ++.+.++||..+..
T Consensus       200 ~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~~  231 (344)
T PLN02236        200 IGFCHNDLQYGNIMIDEETRAITIIDYEYASY  231 (344)
T ss_pred             ceEEeCCCCcCcEEEeCCCCcEEEEeehhccc
Confidence            46899999999999976 47899999988864

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=90.90  E-value=0.91  Score=34.11  Aligned_cols=53  Identities=21%  Similarity=0.185  Sum_probs=36.9

Q ss_pred             chhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC--C--ceEEee
Q 044746           65 PFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN--F--FPKAAD  124 (202)
Q Consensus        65 ~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~--~--~~kl~d  124 (202)
                      +|..++..+.++. ......   -.-.+||-+   ..|+.+|++|.||++...  +  .+.++|
T Consensus       109 TL~~~l~~~~~~~-~~~~~L---~~f~~~l~~---~~Iv~~dl~~~NIv~~~~~~~~~~lvlID  165 (199)
T PF10707_consen  109 TLEDYLKEGGLTE-ELRQAL---DEFKRYLLD---HHIVIRDLNPHNIVVQRRDSGEFRLVLID  165 (199)
T ss_pred             cHHHHHHcCCccH-HHHHHH---HHHHHHHHH---cCCeecCCCcccEEEEecCCCceEEEEEe
Confidence            6788887777766 333333   334466676   899999999999999632  2  466776

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=90.88  E-value=0.21  Score=39.55  Aligned_cols=31  Identities=32%  Similarity=0.484  Sum_probs=25.6

Q ss_pred             CCeEEecCCCCcEEEcCCCc-eEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDENFF-PKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~-~kl~dfgl~~~  130 (202)
                      ..++|+|+.|.|++++.++. .-++||+.+..
T Consensus       185 ~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~i  216 (276)
T cd05152         185 TVLVHGDLHPGHILIDEDARVTGLIDWTEAKV  216 (276)
T ss_pred             CeeEeCCCCCCcEEEeCCCCEEEEECcHhccc
Confidence            45899999999999987454 56999998764

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=90.16  E-value=0.32  Score=39.68  Aligned_cols=67  Identities=10%  Similarity=0.027  Sum_probs=43.0

Q ss_pred             eEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecce
Q 044746           55 TYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK  129 (202)
Q Consensus        55 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~  129 (202)
                      .+++++..+-+|.+.-+-..  ..   .+...+..-+--|-.   +|+||+|.+-=||+++.++.++++||--..
T Consensus       184 ~Vvmelv~g~Pl~~v~~v~d--~~---~ly~~lm~~Iv~la~---~GlIHgDFNEFNimv~dd~~i~vIDFPQmv  250 (465)
T KOG2268|consen  184 CVVMELVDGYPLRQVRHVED--PP---TLYDDLMGLIVRLAN---HGLIHGDFNEFNIMVKDDDKIVVIDFPQMV  250 (465)
T ss_pred             eeHHHhhcccceeeeeecCC--hH---HHHHHHHHHHHHHHH---cCceecccchheeEEecCCCEEEeechHhh
Confidence            36777777777755442221  11   122222222223333   899999999999999999999999996443

>PRK06149 hypothetical protein; Provisional

Probab=89.58  E-value=0.63  Score=43.44  Aligned_cols=31  Identities=26%  Similarity=0.288  Sum_probs=25.4

Q ss_pred             CCCeEEecCCCCcEEEcCCC--c---eEEeeeecce
Q 044746           99 RQKIVHYDIKPESVLLDENF--F---PKAADFGLAK  129 (202)
Q Consensus        99 ~~~iiHrdlk~~nil~~~~~--~---~kl~dfgl~~  129 (202)
                      ..++||.|+.+.||+++.+.  .   ..++|||-+.
T Consensus       207 ~~g~IH~Dl~~~Nilv~~~~~~~~~v~giIDFgD~~  242 (972)
T PRK06149        207 PLQAVHLDITDDNVVGSRDADGRWQPDGVIDFGDLV  242 (972)
T ss_pred             cccccCCCCCcccEEEcCCCCCCcceeEEEEcccch
Confidence            47899999999999998652  2   4799999765

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=89.42  E-value=0.39  Score=38.81  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=28.7

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeecceec
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAKLY  131 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~  131 (202)
                      ..++|+|+.+.|++++..+-+-+.||+++..-
T Consensus       198 ~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lG  229 (321)
T COG3173         198 PVLVHGDYRPGNLIIDPGRPTGVLDWELATLG  229 (321)
T ss_pred             ceeeeCCcccCCEEEeCCCeeEEEeccccccC
Confidence            57899999999999998888999999998753

>PRK11768 serine/threonine protein kinase; Provisional

Probab=88.01  E-value=1.2  Score=36.00  Aligned_cols=30  Identities=27%  Similarity=0.380  Sum_probs=24.9

Q ss_pred             CCCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746           99 RQKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus        99 ~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..++||+|+.+.||+++ + .+.++||+-+..
T Consensus       195 ~~~liHgD~h~~NvL~~-d-~~~iIDFDd~~~  224 (325)
T PRK11768        195 RLLRLHGDCHPGNILWR-D-GPHFVDLDDARM  224 (325)
T ss_pred             CccceecCCCchhcccc-C-CcEEEeCCCCCC
Confidence            36789999999999995 4 578999997753

>COG4499 Predicted membrane protein [Function unknown]

Probab=87.65  E-value=2.5  Score=34.78  Aligned_cols=105  Identities=10%  Similarity=0.132  Sum_probs=67.4

Q ss_pred             EEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccC
Q 044746           56 YIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH  135 (202)
Q Consensus        56 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~  135 (202)
                      ++..+-...+...+-.-..+......+++.+.+..|.-+-    +.-.|-=|.|+||+++.+..+.+..+|+-..+.   
T Consensus        63 ~vIsy~i~~~~~~F~~~k~~~k~~Klr~a~~~I~~l~e~~----~tr~~~~laPeNilf~~~l~p~~vH~Glk~~lp---  135 (434)
T COG4499          63 FVISYPIPEAAKSFASAKRKEKTRKLRLALQNIATLSELN----NTRYTFFLAPENILFDGGLTPFFVHRGLKNSLP---  135 (434)
T ss_pred             eEEEecCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccceeEEecchheEEcCCCceEEEecchhccCC---
Confidence            4444444444444444445566666776777777776544    345566788999999999999999999764321   


Q ss_pred             cccccCCCCCCCcccCCcccCCCCCCchhhHH-HHHHHHHHHHcCCCCCcchhcc
Q 044746          136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVF-SFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       136 ~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diw-s~G~~l~el~~g~~p~~~~~~~  189 (202)
                                 |.=+.           ..+.| ++-+++..++.|+.+|+.--..
T Consensus       136 -----------Pye~t-----------ee~f~~~ykA~~~~~fn~k~~Fe~l~~g  168 (434)
T COG4499         136 -----------PYEMT-----------EERFLKEYKALAIYAFNGKFSFESLVNG  168 (434)
T ss_pred             -----------CCCCC-----------HHHHHHHHHHHHHHHHcCCccHHHHhcc
Confidence                       11122           23444 5677778888899888765543

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=87.39  E-value=0.56  Score=38.05  Aligned_cols=30  Identities=20%  Similarity=0.232  Sum_probs=25.6

Q ss_pred             CeEEecCCCCcEEEcC-CCceEEeeeeccee
Q 044746          101 KIVHYDIKPESVLLDE-NFFPKAADFGLAKL  130 (202)
Q Consensus       101 ~iiHrdlk~~nil~~~-~~~~kl~dfgl~~~  130 (202)
                      -.+|.|+.+.||+++. ++.++++||..|..
T Consensus       183 v~CHnDl~~~NiL~~~~~~~l~lID~EYag~  213 (330)
T PLN02421        183 VFAHNDLLSGNLMLNEDEGKLYFIDFEYGSY  213 (330)
T ss_pred             EEEECCCCcccEEEeCCCCcEEEEcccccCC
Confidence            3699999999999974 57899999988764

>PTZ00384 choline kinase; Provisional

Probab=84.83  E-value=3.2  Score=34.58  Aligned_cols=30  Identities=20%  Similarity=0.049  Sum_probs=24.4

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ...+|.|+-+.||+.+. ..+.++||.-|..
T Consensus       227 ~VfCHNDL~~gNIL~~~-~~l~lID~EYA~~  256 (383)
T PTZ00384        227 VLFCHNDLFFTNILDFN-QGIYFIDFDFAGF  256 (383)
T ss_pred             eeeeeccCCcccEEecC-CCEEEEEeccccC
Confidence            45699999999998764 4589999987753

>PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function

Probab=83.90  E-value=0.6  Score=36.94  Aligned_cols=31  Identities=23%  Similarity=0.234  Sum_probs=25.0

Q ss_pred             CCeEEecCCCCcEEEcCC--C---ceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDEN--F---FPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~--~---~~kl~dfgl~~~  130 (202)
                      .-++|+|+.+.||++..+  |   .+++.||.+++.
T Consensus       215 ~vl~HGD~w~nNilf~~~~~g~~~~~~liDfQ~~~~  250 (294)
T PF02958_consen  215 NVLCHGDFWTNNILFKYDDDGKPIDVVLIDFQLARY  250 (294)
T ss_pred             eEEEcCccCHHhEeEccccccccccceeeccccccC
Confidence            567999999999999654  3   588999987653

All known members of this group are proteins from drosophila and Caenorhabditis elegans.

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=83.69  E-value=2.5  Score=35.35  Aligned_cols=29  Identities=24%  Similarity=0.332  Sum_probs=25.0

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeecce
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAK  129 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~  129 (202)
                      ..++|+|+.+.||++..+ .++++|+..+.
T Consensus       223 ~~l~HgDl~~gni~~~~~-~~~viD~E~a~  251 (401)
T PRK09550        223 EALLHGDLHTGSIFVTEE-ETKVIDPEFAF  251 (401)
T ss_pred             CceeeccCCcccEEeeCC-CcEEEeccccc
Confidence            679999999999999765 58999998665

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=82.67  E-value=2.4  Score=32.08  Aligned_cols=41  Identities=24%  Similarity=0.214  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecc
Q 044746           80 LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA  128 (202)
Q Consensus        80 ~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~  128 (202)
                      ...-+.++.+-+..+|.   .+|+-+|+++.|..     .-+|+|||.+
T Consensus       166 ~~~~~~~~~~dl~~~~k---~gI~~~Dv~~~ny~-----~G~lvDfs~~  206 (207)
T PF13095_consen  166 QIRDIPQMLRDLKILHK---LGIVPRDVKPRNYR-----GGKLVDFSSS  206 (207)
T ss_pred             chhHHHHHHHHHHHHHH---CCeeeccCcccccc-----CCEEEecccC
Confidence            33445677778889998   99999999999986     3489999853

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=82.60  E-value=1.9  Score=36.40  Aligned_cols=58  Identities=12%  Similarity=0.137  Sum_probs=44.6

Q ss_pred             EEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc
Q 044746           56 YIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD  115 (202)
Q Consensus        56 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~  115 (202)
                      ++..+..+-++..+++....+++...+++.-...|+.-|--.  -+.+|.|+.|.||++.
T Consensus       322 l~E~~~~Gl~v~~~v~~~~~pe~l~kkva~lg~~AllkMl~v--DNFvHaDlHPGNVlir  379 (565)
T KOG1236|consen  322 LVETYERGLSVLRFVKWKSQPEALVKKVAKLGVNALLKMLIV--DNFVHADLHPGNVLIR  379 (565)
T ss_pred             eeeeccccccHHhhhhcccChHHHHHHHHHHHHHHHHHHHHh--hcceecccCCCcEEEE
Confidence            444556666788888777777777888888778887655542  6899999999999995

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		5e-16
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		1e-15
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		2e-14
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		4e-14
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		1e-10
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		4e-10
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		4e-10
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		4e-10
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		4e-10
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		4e-10
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		4e-10
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		4e-10
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		4e-10
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		4e-10
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		6e-10
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		6e-10
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		6e-10
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		1e-09
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-09
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-09
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		3e-09
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		3e-09
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		3e-09
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		3e-09
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		3e-09
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		4e-09
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		4e-09
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		5e-09
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		5e-09
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		5e-09
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		6e-09
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		6e-09
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		7e-09
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		7e-09
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		7e-09
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		7e-09
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		7e-09
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		7e-09
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		7e-09
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		7e-09
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		7e-09
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		7e-09
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		7e-09
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		7e-09
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		8e-09
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		8e-09
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		8e-09
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		1e-08
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		1e-08
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		1e-08
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		1e-08
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		1e-08
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		1e-08
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		2e-08
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		2e-08
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		2e-08
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		2e-08
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		2e-08
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		2e-08
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		2e-08
2q0b_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-08
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-08
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-08
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		2e-08
2py3_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-08
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-08
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		2e-08
3b2t_A	311	Structure Of Phosphotransferase Length = 311		2e-08
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		2e-08
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		2e-08
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		3e-08
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		3e-08
2pzr_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		4e-08
3a4o_X	286	Lyn Kinase Domain Length = 286		5e-08
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		5e-08
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		7e-08
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		7e-08
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		7e-08
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		7e-08
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		8e-08
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		8e-08
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		1e-07
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-07
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		1e-07
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-07
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		2e-07
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		2e-07
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		2e-07
2qlu_A	314	Crystal Structure Of Activin Receptor Type Ii Kinas		2e-07
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		3e-07
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		3e-07
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		3e-07
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		3e-07
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		3e-07
3nr9_A	368	Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length		3e-07
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		3e-07
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		3e-07
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		3e-07
3aln_A	327	Crystal Structure Of Human Non-Phosphorylated Mkk4		3e-07
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		3e-07
2pl0_A	289	Lck Bound To Imatinib Length = 289		3e-07
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		3e-07
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		4e-07
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		4e-07
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		4e-07
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		4e-07
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		4e-07
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		4e-07
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		4e-07
4h58_A	275	Braf In Complex With Compound 3 Length = 275		4e-07
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		4e-07
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		4e-07
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		4e-07
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		4e-07
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		4e-07
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		4e-07
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		4e-07
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		5e-07
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		5e-07
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		5e-07
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		5e-07
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		5e-07
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		6e-07
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		6e-07
1fvr_A	327	Tie2 Kinase Domain Length = 327		6e-07
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		6e-07
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		6e-07
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		6e-07
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		6e-07
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		6e-07
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		6e-07
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		6e-07
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		6e-07
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		7e-07
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		7e-07
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		7e-07
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		7e-07
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		7e-07
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		7e-07
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		7e-07
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		8e-07
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		8e-07
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		8e-07
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		8e-07
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		8e-07
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		8e-07
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		8e-07
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		9e-07
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		9e-07
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		9e-07
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		9e-07
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		9e-07
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		9e-07
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		9e-07
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		9e-07
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		9e-07
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		9e-07
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		9e-07
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		9e-07
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		9e-07
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		1e-06
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		1e-06
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		1e-06
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		1e-06
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		1e-06
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		1e-06
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		1e-06
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		1e-06
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		1e-06
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		1e-06
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		1e-06
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		1e-06
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		1e-06
3a7f_A	303	Human Mst3 Kinase Length = 303		1e-06
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		1e-06
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		1e-06
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		1e-06
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		1e-06
4f4p_A	273	Syk In Complex With Ligand Lasw836 Length = 273		1e-06
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		1e-06
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		1e-06
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		1e-06
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		1e-06
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		1e-06
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		1e-06
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		1e-06
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		1e-06
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		1e-06
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		1e-06
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		1e-06
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		1e-06
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		1e-06
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		1e-06
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		1e-06
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		1e-06
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		1e-06
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		1e-06
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		1e-06
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		1e-06
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		1e-06
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		1e-06
4dfl_A	274	Crystal Structure Of Spleen Tyrosine Kinase Complex		1e-06
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		1e-06
3srv_B	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		1e-06
2oza_B	366	Structure Of P38alpha Complex Length = 366		1e-06
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		1e-06
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		1e-06
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		1e-06
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		1e-06
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		1e-06
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		1e-06
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		1e-06
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		1e-06
1xba_A	291	Crystal Structure Of Apo Syk Tyrosine Kinase Domain		1e-06
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		1e-06
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		1e-06
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		1e-06
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		1e-06
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		1e-06
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		1e-06
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		1e-06
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		1e-06
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		1e-06
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		1e-06
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		1e-06
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		1e-06
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		1e-06
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		1e-06
2fso_X	367	Mitogen Activated Protein Kinase P38alpha (D176a) A		1e-06
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		1e-06
3emg_A	291	Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylami		1e-06
3tub_A	293	Crystal Structure Of Syk Kinase Domain With 1-(5-(6		1e-06
3vf8_A	299	Crystal Structure Of Spleen Tyrosine Kinase Syk Cat		1e-06
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		1e-06
3hec_A	348	P38 In Complex With Imatinib Length = 348		1e-06
2onl_C	406	Crystal Structure Of The P38a-Mapkap Kinase 2 Heter		1e-06
1kwp_A	400	Crystal Structure Of Mapkap2 Length = 400		1e-06
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		2e-06
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		2e-06
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-06
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		2e-06
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		2e-06
2jbo_A	326	Protein Kinase Mk2 In Complex With An Inhibitor (Cr		2e-06
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		2e-06
2p3g_X	327	Crystal Structure Of A Pyrrolopyridine Inhibitor Bo		2e-06
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		2e-06
3r2y_A	319	Mk2 Kinase Bound To Compound 1 Length = 319		2e-06
3r2b_A	318	Mk2 Kinase Bound To Compound 5b Length = 318		2e-06
3gok_A	334	Binding Site Mapping Of Protein Ligands Length = 33		2e-06
2oza_A	356	Structure Of P38alpha Complex Length = 356		2e-06
3fpm_A	325	Crystal Structure Of A Squarate Inhibitor Bound To		2e-06
3srv_A	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		2e-06
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		2e-06
2zoq_A	382	Structural Dissection Of Human Mitogen-Activated Ki		2e-06
2pzy_A	324	Structure Of Mk2 Complexed With Compound 76 Length		2e-06
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		2e-06
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		2e-06
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		2e-06
3tei_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		2e-06
1pme_A	380	Structure Of Penta Mutant Human Erk2 Map Kinase Com		2e-06
4fl2_A	636	Structural And Biophysical Characterization Of The		2e-06
3ka0_A	320	Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4		2e-06
4fl3_A	635	Structural And Biophysical Characterization Of The		2e-06
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		2e-06
4h3q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		2e-06
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		2e-06
3mh2_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		2e-06
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		2e-06
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		2e-06
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		2e-06
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		3e-06
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		3e-06
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-06
4fux_A	360	Crystal Structure Of The Erk2 Complexed With E75 Le		3e-06
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		3e-06
4fv7_A	360	Crystal Structure Of The Erk2 Complexed With E94 Le		3e-06
1cm8_A	367	Phosphorylated Map Kinase P38-Gamma Length = 367		3e-06
3cjf_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		3e-06
3qyw_A	364	Crystal Structure Of Erk2 In Complex With An Inhibi		3e-06
4gsb_A	364	Monoclinic Crystal Form Of The Apo-Erk2 Length = 36		3e-06
1wzy_A	368	Crystal Structure Of Human Erk2 Complexed With A Py		3e-06
1tvo_A	368	The Structure Of Erk2 In Complex With A Small Molec		3e-06
3sa0_A	360	Complex Of Erk2 With Norathyriol Length = 360		3e-06
1gol_A	364	Coordinates Of Rat Map Kinase Erk2 With An Arginine		3e-06
2y9q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		3e-06
3zu7_A	365	Crystal Structure Of A Designed Selected Ankyrin Re		4e-06
2z7l_A	366	Unphosphorylated Mitogen Activated Protein Kinase E		4e-06
3c9w_A	357	Crystal Structure Of Erk-2 With Hypothemycin Covale		4e-06
2fys_B	364	Crystal Structure Of Erk2 Complex With Kim Peptide		4e-06
3r63_A	358	Structure Of Erk2 (Spe) Mutant (S246e) Length = 358		4e-06
3o71_A	358	Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length		4e-06
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		4e-06
4fv6_A	360	Crystal Structure Of The Erk2 Complexed With E57 Le		4e-06
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		4e-06
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		4e-06
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		4e-06
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		4e-06
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		4e-06
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		4e-06
3gcp_A	360	Human P38 Map Kinase In Complex With Sb203580 Lengt		4e-06
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		4e-06
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		4e-06
2ojg_A	380	Crystal Structure Of Erk2 In Complex With N,n-dimet		4e-06
1nxk_A	400	Crystal Structure Of Staurosporine Bound To Map Kap		5e-06
3py3_A	380	Crystal Structure Of Phosphorylated P38alpha Map Ki		5e-06
3mtf_A	301	Crystal Structure Of The Acvr1 Kinase In Complex Wi		5e-06
4dym_A	301	Crystal Structure Of The Acvr1 Kinase Domain In Com		5e-06
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		5e-06
3c7q_A	316	Structure Of Vegfr2 Kinase Domain In Complex With B		5e-06
3vid_A	356	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		6e-06
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		6e-06
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		6e-06
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		6e-06
3vhe_A	359	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		6e-06
2gph_A	364	Docking Motif Interactions In The Map Kinase Erk2 L		6e-06
1y6a_A	366	Crystal Structure Of Vegfr2 In Complex With A 2-Ani		6e-06
3h9r_A	330	Crystal Structure Of The Kinase Domain Of Type I Ac		6e-06
3vhk_A	368	Crystal Structure Of The Vegfr2 Kinase Domain In Co		6e-06
3vnt_A	318	Crystal Structure Of The Kinase Domain Of Human Veg		6e-06
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		7e-06
3ewh_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		7e-06
1z57_A	339	Crystal Structure Of Human Clk1 In Complex With 10z		7e-06
3u6j_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		7e-06
4agc_A	353	Crystal Structure Of Vegfr2 (Juxtamembrane And Kina		7e-06
2xir_A	316	Crystal Structure Of The Vegfr2 Kinase Domain In Co		7e-06
3cjg_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		7e-06
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		7e-06
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		7e-06
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		7e-06
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		7e-06
3lco_A	324	Inhibitor Bound To A Dfg-Out Structure Of The Kinas		8e-06
3zuv_A	364	Crystal Structure Of A Designed Selected Ankyrin Re		8e-06
2erk_A	365	Phosphorylated Map Kinase Erk2 Length = 365		8e-06
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		8e-06
2i1m_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An		8e-06
3bea_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A P		8e-06
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		8e-06
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		8e-06
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		8e-06
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		8e-06
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		8e-06
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		8e-06
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		8e-06
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		9e-06
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		9e-06
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		9e-06
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		9e-06
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		9e-06
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		9e-06
2i0v_A	335	C-Fms Tyrosine Kinase In Complex With A Quinolone I		9e-06
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		9e-06
2eu9_A	355	Crystal Structure Of Clk3 Length = 355		9e-06
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		9e-06
2exe_A	357	Crystal Structure Of The Phosphorylated Clk3 Length		9e-06
2wu6_A	381	Crystal Structure Of The Human Clk3 In Complex With		9e-06
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		1e-05
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		1e-05
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		1e-05
3mh0_A	360	Mutagenesis Of P38 Map Kinase Eshtablishes Key Role		1e-05
3o8p_A	360	Conformational Plasticity Of P38 Map Kinase Dfg Mot		1e-05
3coi_A	353	Crystal Structure Of P38delta Kinase Length = 353		1e-05
2p2i_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-05
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		1e-05
1rjb_A	344	Crystal Structure Of Flt3 Length = 344		1e-05
2p2h_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-05
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		1e-05
2oh4_A	316	Crystal Structure Of Vegfr2 With A Benzimidazole-Ur		1e-05
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		1e-05
1ywn_A	316	Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]p		1e-05
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		1e-05
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		1e-05
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		1e-05
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		1e-05
3gi3_A	360	Crystal Structure Of A N-Phenyl-N'-Naphthylurea Ana		1e-05
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		1e-05
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-05
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		1e-05
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		1e-05
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		1e-05
3my0_A	305	Crystal Structure Of The Acvrl1 (Alk1) Kinase Domai		1e-05
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		1e-05
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		1e-05
2dyl_A	318	Crystal Structure Of Human Mitogen-Activated Protei		1e-05
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		1e-05
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		1e-05
3mh3_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		1e-05
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		1e-05
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		1e-05
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		1e-05
3mh1_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		1e-05
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		1e-05
1vr2_A	316	Human Vascular Endothelial Growth Factor Receptor 2		1e-05
4exu_A	371	Mapk13, Inactive Form Length = 371		2e-05
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		2e-05
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		2e-05
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		2e-05
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		2e-05
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		2e-05
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		2e-05
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		2e-05
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		2e-05
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		2e-05
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		2e-05
3hng_A	360	Crystal Structure Of Vegfr1 In Complex With N-(4-ch		2e-05
1how_A	373	The X-Ray Crystal Structure Of Sky1p, An Sr Protein		2e-05
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		2e-05
3g51_A	325	Structural Diversity Of The Active Conformation Of		2e-05
1q8y_A	373	The Structure Of The Yeast Sr Protein Kinase, Sky1p		2e-05
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		2e-05
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		2e-05
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		2e-05
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		2e-05
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		2e-05
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		2e-05
4g5p_A	330	Crystal Structure Of Egfr Kinase T790m In Complex W		2e-05
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		2e-05
3ug1_A	334	Crystal Structure Of The Mutated Egfr Kinase Domain		2e-05
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		2e-05
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		2e-05
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		2e-05
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		2e-05
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		2e-05
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		2e-05
4i24_A	329	Structure Of T790m Egfr Kinase Domain Co-crystalliz		2e-05
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		2e-05
2jit_A	327	Crystal Structure Of Egfr Kinase Domain T790m Mutat		2e-05
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		2e-05
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		2e-05
2jiu_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		2e-05
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		2e-05
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		2e-05
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		2e-05
2jiv_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		2e-05
3ika_A	331	Crystal Structure Of Egfr 696-1022 T790m Mutant Cov		2e-05
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		2e-05
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		2e-05
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		3e-05
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		3e-05
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		3e-05
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		3e-05
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		3e-05
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		3e-05
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		3e-05
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-05
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		3e-05
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		3e-05
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		3e-05
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		3e-05
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		3e-05
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		3e-05
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		3e-05
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		3e-05
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		3e-05
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		3e-05
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		4e-05
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		4e-05
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		4e-05
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		4e-05
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		4e-05
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		4e-05
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		4e-05
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		4e-05
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		4e-05
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		4e-05
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		4e-05
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		4e-05
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		4e-05
1vjy_A	303	Crystal Structure Of A Naphthyridine Inhibitor Of H		4e-05
1b6c_B	342	Crystal Structure Of The Cytoplasmic Domain Of The		4e-05
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		4e-05
1rw8_A	301	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		4e-05
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		4e-05
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		4e-05
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		4e-05
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		4e-05
1py5_A	326	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		4e-05
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		4e-05
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		4e-05
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		4e-05
3tzm_A	309	Tgf-Beta Receptor Type 1 In Complex With Sb431542 L		4e-05
2wot_A	306	Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)		4e-05
2ycf_A	322	Crystal Structure Of Checkpoint Kinase 2 In Complex		5e-05
2qr8_A	342	2.0a X-ray Structure Of C-terminal Kinase Domain Of		5e-05
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		5e-05
3hko_A	345	Crystal Structure Of A Cdpk Kinase Domain From Cryp		5e-05
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		5e-05
2ycr_A	323	Crystal Structure Of Checkpoint Kinase 2 In Complex		5e-05
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		5e-05
2w0j_A	323	Crystal Structure Of Chk2 In Complex With Nsc 10955		5e-05
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		5e-05
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		5e-05
3gop_A	361	Crystal Structure Of The Egf Receptor Juxtamembrane		5e-05
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		5e-05
2xk9_A	322	Structural Analysis Of Checkpoint Kinase 2 (Chk2) I		5e-05
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		5e-05
4fie_A	423	Full-Length Human Pak4 Length = 423		5e-05
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		5e-05
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		5e-05
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		5e-05
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		5e-05
2qr7_A	342	2.0a X-Ray Structure Of C-Terminal Kinase Domain Of		5e-05
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		5e-05
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		5e-05
4g5j_A	330	Crystal Structure Of Egfr Kinase In Complex With Bi		5e-05
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		5e-05
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		5e-05
2gs2_A	330	Crystal Structure Of The Active Egfr Kinase Domain		5e-05
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		5e-05
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		5e-05
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		5e-05
2gs7_A	330	Crystal Structure Of The Inactive Egfr Kinase Domai		5e-05
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		5e-05
2j5f_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		5e-05
2cn5_A	329	Crystal Structure Of Human Chk2 In Complex With Adp		5e-05
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		6e-05
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		6e-05
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		6e-05
2eb2_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (G7		6e-05
2j5e_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		6e-05
4i23_A	329	Crystal Structure Of The Wild-type Egfr Kinase Doma		6e-05
2itn_A	327	Crystal Structure Of Egfr Kinase Domain G719s Mutat		6e-05
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		6e-05
1xkk_A	352	Egfr Kinase Domain Complexed With A Quinazoline Inh		6e-05
1m14_A	333	Tyrosine Kinase Domain From Epidermal Growth Factor		6e-05
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		6e-05
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		6e-05
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		6e-05
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		6e-05
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		6e-05
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		6e-05
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		6e-05
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		6e-05
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		6e-05
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		7e-05
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		7e-05
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		7e-05
3i6u_A	419	Structure And Activation Mechanism Of The Chk2 Dna-		7e-05
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		7e-05
3i6w_A	443	Structure And Activation Mechanism Of The Chk2 Dna-		7e-05
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		8e-05
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		8e-05
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		8e-05
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		8e-05
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		8e-05
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		8e-05
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		8e-05
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		8e-05
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		8e-05
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		8e-05
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		8e-05
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		9e-05
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		9e-05
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		9e-05
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		9e-05
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		9e-05
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		9e-05
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		1e-04
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		1e-04
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		1e-04
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-04
2vag_A	339	Crystal Structure Of Di-Phosphorylated Human Clk1 I		1e-04
3uiu_A	306	Crystal Structure Of Apo-Pkr Kinase Domain Length =		1e-04
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		1e-04
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		1e-04
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		1e-04
4i1z_A	329	Crystal Structure Of The Monomeric (v948r) Form Of		1e-04
3fhr_A	336	High Resolution Crystal Structure Of Mitogen-Activa		1e-04
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		1e-04
3r1n_A	317	Mk3 Kinase Bound To Compound 5b Length = 317		1e-04
4i21_A	329	Crystal Structure Of L858r + T790m Egfr Kinase Doma		1e-04
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		1e-04
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		1e-04
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		1e-04
3qd2_B	332	Crsytal Structure Of Mouse Perk Kinase Domain Lengt		1e-04
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-04
3w2o_A	331	Egfr Kinase Domain T790m/l858r Mutant With Tak-285		1e-04
3vn9_A	340	Rifined Crystal Structure Of Non-Phosphorylated Map		1e-04
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		1e-04
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		1e-04
3g0f_A	336	Kit Kinase Domain Mutant D816h In Complex With Suni		2e-04
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		2e-04
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		2e-04
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		2e-04
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		2e-04
1pkg_A	329	Structure Of A C-kit Kinase Product Complex Length		2e-04
1t45_A	331	Structural Basis For The Autoinhibition And Sti-571		2e-04
2rfd_A	324	Crystal Structure Of The Complex Between The Egfr K		2e-04
4hzs_A	341	Crystal Structure Of Ack1 Kinase Domain With C-term		2e-04
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		2e-04
1t46_A	313	Structural Basis For The Autoinhibition And Sti-571		2e-04
3g0e_A	336	Kit Kinase Domain In Complex With Sunitinib Length		2e-04
4hzr_A	277	Crystal Structure Of Ack1 Kinase Domain Length = 27		2e-04
4ewh_B	275	Co-Crystal Structure Of Ack1 With Inhibitor Length		2e-04
1rdq_E	350	Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of		2e-04
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		2e-04
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		2e-04
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		2e-04
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		2e-04
1u54_A	291	Crystal Structures Of The Phosphorylated And Unphos		2e-04
3eqp_B	276	Crystal Structure Of Ack1 With Compound T95 Length		2e-04
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		2e-04
2jkm_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		2e-04
4id7_A	273	Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-		2e-04
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		2e-04
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		2e-04
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		2e-04
3pxk_A	282	Focal Adhesion Kinase Catalytic Domain In Complex W		2e-04
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		2e-04
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		2e-04
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		2e-04
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		2e-04
1mp8_A	281	Crystal Structure Of Focal Adhesion Kinase (Fak) Le		2e-04
2etm_A	281	Crystal Structure Of Focal Adhesion Kinase Domain C		2e-04
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		2e-04
1u46_A	291	Crystal Structure Of The Unphosphorylated Kinase Do		2e-04
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		2e-04
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		2e-04
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		2e-04
4ebw_A	304	Structure Of Focal Adhesion Kinase Catalytic Domain		2e-04
3bz3_A	276	Crystal Structure Analysis Of Focal Adhesion Kinase		3e-04
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		3e-04
2j0m_B	276	Crystal Structure A Two-Chain Complex Between The F		3e-04
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		3e-04
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		3e-04
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		3e-04
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		3e-04
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		3e-04
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		3e-04
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		3e-04
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		3e-04
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		3e-04
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		3e-04
2i6l_A	320	Crystal Structure Of Human Mitogen Activated Protei		3e-04
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		3e-04
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		3e-04
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		3e-04
2eb3_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (L8		3e-04
3fv8_A	355	Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Le		3e-04
3fi2_A	353	Crystal Structure Of Jnk3 With Amino-Pyrazole Inhib		3e-04
2f9g_A	353	Crystal Structure Of Fus3 Phosphorylated On Tyr182		3e-04
4i20_A	329	Crystal Structure Of Monomeric (v948r) Primary Onco		3e-04
2itt_A	327	Crystal Structure Of Egfr Kinase Domain L858r Mutat		3e-04
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		3e-04
3tku_A	433	Mrck Beta In Complex With Fasudil Length = 433		3e-04
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		3e-04
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		3e-04
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		3e-04
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		3e-04
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		3e-04
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		3e-04
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		3e-04
2b9h_A	353	Crystal Structure Of Fus3 With A Docking Motif From		3e-04
2j0j_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		3e-04
3qfv_A	415	Mrck Beta In Complex With Tpca-1 Length = 415		4e-04
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		4e-04
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		4e-04
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		4e-04
2b9f_A	353	Crystal Structure Of Non-Phosphorylated Fus3 Length		4e-04
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		4e-04
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		4e-04
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		4e-04
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		4e-04
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		4e-04
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		4e-04
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		4e-04
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		4e-04
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		4e-04
3ttj_A	464	Crystal Structure Of Jnk3 Complexed With Cc-359, A		4e-04
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		4e-04
3elj_A	369	Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine		4e-04
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		4e-04
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		4e-04
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		4e-04
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		4e-04
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		4e-04
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		4e-04
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		4e-04
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		4e-04
2ok1_A	365	Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3		4e-04
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		4e-04
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		4e-04
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		5e-04
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		5e-04
2o0u_A	364	Crystal Structure Of Human Jnk3 Complexed With N-{3		5e-04
1pmn_A	364	Crystal Structure Of Jnk3 In Complex With An Imidaz		5e-04
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		5e-04
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		5e-04
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		5e-04
3pze_A	358	Jnk1 In Complex With Inhibitor Length = 358		5e-04
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		5e-04
3mdy_A	337	Crystal Structure Of The Cytoplasmic Domain Of The		5e-04
2exc_X	356	Inhibitor Complex Of Jnk3 Length = 356		5e-04
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		5e-04
3oxi_A	362	Design And Synthesis Of Disubstituted Thiophene And		5e-04
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		5e-04
3ptg_A	363	Design And Synthesis Of A Novel, Orally Efficacious		5e-04
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		5e-04
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		5e-04
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		5e-04
2b1p_A	355	Inhibitor Complex Of Jnk3 Length = 355		5e-04
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		5e-04
4h36_A	356	Crystal Structure Of Jnk3 In Complex With Atf2 Pept		5e-04
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		5e-04
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		5e-04
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		5e-04
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		5e-04
3fme_A	290	Crystal Structure Of Human Mitogen-Activated Protei		5e-04
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		5e-04
4ae9_A	343	Structure And Function Of The Human Sperm-specific		5e-04
1jnk_A	423	The C-Jun N-Terminal Kinase (Jnk3s) Complexed With		5e-04
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		5e-04
4ae6_A	343	Structure And Function Of The Human Sperm-specific		5e-04
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		5e-04
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		5e-04
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		5e-04
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		5e-04
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		6e-04
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		6e-04
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		6e-04
1zxe_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		6e-04
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		7e-04
2j0l_A	276	Crystal Structure Of A The Active Conformation Of T		7e-04
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		7e-04
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		7e-04
2i0e_A	353	Structure Of Catalytic Domain Of Human Protein Kina		7e-04
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		7e-04
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		7e-04
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		7e-04
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		8e-04
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		8e-04
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		8e-04
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		8e-04
3o17_A	370	Crystal Structure Of Jnk1-Alpha1 Isoform Length = 3		8e-04
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		8e-04
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		9e-04
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		9e-04
2pml_X	348	Crystal Structure Of Pfpk7 In Complex With An Atp A		9e-04
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		9e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Query: 83  IEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTG 142
           I + +++G+AYLH+ C  KI+H D+K  ++LLDE F     DFGLAKL + +  H+    
Sbjct: 144 IALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXA- 202
Query: 143 RRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLE 184
            R T G  APE       ++K DVF +G++L E++  +R  +
Sbjct: 203 VRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFD 244

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 83  IEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTG 142
           I + +++G+AYLH+ C  KI+H D+K  ++LLDE F     DFGLAKL + +  H+    
Sbjct: 136 IALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAV 195
Query: 143 RRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLE 184
           R    G  APE       ++K DVF +G++L E++  +R  +
Sbjct: 196 RGXI-GHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFD 236

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 9/120 (7%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR-EHTH 137
           Q  EI +  ++G+ YLH    + I+H D+K  ++LLDENF PK  DFG++K     + TH
Sbjct: 140 QRLEICIGAARGLHYLHT---RAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTH 196
Query: 138 ITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR----RNLEKEISEGQEW 193
           +     + T G   PE ++   +T+K DV+SFG++LFEV+  R    ++L +E+    EW
Sbjct: 197 LXXV-VKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEW 255

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 9/120 (7%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR-EHTH 137
           Q  EI +  ++G+ YLH    + I+H D+K  ++LLDENF PK  DFG++K       TH
Sbjct: 140 QRLEICIGAARGLHYLHT---RAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTH 196
Query: 138 ITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR----RNLEKEISEGQEW 193
           +     + T G   PE ++   +T+K DV+SFG++LFEV+  R    ++L +E+    EW
Sbjct: 197 LXXV-VKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEW 255

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 11/110 (10%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+++ FG      +  ++G+ YL E   QK VH D+   + +LDE+F  K ADFGLA+ +
Sbjct: 124 KDLISFG------LQVARGMEYLAE---QKFVHRDLAARNCMLDESFTVKVADFGLARDI 174
Query: 131 YNREHTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGR 179
            +RE+  +      R P    A E    Y  T K DV+SFG+LL+E++ R
Sbjct: 175 LDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTR 224

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 21/115 (18%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+++GFG      +  +KG+ YL     +K VH D+   + +LDE F  K ADFGLA+ +
Sbjct: 133 KDLIGFG------LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 183
Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPY------SVTQKCDVFSFGMLLFEVVGR 179
           Y++E+  +         G + P  WM          T K DV+SFG+LL+E++ R
Sbjct: 184 YDKEYYSV-----HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 233

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 21/115 (18%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+++GFG      +  +KG+ YL     +K VH D+   + +LDE F  K ADFGLA+ +
Sbjct: 133 KDLIGFG------LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 183
Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPY------SVTQKCDVFSFGMLLFEVVGR 179
           Y++E+  +         G + P  WM          T K DV+SFG+LL+E++ R
Sbjct: 184 YDKEYYSV-----HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 233

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 21/115 (18%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+++GFG      +  +KG+ YL     +K VH D+   + +LDE F  K ADFGLA+ +
Sbjct: 151 KDLIGFG------LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 201
Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPY------SVTQKCDVFSFGMLLFEVVGR 179
           Y++E+  +         G + P  WM          T K DV+SFG+LL+E++ R
Sbjct: 202 YDKEYYSV-----HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 251

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 21/115 (18%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+++GFG      +  +KG+ YL     +K VH D+   + +LDE F  K ADFGLA+ +
Sbjct: 132 KDLIGFG------LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 182
Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPY------SVTQKCDVFSFGMLLFEVVGR 179
           Y++E+  +         G + P  WM          T K DV+SFG+LL+E++ R
Sbjct: 183 YDKEYYSV-----HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 232

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 21/115 (18%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+++GFG      +  +KG+ YL     +K VH D+   + +LDE F  K ADFGLA+ +
Sbjct: 131 KDLIGFG------LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 181
Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPY------SVTQKCDVFSFGMLLFEVVGR 179
           Y++E+  +         G + P  WM          T K DV+SFG+LL+E++ R
Sbjct: 182 YDKEYYSV-----HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 231

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 21/115 (18%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+++GFG      +  +KG+ YL     +K VH D+   + +LDE F  K ADFGLA+ +
Sbjct: 130 KDLIGFG------LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 180
Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPY------SVTQKCDVFSFGMLLFEVVGR 179
           Y++E+  +         G + P  WM          T K DV+SFG+LL+E++ R
Sbjct: 181 YDKEYYSV-----HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 230

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 21/115 (18%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+++GFG      +  +KG+ YL     +K VH D+   + +LDE F  K ADFGLA+ +
Sbjct: 152 KDLIGFG------LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 202
Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPY------SVTQKCDVFSFGMLLFEVVGR 179
           Y++E+  +         G + P  WM          T K DV+SFG+LL+E++ R
Sbjct: 203 YDKEYYSV-----HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 252

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 21/115 (18%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+++GFG      +  +KG+ YL     +K VH D+   + +LDE F  K ADFGLA+ +
Sbjct: 125 KDLIGFG------LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 175
Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPY------SVTQKCDVFSFGMLLFEVVGR 179
           Y++E+  +         G + P  WM          T K DV+SFG+LL+E++ R
Sbjct: 176 YDKEYYSV-----HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 225

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 21/115 (18%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+++GFG      +  +KG+ YL     +K VH D+   + +LDE F  K ADFGLA+ +
Sbjct: 128 KDLIGFG------LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 178
Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPY------SVTQKCDVFSFGMLLFEVVGR 179
           Y++E+  +         G + P  WM          T K DV+SFG+LL+E++ R
Sbjct: 179 YDKEYYSV-----HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 228

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 21/115 (18%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+++GFG      +  +KG+ YL     +K VH D+   + +LDE F  K ADFGLA+ +
Sbjct: 132 KDLIGFG------LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 182
Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPY------SVTQKCDVFSFGMLLFEVVGR 179
           Y++E   +         G + P  WM          T K DV+SFG+LL+E++ R
Sbjct: 183 YDKEXXSV-----HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 232

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 61/102 (59%), Gaps = 6/102 (5%)
Query: 85  VSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN-FFPKAADFGLAKLYNREHTHITSTGR 143
           +  S+G+AYLH    + ++H D+KP ++LL       K  DFG A       TH+T+   
Sbjct: 109 LQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTA---CDIQTHMTNN-- 163
Query: 144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEK 185
           + +    APE++   + ++KCDVFS+G++L+EV+ RR+  ++
Sbjct: 164 KGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDE 205

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 61/102 (59%), Gaps = 6/102 (5%)
Query: 85  VSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN-FFPKAADFGLAKLYNREHTHITSTGR 143
           +  S+G+AYLH    + ++H D+KP ++LL       K  DFG A       TH+T+   
Sbjct: 110 LQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTA---CDIQTHMTNN-- 164
Query: 144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEK 185
           + +    APE++   + ++KCDVFS+G++L+EV+ RR+  ++
Sbjct: 165 KGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDE 206

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 44  FSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLRE-----IEVSTSKGIAYLHEEC 98
           F   V      + +  +L+ G  Y L  K+     QL E     +    +KG+ YLH   
Sbjct: 99  FMGAVTQPPNLSIVTEYLSRGSLYRLLHKSG-AREQLDERRRLSMAYDVAKGMNYLHNR- 156
Query: 99  RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPY 158
              IVH ++K  ++L+D+ +  K  DFGL++L  +  T ++S     TP   APE+    
Sbjct: 157 NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRL--KASTFLSSKSAAGTPEWMAPEVLRDE 214
Query: 159 SVTQKCDVFSFGMLLFEVV 177
              +K DV+SFG++L+E+ 
Sbjct: 215 PSNEKSDVYSFGVILWELA 233

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 21/115 (18%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+++GFG      +  +KG+ +L     +K VH D+   + +LDE F  K ADFGLA+ +
Sbjct: 131 KDLIGFG------LQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 181
Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPY------SVTQKCDVFSFGMLLFEVVGR 179
           Y++E   +         G + P  WM          T K DV+SFG+LL+E++ R
Sbjct: 182 YDKEFDSV-----HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 231

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 21/115 (18%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+++GFG      +  +KG+ +L     +K VH D+   + +LDE F  K ADFGLA+ +
Sbjct: 133 KDLIGFG------LQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 183
Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPY------SVTQKCDVFSFGMLLFEVVGR 179
           Y++E   +         G + P  WM          T K DV+SFG+LL+E++ R
Sbjct: 184 YDKEFDSV-----HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 233

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 21/115 (18%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+++GFG      +  +KG+ +L     +K VH D+   + +LDE F  K ADFGLA+ +
Sbjct: 134 KDLIGFG------LQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 184
Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPY------SVTQKCDVFSFGMLLFEVVGR 179
           Y++E   +         G + P  WM          T K DV+SFG+LL+E++ R
Sbjct: 185 YDKEFDSV-----HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 234

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 21/115 (18%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+++GFG      +  +KG+ +L     +K VH D+   + +LDE F  K ADFGLA+ +
Sbjct: 133 KDLIGFG------LQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 183
Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPY------SVTQKCDVFSFGMLLFEVVGR 179
           Y++E   +         G + P  WM          T K DV+SFG+LL+E++ R
Sbjct: 184 YDKEFDSV-----HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 233

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 21/115 (18%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+++GFG      +  +KG+ +L     +K VH D+   + +LDE F  K ADFGLA+ +
Sbjct: 192 KDLIGFG------LQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 242
Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPY------SVTQKCDVFSFGMLLFEVVGR 179
           Y++E   +         G + P  WM          T K DV+SFG+LL+E++ R
Sbjct: 243 YDKEFDSV-----HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 292

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 21/115 (18%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+++GFG      +  +KG+ +L     +K VH D+   + +LDE F  K ADFGLA+ +
Sbjct: 138 KDLIGFG------LQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 188
Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPY------SVTQKCDVFSFGMLLFEVVGR 179
           Y++E   +         G + P  WM          T K DV+SFG+LL+E++ R
Sbjct: 189 YDKEFDSV-----HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 238

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST 141
           +I    + GI +LHE      +H DIK  ++LLDE F  K +DFGLA+   +    +  +
Sbjct: 128 KIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVXXS 184
Query: 142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
               T    APE  +   +T K D++SFG++L E++
Sbjct: 185 RIVGTTAYXAPE-ALRGEITPKSDIYSFGVVLLEII 219

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 19/132 (14%)
Query: 65  PFYLLC----KKNILGF-----------GQLREIEVSTSKGIAYLHEECRQKIVHYDIKP 109
           P Y++C    K ++L F            QL ++    + G+AY+    R   VH D++ 
Sbjct: 86  PIYIVCEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRA 142
Query: 110 ESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSF 169
            ++L+ EN   K ADFGLA+L   ++ +    G +      APE  +    T K DV+SF
Sbjct: 143 ANILVGENLVCKVADFGLARLIE-DNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSF 201
Query: 170 GMLLFEVVGRRR 181
           G+LL E+  + R
Sbjct: 202 GILLTELTTKGR 213

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 44  FSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLRE-----IEVSTSKGIAYLHEEC 98
           F   V      + +  +L+ G  Y L  K+     QL E     +    +KG+ YLH   
Sbjct: 99  FMGAVTQPPNLSIVTEYLSRGSLYRLLHKSG-AREQLDERRRLSMAYDVAKGMNYLHNR- 156
Query: 99  RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPY 158
              IVH D+K  ++L+D+ +  K  DFGL++L  +    + S     TP   APE+    
Sbjct: 157 NPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRL--KASXFLXSKXAAGTPEWMAPEVLRDE 214
Query: 159 SVTQKCDVFSFGMLLFEVV 177
              +K DV+SFG++L+E+ 
Sbjct: 215 PSNEKSDVYSFGVILWELA 233

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST 141
           +I    + GI +LHE      +H DIK  ++LLDE F  K +DFGLA+   +    +  +
Sbjct: 137 KIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXS 193
Query: 142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
               T    APE  +   +T K D++SFG++L E++
Sbjct: 194 RIVGTTAYMAPE-ALRGEITPKSDIYSFGVVLLEII 228

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 25/122 (20%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + Y H   R KIVH D+KPE++LLDE+   K ADFGL        ++I + G      C
Sbjct: 124 AVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGL--------SNIMTDGNFLKTSC 172
Query: 150 EAPELWMPYSVTQK------CDVFSFGMLLFEVVGRRRNLE--------KEISEGQEWFP 195
            +P    P  ++ K       DV+S G++L+ ++ RR   +        K IS G    P
Sbjct: 173 GSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLP 232
Query: 196 KW 197
           K+
Sbjct: 233 KF 234

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 25/122 (20%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + Y H   R KIVH D+KPE++LLDE+   K ADFGL        ++I + G      C
Sbjct: 125 AVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGL--------SNIMTDGNFLKTSC 173
Query: 150 EAPELWMPYSVTQK------CDVFSFGMLLFEVVGRRRNLE--------KEISEGQEWFP 195
            +P    P  ++ K       DV+S G++L+ ++ RR   +        K IS G    P
Sbjct: 174 GSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLP 233
Query: 196 KW 197
           K+
Sbjct: 234 KF 235

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   QL ++    + G+AY+    R   VH D++  ++L+ EN   K ADFGLA+L   +
Sbjct: 108 LRLPQLVDMSAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIE-D 163
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE  +    T K DV+SFG+LL E+  + R
Sbjct: 164 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 210

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 15/117 (12%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + Y H   R KIVH D+KPE++LLDE+   K ADFGL+ +    +   TS G   +P  
Sbjct: 119 AVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCG---SPNY 172
Query: 150 EAPELWM-PYSVTQKCDVFSFGMLLFEVVGRRRNLE--------KEISEGQEWFPKW 197
            APE+         + DV+S G++L+ ++ RR   +        K IS G    PK+
Sbjct: 173 AAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKF 229

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 25/122 (20%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + Y H   R KIVH D+KPE++LLDE+   K ADFGL        ++I + G      C
Sbjct: 115 AVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGL--------SNIMTDGNFLKTSC 163
Query: 150 EAPELWMPYSVTQK------CDVFSFGMLLFEVVGRRRNLE--------KEISEGQEWFP 195
            +P    P  ++ K       DV+S G++L+ ++ RR   +        K IS G    P
Sbjct: 164 GSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLP 223
Query: 196 KW 197
           K+
Sbjct: 224 KF 225

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   QL ++    + G+AY+    R   VH D++  ++L+ EN   K ADFGLA+L   +
Sbjct: 104 LRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIE-D 159
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE  +    T K DV+SFG+LL E+  + R
Sbjct: 160 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 206

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   QL ++    + G+AY+    R   VH D++  ++L+ EN   K ADFGLA+L   +
Sbjct: 277 LRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIE-D 332
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE  +    T K DV+SFG+LL E+  + R
Sbjct: 333 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 379

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   QL ++    + G+AY+    R   VH D++  ++L+ EN   K ADFGLA+L   +
Sbjct: 277 LRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIE-D 332
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE  +    T K DV+SFG+LL E+  + R
Sbjct: 333 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 379

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   QL ++    + G+AY+    R   VH D++  ++L+ EN   K ADFGLA+L   +
Sbjct: 102 LRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIE-D 157
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE  +    T K DV+SFG+LL E+  + R
Sbjct: 158 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 204

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST 141
           +I    + GI +LHE      +H DIK  ++LLDE F  K +DFGLA+   +    +   
Sbjct: 131 KIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVMXX 187
Query: 142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
               T    APE  +   +T K D++SFG++L E++
Sbjct: 188 RIVGTTAYMAPE-ALRGEITPKSDIYSFGVVLLEII 222

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   QL ++    + G+AY+    R   VH D++  ++L+ EN   K ADFGLA+L   +
Sbjct: 277 LRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIE-D 332
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE  +    T K DV+SFG+LL E+  + R
Sbjct: 333 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 379

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   QL ++    + G+AY+    R   VH D++  ++L+ EN   K ADFGLA+L   +
Sbjct: 111 LRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIE-D 166
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE  +    T K DV+SFG+LL E+  + R
Sbjct: 167 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   QL ++    + G+AY+    R   VH D++  ++L+ EN   K ADFGLA+L   +
Sbjct: 100 LRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIE-D 155
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE  +    T K DV+SFG+LL E+  + R
Sbjct: 156 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 202

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   QL ++    + G+AY+    R   VH D++  ++L+ EN   K ADFGLA+L   +
Sbjct: 111 LRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIE-D 166
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE  +    T K DV+SFG+LL E+  + R
Sbjct: 167 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   QL ++    + G+AY+    R   VH D++  ++L+ EN   K ADFGLA+L   +
Sbjct: 111 LRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIE-D 166
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE  +    T K DV+SFG+LL E+  + R
Sbjct: 167 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   QL ++    + G+AY+    R   VH D++  ++L+ EN   K ADFGLA+L   +
Sbjct: 111 LRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIE-D 166
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE  +    T K DV+SFG+LL E+  + R
Sbjct: 167 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   QL ++    + G+AY+    R   VH D++  ++L+ EN   K ADFGLA+L   +
Sbjct: 111 LRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIE-D 166
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE  +    T K DV+SFG+LL E+  + R
Sbjct: 167 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST 141
           +I    + GI +LHE      +H DIK  ++LLDE F  K +DFGLA+   +    +   
Sbjct: 137 KIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXX 193
Query: 142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
               T    APE  +   +T K D++SFG++L E++
Sbjct: 194 RIVGTTAYMAPE-ALRGEITPKSDIYSFGVVLLEII 228

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL ++    + G+AY+    R   VH D++  ++L+ EN   K ADFGLA+L   ++ + 
Sbjct: 364 QLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLI-EDNEYT 419
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
              G +      APE  +    T K DV+SFG+LL E+  + R
Sbjct: 420 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 462

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   QL ++    + G+AY+    R   VH D+   ++L+ EN   K ADFGLA+L   +
Sbjct: 111 LRLPQLVDMAAQIASGMAYVE---RMNYVHRDLAAANILVGENLVCKVADFGLARLIE-D 166
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE  +    T K DV+SFG+LL E+  + R
Sbjct: 167 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           + F  L       ++G+ YL     QK +H D+   +VL+ EN   K ADFGLA+  N  
Sbjct: 154 MTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 210
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
             +  +T  R      APE       T + DV+SFG+L++E+
Sbjct: 211 DYYKNTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 252

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL  ++ +     L  + +   +G+AYL E C   ++H D+   + L+ EN   K +DFG
Sbjct: 95  YLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFG 151
Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           + + +  +  + +STG +      +PE++     + K DV+SFG+L++EV
Sbjct: 152 MTR-FVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEV 200

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL  ++ +     L  + +   +G+AYL E C   ++H D+   + L+ EN   K +DFG
Sbjct: 93  YLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFG 149
Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           + + +  +  + +STG +      +PE++     + K DV+SFG+L++EV
Sbjct: 150 MTR-FVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEV 198

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   QL ++    + G+AY+    R   VH D++  ++L+ EN   K ADFGLA+L   +
Sbjct: 108 LRLPQLVDMSAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIE-D 163
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           +      G +      APE  +    T K DV+SFG+LL E+  + R
Sbjct: 164 NEWTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 210

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 19/157 (12%)
Query: 42  DNFSNLVGSEDTET-------YIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYL 94
           +N    +G+E   T        I  F   G      K N++ + +L  I  + ++G+AYL
Sbjct: 78  ENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYL 137
Query: 95  HEEC-------RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           HE+        +  I H DIK ++VLL  N     ADFGLA  +    +   + G+  T 
Sbjct: 138 HEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTR 197
Query: 148 GCEAPELWMPYSVTQ-----KCDVFSFGMLLFEVVGR 179
              APE+       Q     + D+++ G++L+E+  R
Sbjct: 198 RYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASR 234

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   QL ++    + G+AY+    R   VH D++  ++L+ EN   K ADFGLA+L   +
Sbjct: 101 LRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIE-D 156
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           +      G +      APE  +    T K DV+SFG+LL E+  + R
Sbjct: 157 NEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 203

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL  ++ +     L  + +   +G+AYL E C   ++H D+   + L+ EN   K +DFG
Sbjct: 90  YLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFG 146
Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           + + +  +  + +STG +      +PE++     + K DV+SFG+L++EV
Sbjct: 147 MTR-FVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEV 195

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 15/104 (14%)
Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH------ITST 141
           + G+AYLH      I+H D+   + L+ EN     ADFGLA+L   E T       +   
Sbjct: 118 ASGMAYLHS---MNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKP 174
Query: 142 GRRR------TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGR 179
            R++       P   APE+    S  +K DVFSFG++L E++GR
Sbjct: 175 DRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGR 218

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   QL ++    + G+AY+    R   VH D++  ++L+ EN   K ADFGLA+L   +
Sbjct: 111 LRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIE-D 166
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           +      G +      APE  +    T K DV+SFG+LL E+  + R
Sbjct: 167 NEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL  ++ +     L  + +   +G+AYL E C   ++H D+   + L+ EN   K +DFG
Sbjct: 112 YLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFG 168
Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           + + +  +  + +STG +      +PE++     + K DV+SFG+L++EV
Sbjct: 169 MTR-FVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEV 217

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL  ++ +     L  + +   +G+AYL E C   ++H D+   + L+ EN   K +DFG
Sbjct: 92  YLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFG 148
Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           + + +  +  + +STG +      +PE++     + K DV+SFG+L++EV
Sbjct: 149 MTR-FVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEV 197

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 21/115 (18%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-L 130
           K+++GFG      +  +KG+ +L     +K VH D+   + +LDE F  K ADFGLA+ +
Sbjct: 134 KDLIGFG------LQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 184
Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPY------SVTQKCDVFSFGMLLFEVVGR 179
            ++E   +         G + P  WM          T K DV+SFG+LL+E++ R
Sbjct: 185 LDKEFDSV-----HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 234

>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565a Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           + F  L       ++G+ YL     QK +H D+   +VL+ EN   K ADFGLA+  N  
Sbjct: 154 MTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 210
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
             +  +T  R      APE       T + DV+SFG+L++E+
Sbjct: 211 DYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 252

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           + F  L       ++G+ YL     QK +H D+   +VL+ EN   K ADFGLA+  N  
Sbjct: 154 MTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 210
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
             +  +T  R      APE       T + DV+SFG+L++E+
Sbjct: 211 DYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 252

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           + F  L       ++G+ YL     QK +H D+   +VL+ EN   K ADFGLA+  N  
Sbjct: 154 MTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 210
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
             +  +T  R      APE       T + DV+SFG+L++E+
Sbjct: 211 DYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 252

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           + F  L       ++G+ YL     QK +H D+   +VL+ EN   K ADFGLA+  N  
Sbjct: 143 MTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 199
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
             +  +T  R      APE       T + DV+SFG+L++E+
Sbjct: 200 DYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 241

>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565g Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           + F  L       ++G+ YL     QK +H D+   +VL+ EN   K ADFGLA+  N  
Sbjct: 154 MTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 210
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
             +  +T  R      APE       T + DV+SFG+L++E+
Sbjct: 211 DYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 252

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           + F  L       ++G+ YL     QK +H D+   +VL+ EN   K ADFGLA+  N  
Sbjct: 154 MTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 210
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
             +  +T  R      APE       T + DV+SFG+L++E+
Sbjct: 211 DYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 252

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           + F  L       ++G+ YL     QK +H D+   +VL+ EN   K ADFGLA+  N  
Sbjct: 146 MTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 202
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
             +  +T  R      APE       T + DV+SFG+L++E+
Sbjct: 203 DYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 244

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           + F  L       ++G+ YL     QK +H D+   +VL+ EN   K ADFGLA+  N  
Sbjct: 141 MTFKDLVSCTYQLARGMEYL---ASQKCIHRDLTARNVLVTENNVMKIADFGLARDINNI 197
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
             +  +T  R      APE       T + DV+SFG+L++E+
Sbjct: 198 DYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 239

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL ++    + G+AY+    R   VH D++  ++L+ EN   K ADFGL +L   ++ + 
Sbjct: 282 QLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLGRLI-EDNEYT 337
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
              G +      APE  +    T K DV+SFG+LL E+  + R
Sbjct: 338 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 380

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           + F  L       ++G+ YL     QK +H D+   +VL+ EN   K ADFGLA+  N  
Sbjct: 200 MTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 256
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
             +  +T  R      APE       T + DV+SFG+L++E+
Sbjct: 257 DYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 298

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           + F  L       ++G+ YL     QK +H D+   +VL+ EN   K ADFGLA+  N  
Sbjct: 154 MTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 210
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
                +T  R      APE       T + DV+SFG+L++E+
Sbjct: 211 DXXKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 252

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           + F  L       ++G+ YL     QK +H D+   +VL+ EN   K ADFGLA+  N  
Sbjct: 154 MTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 210
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
                +T  R      APE       T + DV+SFG+L++E+
Sbjct: 211 DXXKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 252

>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K641r Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           + F  L       ++G+ YL     QK +H D+   +VL+ EN   + ADFGLA+  N  
Sbjct: 154 MTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMRIADFGLARDINNI 210
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
             +  +T  R      APE       T + DV+SFG+L++E+
Sbjct: 211 DYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 252

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 7/134 (5%)
Query: 47  LVGSEDTETYIKGFLAMGPFYLLCKKNILG---FGQLREIEVSTSKGIAYLHEECRQKIV 103
           +V  E+    I  ++A G      K +  G     +L +     ++G+AY+    R+  +
Sbjct: 76  VVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIE---RKNYI 132
Query: 104 HYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQK 163
           H D++  +VL+ E+   K ADFGLA++   ++ +    G +      APE       T K
Sbjct: 133 HRDLRAANVLVSESLMCKIADFGLARVI-EDNEYTAREGAKFPIKWTAPEAINFGCFTIK 191
Query: 164 CDVFSFGMLLFEVV 177
            DV+SFG+LL+E+V
Sbjct: 192 SDVWSFGILLYEIV 205

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 8/92 (8%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            I Y H   R KIVH D+KPE++LLD+N   K ADFGL+ +    +   TS G   +P  
Sbjct: 120 AIEYCH---RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCG---SPNY 173
Query: 150 EAPELWM-PYSVTQKCDVFSFGMLLF-EVVGR 179
            APE+         + DV+S G++L+  +VGR
Sbjct: 174 AAPEVINGKLYAGPEVDVWSCGIVLYVMLVGR 205

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL E+     +G+A+L      + +H D+   + L+D +   K +DFG+ + Y  +  ++
Sbjct: 105 QLLEMCYDVCEGMAFLES---HQFIHRDLAARNCLVDRDLCVKVSDFGMTR-YVLDDQYV 160
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           +S G +      APE++  +  + K DV++FG+L++EV
Sbjct: 161 SSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEV 198

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 76  GFGQLREI--EVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR 133
           GF + R I        G+ +LH+   + I++ D+KPE+VLLD++   + +D GLA     
Sbjct: 285 GFQEPRAIFYTAQIVSGLEHLHQ---RNIIYRDLKPENVLLDDDGNVRISDLGLAVELKA 341
Query: 134 EHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
             T   + G   TPG  APEL +        D F+ G+ L+E++  R
Sbjct: 342 GQTK--TKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAAR 386

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 76  GFGQLREI--EVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR 133
           GF + R I        G+ +LH+   + I++ D+KPE+VLLD++   + +D GLA     
Sbjct: 285 GFQEPRAIFYTAQIVSGLEHLHQ---RNIIYRDLKPENVLLDDDGNVRISDLGLAVELKA 341
Query: 134 EHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
             T   + G   TPG  APEL +        D F+ G+ L+E++  R
Sbjct: 342 GQTK--TKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAAR 386

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 76  GFGQLREI--EVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR 133
           GF + R I        G+ +LH+   + I++ D+KPE+VLLD++   + +D GLA     
Sbjct: 285 GFQEPRAIFYTAQIVSGLEHLHQ---RNIIYRDLKPENVLLDDDGNVRISDLGLAVELKA 341
Query: 134 EHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
             T   + G   TPG  APEL +        D F+ G+ L+E++  R
Sbjct: 342 GQTK--TKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAAR 386

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 7/134 (5%)
Query: 47  LVGSEDTETYIKGFLAMGPFYLLCKKNILG---FGQLREIEVSTSKGIAYLHEECRQKIV 103
           +V  E+    I  F+A G      K +  G     +L +     ++G+AY+    R+  +
Sbjct: 75  VVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIE---RKNYI 131
Query: 104 HYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQK 163
           H D++  +VL+ E+   K ADFGLA++   ++ +    G +      APE       T K
Sbjct: 132 HRDLRAANVLVSESLMCKIADFGLARVI-EDNEYTAREGAKFPIKWTAPEAINFGCFTIK 190
Query: 164 CDVFSFGMLLFEVV 177
            +V+SFG+LL+E+V
Sbjct: 191 SNVWSFGILLYEIV 204

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 76  GFGQLREI--EVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR 133
           GF + R I        G+ +LH+   + I++ D+KPE+VLLD++   + +D GLA     
Sbjct: 285 GFQEPRAIFYTAQIVSGLEHLHQ---RNIIYRDLKPENVLLDDDGNVRISDLGLAVELKA 341
Query: 134 EHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
             T   + G   TPG  APEL +        D F+ G+ L+E++  R
Sbjct: 342 GQTK--TKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAAR 386

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 60  FLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF 119
           ++ +G       ++ +G  QL        +G+AYLH    Q  +H D+   +VLLD +  
Sbjct: 116 YVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHA---QHYIHRDLAARNVLLDNDRL 172
Query: 120 PKAADFGLAKLYNREHTHITSTGRRRTPG-CEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            K  DFGLAK     H          +P    APE    Y      DV+SFG+ L+E++
Sbjct: 173 VKIGDFGLAKAVPEGHEXYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELL 231

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 14/134 (10%)
Query: 50  SEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKP 109
            E +   +  ++ +G       ++ +G  QL        +G+AYLH    Q  +H  +  
Sbjct: 84  GEKSVQLVMEYVPLGSLRDYLPRHCVGLAQLLLFAQQICEGMAYLHA---QHYIHRALAA 140
Query: 110 ESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKC----- 164
            +VLLD +   K  DFGLAK     H +     R R  G ++P  W      ++C     
Sbjct: 141 RNVLLDNDRLVKIGDFGLAKAVPEGHEYY----RVREDG-DSPVFWYAPECLKECKFYYA 195
Query: 165 -DVFSFGMLLFEVV 177
            DV+SFG+ L+E++
Sbjct: 196 SDVWSFGVTLYELL 209

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Query: 60  FLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF 119
           ++ +G       ++ +G  QL        +G+AYLH    Q  +H ++   +VLLD +  
Sbjct: 99  YVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHS---QHYIHRNLAARNVLLDNDRL 155
Query: 120 PKAADFGLAKLYNREHTHITSTGRRRTPG-CEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            K  DFGLAK     H +        +P    APE    Y      DV+SFG+ L+E++
Sbjct: 156 VKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELL 214

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 14/134 (10%)
Query: 50  SEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKP 109
            E +   +  ++ +G       ++ +G  QL        +G+AYLH    Q  +H  +  
Sbjct: 83  GEKSVQLVMEYVPLGSLRDYLPRHCVGLAQLLLFAQQICEGMAYLHA---QHYIHRALAA 139
Query: 110 ESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKC----- 164
            +VLLD +   K  DFGLAK     H +     R R  G ++P  W      ++C     
Sbjct: 140 RNVLLDNDRLVKIGDFGLAKAVPEGHEYY----RVREDG-DSPVFWYAPECLKECKFYYA 194
Query: 165 -DVFSFGMLLFEVV 177
            DV+SFG+ L+E++
Sbjct: 195 SDVWSFGVTLYELL 208

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Query: 60  FLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF 119
           ++ +G       ++ +G  QL        +G+AYLH    Q  +H ++   +VLLD +  
Sbjct: 99  YVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHA---QHYIHRNLAARNVLLDNDRL 155
Query: 120 PKAADFGLAKLYNREHTHITSTGRRRTPG-CEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            K  DFGLAK     H +        +P    APE    Y      DV+SFG+ L+E++
Sbjct: 156 VKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELL 214

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 4/110 (3%)
Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL  ++ +     L  + +   +G+AYL E     ++H D+   + L+ EN   K +DFG
Sbjct: 92  YLRTQRGLFAAETLLGMCLDVCEGMAYLEE---ASVIHRDLAARNCLVGENQVIKVSDFG 148
Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           + + +  +  + +STG +      +PE++     + K DV+SFG+L++EV
Sbjct: 149 MTR-FVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEV 197

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 16/112 (14%)
Query: 74  ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY-- 131
           +L    ++   + T +G+ YLH+     I+H D+KP ++LLDEN   K ADFGLAK +  
Sbjct: 108 VLTPSHIKAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKSFGS 164
Query: 132 -NREHTHITSTGRRRTPGCEAPELWMP---YSVTQKCDVFSFGMLLFEVVGR 179
            NR + H   T   R     APEL      Y V    D+++ G +L E++ R
Sbjct: 165 PNRAYXHQVVTRWYR-----APELLFGARMYGVG--VDMWAVGCILAELLLR 209

>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase Domain From Human Length = 314

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 57  IKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEE---CRQK-----IVHYDIK 108
           I  F   G      K NI+ + +L  +  + S+G++YLHE+   CR +     I H D K
Sbjct: 91  ITAFHDKGSLTDYLKGNIITWNELCHVAETMSRGLSYLHEDVPWCRGEGHKPSIAHRDFK 150
Query: 109 PESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQ-----K 163
            ++VLL  +     ADFGLA  +        + G+  T    APE+       Q     +
Sbjct: 151 SKNVLLKSDLTAVLADFGLAVRFEPGKPPGDTHGQVGTRRYMAPEVLEGAINFQRDAFLR 210
Query: 164 CDVFSFGMLLFEVVGRRRNLEKEISE 189
            D+++ G++L+E+V R +  +  + E
Sbjct: 211 IDMYAMGLVLWELVSRCKAADGPVDE 236

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   +L ++    ++G+A++ E   +  +H D++  ++L+ +    K ADFGLA+L   +
Sbjct: 112 LTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLI-ED 167
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE     + T K DV+SFG+LL E+V   R
Sbjct: 168 NEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR 214

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   +L ++    ++G+A++ E   +  +H D++  ++L+ +    K ADFGLA+L   +
Sbjct: 106 LTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLI-ED 161
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE     + T K DV+SFG+LL E+V   R
Sbjct: 162 NEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR 208

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   +L ++    ++G+A++ E   +  +H D++  ++L+ +    K ADFGLA+L   +
Sbjct: 101 LTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLI-ED 156
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE     + T K DV+SFG+LL E+V   R
Sbjct: 157 NEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR 203

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   +L ++    ++G+A++ E   +  +H D++  ++L+ +    K ADFGLA+L   +
Sbjct: 111 LTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLI-ED 166
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE     + T K DV+SFG+LL E+V   R
Sbjct: 167 NEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR 213

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L    L ++    + G+AY+    R   +H D++  ++L+      K ADFGLA+L   +
Sbjct: 102 LKLPNLVDMAAQVAAGMAYIE---RMNYIHRDLRSANILVGNGLICKIADFGLARLI-ED 157
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           +      G +      APE  +    T K DV+SFG+LL E+V + R
Sbjct: 158 NEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGR 204

>pdb|3NR9|A Chain A, Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length = 368

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 29/137 (21%)
Query: 60  FLAMGPFYLLCKKNILGF--GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL--- 114
            L +  F  L   N L +   Q+R +     + + +LH+    K+ H D+KPE++L    
Sbjct: 117 LLGLSTFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHD---NKLTHTDLKPENILFVNS 173
Query: 115 ------------DENFFPKAA----DFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPY 158
                       DE      A    DFG A   +  H+ I ST   R     APE+ +  
Sbjct: 174 DYELTYNLEKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYR-----APEVILEL 228
Query: 159 SVTQKCDVFSFGMLLFE 175
             +Q CDV+S G ++FE
Sbjct: 229 GWSQPCDVWSIGCIIFE 245

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 22/110 (20%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           +L +I   T++G+ YLH +    I+H D+K  ++ L E+   K  DFGLA + +R     
Sbjct: 133 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRW---- 185
Query: 139 TSTGRRRTPGCEAPELWM-----------PYSVTQKCDVFSFGMLLFEVV 177
             +G  +        LWM           PYS   + DV++FG++L+E++
Sbjct: 186 --SGSHQFEQLSGSILWMAPEVIRMQDKNPYSF--QSDVYAFGIVLYELM 231

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 18/108 (16%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL +I   T++G+ YLH    + I+H D+K  ++ L E    K  DFGLA + +R     
Sbjct: 133 QLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW---- 185
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQ---------KCDVFSFGMLLFEVV 177
             +G ++        LWM   V +         + DV+S+G++L+E++
Sbjct: 186 --SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELM 231

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 22/110 (20%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           +L +I   T++G+ YLH +    I+H D+K  ++ L E+   K  DFGLA + +R     
Sbjct: 132 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRW---- 184
Query: 139 TSTGRRRTPGCEAPELWM-----------PYSVTQKCDVFSFGMLLFEVV 177
             +G  +        LWM           PYS   + DV++FG++L+E++
Sbjct: 185 --SGSHQFEQLSGSILWMAPEVIRMQDKNPYSF--QSDVYAFGIVLYELM 230

>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase Domain Complexed With Amp-Pnp Length = 327

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 26/126 (20%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT 139
           L +I ++T K + +L E    KI+H DIKP ++LLD +   K  DFG++         + 
Sbjct: 127 LGKITLATVKALNHLKENL--KIIHRDIKPSNILLDRSGNIKLCDFGISG------QLVD 178
Query: 140 STGRRRTPGCE---APELWMPYSVTQ----KCDVFSFGMLLFEVVGRRRNLEKEISEGQE 192
           S  + R  GC    APE   P +  Q    + DV+S G+ L+           E++ G+ 
Sbjct: 179 SIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLY-----------ELATGRF 227
Query: 193 WFPKWG 198
            +PKW 
Sbjct: 228 PYPKWN 233

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           F  +CK   L   + R +      G+ Y H   R  +VH D+KPE+VLLD +   K ADF
Sbjct: 104 FDYICKNGRLDEKESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADF 160
Query: 126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQK------CDVFSFGMLLFEVV 177
           GL+ +         S G      C +P    P  ++ +       D++S G++L+ ++
Sbjct: 161 GLSNM--------MSDGEFLRXSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALL 210

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   +L ++    ++G+A++ E   +  +H D++  ++L+ +    K ADFGLA+L   +
Sbjct: 116 LTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLI-ED 171
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE     + T K DV+SFG+LL E+V   R
Sbjct: 172 NEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR 218

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 22/110 (20%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           +L +I   T++G+ YLH +    I+H D+K  ++ L E+   K  DFGLA + +R     
Sbjct: 110 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRW---- 162
Query: 139 TSTGRRRTPGCEAPELWM-----------PYSVTQKCDVFSFGMLLFEVV 177
             +G  +        LWM           PYS   + DV++FG++L+E++
Sbjct: 163 --SGSHQFEQLSGSILWMAPEVIRMQDKNPYSF--QSDVYAFGIVLYELM 208

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 49  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 108
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 109 SAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 164
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+    G +      APE       + K DV++FG+LL+E+ 
Sbjct: 165 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 206

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 22/110 (20%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           +L +I   T++G+ YLH +    I+H D+K  ++ L E+   K  DFGLA + +R     
Sbjct: 107 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRW---- 159
Query: 139 TSTGRRRTPGCEAPELWM-----------PYSVTQKCDVFSFGMLLFEVV 177
             +G  +        LWM           PYS   + DV++FG++L+E++
Sbjct: 160 --SGSHQFEQLSGSILWMAPEVIRMQDKNPYSF--QSDVYAFGIVLYELM 205

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 144 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQY 200
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S ++  D+++ G +++++V 
Sbjct: 201 VSPELLTEKSASKSSDLWALGCIIYQLVA 229

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 22/110 (20%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           +L +I   T++G+ YLH +    I+H D+K  ++ L E+   K  DFGLA + +R     
Sbjct: 110 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRW---- 162
Query: 139 TSTGRRRTPGCEAPELWM-----------PYSVTQKCDVFSFGMLLFEVV 177
             +G  +        LWM           PYS   + DV++FG++L+E++
Sbjct: 163 --SGSHQFEQLSGSILWMAPEVIRMQDKNPYSF--QSDVYAFGIVLYELM 208

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTE---TYIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 62  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 121
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 122 NAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 177
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+    G +      APE       + K DV++FG+LL+E+ 
Sbjct: 178 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 219

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 49  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 108
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 109 SAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 164
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+    G +      APE       + K DV++FG+LL+E+ 
Sbjct: 165 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 206

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 51  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 110
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 111 NAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 166
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+    G +      APE       + K DV++FG+LL+E+ 
Sbjct: 167 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 208

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 22/110 (20%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           +L +I   T++G+ YLH +    I+H D+K  ++ L E+   K  DFGLA + +R     
Sbjct: 105 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRW---- 157
Query: 139 TSTGRRRTPGCEAPELWM-----------PYSVTQKCDVFSFGMLLFEVV 177
             +G  +        LWM           PYS   + DV++FG++L+E++
Sbjct: 158 --SGSHQFEQLSGSILWMAPEVIRMQDKNPYSF--QSDVYAFGIVLYELM 203

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 51  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 110
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 111 NAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 166
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+    G +      APE       + K DV++FG+LL+E+ 
Sbjct: 167 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 208

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 22/110 (20%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           +L +I   T++G+ YLH +    I+H D+K  ++ L E+   K  DFGLA + +R     
Sbjct: 105 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRW---- 157
Query: 139 TSTGRRRTPGCEAPELWM-----------PYSVTQKCDVFSFGMLLFEVV 177
             +G  +        LWM           PYS   + DV++FG++L+E++
Sbjct: 158 --SGSHQFEQLSGSILWMAPEVIRMQDKNPYSF--QSDVYAFGIVLYELM 203

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 54  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 113
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 114 SAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 169
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+    G +      APE       + K DV++FG+LL+E+ 
Sbjct: 170 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 211

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 49  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 108
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 109 NAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 164
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+    G +      APE       + K DV++FG+LL+E+ 
Sbjct: 165 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 206

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 49  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 108
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 109 NAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 164
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+    G +      APE       + K DV++FG+LL+E+ 
Sbjct: 165 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 206

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 54  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 113
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 114 NAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 169
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+    G +      APE       + K DV++FG+LL+E+ 
Sbjct: 170 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 211

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 50  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 109
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 110 NAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 165
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+    G +      APE       + K DV++FG+LL+E+ 
Sbjct: 166 TYTAPAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 207

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 51  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 110
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 111 NAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 166
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+    G +      APE       + K DV++FG+LL+E+ 
Sbjct: 167 TYTAPAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 208

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 54  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 113
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 114 NAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 169
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+    G +      APE       + K DV++FG+LL+E+ 
Sbjct: 170 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 211

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 53  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 112
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 113 NAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 168
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+    G +      APE       + K DV++FG+LL+E+ 
Sbjct: 169 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 210

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 142 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANAFVGTAQY 198
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 199 VSPELLTEKSACKSSDLWALGCIIYQLVA 227

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L  G L       S+G+ YL E    K+VH D+   ++L+ E    K +DFGL++    E
Sbjct: 147 LTMGDLISFAWQISQGMQYLAE---MKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEE 203
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            +++  +  R      A E    +  T + DV+SFG+LL+E+V
Sbjct: 204 DSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIV 246

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   +L ++    ++G+A++ E   +  +H D++  ++L+ +    K ADFGLA+L   +
Sbjct: 106 LTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLI-ED 161
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           +      G +      APE     + T K DV+SFG+LL E+V   R
Sbjct: 162 NEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR 208

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 49  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEV 108
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 109 SAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 164
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+    G +      APE       + K DV++FG+LL+E+ 
Sbjct: 165 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 206

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 18/105 (17%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL       ++G+ YL +   ++ +H D+   ++L+ EN+  K ADFGL++    +  ++
Sbjct: 143 QLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSR---GQEVYV 196
Query: 139 TSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
             T  R       P  WM      YSV T   DV+S+G+LL+E+V
Sbjct: 197 KKTMGR------LPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIV 235

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 18/109 (16%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   QL       ++G+ YL +   ++ +H D+   ++L+ EN+  K ADFGL++    +
Sbjct: 129 LSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSR---GQ 182
Query: 135 HTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
             ++  T  R       P  WM      YSV T   DV+S+G+LL+E+V
Sbjct: 183 EVYVKKTMGR------LPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIV 225

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 49  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEV 108
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 109 SAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 164
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+    G +      APE       + K DV++FG+LL+E+ 
Sbjct: 165 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 206

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   +L ++    ++G+A++ E   +  +H D++  ++L+ +    K ADFGLA+L   +
Sbjct: 107 LTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLI-ED 162
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           +      G +      APE     + T K DV+SFG+LL E+V   R
Sbjct: 163 NEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR 209

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   +L ++    ++G+A++ E   +  +H D++  ++L+ +    K ADFGLA+L   +
Sbjct: 108 LTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLI-ED 163
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           +      G +      APE     + T K DV+SFG+LL E+V   R
Sbjct: 164 NEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR 210

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 145 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQY 201
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 202 VSPELLTEKSACKSSDLWALGCIIYQLVA 230

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDEN---FFPKAADFGLAKLYNREHTHITSTGRRRT 146
           GI YLH   +  IVH DIKPE++LL+        K  DFGL+  +++++      G   T
Sbjct: 158 GICYLH---KHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLG---T 211
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLF 174
               APE+ +     +KCDV+S G++++
Sbjct: 212 AYYIAPEV-LKKKYNEKCDVWSCGVIMY 238

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   +L ++    ++G+A++ E   +  +H D++  ++L+ +    K ADFGLA+L   +
Sbjct: 106 LTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLI-ED 161
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           +      G +      APE     + T K DV+SFG+LL E+V   R
Sbjct: 162 NEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR 208

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKXQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 133 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDXELKILDFGLAR-----HTDDEMTGYVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 47  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 106
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 107 SAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 162
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T     G +      APE       + K DV++FG+LL+E+ 
Sbjct: 163 TXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 204

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   +L ++    ++G+A++ E   +  +H D++  ++L+ +    K ADFGLA+L   +
Sbjct: 115 LTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLI-ED 170
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           +      G +      APE     + T K DV+SFG+LL E+V   R
Sbjct: 171 NEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR 217

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   +L ++    ++G+A++ E   +  +H D++  ++L+ +    K ADFGLA+L   +
Sbjct: 112 LTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLI-ED 167
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           +      G +      APE     + T K DV+SFG+LL E+V   R
Sbjct: 168 NEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR 214

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 141 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQY 197
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 198 VSPELLTEKSACKSSDLWALGCIIYQLVA 226

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 22/110 (20%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           +L +I   T++G+ YLH +    I+H D+K  ++ L E+   K  DFGLA + +R     
Sbjct: 109 KLIDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRW---- 161
Query: 139 TSTGRRRTPGCEAPELWM-----------PYSVTQKCDVFSFGMLLFEVV 177
             +G  +        LWM           PYS   + DV++FG++L+E++
Sbjct: 162 --SGSHQFEQLSGSILWMAPEVIRMQDSNPYSF--QSDVYAFGIVLYELM 207

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 54  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEV 113
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 114 NAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 169
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+    G +      APE       + K DV++FG+LL+E+ 
Sbjct: 170 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 211

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   +L ++    ++G+A++ E   +  +H D++  ++L+ +    K ADFGLA+L   +
Sbjct: 114 LTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLI-ED 169
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           +      G +      APE     + T K DV+SFG+LL E+V   R
Sbjct: 170 NEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR 216

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 47  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 106
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 107 SAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 162
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T     G +      APE       + K DV++FG+LL+E+ 
Sbjct: 163 TFTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 204

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 144 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQY 200
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 201 VSPELLTEKSAXKSSDLWALGCIIYQLVA 229

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 144 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQY 200
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 201 VSPELLTEKSACKSSDLWALGCIIYQLVA 229

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 69  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCAKLTDDHVQFLIY 128
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 129 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 180
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 181 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 216

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 78  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 137
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 138 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDXELKILDFGLAR-----HTDDEMTGYVA 189
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 190 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 225

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           +G+ +LH  C   IVH D+KPE++L+      K ADFGLA++Y+ +   +  T    T  
Sbjct: 131 RGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQ---MALTPVVVTLW 184
Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
             APE+ +  +     D++S G +  E+  R+
Sbjct: 185 YRAPEVLLQSTYATPVDMWSVGCIFAEMFRRK 216

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 78  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 137
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 138 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDXELKILDFGLAR-----HTDDEMTGYVA 189
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 190 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 225

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 12/101 (11%)
Query: 85  VSTSKGIAYLHEECRQKIVHYDIKPESVLLDE--------NFFPKAADFGLAKLYNREHT 136
           V  ++G+ YLH+E    I+H D+K  ++L+ +        N   K  DFGLA+ ++R  T
Sbjct: 112 VQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRT-T 170
Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            +++ G        APE+      ++  DV+S+G+LL+E++
Sbjct: 171 KMSAAGAY---AWMAPEVIRASMFSKGSDVWSYGVLLWELL 208

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKXQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 133 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 142 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQY 198
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 199 VSPELLTEKSACKSSDLWALGCIIYQLVA 227

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 32/153 (20%)
Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           F  L +K  L   + R I  S  + +++LH      IVH D+KPE++LLD+N   + +DF
Sbjct: 188 FDYLTEKVALSEKETRSIMRSLLEAVSFLHA---NNIVHRDLKPENILLDDNMQIRLSDF 244
Query: 126 GLAKLYNREHTHITSTGRRR----TPGCEAPELWMPYSVTQ-------KCDVFSFGMLLF 174
           G +        H+    + R    TPG  APE+ +  S+ +       + D+++ G++LF
Sbjct: 245 GFS-------CHLEPGEKLRELCGTPGYLAPEI-LKCSMDETHPGYGKEVDLWACGVILF 296
Query: 175 EVVG-------RRRNLE-KEISEGQEWF--PKW 197
            ++        RR+ L  + I EGQ  F  P+W
Sbjct: 297 TLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEW 329

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 120 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQY 176
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 177 VSPELLTEKSACKSSDLWALGCIIYQLVA 205

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 149 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQY 205
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 206 VSPELLTEKSACKSSDLWALGCIIYQLVA 234

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 144 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQY 200
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 201 VSPELLTEKSACKSSDLWALGCIIYQLVA 229

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 144 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQY 200
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 201 VSPELLTEKSACKSSDLWALGCIIYQLVA 229

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 142 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQY 198
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 199 VSPELLTEKSACKSSDLWALGCIIYQLVA 227

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 142 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQY 198
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 199 VSPELLTEKSACKSSDLWALGCIIYQLVA 227

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 121 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQY 177
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 178 VSPELLTEKSACKSSDLWALGCIIYQLVA 206

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 144 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQY 200
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 201 VSPELLTEKSACKSSDLWALGCIIYQLVA 229

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 145 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQY 201
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 202 VSPELLTEKSACKSSDLWALGCIIYQLVA 230

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 54  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 113
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 114 NAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 169
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T     G +      APE       + K DV++FG+LL+E+ 
Sbjct: 170 TXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 211

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   +L ++    ++G+A++ E   +  +H D++  ++L+ +    K ADFGLA+L   E
Sbjct: 106 LTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLI--E 160
Query: 135 HTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
               T+    + P    APE     + T K DV+SFG+LL E+V   R
Sbjct: 161 DAEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR 208

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 119 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQY 175
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 176 VSPELLTEKSACKSSDLWALGCIIYQLVA 204

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 84  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 143
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 144 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDXELKILDFGLAR-----HTDDEMTGYVA 195
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 196 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 231

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 147 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQY 203
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 204 VSPELLTEKSACKSSDLWALGCIIYQLVA 232

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 42  DNFSNLVGSED-TETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQ 100
           D F+     ED +E Y+   L       + K   L    ++ +     +G+ Y+H     
Sbjct: 94  DVFTPATSIEDFSEVYLVTTLMGADLNNIVKSQALSDEHVQFLVYQLLRGLKYIHSAG-- 151
Query: 101 KIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSV 160
            I+H D+KP +V ++E+   +  DFGLA+  + E T   +T   R P  E    WM Y+ 
Sbjct: 152 -IIHRDLKPSNVAVNEDSELRILDFGLARQADEEMTGYVATRWYRAP--EIMLNWMHYN- 207
Query: 161 TQKCDVFSFGMLLFEVV 177
            Q  D++S G ++ E++
Sbjct: 208 -QTVDIWSVGCIMAELL 223

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 126 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQY 182
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 183 VSPELLTEKSACKSSDLWALGCIIYQLVA 211

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   +L ++    ++G+A++ E   +  +H +++  ++L+ +    K ADFGLA+L   +
Sbjct: 102 LTINKLLDMAAQIAEGMAFIEE---RNYIHRNLRAANILVSDTLSCKIADFGLARLI-ED 157
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           + +    G +      APE     + T K DV+SFG+LL E+V   R
Sbjct: 158 NEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR 204

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
           G+ YLH   +  IVH D+KPE++LL   +++   K  DFGL+ ++  +       G   T
Sbjct: 148 GVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLG---T 201
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLF 174
               APE+ +     +KCDV+S G++LF
Sbjct: 202 AYYIAPEV-LRKKYDEKCDVWSIGVILF 228

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 133 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 133 QILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 122 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQY 178
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 179 VSPELLTEKSACKSSDLWALGCIIYQLVA 207

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 133 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 73  NILGFGQLREIEVSTS-----KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL 127
           ++L  G L E +++T      KG+ YLH E   K +H DIK  +VLL E+   K ADFG+
Sbjct: 109 DLLEPGPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGV 165
Query: 128 AKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           A       T I       TP   APE+    +   K D++S G+   E+ 
Sbjct: 166 AG--QLTDTQIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELA 213

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 78  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 137
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 138 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 189
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 190 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 225

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I+H D+KPE++LL+E+   +  DFG AK+ + E     +     T   
Sbjct: 141 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQY 197
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            +PEL    S  +  D+++ G +++++V 
Sbjct: 198 VSPELLTEKSACKSSDLWALGCIIYQLVA 226

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 133 QILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGXVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 72  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 131
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 132 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 183
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 184 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 219

>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836 Length = 273

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST 141
           E+    S G+ YL E      VH D+   +VLL    + K +DFGL+K    +  +  + 
Sbjct: 109 ELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 165
Query: 142 GRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
              + P    APE    Y  + K DV+SFG+L++E 
Sbjct: 166 THGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEA 201

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 22/110 (20%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           +L +I   T++G+ YLH +    I+H D+K  ++ L E+   K  DFGLA   +R     
Sbjct: 133 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRW---- 185
Query: 139 TSTGRRRTPGCEAPELWM-----------PYSVTQKCDVFSFGMLLFEVV 177
             +G  +        LWM           PYS   + DV++FG++L+E++
Sbjct: 186 --SGSHQFEQLSGSILWMAPEVIRMQDKNPYSF--QSDVYAFGIVLYELM 231

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 22/110 (20%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           +L +I   T++G+ YLH +    I+H D+K  ++ L E+   K  DFGLA   +R     
Sbjct: 125 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRW---- 177
Query: 139 TSTGRRRTPGCEAPELWM-----------PYSVTQKCDVFSFGMLLFEVV 177
             +G  +        LWM           PYS   + DV++FG++L+E++
Sbjct: 178 --SGSHQFEQLSGSILWMAPEVIRMQDKNPYSF--QSDVYAFGIVLYELM 223

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 73  NILGFGQLREIEVSTS-----KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL 127
           ++L  G L E +++T      KG+ YLH E   K +H DIK  +VLL E+   K ADFG+
Sbjct: 94  DLLEPGPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGV 150
Query: 128 AKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           A       T I       TP   APE+    +   K D++S G+   E+ 
Sbjct: 151 AG--QLTDTQIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELA 198

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            ++G+ YL     +K +H D+   +VL+ E+   K ADFGLA+  +    +  +T  R  
Sbjct: 151 VARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP 207
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               APE       T + DV+SFG+LL+E+
Sbjct: 208 VKWMAPEALFDRIYTHQSDVWSFGVLLWEI 237

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            ++G+ YL     +K +H D+   +VL+ E+   K ADFGLA+  +    +  +T  R  
Sbjct: 159 VARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP 215
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               APE       T + DV+SFG+LL+E+
Sbjct: 216 VKWMAPEALFDRIYTHQSDVWSFGVLLWEI 245

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 133 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 133 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 83  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 142
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 143 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 194
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 195 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 230

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            ++G+ YL     +K +H D+   +VL+ E+   K ADFGLA+  +    +  +T  R  
Sbjct: 159 VARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP 215
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               APE       T + DV+SFG+LL+E+
Sbjct: 216 VKWMAPEALFDRIYTHQSDVWSFGVLLWEI 245

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 73  NILGFGQLREIEVSTS-----KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL 127
           ++L  G L E +++T      KG+ YLH E   K +H DIK  +VLL E+   K ADFG+
Sbjct: 94  DLLEPGPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGV 150
Query: 128 AKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           A       T I       TP   APE+    +   K D++S G+   E+ 
Sbjct: 151 AG--QLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELA 198

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L  G L       S+G+ YL E    K+VH D+   ++L+ E    K +DFGL++    E
Sbjct: 147 LTMGDLISFAWQISQGMQYLAE---MKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEE 203
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            + +  +  R      A E    +  T + DV+SFG+LL+E+V
Sbjct: 204 DSXVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIV 246

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 79  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 138
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 139 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDSELKILDFGLAR-----HTDDEMTGYVA 190
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 191 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 226

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 80  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 139
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 140 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 191
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 192 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 227

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            ++G+ YL     +K +H D+   +VL+ E+   K ADFGLA+  +    +  +T  R  
Sbjct: 148 VARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP 204
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               APE       T + DV+SFG+LL+E+
Sbjct: 205 VKWMAPEALFDRIYTHQSDVWSFGVLLWEI 234

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            ++G+ YL     +K +H D+   +VL+ E+   K ADFGLA+  +    +  +T  R  
Sbjct: 152 VARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP 208
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               APE       T + DV+SFG+LL+E+
Sbjct: 209 VKWMAPEALFDRIYTHQSDVWSFGVLLWEI 238

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 75  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 134
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 135 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 186
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 187 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 222

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 133 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 75  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 134
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 135 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 186
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 187 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 222

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 85  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 144
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 145 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 196
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 197 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 232

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 75  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 134
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 135 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 186
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 187 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 222

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 85  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 144
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 145 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 196
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 197 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 232

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 133 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With A Sulfonamidopyrazine Piperidine Inhibitor Length = 274

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST 141
           E+    S G+ YL E      VH D+   +VLL    + K +DFGL+K    +  +  + 
Sbjct: 111 ELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 167
Query: 142 GRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
              + P    APE    Y  + K DV+SFG+L++E 
Sbjct: 168 THGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEA 203

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 79  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 138
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 139 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 190
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 191 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 226

>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST 141
           E+    S G+ YL E      VH D+   +VLL    + K +DFGL+K    +  +  + 
Sbjct: 115 ELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 171
Query: 142 GRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
              + P    APE    Y  + K DV+SFG+L++E 
Sbjct: 172 THGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEA 207

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 79  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 138
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 139 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 190
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 191 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 226

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 73  NILGFGQLREIEVSTS-----KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL 127
           ++L  G   E +++T      KG+ YLH E   K +H DIK  +VLL E    K ADFG+
Sbjct: 110 DLLRAGPFDEFQIATMLKEILKGLDYLHSE---KKIHRDIKAANVLLSEQGDVKLADFGV 166
Query: 128 AKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           A       T I       TP   APE+    +   K D++S G+   E+ 
Sbjct: 167 AG--QLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELA 214

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            ++G+ YL     +K +H D+   +VL+ E+   K ADFGLA+  +    +  +T  R  
Sbjct: 144 VARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP 200
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               APE       T + DV+SFG+LL+E+
Sbjct: 201 VKWMAPEALFDRIYTHQSDVWSFGVLLWEI 230

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 80  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 139
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 140 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTADEMTGYVA 191
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 192 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 227

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            ++G+ YL     +K +H D+   +VL+ E+   K ADFGLA+  +    +  +T  R  
Sbjct: 200 VARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP 256
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               APE       T + DV+SFG+LL+E+
Sbjct: 257 VKWMAPEALFDRIYTHQSDVWSFGVLLWEI 286

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 96  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 155
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 156 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 207
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 208 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 243

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 80  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 139
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 140 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTADEMTGYVA 191
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 192 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 227

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 79  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 138
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 139 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 190
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 191 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 226

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 75  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 134
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 135 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDSELKILDFGLAR-----HTDDEMTGYVA 186
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 187 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 222

>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain Length = 291

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST 141
           E+    S G+ YL E      VH D+   +VLL    + K +DFGL+K    +  +  + 
Sbjct: 121 ELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 177
Query: 142 GRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
              + P    APE    Y  + K DV+SFG+L++E 
Sbjct: 178 THGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEA 213

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 85  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 144
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 145 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 196
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 197 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 232

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 84  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 143
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 144 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 195
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 196 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 231

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 73  NILGFGQLREIEVSTS-----KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL 127
           ++L  G L E +++T      KG+ YLH E   K +H DIK  +VLL E+   K ADFG+
Sbjct: 114 DLLEPGPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGV 170
Query: 128 AKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           A       T I       TP   APE+    +   K D++S G+   E+ 
Sbjct: 171 AG--QLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELA 218

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 70  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 129
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 130 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 181
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 182 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 217

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 70  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 129
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 130 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 181
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 182 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 217

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 93  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 152
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 153 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 204
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 205 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 240

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 133 QILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 78  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 137
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 138 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 189
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 190 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 225

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 93  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 152
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 153 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 204
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 205 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 240

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            ++G+ YL     +K +H D+   +VL+ E+   K ADFGLA+  +    +  +T  R  
Sbjct: 159 VARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP 215
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               APE       T + DV+SFG+LL+E+
Sbjct: 216 VKWMAPEALFDRIYTHQSDVWSFGVLLWEI 245

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 92  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 151
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 152 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 203
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 204 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 239

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 26/170 (15%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK----KNILGF 77
           D ME+++ ++  +  + I   N   L+G    E          PFY++ +     N+L +
Sbjct: 68  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTLEP---------PFYIVTEYMPYGNLLDY 118
Query: 78  GQLREI--EVSTSKGIAYLHEEC--------RQKIVHYDIKPESVLLDENFFPKAADFGL 127
             LRE   E  T+  + Y+  +         ++  +H D+   + L+ EN   K ADFGL
Sbjct: 119 --LRECNREEVTAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHVVKVADFGL 176
Query: 128 AKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           ++L   + T+    G +      APE     + + K DV++FG+LL+E+ 
Sbjct: 177 SRLMTGD-TYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIA 225

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 50  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEV 109
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 110 NAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 165
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T     G +      APE       + K DV++FG+LL+E+ 
Sbjct: 166 TXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 207

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 92  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 151
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 152 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 203
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 204 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 239

>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 80  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 139
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 140 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTADEMTGYVA 191
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 192 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 227

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 71  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 130
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 131 QILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 182
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 183 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 218

>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylaminopyrimidines As Potent Inhibitors Of Spleen Tyrosine Kinase (Syk) Length = 291

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST 141
           E+    S G+ YL E      VH D+   +VLL    + K +DFGL+K    +  +  + 
Sbjct: 129 ELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 185
Query: 142 GRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
              + P    APE    Y  + K DV+SFG+L++E 
Sbjct: 186 THGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEA 221

>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7- Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2- Phenylcyclopropyl)urea Length = 293

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST 141
           E+    S G+ YL E      VH D+   +VLL    + K +DFGL+K    +  +  + 
Sbjct: 131 ELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 187
Query: 142 GRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
              + P    APE    Y  + K DV+SFG+L++E 
Sbjct: 188 THGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEA 223

>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic Domain With Pyrazolylbenzimidazole Inhibitor 416 Length = 299

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST 141
           E+    S G+ YL E      VH D+   +VLL    + K +DFGL+K    +  +  + 
Sbjct: 131 ELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 187
Query: 142 GRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
              + P    APE    Y  + K DV+SFG+L++E 
Sbjct: 188 THGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEA 223

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 22/110 (20%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           +L +I   T++G+ YLH +    I+H D+K  ++ L E+   K  DFGLA   +R     
Sbjct: 105 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRW---- 157
Query: 139 TSTGRRRTPGCEAPELWM-----------PYSVTQKCDVFSFGMLLFEVV 177
             +G  +        LWM           PYS   + DV++FG++L+E++
Sbjct: 158 --SGSHQFEQLSGSILWMAPEVIRMQDKNPYSF--QSDVYAFGIVLYELM 203

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 69  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 128
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 129 QILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 180
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 181 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 216

>pdb|2ONL|C Chain C, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer Length = 406

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHI 138
           EI  S  + I YLH      I H D+KPE++L      N   K  DFG AK      +H 
Sbjct: 171 EIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAK---ETTSHN 224
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           + T    TP   APE+  P    + CD++S G++++
Sbjct: 225 SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMY 260

>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2 Length = 400

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHI 138
           EI  S  + I YLH      I H D+KPE++L      N   K  DFG AK      +H 
Sbjct: 165 EIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAK---ETTSHN 218
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           + T    TP   APE+  P    + CD++S G++++
Sbjct: 219 SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMY 254

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 69  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 128
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 129 QILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 180
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 181 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 216

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 47  DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEV 106
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++L   + 
Sbjct: 107 SAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD- 162
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T     G +      APE       + K DV++FG+LL+E+ 
Sbjct: 163 TXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 204

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YLH    + I++ D+KPE++LLD+N   K  DFG AK Y  + T+        TP  
Sbjct: 118 ALEYLHS---KDIIYRDLKPENILLDKNGHIKITDFGFAK-YVPDVTYXLCG----TPDY 169
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
            APE+       +  D +SFG+L++E++ 
Sbjct: 170 IAPEVVSTKPYNKSIDWWSFGILIYEMLA 198

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 10/103 (9%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN--FFP-KAADFGLAKLY 131
           L  G + E+       +AY H    Q +VH D+KPE++L  +     P K  DFGLA+L+
Sbjct: 121 LSEGYVAELMKQMMNALAYFHS---QHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELF 177
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
             +     + G   T    APE++    VT KCD++S G++++
Sbjct: 178 KSDEHSTNAAG---TALYMAPEVF-KRDVTFKCDIWSAGVVMY 216

>pdb|2JBO|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (Crystal Form-1, Soaking) Length = 326

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHI 138
           EI  S  + I YLH      I H D+KPE++L      N   K  DFG AK      +H 
Sbjct: 127 EIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAK---ETTSHN 180
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           + T    TP   APE+  P    + CD++S G++++
Sbjct: 181 SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMY 216

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 295 DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 354
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H ++   + L+ EN   K ADFGL++L   + 
Sbjct: 355 NAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGD- 410
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+    G +      APE       + K DV++FG+LL+E+ 
Sbjct: 411 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 452

>pdb|2P3G|X Chain X, Crystal Structure Of A Pyrrolopyridine Inhibitor Bound To Mapkap Kinase-2 Length = 327

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHI 138
           EI  S  + I YLH      I H D+KPE++L      N   K  DFG AK      +H 
Sbjct: 121 EIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAK---ETTSHN 174
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           + T    TP   APE+  P    + CD++S G++++
Sbjct: 175 SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMY 210

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 22  DAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTET---YIKGFLAMGPF--YLL-CKKNIL 75
           D ME+++ ++  +  + I   N   L+G    E     I  F+  G    YL  C +  +
Sbjct: 256 DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 315
Query: 76  GFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH 135
               L  +    S  + YL    ++  +H ++   + L+ EN   K ADFGL++L   + 
Sbjct: 316 SAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGD- 371
Query: 136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+    G +      APE       + K DV++FG+LL+E+ 
Sbjct: 372 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 413

>pdb|3R2Y|A Chain A, Mk2 Kinase Bound To Compound 1 Length = 319

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHI 138
           EI  S  + I YLH      I H D+KPE++L      N   K  DFG AK      +H 
Sbjct: 120 EIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAK---ETTSHN 173
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           + T    TP   APE+  P    + CD++S G++++
Sbjct: 174 SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMY 209

>pdb|3R2B|A Chain A, Mk2 Kinase Bound To Compound 5b Length = 318

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHI 138
           EI  S  + I YLH      I H D+KPE++L      N   K  DFG AK      +H 
Sbjct: 119 EIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAK---ETTSHN 172
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           + T    TP   APE+  P    + CD++S G++++
Sbjct: 173 SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMY 208

>pdb|3GOK|A Chain A, Binding Site Mapping Of Protein Ligands Length = 334

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHI 138
           EI  S  + I YLH      I H D+KPE++L      N   K  DFG AK      +H 
Sbjct: 135 EIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAK---ETTSHN 188
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           + T    TP   APE+  P    + CD++S G++++
Sbjct: 189 SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMY 224

>pdb|2OZA|A Chain A, Structure Of P38alpha Complex Length = 356

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHI 138
           EI  S  + I YLH      I H D+KPE++L      N   K  DFG AK      +H 
Sbjct: 121 EIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAK---ETTSHN 174
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           + T    TP   APE+  P    + CD++S G++++
Sbjct: 175 SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMY 210

>pdb|3FPM|A Chain A, Crystal Structure Of A Squarate Inhibitor Bound To Mapkap Kinase-2 Length = 325

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHI 138
           EI  S  + I YLH      I H D+KPE++L      N   K  DFG AK      +H 
Sbjct: 126 EIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAK---ETTSHN 179
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           + T    TP   APE+  P    + CD++S G++++
Sbjct: 180 SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMY 215

>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHTHITS 140
           E+    S G+ YL E      VH D+   +VLL    + K +DFGL+K L   E+ +   
Sbjct: 115 ELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENXYKAQ 171
Query: 141 TGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           T  +      APE    Y  + K DV+SFG+L++E 
Sbjct: 172 THGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEA 207

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            ++G+ YL     +K +H D+   +VL+ E+   K ADFGLA+  +       +T  R  
Sbjct: 159 VARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDXXKKTTNGRLP 215
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               APE       T + DV+SFG+LL+E+
Sbjct: 216 VKWMAPEALFDRIYTHQSDVWSFGVLLWEI 245

>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase Erk1 Length = 382

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 120 DVYIVQDLMETDLYKLLKSQQLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 176
Query: 114 LDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           ++     K  DFGLA++ + EH H    T    T    APE+ +     T+  D++S G 
Sbjct: 177 INTTCDLKICDFGLARIADPEHDHTGFLTEXVATRWYRAPEIMLNSKGYTKSIDIWSVGC 236
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 237 ILAEMLSNR 245

>pdb|2PZY|A Chain A, Structure Of Mk2 Complexed With Compound 76 Length = 324

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHI 138
           EI  S  + I YLH      I H D+KPE++L      N   K  DFG AK      +H 
Sbjct: 125 EIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAK---ETTSHN 178
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           + T    TP   APE+  P    + CD++S G++++
Sbjct: 179 SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMY 214

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 42  DNFSNLVGSED-TETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQ 100
           D F+     ED +E Y+   L       + K   L    ++ +     +G+ Y+H     
Sbjct: 86  DVFTPATSIEDFSEVYLVTTLMGADLNNIVKCQALSDEHVQFLVYQLLRGLKYIHS---A 142
Query: 101 KIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSV 160
            I+H D+KP +V ++E+   +  DFGLA+  + E T   +T   R P  E    WM Y+ 
Sbjct: 143 GIIHRDLKPSNVAVNEDCELRILDFGLARQADEEMTGYVATRWYRAP--EIMLNWMHYN- 199
Query: 161 TQKCDVFSFGMLLFEVV 177
            Q  D++S G ++ E++
Sbjct: 200 -QTVDIWSVGCIMAELL 215

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 18/105 (17%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL       ++G+ YL +   ++ +H ++   ++L+ EN+  K ADFGL++    +  ++
Sbjct: 140 QLLHFAADVARGMDYLSQ---KQFIHRNLAARNILVGENYVAKIADFGLSR---GQEVYV 193
Query: 139 TSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
             T  R       P  WM      YSV T   DV+S+G+LL+E+V
Sbjct: 194 KKTMGR------LPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIV 232

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 13/95 (13%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   T  
Sbjct: 165 RGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVATRW 216
Query: 149 CEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
             APE+   WM Y++T   D++S G ++ E++  R
Sbjct: 217 YRAPEIMLNWMHYNMT--VDIWSVGCIMAELLTGR 249

>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 15/156 (9%)
Query: 37  RMIAADNFSNLVGSEDT----------ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVS 86
           +++ A    N++G  D           + YI   L     Y L K   L    +      
Sbjct: 75  KILLAFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQ 134
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT-STGRRR 145
             +G+ Y+H      ++H D+KP ++LL+     K  DFGLA++ + +H H    T    
Sbjct: 135 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVA 191
Query: 146 TPGCEAPELWM-PYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+ +     T+  D++S G +L E++  R
Sbjct: 192 TRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNR 227

>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed With A Specific Inhibitor Of Human P38 Map Kinase Length = 380

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 15/147 (10%)
Query: 46  NLVGSEDT----------ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLH 95
           N++G  D           + Y+   L     Y L K   L    +        +G+ Y+H
Sbjct: 102 NIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIH 161
Query: 96  EECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPEL 154
                 ++H D+KP ++LL+     K  DFGLA++ + +H H    T    T    APE+
Sbjct: 162 S---ANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 218
Query: 155 WM-PYSVTQKCDVFSFGMLLFEVVGRR 180
            +     T+  D++S G +L E++  R
Sbjct: 219 MLNSKGYTKSIDIWSVGCILAEMLSNR 245

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           KNI+      E+    S G+ YL E      VH D+   +VLL    + K +DFGL+K  
Sbjct: 470 KNII------ELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKAL 520
Query: 132 NREHTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
             +  +  +    + P    APE    Y  + K DV+SFG+L++E 
Sbjct: 521 RADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEA 566

>pdb|3KA0|A Chain A, Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4-Ylamino)-2- Hydroxyphenyl)-N-Methylbenzo[b]thiophene-2-Carboxamide Length = 320

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHI 138
           EI  S  + I YLH      I H D+KPE++L      N   K  DFG AK      +H 
Sbjct: 119 EIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAK---ETTSHN 172
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           + T    TP   APE+  P    + CD++S G++++
Sbjct: 173 SLTEPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMY 208

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           KNI+      E+    S G+ YL E      VH D+   +VLL    + K +DFGL+K  
Sbjct: 469 KNII------ELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKAL 519
Query: 132 NREHTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
             +  +  +    + P    APE    Y  + K DV+SFG+L++E 
Sbjct: 520 RADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEA 565

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 42  DNFSNLVGSED-TETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQ 100
           D F+     ED +E Y+   L       + K   L    ++ +     +G+ Y+H     
Sbjct: 94  DVFTPATSIEDFSEVYLVTTLMGADLNNIVKCQALSDEHVQFLVYQLLRGLKYIHS---A 150
Query: 101 KIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSV 160
            I+H D+KP +V ++E+   +  DFGLA+  + E T   +T   R P  E    WM Y+ 
Sbjct: 151 GIIHRDLKPSNVAVNEDSELRILDFGLARQADEEMTGYVATRWYRAP--EIMLNWMHYN- 207
Query: 161 TQKCDVFSFGMLLFEVV 177
            Q  D++S G ++ E++
Sbjct: 208 -QTVDIWSVGCIMAELL 223

>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 15/156 (9%)
Query: 37  RMIAADNFSNLVGSEDT----------ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVS 86
           +++ A    N++G  D           + YI   L     Y L K   L    +      
Sbjct: 75  KILLAFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQ 134
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT-STGRRR 145
             +G+ Y+H      ++H D+KP ++LL+     K  DFGLA++ + +H H    T    
Sbjct: 135 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTSDLKICDFGLARVADPDHDHTGFLTEYVA 191
Query: 146 TPGCEAPELWM-PYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+ +     T+  D++S G +L E++  R
Sbjct: 192 TRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNR 227

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           +G+ +LH  C   IVH D+KPE++L+      K ADFGLA++Y+ +           T  
Sbjct: 123 RGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALFPVV---VTLW 176
Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
             APE+ +  +     D++S G +  E+  R+
Sbjct: 177 YRAPEVLLQSTYATPVDMWSVGCIFAEMFRRK 208

>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  D+GLA+     HT    TG   
Sbjct: 133 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDYGLAR-----HTDDEMTGYVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 22/110 (20%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           +L +I   T++G+ YLH +    I+H D+K  ++ L E+   K  DFGLA   +R     
Sbjct: 121 KLIDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRW---- 173
Query: 139 TSTGRRRTPGCEAPELWM-----------PYSVTQKCDVFSFGMLLFEVV 177
             +G  +        LWM           PYS   + DV++FG++L+E++
Sbjct: 174 --SGSHQFEQLSGSILWMAPEVIRMQDSNPYSF--QSDVYAFGIVLYELM 219

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 22/110 (20%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           +L +I   T++G+ YLH +    I+H D+K  ++ L E+   K  DFGLA   +R     
Sbjct: 121 KLIDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRW---- 173
Query: 139 TSTGRRRTPGCEAPELWM-----------PYSVTQKCDVFSFGMLLFEVV 177
             +G  +        LWM           PYS   + DV++FG++L+E++
Sbjct: 174 --SGSHQFEQLSGSILWMAPEVIRMQDSNPYSF--QSDVYAFGIVLYELM 219

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           +L +     ++G+A++ +   +  +H D++  ++L+  +   K ADFGLA++   ++ + 
Sbjct: 112 KLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLARVI-EDNEYT 167
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
              G +      APE     S T K DV+SFG+LL E+V   R
Sbjct: 168 AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGR 210

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           +L +     ++G+A++ +   +  +H D++  ++L+  +   K ADFGLA++   ++ + 
Sbjct: 285 KLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLARVIE-DNEYT 340
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
              G +      APE     S T K DV+SFG+LL E+V
Sbjct: 341 AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIV 379

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K  LG  Q+  I    + G+ YL     Q  VH D+   + L+  N   K  DFG+++  
Sbjct: 127 KGELGLSQMLHIASQIASGMVYL---ASQHFVHRDLATRNCLVGANLLVKIGDFGMSR-- 181
Query: 132 NREHTHITSTGRRRTPG-CEAPELWMP------YSVTQKCDVFSFGMLLFEV 176
                 + ST   R  G    P  WMP         T + DV+SFG++L+E+
Sbjct: 182 -----DVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEI 228

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           +G+ +LH  C   IVH D+KPE++L+      K ADFGLA++Y+ +   +       T  
Sbjct: 123 RGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQ---MALAPVVVTLW 176
Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
             APE+ +  +     D++S G +  E+  R+
Sbjct: 177 YRAPEVLLQSTYATPVDMWSVGCIFAEMFRRK 208

>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75 Length = 360

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 100 DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 156
Query: 114 LDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H    T    T    APE+ +     T+  D++S G 
Sbjct: 157 LNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC 216
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 217 ILAEMLSNR 225

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR-TPG 148
           GI + H+    +IVH DIKP+++L+D N   K  DFG+AK  +   T +T T     T  
Sbjct: 123 GIKHAHD---MRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSE--TSLTQTNHVLGTVQ 177
Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             +PE     +  +  D++S G++L+E++
Sbjct: 178 YFSPEQAKGEATDECTDIYSIGIVLYEML 206

>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94 Length = 360

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 100 DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 156
Query: 114 LDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H    T    T    APE+ +     T+  D++S G 
Sbjct: 157 LNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC 216
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 217 ILAEMLSNR 225

>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma Length = 367

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYL-----------LCKKNILGFGQLREIEV 85
           R++      N++G  D  T  +       FYL           L K   LG  +++ +  
Sbjct: 76  RLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVY 135
Query: 86  STSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              KG+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+  + E      T   R
Sbjct: 136 QMLKGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQADSEMXGXVVTRWYR 192
Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            P  E    WM Y  TQ  D++S G ++ E++
Sbjct: 193 AP--EVILNWMRY--TQTVDIWSVGCIMAEMI 220

>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K+ L    L       +KG+ +L     +K +H D+   ++LL E    K  DFGLA+  
Sbjct: 138 KDFLTLEHLIXYSFQVAKGMEFL---ASRKXIHRDLAARNILLSEKNVVKIXDFGLARDI 194
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            ++  ++     R      APE       T + DV+SFG+LL+E+
Sbjct: 195 YKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 239

>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor Length = 364

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 104 DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 160
Query: 114 LDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H    T    T    APE+ +     T+  D++S G 
Sbjct: 161 LNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC 220
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 221 ILAEMLSNR 229

>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2 Length = 364

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 104 DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 160
Query: 114 LDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H    T    T    APE+ +     T+  D++S G 
Sbjct: 161 LNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC 220
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 221 ILAEMLSNR 229

>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Pyrazolopyridazine Derivative Length = 368

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 108 DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 164
Query: 114 LDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H    T    T    APE+ +     T+  D++S G 
Sbjct: 165 LNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC 224
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 225 ILAEMLSNR 233

>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule Inhibitor Length = 368

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 100 DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 156
Query: 114 LDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H    T    T    APE+ +     T+  D++S G 
Sbjct: 157 LNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC 216
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 217 ILAEMLSNR 225

>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol Length = 360

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 100 DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 156
Query: 114 LDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H    T    T    APE+ +     T+  D++S G 
Sbjct: 157 LNTTXDLKIXDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC 216
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 217 ILAEMLSNR 225

>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine Mutation At Position 52 Length = 364

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 104 DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 160
Query: 114 LDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H    T    T    APE+ +     T+  D++S G 
Sbjct: 161 LNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC 220
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 221 ILAEMLSNR 229

>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 102 DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 158
Query: 114 LDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H    T    T    APE+ +     T+  D++S G 
Sbjct: 159 LNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC 218
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 219 ILAEMLSNR 227

>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 105 DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 161
Query: 114 LDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H    T    T    APE+ +     T+  D++S G 
Sbjct: 162 LNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC 221
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 222 ILAEMLSNR 230

>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin 2-Yl]amino}phenyl)acetic Acid Length = 366

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 106 DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 162
Query: 114 LDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H    T    T    APE+ +     T+  D++S G 
Sbjct: 163 LNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC 222
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 223 ILAEMLSNR 231

>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently Bound Length = 357

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 97  DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 153
Query: 114 LDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H    T    T    APE+ +     T+  D++S G 
Sbjct: 154 LNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC 213
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 214 ILAEMLSNR 222

>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived From Mkp3 Length = 364

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 104 DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 160
Query: 114 LDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H    T    T    APE+ +     T+  D++S G 
Sbjct: 161 LNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC 220
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 221 ILAEMLSNR 229

>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e) Length = 358

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 98  DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 154
Query: 114 LDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H    T    T    APE+ +     T+  D++S G 
Sbjct: 155 LNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC 214
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 215 ILAEMLSNR 223

>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length = 358

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 98  DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 154
Query: 114 LDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H    T    T    APE+ +     T+  D++S G 
Sbjct: 155 LNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC 214
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 215 ILAEMLSNR 223

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT--HITSTGRRRT 146
           +G+ +LH  C   IVH D+KPE++L+      K ADFGLA++Y+ +     +  T   R 
Sbjct: 123 RGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALDPVVVTLWYR- 178
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
               APE+ +  +     D++S G +  E+  R+
Sbjct: 179 ----APEVLLQSTYATPVDMWSVGCIFAEMFRRK 208

>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57 Length = 360

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 100 DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 156
Query: 114 LDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H    T    T    APE+ +     T+  D++S G 
Sbjct: 157 LNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC 216
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 217 ILAEMLSNR 225

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           +G+ +LH     ++VH D+KP+++L+  +   K ADFGLA++Y+ +   +  T    T  
Sbjct: 131 RGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQ---MALTSVVVTLW 184
Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
             APE+ +  S     D++S G +  E+  R+
Sbjct: 185 YRAPEVLLQSSYATPVDLWSVGCIFAEMFRRK 216

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 102 IVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRR--RTPGCEAPELWMPYS 159
           ++H D+KP +V LD     K  DFGLA++ N    H TS  +    TP   +PE     S
Sbjct: 137 VLHRDLKPANVFLDGKQNVKLGDFGLARILN----HDTSFAKTFVGTPYYMSPEQMNRMS 192
Query: 160 VTQKCDVFSFGMLLFEVVG 178
             +K D++S G LL+E+  
Sbjct: 193 YNEKSDIWSLGCLLYELCA 211

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 102 IVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRR--RTPGCEAPELWMPYS 159
           ++H D+KP +V LD     K  DFGLA++ N    H TS  +    TP   +PE     S
Sbjct: 137 VLHRDLKPANVFLDGKQNVKLGDFGLARILN----HDTSFAKAFVGTPYYMSPEQMNRMS 192
Query: 160 VTQKCDVFSFGMLLFEVVG 178
             +K D++S G LL+E+  
Sbjct: 193 YNEKSDIWSLGCLLYELCA 211

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L  G L       S+G+ YL E     +VH D+   ++L+ E    K +DFGL++    E
Sbjct: 147 LTMGDLISFAWQISQGMQYLAE---MSLVHRDLAARNILVAEGRKMKISDFGLSRDVYEE 203
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            + +  +  R      A E    +  T + DV+SFG+LL+E+V
Sbjct: 204 DSXVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIV 246

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           +G+ +LH     ++VH D+KP+++L+  +   K ADFGLA++Y+ +   +  T    T  
Sbjct: 131 RGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQ---MALTSVVVTLW 184
Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
             APE+ +  S     D++S G +  E+  R+
Sbjct: 185 YRAPEVLLQSSYATPVDLWSVGCIFAEMFRRK 216

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           +G+ +LH     ++VH D+KP+++L+  +   K ADFGLA++Y+ +   +  T    T  
Sbjct: 131 RGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQ---MALTSVVVTLW 184
Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
             APE+ +  S     D++S G +  E+  R+
Sbjct: 185 YRAPEVLLQSSYATPVDLWSVGCIFAEMFRRK 216

>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580 Length = 360

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKSQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGL +     HT    TG   
Sbjct: 133 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDSELKILDFGLCR-----HTDDEMTGYVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           F  +CK   +   + R +       + Y H   R  +VH D+KPE+VLLD +   K ADF
Sbjct: 99  FDYICKHGRVEEMEARRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADF 155
Query: 126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVV 177
           GL+ + +      TS G   +P   APE+         + D++S G++L+ ++
Sbjct: 156 GLSNMMSDGEFLRTSCG---SPNYAAPEVISGRLYAGPEVDIWSCGVILYALL 205

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 14/171 (8%)
Query: 14  TRTIDKS-LDAMEMDKPIRFTSPQRMIAADNFSNL---VGSEDTETYIKGFLAMGPFYLL 69
            R IDK+ L++  + K  R     +++   N   L   + +E T   +  + + G  +  
Sbjct: 44  VRIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVF-- 101
Query: 70  CKKNILGFGQLREIEVSTS-KGIAYLHEECRQK-IVHYDIKPESVLLDENFFPKAADFGL 127
               ++  G+++E E     + I    + C QK IVH D+K E++LLD +   K ADFG 
Sbjct: 102 --DYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGF 159
Query: 128 AKLYNREHTHITSTGRRRTPGCEAPELWMPYSVT-QKCDVFSFGMLLFEVV 177
           +  +   +   T  G   +P   APEL+        + DV+S G++L+ +V
Sbjct: 160 SNEFTFGNKLDTFCG---SPPYAAPELFQGKKYDGPEVDVWSLGVILYTLV 207

>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With N,n-dimethyl-4-(4- Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide Length = 380

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 120 DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 176
Query: 114 LDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H    T    T    APE+ +     T+  D++S G 
Sbjct: 177 LNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC 236
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 237 ILAEMLSNR 245

>pdb|1NXK|A Chain A, Crystal Structure Of Staurosporine Bound To Map Kap Kinase 2 Length = 400

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHI 138
           EI  S  + I YLH      I H D+KPE++L      N   K  DFG AK      +H 
Sbjct: 165 EIXKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAK---ETTSHN 218
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           + T    TP   APE+  P    + CD +S G++ +
Sbjct: 219 SLTTPCYTPYYVAPEVLGPEKYDKSCDXWSLGVIXY 254

>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase Length = 380

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 93  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 152
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT     G   
Sbjct: 153 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMXGXVA 204
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 205 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 240

>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2- Aminopyridine Inhibitor Length = 301

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 22/163 (13%)
Query: 38  MIAADNFSNLVGSEDTETY-------IKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKG 90
           M+  +N    + S+ T  +       I  +  MG  Y   +   L       I +S + G
Sbjct: 58  MLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASG 117
Query: 91  IAYLHEEC-----RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH--ITSTGR 143
           +A+LH E      +  I H D+K +++L+ +N     AD GLA ++++      + +  R
Sbjct: 118 LAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPR 177
Query: 144 RRTPGCEAPELWMPYSVTQKC-------DVFSFGMLLFEVVGR 179
             T    APE+ +  ++   C       D+++FG++L+EV  R
Sbjct: 178 VGTKRYMAPEV-LDETIQVDCFDSYKRVDIWAFGLVLWEVARR 219

>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex With The Imidazo[1,2-B]pyridazine Inhibitor K00135 Length = 301

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 22/163 (13%)
Query: 38  MIAADNFSNLVGSEDTETY-------IKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKG 90
           M+  +N    + S+ T  +       I  +  MG  Y   +   L       I +S + G
Sbjct: 58  MLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASG 117
Query: 91  IAYLHEEC-----RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH--ITSTGR 143
           +A+LH E      +  I H D+K +++L+ +N     AD GLA ++++      + +  R
Sbjct: 118 LAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPR 177
Query: 144 RRTPGCEAPELWMPYSVTQKC-------DVFSFGMLLFEVVGR 179
             T    APE+ +  ++   C       D+++FG++L+EV  R
Sbjct: 178 VGTKRYMAPEV-LDETIQVDCFDSYKRVDIWAFGLVLWEVARR 219

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 96  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 155
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT     G   
Sbjct: 156 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMXGYVA 207
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 208 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 243

>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120 Length = 316

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K+ L    L       +KG+ +L     +K +H D+   ++LL E    K  DFGLA+  
Sbjct: 142 KDFLTLEHLIXYSFQVAKGMEFL---ASRKXIHRDLAARNILLSEKNVVKICDFGLARDI 198
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            ++   +     R      APE       T + DV+SFG+LL+E+
Sbjct: 199 XKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 243

>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With Compound A Length = 356

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K+ L    L       +KG+ +L     +K +H D+   ++LL E    K  DFGLA+  
Sbjct: 185 KDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDI 241
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            ++  ++     R      APE       T + DV+SFG+LL+E+
Sbjct: 242 YKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 286

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT     G   
Sbjct: 133 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMAGFVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT     G   
Sbjct: 133 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMAGFVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            + YLH   R  IVH D+KPE++L    DE      +DFGL+K+  +     T+ G   T
Sbjct: 132 AVYYLH---RMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACG---T 185
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           PG  APE+      ++  D +S G++ +
Sbjct: 186 PGYVAPEVLAQKPYSKAVDCWSIGVIAY 213

>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A Novel Pyrrolopyrimidine Inhibitor Length = 359

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K+ L    L       +KG+ +L     +K +H D+   ++LL E    K  DFGLA+  
Sbjct: 187 KDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDI 243
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            ++  ++     R      APE       T + DV+SFG+LL+E+
Sbjct: 244 YKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 288

>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 104 DVYIVQDLMETDLYKLLKCQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 160
Query: 114 LDENFFPKAADFGLAKLYNREHTHIT-STGRRRTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H    T    T    APE+ +     T+  D++S G 
Sbjct: 161 LNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC 220
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 221 ILAEMLSNR 229

>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 2-Anilino-5-Aryl-Oxazole Inhibitor Length = 366

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K+ L    L       +KG+ +L     +K +H D+   ++LL E    K  DFGLA+  
Sbjct: 192 KDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDI 248
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            ++  ++     R      APE       T + DV+SFG+LL+E+
Sbjct: 249 YKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 293

>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 330

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 22/163 (13%)
Query: 38  MIAADNFSNLVGSEDTETY-------IKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKG 90
           M+  +N    + S+ T  +       I  +  MG  Y   +   L       I +S + G
Sbjct: 87  MLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASG 146
Query: 91  IAYLHEEC-----RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH--ITSTGR 143
           +A+LH E      +  I H D+K +++L+ +N     AD GLA ++++      + +  R
Sbjct: 147 LAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPR 206
Query: 144 RRTPGCEAPELWMPYSVTQKC-------DVFSFGMLLFEVVGR 179
             T    APE+ +  ++   C       D+++FG++L+EV  R
Sbjct: 207 VGTKRYMAPEV-LDETIQVDCFDSYKRVDIWAFGLVLWEVARR 248

>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Back Pocket Binder Length = 368

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K+ L    L       +KG+ +L     +K +H D+   ++LL E    K  DFGLA+  
Sbjct: 194 KDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDI 250
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            ++  ++     R      APE       T + DV+SFG+LL+E+
Sbjct: 251 YKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 295

>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2 With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 318

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K+ L    L       +KG+ +L     +K +H D+   ++LL E    K  DFGLA+  
Sbjct: 144 KDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDI 200
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            ++  ++     R      APE       T + DV+SFG+LL+E+
Sbjct: 201 YKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 245

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 64  GPF--YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPK 121
           GP   +L+ K+  +    + E+    S G+ YL E   +  VH D+   +VLL    + K
Sbjct: 94  GPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAK 150
Query: 122 AADFGLAKLYNREHTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            +DFGL+K    + ++ T+    + P    APE       + + DV+S+G+ ++E +
Sbjct: 151 ISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEAL 207

>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridyl-Pyrimidine Benzimidazole Inhibitor Length = 314

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K+ L    L       +KG+ +L     +K +H D+   ++LL E    K  DFGLA+  
Sbjct: 133 KDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDI 189
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            ++  ++     R      APE       T + DV+SFG+LL+E+
Sbjct: 190 YKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 234

>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With 10z-Hymenialdisine Length = 339

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 27/118 (22%)
Query: 77  FGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL-----DENFFPK---------- 121
              +R++     K + +LH     K+ H D+KPE++L       E + PK          
Sbjct: 117 LDHIRKMAYQICKSVNFLHS---NKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLIN 173
Query: 122 ----AADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFE 175
                 DFG A   +  H+ + ST   R     APE+ +    +Q CDV+S G +L E
Sbjct: 174 PDIKVVDFGSATYDDEHHSTLVSTRHYR-----APEVILALGWSQPCDVWSIGCILIE 226

>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyrazolone Inhibitor Length = 314

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K+ L    L       +KG+ +L     +K +H D+   ++LL E    K  DFGLA+  
Sbjct: 133 KDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDI 189
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            ++  ++     R      APE       T + DV+SFG+LL+E+
Sbjct: 190 YKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 234

>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase Domains) In Complex With Axitinib (Ag-013736) (N-Methyl-2-( 3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)- Benzamide) Length = 353

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K+ L    L       +KG+ +L     +K +H D+   ++LL E    K  DFGLA+  
Sbjct: 179 KDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDI 235
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            ++  ++     R      APE       T + DV+SFG+LL+E+
Sbjct: 236 YKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 280

>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy) Quinolin-4-Yloxy)benzofuran-3-Carboxamide) Length = 316

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K+ L    L       +KG+ +L     +K +H D+   ++LL E    K  DFGLA+  
Sbjct: 142 KDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDI 198
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            ++  ++     R      APE       T + DV+SFG+LL+E+
Sbjct: 199 YKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 243

>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K+ L    L       +KG+ +L     +K +H D+   ++LL E    K  DFGLA+  
Sbjct: 138 KDFLTLEHLICYSFQVAKGMEFL---ASRKXIHRDLAARNILLSEKNVVKICDFGLARDI 194
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            ++  ++     R      APE       T + DV+SFG+LL+E+
Sbjct: 195 YKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 239

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           F  +CK   +   + R +       + Y H   R  +VH D+KPE+VLLD +   K ADF
Sbjct: 99  FDYICKHGRVEEMEARRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADF 155
Query: 126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQK------CDVFSFGMLLFEVV 177
           GL+ +         S G      C +P    P  ++ +       D++S G++L+ ++
Sbjct: 156 GLSNM--------MSDGEFLRDSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALL 205

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 16/105 (15%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY--NREH 135
           G LR I    + G+ YL        VH D+   ++L++ N   K +DFGL+++   + E 
Sbjct: 151 GMLRGI----AAGMKYL---ANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEA 203
Query: 136 THITSTGR---RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T+ TS G+   R T    APE       T   DV+SFG++++EV+
Sbjct: 204 TYTTSGGKIPIRWT----APEAISYRKFTSASDVWSFGIVMWEVM 244

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT 139
           L       ++G+A+L     +  +H D+   +VLL      K  DFGLA+    +  +I 
Sbjct: 162 LLHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIV 218
Query: 140 STGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               R      APE       T + DV+S+G+LL+E+
Sbjct: 219 KGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEI 255

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 69  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 128
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT     G   
Sbjct: 129 QILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMAGFVA 180
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 181 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 216

>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase Domain Of Csf-1r Length = 324

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT 139
           L       ++G+A+L     +  +H D+   +VLL      K  DFGLA+    +  +I 
Sbjct: 160 LLHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIV 216
Query: 140 STGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               R      APE       T + DV+S+G+LL+E+
Sbjct: 217 KGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEI 253

>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 104 DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 160
Query: 114 LDENFFPKAADFGLAKLYNREHTHITSTGRR-RTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H         T    APE+ +     T+  D++S G 
Sbjct: 161 LNTTCDLKICDFGLARVADPDHDHTGFLXEXVATRWYRAPEIMLNSKGYTKSIDIWSVGC 220
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 221 ILAEMLSNR 229

>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Query: 54  ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVL 113
           + YI   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++L
Sbjct: 105 DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLL 161
Query: 114 LDENFFPKAADFGLAKLYNREHTHITSTGRR-RTPGCEAPELWM-PYSVTQKCDVFSFGM 171
           L+     K  DFGLA++ + +H H         T    APE+ +     T+  D++S G 
Sbjct: 162 LNTTCDLKICDFGLARVADPDHDHTGFLXEXVATRWYRAPEIMLNSKGYTKSIDIWSVGC 221
Query: 172 LLFEVVGRR 180
           +L E++  R
Sbjct: 222 ILAEMLSNR 230

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT 139
           L       ++G+A+L     +  +H D+   +VLL      K  DFGLA+    +  +I 
Sbjct: 154 LLHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIV 210
Query: 140 STGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               R      APE       T + DV+S+G+LL+E+
Sbjct: 211 KGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEI 247

>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An Arylamide Inhibitor Length = 333

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT 139
           L       ++G+A+L     +  +H D+   +VLL      K  DFGLA+    +  +I 
Sbjct: 166 LLHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIV 222
Query: 140 STGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               R      APE       T + DV+S+G+LL+E+
Sbjct: 223 KGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEI 259

>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A Pyrimidinopyridone Inhibitor Length = 333

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT 139
           L       ++G+A+L     +  +H D+   +VLL      K  DFGLA+    +  +I 
Sbjct: 166 LLHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIV 222
Query: 140 STGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               R      APE       T + DV+S+G+LL+E+
Sbjct: 223 KGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEI 259

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R +TH   T   R
Sbjct: 114 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 170
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 171 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 201

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R +TH   T   R
Sbjct: 113 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 169
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 170 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 200

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R +TH   T   R
Sbjct: 114 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 170
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 171 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 201

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R +TH   T   R
Sbjct: 113 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 169
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 170 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 200

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R +TH   T   R
Sbjct: 114 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 170
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 171 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 201

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           +++LG   L +  +   + + YL        VH D+   +VL+ E+   K +DFGL K  
Sbjct: 102 RSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTK-- 156
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
             E +    TG+       APE     + + K DV+SFG+LL+E+
Sbjct: 157 --EASSTQDTGKLPVK-WTAPEALREAAFSTKSDVWSFGILLWEI 198

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R +TH   T   R
Sbjct: 115 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 171
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 172 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 202

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R +TH   T   R
Sbjct: 113 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 169
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 170 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 200

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK---LYNREHTHITSTGRRR 145
           +G+ Y+H     +++H D+KP ++L++EN   K  DFG+A+       EH +   T    
Sbjct: 169 RGLKYMHS---AQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFM-TEYVA 224
Query: 146 TPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRR 181
           T    APEL +  +  TQ  D++S G +  E++ RR+
Sbjct: 225 TRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQ 261

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 14/92 (15%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           KGI YLH    QKI+H DIKP ++L+ E+   K ADFG++  +      +++T    TP 
Sbjct: 148 KGIEYLH---YQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNT--VGTPA 202
Query: 149 CEAPELWMPYSVTQKC------DVFSFGMLLF 174
             APE     S T+K       DV++ G+ L+
Sbjct: 203 FMAPE---SLSETRKIFSGKALDVWAMGVTLY 231

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R +TH   T   R
Sbjct: 113 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 169
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 170 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 200

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK---LYNREHTHITSTGRRR 145
           +G+ Y+H     +++H D+KP ++L++EN   K  DFG+A+       EH +   T    
Sbjct: 170 RGLKYMHS---AQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFM-TEYVA 225
Query: 146 TPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRR 181
           T    APEL +  +  TQ  D++S G +  E++ RR+
Sbjct: 226 TRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQ 262

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R +TH   T   R
Sbjct: 121 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 177
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 178 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 208

>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone Inhibitor Length = 335

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT 139
           L       ++G+A+L     +  +H D+   +VLL      K  DFGLA+    +  +I 
Sbjct: 168 LLHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIV 224
Query: 140 STGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               R      APE       T + DV+S+G+LL+E+
Sbjct: 225 KGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEI 261

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 16/109 (14%)
Query: 76  GFGQLREI--EVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR 133
           GF + R +        G+  LH   R++IV+ D+KPE++LLD++   + +D GLA     
Sbjct: 282 GFPEARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLA----- 333
Query: 134 EHTHI----TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
              H+    T  GR  T G  APE+      T   D ++ G LL+E++ 
Sbjct: 334 --VHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIA 380

>pdb|2EU9|A Chain A, Crystal Structure Of Clk3 Length = 355

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 27/116 (23%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFP------------------ 120
            +R +       + +LHE    ++ H D+KPE++L   + F                   
Sbjct: 124 HVRHMAYQLCHALRFLHE---NQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTS 180
Query: 121 -KAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFE 175
            + ADFG A   +  HT I +T   R      PE+ +     Q CDV+S G +LFE
Sbjct: 181 IRVADFGSATFDHEHHTTIVATRHYR-----PPEVILELGWAQPCDVWSIGCILFE 231

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 24/120 (20%)
Query: 64  GPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAA 123
           GP  L C + +        I    + G+AYL E   +K VH D+   + L+ EN   K A
Sbjct: 167 GPPPLSCAEQLC-------IARQVAAGMAYLSE---RKFVHRDLATRNCLVGENMVVKIA 216
Query: 124 DFGLAKLYNREHTHITSTGRRRTPGCEA-PELWMP-----YS-VTQKCDVFSFGMLLFEV 176
           DFGL++       +I S    +  G +A P  WMP     Y+  T + DV+++G++L+E+
Sbjct: 217 DFGLSR-------NIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEI 269

>pdb|2EXE|A Chain A, Crystal Structure Of The Phosphorylated Clk3 Length = 357

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 27/116 (23%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFP------------------ 120
            +R +       + +LHE    ++ H D+KPE++L   + F                   
Sbjct: 133 HVRHMAYQLCHALRFLHE---NQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTS 189
Query: 121 -KAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFE 175
            + ADFG A   +  HT I +T   R      PE+ +     Q CDV+S G +LFE
Sbjct: 190 IRVADFGSATFDHEHHTTIVATRHYR-----PPEVILELGWAQPCDVWSIGCILFE 240

>pdb|2WU6|A Chain A, Crystal Structure Of The Human Clk3 In Complex With Dki Length = 381

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 27/116 (23%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFP------------------ 120
            +R +       + +LHE    ++ H D+KPE++L   + F                   
Sbjct: 156 HVRHMAYQLCHALRFLHE---NQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTS 212
Query: 121 -KAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFE 175
            + ADFG A   +  HT I +T   R      PE+ +     Q CDV+S G +LFE
Sbjct: 213 IRVADFGSATFDHEHHTTIVATRHYR-----PPEVILELGWAQPCDVWSIGCILFE 263

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Query: 15  RTIDKS-LDAMEMDKPIRFTSPQRMIAADNFSNL---VGSEDTETYIKGFLAMGPFYLLC 70
           + IDK+ L+   + K  R     +++   N   L   + +E T   I  + + G  +   
Sbjct: 43  KIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVF--- 99
Query: 71  KKNILGFGQLREIEV-STSKGIAYLHEECRQK-IVHYDIKPESVLLDENFFPKAADFGLA 128
              ++  G+++E E  S  + I    + C QK IVH D+K E++LLD +   K ADFG +
Sbjct: 100 -DYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFS 158
Query: 129 KLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQ-KCDVFSFGMLLFEVV 177
             +       T  G   +P   APEL+        + DV+S G++L+ +V
Sbjct: 159 NEFTVGGKLDTFCG---SPPYAAPELFQGKKYDGPEVDVWSLGVILYTLV 205

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 16/109 (14%)
Query: 76  GFGQLREI--EVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR 133
           GF + R +        G+  LH   R++IV+ D+KPE++LLD++   + +D GLA     
Sbjct: 282 GFPEARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLA----- 333
Query: 134 EHTHI----TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
              H+    T  GR  T G  APE+      T   D ++ G LL+E++ 
Sbjct: 334 --VHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIA 380

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R +TH   T   R
Sbjct: 118 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 174
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 175 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 205

>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  D GLA+     HT    TG   
Sbjct: 133 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDAGLAR-----HTDDEMTGYVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif Mutants In Response To Inhibitor Binding Length = 360

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K   FGLA+     HT    TG   
Sbjct: 133 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILGFGLAR-----HTDDEMTGYVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase Length = 353

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 60  FLAMGPFYLLCKKNILGFG----QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD 115
           F  + PF     + I+G      +++ +     KG+ Y+H      +VH D+KP ++ ++
Sbjct: 104 FYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVN 160
Query: 116 ENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL---WMPYSVTQKCDVFSFGML 172
           E+   K  DFGLA+     H     TG   T    APE+   WM Y+  Q  D++S G +
Sbjct: 161 EDCELKILDFGLAR-----HADAEMTGYVVTRWYRAPEVILSWMHYN--QTVDIWSVGCI 213
Query: 173 LFEVV 177
           + E++
Sbjct: 214 MAEML 218

>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Nicotinamide Inhibitor Length = 314

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K+ L    L       +KG+ +L     +K +H D+   ++LL E    K  DFGLA+  
Sbjct: 133 KDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDI 189
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            ++   +     R      APE       T + DV+SFG+LL+E+
Sbjct: 190 XKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 234

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 102 IVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVT 161
           ++H D+KP +V LD     K  DFGLA++ N  H    +     TP   +PE     S  
Sbjct: 137 VLHRDLKPANVFLDGKQNVKLGDFGLARILN--HDEDFAKEFVGTPYYMSPEQMNRMSYN 194
Query: 162 QKCDVFSFGMLLFEVVG 178
           +K D++S G LL+E+  
Sbjct: 195 EKSDIWSLGCLLYELCA 211

>pdb|1RJB|A Chain A, Crystal Structure Of Flt3 Length = 344

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 73  NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN 132
           N+L F  L       +KG+ +L     +  VH D+   +VL+      K  DFGLA+   
Sbjct: 167 NVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIM 223
Query: 133 REHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            +  ++     R      APE       T K DV+S+G+LL+E+
Sbjct: 224 SDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEI 267

>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridinyl-Triazine Inhibitor Length = 314

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K+ L    L       +KG+ +L     +K +H D+   ++LL E    K  DFGLA+  
Sbjct: 133 KDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDI 189
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            ++   +     R      APE       T + DV+SFG+LL+E+
Sbjct: 190 XKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 234

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 73  NILGFGQLREIEVSTS-----KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL 127
           ++L  G L E  ++T      KG+ YLH E +   +H DIK  +VLL E    K ADFG+
Sbjct: 106 DLLKPGPLEETYIATILREILKGLDYLHSERK---IHRDIKAANVLLSEQGDVKLADFGV 162
Query: 128 AKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           A       T I       TP   APE+    +   K D++S G+   E+ 
Sbjct: 163 AG--QLTDTQIKRNXFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELA 210

>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea Inhibitor Length = 316

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K+ L    L       +KG+ +L     +K +H D+   ++LL E    K  DFGLA+  
Sbjct: 142 KDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDI 198
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            ++   +     R      APE       T + DV+SFG+LL+E+
Sbjct: 199 XKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 243

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 16/94 (17%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRRT 146
           GIAY H+   ++++H D+KP+++L++     K ADFGLA+ +    R++TH   T   R 
Sbjct: 112 GIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEVVTLWYR- 167
Query: 147 PGCEAPELWM---PYSVTQKCDVFSFGMLLFEVV 177
               AP++ M    YS T   D++S G +  E+V
Sbjct: 168 ----APDVLMGSKKYSTT--IDIWSVGCIFAEMV 195

>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]pyrimidine Length = 316

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K+ L    L       +KG+ +L     +K +H D+   ++LL E    K  DFGLA+  
Sbjct: 142 KDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDI 198
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            ++   +     R      APE       T + DV+SFG+LL+E+
Sbjct: 199 XKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 243

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 16/94 (17%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRRT 146
           GIAY H+   ++++H D+KP+++L++     K ADFGLA+ +    R++TH   T   R 
Sbjct: 112 GIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEVVTLWYR- 167
Query: 147 PGCEAPELWM---PYSVTQKCDVFSFGMLLFEVV 177
               AP++ M    YS T   D++S G +  E+V
Sbjct: 168 ----APDVLMGSKKYSTT--IDIWSVGCIFAEMV 195

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 57  IKGFLAMGPF--YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL 114
           I  FL  G    YL   KN +   Q  +  V   KG+ YL     ++ VH D+   +VL+
Sbjct: 103 IMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLV 159
Query: 115 DENFFPKAADFGLAKLYNREHTHITSTGRRRTPG-CEAPELWMPYSVTQKCDVFSFGMLL 173
           +     K  DFGL K    +    T    R +P    APE  M        DV+SFG+ L
Sbjct: 160 ESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTL 219
Query: 174 FEVV 177
            E++
Sbjct: 220 HELL 223

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 32/129 (24%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLL-----DENFFPKAADFGLAKLYNREHTHITSTGRR 144
           GI Y+H   + KIVH D+KPE++LL     D N   +  DFGL+       TH  ++ + 
Sbjct: 138 GITYMH---KNKIVHRDLKPENLLLESKSKDANI--RIIDFGLS-------THFEASKKM 185
Query: 145 R----TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV--------GRRRNLEKEISEGQE 192
           +    T    APE+ +  +  +KCDV+S G++L+ ++            ++ K++ +G+ 
Sbjct: 186 KDKIGTAYYIAPEV-LHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKY 244
Query: 193 WF--PKWGR 199
            F  P+W +
Sbjct: 245 TFELPQWKK 253

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 14/171 (8%)
Query: 14  TRTIDKS-LDAMEMDKPIRFTSPQRMIAADNFSNL---VGSEDTETYIKGFLAMGPFYLL 69
            + IDK+ L++  + K  R     +++   N   L   + +E T   +  + + G  +  
Sbjct: 44  VKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVF-- 101
Query: 70  CKKNILGFGQLREIEVSTS-KGIAYLHEECRQK-IVHYDIKPESVLLDENFFPKAADFGL 127
               ++  G+++E E     + I    + C QK IVH D+K E++LLD +   K ADFG 
Sbjct: 102 --DYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGF 159
Query: 128 AKLYNREHTHITSTGRRRTPGCEAPELWMPYSVT-QKCDVFSFGMLLFEVV 177
           +  +   +   T  G   +P   APEL+        + DV+S G++L+ +V
Sbjct: 160 SNEFTFGNKLDTFCG---SPPYAAPELFQGKKYDGPEVDVWSLGVILYTLV 207

>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In Complex With P38 Map Kinase Length = 360

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DF LA+     HT    TG   
Sbjct: 133 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFYLAR-----HTDDEMTGYVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 57  IKGFLAMGPF--YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL 114
           I  FL  G    YL   KN +   Q  +  V   KG+ YL     ++ VH D+   +VL+
Sbjct: 91  IMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLV 147
Query: 115 DENFFPKAADFGLAKLYNREHTHITSTGRRRTPG-CEAPELWMPYSVTQKCDVFSFGMLL 173
           +     K  DFGL K    +    T    R +P    APE  M        DV+SFG+ L
Sbjct: 148 ESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTL 207
Query: 174 FEVV 177
            E++
Sbjct: 208 HELL 211

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 14/171 (8%)
Query: 14  TRTIDKS-LDAMEMDKPIRFTSPQRMIAADNFSNL---VGSEDTETYIKGFLAMGPFYLL 69
            + IDK+ L++  + K  R     +++   N   L   + +E T   +  + + G  +  
Sbjct: 44  VKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVF-- 101
Query: 70  CKKNILGFGQLREIEVSTS-KGIAYLHEECRQK-IVHYDIKPESVLLDENFFPKAADFGL 127
               ++  G+++E E     + I    + C QK IVH D+K E++LLD +   K ADFG 
Sbjct: 102 --DYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGF 159
Query: 128 AKLYNREHTHITSTGRRRTPGCEAPELWMPYSVT-QKCDVFSFGMLLFEVV 177
           +  +   +   T  G   +P   APEL+        + DV+S G++L+ +V
Sbjct: 160 SNEFTFGNKLDTFCG---SPPYAAPELFQGKKYDGPEVDVWSLGVILYTLV 207

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHT 136
           G LR +      G+ YL +      VH D+   +VL+D N   K +DFGL++ L +    
Sbjct: 155 GMLRGV----GAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDA 207
Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
             T+TG +      APE     + +   DV+SFG++++EV+ 
Sbjct: 208 AYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLA 249

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHT 136
           G LR +      G+ YL +      VH D+   +VL+D N   K +DFGL++ L +    
Sbjct: 155 GMLRGV----GAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDA 207
Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
             T+TG +      APE     + +   DV+SFG++++EV+ 
Sbjct: 208 AXTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLA 249

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 67  YLLCKKNILGF--GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD---ENFFPK 121
           YL   +N  G   G +R +    S  + YLHE    +I+H D+KPE+++L    +    K
Sbjct: 108 YLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHK 164
Query: 122 AADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             D G AK  ++        G   T    APEL      T   D +SFG L FE +
Sbjct: 165 IIDLGYAKELDQGELCTEFVG---TLQYLAPELLEQKKYTVTVDYWSFGTLAFECI 217

>pdb|3MY0|A Chain A, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound To Ldn- 193189 Length = 305

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 24/173 (13%)
Query: 38  MIAADNFSNLVGSEDTET-------YIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKG 90
           ++  DN    + S+ T          I  +   G  Y   ++  L       + VS + G
Sbjct: 58  LLRHDNILGFIASDMTSRNSSTQLWLITHYHEHGSLYDFLQRQTLEPHLALRLAVSAACG 117
Query: 91  IAYLHEEC-----RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR--EHTHITSTGR 143
           +A+LH E      +  I H D K  +VL+  N     AD GLA ++++  ++  I +  R
Sbjct: 118 LAHLHVEIFGTQGKPAIAHRDFKSRNVLVKSNLQCCIADLGLAVMHSQGSDYLDIGNNPR 177
Query: 144 RRTPGCEAPELWMPYSVTQKC-------DVFSFGMLLFEVVGRRRNLEKEISE 189
             T    APE+ +   +   C       D+++FG++L+E+   RR +   I E
Sbjct: 178 VGTKRYMAPEV-LDEQIRTDCFESYKWTDIWAFGLVLWEIA--RRTIVNGIVE 227

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 67  YLLCKKNILGF--GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD---ENFFPK 121
           YL   +N  G   G +R +    S  + YLHE    +I+H D+KPE+++L    +    K
Sbjct: 109 YLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHK 165
Query: 122 AADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             D G AK  ++        G   T    APEL      T   D +SFG L FE +
Sbjct: 166 IIDLGYAKELDQGELCTEFVG---TLQYLAPELLEQKKYTVTVDYWSFGTLAFECI 218

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVL---LDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            + YLH+     IVH D+KPE++L   LDE+     +DFGL+K+ +      T+ G   T
Sbjct: 128 AVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACG---T 181
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           PG  APE+      ++  D +S G++ +
Sbjct: 182 PGYVAPEVLAQKPYSKAVDCWSIGVIAY 209

>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287d, T291d) Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 16/106 (15%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT 139
           L ++ V+  K + YL E  +  ++H D+KP ++LLDE    K  DFG++         + 
Sbjct: 126 LGKMTVAIVKALYYLKE--KHGVIHRDVKPSNILLDERGQIKLCDFGISGRL------VD 177
Query: 140 STGRRRTPGCE---APELWMPYSVTQ-----KCDVFSFGMLLFEVV 177
              + R+ GC    APE   P   T+     + DV+S G+ L E+ 
Sbjct: 178 DKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELA 223

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVL---LDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            + YLH+     IVH D+KPE++L   LDE+     +DFGL+K+ +      T+ G   T
Sbjct: 128 AVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACG---T 181
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           PG  APE+      ++  D +S G++ +
Sbjct: 182 PGYVAPEVLAQKPYSKAVDCWSIGVIAY 209

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 16/94 (17%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRRT 146
           GIAY H+   ++++H D+KP+++L++     K ADFGLA+ +    R++TH   T   R 
Sbjct: 112 GIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYR- 167
Query: 147 PGCEAPELWM---PYSVTQKCDVFSFGMLLFEVV 177
               AP++ M    YS T   D++S G +  E+V
Sbjct: 168 ----APDVLMGSKKYSTT--IDIWSVGCIFAEMV 195

>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  D GLA+     HT    TG   
Sbjct: 133 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDRGLAR-----HTDDEMTGYVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 102 IVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHTHITSTGRRRTPGCEAPELWMPYSV 160
           I++ D+KPE++LLDE    K  DFGL+K   + E    +  G   T    APE+      
Sbjct: 147 IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCG---TVEYMAPEVVNRRGH 203
Query: 161 TQKCDVFSFGMLLFEVV 177
           TQ  D +SFG+L+FE++
Sbjct: 204 TQSADWWSFGVLMFEML 220

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 102 IVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHTHITSTGRRRTPGCEAPELWMPYSV 160
           I++ D+KPE++LLDE    K  DFGL+K   + E    +  G   T    APE+      
Sbjct: 148 IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCG---TVEYMAPEVVNRRGH 204
Query: 161 TQKCDVFSFGMLLFEVV 177
           TQ  D +SFG+L+FE++
Sbjct: 205 TQSADWWSFGVLMFEML 221

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 74  ILGFGQLREIEVSTS-KGIAYLHEECRQK-IVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           ++  G+++E E     + I    + C QK IVH D+K E++LLD +   K ADFG +  +
Sbjct: 105 LVAHGRMKEKEARAKFRQIVSAVQYCHQKYIVHRDLKAENLLLDGDMNIKIADFGFSNEF 164
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVT-QKCDVFSFGMLLFEVV 177
              +   T  G   +P   APEL+        + DV+S G++L+ +V
Sbjct: 165 TVGNKLDTFCG---SPPYAAPELFQGKKYDGPEVDVWSLGVILYTLV 208

>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 24/158 (15%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  D GLA+     HT    TG   
Sbjct: 133 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDGGLAR-----HTDDEMTGYVA 184
Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+   WM Y+  Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNWMHYN--QTVDIWSVGCIMAELLTGR 220

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVL---LDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            + YLH+     IVH D+KPE++L   LDE+     +DFGL+K+ +      T+ G   T
Sbjct: 128 AVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACG---T 181
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           PG  APE+      ++  D +S G++ +
Sbjct: 182 PGYVAPEVLAQKPYSKAVDCWSIGVIAY 209

>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr) Kinase Domain Length = 316

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K+ L    L       +KG+ +L     +K +H D+   ++LL E    K  DFGLA+  
Sbjct: 142 KDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDI 198
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
            ++   +     R      APE       T + DV+SFG+LL+E+
Sbjct: 199 YKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 243

>pdb|4EXU|A Chain A, Mapk13, Inactive Form Length = 371

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 60  FLAMGPFYLLCKKNILGFG----QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD 115
           F  + PF     + I+G      +++ +     KG+ Y+H      +VH D+KP ++ ++
Sbjct: 122 FYLVMPFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVN 178
Query: 116 ENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFE 175
           E+   K  DFGLA+  + E T    T   R P  E    WM Y+  Q  D++S G ++ E
Sbjct: 179 EDCELKILDFGLARHADAEMTGYVVTRWYRAP--EVILSWMHYN--QTVDIWSVGCIMAE 234
Query: 176 VV 177
           ++
Sbjct: 235 ML 236

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 32/129 (24%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLL-----DENFFPKAADFGLAKLYNREHTHITSTGRR 144
           GI Y+H   + KIVH D+KPE++LL     D N   +  DFGL+       TH  ++ + 
Sbjct: 161 GITYMH---KNKIVHRDLKPENLLLESKSKDANI--RIIDFGLS-------THFEASKKM 208
Query: 145 R----TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV--------GRRRNLEKEISEGQE 192
           +    T    APE+ +  +  +KCDV+S G++L+ ++            ++ K++ +G+ 
Sbjct: 209 KDKIGTAYYIAPEV-LHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKY 267
Query: 193 WF--PKWGR 199
            F  P+W +
Sbjct: 268 TFELPQWKK 276

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KPE++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 115 QGLAFCHS---HRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 171
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 172 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 202

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVL---LDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            + YLH+     IVH D+KPE++L   LDE+     +DFGL+K+ +      T+ G   T
Sbjct: 128 AVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACG---T 181
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           PG  APE+      ++  D +S G++ +
Sbjct: 182 PGYVAPEVLAQKPYSKAVDCWSIGVIAY 209

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           +++LG   L +  +   + + YL        VH D+   +VL+ E+   K +DFGL K  
Sbjct: 96  RSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTK-- 150
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
             E +    TG+       APE       + K DV+SFG+LL+E+
Sbjct: 151 --EASSTQDTGKLPVK-WTAPEALREKKFSTKSDVWSFGILLWEI 192

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KPE++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 117 QGLAFCHS---HRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 173
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 174 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 204

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 32/129 (24%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLL-----DENFFPKAADFGLAKLYNREHTHITSTGRR 144
           GI Y+H   + KIVH D+KPE++LL     D N   +  DFGL+       TH  ++ + 
Sbjct: 162 GITYMH---KNKIVHRDLKPENLLLESKSKDANI--RIIDFGLS-------THFEASKKM 209
Query: 145 R----TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV--------GRRRNLEKEISEGQE 192
           +    T    APE+ +  +  +KCDV+S G++L+ ++            ++ K++ +G+ 
Sbjct: 210 KDKIGTAYYIAPEV-LHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKY 268
Query: 193 WF--PKWGR 199
            F  P+W +
Sbjct: 269 TFELPQWKK 277

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KPE++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 115 QGLAFCHS---HRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 171
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 172 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 202

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KPE++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 114 QGLAFCHS---HRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 170
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 171 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 201

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           +++LG   L +  +   + + YL        VH D+   +VL+ E+   K +DFGL K  
Sbjct: 111 RSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTK-- 165
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
             E +    TG+       APE       + K DV+SFG+LL+E+
Sbjct: 166 --EASSTQDTGKLPVK-WTAPEALREKKFSTKSDVWSFGILLWEI 207

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KPE++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 116 QGLAFCHS---HRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 172
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 173 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 203

>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With N-(4-chlorophenyl)-2- ((pyridin-4-ylmethyl)amino)benzamide Length = 360

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            ++G+ +L     +K +H D+   ++LL EN   K  DFGLA+   +   ++     R  
Sbjct: 208 VARGMEFLSS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKNPDYVRKGDTRLP 264
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               APE       + K DV+S+G+LL+E+
Sbjct: 265 LKWMAPESIFDKIYSTKSDVWSYGVLLWEI 294

>pdb|1HOW|A Chain A, The X-Ray Crystal Structure Of Sky1p, An Sr Protein Kinase In Yeast Length = 373

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD-----ENFFP-KAADFGLAKLYNR 133
           +++I      G+ Y+H  C   I+H DIKPE+VL++     EN    K AD G A  Y+ 
Sbjct: 133 VKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDE 190
Query: 134 EHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            +T+   T   R+     PE+ +        D++S   L+FE++
Sbjct: 191 HYTNSIQTREYRS-----PEVLLGAPWGCGADIWSTACLIFELI 229

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 32/129 (24%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLL-----DENFFPKAADFGLAKLYNREHTHITSTGRR 144
           GI Y+H   + KIVH D+KPE++LL     D N   +  DFGL+       TH  ++ + 
Sbjct: 144 GITYMH---KNKIVHRDLKPENLLLESKSKDANI--RIIDFGLS-------THFEASKKM 191
Query: 145 R----TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV--------GRRRNLEKEISEGQE 192
           +    T    APE+ +  +  +KCDV+S G++L+ ++            ++ K++ +G+ 
Sbjct: 192 KDKIGTAYYIAPEV-LHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKY 250
Query: 193 WF--PKWGR 199
            F  P+W +
Sbjct: 251 TFELPQWKK 259

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 102 IVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHTHITSTGRRRTPGCEAPELWMPYSV 160
           I++ D+KPE++LLDE    K  DFGL+K   + E    +  G   T    APE+      
Sbjct: 147 IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCG---TVEYMAPEVVNRRGH 203
Query: 161 TQKCDVFSFGMLLFEVV 177
           TQ  D +SFG+L+FE++
Sbjct: 204 TQSADWWSFGVLMFEML 220

>pdb|1Q8Y|A Chain A, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With Bound Adp Length = 373

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD-----ENFFP-KAADFGLAKLYNR 133
           +++I      G+ Y+H  C   I+H DIKPE+VL++     EN    K AD G A  Y+ 
Sbjct: 133 VKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDE 190
Query: 134 EHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            +T+   T   R+     PE+ +        D++S   L+FE++
Sbjct: 191 HYTNSIQTREYRS-----PEVLLGAPWGCGADIWSTACLIFELI 229

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHT 136
           G LR I    S G+ YL +      VH D+   ++L++ N   K +DFGL++ L +    
Sbjct: 128 GMLRGI----SAGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 180
Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             T+ G +      APE       T   DV+S+G++++EVV
Sbjct: 181 AYTTRGGKIPIRWTAPEAIAFRKFTSASDVWSYGIVMWEVV 221

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 17/161 (10%)
Query: 30  IRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREI-----E 84
           +RF    +  AA N   +V   DT    +     GP   +  + + G   LR+I      
Sbjct: 57  LRFRREAQNAAALNHPAIVAVYDTG---EAETPAGPLPYIVMEYVDGV-TLRDIVHTEGP 112
Query: 85  VSTSKGIAYLHEECR-------QKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH 137
           ++  + I  + + C+         I+H D+KP ++++      K  DFG+A+        
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNS 172
Query: 138 ITSTGRR-RTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           +T T     T    +PE     SV  + DV+S G +L+EV+
Sbjct: 173 VTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVL 213

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           +++LG   L +  +   + + YL        VH D+   +VL+ E+   K +DFGL K  
Sbjct: 283 RSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTK-- 337
Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
             E +    TG+       APE       + K DV+SFG+LL+E+
Sbjct: 338 --EASSTQDTGKLPVK-WTAPEALREKKFSTKSDVWSFGILLWEI 379

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 17/161 (10%)
Query: 30  IRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREI-----E 84
           +RF    +  AA N   +V   DT    +     GP   +  + + G   LR+I      
Sbjct: 57  LRFRREAQNAAALNHPAIVAVYDTG---EAETPAGPLPYIVMEYVDGV-TLRDIVHTEGP 112
Query: 85  VSTSKGIAYLHEECR-------QKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH 137
           ++  + I  + + C+         I+H D+KP ++++      K  DFG+A+        
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNS 172
Query: 138 ITSTGRR-RTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           +T T     T    +PE     SV  + DV+S G +L+EV+
Sbjct: 173 VTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVL 213

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+++ H     +++H D+KP+++L++     K ADFGLA+ +    R +TH   T   R
Sbjct: 114 QGLSFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 170
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 171 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 201

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           LG GQL  +    + G+ YL        VH D+   + L+ +    K  DFG+++     
Sbjct: 126 LGLGQLLAVASQVAAGMVYL---AGLHFVHRDLATRNCLVGQGLVVKIGDFGMSR----- 177
Query: 135 HTHITSTGRRRTPG-CEAPELWMP------YSVTQKCDVFSFGMLLFEV 176
              I ST   R  G    P  WMP         T + DV+SFG++L+E+
Sbjct: 178 --DIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEI 224

>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++  + + PF     Y+   K+ +G   L    V  +KG
Sbjct: 74  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 132
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 133 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 189
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 190 ALESILHRIYTHQSDVWSYGVTVWELM 216

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           LG GQL  +    + G+ YL        VH D+   + L+ +    K  DFG+++     
Sbjct: 155 LGLGQLLAVASQVAAGMVYL---AGLHFVHRDLATRNCLVGQGLVVKIGDFGMSR----- 206
Query: 135 HTHITSTGRRRTPG-CEAPELWMP------YSVTQKCDVFSFGMLLFEV 176
              I ST   R  G    P  WMP         T + DV+SFG++L+E+
Sbjct: 207 --DIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEI 253

>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain (G719sT790M) IN The Apo Form Length = 334

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++  + + PF     Y+   K+ +G   L    V  +KG
Sbjct: 78  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 136
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 137 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 193
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 194 ALESILHRIYTHQSDVWSYGVTVWELM 220

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 17/161 (10%)
Query: 30  IRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREI-----E 84
           +RF    +  AA N   +V   DT    +     GP   +  + + G   LR+I      
Sbjct: 74  LRFRREAQNAAALNHPAIVAVYDTG---EAETPAGPLPYIVMEYVDGV-TLRDIVHTEGP 129
Query: 85  VSTSKGIAYLHEECR-------QKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH 137
           ++  + I  + + C+         I+H D+KP ++++      K  DFG+A+        
Sbjct: 130 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNS 189
Query: 138 ITSTGRR-RTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           +T T     T    +PE     SV  + DV+S G +L+EV+
Sbjct: 190 VTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVL 230

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 17/161 (10%)
Query: 30  IRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREI-----E 84
           +RF    +  AA N   +V   DT    +     GP   +  + + G   LR+I      
Sbjct: 57  LRFRREAQNAAALNHPAIVAVYDTG---EAETPAGPLPYIVMEYVDGV-TLRDIVHTEGP 112
Query: 85  VSTSKGIAYLHEECR-------QKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH 137
           ++  + I  + + C+         I+H D+KP ++++      K  DFG+A+        
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNS 172
Query: 138 ITSTGRR-RTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           +T T     T    +PE     SV  + DV+S G +L+EV+
Sbjct: 173 VTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVL 213

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHITSTGRRR 145
           + +AYLHE     IVH D+KPE++L      +   K ADFGL+K+   +    T  G   
Sbjct: 159 EAVAYLHE---NGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCG--- 212
Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           TPG  APE+    +   + D++S G++ +
Sbjct: 213 TPGYCAPEILRGCAYGPEVDMWSVGIITY 241

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 20/156 (12%)
Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCK------KNILGFGQLREIEVS---- 86
           R++      N++G  D  T  +        YL+         NI+   +L +  V     
Sbjct: 73  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 132
Query: 87  -TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR 145
              +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+     HT    TG   
Sbjct: 133 QILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-----HTDDEMTGYVA 184
Query: 146 TPGCEAPELWM-PYSVTQKCDVFSFGMLLFEVVGRR 180
           T    APE+ +      Q  D++S G ++ E++  R
Sbjct: 185 TRWYRAPEIMLNAMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           LG GQL  +    + G+ YL        VH D+   + L+ +    K  DFG+++     
Sbjct: 132 LGLGQLLAVASQVAAGMVYL---AGLHFVHRDLATRNCLVGQGLVVKIGDFGMSR----- 183
Query: 135 HTHITSTGRRRTPG-CEAPELWMP------YSVTQKCDVFSFGMLLFEV 176
              I ST   R  G    P  WMP         T + DV+SFG++L+E+
Sbjct: 184 --DIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEI 230

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 12/96 (12%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R +TH   T   R
Sbjct: 114 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 170
Query: 146 TPGCEAPELWMPYS-VTQKCDVFSFGMLLFEVVGRR 180
                APE+ +     +   D++S G +  E+V RR
Sbjct: 171 -----APEILLGXKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With Dacomitinib Length = 329

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++  + + PF     Y+   K+ +G   L    V  +KG
Sbjct: 73  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 131
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 132 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 188
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 189 ALESILHRIYTHQSDVWSYGVTVWELM 215

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 19/139 (13%)
Query: 45  SNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVH 104
           S LVG  D    +  FL  G    +     +   Q+  + +S  + ++YLH    Q ++H
Sbjct: 110 SYLVG--DELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLHN---QGVIH 164
Query: 105 YDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR----TPGCEAPELW--MPY 158
            DIK +S+LL  +   K +DFG     ++E        +R+    TP   APE+   +PY
Sbjct: 165 RDIKSDSILLTSDGRIKLSDFGFCAQVSKE------VPKRKXLVGTPYWMAPEVISRLPY 218
Query: 159 SVTQKCDVFSFGMLLFEVV 177
               + D++S G+++ E++
Sbjct: 219 GT--EVDIWSLGIMVIEMI 235

>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation Length = 327

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++  + + PF     Y+   K+ +G   L    V  +KG
Sbjct: 71  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 129
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 130 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 186
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 187 ALESILHRIYTHQSDVWSYGVTVWELM 213

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H+    +I+H D+KP+++L++ +   K ADFGLA+ +    R +TH   T   R
Sbjct: 130 RGVAHCHQ---HRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYR 186
Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            P      L      +   D++S G +  E++
Sbjct: 187 APDV----LMGSKKYSTSVDIWSIGCIFAEMI 214

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 14/171 (8%)
Query: 14  TRTIDKS-LDAMEMDKPIRFTSPQRMIAADNFSNL---VGSEDTETYIKGFLAMGPFYLL 69
            R IDK+ L++  + K  R     +++   N   L   + +E T   +  + + G  +  
Sbjct: 44  VRIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVF-- 101
Query: 70  CKKNILGFGQLREIEVSTS-KGIAYLHEECRQK-IVHYDIKPESVLLDENFFPKAADFGL 127
               ++  G+++E E     + I    + C QK IVH D+K E++LLD +   K ADFG 
Sbjct: 102 --DYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGF 159
Query: 128 AKLYNREHTHITSTGRRRTPGCEAPELWMPYSVT-QKCDVFSFGMLLFEVV 177
           +  +   +      G   +P   APEL+        + DV+S G++L+ +V
Sbjct: 160 SNEFTFGNKLDEFCG---SPPYAAPELFQGKKYDGPEVDVWSLGVILYTLV 207

>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Complex With Aee788 Length = 328

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++  + + PF     Y+   K+ +G   L    V  +KG
Sbjct: 72  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 130
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 131 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 187
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 188 ALESILHRIYTHQSDVWSYGVTVWELM 214

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH 137
           G LR I    + G+ YL +      VH D+   ++L++ N   K +DFGL+++   +   
Sbjct: 149 GMLRGI----AAGMRYLAD---MGYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEA 201
Query: 138 I-TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           + T+TG +      APE       T   DV+S+G++++EV+
Sbjct: 202 VYTTTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVM 242

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 12/96 (12%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R +TH   T   R
Sbjct: 121 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 177
Query: 146 TPGCEAPELWMPYS-VTQKCDVFSFGMLLFEVVGRR 180
                APE+ +     +   D++S G +  E+V RR
Sbjct: 178 -----APEILLGXKYYSTAVDIWSLGCIFAEMVTRR 208

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 14/171 (8%)
Query: 14  TRTIDKS-LDAMEMDKPIRFTSPQRMIAADNFSNL---VGSEDTETYIKGFLAMGPFYLL 69
            + IDK+ L++  + K  R     +++   N   L   + +E T   +  + + G  +  
Sbjct: 37  VKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVF-- 94
Query: 70  CKKNILGFGQLREIEVSTS-KGIAYLHEECRQK-IVHYDIKPESVLLDENFFPKAADFGL 127
               ++  G ++E E     + I    + C QK IVH D+K E++LLD +   K ADFG 
Sbjct: 95  --DYLVAHGWMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGF 152
Query: 128 AKLYNREHTHITSTGRRRTPGCEAPELWMPYSVT-QKCDVFSFGMLLFEVV 177
           +  +   +   T  G   +P   APEL+        + DV+S G++L+ +V
Sbjct: 153 SNEFTFGNKLDTFCG---SPPYAAPELFQGKKYDGPEVDVWSLGVILYTLV 200

>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Compex With Hki-272 Length = 328

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++  + + PF     Y+   K+ +G   L    V  +KG
Sbjct: 72  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGXLLDYVREHKDNIGSQYLLNWCVQIAKG 130
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 131 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 187
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 188 ALESILHRIYTHQSDVWSYGVTVWELM 214

>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently Binding To Wz4002 Length = 331

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++  + + PF     Y+   K+ +G   L    V  +KG
Sbjct: 75  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 133
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 134 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 190
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 191 ALESILHRIYTHQSDVWSYGVTVWELM 217

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H+    +I+H D+KP+++L++ +   K ADFGLA+ +    R +TH   T   R
Sbjct: 130 RGVAHCHQ---HRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYR 186
Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            P      L      +   D++S G +  E++
Sbjct: 187 APDV----LMGSKKYSTSVDIWSIGCIFAEMI 214

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 15  RTIDKS-LDAMEMDKPIRFTSPQRMIAADNFSNL---VGSEDTETYIKGFLAMGPFYLLC 70
           + IDK+ L+   + K  R     +++   N   L   + +E T   I  + + G  +   
Sbjct: 46  KIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVF--- 102
Query: 71  KKNILGFGQLREIEV-STSKGIAYLHEECRQK-IVHYDIKPESVLLDENFFPKAADFGLA 128
              ++  G+++E E  S  + I    + C QK IVH D+K E++LLD +   K ADFG +
Sbjct: 103 -DYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFS 161
Query: 129 KLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQK------CDVFSFGMLLFEVV 177
             +        + G +    C AP    P     K       DV+S G++L+ +V
Sbjct: 162 NEF--------TVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLV 208

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
           GI Y+H   +  IVH D+KPE++LL   +++   K  DFGL+  + +   +     R  T
Sbjct: 133 GITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ---NTKMKDRIGT 186
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLF 174
               APE+ +  +  +KCDV+S G++L+
Sbjct: 187 AYYIAPEV-LRGTYDEKCDVWSAGVILY 213

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NRE 134
           G LR I    + G+ YL E      VH D+   ++L++ N   K +DFGL++     + +
Sbjct: 120 GMLRGI----ASGMRYLAE---MSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSD 172
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            T+ +S G +      APE       T   D +S+G++++EV+
Sbjct: 173 PTYTSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVM 215

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 14/103 (13%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           +L +     ++G+A++ +   +  +H D++  ++L+  +   K ADFGLA++        
Sbjct: 279 KLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLARV-------- 327
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
              G +      APE     S T K DV+SFG+LL E+V   R
Sbjct: 328 ---GAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGR 367

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 73  NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK 129
           NI+    ++       +G+AY H   RQK++H D+KP+++L++E    K ADFGLA+
Sbjct: 95  NIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLAR 148

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 52  DTETYIKGFLAMGPF-YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPE 110
           D  ++I   +  G   Y L +  +     +R        G+ ++H      +V+ D+KP 
Sbjct: 265 DKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRF---VVYRDLKPA 321
Query: 111 SVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE-LWMPYSVTQKCDVFSF 169
           ++LLDE+   + +D GLA  ++++  H  S G   T G  APE L    +     D FS 
Sbjct: 322 NILLDEHGHVRISDLGLACDFSKKKPH-ASVG---THGYMAPEVLQKGVAYDSSADWFSL 377
Query: 170 GMLLFEVV 177
           G +LF+++
Sbjct: 378 GCMLFKLL 385

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 52  DTETYIKGFLAMGPF-YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPE 110
           D  ++I   +  G   Y L +  +     +R        G+ ++H      +V+ D+KP 
Sbjct: 264 DKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRF---VVYRDLKPA 320
Query: 111 SVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE-LWMPYSVTQKCDVFSF 169
           ++LLDE+   + +D GLA  ++++  H  S G   T G  APE L    +     D FS 
Sbjct: 321 NILLDEHGHVRISDLGLACDFSKKKPH-ASVG---THGYMAPEVLQKGVAYDSSADWFSL 376
Query: 170 GMLLFEVV 177
           G +LF+++
Sbjct: 377 GCMLFKLL 384

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 116 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 172
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 173 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 203

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHT 136
           G LR I    + G+ YL +      VH D+   ++L++ N   K +DFGLA+ L +    
Sbjct: 151 GMLRGI----ASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLARVLEDDPEA 203
Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             T+ G +      +PE       T   DV+S+G++L+EV+
Sbjct: 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVM 244

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 114 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 170
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 171 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 201

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 17/123 (13%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK--LYNREHTHITSTGRRRTP 147
           G+ +LH    + IV+ D+K +++LLD++   K ADFG+ K  +     T+        TP
Sbjct: 130 GLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNXFCG----TP 182
Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKWGR 199
              APE+ +        D +SFG+LL+E ++G+          L   I     ++P+W  
Sbjct: 183 DYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLE 242
Query: 200 EEV 202
           +E 
Sbjct: 243 KEA 245

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 118 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 174
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 175 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 205

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 117 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 173
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 174 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 204

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 115 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 171
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 172 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 202

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 114 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 170
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 171 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 201

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 114 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 170
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 171 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 201

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 117 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 173
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 174 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 204

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 116 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 172
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 173 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 203

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 32/129 (24%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLL-----DENFFPKAADFGLAKLYNREHTHITSTGRR 144
           GI Y H   + KIVH D+KPE++LL     D N   +  DFGL+       TH  ++ + 
Sbjct: 138 GITYXH---KNKIVHRDLKPENLLLESKSKDANI--RIIDFGLS-------THFEASKKX 185
Query: 145 R----TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV--------GRRRNLEKEISEGQE 192
           +    T    APE+ +  +  +KCDV+S G++L+ ++            ++ K++ +G+ 
Sbjct: 186 KDKIGTAYYIAPEV-LHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKY 244
Query: 193 WF--PKWGR 199
            F  P+W +
Sbjct: 245 TFELPQWKK 253

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 113 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 169
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 170 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 200

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 18/103 (17%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           + ++Y+H    Q I+H D+KP ++ +DE+   K  DFGLAK  +R    I     +  PG
Sbjct: 127 EALSYIHS---QGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRS-LDILKLDSQNLPG 182
Query: 149 CE-------APELWMPYSV-------TQKCDVFSFGMLLFEVV 177
                       +++   V        +K D++S G++ FE++
Sbjct: 183 SSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMI 225

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 114 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 170
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 171 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 201

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 9/128 (7%)
Query: 52  DTETYIKGFLAMGPF-YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPE 110
           D  ++I   +  G   Y L +  +     +R        G+ ++H    + +V+ D+KP 
Sbjct: 265 DKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPA 321
Query: 111 SVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE-LWMPYSVTQKCDVFSF 169
           ++LLDE+   + +D GLA  ++++  H  S G   T G  APE L    +     D FS 
Sbjct: 322 NILLDEHGHVRISDLGLACDFSKKKPH-ASVG---THGYMAPEVLQKGVAYDSSADWFSL 377
Query: 170 GMLLFEVV 177
           G +LF+++
Sbjct: 378 GCMLFKLL 385

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 9/128 (7%)
Query: 52  DTETYIKGFLAMGPF-YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPE 110
           D  ++I   +  G   Y L +  +     +R        G+ ++H    + +V+ D+KP 
Sbjct: 265 DKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPA 321
Query: 111 SVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE-LWMPYSVTQKCDVFSF 169
           ++LLDE+   + +D GLA  ++++  H  S G   T G  APE L    +     D FS 
Sbjct: 322 NILLDEHGHVRISDLGLACDFSKKKPH-ASVG---THGYMAPEVLQKGVAYDSSADWFSL 377
Query: 170 GMLLFEVV 177
           G +LF+++
Sbjct: 378 GCMLFKLL 385

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 17/161 (10%)
Query: 30  IRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREI-----E 84
           +RF    +  AA N   +V   DT    +     GP   +  + + G   LR+I      
Sbjct: 57  LRFRREAQNAAALNHPAIVAVYDTG---EAETPAGPLPYIVMEYVDGV-TLRDIVHTEGP 112
Query: 85  VSTSKGIAYLHEECR-------QKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH 137
           ++  + I  + + C+         I+H D+KP ++L+      K  DFG+A+        
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANILISATNAVKVVDFGIARAIADSGNS 172
Query: 138 ITSTGRR-RTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           +  T     T    +PE     SV  + DV+S G +L+EV+
Sbjct: 173 VXQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVL 213

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 116 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 172
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 173 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 203

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 18/103 (17%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           + ++Y+H    Q I+H D+KP ++ +DE+   K  DFGLAK  +R    I     +  PG
Sbjct: 127 EALSYIHS---QGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRS-LDILKLDSQNLPG 182
Query: 149 CE-------APELWMPYSV-------TQKCDVFSFGMLLFEVV 177
                       +++   V        +K D++S G++ FE++
Sbjct: 183 SSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMI 225

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 117 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 173
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 174 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 204

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 117 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 173
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 174 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 204

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 86  STSKGIAYLHEECRQKIVHYDIKPESVL-LDENFFP---KAADFGLAKLYNREHTHITST 141
           +  K + YLH    Q +VH D+KP ++L +DE+  P   +  DFG AK    E+  + + 
Sbjct: 129 TIGKTVEYLHS---QGVVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAENGLLMTP 185
Query: 142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
               T    APE+       + CD++S G+LL+ ++ 
Sbjct: 186 CY--TANFVAPEVLKRQGYDEGCDIWSLGILLYTMLA 220

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 117 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 173
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 174 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 204

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 113 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 169
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 170 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 200

>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human Tgf- Beta Type I Receptor Length = 303

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 39  IAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEEC 98
           IAADN  N  G+      +  +   G  +    +  +    + ++ +ST+ G+A+LH E 
Sbjct: 63  IAADNKDN--GTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEI 120
Query: 99  -----RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR--EHTHITSTGRRRTPGCEA 151
                +  I H D+K +++L+ +N     AD GLA  ++   +   I    R  T    A
Sbjct: 121 VGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMA 180
Query: 152 PELWMPYSVTQK-------CDVFSFGMLLFEVVGR 179
           PE+ +  S+  K        D+++ G++ +E+  R
Sbjct: 181 PEV-LDDSINMKHFESFKRADIYAMGLVFWEIARR 214

>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I Tgf-Beta Receptor In Complex With Fkbp12 Length = 342

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 39  IAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEEC 98
           IAADN  N  G+      +  +   G  +    +  +    + ++ +ST+ G+A+LH E 
Sbjct: 102 IAADNKDN--GTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEI 159
Query: 99  -----RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR--EHTHITSTGRRRTPGCEA 151
                +  I H D+K +++L+ +N     AD GLA  ++   +   I    R  T    A
Sbjct: 160 VGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMA 219
Query: 152 PELWMPYSVTQK-------CDVFSFGMLLFEVVGR 179
           PE+ +  S+  K        D+++ G++ +E+  R
Sbjct: 220 PEV-LDDSINMKHFESFKRADIYAMGLVFWEIARR 253

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            + YLHE     IVH D+KPE++L    +EN      DFGL+K+   E   I ST    T
Sbjct: 118 AVKYLHE---NGIVHRDLKPENLLYLTPEENSKIMITDFGLSKM---EQNGIMSTA-CGT 170
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           PG  APE+      ++  D +S G++ +
Sbjct: 171 PGYVAPEVLAQKPYSKAVDCWSIGVITY 198

>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp Site Inhibitor Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 39  IAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEEC 98
           IAADN  N  G+      +  +   G  +    +  +    + ++ +ST+ G+A+LH E 
Sbjct: 64  IAADNKDN--GTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEI 121
Query: 99  -----RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR--EHTHITSTGRRRTPGCEA 151
                +  I H D+K +++L+ +N     AD GLA  ++   +   I    R  T    A
Sbjct: 122 VGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMA 181
Query: 152 PELWMPYSVTQK-------CDVFSFGMLLFEVVGR 179
           PE+ +  S+  K        D+++ G++ +E+  R
Sbjct: 182 PEV-LDDSINMKHFESFKRADIYAMGLVFWEIARR 215

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITSTGRRR 145
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R + H   T   R
Sbjct: 115 QGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYR 171
Query: 146 TP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            P    GC+       YS     D++S G +  E+V RR
Sbjct: 172 APEILLGCKY------YSTA--VDIWSLGCIFAEMVTRR 202

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
           GI Y+H   +  IVH D+KPE++LL   +++   K  DFGL+  + +   +     R  T
Sbjct: 133 GITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ---NTKMKDRIGT 186
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLF 174
               APE+ +  +  +KCDV+S G++L+
Sbjct: 187 AYYIAPEV-LRGTYDEKCDVWSAGVILY 213

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
           GI Y+H   +  IVH D+KPE++LL   +++   K  DFGL+  + +   +     R  T
Sbjct: 133 GITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ---NTKMKDRIGT 186
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLF 174
               APE+ +  +  +KCDV+S G++L+
Sbjct: 187 AYYIAPEV-LRGTYDEKCDVWSAGVILY 213

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 21/125 (16%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR---- 145
           G+ +LH    + IV+ D+K +++LLD++   K ADFG+ K       ++    +      
Sbjct: 131 GLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFGMCK------ENMLGDAKTNEFCG 181
Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKW 197
           TP   APE+ +        D +SFG+LL+E ++G+          L   I     ++P+W
Sbjct: 182 TPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRW 241
Query: 198 GREEV 202
             +E 
Sbjct: 242 LEKEA 246

>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Inhibitor Length = 326

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 39  IAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEEC 98
           IAADN  N  G+      +  +   G  +    +  +    + ++ +ST+ G+A+LH E 
Sbjct: 89  IAADNKDN--GTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEI 146
Query: 99  -----RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR--EHTHITSTGRRRTPGCEA 151
                +  I H D+K +++L+ +N     AD GLA  ++   +   I    R  T    A
Sbjct: 147 VGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMA 206
Query: 152 PELWMPYSVTQK-------CDVFSFGMLLFEVVGR 179
           PE+ +  S+  K        D+++ G++ +E+  R
Sbjct: 207 PEV-LDDSINMKHFESFKRADIYAMGLVFWEIARR 240

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 86  STSKGIAYLHEECRQKIVHYDIKPESVL-LDENFFP---KAADFGLAKLYNREHTHITST 141
           +  K + YLH    Q +VH D+KP ++L +DE+  P   +  DFG AK    E+  + + 
Sbjct: 129 TIGKTVEYLHS---QGVVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAENGLLMTP 185
Query: 142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG 178
               T    APE+       + CD++S G+LL+ ++ 
Sbjct: 186 CY--TANFVAPEVLKRQGYDEGCDIWSLGILLYTMLA 220

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           FY L ++      + R      +  + YLH      IV+ D+KPE++LLD        DF
Sbjct: 127 FYHLQRERCFLEPRARFYAAEIASALGYLHS---LNIVYRDLKPENILLDSQGHIVLTDF 183
Query: 126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           GL K  N EH   TST    TP   APE+       +  D +  G +L+E++
Sbjct: 184 GLCK-ENIEHNSTTST-FCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEML 233

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 21/173 (12%)
Query: 19  KSLDAMEMDKPIR-FTSPQRMIAADNFSNLVGSEDTET------YIKGFLAMGPFYLLCK 71
           K+L A   DK  R F S   ++   +  N++  E   T       I  ++  G      +
Sbjct: 63  KTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLR 122
Query: 72  KN------ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           KN      I   G LR I      G+ YL +      VH D+   ++L++ N   K +DF
Sbjct: 123 KNDGRFTVIQLVGMLRGI----GSGMKYLSD---MSAVHRDLAARNILVNSNLVCKVSDF 175
Query: 126 GLAK-LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           G+++ L +      T+ G +      APE       T   DV+S+G++++EV+
Sbjct: 176 GMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVM 228

>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542 Length = 309

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 39  IAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEEC 98
           IAADN  N  G+      +  +   G  +    +  +    + ++ +ST+ G+A+LH E 
Sbjct: 69  IAADNKDN--GTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEI 126
Query: 99  -----RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR--EHTHITSTGRRRTPGCEA 151
                +  I H D+K +++L+ +N     AD GLA  ++   +   I    R  T    A
Sbjct: 127 VGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMA 186
Query: 152 PELWMPYSVTQK-------CDVFSFGMLLFEVVGR 179
           PE+ +  S+  K        D+++ G++ +E+  R
Sbjct: 187 PEV-LDDSINMKHFESFKRADIYAMGLVFWEIARR 220

>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3- Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 39  IAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEEC 98
           IAADN  N  G+      +  +   G  +    +  +    + ++ +ST+ G+A+LH E 
Sbjct: 66  IAADNKDN--GTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEI 123
Query: 99  -----RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR--EHTHITSTGRRRTPGCEA 151
                +  I H D+K +++L+ +N     AD GLA  ++   +   I    R  T    A
Sbjct: 124 VGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMA 183
Query: 152 PELWMPYSVTQK-------CDVFSFGMLLFEVVGR 179
           PE+ +  S+  K        D+++ G++ +E+  R
Sbjct: 184 PEV-LDDSINMKHFESFKRADIYAMGLVFWEIARR 217

>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv1531 Length = 322

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            + YLHE     I+H D+KPE+VLL   +E+   K  DFG +K+        T  G   T
Sbjct: 126 AVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCG---T 179
Query: 147 PGCEAPELWMPYSVT---QKCDVFSFGMLLF 174
           P   APE+ +        +  D +S G++LF
Sbjct: 180 PTYLAPEVLVSVGTAGYNRAVDCWSLGVILF 210

>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 (rsk2) Length = 342

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 86  STSKGIAYLHEECRQKIVHYDIKPESVL-LDENFFPKA---ADFGLAKLYNREHTHITST 141
           + +K + YLH    Q +VH D+KP ++L +DE+  P++    DFG AK    E+  + + 
Sbjct: 124 TITKTVEYLHA---QGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTP 180
Query: 142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
               T    APE+         CD++S G+LL+ ++
Sbjct: 181 CY--TANFVAPEVLERQGYDAACDIWSLGVLLYTML 214

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 45  SNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVH 104
           S LVG  D    +  FL  G    +     +   Q+  + ++  + ++ LH    Q ++H
Sbjct: 94  SYLVG--DELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHA---QGVIH 148
Query: 105 YDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR----TPGCEAPELW--MPY 158
            DIK +S+LL  +   K +DFG     ++E        RR+    TP   APEL   +PY
Sbjct: 149 RDIKSDSILLTHDGRVKLSDFGFCAQVSKE------VPRRKXLVGTPYWMAPELISRLPY 202
Query: 159 SVTQKCDVFSFGMLLFEVV 177
               + D++S G+++ E+V
Sbjct: 203 G--PEVDIWSLGIMVIEMV 219

>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From Cryptosporidium Parvum, Cgd7_40 Length = 345

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 47/92 (51%), Gaps = 13/92 (14%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDEN--FFPKAADFGLA----KLYNREHTHITSTGR 143
            + YLH    Q I H DIKPE+ L   N  F  K  DFGL+    KL N E+  +T+  +
Sbjct: 180 ALHYLHN---QGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTT--K 234
Query: 144 RRTPGCEAPELWMPY--SVTQKCDVFSFGMLL 173
             TP   APE+      S   KCD +S G+LL
Sbjct: 235 AGTPYFVAPEVLNTTNESYGPKCDAWSAGVLL 266

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++    + PF     Y+   K+ +G   L    V  +KG
Sbjct: 71  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 129
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 130 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 186
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 187 ALESILHRIYTHQSDVWSYGVTVWELM 213

>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv976 Length = 323

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            + YLHE     I+H D+KPE+VLL   +E+   K  DFG +K+        T  G   T
Sbjct: 126 AVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCG---T 179
Query: 147 PGCEAPELWMPYSVT---QKCDVFSFGMLLF 174
           P   APE+ +        +  D +S G++LF
Sbjct: 180 PTYLAPEVLVSVGTAGYNRAVDCWSLGVILF 210

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 21/173 (12%)
Query: 19  KSLDAMEMDKPIR-FTSPQRMIAADNFSNLVGSEDTET------YIKGFLAMGPFYLLCK 71
           K+L A   DK  R F S   ++   +  N++  E   T       I  ++  G      +
Sbjct: 48  KTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLR 107
Query: 72  KN------ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           KN      I   G LR I      G+ YL +      VH D+   ++L++ N   K +DF
Sbjct: 108 KNDGRFTVIQLVGMLRGI----GSGMKYLSD---MSYVHRDLAARNILVNSNLVCKVSDF 160
Query: 126 GLAK-LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           G+++ L +      T+ G +      APE       T   DV+S+G++++EV+
Sbjct: 161 GMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVM 213

>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A Specific Inhibitor Length = 323

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            + YLHE     I+H D+KPE+VLL   +E+   K  DFG +K+        T  G   T
Sbjct: 126 AVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCG---T 179
Query: 147 PGCEAPELWMPYSVT---QKCDVFSFGMLLF 174
           P   APE+ +        +  D +S G++LF
Sbjct: 180 PTYLAPEVLVSVGTAGYNRAVDCWSLGVILF 210

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++    + PF     Y+   K+ +G   L    V  +KG
Sbjct: 81  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 139
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 140 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 196
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 197 ALESILHRIYTHQSDVWSYGVTVWELM 223

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL E+     + + YL     ++ +H D+   + L+++    K +DFGL++ Y  +  + 
Sbjct: 105 QLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSR-YVLDDEYT 160
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           +S G +       PE+ M    + K D+++FG+L++E+
Sbjct: 161 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEI 198

>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And Kinase Domains Length = 361

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++    + PF     Y+   K+ +G   L    V  +KG
Sbjct: 105 MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 163
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 164 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 220
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 221 ALESILHRIYTHQSDVWSYGVTVWELM 247

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 64  GPF--YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPK 121
           GP   +L+ K+  +    + E+    S G+ YL E   +  VH ++   +VLL    + K
Sbjct: 420 GPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEE---KNFVHRNLAARNVLLVNRHYAK 476
Query: 122 AADFGLAKLYNREHTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            +DFGL+K    + ++ T+    + P    APE       + + DV+S+G+ ++E +
Sbjct: 477 ISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEAL 533

>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In Complex With Inhibitor Pv1533 Length = 322

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            + YLHE     I+H D+KPE+VLL   +E+   K  DFG +K+        T  G   T
Sbjct: 125 AVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCG---T 178
Query: 147 PGCEAPELWMPYSVT---QKCDVFSFGMLLF 174
           P   APE+ +        +  D +S G++LF
Sbjct: 179 PTYLAPEVLVSVGTAGYNRAVDCWSLGVILF 209

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NRE 134
           G LR I    + G+ YL +      VH D+   ++L++ N   K +DFGL++       +
Sbjct: 139 GMLRGI----AAGMKYLAD---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSD 191
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            T+ ++ G +      APE       T   DV+S+G++++EV+
Sbjct: 192 PTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVM 234

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Query: 45  SNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVH 104
           S LVG  D    +  FL  G    +     +   Q+  + ++  + ++ LH    Q ++H
Sbjct: 216 SYLVG--DELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHA---QGVIH 270
Query: 105 YDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR----TPGCEAPELWMPYSV 160
            DIK +S+LL  +   K +DFG     ++E        RR+    TP   APEL      
Sbjct: 271 RDIKSDSILLTHDGRVKLSDFGFCAQVSKE------VPRRKXLVGTPYWMAPELISRLPY 324
Query: 161 TQKCDVFSFGMLLFEVV 177
             + D++S G+++ E+V
Sbjct: 325 GPEVDIWSLGIMVIEMV 341

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL E+     + + YL     ++ +H D+   + L+++    K +DFGL++ Y  +  + 
Sbjct: 106 QLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSR-YVLDDEYT 161
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           +S G +       PE+ M    + K D+++FG+L++E+
Sbjct: 162 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEI 199

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL E+     + + YL     ++ +H D+   + L+++    K +DFGL++ Y  +  + 
Sbjct: 121 QLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSR-YVLDDEYT 176
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           +S G +       PE+ M    + K D+++FG+L++E+
Sbjct: 177 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEI 214

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 17/109 (15%)
Query: 80  LREIEVSTS-----KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L+E+E++       +G+AYLH      ++H D+K  ++LL E    K  DFG A +    
Sbjct: 151 LQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA 207
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQ---KCDVFSFGMLLFEVVGRR 180
           +  +       TP   APE+ +     Q   K DV+S G+   E+  R+
Sbjct: 208 NXFVG------TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERK 250

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL E+     + + YL     ++ +H D+   + L+++    K +DFGL++ Y  +  + 
Sbjct: 112 QLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSR-YVLDDEYT 167
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           +S G +       PE+ M    + K D+++FG+L++E+
Sbjct: 168 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEI 205

>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2: Se-Met Derivative Length = 342

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 86  STSKGIAYLHEECRQKIVHYDIKPESVL-LDENFFPKA---ADFGLAKLYNREHTHITST 141
           + +K + YLH    Q +VH D+KP ++L +DE+  P++    DFG AK    E+  + + 
Sbjct: 124 TITKTVEYLHA---QGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLXTP 180
Query: 142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
               T    APE+         CD++S G+LL+
Sbjct: 181 CY--TANFVAPEVLERQGYDAACDIWSLGVLLY 211

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 45  SNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVH 104
           S LVG  D    +  FL  G    +     +   Q+  + ++  + ++ LH    Q ++H
Sbjct: 85  SYLVG--DELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHA---QGVIH 139
Query: 105 YDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR----TPGCEAPELW--MPY 158
            DIK +S+LL  +   K +DFG     ++E        RR+    TP   APEL   +PY
Sbjct: 140 RDIKSDSILLTHDGRVKLSDFGFCAQVSKE------VPRRKXLVGTPYWMAPELISRLPY 193
Query: 159 SVTQKCDVFSFGMLLFEVV 177
               + D++S G+++ E+V
Sbjct: 194 G--PEVDIWSLGIMVIEMV 210

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Query: 45  SNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVH 104
           S LVG  D    +  FL  G    +     +   Q+  + ++  + ++ LH    Q ++H
Sbjct: 96  SYLVG--DELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHA---QGVIH 150
Query: 105 YDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR----TPGCEAPELWMPYSV 160
            DIK +S+LL  +   K +DFG     ++E        RR+    TP   APEL      
Sbjct: 151 RDIKSDSILLTHDGRVKLSDFGFCAQVSKE------VPRRKXLVGTPYWMAPELISRLPY 204
Query: 161 TQKCDVFSFGMLLFEVV 177
             + D++S G+++ E+V
Sbjct: 205 GPEVDIWSLGIMVIEMV 221

>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++    + PF     Y+   K+ +G   L    V  +KG
Sbjct: 74  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 132
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 133 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 189
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 190 ALESILHRIYTHQSDVWSYGVTVWELM 216

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 21/173 (12%)
Query: 19  KSLDAMEMDKPIR-FTSPQRMIAADNFSNLVGSEDTET------YIKGFLAMGPFYLLCK 71
           K+L A   DK  R F S   ++   +  N++  E   T       I  ++  G      +
Sbjct: 42  KTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLR 101
Query: 72  KN------ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           KN      I   G LR I      G+ YL +      VH D+   ++L++ N   K +DF
Sbjct: 102 KNDGRFTVIQLVGMLRGI----GSGMKYLSD---MSYVHRDLAARNILVNSNLVCKVSDF 154
Query: 126 GLAK-LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           G+++ L +      T+ G +      APE       T   DV+S+G++++EV+
Sbjct: 155 GMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVM 207

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + K ADFG AK        +       TP   AP
Sbjct: 157 YLHS---LDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKGRTWXLCG-----TPEYLAP 208
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 209 EIILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain Length = 330

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++    + PF     Y+   K+ +G   L    V  +KG
Sbjct: 74  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 132
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 133 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 189
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 190 ALESILHRIYTHQSDVWSYGVTVWELM 216

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL E+     + + YL     ++ +H D+   + L+++    K +DFGL++ Y  +  + 
Sbjct: 101 QLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSR-YVLDDEYT 156
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           +S G +       PE+ M    + K D+++FG+L++E+
Sbjct: 157 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEI 194

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++    + PF     Y+   K+ +G   L    V  +KG
Sbjct: 78  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 136
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 137 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 193
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 194 ALESILHRIYTHQSDVWSYGVTVWELM 220

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Query: 45  SNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVH 104
           S LVG  D    +  FL  G    +     +   Q+  + ++  + ++ LH    Q ++H
Sbjct: 89  SYLVG--DELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHA---QGVIH 143
Query: 105 YDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR----TPGCEAPELWMPYSV 160
            DIK +S+LL  +   K +DFG     ++E        RR+    TP   APEL      
Sbjct: 144 RDIKSDSILLTHDGRVKLSDFGFCAQVSKE------VPRRKXLVGTPYWMAPELISRLPY 197
Query: 161 TQKCDVFSFGMLLFEVV 177
             + D++S G+++ E+V
Sbjct: 198 GPEVDIWSLGIMVIEMV 214

>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In Complex With Amp-Pnp Length = 330

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++    + PF     Y+   K+ +G   L    V  +KG
Sbjct: 74  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 132
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 133 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 189
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 190 ALESILHRIYTHQSDVWSYGVTVWELM 216

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++    + PF     Y+   K+ +G   L    V  +KG
Sbjct: 65  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 123
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 124 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 180
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 181 ALESILHRIYTHQSDVWSYGVTVWELM 207

>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++    + PF     Y+   K+ +G   L    V  +KG
Sbjct: 71  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 129
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 130 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 186
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 187 ALESILHRIYTHQSDVWSYGVTVWELM 213

>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp Length = 329

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            + YLHE     I+H D+KPE+VLL   +E+   K  DFG +K+        T  G   T
Sbjct: 132 AVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCG---T 185
Query: 147 PGCEAPELWMPYSVT---QKCDVFSFGMLLF 174
           P   APE+ +        +  D +S G++LF
Sbjct: 186 PTYLAPEVLVSVGTAGYNRAVDCWSLGVILF 216

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NRE 134
           G LR I    + G+ YL E      VH D+   ++L++ N   K +DFGL++     + +
Sbjct: 122 GMLRGI----ASGMRYLAE---MSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSD 174
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            T  +S G +      APE       T   D +S+G++++EV+
Sbjct: 175 PTETSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVM 217

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 14/171 (8%)
Query: 14  TRTIDKS-LDAMEMDKPIRFTSPQRMIAADNFSNL---VGSEDTETYIKGFLAMGPFYLL 69
            + IDK+ L++  + K  R     +++   N   L   + +E T   +  + + G  +  
Sbjct: 44  VKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVF-- 101
Query: 70  CKKNILGFGQLREIEVSTS-KGIAYLHEECRQK-IVHYDIKPESVLLDENFFPKAADFGL 127
               ++  G+++E E     + I    + C QK IVH D+K E++LLD +   K ADFG 
Sbjct: 102 --DYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGF 159
Query: 128 AKLYNREHTHITSTGRRRTPGCEAPELWMPYSVT-QKCDVFSFGMLLFEVV 177
           +  +   +      G    P   APEL+        + DV+S G++L+ +V
Sbjct: 160 SNEFTFGNKLDAFCG---APPYAAPELFQGKKYDGPEVDVWSLGVILYTLV 207

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 81  REIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITS 140
           R IEV  +     L+   +  I+H D+KP ++++      K  DFG+A+        +T 
Sbjct: 117 RAIEV-IADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQ 175
Query: 141 TGRR-RTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T     T    +PE     SV  + DV+S G +L+EV+
Sbjct: 176 TAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVL 213

>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s) Length = 334

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++    + PF     Y+   K+ +G   L    V  +KG
Sbjct: 78  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 136
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 137 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 193
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 194 ALESILHRIYTHQSDVWSYGVTVWELM 220

>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++    + PF     Y+   K+ +G   L    V  +KG
Sbjct: 71  MASVDNPHVCRLLGICLTST-VQLITQLMPFGXLLDYVREHKDNIGSQYLLNWCVQIAKG 129
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 130 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 186
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 187 ALESILHRIYTHQSDVWSYGVTVWELM 213

>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In Complex With Dacomitinib (soaked) Length = 329

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++    + PF     Y+   K+ +G   L    V  +KG
Sbjct: 73  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 131
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 132 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 188
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 189 ALESILHRIYTHQSDVWSYGVTVWELM 215

>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In Complex With Amp-Pnp Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++    + PF     Y+   K+ +G   L    V  +KG
Sbjct: 71  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 129
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 130 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 186
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 187 ALESILHRIYTHQSDVWSYGVTVWELM 213

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + K ADFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor- Gw572016 Length = 352

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++    + PF     Y+   K+ +G   L    V  +KG
Sbjct: 96  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 154
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 155 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 211
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 212 ALESILHRIYTHQSDVWSYGVTVWELM 238

>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor Receptor Length = 333

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++    + PF     Y+   K+ +G   L    V  +KG
Sbjct: 77  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 135
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 136 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 192
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 193 ALESILHRIYTHQSDVWSYGVTVWELM 219

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + K ADFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHT 136
           G LR I    + G+ YL +      VH D+   ++L++ N   K +DFGL++ L +    
Sbjct: 139 GMLRGI----ASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 191
Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             T+ G +      +PE       T   DV+S+G++L+EV+
Sbjct: 192 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVM 232

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + K ADFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Query: 45  SNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVH 104
           S LVG  D    +  FL  G    +     +   Q+  + ++  + ++ LH    Q ++H
Sbjct: 139 SYLVG--DELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHA---QGVIH 193
Query: 105 YDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR----TPGCEAPELWMPYSV 160
            DIK +S+LL  +   K +DFG     ++E        RR+    TP   APEL      
Sbjct: 194 RDIKSDSILLTHDGRVKLSDFGFCAQVSKE------VPRRKXLVGTPYWMAPELISRLPY 247
Query: 161 TQKCDVFSFGMLLFEVV 177
             + D++S G+++ E+V
Sbjct: 248 GPEVDIWSLGIMVIEMV 264

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHT 136
           G LR I    + G+ YL +      VH D+   ++L++ N   K +DFGL++ L +    
Sbjct: 122 GMLRGI----ASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 174
Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             T+ G +      +PE       T   DV+S+G++L+EV+
Sbjct: 175 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVM 215

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHT 136
           G LR I    + G+ YL +      VH D+   ++L++ N   K +DFGL++ L +    
Sbjct: 122 GMLRGI----ASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 174
Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             T+ G +      +PE       T   DV+S+G++L+EV+
Sbjct: 175 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVM 215

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHT 136
           G LR I    + G+ YL +      VH D+   ++L++ N   K +DFGL++ L +    
Sbjct: 151 GMLRGI----ASGMKYLSD---MGFVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 203
Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             T+ G +      +PE       T   DV+S+G++L+EV+
Sbjct: 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVM 244

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           LG   L    +  +KG++YL +    ++VH D+   +VL+      K  DFGLA+L + +
Sbjct: 116 LGSQDLLNWCMQIAKGMSYLED---VRLVHRDLAARNVLVKSPNHVKITDFGLARLLDID 172
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            T   + G +      A E  +    T + DV+S+G+ ++E++
Sbjct: 173 ETEYHADGGKVPIKWMALESILRRRFTHQSDVWSYGVTVWELM 215

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHT 136
           G LR I    + G+ YL +      VH D+   ++L++ N   K +DFGL++ L +    
Sbjct: 151 GMLRGI----ASGMKYLSD---MGAVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 203
Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             T+ G +      +PE       T   DV+S+G++L+EV+
Sbjct: 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVM 244

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 17/109 (15%)
Query: 80  LREIEVSTS-----KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L+E+E++       +G+AYLH      ++H D+K  ++LL E    K  DFG A +    
Sbjct: 112 LQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA 168
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQ---KCDVFSFGMLLFEVVGRR 180
           +  +       TP   APE+ +     Q   K DV+S G+   E+  R+
Sbjct: 169 NXFVG------TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERK 211

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 83  IEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR---EHTHIT 139
           I +  ++ + +LH    + ++H D+KP ++    +   K  DFGL    ++   E T +T
Sbjct: 123 IFLQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLT 179
Query: 140 -------STGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
                   TG+  T    +PE     S + K D+FS G++LFE++
Sbjct: 180 PMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELL 224

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 9/134 (6%)
Query: 45  SNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVH 104
           S LVG  D    +  +LA G    +  +  +  GQ+  +     + + +LH     +++H
Sbjct: 85  SYLVG--DELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHS---NQVIH 139
Query: 105 YDIKPESVLLDENFFPKAADFGL-AKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQK 163
            DIK +++LL  +   K  DFG  A++   +    T  G   TP   APE+    +   K
Sbjct: 140 RDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVG---TPYWMAPEVVTRKAYGPK 196
Query: 164 CDVFSFGMLLFEVV 177
            D++S G++  E++
Sbjct: 197 VDIWSLGIMAIEMI 210

>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 419

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            + YLHE     I+H D+KPE+VLL   +E+   K  DFG +K+        T  G   T
Sbjct: 251 AVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCG---T 304
Query: 147 PGCEAPELWMPYSVT---QKCDVFSFGMLLF 174
           P   APE+ +        +  D +S G++LF
Sbjct: 305 PTYLAPEVLVSVGTAGYNRAVDCWSLGVILF 335

>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 443

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            + YLHE     I+H D+KPE+VLL   +E+   K  DFG +K+        T  G   T
Sbjct: 265 AVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCG---T 318
Query: 147 PGCEAPELWMPYSVT---QKCDVFSFGMLLF 174
           P   APE+ +        +  D +S G++LF
Sbjct: 319 PTYLAPEVLVSVGTAGYNRAVDCWSLGVILF 349

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL E+     + + YL     ++ +H D+   + L+++    K +DFGL++ Y  +  + 
Sbjct: 106 QLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSR-YVLDDEYT 161
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           +S G +       PE+ M    + K D+++FG+L++E+
Sbjct: 162 SSRGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEI 199

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHT 136
           G LR I    + G+ YL +      VH D+   ++L++ N   K +DFGL++ L +    
Sbjct: 151 GMLRGI----ASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 203
Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             T+ G +      +PE       T   DV+S+G++L+EV+
Sbjct: 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVM 244

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRR--R 145
           S G+ +LH   ++ I++ D+K ++V+LD     K ADFG+ K    EH     T R    
Sbjct: 130 SIGLFFLH---KRGIIYRDLKLDNVMLDSEGHIKIADFGMCK----EHMMDGVTTREFCG 182
Query: 146 TPGCEAPEL--WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE 186
           TP   APE+  + PY   +  D +++G+LL+E++  +   + E
Sbjct: 183 TPDYIAPEIIAYQPYG--KSVDWWAYGVLLYEMLAGQPPFDGE 223

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHT 136
           G LR I    + G+ YL +      VH D+   ++L++ N   K +DFGL++ L +    
Sbjct: 151 GMLRGI----ASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 203
Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             T+ G +      +PE       T   DV+S+G++L+EV+
Sbjct: 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVM 244

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHT 136
           G LR I    + G+ YL +      VH D+   ++L++ N   K +DFGL++ L +    
Sbjct: 149 GMLRGI----ASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 201
Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             T+ G +      +PE       T   DV+S+G++L+EV+
Sbjct: 202 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVM 242

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           Y+   K+ +G   L    V  +KG+ YL E   +++VH D+   +VL+      K  DFG
Sbjct: 106 YVHEHKDNIGSQLLLNWCVQIAKGMMYLEE---RRLVHRDLAARNVLVKSPNHVKITDFG 162
Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           LA+L   +     + G +      A E       T + DV+S+G+ ++E++
Sbjct: 163 LARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELM 213

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHT 136
           G LR I    + G+ YL +      VH D+   ++L++ N   K +DFGL++ L +    
Sbjct: 151 GMLRGI----ASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 203
Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             T+ G +      +PE       T   DV+S+G++L+EV+
Sbjct: 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVM 244

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           Q+  I    + G+ YL     Q  VH D+   + L+ EN   K  DFG+++        +
Sbjct: 129 QMLHIAQQIAAGMVYL---ASQHFVHRDLATRNCLVGENLLVKIGDFGMSR-------DV 178
Query: 139 TSTGRRRTPG-CEAPELWMP------YSVTQKCDVFSFGMLLFEV 176
            ST   R  G    P  WMP         T + DV+S G++L+E+
Sbjct: 179 YSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEI 223

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHT 136
           G LR I    + G+ YL +      VH D+   ++L++ N   K +DFGL++ L +    
Sbjct: 151 GMLRGI----ASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 203
Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             T+ G +      +PE       T   DV+S+G++L+EV+
Sbjct: 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVM 244

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHT 136
           G LR I    + G+ YL +      VH D+   ++L++ N   K +DFGL++ L +    
Sbjct: 151 GMLRGI----ASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 203
Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             T+ G +      +PE       T   DV+S+G++L+EV+
Sbjct: 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVM 244

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 14/90 (15%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHITSTGRRR- 145
           G  YLH   +  IVH D+KPE++LL+    +   K  DFGL+      H  +    + R 
Sbjct: 116 GTTYLH---KHNIVHRDLKPENLLLESKSRDALIKIVDFGLSA-----HFEVGGKMKERL 167
Query: 146 -TPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
            T    APE+ +     +KCDV+S G++L+
Sbjct: 168 GTAYYIAPEV-LRKKYDEKCDVWSCGVILY 196

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL E+     + + YL     ++ +H D+   + L+++    K +DFGL++ Y  +    
Sbjct: 121 QLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSR-YVLDDEET 176
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           +S G +       PE+ M    + K D+++FG+L++E+
Sbjct: 177 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEI 214

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 14/94 (14%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           KG+ YL     ++ VH D+   ++L++     K ADFGLAKL   +  +       R PG
Sbjct: 125 KGMEYLGS---RRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVV----REPG 177
Query: 149 CEAPELW-MPYSV-----TQKCDVFSFGMLLFEV 176
            ++P  W  P S+     +++ DV+SFG++L+E+
Sbjct: 178 -QSPIFWYAPESLSDNIFSRQSDVWSFGVVLYEL 210

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 18/98 (18%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR--- 145
           +G+++LH+    K++H DIK ++VLL EN   K  DFG++   +R      + GRR    
Sbjct: 140 RGLSHLHQ---HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDR------TVGRRNTFI 190
Query: 146 -TPGCEAPELWM----PYSVTQ-KCDVFSFGMLLFEVV 177
            TP   APE+      P +    K D++S G+   E+ 
Sbjct: 191 GTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMA 228

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 14/94 (14%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           KG+ YL     ++ VH D+   ++L++     K ADFGLAKL   +  +       R PG
Sbjct: 138 KGMEYLGS---RRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVV----REPG 190
Query: 149 CEAPELW-MPYSV-----TQKCDVFSFGMLLFEV 176
            ++P  W  P S+     +++ DV+SFG++L+E+
Sbjct: 191 -QSPIFWYAPESLSDNIFSRQSDVWSFGVVLYEL 223

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           Y+   K+ +G   L    V  +KG+ YL E   +++VH D+   +VL+      K  DFG
Sbjct: 129 YVHEHKDNIGSQLLLNWCVQIAKGMMYLEE---RRLVHRDLAARNVLVKSPNHVKITDFG 185
Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           LA+L   +     + G +      A E       T + DV+S+G+ ++E++
Sbjct: 186 LARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELM 236

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 15/93 (16%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           G  YLH   R +++H D+K  ++ L+E+   K  DFGLA       T +   G R+   C
Sbjct: 129 GCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLA-------TKVEYDGERKKTLC 178
Query: 150 EAPELWMPYSVTQK-----CDVFSFGMLLFEVV 177
             P    P  +++K      DV+S G +++ ++
Sbjct: 179 GTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLL 211

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHT 136
           G LR I    + G+ YL +      VH D+   ++L++ N   K +DFGL + L +    
Sbjct: 151 GMLRGI----ASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEA 203
Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             T+ G +      +PE       T   DV+S+G++L+EV+
Sbjct: 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVM 244

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 15/93 (16%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           G  YLH   R +++H D+K  ++ L+E+   K  DFGLA       T +   G R+   C
Sbjct: 129 GCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLA-------TKVEYDGERKKTLC 178
Query: 150 EAPELWMPYSVTQK-----CDVFSFGMLLFEVV 177
             P    P  +++K      DV+S G +++ ++
Sbjct: 179 GTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLL 211

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 14/94 (14%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           KG+ YL     ++ VH D+   ++L++     K ADFGLAKL   +  +       R PG
Sbjct: 126 KGMEYLGS---RRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVV----REPG 178
Query: 149 CEAPELW-MPYSV-----TQKCDVFSFGMLLFEV 176
            ++P  W  P S+     +++ DV+SFG++L+E+
Sbjct: 179 -QSPIFWYAPESLSDNIFSRQSDVWSFGVVLYEL 211

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 15/93 (16%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           G  YLH   R +++H D+K  ++ L+E+   K  DFGLA       T +   G R+   C
Sbjct: 133 GCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLA-------TKVEYDGERKKTLC 182
Query: 150 EAPELWMPYSVTQK-----CDVFSFGMLLFEVV 177
             P    P  +++K      DV+S G +++ ++
Sbjct: 183 GTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLL 215

>pdb|2VAG|A Chain A, Crystal Structure Of Di-Phosphorylated Human Clk1 In Complex With A Novel Substituted Indole Inhibitor Length = 339

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 27/118 (22%)
Query: 77  FGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL-----DENFFPK---------- 121
              +R++     K + +LH     K+ H D+KPE++L       E + PK          
Sbjct: 117 LDHIRKMAYQICKSVNFLHS---NKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLIN 173
Query: 122 ----AADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFE 175
                 DFG A  Y+ EH H T    R      APE+ +    +Q CDV+S G +L E
Sbjct: 174 PDIKVVDFGSAT-YDDEH-HSTLVXXRHY---RAPEVILALGWSQPCDVWSIGCILIE 226

>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRR-RT 146
           +KG+ Y+H    +K++H D+KP ++ L +    K  DFGL        T + + G+R R+
Sbjct: 146 TKGVDYIHS---KKLIHRDLKPSNIFLVDTKQVKIGDFGLV-------TSLKNDGKRTRS 195
Query: 147 PGC---EAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            G     +PE        ++ D+++ G++L E++
Sbjct: 196 KGTLRYMSPEQISSQDYGKEVDLYALGLILAELL 229

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 15/93 (16%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           G  YLH   R +++H D+K  ++ L+E+   K  DFGLA       T +   G R+   C
Sbjct: 127 GCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLA-------TKVEYDGERKKVLC 176
Query: 150 EAPELWMPYSVTQK-----CDVFSFGMLLFEVV 177
             P    P  +++K      DV+S G +++ ++
Sbjct: 177 GTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLL 209

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHTHITSTGRRRTPG 148
           G+ +LH      I++ D+KPE++LLDE    K  DFGL+K   + E    +  G   T  
Sbjct: 142 GLDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFCG---TVE 195
Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             APE+      +   D +S+G+L+FE++
Sbjct: 196 YMAPEVVNRQGHSHSADWWSYGVLMFEML 224

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 15/93 (16%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           G  YLH   R +++H D+K  ++ L+E+   K  DFGLA       T +   G R+   C
Sbjct: 151 GCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLA-------TKVEYDGERKKVLC 200
Query: 150 EAPELWMPYSVTQK-----CDVFSFGMLLFEVV 177
             P    P  +++K      DV+S G +++ ++
Sbjct: 201 GTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLL 233

>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The Gefitinib/erlotinib Resistant Egfr Kinase Domain L858r+t790m Length = 329

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++  + + PF     Y+   K+ +G   L    V  +KG
Sbjct: 73  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 131
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFG AKL   E     + G +      
Sbjct: 132 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWM 188
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 189 ALESILHRIYTHQSDVWSYGVTVWELM 215

>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated Protein Kinase-Activated Protein Kinase 3 (Mk3)-Inhibitor Complex Length = 336

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHI 138
           EI       I +LH      I H D+KPE++L    +++   K  DFG AK    E T  
Sbjct: 132 EIMRDIGTAIQFLHS---HNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAK----ETTQN 184
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
                  TP   APE+  P    + CD++S G++++
Sbjct: 185 ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMY 220

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++++D+  + K  DFGLAK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLMIDQQGYIKVTDFGLAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHI 138
           EI       I +LH      I H D+KPE++L    +++   K  DFG AK    E T  
Sbjct: 113 EIMRDIGTAIQFLHS---HNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAK----ETTQN 165
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
                  TP   APE+  P    + CD++S G++++
Sbjct: 166 ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMY 201

>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In Complex With Mig6 Peptide Length = 329

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++  + + PF     Y+   K+ +G   L    V  +KG
Sbjct: 73  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 131
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFG AKL   E     + G +      
Sbjct: 132 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWM 188
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 189 ALESILHRIYTHQSDVWSYGVTVWELM 215

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
           T +G+ YLH     +++H D+K  ++ L+++   K  DFGLA       T I   G R+ 
Sbjct: 135 TIQGVQYLHN---NRVIHRDLKLGNLFLNDDMDVKIGDFGLA-------TKIEFDGERKK 184
Query: 147 PGCEAPELWMPYSVTQK-----CDVFSFGMLLFEVV 177
             C  P    P  + +K      D++S G +L+ ++
Sbjct: 185 DLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLL 220

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 15/93 (16%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           G  YLH   R +++H D+K  ++ L+E+   K  DFGLA       T +   G R+   C
Sbjct: 153 GCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLA-------TKVEYDGERKKVLC 202
Query: 150 EAPELWMPYSVTQK-----CDVFSFGMLLFEVV 177
             P    P  +++K      DV+S G +++ ++
Sbjct: 203 GTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLL 235

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 14/90 (15%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHITSTGRRR- 145
           G  YLH   +  IVH D+KPE++LL+    +   K  DFGL+      H  +    + R 
Sbjct: 133 GTTYLH---KHNIVHRDLKPENLLLESKSRDALIKIVDFGLS-----AHFEVGGKMKERL 184
Query: 146 -TPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
            T    APE+ +     +KCDV+S G++L+
Sbjct: 185 GTAYYIAPEV-LRKKYDEKCDVWSCGVILY 213

>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain Length = 332

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH-- 135
           G    I +  ++ + +LH    + ++H D+KP ++    +   K  DFGL    +++   
Sbjct: 164 GVCLHIFIQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEE 220
Query: 136 --------THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
                    + T  G+  T    +PE     + + K D+FS G++LFE++
Sbjct: 221 QTVLTPMPAYATHXGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELL 270

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 14/171 (8%)
Query: 14  TRTIDKS-LDAMEMDKPIRFTSPQRMIAADNFSNL---VGSEDTETYIKGFLAMGPFYLL 69
            + IDK+ L++  + K  R     +++   N   L   + +E T   +  + + G  +  
Sbjct: 44  VKIIDKTQLNSSSLQKLFREVRIXKVLNHPNIVKLFEVIETEKTLYLVXEYASGGEVF-- 101
Query: 70  CKKNILGFGQLREIEVSTS-KGIAYLHEECRQK-IVHYDIKPESVLLDENFFPKAADFGL 127
               ++  G+ +E E     + I    + C QK IVH D+K E++LLD +   K ADFG 
Sbjct: 102 --DYLVAHGRXKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADXNIKIADFGF 159
Query: 128 AKLYNREHTHITSTGRRRTPGCEAPELWMPYSVT-QKCDVFSFGMLLFEVV 177
           +  +   +      G    P   APEL+        + DV+S G++L+ +V
Sbjct: 160 SNEFTFGNKLDAFCG---APPYAAPELFQGKKYDGPEVDVWSLGVILYTLV 207

>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285 Length = 331

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++  + + PF     Y+   K+ +G   L    V  +KG
Sbjct: 75  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 133
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFG AKL   E     + G +      
Sbjct: 134 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWM 190
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 191 ALESILHRIYTHQSDVWSYGVTVWELM 217

>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In A Putative Auto-Inhibition State Length = 340

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 19/110 (17%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT 139
           L +I VS  K + +LH   +  ++H D+KP +VL++     K  DFG++         + 
Sbjct: 155 LGKIAVSIVKALEHLHS--KLSVIHRDVKPSNVLINALGQVKMCDFGISGYL------VD 206
Query: 140 STGRRRTPGCE---APELWMP------YSVTQKCDVFSFGMLLFEVVGRR 180
           S  +    GC+   APE   P      YSV  K D++S G+ + E+   R
Sbjct: 207 SVAKTIDAGCKPYMAPERINPELNQKGYSV--KSDIWSLGITMIELAILR 254

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
           T +G+ YLH     +++H D+K  ++ L+++   K  DFGLA       T I   G R+ 
Sbjct: 151 TIQGVQYLHN---NRVIHRDLKLGNLFLNDDMDVKIGDFGLA-------TKIEFDGERKK 200
Query: 147 PGCEAPELWMPYSVTQK-----CDVFSFGMLLFEVV 177
             C  P    P  + +K      D++S G +L+ ++
Sbjct: 201 TLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLL 236

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 14/94 (14%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           KG+ YL     ++ VH D+   ++L++     K ADFGLAKL   +          R PG
Sbjct: 122 KGMEYLGS---RRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDXXVV----REPG 174
Query: 149 CEAPELW-MPYSV-----TQKCDVFSFGMLLFEV 176
            ++P  W  P S+     +++ DV+SFG++L+E+
Sbjct: 175 -QSPIFWYAPESLSDNIFSRQSDVWSFGVVLYEL 207

>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            +KG+A+L     +  +H D+   ++LL      K  DFGLA+    +  ++     R  
Sbjct: 177 VAKGMAFL---ASKNCIHRDLAARNILLTHGRITKICDFGLARHIKNDSNYVVKGNARLP 233
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               APE       T + DV+S+G+ L+E+
Sbjct: 234 VKWMAPESIFNCVYTFESDVWSYGIFLWEL 263

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
           T +G+ YLH     +++H D+K  ++ L+++   K  DFGLA       T I   G R+ 
Sbjct: 151 TIQGVQYLHN---NRVIHRDLKLGNLFLNDDMDVKIGDFGLA-------TKIEFDGERKK 200
Query: 147 PGCEAPELWMPYSVTQK-----CDVFSFGMLLFEVV 177
             C  P    P  + +K      D++S G +L+ ++
Sbjct: 201 DLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLL 236

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
           T +G+ YLH     +++H D+K  ++ L+++   K  DFGLA       T I   G R+ 
Sbjct: 151 TIQGVQYLHN---NRVIHRDLKLGNLFLNDDMDVKIGDFGLA-------TKIEFDGERKK 200
Query: 147 PGCEAPELWMPYSVTQK-----CDVFSFGMLLFEVV 177
             C  P    P  + +K      D++S G +L+ ++
Sbjct: 201 XLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLL 236

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 100 QKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMP-- 157
           Q+I+H D+KP+++LLDE+      DF +A +  RE    T  G   T    APE++    
Sbjct: 134 QRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTMAG---TKPYMAPEMFSSRK 190
Query: 158 ---YSVTQKCDVFSFGMLLFEVVGRRR 181
              YS     D +S G+  +E++  RR
Sbjct: 191 GAGYSFA--VDWWSLGVTAYELLRGRR 215

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL--DENFFP-KAADFGLAKLYNREHTHITSTGRRR 145
           + + Y H+     I+H D+KPE+VLL   EN  P K  DFG+A       + + + GR  
Sbjct: 141 EALRYCHD---NNIIHRDVKPENVLLASKENSAPVKLGDFGVA--IQLGESGLVAGGRVG 195
Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           TP   APE+       +  DV+  G++LF
Sbjct: 196 TPHFMAPEVVKREPYGKPVDVWGCGVILF 224

>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex Length = 329

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            +KG+A+L     +  +H D+   ++LL      K  DFGLA+    +  ++     R  
Sbjct: 170 VAKGMAFL---ASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLP 226
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               APE       T + DV+S+G+ L+E+
Sbjct: 227 VKWMAPESIFNCVYTFESDVWSYGIFLWEL 256

>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C- Kit Tyrosine Kinase Length = 331

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            +KG+A+L     +  +H D+   ++LL      K  DFGLA+    +  ++     R  
Sbjct: 172 VAKGMAFL---ASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLP 228
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               APE       T + DV+S+G+ L+E+
Sbjct: 229 VKWMAPESIFNCVYTFESDVWSYGIFLWEL 258

>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase Domain And A Mig6 Peptide Length = 324

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++    + PF     Y+   K+ +G   L    V  ++G
Sbjct: 68  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAEG 126
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFGLAKL   E     + G +      
Sbjct: 127 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 183
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 184 ALESILHRIYTHQSDVWSYGVTVWELM 210

>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal Sh3 Domain Length = 341

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 23  AMEMDKPIRFTSPQRMIAADNF---SNLVGSEDTETYIK--GFLAMGPFYLLCKKNILG- 76
           A++  KP   + P+ M   D+F    N + S D    I+  G +   P  ++ +   LG 
Sbjct: 44  AVKCLKPDVLSQPEAM---DDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGS 100
Query: 77  -------------FGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAA 123
                         G L    V  ++G+ YL     ++ +H D+   ++LL      K  
Sbjct: 101 LLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIG 157
Query: 124 DFGLAKLYNREHTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           DFGL +   +   H      R+ P    APE     + +   D + FG+ L+E+
Sbjct: 158 DFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEM 211

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 17/95 (17%)
Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           +  ++Y H    ++++H DIKPE++LL  N   K ADFG +         + +   RRT 
Sbjct: 122 ANALSYCHS---KRVIHRDIKPENLLLGSNGELKIADFGWS---------VHAPSSRRTT 169
Query: 148 GCEA-----PELWMPYSVTQKCDVFSFGMLLFEVV 177
            C       PE+       +K D++S G+L +E +
Sbjct: 170 LCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFL 204

>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C-kit Tyrosine Kinase Length = 313

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            +KG+A+L     +  +H D+   ++LL      K  DFGLA+    +  ++     R  
Sbjct: 154 VAKGMAFL---ASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLP 210
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               APE       T + DV+S+G+ L+E+
Sbjct: 211 VKWMAPESIFNCVYTFESDVWSYGIFLWEL 240

>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            +KG+A+L     +  +H D+   ++LL      K  DFGLA+    +  ++     R  
Sbjct: 177 VAKGMAFL---ASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLP 233
Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
               APE       T + DV+S+G+ L+E+
Sbjct: 234 VKWMAPESIFNCVYTFESDVWSYGIFLWEL 263

>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain Length = 277

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 23  AMEMDKPIRFTSPQRMIAADNF---SNLVGSEDTETYIK--GFLAMGPFYLLCKKNILG- 76
           A++  KP   + P+ M   D+F    N + S D    I+  G +   P  ++ +   LG 
Sbjct: 44  AVKCLKPDVLSQPEAM---DDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGS 100
Query: 77  -------------FGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAA 123
                         G L    V  ++G+ YL     ++ +H D+   ++LL      K  
Sbjct: 101 LLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIG 157
Query: 124 DFGLAKLYNREHTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           DFGL +   +   H      R+ P    APE     + +   D + FG+ L+E+
Sbjct: 158 DFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEM 211

>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor Length = 275

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 23  AMEMDKPIRFTSPQRMIAADNF---SNLVGSEDTETYIK--GFLAMGPFYLLCKKNILG- 76
           A++  KP   + P+ M   D+F    N + S D    I+  G +   P  ++ +   LG 
Sbjct: 40  AVKCLKPDVLSQPEAM---DDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGS 96
Query: 77  -------------FGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAA 123
                         G L    V  ++G+ YL     ++ +H D+   ++LL      K  
Sbjct: 97  LLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIG 153
Query: 124 DFGLAKLYNREHTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           DFGL +   +   H      R+ P    APE     + +   D + FG+ L+E+
Sbjct: 154 DFGLMRALPQNDDHXVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEM 207

>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEALAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
Query: 45  SNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVH 104
           S LVG  D    +  +LA G    +  +  +  GQ+  +     + + +LH     +++H
Sbjct: 86  SYLVG--DELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHS---NQVIH 140
Query: 105 YDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKC 164
            DIK +++LL  +   K  DFG       E +    +    TP   APE+    +   K 
Sbjct: 141 RDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK--RSXMVGTPYWMAPEVVTRKAYGPKV 198
Query: 165 DVFSFGMLLFEVV 177
           D++S G++  E++
Sbjct: 199 DIWSLGIMAIEMI 211

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH-THITSTGRRRTPG 148
           G+ YLH      I+H D+   ++LL  N   K ADFGLA      H  H T  G   TP 
Sbjct: 124 GMLYLHS---HGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCG---TPN 177
Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFE-VVGR 179
             +PE+    +   + DV+S G + +  ++GR
Sbjct: 178 YISPEIATRSAHGLESDVWSLGCMFYTLLIGR 209

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
Query: 45  SNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVH 104
           S LVG  D    +  +LA G    +  +  +  GQ+  +     + + +LH     +++H
Sbjct: 85  SYLVG--DELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHS---NQVIH 139
Query: 105 YDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKC 164
            DIK +++LL  +   K  DFG       E +    +    TP   APE+    +   K 
Sbjct: 140 RDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK--RSXMVGTPYWMAPEVVTRKAYGPKV 197
Query: 165 DVFSFGMLLFEVV 177
           D++S G++  E++
Sbjct: 198 DIWSLGIMAIEMI 210

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 45  SNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVH 104
           S LVG E     +  FL  G    +  +  L   Q+  +  +  + +AYLH    Q ++H
Sbjct: 110 SYLVGEE--LWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHA---QGVIH 164
Query: 105 YDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR----TPGCEAPELWMPYSV 160
            DIK +S+LL  +   K +DFG     +++        +R+    TP   APE+      
Sbjct: 165 RDIKSDSILLTLDGRVKLSDFGFCAQISKD------VPKRKXLVGTPYWMAPEVISRSLY 218
Query: 161 TQKCDVFSFGMLLFEVV 177
             + D++S G+++ E+V
Sbjct: 219 ATEVDIWSLGIMVIEMV 235

>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And Unphosphorylated Kinase Domains Of The Cdc42-Associated Tyrosine Kinase Ack1 Bound To Amp-Pcp Length = 291

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 23  AMEMDKPIRFTSPQRMIAADNF---SNLVGSEDTETYIK--GFLAMGPFYLLCKKNILG- 76
           A++  KP   + P+ M   D+F    N + S D    I+  G +   P  ++ +   LG 
Sbjct: 50  AVKCLKPDVLSQPEAM---DDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGS 106
Query: 77  -------------FGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAA 123
                         G L    V  ++G+ YL     ++ +H D+   ++LL      K  
Sbjct: 107 LLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIG 163
Query: 124 DFGLAKLYNREHTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           DFGL +   +   H      R+ P    APE     + +   D + FG+ L+E+
Sbjct: 164 DFGLMRALPQNDDHXVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEM 217

>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95 Length = 276

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 23  AMEMDKPIRFTSPQRMIAADNF---SNLVGSEDTETYIK--GFLAMGPFYLLCKKNILG- 76
           A++  KP   + P+ M   D+F    N + S D    I+  G +   P  ++ +   LG 
Sbjct: 40  AVKCLKPDVLSQPEAM---DDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGS 96
Query: 77  -------------FGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAA 123
                         G L    V  ++G+ YL     ++ +H D+   ++LL      K  
Sbjct: 97  LLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIG 153
Query: 124 DFGLAKLYNREHTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           DFGL +   +   H      R+ P    APE     + +   D + FG+ L+E+
Sbjct: 154 DFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEM 207

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+DE  + +  DFG AK        +       TP   AP
Sbjct: 143 YLHS---LDLIYRDLKPENLLIDEQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 194
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 195 EIILSKGYNKAVDWWALGVLIYEMAA 220

>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L  +K  L    L       S  +AYL     ++ VH DI   +VL+  N   K  DFG
Sbjct: 100 FLQVRKYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFG 156
Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           L++ Y  + T+  ++  +      APE       T   DV+ FG+ ++E++
Sbjct: 157 LSR-YMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEIL 206

>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-amino-1-(4- Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol Length = 273

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 23  AMEMDKPIRFTSPQRMIAADNF---SNLVGSEDTETYIK--GFLAMGPFYLLCKKNILG- 76
           A++  KP   + P+ M   D+F    N + S D    I+  G +   P  ++ +   LG 
Sbjct: 40  AVKCLKPDVLSQPEAM---DDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGS 96
Query: 77  -------------FGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAA 123
                         G L    V  ++G+ YL     ++ +H D+   ++LL      K  
Sbjct: 97  LLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIG 153
Query: 124 DFGLAKLYNREHTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           DFGL +   +   H      R+ P    APE     + +   D + FG+ L+E+
Sbjct: 154 DFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEM 207

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 116 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXG---T 169
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 116 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXG---T 169
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 117 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXG---T 170
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 171 LPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Pyrrolo[2,3- D]thiazole Length = 282

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L  +K  L    L       S  +AYL     ++ VH DI   +VL+  N   K  DFG
Sbjct: 103 FLQVRKYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFG 159
Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           L++ Y  + T+  ++  +      APE       T   DV+ FG+ ++E++
Sbjct: 160 LSR-YMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEIL 209

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 117 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCG---T 170
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 171 LPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 117 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCG---T 170
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 171 LPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 116 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCG---T 169
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 117 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCG---T 170
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 171 LPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak) Length = 281

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L  +K  L    L       S  +AYL     ++ VH DI   +VL+  N   K  DFG
Sbjct: 105 FLQVRKYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFG 161
Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           L++ Y  + T+  ++  +      APE       T   DV+ FG+ ++E++
Sbjct: 162 LSR-YMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEIL 211

>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative Length = 281

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L  +K  L    L       S  +AYL     ++ VH DI   +VL+  N   K  DFG
Sbjct: 102 FLQVRKYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFG 158
Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           L++ Y  + T+  ++  +      APE       T   DV+ FG+ ++E++
Sbjct: 159 LSR-YMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEIL 208

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 116 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCG---T 169
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of The Tyrosine Kinase Ack1 Length = 291

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 23  AMEMDKPIRFTSPQRMIAADNF---SNLVGSEDTETYIK--GFLAMGPFYLLCKKNILG- 76
           A++  KP   + P+ M   D+F    N + S D    I+  G +   P  ++ +   LG 
Sbjct: 50  AVKCLKPDVLSQPEAM---DDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGS 106
Query: 77  -------------FGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAA 123
                         G L    V  ++G+ YL     ++ +H D+   ++LL      K  
Sbjct: 107 LLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIG 163
Query: 124 DFGLAKLYNREHTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           DFGL +   +   H      R+ P    APE     + +   D + FG+ L+E+
Sbjct: 164 DFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEM 217

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 116 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXG---T 169
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 117 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCG---T 170
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 171 LPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 115 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCG---T 168
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 169 LPYVAPELLKRREFHAEPVDVWSCGIVL 196

>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In Complex With Novel Allosteric Inhibitor Length = 304

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L  +K  L    L       S  +AYL     ++ VH DI   +VL+  N   K  DFG
Sbjct: 128 FLQVRKYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFG 184
Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           L++ Y  + T+  ++  +      APE       T   DV+ FG+ ++E++
Sbjct: 185 LSR-YMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEIL 234

>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A Methanesulfonamide Diaminopyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L  +K  L    L       S  +AYL     ++ VH DI   +VL+  N   K  DFG
Sbjct: 97  FLQVRKYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFG 153
Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           L++ Y  + T+  ++  +      APE       T   DV+ FG+ ++E++
Sbjct: 154 LSR-YMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEIL 203

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 116 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCG---T 169
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And Kinase Domains Of Focal Adhesion Kinase. Length = 276

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L  +K  L    L       S  +AYL     ++ VH DI   +VL+  N   K  DFG
Sbjct: 100 FLQVRKYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFG 156
Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           L++ Y  + T+  ++  +      APE       T   DV+ FG+ ++E++
Sbjct: 157 LSR-YMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEIL 206

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 116 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXG---T 169
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 9/134 (6%)
Query: 45  SNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVH 104
           S LVG  D    +  +LA G    +  +  +  GQ+  +     + + +LH     +++H
Sbjct: 86  SYLVG--DELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHS---NQVIH 140
Query: 105 YDIKPESVLLDENFFPKAADFGL-AKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQK 163
            +IK +++LL  +   K  DFG  A++   +    T  G   TP   APE+    +   K
Sbjct: 141 RNIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVG---TPYWMAPEVVTRKAYGPK 197
Query: 164 CDVFSFGMLLFEVV 177
            D++S G++  E++
Sbjct: 198 VDIWSLGIMAIEMI 211

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 116 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCG---T 169
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 116 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCG---T 169
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 117 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCG---T 170
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 171 LPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 116 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCG---T 169
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 116 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCG---T 169
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
Query: 45  SNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVH 104
           S LVG  D    +  +LA G    +  +  +  GQ+  +     + + +LH     +++H
Sbjct: 85  SYLVG--DELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHS---NQVIH 139
Query: 105 YDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKC 164
            DIK +++LL  +   K  DFG       E +    +    TP   APE+    +   K 
Sbjct: 140 RDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK--RSEMVGTPYWMAPEVVTRKAYGPKV 197
Query: 165 DVFSFGMLLFEVV 177
           D++S G++  E++
Sbjct: 198 DIWSLGIMAIEMI 210

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLAG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 116 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCG---T 169
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 6 (Mapk6) Length = 320

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 83/206 (40%), Gaps = 34/206 (16%)
Query: 3   KPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTETYIKGFLA 62
           KP   G    +   +D   D     K I  T PQ +  A     ++   D +  +K F  
Sbjct: 17  KPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEI 76
Query: 63  MGP-----------------FYLLCK------KNILGFGQLREIEV-----STSKGIAYL 94
           +GP                  Y++ +       N+L  G L E           +G+ Y+
Sbjct: 77  LGPSGSQLTDDVGSLTELNSVYIVQEYMETDLANVLEQGPLLEEHARLFMYQLLRGLKYI 136
Query: 95  HEECRQKIVHYDIKPESVLLD-ENFFPKAADFGLAKLYNREHTHITSTGR-RRTPGCEAP 152
           H      ++H D+KP ++ ++ E+   K  DFGLA++ +  ++H         T    +P
Sbjct: 137 HS---ANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSP 193
Query: 153 ELWM-PYSVTQKCDVFSFGMLLFEVV 177
            L + P + T+  D+++ G +  E++
Sbjct: 194 RLLLSPNNYTKAIDMWAAGCIFAEML 219

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 117 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCG---T 170
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 171 LPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 117 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCG---T 170
Query: 147 PGCEAPELWMPYSV-TQKCDVFSFGMLL 173
               APEL        +  DV+S G++L
Sbjct: 171 LPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++++D+  + +  DFGLAK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLMIDQQGYIQVTDFGLAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In Complex With Amppnp Length = 334

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++    + PF     Y+   K+ +G   L    V  +KG
Sbjct: 78  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 136
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFG AKL   E     + G +      
Sbjct: 137 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWM 193
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 194 ALESILHRIYTHQSDVWSYGVTVWELM 220

>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Length = 355

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           GI +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T   
Sbjct: 138 GIKHLHSA---GIIHRDLKPSNIVVKSDXTLKILDFGLARTAG---TSFMMTPYVVTRYY 191
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
            APE+ +     +  D++S G ++ E+V       K +  G+++  +W +
Sbjct: 192 RAPEVILGMGYKENVDIWSVGCIMGEMVR-----HKILFPGRDYIDQWNK 236

>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor, Sr- 3451 Length = 353

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           GI +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T   
Sbjct: 138 GIKHLHSA---GIIHRDLKPSNIVVKSDXTLKILDFGLARTAG---TSFMMTPYVVTRYY 191
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
            APE+ +     +  D++S G ++ E+V       K +  G+++  +W +
Sbjct: 192 RAPEVILGMGYKENVDIWSVGCIMGEMVR-----HKILFPGRDYIDQWNK 236

>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182 Length = 353

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 42  DNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQK 101
           D+F N       E YI   L     + +    +L    ++     T + +  LH      
Sbjct: 81  DSFENF-----NEVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHG---SN 132
Query: 102 IVHYDIKPESVLLDENFFPKAADFGLAKLY------NREHTHITS--TGRRRTPGCEAPE 153
           ++H D+KP ++L++ N   K  DFGLA++       N E T   S  T    T    APE
Sbjct: 133 VIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMTEXVATRWYRAPE 192
Query: 154 LWMPYS-VTQKCDVFSFGMLLFEVVGRR 180
           + +  +  ++  DV+S G +L E+  RR
Sbjct: 193 VMLTSAKYSRAMDVWSCGCILAELFLRR 220

>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic Mutant L858r Egfr Kinase Domain Length = 329

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++    + PF     Y+   K+ +G   L    V  +KG
Sbjct: 73  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 131
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFG AKL   E     + G +      
Sbjct: 132 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWM 188
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 189 ALESILHRIYTHQSDVWSYGVTVWELM 215

>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In Complex With Aee788 Length = 327

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 11/147 (7%)
Query: 38  MIAADN--FSNLVGSEDTETYIKGFLAMGPF-----YLLCKKNILGFGQLREIEVSTSKG 90
           M + DN     L+G   T T ++    + PF     Y+   K+ +G   L    V  +KG
Sbjct: 71  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 129
Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           + YL +   +++VH D+   +VL+      K  DFG AKL   E     + G +      
Sbjct: 130 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWM 186
Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVV 177
           A E  +    T + DV+S+G+ ++E++
Sbjct: 187 ALESILHRIYTHQSDVWSYGVTVWELM 213

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 78  GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NRE 134
           G LR I    + G+ YL +      VH  +   ++L++ N   K +DFGL++       +
Sbjct: 113 GMLRGI----AAGMKYLAD---MNYVHRALAARNILVNSNLVCKVSDFGLSRFLEDDTSD 165
Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            T+ ++ G +      APE       T   DV+S+G++++EV+
Sbjct: 166 PTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVM 208

>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil Length = 433

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 103 VHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPY---- 158
           VH DIKP++VLLD N   + ADFG     N + T + S+    TP   +PE+        
Sbjct: 213 VHRDIKPDNVLLDVNGHIRLADFGSCLKMNDDGT-VQSSVAVGTPDYISPEILQAMEDGM 271
Query: 159 -SVTQKCDVFSFGMLLFEVV 177
                +CD +S G+ ++E++
Sbjct: 272 GKYGPECDWWSLGVCMYEML 291

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++++D+  + K  DFG AK        +       TP   AP
Sbjct: 157 YLHS---LDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKGRTWXLCG-----TPEYLAP 208
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 209 EIILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++++D+  + K  DFG AK        +       TP   AP
Sbjct: 157 YLHS---LDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKGRTWXLCG-----TPEYLAP 208
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 209 EIILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++++D+  + K  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++++D+  + K  DFG AK        +       TP   AP
Sbjct: 157 YLHS---LDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKGRTWXLCG-----TPEYLAP 208
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 209 EIILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            + G+ YL  +C    +H D+   + L+ E    K +DFG+++    +  +  S G R+ 
Sbjct: 222 AAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSR-EEADGVYAASGGLRQV 277
Query: 147 P-GCEAPELWMPYSVTQKCDVFSFGMLLFE 175
           P    APE       + + DV+SFG+LL+E
Sbjct: 278 PVKWTAPEALNYGRYSSESDVWSFGILLWE 307

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++++D+  + K  DFG AK        +       TP   AP
Sbjct: 157 YLHS---LDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKGRTWXLCG-----TPEYLAP 208
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 209 EIILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLXG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7 Length = 353

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 42  DNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQK 101
           D+F N       E YI   L     + +    +L    ++     T + +  LH      
Sbjct: 81  DSFENF-----NEVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHG---SN 132
Query: 102 IVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE--------APE 153
           ++H D+KP ++L++ N   K  DFGLA++ +      +    +++   E        APE
Sbjct: 133 VIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPE 192
Query: 154 LWMPYS-VTQKCDVFSFGMLLFEVVGRR 180
           + +  +  ++  DV+S G +L E+  RR
Sbjct: 193 VMLTSAKYSRAMDVWSCGCILAELFLRR 220

>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains Length = 656

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 57  IKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE 116
           ++ FL +  F L     IL   QL       S  +AYL     ++ VH DI   +VL+  
Sbjct: 477 LRSFLQVRKFSLDLASLILYAYQL-------STALAYLES---KRFVHRDIAARNVLVSS 526
Query: 117 NFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           N   K  DFGL++ Y  + T+  ++  +      APE       T   DV+ FG+ ++E+
Sbjct: 527 NDCVKLGDFGLSR-YMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEI 585
Query: 177 V 177
           +
Sbjct: 586 L 586

>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1 Length = 415

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 103 VHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPY---- 158
           VH DIKP++VLLD N   + ADFG     N + T + S+    TP   +PE+        
Sbjct: 197 VHRDIKPDNVLLDVNGHIRLADFGSCLKMNDDGT-VQSSVAVGTPDYISPEILQAMEDGM 255
Query: 159 -SVTQKCDVFSFGMLLFEVV 177
                +CD +S G+ ++E++
Sbjct: 256 GKYGPECDWWSLGVCMYEML 275

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++++D+  + K  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           GI +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T   
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDXTLKILDFGLARTAG---TSFMMTPYVVTRYY 191
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
            APE+ +     +  D++S G ++ E+V       K +  G+++  +W +
Sbjct: 192 RAPEVILGMGYKENVDIWSVGCIMGEMVRH-----KILFPGRDYIDQWNK 236

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 43  NFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSK----------GIA 92
           N  N++G  +  T  K        Y++ +       Q+ ++E+   +          GI 
Sbjct: 81  NHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDHERMSYLLYQMLVGIK 140
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T    AP
Sbjct: 141 HLHSAG---IIHRDLKPSNIVVKSDATLKILDFGLARTAG---TSFMMTPYVVTRYYRAP 194
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVV 177
           E+ +     +  D++S G+++ E++
Sbjct: 195 EVILGMGYKENVDIWSVGVIMGEMI 219

>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3 Length = 353

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 42  DNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQK 101
           D+F N       E YI   L     + +    +L    ++     T + +  LH      
Sbjct: 81  DSFENF-----NEVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHG---SN 132
Query: 102 IVHYDIKPESVLLDENFFPKAADFGLAKLY------NREHTHITS--TGRRRTPGCEAPE 153
           ++H D+KP ++L++ N   K  DFGLA++       N E T   S  T    T    APE
Sbjct: 133 VIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMTEYVATRWYRAPE 192
Query: 154 LWMPYS-VTQKCDVFSFGMLLFEVVGRR 180
           + +  +  ++  DV+S G +L E+  RR
Sbjct: 193 VMLTSAKYSRAMDVWSCGCILAELFLRR 220

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           GI +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T   
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDXTLKILDFGLARTAG---TSFMMTPYVVTRYY 191
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
            APE+ +     +  D++S G ++ E+V       K +  G+++  +W +
Sbjct: 192 RAPEVILGMGYKENVDIWSVGCIMGEMVRH-----KILFPGRDYIDQWNK 236

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 43  NFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSK----------GIA 92
           N  N++G  +  T  K        Y++ +       Q+ ++E+   +          GI 
Sbjct: 81  NHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDHERMSYLLYQMLVGIK 140
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T    AP
Sbjct: 141 HLHSAG---IIHRDLKPSNIVVKSDATLKILDFGLARTAG---TSFMMTPYVVTRYYRAP 194
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVV 177
           E+ +     +  D++S G+++ E++
Sbjct: 195 EVILGMGYKENVDIWSVGVIMGEMI 219

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHI 138
           L ++ ++  +G+AYL E  + +I+H D+KP ++L++     K  DFG++ +L +      
Sbjct: 116 LGKVSIAVLRGLAYLRE--KHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSF 173
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV-VGR 179
             T         APE       + + D++S G+ L E+ VGR
Sbjct: 174 VGTRSYM-----APERLQGTHYSVQSDIWSMGLSLVELAVGR 210

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHI 138
           L ++ ++  KG+ YL E  + KI+H D+KP ++L++     K  DFG++ +L +      
Sbjct: 125 LGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSF 182
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV-VGR 179
             T    +     PE       + + D++S G+ L E+ VGR
Sbjct: 183 VGTRSYMS-----PERLQGTHYSVQSDIWSMGLSLVEMAVGR 219

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 157 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 208
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 209 EIILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk Inhibitor For The Prevention Of Ischemia-Reperfusion Injury Length = 464

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           GI +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T   
Sbjct: 176 GIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG---TSFMMTPYVVTRYY 229
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
            APE+ +     +  D++S G ++ E+V       K +  G+++  +W +
Sbjct: 230 RAPEVILGMGYKENVDIWSVGCIMGEMVRH-----KILFPGRDYIDQWNK 274

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine Inhibitor Length = 369

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 21/167 (12%)
Query: 43  NFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSK----------GIA 92
           N  N++G  +  T  K        Y++ +       Q+ ++E+   +          GI 
Sbjct: 86  NHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIK 145
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T    AP
Sbjct: 146 HLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAG---TSFMMTPYVVTRYYRAP 199
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
           E+ +     +  D++S G ++ E+V       K +  G+++  +W +
Sbjct: 200 EVILGMGYKENVDLWSVGCIMGEMV-----CHKILFPGRDYIDQWNK 241

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           GI +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T   
Sbjct: 131 GIKHLHSA---GIIHRDLKPSNIVVKSDXTLKILDFGLARTAG---TSFMMTPYVVTRYY 184
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
            APE+ +     +  D++S G ++ E+V       K +  G+++  +W +
Sbjct: 185 RAPEVILGMGYKENVDIWSVGCIMGEMVRH-----KILFPGRDYIDQWNK 229

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK    +    T  G   TP   AP
Sbjct: 177 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAK--RVKGATWTLCG---TPEYLAP 228
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 229 EIILSKGYNKAVDWWALGVLIYEMAA 254

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 151 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 202
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 203 EIILSKGYNKAVDWWALGVLIYEMAA 228

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 157 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 208
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 209 EIILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3- Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide Length = 365

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           GI +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T   
Sbjct: 139 GIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG---TSFMMTPYVVTRYY 192
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
            APE+ +     +  D++S G ++ E+V       K +  G+++  +W +
Sbjct: 193 RAPEVILGMGYKENVDIWSVGCIMGEMVRH-----KILFPGRDYIDQWNK 237

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 157 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 208
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 209 EIILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 177 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 228
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 229 EIILSKGYNKAVDWWALGVLIYEMAA 254

>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With N-{3-Cyano-6-[3-(1- Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2, 3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide Length = 364

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           GI +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T   
Sbjct: 138 GIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG---TSFMMTPYVVTRYY 191
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
            APE+ +     +  D++S G ++ E+V       K +  G+++  +W +
Sbjct: 192 RAPEVILGMGYKENVDIWSVGCIMGEMVRH-----KILFPGRDYIDQWNK 236

>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole- Pyrimidine Inhibitor Length = 364

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           GI +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T   
Sbjct: 139 GIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG---TSFMMTPYVVTRYY 192
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
            APE+ +     +  D++S G ++ E+V       K +  G+++  +W +
Sbjct: 193 RAPEVILGMGYKENVDIWSVGCIMGEMVRH-----KILFPGRDYIDQWNK 237

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 177 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 228
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 229 EIILSKGYNKAVDWWALGVLIYEMAA 254

>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor Length = 358

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 21/167 (12%)
Query: 43  NFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSK----------GIA 92
           N  N++G  +  T  K        Y++ +       Q+ ++E+   +          GI 
Sbjct: 75  NHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIK 134
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T    AP
Sbjct: 135 HLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAG---TSFMMTPYVVTRYYRAP 188
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
           E+ +     +  D++S G ++ E+V       K +  G+++  +W +
Sbjct: 189 EVILGMGYKENVDLWSVGCIMGEMV-----CHKILFPGRDYIDQWNK 230

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 157 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 208
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 209 EIILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone Morp Protein Receptor Type-1b (Bmpr1b) In Complex With Fkbp12 An 193189 Length = 337

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 39  IAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEEC 98
           IAAD      GS      I  +   G  Y   K   L    + ++  S+  G+ +LH E 
Sbjct: 97  IAADIKGT--GSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEI 154
Query: 99  -----RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-----TSTGRRRTPG 148
                +  I H D+K +++L+ +N     AD GLA  +  +   +     T  G +R   
Sbjct: 155 FSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMP 214
Query: 149 CEAPELWMPYSVTQK---CDVFSFGMLLFEVVGR 179
            E  +  +  +  Q     D++SFG++L+EV  R
Sbjct: 215 PEVLDESLNRNHFQSYIMADMYSFGLILWEVARR 248

>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3 Length = 356

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           GI +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T   
Sbjct: 132 GIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG---TSFMMTPYVVTRYY 185
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
            APE+ +     +  D++S G ++ E+V       K +  G+++  +W +
Sbjct: 186 RAPEVILGMGYKENVDIWSVGCIMGEMVRH-----KILFPGRDYIDQWNK 230

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 157 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 208
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 209 EIILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And Thiazole Based Inhibitors Of Jnk For The Treatment Of Neurodegenerative Diseases Length = 362

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           GI +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T   
Sbjct: 137 GIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG---TSFMMTPYVVTRYY 190
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
            APE+ +     +  D++S G ++ E+V       K +  G+++  +W +
Sbjct: 191 RAPEVILGMGYKENVDIWSVGCIMGEMVRH-----KILFPGRDYIDQWNK 235

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 157 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 208
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 209 EIILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious Tri-Substituted Thiophene Based Jnk Inhibitor Length = 363

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           GI +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T   
Sbjct: 138 GIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG---TSFMMTPYVVTRYY 191
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
            APE+ +     +  D++S G ++ E+V       K +  G+++  +W +
Sbjct: 192 RAPEVILGMGYKENVDIWSVGCIMGEMVRH-----KILFPGRDYIDQWNK 236

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3 Length = 355

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           GI +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T   
Sbjct: 131 GIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG---TSFMMTPYVVTRYY 184
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
            APE+ +     +  D++S G ++ E+V       K +  G+++  +W +
Sbjct: 185 RAPEVILGMGYKENVDIWSVGCIMGEMVRH-----KILFPGRDYIDQWNK 229

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide Length = 356

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           GI +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T   
Sbjct: 132 GIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG---TSFMMTPYVVTRYY 185
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
            APE+ +     +  D++S G ++ E+V       K +  G+++  +W +
Sbjct: 186 RAPEVILGMGYKENVDIWSVGCIMGEMVRH-----KILFPGRDYIDQWNK 230

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHI 138
           L ++ ++  KG+ YL E  + KI+H D+KP ++L++     K  DFG++ +L +      
Sbjct: 133 LGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSF 190
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV-VGR 179
             T    +     PE       + + D++S G+ L E+ VGR
Sbjct: 191 VGTRSYMS-----PERLQGTHYSVQSDIWSMGLSLVEMAVGR 227

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHI 138
           L ++ ++  KG+ YL E  + KI+H D+KP ++L++     K  DFG++ +L +      
Sbjct: 106 LGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSF 163
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV-VGR 179
             T    +     PE       + + D++S G+ L E+ VGR
Sbjct: 164 VGTRSYMS-----PERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHI 138
           L ++ ++  KG+ YL E  + KI+H D+KP ++L++     K  DFG++ +L +      
Sbjct: 106 LGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSF 163
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV-VGR 179
             T    +     PE       + + D++S G+ L E+ VGR
Sbjct: 164 VGTRSYMS-----PERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d) Length = 290

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 25/124 (20%)
Query: 72  KNILGFGQ------LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           K ++  GQ      L +I VS  K + +LH   +  ++H D+KP +VL++     K  DF
Sbjct: 97  KQVIDKGQTIPEDILGKIAVSIVKALEHLHS--KLSVIHRDVKPSNVLINALGQVKMCDF 154
Query: 126 GLAKLYNREHTHITSTGRRRTPGCE---APELWMP------YSVTQKCDVFSFGMLLFEV 176
           G++         +    +    GC+   APE   P      YSV  K D++S G+ + E+
Sbjct: 155 GISGYL------VDDVAKDIDAGCKPYMAPERINPELNQKGYSV--KSDIWSLGITMIEL 206
Query: 177 VGRR 180
              R
Sbjct: 207 AILR 210

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHI 138
           L ++ ++  KG+ YL E  + KI+H D+KP ++L++     K  DFG++ +L +      
Sbjct: 168 LGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSF 225
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV-VGR 179
             T    +     PE       + + D++S G+ L E+ VGR
Sbjct: 226 VGTRSYMS-----PERLQGTHYSVQSDIWSMGLSLVEMAVGR 262

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 149 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 200
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 201 EIILSKGYNKAVDWWALGVLIYEMAA 226

>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp Length = 423

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           GI +LH      I+H D+KP ++++  +   K  DFGLA+      T    T    T   
Sbjct: 176 GIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG---TSFMMTPYVVTRYY 229
Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
            APE+ +     +  D++S G ++ E+V       K +  G+++  +W +
Sbjct: 230 RAPEVILGMGYKENVDIWSVGCIMGEMVRH-----KILFPGRDYIDQWNK 274

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHI 138
           L ++ ++  KG+ YL E  + KI+H D+KP ++L++     K  DFG++ +L +      
Sbjct: 109 LGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDEMANEF 166
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV-VGR 179
             T    +     PE       + + D++S G+ L E+ VGR
Sbjct: 167 VGTRSYMS-----PERLQGTHYSVQSDIWSMGLSLVEMAVGR 203

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 149 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 200
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 201 EIILSKGYNKAVDWWALGVLIYEMAA 226

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           +G+A+ HE    KI+H D+KP+++L+++    K  DFGLA+ +       T +    T  
Sbjct: 119 QGLAFCHE---NKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVN--TFSSEVVTLW 173
Query: 149 CEAPELWM-PYSVTQKCDVFSFGMLLFEVV 177
             AP++ M   + +   D++S G +L E++
Sbjct: 174 YRAPDVLMGSRTYSTSIDIWSCGCILAEMI 203

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 157 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCG-----TPEYLAP 208
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 209 EIILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 57  IKGFLAMGPF--YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL 114
           I  FL  G    YL   K  +   +L +      KG+ YL     ++ +H D+   ++L+
Sbjct: 94  IMEFLPYGSLREYLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILV 150
Query: 115 DENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELW-MPYSVTQK-----CDVFS 168
           +     K  DFGL K+  ++        + + PG E+P  W  P S+T+       DV+S
Sbjct: 151 ENENRVKIGDFGLTKVLPQD----KEXXKVKEPG-ESPIFWYAPESLTESKFSVASDVWS 205
Query: 169 FGMLLFEV 176
           FG++L+E+
Sbjct: 206 FGVVLYEL 213

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHI 138
           L ++ ++  KG+ YL E  + KI+H D+KP ++L++     K  DFG++ +L +      
Sbjct: 106 LGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSF 163
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV-VGR 179
             T    +     PE       + + D++S G+ L E+ VGR
Sbjct: 164 VGTRSYMS-----PERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHI 138
           L ++ ++  KG+ YL E  + KI+H D+KP ++L++     K  DFG++ +L +      
Sbjct: 106 LGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSF 163
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV-VGR 179
             T    +     PE       + + D++S G+ L E+ VGR
Sbjct: 164 VGTRSYMS-----PERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 11/90 (12%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLA-KLYNREHTHITSTGRR 144
           + IAY H      IVH ++KPE++LL    +    K ADFGLA ++ + E  H    G  
Sbjct: 139 ESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWH----GFA 191
Query: 145 RTPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
            TPG  +PE+      ++  D+++ G++L+
Sbjct: 192 GTPGYLSPEVLKKDPYSKPVDIWACGVILY 221

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHI 138
           L ++ ++  KG+ YL E  + KI+H D+KP ++L++     K  DFG++ +L +      
Sbjct: 106 LGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSF 163
Query: 139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV-VGR 179
             T    +     PE       + + D++S G+ L E+ VGR
Sbjct: 164 VGTRSYMS-----PERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n Inactivating Mutant In Apo Form Length = 303

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           + ++Y+H    Q I+H ++KP ++ +DE+   K  DFGLAK  +R    I     +  PG
Sbjct: 127 EALSYIHS---QGIIHRNLKPXNIFIDESRNVKIGDFGLAKNVHRS-LDILKLDSQNLPG 182
Query: 149 CE-------APELWMPYSV-------TQKCDVFSFGMLLFEVV 177
                        ++   V        +K D +S G++ FE +
Sbjct: 183 SSDNLTSAIGTAXYVATEVLDGTGHYNEKIDXYSLGIIFFEXI 225

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRR-RT 146
           +KG+ Y+H    +K+++ D+KP ++ L +    K  DFGL        T + + G+R R+
Sbjct: 132 TKGVDYIHS---KKLINRDLKPSNIFLVDTKQVKIGDFGLV-------TSLKNDGKRXRS 181
Query: 147 PGC---EAPELWMPYSVTQKCDVFSFGMLLFEVV 177
            G     +PE        ++ D+++ G++L E++
Sbjct: 182 KGTLRYMSPEQISSQDYGKEVDLYALGLILAELL 215

>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The Kinase Domain Of Focal Adhesion Kinase With A Phosphorylated Activation Loop Length = 276

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L  +K  L    L       S  +AYL     ++ VH DI   +VL+  N   K  DFG
Sbjct: 100 FLQVRKFSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFG 156
Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           L++ Y  + T   ++  +      APE       T   DV+ FG+ ++E++
Sbjct: 157 LSR-YMEDSTXXKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEIL 206

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 142 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCG-----TPEYLAP 193
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 194 EIILSKGYNKAVDWWALGVLIYEMAA 219

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           +  ++Y H    ++++H DIKPE++LL      K ADFG +         + +   RRT 
Sbjct: 135 ANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWS---------VHAPSSRRTT 182
Query: 148 GCEA-----PELWMPYSVTQKCDVFSFGMLLFE-VVGR 179
            C       PE+       +K D++S G+L +E +VG+
Sbjct: 183 LCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 220

>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor Length = 353

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 102 IVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL--WMPYS 159
           I++ D+K ++V+LD     K ADFG+ K        +T+     TP   APE+  + PY 
Sbjct: 142 IIYRDLKLDNVMLDSEGHIKIADFGMCK--ENIWDGVTTKXFCGTPDYIAPEIIAYQPYG 199
Query: 160 VTQKCDVFSFGMLLFEVVGRRRNLEKE 186
             +  D ++FG+LL+E++  +   E E
Sbjct: 200 --KSVDWWAFGVLLYEMLAGQAPFEGE 224

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK--LYNREHTHITSTGRRR 145
           S  + +LH+   + I++ D+KPE+++L+     K  DFGL K  +++   TH T  G   
Sbjct: 131 SMALGHLHQ---KGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTH-TFCG--- 183
Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           T    APE+ M     +  D +S G L+++++
Sbjct: 184 TIEYMAPEILMRSGHNRAVDWWSLGALMYDML 215

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 87  TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            + G+ YL  +C    +H D+   + L+ E    K +DFG+++    +     S G R+ 
Sbjct: 222 AAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSR-EEADGVXAASGGLRQV 277
Query: 147 P-GCEAPELWMPYSVTQKCDVFSFGMLLFE 175
           P    APE       + + DV+SFG+LL+E
Sbjct: 278 PVKWTAPEALNYGRYSSESDVWSFGILLWE 307

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           +  ++Y H    ++++H DIKPE++LL      K ADFG +         + +   RRT 
Sbjct: 123 ANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWS---------VHAPSSRRTT 170
Query: 148 GCEAPELWMPYSV-----TQKCDVFSFGMLLFE-VVGR 179
            C   +   P  +      +K D++S G+L +E +VG+
Sbjct: 171 LCGTLDYLPPEXIEGRXHDEKVDLWSLGVLCYEFLVGK 208

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           +  ++Y H    ++++H DIKPE++LL      K ADFG +         + +   RRT 
Sbjct: 123 ANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWS---------VHAPSSRRTT 170
Query: 148 GCEA-----PELWMPYSVTQKCDVFSFGMLLFE-VVGR 179
            C       PE+       +K D++S G+L +E +VG+
Sbjct: 171 LCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 208

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++++D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLMIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++E+  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           +  ++Y H    ++++H DIKPE++LL      K ADFG +         + +   RRT 
Sbjct: 123 ANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWS---------VHAPSSRRTT 170
Query: 148 GCEA-----PELWMPYSVTQKCDVFSFGMLLFE-VVGR 179
            C       PE+       +K D++S G+L +E +VG+
Sbjct: 171 LCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 208

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           +  ++Y H    ++++H DIKPE++LL      K ADFG +         + +   RRT 
Sbjct: 121 ANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWS---------VHAPSSRRTT 168
Query: 148 GCEA-----PELWMPYSVTQKCDVFSFGMLLFE-VVGR 179
            C       PE+       +K D++S G+L +E +VG+
Sbjct: 169 LCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 206

>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Length = 370

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 21/167 (12%)
Query: 43  NFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSK----------GIA 92
           N  N++G  +  T  K        Y++ +       Q+ ++E+   +          GI 
Sbjct: 81  NHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIK 140
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           +LH      I+H D+KP ++++  +   K  DFGLA+      T         T    AP
Sbjct: 141 HLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAG---TSFMMEPEVVTRYYRAP 194
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
           E+ +     +  D++S G ++ E+V       K +  G+++  +W +
Sbjct: 195 EVILGMGYKENVDIWSVGCIMGEMV-----CHKILFPGRDYIDQWNK 236

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           +  ++Y H    ++++H DIKPE++LL      K ADFG +         + +   RRT 
Sbjct: 144 ANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWS---------VHAPSSRRTT 191
Query: 148 GCEA-----PELWMPYSVTQKCDVFSFGMLLFE-VVGR 179
            C       PE+       +K D++S G+L +E +VG+
Sbjct: 192 LCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 229

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 93  YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP 152
           YLH      +++ D+KPE++L+D+  + +  DFG AK        +       TP   AP
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCG-----TPEYLAP 207
Query: 153 ELWMPYSVTQKCDVFSFGMLLFEVVG 178
           E+ +     +  D ++ G+L++++  
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYQMAA 233

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 17/95 (17%)
Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           +  ++Y H    ++++H DIKPE++LL  N   K ADFG +         + +   RR  
Sbjct: 122 ANALSYCHS---KRVIHRDIKPENLLLGSNGELKIADFGWS---------VHAPSSRRDT 169
Query: 148 GCEA-----PELWMPYSVTQKCDVFSFGMLLFEVV 177
            C       PE+       +K D++S G+L +E +
Sbjct: 170 LCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFL 204

>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue Length = 348

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 59  GFLAMGPFYLLCKKNILGFGQLREIEV---STSKGIAYLHEECRQKIVHYDIKPESVLLD 115
             L    ++ +  KN   F  ++ I+    S     +Y+H E  + I H D+KP ++L+D
Sbjct: 129 SILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNE--KNICHRDVKPSNILMD 186
Query: 116 ENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQ--KCDVFSFGMLL 173
           +N   K +DFG ++    +       G R T     PE +   S     K D++S G+ L
Sbjct: 187 KNGRVKLSDFGESEYMVDKKIK----GSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICL 242
Query: 174 F 174
           +
Sbjct: 243 Y 243

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           F+ L ++ +    + R         + YLH E  + +V+ D+K E+++LD++   K  DF
Sbjct: 239 FFHLSRERVFSEDRARFYGAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDF 296
Query: 126 GLAKLYNRE-HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
           GL K   ++  T  T  G   TP   APE+       +  D +  G++++E++  R
Sbjct: 297 GLCKEGIKDGATMKTFCG---TPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 349

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	4e-38
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	4e-30
3soc_A	322	Activin receptor type-2A; structural genomics cons	4e-28
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	4e-26
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	2e-23
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	4e-22
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	8e-22
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	1e-21
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-21
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	7e-21
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	1e-20
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	1e-20
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-20
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-20
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	5e-20
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-19
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	1e-18
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	9e-18
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	6e-17
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-16
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-15
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	5e-15
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	6e-15
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	9e-15
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	1e-14
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-14
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	2e-14
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	3e-14
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	3e-14
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	5e-14
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	5e-14
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	6e-14
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	6e-14
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	7e-14
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	7e-14
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	8e-14
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	8e-14
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	8e-14
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	1e-13
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	1e-13
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	1e-13
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	2e-13
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	2e-13
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	2e-13
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	2e-13
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	2e-13
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	3e-13
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	4e-13
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	4e-13
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	4e-13
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	4e-13
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	5e-13
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	5e-13
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	6e-13
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	6e-13
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	8e-13
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	8e-13
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	8e-13
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	8e-13
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	9e-13
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	9e-13
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	1e-12
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	1e-12
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	1e-12
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-12
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	1e-12
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-12
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	2e-12
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	2e-12
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	2e-12
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-12
3aln_A	327	Dual specificity mitogen-activated protein kinase;	2e-12
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	2e-12
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	3e-12
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	3e-12
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	4e-12
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	5e-12
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	7e-12
2dyl_A	318	Dual specificity mitogen-activated protein kinase	7e-12
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	7e-12
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	8e-12
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	8e-12
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	9e-12
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	1e-11
3ork_A	311	Serine/threonine protein kinase; structural genomi	1e-11
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	1e-11
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	1e-11
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	1e-11
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	1e-11
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	1e-11
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	2e-11
3an0_A	340	Dual specificity mitogen-activated protein kinase;	2e-11
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	2e-11
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	2e-11
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	3e-11
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	3e-11
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	3e-11
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	3e-11
3bhy_A	283	Death-associated protein kinase 3; death associate	4e-11
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	4e-11
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	4e-11
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	5e-11
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	6e-11
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	6e-11
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	6e-11
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	6e-11
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	6e-11
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	6e-11
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	7e-11
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	7e-11
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-10
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	1e-10
3fme_A	290	Dual specificity mitogen-activated protein kinase;	1e-10
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	1e-10
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	1e-10
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	1e-10
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	1e-10
3pls_A	298	Macrophage-stimulating protein receptor; protein k	1e-10
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	1e-10
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-10
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	1e-10
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	1e-10
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-10
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-10
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	2e-10
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	2e-10
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	2e-10
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	2e-10
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-10
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	2e-10
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	2e-10
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	3e-10
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	3e-10
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	3e-10
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	3e-10
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	3e-10
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	3e-10
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	4e-10
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	4e-10
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	5e-10
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	6e-10
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	6e-10
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	6e-10
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	7e-10
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	8e-10
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	8e-10
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	9e-10
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	9e-10
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	9e-10
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	1e-09
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	1e-09
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	1e-09
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	1e-09
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	1e-09
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	1e-09
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	1e-09
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	2e-09
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	2e-09
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	2e-09
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	2e-09
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	2e-09
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	3e-09
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	3e-09
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	3e-09
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	3e-09
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	4e-09
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	4e-09
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	4e-09
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	6e-09
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	7e-09
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	7e-09
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	8e-09
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	8e-09
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	8e-09
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	9e-09
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	9e-09
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	1e-08
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	1e-08
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	2e-08
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	2e-08
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	2e-08
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	2e-08
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	2e-08
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	2e-08
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	2e-08
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	3e-08
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	3e-08
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	3e-08
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	3e-08
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	4e-08
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	5e-08
4aoj_A	329	High affinity nerve growth factor receptor; transf	5e-08
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	5e-08
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	6e-08
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	7e-08
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	7e-08
3o0g_A	292	Cell division protein kinase 5; kinase activator c	7e-08
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	7e-08
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	9e-08
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	9e-08
3niz_A	311	Rhodanese family protein; structural genomics, str	9e-08
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	9e-08
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	1e-07
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	1e-07
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	1e-07
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	1e-07
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	1e-07
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	2e-07
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-07
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	2e-07
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	2e-07
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-07
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	2e-07
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	3e-07
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	3e-07
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	3e-07
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	3e-07
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	4e-07
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	4e-07
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	5e-07
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	7e-07
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	8e-07
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	8e-07
3rp9_A	458	Mitogen-activated protein kinase; structural genom	1e-06
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	2e-06
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	5e-06
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	6e-06
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	8e-05
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	2e-04
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	3e-04
3uqc_A	286	Probable conserved transmembrane protein; structur	4e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  133 bits (336), Expect = 4e-38
 Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 1/112 (0%)

Query: 81  REIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITS 140
           + I + +++G+AYLH+ C  KI+H D+K  ++LLDE F     DFGLAKL + + TH+ +
Sbjct: 134 QRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHV-T 192

Query: 141 TGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQE 192
           T  R T G  APE       ++K DVF +G++L E++  +R  +       +
Sbjct: 193 TAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDD 244

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  111 bits (281), Expect = 4e-30
 Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 5/119 (4%)

Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY-NREHTHITS 140
           EI +  ++G+ YLH      I+H D+K  ++LLDENF PK  DFG++K     + TH+ S
Sbjct: 143 EICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHL-S 198

Query: 141 TGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKWGR 199
           T  + T G   PE ++   +T+K DV+SFG++LFEV+  R  + + +        +W  
Sbjct: 199 TVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAV 257

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  106 bits (267), Expect = 4e-28
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 12/150 (8%)

Query: 60  FLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEE-------CRQKIVHYDIKPESV 112
           F   G      K N++ + +L  I  + ++G+AYLHE+        +  I H DIK ++V
Sbjct: 103 FHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNV 162

Query: 113 LLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE-----LWMPYSVTQKCDVF 167
           LL  N     ADFGLA  +    +   + G+  T    APE     +        + D++
Sbjct: 163 LLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMY 222

Query: 168 SFGMLLFEVVGRRRNLEKEISEGQEWFPKW 197
           + G++L+E+  R    +  + E    F + 
Sbjct: 223 AMGLVLWELASRCTAADGPVDEYMLPFEEE 252

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  101 bits (253), Expect = 4e-26
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 12/107 (11%)

Query: 83  IEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY-NREHTHITST 141
           I    + GI +LHE      +H DIK  ++LLDE F  K +DFGLA+       T + ++
Sbjct: 138 IAQGAANGINFLHENH---HIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVM-TS 193

Query: 142 GRRRTPGCEAPELWMPYS---VTQKCDVFSFGMLLFEVVGRRRNLEK 185
               T    APE         +T K D++SFG++L E++     +++
Sbjct: 194 RIVGTTAYMAPE----ALRGEITPKSDIYSFGVVLLEIITGLPAVDE 236

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 93.5 bits (233), Expect = 2e-23
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           +  L   +   +    +KG+ YLH      IVH ++K  ++L+D+ +  K  DFGL++L 
Sbjct: 131 REQLDERRRLSMAYDVAKGMNYLHN-RNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRL- 188

Query: 132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
            +  T ++S     TP   APE+       +K DV+SFG++L+E+   +
Sbjct: 189 -KASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQ 236

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 90.0 bits (224), Expect = 4e-22
 Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 10/116 (8%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L   +      +L +I   T++G+ YLH    + I+H D+K  ++ L E+   K  DFG
Sbjct: 109 HLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFG 165

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPEL-----WMPYSVTQKCDVFSFGMLLFEVV 177
           LA   +R            +    APE+       PY  + + DV++FG++L+E++
Sbjct: 166 LATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPY--SFQSDVYAFGIVLYELM 219

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 88.9 bits (221), Expect = 8e-22
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 12/129 (9%)

Query: 60  FLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF 119
           F   GP   +     +    L    V  ++G+ YLH+E    I+H D+K  ++L+ +   
Sbjct: 87  FARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVE 146

Query: 120 P--------KAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGM 171
                    K  DFGLA    RE    T           APE+      ++  DV+S+G+
Sbjct: 147 NGDLSNKILKITDFGLA----REWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGV 202

Query: 172 LLFEVVGRR 180
           LL+E++   
Sbjct: 203 LLWELLTGE 211

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 89.3 bits (222), Expect = 1e-21
 Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 6/95 (6%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFF-PKAADFGLAKLYNREHTHITSTGRRRT 146
           S+G+AYLH    + ++H D+KP ++LL       K  DFG A       T   + G   +
Sbjct: 112 SQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMT--NNKG---S 166

Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
               APE++   + ++KCDVFS+G++L+EV+ RR+
Sbjct: 167 AAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRK 201

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 88.6 bits (220), Expect = 2e-21
 Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 14/145 (9%)

Query: 60  FLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEE-----CRQKIVHYDIKPESVLL 114
           +  MG  Y   +   L       I +S + G+A+LH E      +  I H D+K +++L+
Sbjct: 87  YHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILV 146

Query: 115 DENFFPKAADFGLAKLYNREHTH--ITSTGRRRTPGCEAPELW------MPYSVTQKCDV 166
            +N     AD GLA ++++      + +  R  T    APE+         +   ++ D+
Sbjct: 147 KKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDI 206

Query: 167 FSFGMLLFEVVGRRRNLEKEISEGQ 191
           ++FG++L+EV  RR      + + +
Sbjct: 207 WAFGLVLWEVA-RRMVSNGIVEDYK 230

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 86.2 bits (214), Expect = 1e-20
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 19/133 (14%)

Query: 60  FLAMGPFY--LLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE- 116
           F+  G  Y  LL K + + +     + +  + GI Y+       IVH D++  ++ L   
Sbjct: 102 FVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQN-QNPPIVHRDLRSPNIFLQSL 160

Query: 117 ----NFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWM----PYSVTQKCDVFS 168
                   K ADFGL+    ++  H + +G        APE        Y  T+K D +S
Sbjct: 161 DENAPVCAKVADFGLS----QQSVH-SVSGLLGNFQWMAPETIGAEEESY--TEKADTYS 213

Query: 169 FGMLLFEVVGRRR 181
           F M+L+ ++    
Sbjct: 214 FAMILYTILTGEG 226

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 85.7 bits (213), Expect = 1e-20
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 12/118 (10%)

Query: 67  YLLCKKNI-LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
            L    N  +   Q  +  +  ++G+A+LH      I  + +   SV++DE+   + +  
Sbjct: 99  VLHEGTNFVVDQSQAVKFALDMARGMAFLHT-LEPLIPRHALNSRSVMIDEDMTARISMA 157

Query: 126 GLAKLYNREHTHITSTGRRRTPGCEAPELWM--PYSV-TQKCDVFSFGMLLFEVVGRR 180
            +   +        S GR   P   APE     P     +  D++SF +LL+E+V R 
Sbjct: 158 DVKFSF-------QSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTRE 208

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 85.9 bits (213), Expect = 2e-20
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 14/145 (9%)

Query: 60  FLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEE-----CRQKIVHYDIKPESVLL 114
           +   G  Y   K   L    + ++  S+  G+ +LH E      +  I H D+K +++L+
Sbjct: 116 YHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILV 175

Query: 115 DENFFPKAADFGLAKLY--NREHTHITSTGRRRTPGCEAPELWMPYS------VTQKCDV 166
            +N     AD GLA  +  +     I    R  T     PE+                D+
Sbjct: 176 KKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADM 235

Query: 167 FSFGMLLFEVVGRRRNLEKEISEGQ 191
           +SFG++L+EV  RR      + E Q
Sbjct: 236 YSFGLILWEVA-RRCVSGGIVEEYQ 259

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 85.2 bits (211), Expect = 5e-20
 Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 13/133 (9%)

Query: 60  FLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEE-----CRQKIVHYDIKPESVLL 114
           +   G  +    +  +    + ++ +ST+ G+A+LH E      +  I H D+K +++L+
Sbjct: 121 YHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILV 180

Query: 115 DENFFPKAADFGLAKLYNREHTH--ITSTGRRRTPGCEAPELWM------PYSVTQKCDV 166
            +N     AD GLA  ++       I    R  T    APE+         +   ++ D+
Sbjct: 181 KKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADI 240

Query: 167 FSFGMLLFEVVGR 179
           ++ G++ +E+  R
Sbjct: 241 YAMGLVFWEIARR 253

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 83.2 bits (206), Expect = 2e-19
 Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 21/130 (16%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
            +    +   + Q        + G+AYLH      I+H D+   + L+ EN     ADFG
Sbjct: 97  IIKSMDSQYPWSQRVSFAKDIASGMAYLHS---MNIIHRDLNSHNCLVRENKNVVVADFG 153

Query: 127 LAKLYNREHTHIT-------STGRRRTPGCEAPELWM--------PYSVTQKCDVFSFGM 171
           LA+L   E T             ++R      P  WM         Y   +K DVFSFG+
Sbjct: 154 LARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPY-WMAPEMINGRSY--DEKVDVFSFGI 210

Query: 172 LLFEVVGRRR 181
           +L E++GR  
Sbjct: 211 VLCEIIGRVN 220

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 81.0 bits (200), Expect = 1e-18
 Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 19/143 (13%)

Query: 60  FLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEE------CRQKIVHYDIKPESVL 113
           +   G        +   +     +  S ++G+AYLH E       +  I H D+   +VL
Sbjct: 93  YYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVL 152

Query: 114 LDENFFPKAADFGLAKLYNR------EHTHITSTGRRRTPGCEAPE-------LWMPYSV 160
           +  +     +DFGL+                 +     T    APE       L    S 
Sbjct: 153 VKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESA 212

Query: 161 TQKCDVFSFGMLLFEVVGRRRNL 183
            ++ D+++ G++ +E+  R  +L
Sbjct: 213 LKQVDMYALGLIYWEIFMRCTDL 235

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 78.6 bits (194), Expect = 9e-18
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 20/128 (15%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
            +   K +L   + R+I     KG+ YLH    + I+H D+K ++V  D        DFG
Sbjct: 119 VVRDAKIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYDNGKV-VITDFG 174

Query: 127 LAKLYNREHTHITS---TGRRRTPGCEAPELWM-----------PYSVTQKCDVFSFGML 172
           L  +               +       APE+             P+S  +  DVF+ G +
Sbjct: 175 LFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFS--KHSDVFALGTI 232

Query: 173 LFEVVGRR 180
            +E+  R 
Sbjct: 233 WYELHARE 240

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 76.2 bits (188), Expect = 6e-17
 Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 9/99 (9%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           Q+      T   +A+LH    Q +VH D+KP ++ L      K  DFGL           
Sbjct: 158 QVWGYLRDTLLALAHLHS---QGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGE 214

Query: 139 TSTGRRRTPGCEAPELWM-PYSVTQKCDVFSFGMLLFEV 176
              G    P   APEL    Y      DVFS G+ + EV
Sbjct: 215 VQEG---DPRYMAPELLQGSY--GTAADVFSLGLTILEV 248

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 10/89 (11%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           KG+ Y+H    +K+++ D+KP ++ L +    K  DFGL      +     S G   T  
Sbjct: 133 KGVDYIHS---KKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKG---TLR 186

Query: 149 CEAPELW--MPYSVTQKCDVFSFGMLLFE 175
             +PE      Y   ++ D+++ G++L E
Sbjct: 187 YMSPEQISSQDYG--KEVDLYALGLILAE 213

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 72.9 bits (179), Expect = 2e-15
 Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 42/176 (23%)

Query: 38  MIAADNFSNLV---GSEDTETYIKGFLAM-----GPFYLLCKKNILGFGQLREIEVSTSK 89
           +  +D+  N++    SE T+ ++  ++A+         L+  KN+       + E +   
Sbjct: 62  LTESDDHPNVIRYYCSETTDRFL--YIALELCNLNLQDLVESKNVSDENLKLQKEYNPIS 119

Query: 90  -------GIAYLHEECRQKIVHYDIKPESVLLD-------------ENFFPKAADFGLAK 129
                  G+A+LH     KI+H D+KP+++L+              EN     +DFGL K
Sbjct: 120 LLRQIASGVAHLHS---LKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCK 176

Query: 130 LYNREHTHITSTGRRR--TPGCEAPEL-------WMPYSVTQKCDVFSFGMLLFEV 176
             +   +   +       T G  APEL            +T+  D+FS G + + +
Sbjct: 177 KLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYI 232

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 71.6 bits (175), Expect = 5e-15
 Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 21/103 (20%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           + +A LH      +VH  ++P  ++LD+        F              S+    + G
Sbjct: 217 RLLASLH---HYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGARV---VSSV---SRG 267

Query: 149 CEAPELWMPYS-----------VTQKCDVFSFGMLLFE-VVGR 179
            E PEL    +           +T   D ++ G++++      
Sbjct: 268 FEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCAD 310

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 70.4 bits (173), Expect = 6e-15
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 18/115 (15%)

Query: 90  GIAYLHE--ECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-TSTGRRRT 146
            +   H   +    ++H D+KP +V LD     K  DFGLA++ N + +   T  G   T
Sbjct: 123 ALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVG---T 179

Query: 147 PGCEAPELW--MPYSVTQKCDVFSFGMLLFEVVGRRR--------NLEKEISEGQ 191
           P   +PE    M Y+  +K D++S G LL+E+              L  +I EG+
Sbjct: 180 PYYMSPEQMNRMSYN--EKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGK 232

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 70.0 bits (172), Expect = 9e-15
 Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-TSTGRRRTPG 148
           GI YLH    QKI+H DIKP ++L+ E+   K ADFG++  +      +  + G   TP 
Sbjct: 149 GIEYLH---YQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVG---TPA 202

Query: 149 CEAPEL----WMPYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPK 196
             APE        +S  +  DV++ G+ L+  V G+          L  +I      FP 
Sbjct: 203 FMAPESLSETRKIFS-GKALDVWAMGVTLYCFVFGQCPFMDERIMCLHSKIKSQALEFPD 261

Query: 197 W 197
            
Sbjct: 262 Q 262

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 17/118 (14%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + Y H   +++IVH D+K E++LLD +   K ADFG +  +          G    P  
Sbjct: 126 AVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCG---APPY 179

Query: 150 EAPELWM--PYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKW 197
            APEL+    Y    + DV+S G++L+  V G         + L + +  G+   P +
Sbjct: 180 AAPELFQGKKYD-GPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFY 236

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 26/130 (20%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR--- 145
           + ++Y+H    Q I+H D+KP ++ +DE+   K  DFGLAK  +R    +    +     
Sbjct: 127 EALSYIHS---QGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGS 183

Query: 146 ---------TPGCEAPELWM---PYSVTQKCDVFSFGMLLFEVV------GRRRNLEKEI 187
                    T    A E+      Y   +K D++S G++ FE++        R N+ K++
Sbjct: 184 SDNLTSAIGTAMYVATEVLDGTGHY--NEKIDMYSLGIIFFEMIYPFSTGMERVNILKKL 241

Query: 188 SEGQEWFPKW 197
                 FP  
Sbjct: 242 RSVSIEFPPD 251

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITS-TGRRRTPG 148
            + ++H+   +KI+H DIK +++ L ++   +  DFG+A++ N       +  G   TP 
Sbjct: 137 ALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIG---TPY 190

Query: 149 CEAPELW--MPYSVTQKCDVFSFGMLLFE 175
             +PE+    PY+   K D+++ G +L+E
Sbjct: 191 YLSPEICENKPYN--NKSDIWALGCVLYE 217

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 69.4 bits (170), Expect = 3e-14
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 12/97 (12%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKA--ADFGLAK-LYNREHTHITSTG 142
            G+A+LH      IVH D+KP ++L+   + +   KA  +DFGL K L    H+    +G
Sbjct: 129 SGLAHLHS---LNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSG 185

Query: 143 RRRTPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEV 176
              T G  APE+       + T   D+FS G + + V
Sbjct: 186 VPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYV 222

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 68.6 bits (168), Expect = 3e-14
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 14/112 (12%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
            + +I   T + + ++H   +  I+H D+K E++LL      K  DFG A   +    + 
Sbjct: 137 TVLKIFYQTCRAVQHMHR-QKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYS 195

Query: 139 TSTGRRR----------TPGCEAPELWMPYS---VTQKCDVFSFGMLLFEVV 177
            S  RR           TP    PE+   YS   + +K D+++ G +L+ + 
Sbjct: 196 WSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLC 247

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 68.9 bits (168), Expect = 5e-14
 Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 14/108 (12%)

Query: 78  GQLREIEVST-----SKGIAYLHEECRQKIVHYDIKPESVLLD---ENFFPKAADFGLAK 129
             L+E  + T     S  + YLHE    +I+H D+KPE+++L    +    K  D G AK
Sbjct: 116 CGLKEGPIRTLLSDISSALRYLHE---NRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAK 172

Query: 130 LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             ++        G   T    APEL      T   D +SFG L FE +
Sbjct: 173 ELDQGELCTEFVG---TLQYLAPELLEQKKYTVTVDYWSFGTLAFECI 217

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 68.5 bits (167), Expect = 5e-14
 Identities = 11/91 (12%), Positives = 26/91 (28%), Gaps = 10/91 (10%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           +  A L     + +VH    P+++ +  +      D              +S        
Sbjct: 205 RLAANLQ---SKGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVG-TRGPASSV----PVT 256

Query: 149 CEAPELWMP--YSVTQKCDVFSFGMLLFEVV 177
               E       + T   + +  G+ ++ V 
Sbjct: 257 YAPREFLNASTATFTHALNAWQLGLSIYRVW 287

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 68.5 bits (167), Expect = 6e-14
 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 12/98 (12%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR-TP 147
           + +A LH      +VH  ++P  ++LD+        F          + ++  GR    P
Sbjct: 222 RLLASLH---HYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDG--ASAVSPIGRGFAPP 276

Query: 148 GCEAPELW-----MPYSVTQKCDVFSFGMLLFE-VVGR 179
              A  +       P  +T   D ++ G+ ++      
Sbjct: 277 ETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCAD 314

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 68.0 bits (166), Expect = 6e-14
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 17/99 (17%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE-----HTHITSTGR 143
           + + +LH    + ++H D+KP ++    +   K  DFGL    +++              
Sbjct: 175 EAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYA 231

Query: 144 RRTPGC-----EAPELW--MPYSVTQKCDVFSFGMLLFE 175
             T         +PE      YS   K D+FS G++LFE
Sbjct: 232 THTGQVGTKLYMSPEQIHGNNYS--HKVDIFSLGLILFE 268

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 67.7 bits (166), Expect = 7e-14
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-TSTGRRRTPG 148
            + ++H    ++++H DIKP +V +      K  D GL + ++ + T   +  G   TP 
Sbjct: 148 ALEHMHS---RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVG---TPY 201

Query: 149 CEAPELWM--PYSVTQKCDVFSFGMLLFE 175
             +PE      Y+   K D++S G LL+E
Sbjct: 202 YMSPERIHENGYN--FKSDIWSLGCLLYE 228

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 67.8 bits (166), Expect = 7e-14
 Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 28/143 (19%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT-- 136
           Q+  + +   +G+  +H    +   H D+KP ++LL +   P   D G            
Sbjct: 135 QILWLLLGICRGLEAIHA---KGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGS 191

Query: 137 --------HITSTGRRRTPGCEAPELWMPYS---VTQKCDVFSFGMLL---------FEV 176
                            T    APEL+   S   + ++ DV+S G +L         +++
Sbjct: 192 RQALTLQDWAAQRC---TISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDM 248

Query: 177 VGRRRNLEKEISEGQEWFPKWGR 199
           V ++ +      + Q   P+  R
Sbjct: 249 VFQKGDSVALAVQNQLSIPQSPR 271

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 67.3 bits (165), Expect = 8e-14
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 16/94 (17%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           + I  LH+     IVH D+KPE++LLD++   K  DFG +   +         G   TP 
Sbjct: 135 EVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCG---TPS 188

Query: 149 CEAPE--------LWMPYSVTQKCDVFSFGMLLF 174
             APE            Y   ++ D++S G++++
Sbjct: 189 YLAPEIIECSMNDNHPGYG--KEVDMWSTGVIMY 220

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 67.5 bits (165), Expect = 8e-14
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLL--DENFFPKAADFGLAKLYNREHTHITSTGRRR-- 145
            + YLH    Q I H DIKPE+ L   +++F  K  DFGL+K + + +         +  
Sbjct: 180 ALHYLHN---QGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAG 236

Query: 146 TPGCEAPELW--MPYSVTQKCDVFSFGMLLF 174
           TP   APE+      S   KCD +S G+LL 
Sbjct: 237 TPYFVAPEVLNTTNESYGPKCDAWSAGVLLH 267

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 68.2 bits (167), Expect = 8e-14
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 12/90 (13%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRR 145
            GI Y+H+    KIVH D+KPE++LL    ++   +  DFGL+  +          G   
Sbjct: 137 SGITYMHK---NKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIG--- 190

Query: 146 TPGCEAPE-LWMPYSVTQKCDVFSFGMLLF 174
           T    APE L   Y   +KCDV+S G++L+
Sbjct: 191 TAYYIAPEVLHGTYD--EKCDVWSTGVILY 218

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 66.8 bits (164), Expect = 1e-13
 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 17/118 (14%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + Y H   R  +VH D+KPE+VLLD +   K ADFGL+ + +      TS G   +P  
Sbjct: 123 AVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCG---SPNY 176

Query: 150 EAPELWM--PYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKW 197
            APE+     Y+   + D++S G++L+  + G           L K+I  G  + P++
Sbjct: 177 AAPEVISGRLYA-GPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEY 233

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 16/94 (17%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRR 145
             + YLHE     I+H D+KPE+VLL   +E+   K  DFG +K+        T  G   
Sbjct: 250 LAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCG--- 303

Query: 146 TPGCEAPE-----LWMPYSVTQKCDVFSFGMLLF 174
           TP   APE         Y   +  D +S G++LF
Sbjct: 304 TPTYLAPEVLVSVGTAGY--NRAVDCWSLGVILF 335

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 66.5 bits (163), Expect = 2e-13
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 12/90 (13%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRR 145
             +AY H+     + H D+KPE+ L      +   K  DFGLA  +       T  G   
Sbjct: 117 SAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVG--- 170

Query: 146 TPGCEAPE-LWMPYSVTQKCDVFSFGMLLF 174
           TP   +P+ L   Y    +CD +S G++++
Sbjct: 171 TPYYVSPQVLEGLYG--PECDEWSAGVMMY 198

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 12/90 (13%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRR 145
            G+ YLH+     IVH D+KPE++LL   +++   K  DFGL+ ++  +       G   
Sbjct: 147 SGVTYLHK---HNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLG--- 200

Query: 146 TPGCEAPE-LWMPYSVTQKCDVFSFGMLLF 174
           T    APE L   Y   +KCDV+S G++LF
Sbjct: 201 TAYYIAPEVLRKKYD--EKCDVWSIGVILF 228

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 12/89 (13%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
           GI Y+H+     IVH D+KPE++LL   +++   K  DFGL+  + +        G   T
Sbjct: 133 GITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIG---T 186

Query: 147 PGCEAPE-LWMPYSVTQKCDVFSFGMLLF 174
               APE L   Y   +KCDV+S G++L+
Sbjct: 187 AYYIAPEVLRGTYD--EKCDVWSAGVILY 213

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 66.1 bits (162), Expect = 2e-13
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            +AY H    Q +VH D+KPE++L      +   K  DFGLA+L+  +     + G   T
Sbjct: 136 ALAYFHS---QHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAG---T 189

Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLF 174
               APE+     VT KCD++S G++++
Sbjct: 190 ALYMAPEV-FKRDVTFKCDIWSAGVVMY 216

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 66.1 bits (162), Expect = 2e-13
 Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 17/118 (14%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            I Y H   R KIVH D+KPE++LLD+N   K ADFGL+ +    +   TS G   +P  
Sbjct: 120 AIEYCH---RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCG---SPNY 173

Query: 150 EAPELWM--PYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKW 197
            APE+     Y+   + DV+S G++L+  +VGR         NL K+++      P +
Sbjct: 174 AAPEVINGKLYA-GPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPDF 230

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 17/115 (14%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YL     + I+H DIK E++++ E+F  K  DFG A    R     T  G   T   
Sbjct: 142 AVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCG---TIEY 195

Query: 150 EAPELWM--PYSVTQKCDVFSFGMLLFE-VVGRRRNL----EKEISEGQEWFPKW 197
            APE+ M  PY    + +++S G+ L+  V            +E  E     P  
Sbjct: 196 CAPEVLMGNPYR-GPELEMWSLGVTLYTLVFEE---NPFCELEETVEAAIHPPYL 246

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 66.3 bits (162), Expect = 4e-13
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 12/89 (13%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
           GI YLH+     IVH DIKPE++LL   +     K  DFGL+  +++++      G   T
Sbjct: 158 GICYLHK---HNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLG---T 211

Query: 147 PGCEAPE-LWMPYSVTQKCDVFSFGMLLF 174
               APE L   Y   +KCDV+S G++++
Sbjct: 212 AYYIAPEVLKKKY--NEKCDVWSCGVIMY 238

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 16/93 (17%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
            + YLHE     I+H D+KPE+VLL   +E+   K  DFG +K+        T  G   T
Sbjct: 126 AVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCG---T 179

Query: 147 PGCEAPE-----LWMPYSVTQKCDVFSFGMLLF 174
           P   APE         Y   +  D +S G++LF
Sbjct: 180 PTYLAPEVLVSVGTAGY--NRAVDCWSLGVILF 210

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 65.3 bits (160), Expect = 4e-13
 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 15/116 (12%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + Y H    +K++H DIKPE++L+      K ADFG +          T  G   T   
Sbjct: 126 ALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRR-TMCG---TLDY 178

Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKW 197
             PE+    +  +K D++  G+L +E +VG             + I      FP +
Sbjct: 179 LPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKFPPF 234

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 65.3 bits (160), Expect = 4e-13
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 12/90 (13%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRR 145
            GI Y+H+     IVH D+KPE++LL   +++   K  DFGL+  + +        G   
Sbjct: 132 SGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIG--- 185

Query: 146 TPGCEAPE-LWMPYSVTQKCDVFSFGMLLF 174
           T    APE L   Y   +KCDV+S G++L+
Sbjct: 186 TAYYIAPEVLRGTYD--EKCDVWSAGVILY 213

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 65.5 bits (160), Expect = 5e-13
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 16/94 (17%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           + +++LH      IVH D+KPE++LLD+N   + +DFG +             G   TPG
Sbjct: 211 EAVSFLHA---NNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRELCG---TPG 264

Query: 149 CEAPE--------LWMPYSVTQKCDVFSFGMLLF 174
             APE            Y   ++ D+++ G++LF
Sbjct: 265 YLAPEILKCSMDETHPGYG--KEVDLWACGVILF 296

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 65.1 bits (159), Expect = 5e-13
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 17/99 (17%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           + + +LH    + ++H D+KP ++    +   K  DFGL    +++    T         
Sbjct: 129 EAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYA 185

Query: 149 CE----------APELW--MPYSVTQKCDVFSFGMLLFE 175
                       +PE      YS   K D+FS G++LFE
Sbjct: 186 RHTGQVGTKLYMSPEQIHGNSYS--HKVDIFSLGLILFE 222

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 65.6 bits (160), Expect = 6e-13
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 17/118 (14%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           G+ Y H   R  +VH D+KPE+VLLD +   K ADFGL+ + +      TS G   +P  
Sbjct: 128 GVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCG---SPNY 181

Query: 150 EAPELWM--PYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKW 197
            APE+     Y+   + D++S G++L+  + G           L K+I +G  + P++
Sbjct: 182 AAPEVISGRLYA-GPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQY 238

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 65.0 bits (159), Expect = 6e-13
 Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 37/157 (23%)

Query: 47  LVGSEDTETYIKGFLAM----GPFYLLCKKNILGFGQLREIEVST-----SKGIAYLHEE 97
           L   E T+ YI  ++ M           KK       +   E  +      + +  +H+ 
Sbjct: 93  LYDYEITDQYI--YMVMECGNIDLNSWLKK----KKSIDPWERKSYWKNMLEAVHTIHQ- 145

Query: 98  CRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI---TSTGRRRTPGCEAPEL 154
               IVH D+KP + L+ +    K  DFG+A     + T +   +  G   T     PE 
Sbjct: 146 --HGIVHSDLKPANFLIVDGML-KLIDFGIANQMQPDTTSVVKDSQVG---TVNYMPPEA 199

Query: 155 WM-----------PYSVTQKCDVFSFGMLLFE-VVGR 179
                           ++ K DV+S G +L+    G+
Sbjct: 200 IKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGK 236

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 64.8 bits (158), Expect = 8e-13
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 18/100 (18%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLL----DENFFPKAADFGLAKLYNREHTHITSTGRRR 145
           G+ +L E     IVH +IKP +++     D     K  DFG A+    +   ++  G   
Sbjct: 124 GMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYG--- 177

Query: 146 TPGCEAPELWMPYSV--------TQKCDVFSFGMLLFEVV 177
           T     P+++    +            D++S G+  +   
Sbjct: 178 TEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAA 217

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 64.9 bits (158), Expect = 8e-13
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 18/100 (18%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLL----DENFFPKAADFGLAKLYNREHTHITSTGRRR 145
           G+ +L E     IVH +IKP +++     D     K  DFG A+    +   ++  G   
Sbjct: 124 GMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYG--- 177

Query: 146 TPGCEAPELWMPYSV--------TQKCDVFSFGMLLFEVV 177
           T     P+++    +            D++S G+  +   
Sbjct: 178 TEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAA 217

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 64.5 bits (158), Expect = 8e-13
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 32/140 (22%)

Query: 78  GQLREIEVST-----SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN 132
               E E          G+ YLH      I+H D+   ++LL  N   K ADFGLA    
Sbjct: 107 KPFSENEARHFMHQIITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLA---- 159

Query: 133 REHTHITSTGRRR-----TPGCEAPELWM--PYSVTQKCDVFSFGMLLFE-VVGR----- 179
              T +     +      TP   +PE+     +    + DV+S G + +  ++GR     
Sbjct: 160 ---TQLKMPHEKHYTLCGTPNYISPEIATRSAHG--LESDVWSLGCMFYTLLIGRPPFDT 214

Query: 180 --RRNLEKEISEGQEWFPKW 197
              +N   ++       P +
Sbjct: 215 DTVKNTLNKVVLADYEMPSF 234

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 65.2 bits (159), Expect = 8e-13
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 14/132 (10%)

Query: 71  KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL 130
            +  +    L  +    S  + YL +   +  +H ++   + L+ EN   K ADFGL++L
Sbjct: 311 NRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRNLAARNCLVGENHLVKVADFGLSRL 367

Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG 190
                T+    G +      APE       + K DV++FG+LL+E+           + G
Sbjct: 368 MT-GDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA----------TYG 416

Query: 191 QEWFPKWGREEV 202
              +P     +V
Sbjct: 417 MSPYPGIDLSQV 428

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 64.7 bits (158), Expect = 9e-13
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 19/116 (16%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFP-KAADFGLAKLYNREHTHITSTGRRRTPG 148
            + + H      ++H DIK E++L+D N    K  DFG   L           G   T  
Sbjct: 161 AVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYT-DFDG---TRV 213

Query: 149 CEAPELWM--PYSVTQKCDVFSFGMLLFE-VVGRRRNL----EKEISEGQEWFPKW 197
              PE      Y   +   V+S G+LL++ V G    +    ++EI  GQ +F + 
Sbjct: 214 YSPPEWIRYHRYH-GRSAAVWSLGILLYDMVCGD---IPFEHDEEIIRGQVFFRQR 265

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 64.7 bits (158), Expect = 9e-13
 Identities = 33/154 (21%), Positives = 56/154 (36%), Gaps = 31/154 (20%)

Query: 47  LVGSEDTETYIKGFLAM----GPFYLLCKKNILGFGQLREIEVST-----SKGIAYLHEE 97
           L   E T+ YI  ++ M           KK       +   E  +      + +  +H+ 
Sbjct: 74  LYDYEITDQYI--YMVMECGNIDLNSWLKK----KKSIDPWERKSYWKNMLEAVHTIHQ- 126

Query: 98  CRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL--- 154
               IVH D+KP + L+ +    K  DFG+A     + T +    +  T     PE    
Sbjct: 127 --HGIVHSDLKPANFLIVDGML-KLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKD 183

Query: 155 --------WMPYSVTQKCDVFSFGMLLFE-VVGR 179
                        ++ K DV+S G +L+    G+
Sbjct: 184 MSSSRENGKSKSKISPKSDVWSLGCILYYMTYGK 217

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 21/140 (15%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L  +   L    L ++    + G+ YL     +  +H D+   + L+ E    K +DFG
Sbjct: 202 FLRTEGARLRVKTLLQMVGDAAAGMEYLES---KCCIHRDLAARNCLVTEKNVLKISDFG 258

Query: 127 LAKLYNREHTHITSTGRRRTP----GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRN 182
           +++    +  +  S G R+ P       APE       + + DV+SFG+LL+E       
Sbjct: 259 MSR-EEADGVYAASGGLRQVPVKWT---APEALNYGRYSSESDVWSFGILLWETF----- 309

Query: 183 LEKEISEGQEWFPKWGREEV 202
                S G   +P    ++ 
Sbjct: 310 -----SLGASPYPNLSNQQT 324

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 19/116 (16%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLD-ENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
            I + H    + +VH DIK E++L+D      K  DFG   L + E       G   T  
Sbjct: 151 AIQHCH---SRGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYT-DFDG---TRV 203

Query: 149 CEAPELWM--PYSVTQKCDVFSFGMLLFE-VVGRRRNL----EKEISEGQEWFPKW 197
              PE      Y       V+S G+LL++ V G    +    ++EI E +  FP  
Sbjct: 204 YSPPEWISRHQYH-ALPATVWSLGILLYDMVCGD---IPFERDQEILEAELHFPAH 255

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 27/156 (17%), Positives = 46/156 (29%), Gaps = 35/156 (22%)

Query: 51  EDTETYIK-GFLAMGPFYLLCKKNILGFGQLREIEVST-----SKGIAYLHEECRQKIVH 104
           ED    I+  +   G       +N       +E E+        +G+ Y+H      +VH
Sbjct: 82  EDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHS---MSLVH 138

Query: 105 YDIKPESVLLDEN-------------------FFPKAADFGLAKLYNREHTHITSTGRRR 145
            DIKP ++ +                         K  D G     +         G   
Sbjct: 139 MDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQVE---EG--- 192

Query: 146 TPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRR 180
                A E+    Y+   K D+F+  + +    G  
Sbjct: 193 DSRFLANEVLQENYTHLPKADIFALALTVVCAAGAE 228

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 64.4 bits (157), Expect = 1e-12
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 19/118 (16%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
             +Y+H    + I H D+KP ++L+D+N   K +DFG ++    +     S G   T   
Sbjct: 163 SFSYIHN--EKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIK-GSRG---TYEF 216

Query: 150 EAPELWM---PYSVTQKCDVFSFGMLLFE-VVGR--------RRNLEKEISEGQEWFP 195
             PE +     Y+   K D++S G+ L+                 L   I      +P
Sbjct: 217 MPPEFFSNESSYN-GAKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRTKNIEYP 273

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 15/116 (12%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            ++Y H    ++++H DIKPE++LL      K ADFG +  +          G   T   
Sbjct: 121 ALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV-HAPSSRRTDLCG---TLDY 173

Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKW 197
             PE+       +K D++S G+L +E +VG+        +   K IS  +  FP +
Sbjct: 174 LPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF 229

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 64.5 bits (157), Expect = 1e-12
 Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 31/154 (20%)

Query: 47  LVGSEDTETYIKGFLAM----GPFYLLCKKNILGFGQLREIEVST-----SKGIAYLHEE 97
           L   E T+ YI  ++ M           KK       +   E  +      + +  +H+ 
Sbjct: 121 LYDYEITDQYI--YMVMECGNIDLNSWLKK----KKSIDPWERKSYWKNMLEAVHTIHQ- 173

Query: 98  CRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL--- 154
               IVH D+KP + L+ +    K  DFG+A     + T +    +        PE    
Sbjct: 174 --HGIVHSDLKPANFLIVDGML-KLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKD 230

Query: 155 --------WMPYSVTQKCDVFSFGMLLFE-VVGR 179
                        ++ K DV+S G +L+    G+
Sbjct: 231 MSSSRENGKSKSKISPKSDVWSLGCILYYMTYGK 264

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 24/136 (17%)

Query: 78  GQLREIEVST-----SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLY 131
             L E E          G  YLH   R +++H D+K  ++ L+E+   K  DFGLA K+ 
Sbjct: 110 KALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVE 166

Query: 132 NREHTHITSTGRRRTPGCEAPELWM--PYSVTQKCDVFSFGMLLFE-VVGR-------RR 181
                     G   TP   APE+     +S   + DV+S G +++  +VG+        +
Sbjct: 167 YDGERKKVLCG---TPNYIAPEVLSKKGHS--FEVDVWSIGCIMYTLLVGKPPFETSCLK 221

Query: 182 NLEKEISEGQEWFPKW 197
                I + +   PK 
Sbjct: 222 ETYLRIKKNEYSIPKH 237

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 16/140 (11%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL   KN +   Q  +  V   KG+ YL     ++ VH D+   +VL++     K  DFG
Sbjct: 115 YLPKNKNKINLKQQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLVESEHQVKIGDFG 171

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV--G 178
           L K    +  + T    R +P       W        S      DV+SFG+ L E++   
Sbjct: 172 LTKAIETDKEYYTVKDDRDSPVF-----WYAPECLMQSKFYIASDVWSFGVTLHELLTYC 226

Query: 179 RRRNLEKEISEGQEWFPKWG 198
              +    +           
Sbjct: 227 DSDSSPMALFLKMIGPTHGQ 246

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 18/120 (15%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           G+  LH    ++IV+ D+KPE++LLD++   + +D GLA       T     G   T G 
Sbjct: 298 GLEDLHR---ERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVG---TVGY 351

Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFE-VVGR-----------RRNLEKEISEGQEWFPKW 197
            APE+      T   D ++ G LL+E + G+           R  +E+ + E  E + + 
Sbjct: 352 MAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEEYSER 411

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 21/122 (17%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTP 147
           G+ +LH+   + I++ D+KPE+VLLD++   + +D GLA    +     T    G   TP
Sbjct: 301 GLEHLHQ---RNIIYRDLKPENVLLDDDGNVRISDLGLAVE-LKAGQTKTKGYAG---TP 353

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFE-VVGR-----------RRNLEKEISEGQEWFP 195
           G  APEL +        D F+ G+ L+E +  R            + L++ + E    +P
Sbjct: 354 GFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYP 413

Query: 196 KW 197
             
Sbjct: 414 DK 415

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 21/108 (19%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL-AKLYNREHTH 137
            L +I ++T K + +L E    KI+H DIKP ++LLD +   K  DFG+  +L       
Sbjct: 126 ILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKLCDFGISGQL------- 176

Query: 138 ITSTGRRRTPGCE---APE------LWMPYSVTQKCDVFSFGMLLFEV 176
           + S  + R  GC    APE          Y V  + DV+S G+ L+E+
Sbjct: 177 VDSIAKTRDAGCRPYMAPERIDPSASRQGYDV--RSDVWSLGITLYEL 222

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 63.8 bits (155), Expect = 2e-12
 Identities = 19/126 (15%), Positives = 37/126 (29%), Gaps = 19/126 (15%)

Query: 66  FYLLCKKNILGFGQLREIEVST-----SKGIAYLHEECRQKIVHYDIKPESVLLDENFFP 120
              +          + +  V +        I  +H+    +I+H DIKP++ +L   F  
Sbjct: 155 LNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHD---CEIIHGDIKPDNFILGNGFLE 211

Query: 121 -----------KAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSF 169
                         D G +            T +  T G +  E+        + D F  
Sbjct: 212 QDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGV 271

Query: 170 GMLLFE 175
              ++ 
Sbjct: 272 AATVYC 277

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 24/136 (17%)

Query: 78  GQLREIEVST-----SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN 132
             L E E          G  YLH   R +++H D+K  ++ L+E+   K  DFGLA    
Sbjct: 136 KALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVE 192

Query: 133 RE-HTHITSTGRRRTPGCEAPELWM--PYSVTQKCDVFSFGMLLFE-VVGR-------RR 181
            +        G   TP   APE+     +S   + DV+S G +++  +VG+        +
Sbjct: 193 YDGERKKVLCG---TPNYIAPEVLSKKGHS--FEVDVWSIGCIMYTLLVGKPPFETSCLK 247

Query: 182 NLEKEISEGQEWFPKW 197
                I + +   PK 
Sbjct: 248 ETYLRIKKNEYSIPKH 263

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 62.6 bits (153), Expect = 3e-12
 Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 21/122 (17%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 117 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCG---T 170

Query: 147 PGCEAPELWM--PYSVTQKCDVFSFGMLL---------FEVVGRRRNLEKEISEGQEWFP 195
               APEL     +   +  DV+S G++L         ++          +  E + +  
Sbjct: 171 LPYVAPELLKRREFH-AEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLN 229

Query: 196 KW 197
            W
Sbjct: 230 PW 231

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 9/89 (10%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRR 145
           + +AYLHE     IVH D+KPE++L      +   K ADFGL+K+   +    T  G   
Sbjct: 159 EAVAYLHE---NGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCG--- 212

Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           TPG  APE+    +   + D++S G++ +
Sbjct: 213 TPGYCAPEILRGCAYGPEVDMWSVGIITY 241

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 62.3 bits (152), Expect = 5e-12
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 21/122 (17%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR---EHTHITSTGRRRT 146
           G+ YLH    Q IVH DIKP ++LL      K +  G+A+  +    + T  TS G   +
Sbjct: 121 GLEYLH---SQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQG---S 174

Query: 147 PGCEAPELWM---PYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFP 195
           P  + PE+      +S   K D++S G+ L+    G           L + I +G    P
Sbjct: 175 PAFQPPEIANGLDTFS-GFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYAIP 233

Query: 196 KW 197
             
Sbjct: 234 GD 235

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 61.8 bits (151), Expect = 7e-12
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 13/91 (14%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRR 145
           + IAY H      IVH ++KPE++LL    +    K ADFGLA   N         G   
Sbjct: 116 ESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAG--- 169

Query: 146 TPGCEAPE--LWMPYSVTQKCDVFSFGMLLF 174
           TPG  +PE     PYS  +  D+++ G++L+
Sbjct: 170 TPGYLSPEVLKKDPYS--KPVDIWACGVILY 198

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 62.0 bits (151), Expect = 7e-12
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 18/107 (16%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL-AKLYNREHTH 137
            L ++ V+  K + YL E+    ++H D+KP ++LLDE    K  DFG+  +L +     
Sbjct: 125 ILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGQIKLCDFGISGRLVD----- 177

Query: 138 ITSTGRRRTPGCE---APELWMPYSVTQ-----KCDVFSFGMLLFEV 176
                + R+ GC    APE   P   T+     + DV+S G+ L E+
Sbjct: 178 --DKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVEL 222

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 62.6 bits (152), Expect = 7e-12
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 23/122 (18%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
           G+ ++H    + +V+ D+KP ++LLDE+   + +D GLA  ++++  H  S G   T G 
Sbjct: 304 GLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPH-ASVG---THGY 356

Query: 150 EAPELWM---PYSVTQKCDVFSFGMLLFE-VVGR----------RRNLEKEISEGQEWFP 195
            APE+      Y      D FS G +LF+ + G           +  +++         P
Sbjct: 357 MAPEVLQKGVAY--DSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELP 414

Query: 196 KW 197
             
Sbjct: 415 DS 416

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 61.8 bits (151), Expect = 8e-12
 Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 14/91 (15%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRR 145
             + YLHE     IVH D+KPE++L    +EN      DFGL+K+        T+ G   
Sbjct: 117 SAVKYLHE---NGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMS-TACG--- 169

Query: 146 TPGCEAPE--LWMPYSVTQKCDVFSFGMLLF 174
           TPG  APE     PYS  +  D +S G++ +
Sbjct: 170 TPGYVAPEVLAQKPYS--KAVDCWSIGVITY 198

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 61.9 bits (151), Expect = 8e-12
 Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 21/122 (17%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITSTGRRRT 146
           G+ YLH      I H DIKPE++LLDE    K +DFGLA ++   NRE       G   T
Sbjct: 117 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCG---T 170

Query: 147 PGCEAPELWM--PYSVTQKCDVFSFGMLL---------FEVVGRRRNLEKEISEGQEWFP 195
               APEL     +   +  DV+S G++L         ++          +  E + +  
Sbjct: 171 LPYVAPELLKRREFH-AEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLN 229

Query: 196 KW 197
            W
Sbjct: 230 PW 231

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 62.0 bits (151), Expect = 9e-12
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 10/89 (11%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRR 145
             I +LH      I H D+KPE++L    +++   K  DFG AK   +     T      
Sbjct: 139 TAIQFLHS---HNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQ-TPCY--- 191

Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           TP   APE+  P    + CD++S G++++
Sbjct: 192 TPYYVAPEVLGPEKYDKSCDMWSLGVIMY 220

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 12/95 (12%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFP--KAADFGLAKLYNREHTHITSTGRRRTP 147
           G++Y H     +I H D+K E+ LLD +  P  K  DFG +K         ++ G   TP
Sbjct: 128 GVSYCH---SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVG---TP 181

Query: 148 GCEAPELWM--PYSVTQKCDVFSFGMLLFE-VVGR 179
              APE+ +   Y   +  DV+S G+ L+  +VG 
Sbjct: 182 AYIAPEVLLRQEYD-GKIADVWSCGVTLYVMLVGA 215

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 15/143 (10%)

Query: 48  VGSEDTETYIKGFLAMGPFY--------LLCKKNILGFGQLREIEVSTSKGIAYLHEECR 99
            G  +T      ++ M   Y        ++  +  +   +  E+     + + + H   +
Sbjct: 80  TGEAETPAGPLPYIVME--YVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSH---Q 134

Query: 100 QKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR-TPGCEAPELWMPY 158
             I+H D+KP ++++      K  DFG+A+        +T T     T    +PE     
Sbjct: 135 NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGD 194

Query: 159 SVTQKCDVFSFGMLLFE-VVGRR 180
           SV  + DV+S G +L+E + G  
Sbjct: 195 SVDARSDVYSLGCVLYEVLTGEP 217

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 20/120 (16%)

Query: 67  YLLCKKNI---LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFP--- 120
             L KK     +    +++I      G+ Y+H  C   I+H DIKPE+VL++    P   
Sbjct: 117 LALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCG--IIHTDIKPENVLMEIVDSPENL 174

Query: 121 ---KAADFGLAKLYNREHTHITSTGRRRTPGCEAPE--LWMPYSVTQKCDVFSFGMLLFE 175
              K AD G A  Y+  +T+   T   R     +PE  L  P+      D++S   L+FE
Sbjct: 175 IQIKIADLGNACWYDEHYTNSIQTREYR-----SPEVLLGAPWG--CGADIWSTACLIFE 227

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR-TPG 148
            +   H        H D+KPE++L+  + F    DFG+A         +T  G    T  
Sbjct: 146 ALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASA--TTDEKLTQLGNTVGTLY 200

Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFEVV-GRR 180
             APE +     T + D+++   +L+E + G  
Sbjct: 201 YMAPERFSESHATYRADIYALTCVLYECLTGSP 233

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRR 145
           + I YLH      I H D+KPE++L      N   K  DFG AK     ++  T      
Sbjct: 172 EAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCY--- 225

Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           TP   APE+  P    + CD++S G++++
Sbjct: 226 TPYYVAPEVLGPEKYDKSCDMWSLGVIMY 254

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 14/97 (14%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
            + YL     Q+I+H D+KP+++LLDE+      DF +A +  RE    T  G   T   
Sbjct: 127 ALDYLQN---QRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTMAG---TKPY 180

Query: 150 EAPEL-----WMPYSVTQKCDVFSFGMLLFE-VVGRR 180
            APE+        YS     D +S G+  +E + GRR
Sbjct: 181 MAPEMFSSRKGAGYSFA--VDWWSLGVTAYELLRGRR 215

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 25/142 (17%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           Y+   K+ +G   L    V  +KG+ YL +   +++VH D+   +VL+      K  DFG
Sbjct: 106 YVREHKDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFG 162

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVVGRR 180
           LAKL   E     + G +       P  WM      + + T + DV+S+G+ ++E++   
Sbjct: 163 LAKLLGAEEKEYHAEGGK------VPIKWMALESILHRIYTHQSDVWSYGVTVWELM--- 213

Query: 181 RNLEKEISEGQEWFPKWGREEV 202
                  + G + +      E+
Sbjct: 214 -------TFGSKPYDGIPASEI 228

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 12/112 (10%)

Query: 68  LLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL 127
           +L K   +    L ++ ++  KG+ YL E+   KI+H D+KP ++L++     K  DFG+
Sbjct: 121 VLKKAGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGV 178

Query: 128 AKLYNREHTHITSTGRRRTPGCE---APELWMPYSVTQKCDVFSFGMLLFEV 176
           +         +  +      G     +PE       + + D++S G+ L E+
Sbjct: 179 S-------GQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEM 223

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 34/140 (24%), Positives = 51/140 (36%), Gaps = 18/140 (12%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL   ++ +G  QL        +G+AYLH    Q  +H D+   +VLLD +   K  DFG
Sbjct: 125 YL--PRHSIGLAQLLLFAQQICEGMAYLHA---QHYIHRDLAARNVLLDNDRLVKIGDFG 179

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV--G 178
           LAK     H +        +P       W               DV+SFG+ L+E++   
Sbjct: 180 LAKAVPEGHEYYRVREDGDSPVF-----WYAPECLKEYKFYYASDVWSFGVTLYELLTHC 234

Query: 179 RRRNLEKEISEGQEWFPKWG 198
                            +  
Sbjct: 235 DSSQSPPTKFLELIGIAQGQ 254

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 12/91 (13%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRR 145
           + + Y H+     I+H D+KP  VLL   + +   K   FG+A           + GR  
Sbjct: 141 EALRYCHD---NNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGL--VAGGRVG 195

Query: 146 TPGCEAPE--LWMPYSVTQKCDVFSFGMLLF 174
           TP   APE     PY   +  DV+  G++LF
Sbjct: 196 TPHFMAPEVVKREPYG--KPVDVWGCGVILF 224

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 13/91 (14%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRR 145
           + IAY H      IVH ++KPE++LL    +    K ADFGLA   N         G   
Sbjct: 139 ESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAG--- 192

Query: 146 TPGCEAPELWM--PYSVTQKCDVFSFGMLLF 174
           TPG  +PE+    PYS  +  D+++ G++L+
Sbjct: 193 TPGYLSPEVLKKDPYS--KPVDIWACGVILY 221

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 20/135 (14%)

Query: 71  KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL 130
               L   QL ++    + G+AY+        VH D++  ++L+ EN   K ADFGLA+L
Sbjct: 273 TGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARL 329

Query: 131 YNREHTHITSTGR---RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI 187
                       +   + T    APE  +    T K DV+SFG+LL E+           
Sbjct: 330 IEDNEYTARQGAKFPIKWT----APEAALYGRFTIKSDVWSFGILLTELT---------- 375

Query: 188 SEGQEWFPKWGREEV 202
           ++G+  +P     EV
Sbjct: 376 TKGRVPYPGMVNREV 390

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 60.7 bits (147), Expect = 3e-11
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 20/135 (14%)

Query: 71  KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL 130
               L   QL ++    + G+AY+        VH D++  ++L+ EN   K ADFGLA+L
Sbjct: 356 TGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARL 412

Query: 131 YNREHTHITSTGR---RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI 187
                       +   + T    APE  +    T K DV+SFG+LL E+           
Sbjct: 413 IEDNEYTARQGAKFPIKWT----APEAALYGRFTIKSDVWSFGILLTELT---------- 458

Query: 188 SEGQEWFPKWGREEV 202
           ++G+  +P     EV
Sbjct: 459 TKGRVPYPGMVNREV 473

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 12/108 (11%)

Query: 77  FGQLREIEVSTS-----KGIAYLHEECRQKIVHYDIKPESVLLDEN-FFPKAADFGLAKL 130
            G L E           +G+ YLH    ++I+H D+K ++VLL  +       DFG A  
Sbjct: 144 MGCLPEDRALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHALC 200

Query: 131 YNREHTHITSTGRRRTPGCE---APELWMPYSVTQKCDVFSFGMLLFE 175
              +    +       PG E   APE+ M      K D++S   ++  
Sbjct: 201 LQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLH 248

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 59.9 bits (146), Expect = 4e-11
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFP----KAADFGLAKLYNREHTHITSTGRRR 145
           G+ YLH    ++I H+D+KPE+++L +   P    K  DFG+A      +      G   
Sbjct: 120 GVHYLHS---KRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFG--- 173

Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           TP   APE+     +  + D++S G++ +
Sbjct: 174 TPEFVAPEIVNYEPLGLEADMWSIGVITY 202

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 10/89 (11%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFP----KAADFGLAKLYNREHTHITSTGRRR 145
           G+ YLH    +KI H+D+KPE+++L +   P    K  DFGLA             G   
Sbjct: 127 GVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFG--- 180

Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           TP   APE+     +  + D++S G++ +
Sbjct: 181 TPEFVAPEIVNYEPLGLEADMWSIGVITY 209

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
           G+ YLH+     IVH D+KP+++LL         K  DFG+++            G   T
Sbjct: 143 GVYYLHQ---NNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMG---T 196

Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           P   APE+     +T   D+++ G++ +
Sbjct: 197 PEYLAPEILNYDPITTATDMWNIGIIAY 224

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 59.8 bits (145), Expect = 5e-11
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 13/93 (13%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTP 147
            I  +H+      VH DIKP+++L+D N   + ADFG       + T  +S   G   TP
Sbjct: 187 AIDSVHQ---LHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVG---TP 240

Query: 148 GCEAPELWMPYSVTQK-----CDVFSFGMLLFE 175
              +PE+       +      CD +S G+ ++E
Sbjct: 241 DYISPEILQAMEGGKGRYGPECDWWSLGVCMYE 273

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 59.3 bits (144), Expect = 6e-11
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 14/117 (11%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL   K  +   +L +      KG+ YL     ++ +H D+   ++L++     K  DFG
Sbjct: 134 YLQKHKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFG 190

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
           L K+  ++  +        +P       W        S  +   DV+SFG++L+E+ 
Sbjct: 191 LTKVLPQDKEYYKVKEPGESPIF-----WYAPESLTESKFSVASDVWSFGVVLYELF 242

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 59.2 bits (144), Expect = 6e-11
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 7/101 (6%)

Query: 82  EIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST 141
                   GI + H     +IVH DIKP+++L+D N   K  DFG+AK  +   T +T T
Sbjct: 115 NFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSE--TSLTQT 169

Query: 142 GRRR-TPGCEAPELWMPYSVTQKCDVFSFGMLLFE-VVGRR 180
                T    +PE     +  +  D++S G++L+E +VG  
Sbjct: 170 NHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEP 210

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 10/89 (11%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLL----DENFFPKAADFGLAKLYNREHTHITSTGRRR 145
           G+ YLH     +I H+D+KPE+++L          K  DFGLA   +  +      G   
Sbjct: 126 GVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFG--- 179

Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           TP   APE+     +  + D++S G++ +
Sbjct: 180 TPEFVAPEIVNYEPLGLEADMWSIGVITY 208

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFP-KAADFGLAKLYNREHTHITST-GR 143
           K + YLH    Q +VH D+KP ++L      N    +  DFG AK    E+  + +    
Sbjct: 127 KTVEYLHA---QGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCY- 182

Query: 144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
             T    APE+         CD++S G+LL+
Sbjct: 183 --TANFVAPEVLERQGYDAACDIWSLGVLLY 211

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 59.3 bits (144), Expect = 6e-11
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLD-ENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           KG+ +LH      I+H D+K +++ +       K  D GLA L           G   TP
Sbjct: 140 KGLQFLHT-RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAK-AVIG---TP 194

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFE 175
              APE++      +  DV++FGM + E
Sbjct: 195 EFMAPEMYEE-KYDESVDVYAFGMCMLE 221

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 59.2 bits (144), Expect = 6e-11
 Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 14/117 (11%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL   K  +   +L +      KG+ YL     ++ +H D+   ++L++     K  DFG
Sbjct: 103 YLQKHKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFG 159

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
           L K+  ++           +P       W        S  +   DV+SFG++L+E+ 
Sbjct: 160 LTKVLPQDKEFFKVKEPGESPIF-----WYAPESLTESKFSVASDVWSFGVVLYELF 211

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 59.3 bits (144), Expect = 7e-11
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 10/89 (11%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFP----KAADFGLAKLYNREHTHITSTGRRR 145
           G+ YLH    +KI H+D+KPE+++L +   P    K  DFGLA             G   
Sbjct: 127 GVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFG--- 180

Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           TP   APE+     +  + D++S G++ +
Sbjct: 181 TPEFVAPEIVNYEPLGLEADMWSIGVITY 209

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 59.2 bits (144), Expect = 7e-11
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 17/118 (14%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTP 147
           G+ +LH    + IV+ D+K +++LLD++   K ADFG+ K  N      T+T  G   TP
Sbjct: 130 GLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFGMCKE-NMLGDAKTNTFCG---TP 182

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKW 197
              APE+ +        D +SFG+LL+E ++G+          L   I     ++P+W
Sbjct: 183 DYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRW 240

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 22/136 (16%)

Query: 71  KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL 130
           + +     +L +     ++G+A++ +   +  +H D++  ++L+  +   K ADFGLA++
Sbjct: 277 EGSKQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLARV 333

Query: 131 YNREHTHITSTGR----RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE 186
              ++ +    G     + T    APE     S T K DV+SFG+LL E+V         
Sbjct: 334 IE-DNEYTAREGAKFPIKWT----APEAINFGSFTIKSDVWSFGILLMEIV--------- 379

Query: 187 ISEGQEWFPKWGREEV 202
            + G+  +P     EV
Sbjct: 380 -TYGRIPYPGMSNPEV 394

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITST-GRR 144
             ++++H+     +VH D+KPE++L    ++N   K  DFG A+L   ++  + +     
Sbjct: 117 SAVSHMHD---VGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCF-- 171

Query: 145 RTPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
            T    APEL       + CD++S G++L+
Sbjct: 172 -TLHYAAPELLNQNGYDESCDLWSLGVILY 200

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 21/108 (19%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
            L +I VS  K + +LH +    ++H D+KP +VL++     K  DFG++        ++
Sbjct: 110 ILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDFGISG-------YL 160

Query: 139 TSTGRRRT-PGCE---APE------LWMPYSVTQKCDVFSFGMLLFEV 176
                +    GC+   APE          YSV  K D++S G+ + E+
Sbjct: 161 VDDVAKDIDAGCKPYMAPERINPELNQKGYSV--KSDIWSLGITMIEL 206

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 26/143 (18%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L          QL  +      G+ YL +      VH D+   +VL+D N   K +DFG
Sbjct: 140 FLRTHDGQFTIMQLVGMLRGVGAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFG 196

Query: 127 LAK-LYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVVGR 179
           L++ L +      T+TG +       P  W       +   +   DV+SFG++++EV+  
Sbjct: 197 LSRVLEDDPDAAYTTTGGK------IPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVL-- 248

Query: 180 RRNLEKEISEGQEWFPKWGREEV 202
                   + G+  +      +V
Sbjct: 249 --------AYGERPYWNMTNRDV 263

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 25/142 (17%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           Y+   K+ +G   L    V  +KG+ YL +   +++VH D+   +VL+      K  DFG
Sbjct: 106 YVREHKDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFG 162

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVVGRR 180
           LAKL   E     + G +       P  WM      + + T + DV+S+G+ ++E++   
Sbjct: 163 LAKLLGAEEKEYHAEGGK------VPIKWMALESILHRIYTHQSDVWSYGVTVWELM--- 213

Query: 181 RNLEKEISEGQEWFPKWGREEV 202
                  + G + +      E+
Sbjct: 214 -------TFGSKPYDGIPASEI 228

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 14/117 (11%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L   +  L   +L        KG+ YL     ++ VH D+   ++L++     K ADFG
Sbjct: 116 FLQRHRARLDASRLLLYSSQICKGMEYLGS---RRCVHRDLAARNILVESEAHVKIADFG 172

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
           LAKL   +  +       ++P       W        ++ +++ DV+SFG++L+E+ 
Sbjct: 173 LAKLLPLDKDYYVVREPGQSPIF-----WYAPESLSDNIFSRQSDVWSFGVVLYELF 224

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLL--DENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           G+ ++HE     IVH DIKPE+++    +    K  DFGLA   N +     +T    T 
Sbjct: 161 GLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTA---TA 214

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLF 174
              APE+     V    D+++ G+L +
Sbjct: 215 EFAAPEIVDREPVGFYTDMWAIGVLGY 241

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 15/118 (12%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           ++   +       L    +  ++G+ YL E   QK VH D+   + +LDE+F  K ADFG
Sbjct: 113 FIRSPQRNPTVKDLISFGLQVARGMEYLAE---QKFVHRDLAARNCMLDESFTVKVADFG 169

Query: 127 LAK-LYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
           LA+ + +RE+        ++      P  W           T K DV+SFG+LL+E++
Sbjct: 170 LARDILDREYY-----SVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELL 222

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL--DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
           + + +LH      I H+DI+PE+++     +   K  +FG A+                 
Sbjct: 113 EALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFT---A 166

Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           P   APE+     V+   D++S G L++
Sbjct: 167 PEYYAPEVHQHDVVSTATDMWSLGTLVY 194

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 59.2 bits (143), Expect = 1e-10
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 14/137 (10%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L+ K+  +    + E+    S G+ YL E   +  VH ++   +VLL    + K +DFG
Sbjct: 425 FLVGKREEIPVSNVAELLHQVSMGMKYLEE---KNFVHRNLAARNVLLVNRHYAKISDFG 481

Query: 127 LAKLYNREHTHITSTGRRRTP-GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEK 185
           L+K    + ++ T+    + P    APE       + + DV+S+G+ ++E          
Sbjct: 482 LSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEA--------- 532

Query: 186 EISEGQEWFPKWGREEV 202
            +S GQ+ + K    EV
Sbjct: 533 -LSYGQKPYKKMKGPEV 548

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 15/117 (12%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           ++   +  LG   L    V  +KG+ YL E     +VH ++   +VLL      + ADFG
Sbjct: 104 HVRQHRGALGPQLLLNWGVQIAKGMYYLEE---HGMVHRNLAARNVLLKSPSQVQVADFG 160

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
           +A L   +   +  +  +       P  WM      +   T + DV+S+G+ ++E++
Sbjct: 161 VADLLPPDDKQLLYSEAK------TPIKWMALESIHFGKYTHQSDVWSYGVTVWELM 211

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 10/90 (11%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTP 147
            + +LH+     I++ DIK E++LLD N      DFGL+K +  + T       G   T 
Sbjct: 171 ALEHLHK---LGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCG---TI 224

Query: 148 GCEAPE--LWMPYSVTQKCDVFSFGMLLFE 175
              AP+          +  D +S G+L++E
Sbjct: 225 EYMAPDIVRGGDSGHDKAVDWWSLGVLMYE 254

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 26/137 (18%)

Query: 70  CKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK 129
             +++LG   L +  +   + + YL        VH D+   +VL+ E+   K +DFGL  
Sbjct: 281 RGRSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLT- 336

Query: 130 LYNREHTHITSTGR---RRTPGCEAPELWMPYSV-TQKCDVFSFGMLLFEVVGRRRNLEK 185
              +E +    TG+   + T    APE  +     + K DV+SFG+LL+E+         
Sbjct: 337 ---KEASSTQDTGKLPVKWT----APE-ALREKKFSTKSDVWSFGILLWEIY-------- 380

Query: 186 EISEGQEWFPKWGREEV 202
             S G+  +P+   ++V
Sbjct: 381 --SFGRVPYPRIPLKDV 395

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 10/89 (11%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRR 145
           KG+ ++HE      VH D+KPE+++      N   K  DFGL    + + +   +TG   
Sbjct: 266 KGLCHMHE---NNYVHLDLKPENIMFTTKRSNEL-KLIDFGLTAHLDPKQSVKVTTG--- 318

Query: 146 TPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
           T    APE+     V    D++S G+L +
Sbjct: 319 TAEFAAPEVAEGKPVGYYTDMWSVGVLSY 347

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 58.4 bits (141), Expect = 2e-10
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 15/112 (13%)

Query: 72  KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY 131
           K+ L    L       +KG+ +L     +K +H D+   ++LL E    K  DFGLA+  
Sbjct: 187 KDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDI 243

Query: 132 NREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
            ++  ++     R       P  WM        V T + DV+SFG+LL+E+ 
Sbjct: 244 YKDPDYVRKGDAR------LPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIF 289

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 10/114 (8%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L  +K  L    L       S  +AYL     ++ VH DI   +VL+  N   K  DFG
Sbjct: 480 FLQVRKFSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFG 536

Query: 127 LAKLYNREHTHITSTGR---RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           L++       +  S G+   +      APE       T   DV+ FG+ ++E++
Sbjct: 537 LSRYMEDSTYYKASKGKLPIKWM----APESINFRRFTSASDVWMFGVCMWEIL 586

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 15/118 (12%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           ++  + +      L    +  +KG+ +L     +K VH D+   + +LDE F  K ADFG
Sbjct: 181 FIRNETHNPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFG 237

Query: 127 LAK-LYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
           LA+ +Y++E   + +    + P       WM          T K DV+SFG+LL+E++
Sbjct: 238 LARDMYDKEFDSVHNKTGAKLPVK-----WMALESLQTQKFTTKSDVWSFGVLLWELM 290

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 14/92 (15%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITST-GRR 144
           + + + H+     +VH ++KPE++LL    +    K ADFGLA     E        G  
Sbjct: 121 EAVLHCHQ---MGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAG-- 175

Query: 145 RTPGCEAPELWM--PYSVTQKCDVFSFGMLLF 174
            TPG  +PE+    PY   +  D+++ G++L+
Sbjct: 176 -TPGYLSPEVLRKDPYG--KPVDLWACGVILY 204

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 13/93 (13%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR-TPG 148
            ++YLH      +V+ D+KPE+++L E    K  D G           I S G    TPG
Sbjct: 194 ALSYLH---SIGLVYNDLKPENIMLTEE-QLKLIDLGAVS-------RINSFGYLYGTPG 242

Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
            +APE+      T   D+++ G  L  +     
Sbjct: 243 FQAPEIVR-TGPTVATDIYTVGRTLAALTLDLP 274

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 9/88 (10%)

Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHTHITST--GRRRTP 147
           + YLH    + I+H D+KPE++LL+E+   +  DFG AK L         ++  G   T 
Sbjct: 143 LEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVG---TA 196

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFE 175
              +PEL    S  +  D+++ G ++++
Sbjct: 197 QYVSPELLTEKSACKSSDLWALGCIIYQ 224

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 15/121 (12%)

Query: 60  FLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF 119
           FL  G    +  +  L   Q+  +  +  + +AYLH    Q ++H DIK +S+LL  +  
Sbjct: 123 FLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHA---QGVIHRDIKSDSILLTLDGR 179

Query: 120 PKAADFGLAKLYNREHTHITSTGRRR-----TPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
            K +DFG           I+    +R     TP   APE+        + D++S G+++ 
Sbjct: 180 VKLSDFGFC-------AQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVI 232

Query: 175 E 175
           E
Sbjct: 233 E 233

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 58.1 bits (140), Expect = 3e-10
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 17/118 (14%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTP 147
           G+ +L     + I++ D+K ++V+LD     K ADFG+ K  N      T T  G   TP
Sbjct: 454 GLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKE-NIWDGVTTKTFCG---TP 506

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKW 197
              APE+       +  D ++FG+LL+E + G+          L + I E    +PK 
Sbjct: 507 DYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKS 564

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 26/143 (18%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L  K       QL  +    + G+ YL        VH D+   ++L++ N   K +DFG
Sbjct: 136 FLREKDGEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDFG 192

Query: 127 LAK-LYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVVGR 179
           L++ L +      T++G +       P  W       Y   T   DV+SFG++++EV+  
Sbjct: 193 LSRVLEDDPEATYTTSGGK------IPIRWTAPEAISYRKFTSASDVWSFGIVMWEVM-- 244

Query: 180 RRNLEKEISEGQEWFPKWGREEV 202
                   + G+  + +    EV
Sbjct: 245 --------TYGERPYWELSNHEV 259

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTP 147
            + YLH    + +V+ DIK E+++LD++   K  DFGL K           T  G   TP
Sbjct: 117 ALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKE-GISDGATMKTFCG---TP 169

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKW 197
              APE+       +  D +  G++++E + GR          L + I   +  FP+ 
Sbjct: 170 EYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRT 227

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 20/112 (17%)

Query: 74  ILGFGQLREIEVS-----TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA 128
           +L  G L E +++       KG+ YLH    +K +H DIK  +VLL E+   K ADFG+A
Sbjct: 110 LLEPGPLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVA 166

Query: 129 KLYNREHTHITSTGRRR-----TPGCEAPELWMPYSVTQKCDVFSFGMLLFE 175
                    +T T  +R     TP   APE+    +   K D++S G+   E
Sbjct: 167 -------GQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIE 211

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 17/118 (14%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTP 147
            + +LH+   + I++ D+KPE+++L+     K  DFGL K  +     +T T  G   T 
Sbjct: 133 ALGHLHQ---KGIIYRDLKPENIMLNHQGHVKLTDFGLCKE-SIHDGTVTHTFCG---TI 185

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKW 197
              APE+ M     +  D +S G L+++ + G        R+    +I + +   P +
Sbjct: 186 EYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPY 243

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 35/118 (29%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTP 147
            + YLH      IV+ D+KPE++LLD        DFGL K  N EH   TST  G   TP
Sbjct: 151 ALGYLHS---LNIVYRDLKPENILLDSQGHIVLTDFGLCKE-NIEHNSTTSTFCG---TP 203

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKW 197
              APE+       +  D +  G +L+E + G           +   I          
Sbjct: 204 EYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLKPN 261

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 57.4 bits (139), Expect = 4e-10
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 16/118 (13%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTP 147
            + YLH E  + +V+ D+K E+++LD++   K  DFGL K    +      T  G   TP
Sbjct: 260 ALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCKE-GIKDGATMKTFCG---TP 313

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKW 197
              APE+       +  D +  G++++E + GR          L + I   +  FP+ 
Sbjct: 314 EYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRT 371

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 57.2 bits (139), Expect = 4e-10
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 17/118 (14%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTP 147
           G+ +L     + I++ D+K ++V+LD     K ADFG+ K  N      T T  G   TP
Sbjct: 133 GLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKE-NIWDGVTTKTFCG---TP 185

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKW 197
              APE+       +  D ++FG+LL+E + G+          L + I E    +PK 
Sbjct: 186 DYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKS 243

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 17/118 (14%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTP 147
            + +LH+   + I++ D+K ++VLLD     K ADFG+ K     +   T+T  G   TP
Sbjct: 136 ALMFLHD---KGIIYRDLKLDNVLLDHEGHCKLADFGMCKE-GICNGVTTATFCG---TP 188

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKW 197
              APE+          D ++ G+LL+E + G          +L + I   +  +P W
Sbjct: 189 DYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTW 246

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 56.6 bits (137), Expect = 6e-10
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 14/91 (15%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT 146
           GI ++H+     I+H D+KPE++L    D     K  DFGLA+ Y        + G   T
Sbjct: 199 GIRHMHQ---MYILHLDLKPENILCVNRDAKQI-KIIDFGLARRYKPREKLKVNFG---T 251

Query: 147 PGCEAPELWMPYSVTQKCDVFSFG----MLL 173
           P   APE+     V+   D++S G    MLL
Sbjct: 252 PEFLAPEVVNYDFVSFPTDMWSVGVIAYMLL 282

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 56.4 bits (137), Expect = 6e-10
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 17/118 (14%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTP 147
            + +LH      I++ D+KPE++LLDE    K  DFGL+K  + +H     +  G   T 
Sbjct: 138 ALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKE-SIDHEKKAYSFCG---TV 190

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKW 197
              APE+      TQ  D +SFG+L+FE + G        R+     I + +   P++
Sbjct: 191 EYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQF 248

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 56.1 bits (136), Expect = 6e-10
 Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 24/142 (16%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L+ K+  +    + E+    S G+ YL E   +  VH D+   +VLL    + K +DFG
Sbjct: 99  FLVGKREEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFG 155

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVVGRR 180
           L+K    + ++ T+    +      P  W       +   + + DV+S+G+ ++E     
Sbjct: 156 LSKALGADDSYYTARSAGKW-----PLKWYAPECINFRKFSSRSDVWSYGVTMWEA---- 206

Query: 181 RNLEKEISEGQEWFPKWGREEV 202
                 +S GQ+ + K    EV
Sbjct: 207 ------LSYGQKPYKKMKGPEV 222

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 56.1 bits (136), Expect = 7e-10
 Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 16/117 (13%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L  +K  L    L       S  +AYL     ++ VH DI   +VL+  N   K  DFG
Sbjct: 105 FLQVRKYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFG 161

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
           L++       +  S G+        P  WM      +   T   DV+ FG+ ++E++
Sbjct: 162 LSRYMEDSTYYKASKGK-------LPIKWMAPESINFRRFTSASDVWMFGVCMWEIL 211

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 56.2 bits (136), Expect = 8e-10
 Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 38/148 (25%)

Query: 46  NLV---GSEDTETYIKGFL---AMGPFYLLCKKNILGFGQLREIEVSTS-------KGIA 92
           N+V   GS     +IK F+     G    L +     +G L++ E +         +G+ 
Sbjct: 80  NIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSK---WGPLKDNEQTIGFYTKQILEGLK 136

Query: 93  YLHEECRQKIVHYDIKPESVLLD-ENFFPKAADFGLAKLYNREHTHITS-TGRRRTPGCE 150
           YLH+    +IVH DIK ++VL++  +   K +DFG +K     +    + TG   T    
Sbjct: 137 YLHD---NQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTG---TL--- 187

Query: 151 APELWM--------PYSVTQKCDVFSFG 170
               +M        P    +  D++S G
Sbjct: 188 ---QYMAPEIIDKGPRGYGKAADIWSLG 212

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 56.2 bits (136), Expect = 8e-10
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 20/108 (18%)

Query: 78  GQLREIEVS-----TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN 132
             L E E++     T KG+ YLH     + +H DIK  ++LL+     K ADFG+A    
Sbjct: 120 KTLTEDEIATILQSTLKGLEYLHF---MRKIHRDIKAGNILLNTEGHAKLADFGVA---- 172

Query: 133 REHTHITSTGRRR-----TPGCEAPELWMPYSVTQKCDVFSFGMLLFE 175
                +T T  +R     TP   APE+          D++S G+   E
Sbjct: 173 ---GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIE 217

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 56.3 bits (136), Expect = 9e-10
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 19/97 (19%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTP 147
            I  +H       VH DIKP+++LLD     + ADFG       + T  +    G   TP
Sbjct: 174 AIDSVHR---LGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVG---TP 227

Query: 148 GCEAPEL---------WMPYSVTQKCDVFSFGMLLFE 175
              +PE+            Y    +CD ++ G+  +E
Sbjct: 228 DYLSPEILQAVGGGPGTGSY--GPECDWWALGVFAYE 262

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 56.2 bits (136), Expect = 9e-10
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)

Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTPG 148
           +  +H       +H D+KP+++LLD++   K ADFG     N+E      T  G   TP 
Sbjct: 181 LDAIHS---MGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVG---TPD 234

Query: 149 CEAPEL------WMPYSVTQKCDVFSFGMLLFE 175
             +PE+         Y   ++CD +S G+ L+E
Sbjct: 235 YISPEVLKSQGGDGYY--GRECDWWSVGVFLYE 265

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 55.7 bits (135), Expect = 9e-10
 Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 26/139 (18%)

Query: 70  CKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK 129
           C +  +    L  +    S  + YL +   +  +H D+   + L+ EN   K ADFGL++
Sbjct: 103 CNRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSR 159

Query: 130 LYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVVGRRRNL 183
           L     T+    G +       P  W       Y+  + K DV++FG+LL+E+       
Sbjct: 160 LMT-GDTYTAHAGAK------FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA------ 206

Query: 184 EKEISEGQEWFPKWGREEV 202
               + G   +P     +V
Sbjct: 207 ----TYGMSPYPGIDLSQV 221

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 15/123 (12%)

Query: 60  FLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF 119
           +LA G    +  +  +  GQ+  +     + + +LH     +++H DIK +++LL  +  
Sbjct: 98  YLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGS 154

Query: 120 PKAADFGLAKLYNREHTHITSTGRRR-----TPGCEAPELWMPYSVTQKCDVFSFGMLLF 174
            K  DFG           IT    +R     TP   APE+    +   K D++S G++  
Sbjct: 155 VKLTDFGFC-------AQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAI 207

Query: 175 EVV 177
           E++
Sbjct: 208 EMI 210

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 26/143 (18%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L          QL  +    + G+ YL +      VH D+   ++L++ N   K +DFG
Sbjct: 136 FLRKHDAQFTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFG 192

Query: 127 LAK-LYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVVGR 179
           L + L +      T+ G +       P  W       Y   T   DV+S+G++L+EV   
Sbjct: 193 LGRVLEDDPEAAYTTRGGK------IPIRWTSPEAIAYRKFTSASDVWSYGIVLWEV--- 243

Query: 180 RRNLEKEISEGQEWFPKWGREEV 202
                  +S G+  + +   ++V
Sbjct: 244 -------MSYGERPYWEMSNQDV 259

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 15/118 (12%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           ++  + +      L    +  +KG+ YL     +K VH D+   + +LDE F  K ADFG
Sbjct: 117 FIRNETHNPTVKDLIGFGLQVAKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFG 173

Query: 127 LAK-LYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
           LA+ +Y++E+  + +    + P       WM          T K DV+SFG+LL+E++
Sbjct: 174 LARDMYDKEYYSVHNKTGAKLPVK-----WMALESLQTQKFTTKSDVWSFGVLLWELM 226

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 26/142 (18%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL  ++ +     L  + +   +G+AYL E     ++H D+   + L+ EN   K +DFG
Sbjct: 93  YLRTQRGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFG 149

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVVGRR 180
           + +        +       + G + P  W       +S  + K DV+SFG+L++EV    
Sbjct: 150 MTRF-------VLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVF--- 199

Query: 181 RNLEKEISEGQEWFPKWGREEV 202
                  SEG+  +      EV
Sbjct: 200 -------SEGKIPYENRSNSEV 214

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 26/142 (18%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL   ++     QL E+     + + YL     ++ +H D+   + L+++    K +DFG
Sbjct: 109 YLREMRHRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFG 165

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVVGRR 180
           L++        +       + G + P  W P     YS  + K D+++FG+L++E+    
Sbjct: 166 LSRY-------VLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIY--- 215

Query: 181 RNLEKEISEGQEWFPKWGREEV 202
                  S G+  + ++   E 
Sbjct: 216 -------SLGKMPYERFTNSET 230

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 13/95 (13%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           KG+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+  + E T    T   R   
Sbjct: 139 KGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYR--- 192

Query: 149 CEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
             APE+   WM Y  TQ  D++S G ++ E++  +
Sbjct: 193 --APEVILNWMRY--TQTVDIWSVGCIMAEMITGK 223

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 26/142 (18%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL      L   QL E+     +G+A+L      + +H D+   + L+D +   K +DFG
Sbjct: 93  YLRSHGKGLEPSQLLEMCYDVCEGMAFLES---HQFIHRDLAARNCLVDRDLCVKVSDFG 149

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVVGRR 180
           + +        +       + G + P  W       Y   + K DV++FG+L++EV    
Sbjct: 150 MTRY-------VLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVF--- 199

Query: 181 RNLEKEISEGQEWFPKWGREEV 202
                  S G+  +  +   EV
Sbjct: 200 -------SLGKMPYDLYTNSEV 214

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 16/116 (13%)

Query: 66  FYLLCKKNILGF--GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFP--K 121
           + L+ K    GF    +R+   S  + +  LH   + +I+H D+KPE++LL +      K
Sbjct: 186 YELIKKNKFQGFSLPLVRKFAHSILQCLDALH---KNRIIHCDLKPENILLKQQGRSGIK 242

Query: 122 AADFGLAKLYNREHTHITSTGRRRTPGCEAPE--LWMPYSVTQKCDVFSFGMLLFE 175
             DFG +   ++       +   R     APE  L   Y      D++S G +L E
Sbjct: 243 VIDFGSSCYEHQRVYTYIQSRFYR-----APEVILGARYG--MPIDMWSLGCILAE 291

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTP 147
            + YLHE   + I++ D+K ++VLLD     K  D+G+ K         TST  G   TP
Sbjct: 122 ALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKE-GLRPGDTTSTFCG---TP 174

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFE 175
              APE+          D ++ G+L+FE
Sbjct: 175 NYIAPEILRGEDYGFSVDWWALGVLMFE 202

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 15/96 (15%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           +KG+A+L     +  +H D+   ++LL      K  DFGLA+    +  ++     R   
Sbjct: 155 AKGMAFLAS---KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARL-- 209

Query: 148 GCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
               P  WM        V T + DV+S+G+ L+E+ 
Sbjct: 210 ----PVKWMAPESIFNCVYTFESDVWSYGIFLWELF 241

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 16/138 (11%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
            L   +     G L    V  ++G+ YL     ++ +H D+   ++LL      K  DFG
Sbjct: 110 RLRKHQGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDFG 166

Query: 127 LAKLYNREHTHITSTGRRRTPG--CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLE 184
           L +   +   H      R+ P   C APE     + +   D + FG+ L+E+        
Sbjct: 167 LMRALPQNDDHYVMQEHRKVPFAWC-APESLKTRTFSHASDTWMFGVTLWEM-------- 217

Query: 185 KEISEGQEWFPKWGREEV 202
              + GQE +      ++
Sbjct: 218 --FTYGQEPWIGLNGSQI 233

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTP 147
            + YLHE   + I++ D+K ++VLLD     K  D+G+ K         TST  G   TP
Sbjct: 165 ALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKE-GLRPGDTTSTFCG---TP 217

Query: 148 GCEAPELWMPYSVTQKCDVFSFGMLLFE 175
              APE+          D ++ G+L+FE
Sbjct: 218 NYIAPEILRGEDYGFSVDWWALGVLMFE 245

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 16/99 (16%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRR 145
             + +LH    + I H D+KPE++L    ++    K  DF L             +    
Sbjct: 122 SALDFLHN---KGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPEL 178

Query: 146 -----TPGCEAPELWMPYSVTQK-----CDVFSFGMLLF 174
                +    APE+   +S         CD++S G++L+
Sbjct: 179 LTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILY 217

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 54.5 bits (132), Expect = 3e-09
 Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 16/117 (13%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL   KN L    L    +   K +AYL        VH DI   ++L+      K  DFG
Sbjct: 102 YLERNKNSLKVLTLVLYSLQICKAMAYLES---INCVHRDIAVRNILVASPECVKLGDFG 158

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
           L++    E  +  S  R        P  WM      +   T   DV+ F + ++E++
Sbjct: 159 LSRYIEDEDYYKASVTR-------LPIKWMSPESINFRRFTTASDVWMFAVCMWEIL 208

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 13/95 (13%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           KG+ Y+H      +VH D+KP ++ ++E+   K  DFGLA+  + E T    T   R   
Sbjct: 137 KGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYR--- 190

Query: 149 CEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
             APE+   WM Y   Q  D++S G ++ E++  +
Sbjct: 191 --APEVILSWMHY--NQTVDIWSVGCIMAEMLTGK 221

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 25/113 (22%)

Query: 78  GQLREIEVS-----TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN 132
             L E ++        + + +LH    ++I+H D+K  +VL+      + ADFG++    
Sbjct: 112 RGLTEPQIQVVCRQMLEALNFLHS---KRIIHRDLKAGNVLMTLEGDIRLADFGVS---- 164

Query: 133 REHTHITSTGRRR-----TPGCEAPELWMPYSVTQ-----KCDVFSFGMLLFE 175
                   T ++R     TP   APE+ M  ++       K D++S G+ L E
Sbjct: 165 ---AKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIE 214

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 18/96 (18%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           ++G+ YL +   ++ +H D+   ++L+ EN+  K ADFGL+    R           R P
Sbjct: 152 ARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLS----RGQEVYVKKTMGRLP 204

Query: 148 GCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
                  WM      YSV T   DV+S+G+LL+E+V
Sbjct: 205 VR-----WMAIESLNYSVYTTNSDVWSYGVLLWEIV 235

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 17/138 (12%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL   ++ +    + E+    S G+ YL E      VH D+   +VLL    + K +DFG
Sbjct: 107 YLQQNRH-VKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFG 162

Query: 127 LAKLYNREHTHITSTGRRRTPG--CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLE 184
           L+K    +  +  +    + P     APE    Y  + K DV+SFG+L++E         
Sbjct: 163 LSKALRADENYYKAQTHGKWPVKWY-APECINYYKFSSKSDVWSFGVLMWEA-------- 213

Query: 185 KEISEGQEWFPKWGREEV 202
              S GQ+ +      EV
Sbjct: 214 --FSYGQKPYRGMKGSEV 229

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 25/113 (22%)

Query: 78  GQLREIEVS-----TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN 132
             L+E  ++       +G+++LH+    K++H DIK ++VLL EN   K  DFG++    
Sbjct: 124 NTLKEEWIAYICREILRGLSHLHQ---HKVIHRDIKGQNVLLTENAEVKLVDFGVS---- 176

Query: 133 REHTHITSTGRRR-----TPGCEAPELWMPYSVTQ-----KCDVFSFGMLLFE 175
                +  T  RR     TP   APE+             K D++S G+   E
Sbjct: 177 ---AQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIE 226

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 15/96 (15%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           ++G+A+L     +  +H D+   +VLL      K  DFGLA+    +  +I     R   
Sbjct: 174 AQGMAFLAS---KNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARL-- 228

Query: 148 GCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
               P  WM        V T + DV+S+G+LL+E+ 
Sbjct: 229 ----PVKWMAPESIFDCVYTVQSDVWSYGILLWEIF 260

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 53.5 bits (129), Expect = 7e-09
 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 17/97 (17%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHITSTGRRRT 146
           + G+ YL     +  +H D+   + +L E+     ADFGL+ K+Y+ ++       +   
Sbjct: 147 ACGMEYLSS---RNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKL-- 201

Query: 147 PGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
                P  W+       ++ T   DV++FG+ ++E++
Sbjct: 202 -----PVKWLALESLADNLYTVHSDVWAFGVTMWEIM 233

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 53.1 bits (128), Expect = 7e-09
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 17/97 (17%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNREHTHITSTGRRRT 146
           + G+ YL     +  +H D+   + +L ++     ADFGL+K +Y+ ++       +   
Sbjct: 157 ALGMEYLSN---RNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKM-- 211

Query: 147 PGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
                P  W+        V T K DV++FG+ ++E+ 
Sbjct: 212 -----PVKWIAIESLADRVYTSKSDVWAFGVTMWEIA 243

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 53.4 bits (129), Expect = 8e-09
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 15/96 (15%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           +KG+ +L     +K +H D+   ++LL E    K  DFGLA+   ++  ++     R   
Sbjct: 158 AKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARL-- 212

Query: 148 GCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
               P  WM        V T + DV+SFG+LL+E+ 
Sbjct: 213 ----PLKWMAPETIFDRVYTIQSDVWSFGVLLWEIF 244

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 53.0 bits (128), Expect = 8e-09
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 26/134 (19%)

Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L   +L ++    ++G+A++ E   +  +H D++  ++L+ +    K ADFGLA+L   +
Sbjct: 106 LTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIE-D 161

Query: 135 HTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVVGRRRNLEKEIS 188
           + +    G +       P  W       Y   T K DV+SFG+LL E+V          +
Sbjct: 162 NEYTAREGAK------FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIV----------T 205

Query: 189 EGQEWFPKWGREEV 202
            G+  +P     EV
Sbjct: 206 HGRIPYPGMTNPEV 219

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 53.1 bits (128), Expect = 8e-09
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 15/96 (15%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           +KG+ +L     +  VH D+   +VL+      K  DFGLA+    +  ++     R   
Sbjct: 182 AKGMEFLEF---KSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARL-- 236

Query: 148 GCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
               P  WM        + T K DV+S+G+LL+E+ 
Sbjct: 237 ----PVKWMAPESLFEGIYTIKSDVWSYGILLWEIF 268

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 53.1 bits (128), Expect = 9e-09
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 17/97 (17%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHITSTGRRRT 146
           ++G+ YL     +K +H D+   +VL+ E+   K ADFGLA  +++ ++   T+ GR   
Sbjct: 201 ARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRL-- 255

Query: 147 PGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
                P  WM        + T + DV+SFG+LL+E+ 
Sbjct: 256 -----PVKWMAPEALFDRIYTHQSDVWSFGVLLWEIF 287

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 53.1 bits (128), Expect = 9e-09
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 17/97 (17%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHITSTGRRRT 146
           + G+AYL+     K VH D+   + ++ E+F  K  DFG+   +Y  ++      G    
Sbjct: 148 ADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGL--- 201

Query: 147 PGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
                P  WM        V T   DV+SFG++L+E+ 
Sbjct: 202 ----LPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIA 234

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 29/109 (26%)

Query: 80  LREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL-AKLYNREHTHI 138
           LRE      +G+ YLH   +   +H D+K  ++LL E+   + ADFG+ A L        
Sbjct: 127 LRE----VLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLAT---GGD 176

Query: 139 TSTGRRR-----TPGCEAPELWM-PYSVTQ------KCDVFSFGMLLFE 175
            +  + R     TP       WM P  + Q      K D++SFG+   E
Sbjct: 177 ITRNKVRKTFVGTP------CWMAPEVMEQVRGYDFKADIWSFGITAIE 219

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 33/131 (25%)

Query: 68  LLCKKNILGF--GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAA-- 123
            L + N   +    +R +       + +LHE    ++ H D+KPE++L   + F      
Sbjct: 111 FLKENNFQPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNE 167

Query: 124 -----------------DFGLAKLYNREHTHITSTGRRRTPGCEAPE--LWMPYSVTQKC 164
                            DFG A   +  HT I +T   R      PE  L + ++  Q C
Sbjct: 168 HKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYR-----PPEVILELGWA--QPC 220

Query: 165 DVFSFGMLLFE 175
           DV+S G +LFE
Sbjct: 221 DVWSIGCILFE 231

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTPG 148
             YLH      +++ D+KPE++L+D+  + +  DFG AK         T T  G   TP 
Sbjct: 154 FEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAK----RVKGRTWTLCG---TPE 203

Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFE 175
             APE+ +     +  D ++ G+L++E
Sbjct: 204 ALAPEIILSKGYNKAVDWWALGVLIYE 230

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 24/96 (25%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           K + Y+H       VH  +K   +L+  +     +              + S G+R+   
Sbjct: 139 KALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSN-------LSMISHGQRQRVV 188

Query: 149 CEAPEL------WM-PYSVTQ-------KCDVFSFG 170
            + P+       W+ P  + Q       K D++S G
Sbjct: 189 HDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVG 224

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 17/97 (17%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHITSTGRRRT 146
           ++G+ YL     QK +H D+   +VL+ EN   K ADFGLA  + N ++   T+ GR   
Sbjct: 167 ARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRL-- 221

Query: 147 PGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
                P  WM        V T + DV+SFG+L++E+ 
Sbjct: 222 -----PVKWMAPEALFDRVYTHQSDVWSFGVLMWEIF 253

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 52.1 bits (126), Expect = 2e-08
 Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 24/120 (20%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST--GRRRTP 147
            + YLH    + I++ D+KPE++LLD+N   K  DFG AK        +T T  G   TP
Sbjct: 118 ALEYLHS---KDIIYRDLKPENILLDKNGHIKITDFGFAK----YVPDVTYTLCG---TP 167

Query: 148 GCEAPE--LWMPYSVTQKCDVFSFGMLLFE-VVGR-------RRNLEKEISEGQEWFPKW 197
              APE     PY   +  D +SFG+L++E + G             ++I   +  FP +
Sbjct: 168 DYIAPEVVSTKPY--NKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPF 225

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
            GI +LH      I+H D+KP ++++  +   K  DFGLA+           T    T  
Sbjct: 138 CGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF---MMTPYVVTRY 191

Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
             APE+ +     +  D++S G ++ E++   
Sbjct: 192 YRAPEVILGMGYKENVDIWSVGCIMGEMIKGG 223

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 33/131 (25%)

Query: 68  LLCKKNILGF--GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAA-- 123
            + +   L F    +R++     K + +LH     K+ H D+KPE++L  ++ + +A   
Sbjct: 106 FIKENGFLPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNP 162

Query: 124 -----------------DFGLAKLYNREHTHITSTGRRRTPGCEAPE--LWMPYSVTQKC 164
                            DFG A   +  H+ + ST   R     APE  L + +S  Q C
Sbjct: 163 KIKRDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYR-----APEVILALGWS--QPC 215

Query: 165 DVFSFGMLLFE 175
           DV+S G +L E
Sbjct: 216 DVWSIGCILIE 226

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 15/96 (15%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP 147
           S+G+ YL E    K+VH D+   ++L+ E    K +DFGL++    E +++  +  R   
Sbjct: 160 SQGMQYLAE---MKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRI-- 214

Query: 148 GCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
               P  WM        + T + DV+SFG+LL+E+V
Sbjct: 215 ----PVKWMAIESLFDHIYTTQSDVWSFGVLLWEIV 246

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 13/95 (13%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           +G+ Y+H      I+H D+KP ++ ++E+   K  DFGLA+    E T   +T   R   
Sbjct: 143 RGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYR--- 196

Query: 149 CEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
             APE+   WM Y   Q  D++S G ++ E++  R
Sbjct: 197 --APEIMLNWMHY--NQTVDIWSVGCIMAELLTGR 227

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 16/99 (16%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLD-ENFFPKAADFGLAKLY--NREHTHITSTGRRR 145
           K + Y H      I+H D+KP +V++D E+   +  D+GLA+ Y   +E+    ++   +
Sbjct: 141 KALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFK 197

Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRRR 181
                 PEL   +  Y      D++S G +L  ++ R+ 
Sbjct: 198 -----GPELLVDYQMY--DYSLDMWSLGCMLASMIFRKE 229

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 14/114 (12%)

Query: 68  LLCKKNILGF--GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFP--KAA 123
           LL   N  G      R+        + +L       I+H D+KPE++LL        K  
Sbjct: 145 LLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIV 203

Query: 124 DFGLAKLYNREHTHITSTGRRRTPGCEAPE--LWMPYSVTQKCDVFSFGMLLFE 175
           DFG +    +       +   R     +PE  L MPY      D++S G +L E
Sbjct: 204 DFGSSCQLGQRIYQYIQSRFYR-----SPEVLLGMPYD--LAIDMWSLGCILVE 250

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 51.4 bits (124), Expect = 3e-08
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 30/139 (21%)

Query: 70  CKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK 129
             +++LG   L +  +   + + YL        VH D+   +VL+ E+   K +DFGL  
Sbjct: 109 RGRSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLT- 164

Query: 130 LYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVVGRRRNL 183
              +E +    TG+        P  W           + K DV+SFG+LL+E+       
Sbjct: 165 ---KEASSTQDTGK-------LPVKWTAPEALREKKFSTKSDVWSFGILLWEIY------ 208

Query: 184 EKEISEGQEWFPKWGREEV 202
               S G+  +P+   ++V
Sbjct: 209 ----SFGRVPYPRIPLKDV 223

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 17/114 (14%)

Query: 71  KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK- 129
            K  LG  Q+  I    + G+ YL     Q  VH D+   + L+  N   K  DFG+++ 
Sbjct: 126 AKGELGLSQMLHIASQIASGMVYLAS---QHFVHRDLATRNCLVGANLLVKIGDFGMSRD 182

Query: 130 LYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
           +Y+ ++  +             P  WMP     Y   T + DV+SFG++L+E+ 
Sbjct: 183 VYSTDYYRVGGHTM-------LPIRWMPPESIMYRKFTTESDVWSFGVILWEIF 229

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 16/99 (16%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLD-ENFFPKAADFGLAKLY--NREHTH-ITSTGRR 144
           + I  LH      + H DIKP +VL++  +   K  DFG AK    +  +   I S   R
Sbjct: 140 RSIGCLHLPS-VNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVAYICSRYYR 198

Query: 145 RTPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
                 APEL      Y  T   D++S G +  E++   
Sbjct: 199 ------APELIFGNQHY--TTAVDIWSVGCIFAEMMLGE 229

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 17/110 (15%)

Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK-LYNR 133
           LG GQL  +    + G+ YL        VH D+   + L+ +    K  DFG+++ +Y+ 
Sbjct: 155 LGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYST 211

Query: 134 EHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
           ++  +             P  WMP     Y   T + DV+SFG++L+E+ 
Sbjct: 212 DYYRVGGRTM-------LPIRWMPPESILYRKFTTESDVWSFGVVLWEIF 254

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 9/96 (9%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITS-TGRRRTP 147
           +G+ Y+H      ++H D+KP ++LL+     K  DFGLA++ + +H H    T    T 
Sbjct: 139 RGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATR 195

Query: 148 GCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
              APE+      Y  T+  D++S G +L E++  R
Sbjct: 196 WYRAPEIMLNSKGY--TKSIDIWSVGCILAEMLSNR 229

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 17/97 (17%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHITSTGRRRT 146
           ++G+ YL     QK +H D+   +VL+ EN   K ADFGLA  + N ++   T+ GR   
Sbjct: 213 ARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRL-- 267

Query: 147 PGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
                P  WM        V T + DV+SFG+L++E+ 
Sbjct: 268 -----PVKWMAPEALFDRVYTHQSDVWSFGVLMWEIF 299

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 50.5 bits (121), Expect = 7e-08
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 18/99 (18%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLD-ENFFPKAADFGLAKLY--NREHTH-ITSTGRR 144
           + + ++H      I H DIKP+++L++ ++   K  DFG AK    +      I S   R
Sbjct: 152 RAVGFIHS---LGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYR 208

Query: 145 RTPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
                 APEL      Y  T   D++S G +  E++  +
Sbjct: 209 ------APELMLGATEY--TPSIDLWSIGCVFGELILGK 239

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 50.2 bits (121), Expect = 7e-08
 Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 6/52 (11%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTH 137
           +G+A+ H     +++H D+KP+++L++     K ADFGLA+ +    R +TH
Sbjct: 114 QGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTH 162

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 50.2 bits (121), Expect = 7e-08
 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 6/52 (11%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTH 137
           KG+ + H    + ++H D+KP+++L++ N   K A+FGLA+ +    R ++ 
Sbjct: 112 KGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSA 160

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 50.3 bits (121), Expect = 7e-08
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTHITST 141
           + + + H   +   +H D+KPE++L+ ++   K  DFG A+L    +  +    +T
Sbjct: 113 QAVNFCH---KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVAT 165

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 50.3 bits (121), Expect = 9e-08
 Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 6/52 (11%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTH 137
           +G+AY H   RQK++H D+KP+++L++E    K ADFGLA+      + + +
Sbjct: 111 RGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDN 159

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 50.3 bits (121), Expect = 9e-08
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 6/52 (11%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTH 137
           +G+ YLH   +  I+H D+KP ++LLDEN   K ADFGLAK +   NR +TH
Sbjct: 123 QGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTH 171

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 49.9 bits (120), Expect = 9e-08
 Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 6/52 (11%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTH 137
           +G+A+ H   + +I+H D+KP+++L++ +   K ADFGLA+ +    R +TH
Sbjct: 130 RGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTH 178

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 50.0 bits (120), Expect = 9e-08
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 16/98 (16%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFP-KAADFGLAKLY--NREHTHITSTGRRR 145
           + +AY+H      I H DIKP+++LLD      K  DFG AK+      +     +   R
Sbjct: 152 RSLAYIH---SIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYICSRYYR 208

Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
                APEL      Y  T   D++S G ++ E++  +
Sbjct: 209 -----APELIFGATNY--TTNIDIWSTGCVMAELMQGQ 239

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 6/52 (11%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTH 137
            GIAY H    ++++H D+KP+++L++     K ADFGLA+ +    R++TH
Sbjct: 111 NGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTH 159

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 21/103 (20%)

Query: 78  GQLREIEVS-----TSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN 132
             L+E+E++       +G+AYLH      ++H D+K  ++LL E    K  DFG A +  
Sbjct: 149 KPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMA 205

Query: 133 REHTHITSTGRRRTPGCEAPELWM-----PYSVTQKCDVFSFG 170
             ++ +   G   TP   APE+ +      Y    K DV+S G
Sbjct: 206 PANSFV---G---TPYWMAPEVILAMDEGQY--DGKVDVWSLG 240

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN---REHTHITST 141
            GI + H      I+H DIKPE++L+ ++   K  DFG A+        +    +T
Sbjct: 135 NGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVAT 187

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 43/139 (30%)

Query: 68  LLCKKNILGF--GQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAA-- 123
           ++ + N  GF    ++   +   K + YL +     + H D+KPE++LLD+ +F K+   
Sbjct: 125 IITRNNYNGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDPYFEKSLIT 181

Query: 124 -----------------------DFGLAKLYNREHTHITSTGR--RRTPGCEAPE--LWM 156
                                  DFG A   +  H  I +T R  R      APE  L +
Sbjct: 182 VRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINT-RQYR------APEVILNL 234

Query: 157 PYSVTQKCDVFSFGMLLFE 175
            +      D++SFG +L E
Sbjct: 235 GWD--VSSDMWSFGCVLAE 251

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 15/97 (15%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH--THITSTGRRRT 146
            G+  LHE     +VH D+ P ++LL +N      DF LA+    +   TH  +    R 
Sbjct: 145 LGLHVLHE---AGVVHRDLHPGNILLADNNDITICDFNLAREDTADANKTHYVTHRWYR- 200

Query: 147 PGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
               APEL   +  +  T+  D++S G ++ E+  R+
Sbjct: 201 ----APELVMQFKGF--TKLVDMWSAGCVMAEMFNRK 231

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 16/98 (16%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFP-KAADFGLAKLY--NREHTHITSTGRRR 145
           + +AY+H      I H DIKP+++LLD +    K  DFG AK       +     +   R
Sbjct: 167 RSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYR 223

Query: 146 TPGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
                APEL      Y  T   DV+S G +L E++  +
Sbjct: 224 -----APELIFGATDY--TSSIDVWSAGCVLAELLLGQ 254

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 6/52 (11%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY---NREHTH 137
           +G+A+ H     KI+H D+KP+++L+++    K  DFGLA+ +       + 
Sbjct: 119 QGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSS 167

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAK 129
           + I YLH      I H D+KPE++L      N   K  DFG AK
Sbjct: 128 EAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAK 168

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 3/48 (6%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT 136
           +G+ +LH     ++VH D+KP+++L+  +   K ADFGLA++Y+ +  
Sbjct: 131 RGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMA 175

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 20/113 (17%)

Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD---ENFFPKAADFGLAK-L 130
           L    L  +    + G  YL E      +H DI   + LL         K  DFG+A+ +
Sbjct: 137 LAMLDLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDI 193

Query: 131 YNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
           Y   +      G    P       WMP       + T K D +SFG+LL+E+ 
Sbjct: 194 YRASYY--RKGGCAMLPVK-----WMPPEAFMEGIFTSKTDTWSFGVLLWEIF 239

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
            GI +LH      I+H D+KP ++++  +   K  DFGLA+           T    T  
Sbjct: 175 CGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF---MMTPYVVTRY 228

Query: 149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
             APE+ +     +  D++S G ++ E+V  +
Sbjct: 229 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 260

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT 136
           +G+ +LH      IVH D+KPE++L+      K ADFGLA++Y+ +  
Sbjct: 131 RGLDFLH---ANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMA 175

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 11/57 (19%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFP-----KAADFGLAKLY---NREHTH 137
            G+ + H    ++ +H D+KP+++LL  +        K  DFGLA+ +    R+ TH
Sbjct: 143 NGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTH 196

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 27/114 (23%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           K I YLH      ++H D+KP ++LL+     K ADFGL++ +        +        
Sbjct: 120 KVIKYLHS---GGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINEN 176

Query: 149 CE-------------------APEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
            E                   APE+      Y  T+  D++S G +L E++  +
Sbjct: 177 TENFDDDQPILTDYVATRWYRAPEILLGSTKY--TKGIDMWSLGCILGEILCGK 228

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 16/103 (15%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
           + +  LH      ++H D+KP ++L++ N   K  DFGLA++ +      +    +++  
Sbjct: 123 RAVKVLHG---SNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGM 179

Query: 149 CE--------APEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
            E        APE+      Y  ++  DV+S G +L E+  RR
Sbjct: 180 VEFVATRWYRAPEVMLTSAKY--SRAMDVWSCGCILAELFLRR 220

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 20/113 (17%)

Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD---ENFFPKAADFGLAK-L 130
           L    L  +    + G  YL E      +H DI   + LL         K  DFG+A+ +
Sbjct: 178 LAMLDLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDI 234

Query: 131 YNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
           Y   +      G    P       WMP       + T K D +SFG+LL+E+ 
Sbjct: 235 YRAGYY--RKGGCAMLPVK-----WMPPEAFMEGIFTSKTDTWSFGVLLWEIF 280

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 17/97 (17%)

Query: 88  SKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-KLYNREHTHITSTGRRRT 146
           + G+AYL E   +K VH D+   + L+ EN   K ADFGL+  +Y+ ++           
Sbjct: 184 AAGMAYLSE---RKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDA--- 237

Query: 147 PGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
                P  WMP     Y+  T + DV+++G++L+E+ 
Sbjct: 238 ----IPIRWMPPESIFYNRYTTESDVWAYGVVLWEIF 270

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 17/114 (14%)

Query: 71  KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLA-K 129
            K+ L       +    + G+ YL       +VH D+   +VL+ +    K +D GL  +
Sbjct: 121 VKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLATRNVLVYDKLNVKISDLGLFRE 177

Query: 130 LYNREHTHITSTGRRRTPGCEAPELWMP-----YSV-TQKCDVFSFGMLLFEVV 177
           +Y  ++  +             P  WM      Y   +   D++S+G++L+EV 
Sbjct: 178 VYAADYYKLLGNSL-------LPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVF 224

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 47.6 bits (114), Expect = 7e-07
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN 132
            G+ Y+H   R KI+H D+K  +VL+  +   K ADFGLA+ ++
Sbjct: 135 NGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLARAFS 175

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 47.3 bits (113), Expect = 8e-07
 Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLD-ENFFPKAADFGLAKLYNREHTHITS-TGRRRT 146
           +G+ Y+H      ++H D+KP ++ ++ E+   K  DFGLA++ +  ++H    +    T
Sbjct: 131 RGLKYIHS---ANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVT 187

Query: 147 PGCEAPEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
               +P L      Y  T+  D+++ G +  E++  +
Sbjct: 188 KWYRSPRLLLSPNNY--TKAIDMWAAGCIFAEMLTGK 222

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 47.6 bits (113), Expect = 8e-07
 Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 56/152 (36%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL------------------------ 114
            +++I     +G+ YLH +C  +I+H DIKPE++LL                        
Sbjct: 147 CVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPP 204

Query: 115 -------------------------DENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
                                     E    K AD G A   ++  T    T + R    
Sbjct: 205 PSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYR---- 260

Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
            + E+ +        D++S   + FE+     
Sbjct: 261 -SLEVLIGSGYNTPADIWSTACMAFELATGDY 291

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 33/135 (24%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
            G+ Y+H      I+H D+KP + L++++   K  DFGLA+  +      +         
Sbjct: 167 VGVKYVHS---AGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPRED 223

Query: 149 CE-------------------------APEL---WMPYSVTQKCDVFSFGMLLFEVVGRR 180
                                      APEL      Y  T+  DV+S G +  E++   
Sbjct: 224 DMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENY--TEAIDVWSIGCIFAELLNMI 281

Query: 181 RNLEKEISEGQEWFP 195
           +      ++    FP
Sbjct: 282 KENVAYHADRGPLFP 296

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 28/130 (21%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG 148
            G  ++HE     I+H D+KP + LL+++   K  DFGLA+  N E              
Sbjct: 140 LGENFIHE---SGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEE 196

Query: 149 CE--------------------APEL---WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEK 185
                                 APEL      Y  T+  D++S G +  E++   ++   
Sbjct: 197 PGPHNKNLKKQLTSHVVTRWYRAPELILLQENY--TKSIDIWSTGCIFAELLNMLQSHIN 254

Query: 186 EISEGQEWFP 195
           + +     FP
Sbjct: 255 DPTNRFPLFP 264

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 32/127 (25%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDI--------KPESVLLDENF 118
           YL   KN +      E+    +  + +L E     ++H ++        + E        
Sbjct: 102 YLKKNKNCINILWKLEVAKQLAAAMHFLEE---NTLIHGNVCAKNILLIREEDRKTGNPP 158

Query: 119 FPKAADFGLAK-LYNREHTHITSTGRRRTPGCEAPELWMP-------YSVTQKCDVFSFG 170
           F K +D G++  +  ++               +    W+P        ++    D +SFG
Sbjct: 159 FIKLSDPGISITVLPKDIL-------------QERIPWVPPECIENPKNLNLATDKWSFG 205

Query: 171 MLLFEVV 177
             L+E+ 
Sbjct: 206 TTLWEIC 212

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 10/59 (16%)

Query: 89  KGIAYLHEECRQKIVHYDIKPESVLLDENFFP----KAADFGLAKLYN---REHTHITS 140
            GI YLH      ++H D+KP ++L+          K AD G A+L+N   +    +  
Sbjct: 139 DGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDP 194

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKA--ADFGLAKLYNREHTHI 138
           + +LHE    + VH ++  E++ +D     +   A +G A  Y     H+
Sbjct: 172 LEFLHE---NEYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHV 218

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKA--ADFGLAKLY--NREHTHI 138
           + Y+HE    + VH DIK  ++LL      +   AD+GL+  Y  N  H   
Sbjct: 164 LEYIHE---NEYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQY 212

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 7/52 (13%)

Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKA--ADFGLAKLY--NREHTHI 138
           + Y+HE    + VH DIK  ++LL+     +    D+GLA  Y     H   
Sbjct: 165 LEYIHE---HEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAY 213

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 10/92 (10%), Positives = 17/92 (18%), Gaps = 33/92 (35%)

Query: 90  GIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC 149
                H   R  +      P  V +  +     A                          
Sbjct: 141 AADAAH---RAGVALSIDHPSRVRVSIDGDVVLAYPATM--------------------- 176

Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFE-VVGRR 180
                        + D+   G  L+  +V R 
Sbjct: 177 -PD-------ANPQDDIRGIGASLYALLVNRW 200

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.98
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.98
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.98
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.98
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.98
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.98
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.98
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.97
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.97
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.97
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.97
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.97
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.97
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.97
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.97
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.97
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.97
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.97
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.97
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.97
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.97
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.97
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.97
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.97
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.97
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.97
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.97
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.97
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.97
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.97
3niz_A	311	Rhodanese family protein; structural genomics, str	99.97
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.97
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.97
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.97
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.97
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.97
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.97
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.97
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.97
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.97
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.97
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.97
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.97
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.97
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.97
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.97
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.97
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.97
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.97
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.97
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.97
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.97
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.97
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.97
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.97
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.97
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.97
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.97
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.97
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.97
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.97
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.97
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.97
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.97
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.97
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.97
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.97
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.97
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.97
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.97
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.97
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.97
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.97
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.97
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.97
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.97
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.97
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.97
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.97
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.97
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.97
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.97
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.97
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.97
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.97
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.97
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.97
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.97
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.97
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.97
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.97
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.97
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.97
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.97
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.97
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.97
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.97
3bhy_A	283	Death-associated protein kinase 3; death associate	99.97
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.97
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.97
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.97
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.97
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.97
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.97
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.97
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.97
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.97
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.97
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.97
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.97
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.97
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.97
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.97
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.97
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.97
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.97
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.97
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.97
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.97
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.97
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.97
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.97
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.96
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.96
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.96
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.96
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.96
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.96
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.96
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.96
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.96
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.96
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.96
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.96
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.96
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.96
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.96
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.96
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.96
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.96
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.96
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.96
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.96
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.96
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.96
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.96
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.96
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.96
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.96
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.96
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.96
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.96
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.96
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.96
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.96
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.96
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.96
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.96
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.96
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.96
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.96
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.96
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.96
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.96
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.96
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.96
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.96
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.96
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.96
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.96
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.96
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.96
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.96
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.96
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.96
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.96
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.96
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.96
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.96
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.96
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.96
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.96
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.96
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.96
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.96
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.96
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.96
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.95
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.95
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.95
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.95
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.95
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.95
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.95
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.95
3uqc_A	286	Probable conserved transmembrane protein; structur	99.94
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.93
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.92
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.85
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.7
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.45
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.16
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.31
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.18
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.04
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	97.81
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	97.35
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	96.56
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	96.45
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	95.93
3ats_A	357	Putative uncharacterized protein; hypothetical pro	95.67
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	94.57
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	93.41
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	93.27
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	92.62
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	92.39
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	92.37
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	91.31
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	89.58
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	89.39
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	88.97
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	88.67
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	88.55
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	87.76
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	87.42
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	86.26
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	85.95
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	85.21
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	84.97

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=1e-44  Score=287.56  Aligned_cols=185  Identities=19%  Similarity=0.285  Sum_probs=160.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||+|+++.+++.||.|+..............+..|..++...+|||++.      ..+..+++++++++|+|..++.. +
T Consensus        48 V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivmEy~~gG~L~~~i~~~~  127 (311)
T 4aw0_A           48 VVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIG  127 (311)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHHS
T ss_pred             EEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHHHHcC
Confidence            7999999999999998866554444455567888888899999999874      44556789999999999998854 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.+++.++.|++.||+|||+   ++|+||||||+|||++.++.+||+|||+|+.+............+||+.|||||
T Consensus       128 ~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPE  204 (311)
T 4aw0_A          128 SFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPE  204 (311)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCcccCCHH
Confidence            79999999999999999999999   999999999999999999999999999999775444333445678999999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..|+.++||||+||++|||++|++||.+.+.
T Consensus       205 vl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~  239 (311)
T 4aw0_A          205 LLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE  239 (311)
T ss_dssp             HHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             HHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            99999999999999999999999999999987554

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=1.4e-43  Score=284.86  Aligned_cols=180  Identities=20%  Similarity=0.252  Sum_probs=156.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||+|+++.+++.||.|+....   .......+..|..++...+|+||+.      ..+..+++++|+++|+|..++..+.
T Consensus        90 V~~a~~~~tg~~vAiK~i~~~---~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~~  166 (346)
T 4fih_A           90 VCIATVRSSGKLVAVKKMDLR---KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTR  166 (346)
T ss_dssp             EEEEEETTTCCEEEEEEEEGG---GCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTTEEHHHHHHHSC
T ss_pred             EEEEEECCCCCEEEEEEEecC---chhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHcCC
Confidence            799999999999998875433   2233455778888899999999884      3455679999999999999999899


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++.++..++.|++.||+|||+   ++||||||||+|||++.++.+||+|||+|+.......  .....+||+.|||||+
T Consensus       167 l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~--~~~~~~GTp~YmAPEv  241 (346)
T 4fih_A          167 MNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--RRKSLVGTPYWMAPEL  241 (346)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC--CBCCCCSCGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEECCCCCEEEecCcCceecCCCCC--cccccccCcCcCCHHH
Confidence            9999999999999999999999   9999999999999999999999999999987654332  2345689999999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +.+..|+.++||||+||++|||++|++||.+...
T Consensus       242 l~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~  275 (346)
T 4fih_A          242 ISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP  275 (346)
T ss_dssp             HTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred             HCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH
Confidence            9999999999999999999999999999987654

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=1.2e-42  Score=285.82  Aligned_cols=180  Identities=20%  Similarity=0.252  Sum_probs=156.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||+|+++.+++.||.|+....   .......+..|..++...+|+||+.      ..+..+++++|+++|+|..+++.+.
T Consensus       167 V~~a~~~~tg~~vAiK~i~~~---~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~gG~L~~~i~~~~  243 (423)
T 4fie_A          167 VCIATVRSSGKLVAVKKMDLR---KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTR  243 (423)
T ss_dssp             EEEEEETTTCCEEEEEEEEST---TCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHSC
T ss_pred             EEEEEECCCCCEEEEEEEecc---chhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCCCCcHHHHHhccC
Confidence            799999999999998875433   2233455778888899999999884      3455679999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++.++..++.|++.||.|||+   ++||||||||+|||++.++.+||+|||+|+.......  .....+||+.|||||+
T Consensus       244 l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~--~~~~~~GTp~YmAPEv  318 (423)
T 4fie_A          244 MNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--RRKSLVGTPYWMAPEL  318 (423)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC--CBCCCEECTTTCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---CCeecccCCHHHEEEcCCCCEEEecCccceECCCCCc--cccccccCcCcCCHHH
Confidence            9999999999999999999999   9999999999999999999999999999987654322  2345679999999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +.+..|+.++||||+||++|||++|++||.+...
T Consensus       319 l~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~  352 (423)
T 4fie_A          319 ISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP  352 (423)
T ss_dssp             HTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred             HCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH
Confidence            9999999999999999999999999999987654

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=2.9e-42  Score=276.30  Aligned_cols=178  Identities=17%  Similarity=0.148  Sum_probs=146.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||+++++.+++.||.|+.+..        .....|..++...+||||+.      ..+..+++++|+++|+|..+++. +
T Consensus        74 Vy~a~~~~~g~~vAiK~i~~~--------~~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~~  145 (336)
T 4g3f_A           74 VHRMKDKQTGFQCAVKKVRLE--------VFRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQMG  145 (336)
T ss_dssp             EEEEEETTTCCEEEEEEEETT--------TCCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHHHS
T ss_pred             EEEEEECCCCCEEEEEEECHH--------HhHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHHHHHcC
Confidence            799999999999998875421        12345777788889999874      34556789999999999998854 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC-ceEEeeeecceeccccCcc---cccCCCCCCCcc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF-FPKAADFGLAKLYNREHTH---ITSTGRRRTPGC  149 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~-~~kl~dfgl~~~~~~~~~~---~~~~~~~gt~~y  149 (202)
                      .+++.+++.++.|++.||.|||+   ++||||||||+|||++.++ .+||+|||+|+........   ......+||+.|
T Consensus       146 ~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y  222 (336)
T 4g3f_A          146 CLPEDRALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETH  222 (336)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGGEEECTTSCCEEECCCTTCEEC------------CCCCCCGGG
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccCccc
Confidence            79999999999999999999999   9999999999999999987 6999999999976543221   122345799999


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      ||||++.+..|+.++||||+||++|||++|++||.+....
T Consensus       223 mAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~  262 (336)
T 4g3f_A          223 MAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRG  262 (336)
T ss_dssp             CCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCS
T ss_pred             cCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHH
Confidence            9999999999999999999999999999999999875543

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-42  Score=274.06  Aligned_cols=181  Identities=22%  Similarity=0.316  Sum_probs=141.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhcc--C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKK--N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~--~   73 (202)
                      ||+++..+.   ||+|+.+.... ..+...+|..|..+....+|+|++.     ..+...++++|+++|+|..++..  .
T Consensus        52 Vy~~~~~~~---vAvK~~~~~~~-~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmEy~~gGsL~~~l~~~~~  127 (307)
T 3omv_A           52 VYKGKWHGD---VAVKILKVVDP-TPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQET  127 (307)
T ss_dssp             EEEEESSSE---EEEEECCCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCSSCBHHHHHHTSCC
T ss_pred             EEEEEECCc---EEEEEEEecCC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECCeEEEEEEcCCCCCHHHHHhhcCC
Confidence            688876543   56665433221 1223456888999999999999874     23345689999999999998843  4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.++..++.|++.||.|||+   ++||||||||+|||++.++.+||+|||+|+...............||+.|||||
T Consensus       128 ~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE  204 (307)
T 3omv_A          128 KFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPE  204 (307)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHH
Confidence            69999999999999999999999   999999999999999999999999999998765433333345567999999999


Q ss_pred             ccCC---CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMP---YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~---~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+   .+|+.++|||||||++|||+||++||.+..+
T Consensus       205 ~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~  242 (307)
T 3omv_A          205 VIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINN  242 (307)
T ss_dssp             HHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC
T ss_pred             HhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCCh
Confidence            9863   4689999999999999999999999986543

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=8.3e-43  Score=280.73  Aligned_cols=182  Identities=16%  Similarity=0.212  Sum_probs=152.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||+++++.+++.||.|+....... .....++..|..++...+|+||+.      ..+..+++++|+++|+|.+++..  
T Consensus        40 V~~a~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~~gg~L~~~i~~~~  118 (350)
T 4b9d_A           40 AILVKSTEDGRQYVIKEINISRMS-SKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQK  118 (350)
T ss_dssp             EEEEEETTTCCEEEEEEEECTTSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTT
T ss_pred             EEEEEECCCCCEEEEEEEehHHCC-HHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHHcC
Confidence            799999999999998875433221 122346778888899999999884      34556789999999999998843  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       ..+++.+++.++.|++.||.|||+   ++||||||||+|||++.++.+||+|||+|+.......  .....+||+.|||
T Consensus       119 ~~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~--~~~~~~GT~~YmA  193 (350)
T 4b9d_A          119 GVLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVE--LARACIGTPYYLS  193 (350)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHH--HHHHHHSCCTTCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHHHEEECCCCCEEEcccccceeecCCcc--cccccCCCccccC
Confidence             347999999999999999999999   9999999999999999999999999999987643221  1233568999999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ||++.+..|+.++||||+||++|||++|++||.+.+.
T Consensus       194 PE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~  230 (350)
T 4b9d_A          194 PEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM  230 (350)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             HHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH
Confidence            9999999999999999999999999999999987654

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=4.2e-42  Score=270.82  Aligned_cols=178  Identities=20%  Similarity=0.290  Sum_probs=146.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc----------ccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE----------DTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----------~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||+|++..++..||.|........ .....+|..|..+....+|||++...          ...+++++++++|+|..++
T Consensus        42 Vy~a~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy~~gg~L~~~l  120 (290)
T 3fpq_A           42 VYKGLDTETTVEVAWCELQDRKLT-KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYL  120 (290)
T ss_dssp             EEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEECCCSCBHHHHH
T ss_pred             EEEEEECCCCeEEEEEEEchhhCC-HHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEeCCCCCCHHHHH
Confidence            799999999999987765433211 12235688899999999999998532          2246889999999999988


Q ss_pred             cc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEecCCCCcEEEcC-CCceEEeeeecceeccccCcccccCCCCCC
Q 044746           71 KK-NILGFGQLREIEVSTSKGIAYLHEECRQK--IVHYDIKPESVLLDE-NFFPKAADFGLAKLYNREHTHITSTGRRRT  146 (202)
Q Consensus        71 ~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~--iiHrdlk~~nil~~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt  146 (202)
                      .. +.+++..++.++.|++.||.|||+   ++  ||||||||+|||++. ++.+||+|||+|+......    ....+||
T Consensus       121 ~~~~~l~~~~~~~~~~qi~~aL~ylH~---~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~~----~~~~~GT  193 (290)
T 3fpq_A          121 KRFKVMKIKVLRSWCRQILKGLQFLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASF----AKAVIGT  193 (290)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHHHT---SSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTTS----BEESCSS
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHH---CCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCCCc----cCCcccC
Confidence            54 569999999999999999999998   77  999999999999974 7899999999997543221    2345789


Q ss_pred             CcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       147 ~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +.|||||++.+ .|+.++||||+||++|||+||++||.+..
T Consensus       194 p~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~  233 (290)
T 3fpq_A          194 PEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQ  233 (290)
T ss_dssp             CCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCS
T ss_pred             ccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            99999999875 69999999999999999999999997543

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=1e-41  Score=266.67  Aligned_cols=181  Identities=21%  Similarity=0.297  Sum_probs=139.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh-ccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC-KKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~-~~~   73 (202)
                      ||+++++.+++.||.|+.........+...++..|..+....+|||++.      ..+..+++++++ +|+|.+++ +.+
T Consensus        29 V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~-~g~L~~~l~~~~  107 (275)
T 3hyh_A           29 VKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYA-GNELFDYIVQRD  107 (275)
T ss_dssp             EEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECC-CEEHHHHHHHSC
T ss_pred             EEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEeCC-CCCHHHHHHHcC
Confidence            7899999999999988765443333344556788888889999999874      344556889988 56776665 556


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.+++.++.|++.||+|||+   ++|+||||||+|||++.++.+||+|||+|+.......   ....+||+.|||||
T Consensus       108 ~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~---~~~~~GT~~Y~APE  181 (275)
T 3hyh_A          108 KMSEQEARRFFQQIISAVEYCHR---HKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNF---LKTSCGSPNYAAPE  181 (275)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCTTTEEECTTCCEEECCSSCC------------------CTTSCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCcccccCChHHeEECCCCCEEEeecCCCeecCCCCc---cCCeeECcccCChh
Confidence            79999999999999999999999   9999999999999999999999999999986543322   23467899999999


Q ss_pred             ccCCCCC-CchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSV-TQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~-~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..+ +.++||||+||++|||++|++||.+.+.
T Consensus       182 ~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~  217 (275)
T 3hyh_A          182 VISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI  217 (275)
T ss_dssp             HHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             hhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCH
Confidence            9998876 5799999999999999999999986543

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=2.8e-42  Score=273.23  Aligned_cols=183  Identities=22%  Similarity=0.248  Sum_probs=143.6

Q ss_pred             CCccccC---CCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNR---GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||+|++.   ..++.||.|+.+..... .....++..|..++...+|||++.      ..+..+++++++++|+|..++.
T Consensus        40 Vy~a~~~~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~l~  118 (304)
T 3ubd_A           40 VFLVKKISGSDARQLYAMKVLKKATLK-VRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLS  118 (304)
T ss_dssp             EEEEEECSSTTTTCEEEEEEEESEEEE-EEECC------CCCCCCCCTTEECEEEEEEETTEEEEEECCCTTCEEHHHHH
T ss_pred             EEEEEEccCCCCCEEEEEEEEehHHcC-hHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEEcCCCCCHHHHHH
Confidence            6778763   45677888775443222 223345777877888889999874      3455679999999999998885


Q ss_pred             c-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           72 K-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        72 ~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      . +.+++.+++.++.|++.||+|||+   ++|+||||||+|||++.++.+||+|||+|+.......  .....+||+.||
T Consensus       119 ~~~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~--~~~~~~GT~~Ym  193 (304)
T 3ubd_A          119 KEVMFTEEDVKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK--KAYSFCGTVEYM  193 (304)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTSCEEEESSEEEEC-----C--CCCSCCCCGGGC
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHeEEcCCCCEEecccccceeccCCCc--cccccccCcccC
Confidence            4 579999999999999999999999   9999999999999999999999999999986433221  234467899999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |||++.+..|+.++||||+||++|||++|++||.+.+..
T Consensus       194 APE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~  232 (304)
T 3ubd_A          194 APEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRK  232 (304)
T ss_dssp             CHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             CHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHH
Confidence            999999999999999999999999999999999876543

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.2e-41  Score=270.67  Aligned_cols=184  Identities=18%  Similarity=0.169  Sum_probs=149.7

Q ss_pred             CCccccC-----CCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhh
Q 044746            1 MEKPRNR-----GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~   69 (202)
                      |||++..     ..++.||+|..+..  .......+|..|..+....+|||++.      ..+...++++|+++|+|..+
T Consensus        42 Vykg~~~~~~~~~~~~~VAvK~l~~~--~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~  119 (308)
T 4gt4_A           42 VYKGHLFGPAPGEQTQAVAIKTLKDK--AEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEF  119 (308)
T ss_dssp             EEEEEEC-------CEEEEEEECCC---CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCSSCBHHHH
T ss_pred             EEEEEEcCCccCCCCeEEEEEEECcc--cChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEEEEcCCCCcHHHH
Confidence            6777643     35677887765432  22233456888999999999999884      33445799999999999998


Q ss_pred             hcc-----------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceecc
Q 044746           70 CKK-----------------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN  132 (202)
Q Consensus        70 ~~~-----------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~  132 (202)
                      +..                 ..+++.++..++.|++.||.|||+   ++||||||||+|||++.++.+||+|||+++...
T Consensus       120 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~  196 (308)
T 4gt4_A          120 LVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLATRNVLVYDKLNVKISDLGLFREVY  196 (308)
T ss_dssp             HHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCSCCBCGGG
T ss_pred             HHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCCCCCCccccceEECCCCCEEECCcccceecc
Confidence            842                 358999999999999999999999   999999999999999999999999999998765


Q ss_pred             ccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhcc
Q 044746          133 REHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEISE  189 (202)
Q Consensus       133 ~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~~  189 (202)
                      ............||+.|||||++.+..++.++|||||||++|||+| |++||.+....
T Consensus       197 ~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~  254 (308)
T 4gt4_A          197 AADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ  254 (308)
T ss_dssp             GGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH
T ss_pred             CCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHH
Confidence            4443334455678999999999999999999999999999999998 89999876543

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=4.9e-42  Score=271.79  Aligned_cols=183  Identities=17%  Similarity=0.238  Sum_probs=149.7

Q ss_pred             CCccccC-----CCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhh
Q 044746            1 MEKPRNR-----GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||+++..     .++..||+|+.+....   ....+|..|..+....+|||++.      ..+...+++||+++|+|..+
T Consensus        29 Vy~a~~~~~~~~~~~~~vAvK~l~~~~~---~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~  105 (299)
T 4asz_A           29 VFLAECYNLCPEQDKILVAVKTLKDASD---NARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKF  105 (299)
T ss_dssp             EEEEEECSCC----CEEEEEEEECSCCH---HHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHH
T ss_pred             EEEEEECCcccCCCCEEEEEEEeCCCCh---HHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEcCCCCcHHHH
Confidence            6777654     3567788776543221   22346888989999999999884      33456799999999999998


Q ss_pred             hcc--------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccC
Q 044746           70 CKK--------------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH  135 (202)
Q Consensus        70 ~~~--------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~  135 (202)
                      +..              ..+++.++..++.|++.||.|||+   ++||||||||+|||++.++.+||+|||+|+......
T Consensus       106 l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~  182 (299)
T 4asz_A          106 LRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTD  182 (299)
T ss_dssp             HHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGG
T ss_pred             HHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCccCHhhEEECCCCcEEECCcccceecCCCC
Confidence            854              359999999999999999999999   999999999999999999999999999998665444


Q ss_pred             cccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhcc
Q 044746          136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEISE  189 (202)
Q Consensus       136 ~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~~  189 (202)
                      .........||+.|||||++.+..++.++|||||||++|||+| |++||.+..+.
T Consensus       183 ~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~  237 (299)
T 4asz_A          183 YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN  237 (299)
T ss_dssp             CEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH
T ss_pred             ceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH
Confidence            3333444568999999999999999999999999999999999 89999876543

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=3e-41  Score=270.59  Aligned_cols=182  Identities=16%  Similarity=0.251  Sum_probs=140.7

Q ss_pred             CCccccC-----CCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhh
Q 044746            1 MEKPRNR-----GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||+++.+     .++..||+|+.+....   ....+|..|..++...+|+|++.      ......++++|+++|+|..+
T Consensus        57 Vy~a~~~~~~~~~~~~~vAvK~l~~~~~---~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~  133 (329)
T 4aoj_A           57 VFLAECHNLLPEQDKMLVAVKALKEASE---SARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRF  133 (329)
T ss_dssp             EEEEEESSSCC---CEEEEEEEESCCSH---HHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHH
T ss_pred             EEEEEECCcccCCCCeEEEEEEECcCCH---HHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHHHH
Confidence            6777643     4567788776543222   22346888999999999999874      34456789999999999998


Q ss_pred             hcc----------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccc
Q 044746           70 CKK----------------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR  133 (202)
Q Consensus        70 ~~~----------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~  133 (202)
                      +..                ..+++.++..++.|++.||.|||+   ++||||||||+|||++.++.+||+|||+++....
T Consensus       134 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NILl~~~~~~Ki~DFGla~~~~~  210 (329)
T 4aoj_A          134 LRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYS  210 (329)
T ss_dssp             HHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEEEECCCC-------
T ss_pred             HHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecccccHhhEEECCCCcEEEcccccceeccC
Confidence            753                359999999999999999999999   9999999999999999999999999999987654


Q ss_pred             cCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          134 EHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       134 ~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ...........||+.|||||++.+..++.++|||||||++|||+| |+.||.....
T Consensus       211 ~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~  266 (329)
T 4aoj_A          211 TDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN  266 (329)
T ss_dssp             ---------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH
T ss_pred             CCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCH
Confidence            433333445678999999999999999999999999999999999 8999986554

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=8.3e-40  Score=259.80  Aligned_cols=181  Identities=19%  Similarity=0.217  Sum_probs=135.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc----------cceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED----------TETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------~~~~~~~~~~~~~l~~~~   70 (202)
                      |||++..  ++.||+|+.+......    ..+..|.......+|+|++...+          ..+++++|+++|+|..++
T Consensus        19 Vy~~~~~--g~~VAvK~l~~~~~~~----~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gsL~~~l   92 (303)
T 3hmm_A           19 VWRGKWR--GEEVAVKIFSSREERS----WFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYL   92 (303)
T ss_dssp             EEEEEET--TEEEEEEEECGGGHHH----HHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHH
T ss_pred             EEEEEEC--CEEEEEEEECccchhh----HHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCCCcHHHHH
Confidence            7888874  5667777654332211    11222333445678999874222          236899999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHhCC-----CCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc--ccCCC
Q 044746           71 KKNILGFGQLREIEVSTSKGIAYLHEEC-----RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI--TSTGR  143 (202)
Q Consensus        71 ~~~~~~~~~~~~~~~~i~~~l~~lH~~~-----~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~--~~~~~  143 (202)
                      +...++++.+..++.|++.||.|||+.+     ..+||||||||+|||++.++.+||+|||+|+.........  .....
T Consensus        93 ~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~  172 (303)
T 3hmm_A           93 NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHR  172 (303)
T ss_dssp             HHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC----
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCceeeecccc
Confidence            9999999999999999999999999721     1399999999999999999999999999998765433221  22345


Q ss_pred             CCCCcccCCcccCCC------CCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          144 RRTPGCEAPELWMPY------SVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~------~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      .||+.|||||++.+.      .++.++|||||||++|||+||.+||....
T Consensus       173 ~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~  222 (303)
T 3hmm_A          173 VGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHE  222 (303)
T ss_dssp             -CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCC
T ss_pred             cccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccc
Confidence            789999999999764      36789999999999999999998875443

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=3.8e-40  Score=266.31  Aligned_cols=183  Identities=21%  Similarity=0.278  Sum_probs=143.9

Q ss_pred             CCccccCCC-----cceeehhhhchhhhhccCCcccCCcHHHHHHhcc-cccccc---c----cccceEEEEEccCCchh
Q 044746            1 MEKPRNRGS-----TRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADN-FSNLVG---S----EDTETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~---~----~~~~~~~~~~~~~~~l~   67 (202)
                      ||+|+..+.     .+.||+|..+.....  .....|..|..++...+ |+|++.   .    ++...++++|+++|+|.
T Consensus        80 Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~--~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~~~iV~Ey~~~G~L~  157 (353)
T 4ase_A           80 VIEADAFGIDKTATCRTVAVKMLKEGATH--SEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLS  157 (353)
T ss_dssp             EEEEEEETSSSTTCEEEEEEEEECTTCCH--HHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEEECCTTEEHH
T ss_pred             EEEEEEcCCCcccCCeEEEEEEEccccCh--HHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCCEEEEEEEcCCCCCHH
Confidence            677765443     356776654332211  12345667776666654 477763   2    23456899999999999


Q ss_pred             hhhcc-----------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746           68 LLCKK-----------------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus        68 ~~~~~-----------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      .+++.                 ..+++.++..++.|++.||.|||+   ++||||||||+|||++.++.+||+|||+|+.
T Consensus       158 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~---~~iiHRDLK~~NILl~~~~~vKi~DFGlar~  234 (353)
T 4ase_A          158 TYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARD  234 (353)
T ss_dssp             HHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCGGGSC
T ss_pred             HHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhh---CCeecCccCccceeeCCCCCEEECcchhhhh
Confidence            98843                 348999999999999999999999   9999999999999999999999999999987


Q ss_pred             ccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          131 YNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       131 ~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ..............||+.|||||++.+..|+.++|||||||++|||+| |++||.+...
T Consensus       235 ~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~  293 (353)
T 4ase_A          235 IYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI  293 (353)
T ss_dssp             TTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC
T ss_pred             cccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCH
Confidence            655444444455678999999999999999999999999999999998 9999987543

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=1.6e-39  Score=257.55  Aligned_cols=179  Identities=16%  Similarity=0.195  Sum_probs=137.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc------------------cceEEEEEcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED------------------TETYIKGFLA   62 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------------~~~~~~~~~~   62 (202)
                      ||+|+++.+++.||.|+.+....  .....++..|..++...+|||++...+                  +.++++++++
T Consensus        21 V~~a~~~~~~~~vAiK~i~~~~~--~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE~~~   98 (299)
T 4g31_A           21 VFEAKNKVDDCNYAIKRIRLPNR--ELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCR   98 (299)
T ss_dssp             EEEEEETTTCCEEEEEEEEECSS--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC----------CEEEEEEEECCC
T ss_pred             EEEEEECCCCCEEEEEEEeccCC--HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccCCCcEEEEEEecCC
Confidence            79999999899888876433211  112235677888888999999985332                  2468899999


Q ss_pred             CCchhhhhccCC----CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc-
Q 044746           63 MGPFYLLCKKNI----LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-  137 (202)
Q Consensus        63 ~~~l~~~~~~~~----~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~-  137 (202)
                      +|+|..++....    .++..++.++.|++.||+|||+   ++|+||||||+|||++.++.+||+|||+|+........ 
T Consensus        99 gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~---~~IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~~~~~  175 (299)
T 4g31_A           99 KENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQ  175 (299)
T ss_dssp             SCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCCCCC----------
T ss_pred             CCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH---CcCccccCcHHHeEECCCCcEEEccCccceecCCCcccc
Confidence            999999886542    4566789999999999999999   99999999999999999999999999999876433211 


Q ss_pred             ---------cccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          138 ---------ITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       138 ---------~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                               ....+.+||+.|||||++.+..|+.++||||+||++|||++   ||....
T Consensus       176 ~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~  231 (299)
T 4g31_A          176 TVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM  231 (299)
T ss_dssp             ----------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH
T ss_pred             ccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc
Confidence                     11234579999999999999999999999999999999996   776543

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.4e-39  Score=264.65  Aligned_cols=184  Identities=19%  Similarity=0.270  Sum_probs=146.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc------------ccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE------------DTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------~~~~~~~~~~~~~~l~~   68 (202)
                      ||+|+++.+++.||.|+.+..... .....++..|..++...+|+|++...            +..++++++++ |+|..
T Consensus        70 V~~a~~~~t~~~vAiK~i~~~~~~-~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~~ivmE~~~-g~L~~  147 (398)
T 4b99_A           70 VSSARRRLTGQQVAIKKIPNAFDV-VTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLME-SDLHQ  147 (398)
T ss_dssp             EEEEEETTTCCEEEEEEETTTTSS-HHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCEEEEEECCS-EEHHH
T ss_pred             EEEEEECCCCCEEEEEEECccccc-hHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCEEEEEEeCCC-CCHHH
Confidence            799999999999998875432211 12234566788888899999987532            34578899996 56766


Q ss_pred             hh-ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccC--cccccCCCCC
Q 044746           69 LC-KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH--THITSTGRRR  145 (202)
Q Consensus        69 ~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~--~~~~~~~~~g  145 (202)
                      ++ ..+.+++.+++.++.|++.||.|||+   ++||||||||+|||++.++.+|++|||+|+.+....  ........+|
T Consensus       148 ~i~~~~~l~~~~~~~~~~qil~al~ylH~---~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~G  224 (398)
T 4b99_A          148 IIHSSQPLTLEHVRYFLYQLLRGLKYMHS---AQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVA  224 (398)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCC
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHH---CcCcCCCcCccccccCCCCCEEEeecceeeecccCcccccccccccee
Confidence            66 45679999999999999999999999   999999999999999999999999999998654321  1222345689


Q ss_pred             CCcccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          146 TPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       146 t~~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |+.|+|||++.+. .++.++||||+||++|||++|++||.+.+..
T Consensus       225 T~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~  269 (398)
T 4b99_A          225 TRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYV  269 (398)
T ss_dssp             CCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHH
T ss_pred             ChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHH
Confidence            9999999998875 5689999999999999999999999876543

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=7.1e-39  Score=274.97  Aligned_cols=182  Identities=17%  Similarity=0.270  Sum_probs=147.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHH---HHHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQ---RMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||+|+++.+++.+|.|+..+..............|.   .+....+||+++.      ..+..+++++++++|+|..++.
T Consensus       205 V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~lylVmEy~~GGdL~~~l~  284 (689)
T 3v5w_A          205 VYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLS  284 (689)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH
T ss_pred             EEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEEEEEecCCCCcHHHHHH
Confidence            799999999999999886554333322222233332   2334568898874      4456678999999999998885


Q ss_pred             c-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           72 K-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        72 ~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      . +.+++..++.++.||+.||+|||+   ++||||||||+|||++.+|.+||+|||+|+......    ....+||+.||
T Consensus       285 ~~~~l~E~~a~~y~~qIl~aL~yLH~---~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~----~~t~~GTp~Ym  357 (689)
T 3v5w_A          285 QHGVFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASVGTHGYM  357 (689)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCC----CCSCCSCGGGC
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCchHHeEEeCCCCEEecccceeeecCCCC----CCCccCCcCcc
Confidence            4 579999999999999999999999   999999999999999999999999999998765432    24468999999


Q ss_pred             CCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          151 APELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       151 aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |||++.. ..|+.++|+||+||++|||++|++||.+....
T Consensus       358 APEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~  397 (689)
T 3v5w_A          358 APEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK  397 (689)
T ss_dssp             CHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCC
T ss_pred             CHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH
Confidence            9999974 57999999999999999999999999875543

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=8.9e-38  Score=253.47  Aligned_cols=178  Identities=23%  Similarity=0.333  Sum_probs=136.7

Q ss_pred             CCccccC---CCcceeehhhhchhhhhccCCcccCCcHHHHHHh-cccccccc------ccccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNR---GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAA-DNFSNLVG------SEDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||+|+++   ..++.||.|.....     ....++..|...+.. .+|+|++.      ..+..+++++++++|+|..++
T Consensus        37 Vy~a~~~~~~~~~~~vAiK~i~~~-----~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~lvmE~~~g~~L~~~~  111 (361)
T 4f9c_A           37 VYLATAQLQVGPEEKIALKHLIPT-----SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDIL  111 (361)
T ss_dssp             EEEEEEEBTTSCEEEEEEEEECTT-----SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEEEEECCCCCCHHHHH
T ss_pred             EEEEEEcccCCCCCEEEEEEEccc-----cCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEEEEEeCCCcccHHHHH
Confidence            6888753   45677777753222     122334455554444 47898874      345567889999999999988


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC-CceEEeeeecceeccccCcc------------
Q 044746           71 KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN-FFPKAADFGLAKLYNREHTH------------  137 (202)
Q Consensus        71 ~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~-~~~kl~dfgl~~~~~~~~~~------------  137 (202)
                      +  .+++.+++.++.|++.||+|||+   ++|+||||||+|||++.+ +.+||+|||+|+........            
T Consensus       112 ~--~l~~~~~~~~~~qll~al~ylH~---~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~  186 (361)
T 4f9c_A          112 N--SLSFQEVREYMLNLFKALKRIHQ---FGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQE  186 (361)
T ss_dssp             T--TCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC-------
T ss_pred             c--CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCcccccccccccccccc
Confidence            4  59999999999999999999999   999999999999999876 79999999999865332110            


Q ss_pred             --------------cccCCCCCCCcccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          138 --------------ITSTGRRRTPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       138 --------------~~~~~~~gt~~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                                    ......+||+.|+|||++.+. .++.++||||+||++|||++|++||....+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~~  252 (361)
T 4f9c_A          187 RCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASD  252 (361)
T ss_dssp             -------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCSS
T ss_pred             ccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCCC
Confidence                          112345799999999999875 489999999999999999999999965443

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=1.1e-36  Score=260.32  Aligned_cols=180  Identities=18%  Similarity=0.257  Sum_probs=149.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc--c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK--K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~--~   72 (202)
                      ||+++++.+++.||.|+........   ...+..|..++...+|+|++.      ..+..+++++++++|+|..++.  .
T Consensus       173 V~~~~~~~tg~~~AiK~i~~~~~~~---~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~~gg~L~~~i~~~~  249 (573)
T 3uto_A          173 VHRVTERATGNNFAAKFVMTPHESD---KETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEH  249 (573)
T ss_dssp             EEEEEETTTCCEEEEEEEECCSHHH---HHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECCCCCBHHHHHTCTT
T ss_pred             EEEEEECCCCCEEEEEEEeccchhh---HHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHHHhC
Confidence            6899999999999887654332221   234566778888899999874      4555678999999999998874  3


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC--CceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN--FFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~--~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      +.+++.+++.++.||+.||.|||+   ++|+||||||+|||++.+  +.+||+|||+|+.+......   ...+||+.||
T Consensus       250 ~~l~e~~~~~~~~qi~~al~ylH~---~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~---~~~~GT~~y~  323 (573)
T 3uto_A          250 NKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV---KVTTGTAEFA  323 (573)
T ss_dssp             SCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEE---EEECSSGGGC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCChhhccccCCCCCCEEEeeccceeEccCCCce---eeeEECcccc
Confidence            569999999999999999999999   999999999999999854  89999999999976543322   2346899999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |||++.+..|+.++||||+||++|||++|++||.+....
T Consensus       324 APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~  362 (573)
T 3uto_A          324 APEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDD  362 (573)
T ss_dssp             CHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH
T ss_pred             CHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH
Confidence            999999999999999999999999999999999876543

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=7.3e-36  Score=246.06  Aligned_cols=185  Identities=18%  Similarity=0.251  Sum_probs=156.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++++..+++.+|.|+.+............+..|..+....+|++++.      .....+++++++++|+|..++....
T Consensus        85 V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~  164 (410)
T 3v8s_A           85 VQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYD  164 (410)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHCC
T ss_pred             EEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHcCC
Confidence            7899999999999998876655555555556777888888889998874      4455678999999999999998889


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+++........ ......||+.|+|||+
T Consensus       165 ~~e~~~~~~~~qi~~aL~~LH~---~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~-~~~~~~gt~~Y~APE~  240 (410)
T 3v8s_A          165 VPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMV-RCDTAVGTPDYISPEV  240 (410)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEE-ECCSCCSCGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeeECCCCCEEEeccceeEeeccCCcc-cccCCcCCccccCHHH
Confidence            9999999999999999999999   99999999999999999999999999999876543221 2234678999999999


Q ss_pred             cCCCC----CCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          155 WMPYS----VTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       155 ~~~~~----~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      +.+..    ++.++|+||+||++|||++|++||......
T Consensus       241 l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~  279 (410)
T 3v8s_A          241 LKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLV  279 (410)
T ss_dssp             HHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHH
T ss_pred             hhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChh
Confidence            97655    788999999999999999999999865543

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=1.6e-35  Score=245.75  Aligned_cols=184  Identities=18%  Similarity=0.248  Sum_probs=154.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..+++.+|.|+.+............+..|..+....+|++++.      ..+...++++++++|+|..++..  
T Consensus        90 V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lV~Ey~~gg~L~~~l~~~~  169 (437)
T 4aw2_A           90 VAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFE  169 (437)
T ss_dssp             EEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTTT
T ss_pred             EEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCEEEEEEecCCCCcHHHHHHHcc
Confidence            7899999999999988876655444444555777877888889998763      44556789999999999999865  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+++........ ......||+.|+||
T Consensus       170 ~~l~e~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~~~-~~~~~~GT~~Y~AP  245 (437)
T 4aw2_A          170 DRLPEEMARFYLAEMVIAIDSVHQ---LHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTV-QSSVAVGTPDYISP  245 (437)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCE-ECCSCCSCGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCeEecccCHHHeeEcCCCCEEEcchhhhhhcccCCCc-ccccccCCcCeeCh
Confidence            579999999999999999999999   99999999999999999999999999999865443222 23345789999999


Q ss_pred             cccC-----CCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWM-----PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~-----~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.     ...++.++|+||+||++|||++|++||.....
T Consensus       246 E~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~  286 (437)
T 4aw2_A          246 EILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESL  286 (437)
T ss_dssp             HHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSH
T ss_pred             HHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCCh
Confidence            9986     45789999999999999999999999986554

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=1.1e-34  Score=237.95  Aligned_cols=181  Identities=22%  Similarity=0.270  Sum_probs=145.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHh-cccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAA-DNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.+|.|+.+............+..|..+... .+|++++.      ..+...++++++++|+|..++.. 
T Consensus        68 V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~  147 (396)
T 4dc2_A           68 VLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ  147 (396)
T ss_dssp             EEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH
T ss_pred             EEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEEEEcCCCCcHHHHHHHc
Confidence            78999999999999888665443333334445555554443 47888764      34556789999999999887754 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      +.+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+++......  ......+||+.|+||
T Consensus       148 ~~l~~~~~~~~~~qi~~aL~~LH~---~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~--~~~~~~~gt~~Y~aP  222 (396)
T 4dc2_A          148 RKLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG--DTTSTFCGTPNYIAP  222 (396)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT--CCBCCCCBCGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCEEeccCCHHHEEECCCCCEEEeecceeeecccCC--CccccccCCcccCCc
Confidence            579999999999999999999999   999999999999999999999999999998532221  123456789999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      |++.+..++.++|+||+||++|||++|++||...
T Consensus       223 E~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~  256 (396)
T 4dc2_A          223 EILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV  256 (396)
T ss_dssp             HHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTT
T ss_pred             hhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccc
Confidence            9999999999999999999999999999999643

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=9.2e-35  Score=233.94  Aligned_cols=183  Identities=19%  Similarity=0.279  Sum_probs=151.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.+|.|+.+............+..|..+....+|++++.      ..+...++++++++|+|..++.. +
T Consensus        21 V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~  100 (337)
T 1o6l_A           21 VILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRER  100 (337)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHS
T ss_pred             EEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHhcC
Confidence            6889999889999988876554434444455667777778888998763      34456789999999999887754 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   ++|+||||||+||+++.++.+||+|||+++......  .......||+.|+|||
T Consensus       101 ~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE  175 (337)
T 1o6l_A          101 VFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG--ATMKTFCGTPEYLAPE  175 (337)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT--CCBCCCEECGGGCCGG
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCeecCcCCHHHEEECCCCCEEEeeccchhhcccCC--CcccccccChhhCChh
Confidence            69999999999999999999999   999999999999999999999999999998532221  1234457899999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..++.++|+||+||++|||++|++||.....
T Consensus       176 ~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~  210 (337)
T 1o6l_A          176 VLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH  210 (337)
T ss_dssp             GGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             hhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCH
Confidence            99998999999999999999999999999976543

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=6.9e-35  Score=240.40  Aligned_cols=185  Identities=18%  Similarity=0.229  Sum_probs=152.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..+++.||.|+.+............+..|..+....+|++++.      .....+++++++++|+|..++..  
T Consensus        77 V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lVmE~~~gg~L~~~l~~~~  156 (412)
T 2vd5_A           77 VAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFG  156 (412)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHS
T ss_pred             EEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEcCCCCCcHHHHHHhcC
Confidence            6889998888999988866544333344455667777777888888763      34556789999999999998865  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..++.++.|++.||+|||+   ++|+||||||+|||++.++.+||+|||+++........ ......||+.|+||
T Consensus       157 ~~l~~~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~~~-~~~~~~Gt~~Y~AP  232 (412)
T 2vd5_A          157 ERIPAEMARFYLAEIVMAIDSVHR---LGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTV-RSLVAVGTPDYLSP  232 (412)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCE-ECSSCCSCGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccCHHHeeecCCCCEEEeechhheeccCCCcc-ccceeccccCcCCH
Confidence            479999999999999999999999   99999999999999999999999999999876443221 22345789999999


Q ss_pred             cccC-------CCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          153 ELWM-------PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       153 e~~~-------~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |++.       ...++.++|+||+||++|||++|++||......
T Consensus       233 E~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~  276 (412)
T 2vd5_A          233 EILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTA  276 (412)
T ss_dssp             HHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHH
T ss_pred             HHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHH
Confidence            9987       356899999999999999999999999876543

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=1.5e-34  Score=233.31  Aligned_cols=183  Identities=19%  Similarity=0.246  Sum_probs=147.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHh-cccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAA-DNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.||.|+.+............+..|..+... .+|++++.      .....+++++++++|+|..++.. 
T Consensus        33 V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~  112 (345)
T 1xjd_A           33 VFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC  112 (345)
T ss_dssp             EEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH
T ss_pred             EEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc
Confidence            78999998899999887665443333333344445444443 47887763      34556789999999999888864 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      +.+++..+..++.|++.||.|||+   ++|+||||||+||+++.++.+||+|||+++......  .......||+.|+||
T Consensus       113 ~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~--~~~~~~~gt~~y~aP  187 (345)
T 1xjd_A          113 HKFDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGD--AKTNTFCGTPDYIAP  187 (345)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT--CCBCCCCSCGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCChhhEEECCCCCEEEeEChhhhhcccCC--CcccCCCCCcccCCh
Confidence            679999999999999999999999   999999999999999999999999999997532221  123446789999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.+..++.++|+||+||++|||++|++||.....
T Consensus       188 E~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~  223 (345)
T 1xjd_A          188 EILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE  223 (345)
T ss_dssp             HHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             hhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCH
Confidence            999998999999999999999999999999986554

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=3.2e-35  Score=237.96  Aligned_cols=184  Identities=21%  Similarity=0.270  Sum_probs=144.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.+|.|+.+............+..|..+.... +|++++.      ..+..+++++++++|+|..++.. 
T Consensus        39 V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~  118 (353)
T 3txo_A           39 VMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKS  118 (353)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH
T ss_pred             EEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc
Confidence            789999988999998876654333333334444555555443 7887763      34556789999999999888754 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..++.++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+++......  ......+||+.|+||
T Consensus       119 ~~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~--~~~~~~~gt~~y~aP  193 (353)
T 3txo_A          119 RRFDEARARFYAAEIISALMFLHD---KGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNG--VTTATFCGTPDYIAP  193 (353)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC-----------CCGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCCcccCCCHHHEEECCCCCEEEccccceeecccCC--ccccccCCCcCeECh
Confidence            579999999999999999999999   999999999999999999999999999997532221  123345789999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |++.+..++.++|+||+||++|||++|++||......
T Consensus       194 E~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~  230 (353)
T 3txo_A          194 EILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENED  230 (353)
T ss_dssp             HHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             hhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHH
Confidence            9998888999999999999999999999999876543

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=2e-34  Score=230.22  Aligned_cols=180  Identities=21%  Similarity=0.303  Sum_probs=150.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.+|.|+.+............+..|..+....+|++++.      ......++++++++++|..++.. .
T Consensus        22 V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~  101 (318)
T 1fot_A           22 VHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQ  101 (318)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHTS
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEEeCCCCCCHHHHHHHcC
Confidence            6889999889999988866554444444455666777778888998764      34456688999999999988864 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   ++|+||||||+||+++.++.+||+|||+++.....     .....||+.|+|||
T Consensus       102 ~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE  173 (318)
T 1fot_A          102 RFPNPVAKFYAAEVCLALEYLHS---KDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV-----TYTLCGTPDYIAPE  173 (318)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC-----BCCCCSCTTTCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChheEEEcCCCCEEEeecCcceecCCc-----cccccCCccccCHh
Confidence            69999999999999999999999   99999999999999999999999999999865432     23456899999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..++.++|+||+||++|||++|++||.....
T Consensus       174 ~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~  208 (318)
T 1fot_A          174 VVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT  208 (318)
T ss_dssp             HHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH
T ss_pred             HhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH
Confidence            99999999999999999999999999999976543

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=1.4e-34  Score=234.16  Aligned_cols=183  Identities=20%  Similarity=0.251  Sum_probs=148.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.+|.|+.+............+..|..+.... +|++++.      ..+..+++++++++|+|..++.. 
T Consensus        36 V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~  115 (353)
T 2i0e_A           36 VMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV  115 (353)
T ss_dssp             EEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH
T ss_pred             EEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHhc
Confidence            688999998999998887655443333344455555555443 6776653      34556789999999999888764 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      +.+++..+..++.|++.||.|||+   ++|+||||||+||+++.++.+||+|||+++......  .......||+.|+||
T Consensus       116 ~~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~--~~~~~~~gt~~y~aP  190 (353)
T 2i0e_A          116 GRFKEPHAVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDG--VTTKTFCGTPDYIAP  190 (353)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT--CCBCCCCSCGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCEEeccCCHHHEEEcCCCcEEEEeCCcccccccCC--cccccccCCccccCh
Confidence            679999999999999999999999   999999999999999999999999999998532221  123446789999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.+..++.++|+||+||++|||++|++||.....
T Consensus       191 E~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~  226 (353)
T 2i0e_A          191 EIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE  226 (353)
T ss_dssp             HHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             hhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCH
Confidence            999999999999999999999999999999986554

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=4.8e-34  Score=225.72  Aligned_cols=180  Identities=18%  Similarity=0.246  Sum_probs=151.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++++..+++.||.|+.....   ......+..|.......+|++++.      .++..+++++++++++|..++....
T Consensus        36 V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~  112 (297)
T 3fxz_A           36 VYTAMDVATGQEVAIRQMNLQQ---QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETC  112 (297)
T ss_dssp             EEEEEBTTTCCEEEEEEEEGGG---CSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHSC
T ss_pred             EEEEEECCCCcEEEEEEeeccc---ccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEECCCCCCHHHHHhhcC
Confidence            6899998888888887654322   222344667777788889998874      3445678999999999999999889


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++.++..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||++........  ......||+.|+|||+
T Consensus       113 ~~~~~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~  187 (297)
T 3fxz_A          113 MDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEV  187 (297)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC--CBCCCCSCGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEECCCCCEEEeeCCCceecCCccc--ccCCccCCcCccChhh
Confidence            9999999999999999999999   9999999999999999999999999999986554332  2234568999999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +.+..++.++||||+|+++|||++|+.||....+
T Consensus       188 ~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~  221 (297)
T 3fxz_A          188 VTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP  221 (297)
T ss_dssp             HHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred             hcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            9999999999999999999999999999976543

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=3e-34  Score=232.06  Aligned_cols=180  Identities=19%  Similarity=0.294  Sum_probs=152.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.+|.|+..............+..|..+....+|++++.      .....+++++++++++|..++.. +
T Consensus        57 V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~  136 (350)
T 1rdq_E           57 VMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG  136 (350)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHC
T ss_pred             EEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHHHcC
Confidence            6889998888899988866554444444555667777778889998764      34556789999999999888864 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   ++|+||||||+||+++.++.+||+|||+++.....     .....||+.|+|||
T Consensus       137 ~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~-----~~~~~gt~~y~aPE  208 (350)
T 1rdq_E          137 RFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR-----TWTLCGTPEALAPE  208 (350)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC-----BCCCEECGGGCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCcccccCccceEEECCCCCEEEcccccceeccCC-----cccccCCccccCHH
Confidence            79999999999999999999999   99999999999999999999999999999865432     23456899999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..++.++|+||+||++|||++|++||.....
T Consensus       209 ~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~  243 (350)
T 1rdq_E          209 IILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP  243 (350)
T ss_dssp             HHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             HhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCH
Confidence            99998999999999999999999999999986543

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=4.2e-34  Score=231.94  Aligned_cols=179  Identities=13%  Similarity=0.142  Sum_probs=138.5

Q ss_pred             CCcc-----ccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc---ccccccc------ccccceEEEEEccCCch
Q 044746            1 MEKP-----RNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD---NFSNLVG------SEDTETYIKGFLAMGPF   66 (202)
Q Consensus         1 v~k~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~------~~~~~~~~~~~~~~~~l   66 (202)
                      ||++     ++...++.||.|+.+...      ...+..+.......   .|++++.      ..+...++++++++|+|
T Consensus        81 Vy~~~~~~~~~~~~~~~vavK~~~~~~------~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~~~lv~e~~~~g~L  154 (365)
T 3e7e_A           81 VYEATQGDLNDAKNKQKFVLKVQKPAN------PWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTL  154 (365)
T ss_dssp             EEEEEC-------CCCCEEEEEESSCC------HHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSCEEEEECCCCSCBH
T ss_pred             EEEEEecCCcccccCcEEEEEEeCCCC------hhHHHHHHHHHHHhhhhhhhhhhhhheeeecCCCcEEEEeccCCCcH
Confidence            6777     466777788887754322      12233333333333   3566553      34556789999999999


Q ss_pred             hhhhc------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC-----------CCceEEeeeecce
Q 044746           67 YLLCK------KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE-----------NFFPKAADFGLAK  129 (202)
Q Consensus        67 ~~~~~------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~-----------~~~~kl~dfgl~~  129 (202)
                      ..++.      ...+++..+..++.|++.||.|||+   .+|+||||||+|||++.           ++.+||+|||+++
T Consensus       155 ~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~---~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~  231 (365)
T 3e7e_A          155 LNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHD---CEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSI  231 (365)
T ss_dssp             HHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECGGGTCC------CTTEEECCCTTCE
T ss_pred             HHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhh---CCeecCCCCHHHEEecccccCccccccccCCEEEeeCchhh
Confidence            99885      4569999999999999999999999   99999999999999988           8999999999998


Q ss_pred             eccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          130 LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       130 ~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ...............||+.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus       232 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~  290 (365)
T 3e7e_A          232 DMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEG  290 (365)
T ss_dssp             EGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEET
T ss_pred             hhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCC
Confidence            65433333344556789999999999999999999999999999999999999976544

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=4.4e-34  Score=232.91  Aligned_cols=183  Identities=20%  Similarity=0.282  Sum_probs=142.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHH-HHhcccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRM-IAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.+|.|+.+............+..|... ....+|++++.      ..+..+++++++++|+|..++.. 
T Consensus        54 V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~  133 (373)
T 2r5t_A           54 VLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRE  133 (373)
T ss_dssp             EEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH
T ss_pred             EEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEEEeCCCCCcHHHHHHhc
Confidence            68999999999999888655443332333333333333 45567887763      34556789999999999888754 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      +.+++..++.++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++......  .......||+.|+||
T Consensus       134 ~~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~--~~~~~~~gt~~y~aP  208 (373)
T 2r5t_A          134 RCFLEPRARFYAAEIASALGYLHS---LNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHN--STTSTFCGTPEYLAP  208 (373)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCC--CCCCSBSCCCCCCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEECCCCCEEEeeCccccccccCC--CccccccCCccccCH
Confidence            569999999999999999999999   999999999999999999999999999997532221  123445789999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.+..++.++|+||+||++|||++|++||.....
T Consensus       209 E~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~  244 (373)
T 2r5t_A          209 EVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT  244 (373)
T ss_dssp             HHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBH
T ss_pred             HHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH
Confidence            999999999999999999999999999999976544

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=231.49  Aligned_cols=181  Identities=19%  Similarity=0.272  Sum_probs=151.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++++..+++.+|.|+..............+..|..+....+|++++.      ..+..+++++++.+|+|..++... 
T Consensus        31 V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~  110 (384)
T 4fr4_A           31 VCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNV  110 (384)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHTTC
T ss_pred             EEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCCCcHHHHHHhcC
Confidence            6889999999999988765554444445556777888888889998874      334556889999999998888654 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+++.......   .....||+.|+|||
T Consensus       111 ~l~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~---~~~~~gt~~Y~aPE  184 (384)
T 4fr4_A          111 HFKEETVKLFICELVMALDYLQN---QRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQ---ITTMAGTKPYMAPE  184 (384)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTCC---BCCCCSCGGGCCGG
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCceeccCcHHHeEECCCCCEEEeccceeeeccCCCc---eeccCCCccccCCe
Confidence            69999999999999999999999   9999999999999999999999999999987643322   34467899999999


Q ss_pred             ccCC---CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMP---YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~---~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ++..   ..++.++|+||+||++|||++|+.||....
T Consensus       185 ~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~  221 (384)
T 4fr4_A          185 MFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRS  221 (384)
T ss_dssp             GTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCT
T ss_pred             eeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCC
Confidence            9874   458899999999999999999999997544

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=1e-33  Score=246.11  Aligned_cols=184  Identities=20%  Similarity=0.250  Sum_probs=149.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHh-ccccccc------cccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAA-DNFSNLV------GSEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i------~~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.||.|+.+............+..|..+... .+|++++      ...+..+++++++++|+|..++.. 
T Consensus       357 V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~  436 (674)
T 3pfq_A          357 VMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV  436 (674)
T ss_dssp             EEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEEEEECCCSCBHHHHHHHH
T ss_pred             EEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEEEEeCcCCCcHHHHHHhc
Confidence            78999999999999888765443333344444555554444 3566654      234456789999999999888865 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      +.+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+++.......  ......||+.|+||
T Consensus       437 ~~~~~~~~~~~~~qi~~aL~~LH~---~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~--~~~~~~GT~~Y~AP  511 (674)
T 3pfq_A          437 GRFKEPHAVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGV--TTKTFCGTPDYIAP  511 (674)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHH---TSEECCCCCSTTEEECSSSCEEECCCTTCEECCCTTC--CBCCCCSCSSSCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCeEeccCChhhEEEcCCCcEEEeecceeeccccCCc--ccccccCCCcccCH
Confidence            679999999999999999999999   9999999999999999999999999999985432221  23456789999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |++.+..++.++|+||+|+++|||++|++||.+....
T Consensus       512 E~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~  548 (674)
T 3pfq_A          512 EIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED  548 (674)
T ss_dssp             HHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             hhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHH
Confidence            9999999999999999999999999999999876543

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=5.6e-34  Score=230.01  Aligned_cols=180  Identities=22%  Similarity=0.275  Sum_probs=144.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.+|.|+.+............+..|..+.... +|++++.      .....+++++++++|+|..++.. 
T Consensus        25 V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~  104 (345)
T 3a8x_A           25 VLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ  104 (345)
T ss_dssp             EEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH
T ss_pred             EEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc
Confidence            688999888888888876544322222233344555555443 7888763      34456788999999999887754 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+++......  .......||+.|+||
T Consensus       105 ~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~--~~~~~~~gt~~y~aP  179 (345)
T 3a8x_A          105 RKLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG--DTTSTFCGTPNYIAP  179 (345)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTT--CCBCCCCSCGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEECCCCCEEEEeccccccccCCC--CcccccCCCccccCc
Confidence            579999999999999999999999   999999999999999999999999999998532221  123445789999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      |++.+..++.++|+||+||++|||++|++||..
T Consensus       180 E~~~~~~~~~~~DiwslG~il~ell~g~~pf~~  212 (345)
T 3a8x_A          180 EILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  212 (345)
T ss_dssp             HHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             cccCCCCCChHHhHHHHHHHHHHHHhCCCCcCC
Confidence            999998999999999999999999999999975

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=1.9e-33  Score=238.55  Aligned_cols=182  Identities=19%  Similarity=0.222  Sum_probs=151.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..+++.+|.|+..............+..|..+....+|++++.      .....+++++++++|+|..++..  
T Consensus       201 Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmE~~~gg~L~~~l~~~~  280 (543)
T 3c4z_A          201 VFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVD  280 (543)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTSS
T ss_pred             EEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEEEeccCCCHHHHHHHhh
Confidence            7889998888888888765554444444455677777888889998763      34456789999999999887753  


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           73 ---NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        73 ---~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                         ..+++..+..++.|++.||.|||+   ++|+||||||+||+++.++.+||+|||+++........  .....||+.|
T Consensus       281 ~~~~~l~e~~~~~~~~qi~~aL~~LH~---~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~~--~~~~~GT~~Y  355 (543)
T 3c4z_A          281 EDNPGFQEPRAIFYTAQIVSGLEHLHQ---RNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTK--TKGYAGTPGF  355 (543)
T ss_dssp             TTSCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCC--BCCCCSCTTT
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHH---cCCcccCCChHHEEEeCCCCEEEeecceeeeccCCCcc--cccccCCccc
Confidence               359999999999999999999999   99999999999999999999999999999875433221  2345789999


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +|||++.+..++.++|+||+||++|||++|++||....
T Consensus       356 ~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~  393 (543)
T 3c4z_A          356 MAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARG  393 (543)
T ss_dssp             SCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTT
T ss_pred             cChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCc
Confidence            99999999999999999999999999999999998754

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=4e-34  Score=225.83  Aligned_cols=184  Identities=18%  Similarity=0.197  Sum_probs=144.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++...+..||.|+.........+...++..|.......+|++++.      ..+..+++++++++++|..++.. .
T Consensus        27 V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~  106 (294)
T 4eqm_A           27 VYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHG  106 (294)
T ss_dssp             EEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHC
T ss_pred             EEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEEeCCCCCCHHHHHHhcC
Confidence            6889988888888887653332222233345677777778888998763      34455688999999999988754 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++........ ......||+.|+|||
T Consensus       107 ~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~~gt~~y~aPE  182 (294)
T 4eqm_A          107 PLSVDTAINFTNQILDGIKHAHD---MRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLT-QTNHVLGTVQYFSPE  182 (294)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCSSSTTC--------------CCSSCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEEeCCCcccccccccc-ccCccccCccccCHh
Confidence            69999999999999999999999   99999999999999999999999999999865432221 123356899999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .+.+..++.++|+||+|+++|+|++|+.||.....
T Consensus       183 ~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~  217 (294)
T 4eqm_A          183 QAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETA  217 (294)
T ss_dssp             HHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCH
T ss_pred             HhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCh
Confidence            99998999999999999999999999999986553

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=1.2e-33  Score=226.04  Aligned_cols=183  Identities=22%  Similarity=0.256  Sum_probs=147.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++++..+++.||.|+......  ......+..|..+....+|++++.      .++...++++++++++|..++... 
T Consensus        23 V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  100 (323)
T 3tki_A           23 VQLAVNRVTEEAVAVKIVDMKRA--VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI  100 (323)
T ss_dssp             EEEEEETTTCCEEEEEEEECC---------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGSBTTT
T ss_pred             EEEEEECCCCcEEEEEEEEcccc--cchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEcCCCCcHHHHHhhcC
Confidence            68899988888888887543322  122345667777788888998774      345557899999999999888755 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.++..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++...............||+.|+|||
T Consensus       101 ~~~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE  177 (323)
T 3tki_A          101 GMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPE  177 (323)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccCcH
Confidence            59999999999999999999999   999999999999999999999999999998664433333334567899999999


Q ss_pred             ccCCCCC-CchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSV-TQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~-~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..+ +.++||||+||++++|++|+.||.....
T Consensus       178 ~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~  213 (323)
T 3tki_A          178 LLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSD  213 (323)
T ss_dssp             HHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCT
T ss_pred             HhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCch
Confidence            9987765 6789999999999999999999976544

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=9e-34  Score=231.81  Aligned_cols=185  Identities=19%  Similarity=0.229  Sum_probs=140.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcc-cccccc--------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADN-FSNLVG--------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~--------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++++..+++.||.|......... ....++..|........ |++++.        .+...++++++++ ++|..++.
T Consensus        25 V~~~~~~~~~~~vaiK~i~~~~~~~-~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~lv~e~~~-~~L~~~~~  102 (388)
T 3oz6_A           25 VWKSIDRRTGEVVAVKKIFDAFQNS-TDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYLVFDYME-TDLHAVIR  102 (388)
T ss_dssp             EEEEEETTTCCEEEEEEECC--CCH-HHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEEEEECCS-EEHHHHHH
T ss_pred             EEEEEECCCCCEEEEEEecccccCh-HHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEEEecccC-cCHHHHHH
Confidence            6889988888888877543221111 11223444555555554 888763        1224568888887 68888888


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccC----------------
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH----------------  135 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~----------------  135 (202)
                      ...+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+++......                
T Consensus       103 ~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~  179 (388)
T 3oz6_A          103 ANILEPVHKQYVVYQLIKVIKYLHS---GGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTEN  179 (388)
T ss_dssp             HTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC-----
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHeEEcCCCCEEecCCcccccccccccccccccccccccccc
Confidence            8899999999999999999999999   999999999999999999999999999998653211                


Q ss_pred             ---cccccCCCCCCCcccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          136 ---THITSTGRRRTPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       136 ---~~~~~~~~~gt~~y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                         .........||+.|+|||++.+ ..++.++||||+||+++||++|++||.+....+
T Consensus       180 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~  238 (388)
T 3oz6_A          180 FDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMN  238 (388)
T ss_dssp             ----------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             cccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence               0111234578999999999886 578999999999999999999999998765443

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=4.8e-34  Score=228.06  Aligned_cols=181  Identities=24%  Similarity=0.322  Sum_probs=141.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc----------ccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE----------DTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----------~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++++.  ++.||.|+.+......    ..+..|.......+|+|++...          ....++++++++|+|..++
T Consensus        40 Vy~~~~~--~~~vavK~~~~~~~~~----~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l  113 (322)
T 3soc_A           40 VWKAQLL--NEYVAVKIFPIQDKQS----WQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFL  113 (322)
T ss_dssp             EEEEEET--TEEEEEEEECGGGHHH----HHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHH
T ss_pred             EEEEEEC--CCEEEEEEeecCchHH----HHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEecCCCCCHHHHH
Confidence            6778765  4667766643322211    1222344455667788876421          1236889999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHhCCCC----------CeEEecCCCCcEEEcCCCceEEeeeecceeccccCccccc
Q 044746           71 KKNILGFGQLREIEVSTSKGIAYLHEECRQ----------KIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITS  140 (202)
Q Consensus        71 ~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~----------~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~  140 (202)
                      ....+++..+..++.|++.||.|||+   .          +++||||||+||+++.++.+||+|||+++...........
T Consensus       114 ~~~~~~~~~~~~i~~qi~~al~~LH~---~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~  190 (322)
T 3soc_A          114 KANVVSWNELCHIAETMARGLAYLHE---DIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDT  190 (322)
T ss_dssp             HHCCBCHHHHHHHHHHHHHHHHHHTC---CEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCC
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHh---hccccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccccccccCcccc
Confidence            98999999999999999999999998   7          9999999999999999999999999999876554443334


Q ss_pred             CCCCCCCcccCCcccCCC-----CCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          141 TGRRRTPGCEAPELWMPY-----SVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       141 ~~~~gt~~y~aPe~~~~~-----~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      ....||+.|+|||++.+.     .++.++|||||||++|||++|+.||.+..+..
T Consensus       191 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~  245 (322)
T 3soc_A          191 HGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEY  245 (322)
T ss_dssp             TTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCC
T ss_pred             ccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchh
Confidence            456789999999999863     45567899999999999999999998765543

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=4.7e-33  Score=222.36  Aligned_cols=179  Identities=20%  Similarity=0.248  Sum_probs=149.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++++..+++.||.|+.....   ......+..|.......+|++++.      .++...++++++++++|..++....
T Consensus        61 V~~a~~~~~g~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  137 (321)
T 2c30_A           61 VCLAREKHSGRQVAVKMMDLRK---QQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVR  137 (321)
T ss_dssp             EEEEEETTTCCEEEEEEEETTT---CCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTCC
T ss_pred             EEEEEECCCCcEEEEEEEeccc---hhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHHhcC
Confidence            6889988888888888754321   222344667777778888998764      3445668899999999999998889


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||++.........  .....||+.|+|||+
T Consensus       138 l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~gt~~y~aPE~  212 (321)
T 2c30_A          138 LNEEQIATVCEAVLQALAYLHA---QGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPK--RKSLVGTPYWMAPEV  212 (321)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC--BCCCCSCGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCcEEEeeeeeeeecccCccc--cccccCCccccCHhh
Confidence            9999999999999999999999   99999999999999999999999999999876543221  234568999999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +.+..++.++|+||+|++++||++|+.||....
T Consensus       213 ~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~  245 (321)
T 2c30_A          213 ISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDS  245 (321)
T ss_dssp             HTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred             hcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            999899999999999999999999999997654

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=7.5e-33  Score=221.66  Aligned_cols=179  Identities=12%  Similarity=0.146  Sum_probs=144.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCK--   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~--   71 (202)
                      ||++++..+++.||.|+.....     ....+..|....... +|++++.      .+....++++++ +++|..++.  
T Consensus        25 V~~~~~~~~~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~   98 (330)
T 2izr_A           25 LRLGKNLYTNEYVAIKLEPMKS-----RAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL-GPSLEDLFDLC   98 (330)
T ss_dssp             EEEEEETTTTEEEEEEEEETTC-----SSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC-CCBHHHHHHHT
T ss_pred             EEEEEECCCCcEEEEEEecccc-----chHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC-CCCHHHHHHHc
Confidence            6889988888999988754321     123455666666665 7887653      334456888888 899998886  


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCc-----eEEeeeecceeccccCccc-----ccC
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF-----PKAADFGLAKLYNREHTHI-----TST  141 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~-----~kl~dfgl~~~~~~~~~~~-----~~~  141 (202)
                      ...+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.     ++|+|||+++.........     ...
T Consensus        99 ~~~~~~~~~~~i~~qi~~~l~~LH~---~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~  175 (330)
T 2izr_A           99 DRTFSLKTVLMIAIQLISRMEYVHS---KNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHK  175 (330)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccC
Confidence            4679999999999999999999999   99999999999999998887     9999999998754332211     124


Q ss_pred             CCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       142 ~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ...||+.|+|||++.+..++.++||||||++++||++|+.||.....
T Consensus       176 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~  222 (330)
T 2izr_A          176 SLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA  222 (330)
T ss_dssp             CCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC
T ss_pred             CcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCcccccc
Confidence            56789999999999999999999999999999999999999987543

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=3.8e-33  Score=237.68  Aligned_cols=181  Identities=19%  Similarity=0.218  Sum_probs=151.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++++..+++.||.|+..............+..|..++...+|++++.      .....+++++++++|+|..++... 
T Consensus       200 Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmEy~~gg~L~~~l~~~~  279 (576)
T 2acx_A          200 VCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMG  279 (576)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHSSS
T ss_pred             EEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcC
Confidence            6889998888888888765544443444455667777788889998763      345567899999999998877543 


Q ss_pred             --CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           74 --ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        74 --~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                        .+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+++.......   .....||+.|+|
T Consensus       280 ~~~l~e~~~~~i~~qIl~aL~yLH~---~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~---~~~~~GT~~Y~A  353 (576)
T 2acx_A          280 QAGFPEARAVFYAAEICCGLEDLHR---ERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT---IKGRVGTVGYMA  353 (576)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCC---EECCCSCGGGCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCchheEEEeCCCCeEEEecccceecccCcc---ccccCCCccccC
Confidence              39999999999999999999999   9999999999999999999999999999987644322   233578999999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ||++.+..++.++|+||+||++|||++|++||....
T Consensus       354 PEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~  389 (576)
T 2acx_A          354 PEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRK  389 (576)
T ss_dssp             HHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSS
T ss_pred             HHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccc
Confidence            999999889999999999999999999999998754

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=4.1e-33  Score=222.26  Aligned_cols=184  Identities=26%  Similarity=0.375  Sum_probs=144.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++++.. ++.||.|.....   .......+..|.......+|++++.      ..+...++++++++++|..++... 
T Consensus        55 Vy~~~~~~-~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  130 (321)
T 2qkw_B           55 VYKGVLRD-GAKVALKRRTPE---SSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSD  130 (321)
T ss_dssp             EEEEECTT-CCEEEEEECCSC---CSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEEEEECCTTCBTGGGSSSSC
T ss_pred             EEEEEECC-CCEEEEEEeccc---ChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEEcCCCCcHHHHHhccC
Confidence            67888654 445555543221   1122344666777777778888763      345567899999999999888554 


Q ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           74 ----ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        74 ----~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                          .+++..+..++.|++.||.|||+   ++++||||||+||+++.++.+||+|||+++...............||+.|
T Consensus       131 ~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y  207 (321)
T 2qkw_B          131 LPTMSMSWEQRLEICIGAARGLHYLHT---RAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGY  207 (321)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCSTTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETTT
T ss_pred             CCccccCHHHHHHHHHHHHHHHHHhcC---CCeecCCCCHHHEEECCCCCEEEeecccccccccccccccccccCCCccc
Confidence                48999999999999999999999   99999999999999999999999999999865433322233445679999


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcccc
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQ  191 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~~  191 (202)
                      +|||++.+..++.++||||+|++++||++|+.||....+.+.
T Consensus       208 ~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~  249 (321)
T 2qkw_B          208 IDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREM  249 (321)
T ss_dssp             CCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSC
T ss_pred             cCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHH
Confidence            999999888899999999999999999999999987665443

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.4e-33  Score=224.70  Aligned_cols=181  Identities=20%  Similarity=0.279  Sum_probs=147.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh-ccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC-KKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~-~~~   73 (202)
                      ||++++..+++.||.|+.........+...++..|.......+|++++.      ..+...++++++ +|+|..++ ...
T Consensus        25 V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~E~~-~g~l~~~l~~~~  103 (336)
T 3h4j_B           25 VKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVIEYA-GGELFDYIVEKK  103 (336)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCC-CEEHHHHHHHHC
T ss_pred             EEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEECC-CCcHHHHHHHcC
Confidence            6889998888889888765544334444556777888888889998774      334456778888 56666655 556


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.++..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||++........   .....||+.|+|||
T Consensus       104 ~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~---~~~~~gt~~y~aPE  177 (336)
T 3h4j_B          104 RMTEDEGRRFFQQIICAIEYCHR---HKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNF---LKTSCGSPNYAAPE  177 (336)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH---HTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBT---TCCCTTSTTTSCGG
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCchhhEEEcCCCCEEEEEeccceeccCCcc---cccccCCcCcCCHH
Confidence            79999999999999999999999   9999999999999999999999999999986544322   23456899999999


Q ss_pred             ccCCCCC-CchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSV-TQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~-~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..+ +.++||||+|+++|+|++|+.||.+...
T Consensus       178 ~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~  213 (336)
T 3h4j_B          178 VINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFI  213 (336)
T ss_dssp             GSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSS
T ss_pred             HHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccH
Confidence            9988775 6899999999999999999999986543

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=1.4e-33  Score=234.75  Aligned_cols=184  Identities=19%  Similarity=0.287  Sum_probs=141.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.||.|+.+............+..|.......+|++++.      ..+...++++++++++|..++.. .
T Consensus       164 V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  243 (446)
T 4ejn_A          164 VILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRER  243 (446)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEEECCCSSCBHHHHHHHHS
T ss_pred             EEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEEEeeCCCCcHHHHHHhcC
Confidence            6889999999999998866544333344455666777777778888763      33455688999999999887754 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+.  .+|+||||||+|||++.++.+||+|||+++......  .......||+.|+|||
T Consensus       244 ~~~~~~~~~~~~qi~~aL~~LH~~--~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE  319 (446)
T 4ejn_A          244 VFSEDRARFYGAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDG--ATMKTFCGTPEYLAPE  319 (446)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHH--TCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-------CCSSSCGGGCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhhc--CCEEECCCCHHHEEECCCCCEEEccCCCceeccCCC--cccccccCCccccCHh
Confidence            699999999999999999999952  689999999999999999999999999997533222  1234467899999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..++.++||||+||+++||++|+.||.....
T Consensus       320 ~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~  354 (446)
T 4ejn_A          320 VLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH  354 (446)
T ss_dssp             HHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             hcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH
Confidence            99999999999999999999999999999976544

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=3.8e-33  Score=223.00  Aligned_cols=183  Identities=20%  Similarity=0.227  Sum_probs=145.1

Q ss_pred             CCccccCCCcceee----hhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFIT----RTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++++...++.++    .|...  ..........+..+.......+|+|++.     .++...++++++.+++|..++.
T Consensus        29 Vy~~~~~~~~~~~~~kv~~K~~~--~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~~L~~~l~  106 (325)
T 3kex_A           29 VHKGVWIPEGESIKIPVCIKVIE--DKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQLVTQYLPLGSLLDHVR  106 (325)
T ss_dssp             EEEEEECCTTCSCCEEEEEEEEC--CTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECBSSEEEEEECCTTCBSHHHHH
T ss_pred             EEEEEEcCCCceEEEEEEEEecc--ccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCccEEEEEeCCCCCHHHHHH
Confidence            68888877766533    33321  1222344566778888888889998874     3445668999999999998886


Q ss_pred             cC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           72 KN--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        72 ~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                      ..  .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++...............|++.|
T Consensus       107 ~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y  183 (325)
T 3kex_A          107 QHRGALGPQLLLNWGVQIAKGMYYLEE---HGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKW  183 (325)
T ss_dssp             SSGGGSCTTHHHHHHHHHHHHHHHHHH---TTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTT
T ss_pred             HccccCCHHHHHHHHHHHHHHHHHHHh---CCCCCCccchheEEECCCCeEEECCCCcccccCcccccccccCCCCcccc
Confidence            53  69999999999999999999999   99999999999999999999999999999876544333333445678899


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      +|||.+.+..++.++||||+|+++||+++ |+.||.....
T Consensus       184 ~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~  223 (325)
T 3kex_A          184 MALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRL  223 (325)
T ss_dssp             SCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCT
T ss_pred             cChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCH
Confidence            99999998889999999999999999999 9999986543

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=6.3e-33  Score=225.16  Aligned_cols=182  Identities=18%  Similarity=0.248  Sum_probs=148.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccC---CcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMD---KPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++++..+++.+|.|+.+........   ....+..|..+....+|++++.      ......++++++++++|..++.
T Consensus        28 V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~  107 (361)
T 2yab_A           28 VKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLA  107 (361)
T ss_dssp             EEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHT
T ss_pred             EEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEEEEEEcCCCCcHHHHHH
Confidence            688999888888888765443322111   1234667777777888998763      3445678999999999998885


Q ss_pred             c-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC----ceEEeeeecceeccccCcccccCCCCCC
Q 044746           72 K-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF----FPKAADFGLAKLYNREHTHITSTGRRRT  146 (202)
Q Consensus        72 ~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~----~~kl~dfgl~~~~~~~~~~~~~~~~~gt  146 (202)
                      . ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++    .+||+|||++........   .....||
T Consensus       108 ~~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~~~~---~~~~~gt  181 (361)
T 2yab_A          108 QKESLSEEEATSFIKQILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE---FKNIFGT  181 (361)
T ss_dssp             TCSCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCTTCC---CCCCCSC
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCCCCc---cccCCCC
Confidence            4 469999999999999999999999   9999999999999998776    799999999987654322   2345689


Q ss_pred             CcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       147 ~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +.|+|||++.+..++.++|+||+||++|+|++|.+||.+...
T Consensus       182 ~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~  223 (361)
T 2yab_A          182 PEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK  223 (361)
T ss_dssp             GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH
T ss_pred             ccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH
Confidence            999999999998999999999999999999999999976544

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=2e-33  Score=225.35  Aligned_cols=181  Identities=22%  Similarity=0.282  Sum_probs=147.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||++++..+++.||.|+....... .....++..|.......+|+|++.      ..+...++++++++++|..++. .+
T Consensus        31 V~~a~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  109 (328)
T 3fe3_A           31 VKLARHILTGREVAIKIIDKTQLN-PTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHG  109 (328)
T ss_dssp             EEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHHHC
T ss_pred             EEEEEECCCCCEEEEEEEEhhcCC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEECCCCCcHHHHHHHcC
Confidence            688999888888888875433211 122334666777788888998774      3445568899999999988774 46


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.++..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||++........   .....||+.|+|||
T Consensus       110 ~l~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE  183 (328)
T 3fe3_A          110 RMKEKEARSKFRQIVSAVQYCHQ---KRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGK---LDAFCGAPPYAAPE  183 (328)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCG---GGTTSSSGGGCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCCc---cccccCCcceeCcc
Confidence            79999999999999999999999   9999999999999999999999999999976543322   24456899999999


Q ss_pred             ccCCCCCC-chhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVT-QKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~-~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..++ .++||||+||++++|++|+.||.+...
T Consensus       184 ~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~  219 (328)
T 3fe3_A          184 LFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL  219 (328)
T ss_dssp             HHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             cccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCH
Confidence            99887765 789999999999999999999987553

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=1e-32  Score=217.73  Aligned_cols=182  Identities=23%  Similarity=0.268  Sum_probs=146.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhc-----------------------cCCcccCCcHHHHHHhccccccccc-------
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAME-----------------------MDKPIRFTSPQRMIAADNFSNLVGS-------   50 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~i~~-------   50 (202)
                      ||++++..+++.||.|+........                       ......+..|.......+|++++..       
T Consensus        29 Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  108 (298)
T 2zv2_A           29 VKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVKLVEVLDDP  108 (298)
T ss_dssp             EEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTCCCTTBCCEEEEEECS
T ss_pred             EEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhCCCCCCCeEEEEEEcC
Confidence            6899998888888888754432111                       1123446677778888899987631       


Q ss_pred             -cccceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecce
Q 044746           51 -EDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK  129 (202)
Q Consensus        51 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~  129 (202)
                       .....++++++++++|..+.....+++.++..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++
T Consensus       109 ~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~  185 (298)
T 2zv2_A          109 NEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHY---QKIIHRDIKPSNLLVGEDGHIKIADFGVSN  185 (298)
T ss_dssp             SSSEEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             CCCEEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEECCCCCEEEecCCCcc
Confidence             3455788999999999998888889999999999999999999999   999999999999999999999999999998


Q ss_pred             eccccCcccccCCCCCCCcccCCcccCCCC---CCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          130 LYNREHTHITSTGRRRTPGCEAPELWMPYS---VTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       130 ~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~---~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      .......  ......||+.|+|||.+.+..   ++.++||||+|+++++|++|+.||....
T Consensus       186 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~  244 (298)
T 2zv2_A          186 EFKGSDA--LLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER  244 (298)
T ss_dssp             ECSSSSC--EECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             ccccccc--cccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCcc
Confidence            7543322  123456899999999998654   3778999999999999999999997643

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=7.1e-33  Score=225.46  Aligned_cols=175  Identities=23%  Similarity=0.280  Sum_probs=138.9

Q ss_pred             CcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhccC--------
Q 044746            9 STRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN--------   73 (202)
Q Consensus         9 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~--------   73 (202)
                      .+..||.|+.+...  .......+..|....... +|+|++.      ..+..+++++++++|+|..++...        
T Consensus       112 ~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~  189 (370)
T 2psq_A          112 EAVTVAVKMLKDDA--TEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYS  189 (370)
T ss_dssp             CEEEEEEEECCTTC--BHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCC-----
T ss_pred             cceeEEEEEecCCc--CHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCCCEEEEEEcCCCCCHHHHHHhhCCcccccc
Confidence            44557766654321  112233466676666666 7888763      344567899999999999888543        


Q ss_pred             ---------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCC
Q 044746           74 ---------ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRR  144 (202)
Q Consensus        74 ---------~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~  144 (202)
                               .+++.++..++.|++.||.|||+   ++|+||||||+||+++.++.+||+|||+++...............
T Consensus       190 ~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~  266 (370)
T 2psq_A          190 YDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGR  266 (370)
T ss_dssp             ------CCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTT
T ss_pred             ccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCeeccccchhhEEECCCCCEEEccccCCcccCcccceecccCCC
Confidence                     48999999999999999999999   999999999999999999999999999998765443333334455


Q ss_pred             CCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          145 RTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       145 gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      +|+.|+|||++.+..++.++|||||||++|||++ |+.||.....
T Consensus       267 ~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~  311 (370)
T 2psq_A          267 LPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV  311 (370)
T ss_dssp             SCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred             cccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCH
Confidence            6889999999999899999999999999999999 9999986543

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=4.6e-34  Score=226.95  Aligned_cols=185  Identities=18%  Similarity=0.242  Sum_probs=140.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc----------cceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED----------TETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++++...++.||.|+.+...........++..|.......+|+|++...+          ..+++++++++++|..++
T Consensus        28 V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l  107 (311)
T 3ork_A           28 VHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIV  107 (311)
T ss_dssp             EEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEEEEEECCCEEEHHHHH
T ss_pred             EEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccEEEEecCCCCCHHHHH
Confidence            6889998888888888765432222222334556666666778888774221          227889999999999888


Q ss_pred             cc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc-cccCCCCCCCc
Q 044746           71 KK-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-ITSTGRRRTPG  148 (202)
Q Consensus        71 ~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~gt~~  148 (202)
                      .. ..+++.++..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++........ .......||+.
T Consensus       108 ~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~  184 (311)
T 3ork_A          108 HTEGPMTPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQ  184 (311)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEETTSCEEECCCSCC------------------CCT
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHH---CCCCcCCCCHHHEEEcCCCCEEEeeccCcccccccccccccccccCcCcc
Confidence            54 569999999999999999999999   99999999999999999999999999999865433221 12233568999


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |+|||++.+..++.++||||+|+++|||++|+.||....+
T Consensus       185 y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~  224 (311)
T 3ork_A          185 YLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSP  224 (311)
T ss_dssp             TCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             cCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCh
Confidence            9999999998999999999999999999999999986654

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.98  E-value=6.5e-33  Score=224.11  Aligned_cols=182  Identities=18%  Similarity=0.197  Sum_probs=146.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhcc--CCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEM--DKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++++..+++.||.|+.........  .....+..|..+....+|+|++.      ..+..+++++++++++|...+..
T Consensus        40 V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~  119 (351)
T 3c0i_A           40 VRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVK  119 (351)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSSCBHHHHHHH
T ss_pred             EEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEeCCCCCCHHHHHHH
Confidence            68999988888888887544332221  22345777888888889998874      34456789999999999766532


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCc---eEEeeeecceeccccCcccccCCCC
Q 044746           73 -----NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF---PKAADFGLAKLYNREHTHITSTGRR  144 (202)
Q Consensus        73 -----~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~---~kl~dfgl~~~~~~~~~~~~~~~~~  144 (202)
                           ..+++..+..++.|++.||.|||+   ++|+||||||+||+++.++.   +||+|||++........  ......
T Consensus       120 ~~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~--~~~~~~  194 (351)
T 3c0i_A          120 RADAGFVYSEAVASHYMRQILEALRYCHD---NNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGL--VAGGRV  194 (351)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSC--BCCCCC
T ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCChHHeEEecCCCCCcEEEecCcceeEecCCCe--eecCCc
Confidence                 248999999999999999999999   99999999999999976554   99999999987654322  223456


Q ss_pred             CCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          145 RTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       145 gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ||+.|+|||++.+..++.++||||+||++|+|++|+.||....
T Consensus       195 gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~  237 (351)
T 3c0i_A          195 GTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK  237 (351)
T ss_dssp             SCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH
T ss_pred             CCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH
Confidence            8999999999999899999999999999999999999997654

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.98  E-value=1.6e-32  Score=219.64  Aligned_cols=182  Identities=19%  Similarity=0.249  Sum_probs=147.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccC---CcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMD---KPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++++..+++.+|.|+.+........   ....+..|.......+|++++.      ......++++++++++|..++.
T Consensus        27 V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~  106 (326)
T 2y0a_A           27 VKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLA  106 (326)
T ss_dssp             EEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHT
T ss_pred             EEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEEcCCCCCHHHHHH
Confidence            688999888888888765443222111   2234667777788888998763      3445678899999999998885


Q ss_pred             c-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC----ceEEeeeecceeccccCcccccCCCCCC
Q 044746           72 K-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF----FPKAADFGLAKLYNREHTHITSTGRRRT  146 (202)
Q Consensus        72 ~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~----~~kl~dfgl~~~~~~~~~~~~~~~~~gt  146 (202)
                      . ..+++.++..++.|++.||.|||+   .+++||||||+||+++.++    .+||+|||+++.......   .....||
T Consensus       107 ~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt  180 (326)
T 2y0a_A          107 EKESLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNE---FKNIFGT  180 (326)
T ss_dssp             TSSCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTTSC---CCCCCSC
T ss_pred             hcCCcCHHHHHHHHHHHHHHHHHHHH---CCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCCCc---cccccCC
Confidence            4 469999999999999999999999   9999999999999998877    799999999987643322   2345689


Q ss_pred             CcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       147 ~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +.|+|||++.+..++.++|+||+||++++|++|++||.....
T Consensus       181 ~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~  222 (326)
T 2y0a_A          181 PEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK  222 (326)
T ss_dssp             TTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH
T ss_pred             cCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH
Confidence            999999999988999999999999999999999999976543

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.98  E-value=1.3e-32  Score=218.27  Aligned_cols=183  Identities=25%  Similarity=0.344  Sum_probs=146.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..++..|+.|......   .+....|..|.......+|++++.      ..+...++++++++++|..++..  
T Consensus        26 V~~~~~~~~~~~va~K~~~~~~---~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  102 (310)
T 3s95_A           26 AIKVTHRETGEVMVMKELIRFD---EETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMD  102 (310)
T ss_dssp             EEEEEETTTCCEEEEEEESCCC---HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHCC
T ss_pred             EEEEEECCCCcEEEEEEeccCC---HHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEecCCCcHHHHHHhcc
Confidence            6889988888888877543221   122345667777788888998774      34456689999999999998865  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc------------cc
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI------------TS  140 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~------------~~  140 (202)
                      ..+++.++..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++.........            ..
T Consensus       103 ~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (310)
T 3s95_A          103 SQYPWSQRVSFAKDIASGMAYLHS---MNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKR  179 (310)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEECTTSCEEECCCTTCEECC--------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCcCeEEECCCCCEEEeecccceecccccccccccccccccccccc
Confidence            569999999999999999999999   999999999999999999999999999998754332211            11


Q ss_pred             CCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          141 TGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       141 ~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      ....||+.|+|||++.+..++.++||||+|++++||++|..|+....+.
T Consensus       180 ~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~  228 (310)
T 3s95_A          180 YTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPR  228 (310)
T ss_dssp             CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCB
T ss_pred             cccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhh
Confidence            1456899999999999999999999999999999999999998765443

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.98  E-value=3e-33  Score=223.87  Aligned_cols=183  Identities=20%  Similarity=0.248  Sum_probs=138.9

Q ss_pred             CCccccCCCcceee----hhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFIT----RTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++++...++.++    .|..+.  ........+|..|.......+|+|++.     ..+...++++++.+|+|..++.
T Consensus        31 Vy~~~~~~~~~~~~~~vaiK~~~~--~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~g~L~~~l~  108 (327)
T 3poz_A           31 VYKGLWIPEGEKVKIPVAIKELRE--ATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVR  108 (327)
T ss_dssp             EEEEEECC----CCEEEEEEEC---------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSSEEEEEECCTTCBHHHHHH
T ss_pred             EEEEEEcCCCceEEEEEEEeeccc--ccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCCcHHHHHH
Confidence            68888776666553    332221  122233456777888888889998773     2233568889999999998885


Q ss_pred             c--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           72 K--NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        72 ~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                      .  ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++...............+|+.|
T Consensus       109 ~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y  185 (327)
T 3poz_A          109 EHKDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKW  185 (327)
T ss_dssp             HSTTSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGG
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCChheEEECCCCCEEEccCcceeEccCCcccccccCCCccccc
Confidence            4  469999999999999999999999   99999999999999999999999999999876544443334445668899


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      +|||.+.+..++.++||||||+++|||++ |+.||.....
T Consensus       186 ~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~  225 (327)
T 3poz_A          186 MALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA  225 (327)
T ss_dssp             SCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG
T ss_pred             cChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCH
Confidence            99999999899999999999999999999 9999986544

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.98  E-value=2.3e-32  Score=218.86  Aligned_cols=183  Identities=18%  Similarity=0.235  Sum_probs=137.5

Q ss_pred             CCccccC---CCcceeehhhhchhhh-hccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNR---GSTRFITRTIDKSLDA-MEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~---~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++++.   ..++.+|.|+.+.... ........+..|..+....+|++++.      ..+..+++++++++++|..++
T Consensus        33 V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l  112 (327)
T 3a62_A           33 VFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQL  112 (327)
T ss_dssp             EEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCEEEEEECCTTEEHHHHH
T ss_pred             EEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEEEEEEeCCCCCcHHHHH
Confidence            5676663   5677777776543321 12233445677878888888998764      345567899999999998887


Q ss_pred             cc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           71 KK-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        71 ~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                      .. +.+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+++.......  ......||+.|
T Consensus       113 ~~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y  187 (327)
T 3a62_A          113 EREGIFMEDTACFYLAEISMALGHLHQ---KGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGT--VTHTFCGTIEY  187 (327)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCTTTEEECTTSCEEECCCSCC------------CTTSSCCTT
T ss_pred             HhCCCCCHHHHHHHHHHHHHHHHHHHh---CCEEcccCCHHHeEECCCCcEEEEeCCcccccccCCc--cccccCCCcCc
Confidence            54 568999999999999999999999   9999999999999999999999999999875432221  12345689999


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +|||++.+..++.++|+||+|+++|||++|+.||.....
T Consensus       188 ~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~  226 (327)
T 3a62_A          188 MAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENR  226 (327)
T ss_dssp             SCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             cCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCH
Confidence            999999988999999999999999999999999986543

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.98  E-value=1.2e-32  Score=229.10  Aligned_cols=182  Identities=18%  Similarity=0.198  Sum_probs=146.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||++++..+++.+|.|+....... ......+..|..+....+|+|++.      ..+...++++++.+|+|...+. ..
T Consensus        27 V~~~~~~~~~~~~a~K~i~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~i~~~~  105 (444)
T 3soa_A           27 VRRCVKVLAGQEYAAMIINTKKLS-ARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVARE  105 (444)
T ss_dssp             EEEEEETTTTEEEEEEEEESCSCH-HHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEECCCBCCBHHHHHHHCS
T ss_pred             EEEEEECCCCcEEEEEEEEcccCC-HHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEEEeCCCCCHHHHHHHcC
Confidence            688888888888887764332211 112344667777888889998874      4455678899999999977664 45


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc---CCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD---ENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~---~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      .+++.++..++.|++.||.|||+   .+|+||||||+||+++   .++.+||+|||++........  ......||+.|+
T Consensus       106 ~~~e~~~~~i~~qil~aL~~lH~---~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~--~~~~~~gt~~Y~  180 (444)
T 3soa_A          106 YYSEADASHCIQQILEAVLHCHQ---MGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQ--AWFGFAGTPGYL  180 (444)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCC--BCCCSCSCGGGC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCc--eeecccCCcccC
Confidence            69999999999999999999999   9999999999999998   467899999999976543322  223467899999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |||++.+..++.++||||+||++|+|++|++||.+...
T Consensus       181 APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~  218 (444)
T 3soa_A          181 SPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQ  218 (444)
T ss_dssp             CHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             CHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccH
Confidence            99999998999999999999999999999999976543

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.98  E-value=1.6e-32  Score=224.39  Aligned_cols=184  Identities=14%  Similarity=0.106  Sum_probs=147.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..+++.||.|+...... ..+....+..|..+....+|+|++.      ..+..+++++++++++|..++..  
T Consensus        43 V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  121 (389)
T 3gni_B           43 VNLARYKPTGEYVTVRRINLEAC-SNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHF  121 (389)
T ss_dssp             EEEEEETTTCCEEEEEEEEGGGS-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTC
T ss_pred             EEEEEEcCCCCEEEEEEeccccc-ChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEEEEEccCCCCHHHHHhhhc
Confidence            68999998888888887644321 1223345667778888889998874      34456688999999999888754  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc-----ccccCCCCCC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT-----HITSTGRRRT  146 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~-----~~~~~~~~gt  146 (202)
                       ..+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||.+........     ........||
T Consensus       122 ~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt  198 (389)
T 3gni_B          122 MDGMNELAIAYILQGVLKALDYIHH---MGYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKV  198 (389)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTT
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEcccccceeecccccccccccccccccccc
Confidence             569999999999999999999999   9999999999999999999999999998875432111     1112234679


Q ss_pred             CcccCCcccCC--CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          147 PGCEAPELWMP--YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       147 ~~y~aPe~~~~--~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +.|+|||++.+  ..++.++||||+||+++||++|++||.+...
T Consensus       199 ~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~  242 (389)
T 3gni_B          199 LPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPA  242 (389)
T ss_dssp             GGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCS
T ss_pred             ccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCH
Confidence            99999999987  5789999999999999999999999976544

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.97  E-value=7e-33  Score=231.67  Aligned_cols=179  Identities=17%  Similarity=0.175  Sum_probs=137.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc------------cceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED------------TETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------~~~~~~~~~~~~~l~~   68 (202)
                      ||++++...++.||.|+...... ......++..|..+....+|+|++...+            ...+++++++++ +..
T Consensus        78 V~~a~~~~~~~~vAiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~E~~~~~-l~~  155 (464)
T 3ttj_A           78 VCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDAN-LCQ  155 (464)
T ss_dssp             EEEEEETTTTEEEEEEEEESGGG-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSEE-HHH
T ss_pred             EEEEEECCCCCEEEEEEECcccc-ChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCCeEEEEEeCCCCC-HHH
Confidence            68898888888888876543211 1122345667777788889998874322            236888888765 444


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      ... ..+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+++......   ......||+.
T Consensus       156 ~~~-~~l~~~~~~~~~~qil~aL~~lH~---~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~---~~~~~~gt~~  228 (464)
T 3ttj_A          156 VIQ-MELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF---MMTPYVVTRY  228 (464)
T ss_dssp             HHT-SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCCCC-----CC---CC----CCCT
T ss_pred             HHh-hcCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChHhEEEeCCCCEEEEEEEeeeecCCCc---ccCCCccccc
Confidence            443 359999999999999999999999   999999999999999999999999999998654322   2244567999


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |+|||++.+..++.++||||+||+++||++|++||.+...
T Consensus       229 y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~  268 (464)
T 3ttj_A          229 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDY  268 (464)
T ss_dssp             TCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             ccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            9999999999999999999999999999999999987653

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.97  E-value=4.3e-33  Score=227.16  Aligned_cols=183  Identities=19%  Similarity=0.259  Sum_probs=147.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..+++.||.|+.+..  ...+...+|..|.......+|+|++.      ..+...++++++++|+|..++..  
T Consensus       130 V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  207 (377)
T 3cbl_A          130 VFSGRLRADNTLVAVKSCRET--LPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEG  207 (377)
T ss_dssp             EEEEEETTTCCEEEEEECCTT--SCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHG
T ss_pred             EEEEEEecCCeEEEEEEcccc--CCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEcCCCCCHHHHHHhcC
Confidence            688888888888888875432  11222346888888888889998773      33456789999999999988854  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++...............+++.|+||
T Consensus       208 ~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aP  284 (377)
T 3cbl_A          208 ARLRVKTLLQMVGDAAAGMEYLES---KCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAP  284 (377)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCcCCH
Confidence            359999999999999999999999   99999999999999999999999999999865433222222222346789999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |.+....++.++||||||+++||+++ |+.||.....
T Consensus       285 E~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~  321 (377)
T 3cbl_A          285 EALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSN  321 (377)
T ss_dssp             HHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCH
T ss_pred             hHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            99988889999999999999999998 9999986544

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.97  E-value=2.3e-32  Score=228.96  Aligned_cols=181  Identities=18%  Similarity=0.276  Sum_probs=150.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.||.|+.........+....+..|.......+|++++.      ..+...++++++++++|..++.. +
T Consensus        32 V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~  111 (476)
T 2y94_A           32 VKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNG  111 (476)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSSEEHHHHTTSSS
T ss_pred             EEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHhcC
Confidence            6889998888889888765544444444456777777888888998763      34456789999999999988854 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.++..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||++........   .....||+.|+|||
T Consensus       112 ~l~~~~~~~i~~qi~~aL~~LH~---~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~---~~~~~gt~~y~aPE  185 (476)
T 2y94_A          112 RLDEKESRRLFQQILSGVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF---LRTSCGSPNYAAPE  185 (476)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTCC---BCCCCSCSTTCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCCCcccccHHHEEEecCCCeEEEeccchhhcccccc---ccccCCCcCeEChh
Confidence            69999999999999999999999   9999999999999999999999999999987654322   23456899999999


Q ss_pred             ccCCCCC-CchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMPYSV-TQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~-~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ++.+..+ +.++||||+||++++|++|+.||.+..
T Consensus       186 ~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~  220 (476)
T 2y94_A          186 VISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDH  220 (476)
T ss_dssp             HHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             hccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCC
Confidence            9988765 689999999999999999999998654

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.97  E-value=1.8e-32  Score=222.36  Aligned_cols=183  Identities=14%  Similarity=0.097  Sum_probs=136.9

Q ss_pred             CCccccCCC-----cceeehhhhchhhhh---ccCCcccCCc-----HHHHHHhcccccccccc----------ccceEE
Q 044746            1 MEKPRNRGS-----TRFITRTIDKSLDAM---EMDKPIRFTS-----PQRMIAADNFSNLVGSE----------DTETYI   57 (202)
Q Consensus         1 v~k~~~~~~-----~~~v~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~i~~~----------~~~~~~   57 (202)
                      ||++++..+     ++.||.|+.......   +.....++..     +.......+|++++...          .+..++
T Consensus        51 Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~~lv  130 (364)
T 3op5_A           51 IYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMI  130 (364)
T ss_dssp             EEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEEEEEEEEETTEEEEEEE
T ss_pred             EEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEEeeeeeccCCcceEEEE
Confidence            677777654     466777764332211   0111111222     22334455678776321          335688


Q ss_pred             EEEccCCchhhhhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc--CCCceEEeeeecceeccc
Q 044746           58 KGFLAMGPFYLLCKK--NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD--ENFFPKAADFGLAKLYNR  133 (202)
Q Consensus        58 ~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~--~~~~~kl~dfgl~~~~~~  133 (202)
                      ++++ +++|..++..  ..+++..+..++.|++.||.|||+   .+|+||||||+|||++  .++.+||+|||+++....
T Consensus       131 ~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~---~~iiHrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~  206 (364)
T 3op5_A          131 MDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHE---HEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCP  206 (364)
T ss_dssp             EECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEESSCTTCEEECCCTTCEESSG
T ss_pred             EeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH---CCeEEecCCHHHEEEecCCCCeEEEEECCcceeccc
Confidence            8888 8999988865  469999999999999999999999   9999999999999999  889999999999987643


Q ss_pred             cCccc-----ccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          134 EHTHI-----TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       134 ~~~~~-----~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      .....     ......||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus       207 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~  265 (364)
T 3op5_A          207 EGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNL  265 (364)
T ss_dssp             GGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGT
T ss_pred             CCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccc
Confidence            32211     1133458999999999999999999999999999999999999998643

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.97  E-value=1.8e-32  Score=222.52  Aligned_cols=180  Identities=20%  Similarity=0.246  Sum_probs=145.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||++++..+++.+|.|+....... ......+..|..+....+|+|++.      ..+..+++++++.+++|...+. ..
T Consensus        45 V~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~  123 (362)
T 2bdw_A           45 VRRCVHKTTGLEFAAKIINTKKLS-ARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVARE  123 (362)
T ss_dssp             EEEEEETTTCCEEEEEEEETTTCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTTCS
T ss_pred             EEEEEECCCCCEEEEEEEEcccCC-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHHHHcC
Confidence            688988888888888775432211 112344667777888889998874      3445668899999999977764 45


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC---CceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN---FFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~---~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      .+++.++..++.|++.||.|||+   .+|+||||||+||+++.+   +.+||+|||++........   .....||+.|+
T Consensus       124 ~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~---~~~~~gt~~y~  197 (362)
T 2bdw_A          124 FYSEADASHCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA---WHGFAGTPGYL  197 (362)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCS---CCCSCSCTTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCcc---cccCCCCcccc
Confidence            68999999999999999999999   999999999999999764   4599999999986543221   23456899999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |||++.+..++.++||||+||++|+|++|++||.+..
T Consensus       198 aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~  234 (362)
T 2bdw_A          198 SPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED  234 (362)
T ss_dssp             CHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             CHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC
Confidence            9999999899999999999999999999999997654

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.97  E-value=3e-32  Score=217.13  Aligned_cols=179  Identities=16%  Similarity=0.214  Sum_probs=144.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++++..+++.||.|+.+....  ......+..|.......+|++++..        .....++++++++++|..++..
T Consensus        25 V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~  102 (319)
T 4euu_A           25 VFRGRHKKTGDLFAIKVFNNISF--LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEE  102 (319)
T ss_dssp             EEEEEETTTCCEEEEEEECGGGG--GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEECCTTCBHHHHHHS
T ss_pred             EEEEEECCCCcEEEEEEeccccc--cchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEEeCCCCCCHHHHHHH
Confidence            68999998888888887544322  1223445567777788889987642        2244689999999999988865


Q ss_pred             CC----CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEE----cCCCceEEeeeecceeccccCcccccCCCC
Q 044746           73 NI----LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL----DENFFPKAADFGLAKLYNREHTHITSTGRR  144 (202)
Q Consensus        73 ~~----~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~----~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~  144 (202)
                      ..    +++.++..++.|++.||.|||+   .+++||||||+||++    +.++.+||+|||+++.......   .....
T Consensus       103 ~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~---~~~~~  176 (319)
T 4euu_A          103 PSNAYGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ---FVSLY  176 (319)
T ss_dssp             GGGTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCC---BCCCC
T ss_pred             hccccCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCc---eeecc
Confidence            32    9999999999999999999999   999999999999999    7778899999999987654332   23356


Q ss_pred             CCCcccCCcccC--------CCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          145 RTPGCEAPELWM--------PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       145 gt~~y~aPe~~~--------~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ||+.|+|||++.        +..++.++||||+||++|||++|+.||....
T Consensus       177 gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  227 (319)
T 4euu_A          177 GTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFE  227 (319)
T ss_dssp             SCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTT
T ss_pred             cCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            799999999985        5678899999999999999999999997543

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1e-32  Score=220.52  Aligned_cols=178  Identities=16%  Similarity=0.235  Sum_probs=145.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++++..+++.++.|+.+....    ....+..|..+....+|+|++.      ..+...++++++++++|..++... 
T Consensus        21 Vy~~~~~~~~~~~a~K~~~~~~~----~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~   96 (321)
T 1tki_A           21 VHRCVETSSKKTYMAKFVKVKGT----DQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSA   96 (321)
T ss_dssp             EEEEEETTTTEEEEEEEECCCTH----HHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTSSS
T ss_pred             EEEEEECCCCcEEEEEEEecCcc----cHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeCCCCCHHHHHHhcC
Confidence            68899988888888876543211    1233566777778888998774      334556889999999999988654 


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC--CCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE--NFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~--~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                       .+++.++..++.|++.||.|||+   .+++||||||+||+++.  ++.+||+|||+++........   ....||+.|+
T Consensus        97 ~~~~~~~~~~i~~qi~~al~~lH~---~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~---~~~~gt~~y~  170 (321)
T 1tki_A           97 FELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNF---RLLFTAPEYY  170 (321)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEE---EEEESCGGGS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCcc---ccccCChhhc
Confidence             59999999999999999999999   99999999999999987  789999999999876443222   2345799999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |||++.+..++.++||||+|+++|+|++|++||.....
T Consensus       171 aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~  208 (321)
T 1tki_A          171 APEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN  208 (321)
T ss_dssp             CHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH
T ss_pred             CcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH
Confidence            99999988889999999999999999999999976554

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.97  E-value=3.1e-32  Score=217.09  Aligned_cols=180  Identities=21%  Similarity=0.286  Sum_probs=143.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..+++.||.|+.+...  .......+..|.......+|++++.      ..+...+++++++ ++|..++..  
T Consensus        21 V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~   97 (317)
T 2pmi_A           21 VYKGLNKTTGVYVALKEVKLDS--EEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFEFMD-NDLKKYMDSRT   97 (317)
T ss_dssp             EEEEECSSSCCEEEEEEEECCS--TTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEECCC-CBHHHHHHHHH
T ss_pred             EEEEEECCCCcEEEEEEeeccc--ccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEEecC-CCHHHHHHhcc
Confidence            6899998888888888654332  1222344566777778888998763      3344568888888 577776643  


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCC
Q 044746           73 -----NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP  147 (202)
Q Consensus        73 -----~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~  147 (202)
                           ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+++.......  ......||+
T Consensus        98 ~~~~~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~t~  172 (317)
T 2pmi_A           98 VGNTPRGLELNLVKYFQWQLLQGLAFCHE---NKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVN--TFSSEVVTL  172 (317)
T ss_dssp             SSSCCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCSSCEETTSCCC--CCCCCCSCC
T ss_pred             ccccccCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCChHHeEEcCCCCEEECcCccceecCCCcc--cCCCCcccc
Confidence                 358999999999999999999999   9999999999999999999999999999987543222  123456799


Q ss_pred             cccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          148 GCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       148 ~y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .|+|||++.+ ..++.++||||+||+++||++|++||.....
T Consensus       173 ~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~  214 (317)
T 2pmi_A          173 WYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTND  214 (317)
T ss_dssp             TTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             cccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh
Confidence            9999999976 4689999999999999999999999976554

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.97  E-value=3.4e-32  Score=223.57  Aligned_cols=174  Identities=21%  Similarity=0.290  Sum_probs=134.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHH-HHhcccccccc---c-------cccceEEEEEccCCchhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRM-IAADNFSNLVG---S-------EDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~---~-------~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++++..+++.||.|+.+...        .+..|... ....+|++++.   .       ....+++++++++|+|..+
T Consensus        78 V~~~~~~~~~~~vAiK~~~~~~--------~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~gg~L~~~  149 (400)
T 1nxk_A           78 VLQIFNKRTQEKFALKMLQDCP--------KARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSR  149 (400)
T ss_dssp             EEEEEETTTCCEEEEEEEECSH--------HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHH
T ss_pred             EEEEEECCCCCEEEEEEeCcch--------hHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEeCCCCcHHHH
Confidence            6889998888888888754321        12223222 24456776653   1       3345688999999999998


Q ss_pred             hccC---CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC---CCceEEeeeecceeccccCcccccCCC
Q 044746           70 CKKN---ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHITSTGR  143 (202)
Q Consensus        70 ~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~---~~~~kl~dfgl~~~~~~~~~~~~~~~~  143 (202)
                      +...   .+++.++..++.|++.||.|||+   .+|+||||||+|||++.   ++.+||+|||+++.......   ....
T Consensus       150 l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~---~~~~  223 (400)
T 1nxk_A          150 IQDRGDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNS---LTTP  223 (400)
T ss_dssp             HHCC---CCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC-----------
T ss_pred             HHHhCCCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCcCcceEEEecCCCCccEEEEecccccccCCCCc---cccC
Confidence            8653   49999999999999999999999   99999999999999987   78999999999986543221   2345


Q ss_pred             CCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .||+.|+|||++.+..++.++||||+||++|||++|+.||.....
T Consensus       224 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~  268 (400)
T 1nxk_A          224 CYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG  268 (400)
T ss_dssp             ---CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTT
T ss_pred             CCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCcc
Confidence            679999999999998999999999999999999999999976554

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.97  E-value=6.1e-32  Score=217.21  Aligned_cols=182  Identities=18%  Similarity=0.205  Sum_probs=148.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhc-----cCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCC-chhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAME-----MDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMG-PFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~-~l~~   68 (202)
                      ||++++..+++.||.|+.+......     ......+..|.......+|++++.      ..+...++++++.+| +|..
T Consensus        40 Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~~~~lv~e~~~~g~~l~~  119 (335)
T 3dls_A           40 VWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFA  119 (335)
T ss_dssp             EEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTSCBHHH
T ss_pred             EEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCCEEEEEEEeCCCCccHHH
Confidence            7899988888888888755443221     124456777888888889998764      344556788888766 8888


Q ss_pred             hhccC-CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCC
Q 044746           69 LCKKN-ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP  147 (202)
Q Consensus        69 ~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~  147 (202)
                      ++... .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||++.........   ....||+
T Consensus       120 ~~~~~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~---~~~~gt~  193 (335)
T 3dls_A          120 FIDRHPRLDEPLASYIFRQLVSAVGYLRL---KDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLF---YTFCGTI  193 (335)
T ss_dssp             HHHTCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTCCB---CEECSCG
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHh---CCeEEeccCHHHEEEcCCCcEEEeecccceECCCCCce---eccCCCc
Confidence            87655 69999999999999999999999   99999999999999999999999999999876543322   2345799


Q ss_pred             cccCCcccCCCCC-CchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          148 GCEAPELWMPYSV-TQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       148 ~y~aPe~~~~~~~-~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .|+|||++.+..+ +.++||||+|+++|+|++|+.||.....
T Consensus       194 ~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~  235 (335)
T 3dls_A          194 EYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE  235 (335)
T ss_dssp             GGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG
T ss_pred             cccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH
Confidence            9999999988776 7889999999999999999999976544

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=2.6e-32  Score=221.95  Aligned_cols=178  Identities=21%  Similarity=0.239  Sum_probs=144.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc------------ccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE------------DTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------~~~~~~~~~~~~~~l~~   68 (202)
                      ||++++..+++.||.|....... ......++..|.......+|+|++...            ...+++++++ +++|..
T Consensus        41 V~~a~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~  118 (367)
T 1cm8_A           41 VCSAVDGRTGAKVAIKKLYRPFQ-SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGK  118 (367)
T ss_dssp             EEEEEETTTCCEEEEEECSSTTS-SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHH
T ss_pred             EEEEEECCCCCEEEEEEeCcccc-CHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCceEEEEEecC-CCCHHH
Confidence            68888888888888776432211 111234466777778888899887421            1236778887 789999


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      ++....+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+++.....     .....+|+.
T Consensus       119 ~~~~~~l~~~~~~~~~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~-----~~~~~~t~~  190 (367)
T 1cm8_A          119 LMKHEKLGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLARQADSE-----MTGYVVTRW  190 (367)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEECCSS-----CCSSCSCGG
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCcCHHHEEEcCCCCEEEEeeecccccccc-----cCcCcCCCC
Confidence            9988899999999999999999999999   99999999999999999999999999999875432     234567999


Q ss_pred             ccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          149 CEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       149 y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |+|||++.+ ..++.++|+||+||+++||++|++||.+...
T Consensus       191 y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~  231 (367)
T 1cm8_A          191 YRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDH  231 (367)
T ss_dssp             GCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             cCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            999999876 6789999999999999999999999986554

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.97  E-value=7.8e-32  Score=211.86  Aligned_cols=179  Identities=15%  Similarity=0.160  Sum_probs=141.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc-------cccccceEEEEEccCCchhhhhc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV-------GSEDTETYIKGFLAMGPFYLLCK--   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~~~~~~~~~~~~l~~~~~--   71 (202)
                      ||++++...++.||.|+.....     ....+..|.......+|++.+       ..+....++++++ +++|..++.  
T Consensus        25 V~~~~~~~~~~~vavK~~~~~~-----~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~   98 (296)
T 4hgt_A           25 IYLGTDIAAGEEVAIKLECVKT-----KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFC   98 (296)
T ss_dssp             EEEEEETTTTEEEEEEEEEC--------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHT
T ss_pred             EEEEEEcCCCceEEEEeecccc-----cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEcc-CCCHHHHHHHh
Confidence            6889988888888888643322     122455565556555555433       2344456788888 899988886  


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEE---cCCCceEEeeeecceeccccCcc-----cccCCC
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTH-----ITSTGR  143 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~---~~~~~~kl~dfgl~~~~~~~~~~-----~~~~~~  143 (202)
                      ...+++..+..++.|++.||.|||+   .+++||||||+||++   +.++.+||+|||+++........     ......
T Consensus        99 ~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~  175 (296)
T 4hgt_A           99 SRKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNL  175 (296)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCccccc
Confidence            5679999999999999999999999   999999999999999   78899999999999876543221     122345


Q ss_pred             CCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .||+.|+|||.+.+..++.++||||+||++++|++|+.||.....
T Consensus       176 ~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  220 (296)
T 4hgt_A          176 TGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKA  220 (296)
T ss_dssp             CSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCC
T ss_pred             CCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccch
Confidence            689999999999999999999999999999999999999987544

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.97  E-value=7.5e-33  Score=223.59  Aligned_cols=183  Identities=21%  Similarity=0.268  Sum_probs=142.6

Q ss_pred             CCccc-----cCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-cccccccc-------cccceEEEEEccCCchh
Q 044746            1 MEKPR-----NRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVGS-------EDTETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~-------~~~~~~~~~~~~~~~l~   67 (202)
                      ||+++     +...++.||.|+.+.....  .....+..|....... +|+|++..       +....++++++++|+|.
T Consensus        38 Vy~~~~~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~~~~iv~e~~~~g~L~  115 (359)
T 3vhe_A           38 VIEADAFGIDKTATCRTVAVKMLKEGATH--SEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLS  115 (359)
T ss_dssp             EEEEEEESSSSTTCEEEEEEEEECTTCCH--HHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEEEECCTTEEHH
T ss_pred             EEEEEeccccccccceEEEEEEecCcCCH--HHHHHHHHHHHHHHhhcCCcceeeeeeeeecCCCceEEEEEecCCCcHH
Confidence            57776     5666778888775432111  1123455565555555 77877632       33366889999999998


Q ss_pred             hhhccCC-------------------------------------------------------------------CCHHHH
Q 044746           68 LLCKKNI-------------------------------------------------------------------LGFGQL   80 (202)
Q Consensus        68 ~~~~~~~-------------------------------------------------------------------~~~~~~   80 (202)
                      .++....                                                                   +++..+
T Consensus       116 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  195 (359)
T 3vhe_A          116 TYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHL  195 (359)
T ss_dssp             HHHHTTTTSBCSCC------------------------------------------------------CTTTTCBCHHHH
T ss_pred             HHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhcccccchhccccCHHHH
Confidence            8885432                                                                   899999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCC
Q 044746           81 REIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSV  160 (202)
Q Consensus        81 ~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~  160 (202)
                      ..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+++...............||+.|+|||++.+..+
T Consensus       196 ~~~~~ql~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  272 (359)
T 3vhe_A          196 ICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY  272 (359)
T ss_dssp             HHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHH---CCcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeEChhhhcCCCC
Confidence            9999999999999999   9999999999999999999999999999986644433333445567899999999988899


Q ss_pred             CchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          161 TQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       161 ~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      +.++||||+|++++||++ |+.||.....
T Consensus       273 ~~~~Di~slG~il~ellt~g~~p~~~~~~  301 (359)
T 3vhe_A          273 TIQSDVWSFGVLLWEIFSLGASPYPGVKI  301 (359)
T ss_dssp             CHHHHHHHHHHHHHHHTTTSCCSSTTCCC
T ss_pred             CchhhhhhHHHHHHHHHhcCCCCCCccch
Confidence            999999999999999998 9999976543

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.97  E-value=5e-32  Score=211.61  Aligned_cols=183  Identities=17%  Similarity=0.224  Sum_probs=130.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++...++.|+.|+.............++..|.......+|++++.      ..+...++++++++++|..++..  
T Consensus        27 Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  106 (278)
T 3cok_A           27 VYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRV  106 (278)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHHTCS
T ss_pred             EEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEEecCCCCcHHHHHhhcc
Confidence            6888888888888888765544333344456777777777888888763      34556788999999999988865  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++........  ......||+.|+||
T Consensus       107 ~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aP  181 (278)
T 3cok_A          107 KPFSENEARHFMHQIITGMLYLHS---HGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHE--KHYTLCGTPNYISP  181 (278)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHH---TTEECSSCCGGGEEECTTCCEEECCCTTCEECC--------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCC--cceeccCCCCcCCc
Confidence            469999999999999999999999   9999999999999999999999999999986543221  12234579999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |.+.+..++.++|+||+|+++++|++|+.||.....
T Consensus       182 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  217 (278)
T 3cok_A          182 EIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTV  217 (278)
T ss_dssp             ----------CTHHHHHHHHHHHHHHSSCSSCCCSC
T ss_pred             chhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhH
Confidence            999988899999999999999999999999986543

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.97  E-value=3.6e-32  Score=216.18  Aligned_cols=178  Identities=21%  Similarity=0.186  Sum_probs=133.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..+++.||.|+..............+..........+|++++.      .++...++++++ +++|..++..  
T Consensus        73 Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~  151 (311)
T 3p1a_A           73 VFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELC-GPSLQQHCEAWG  151 (311)
T ss_dssp             EEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHHC
T ss_pred             EEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEEecc-CCCHHHHHHhcC
Confidence            7899999888888888643322111111222333334444457887763      344456778888 5677666643  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||++........   .....||+.|+||
T Consensus       152 ~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aP  225 (311)
T 3p1a_A          152 ASLPEAQVWGYLRDTLLALAHLHS---QGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGA---GEVQEGDPRYMAP  225 (311)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECGGGCEEECCCTTCEECC---------CCCCCGGGCCG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEECCCCCEEEccceeeeecccCCC---CcccCCCccccCH
Confidence            459999999999999999999999   9999999999999999999999999999986543322   2334579999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      |++.+ .++.++||||+||+++||++|..|+...
T Consensus       226 E~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~  258 (311)
T 3p1a_A          226 ELLQG-SYGTAADVFSLGLTILEVACNMELPHGG  258 (311)
T ss_dssp             GGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH
T ss_pred             hHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence            99876 7899999999999999999997766543

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.97  E-value=4.4e-32  Score=222.06  Aligned_cols=179  Identities=18%  Similarity=0.253  Sum_probs=145.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++++..+++.+|.|+.......   ....+..|..+....+|+|++.      ......++++++++++|..++... 
T Consensus        67 Vy~~~~~~~~~~~a~K~~~~~~~~---~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~  143 (387)
T 1kob_A           67 VHRCVEKATGRVFVAKFINTPYPL---DKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAED  143 (387)
T ss_dssp             EEEEEETTTCCEEEEEEEECCSHH---HHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCTT
T ss_pred             EEEEEECCCCCEEEEEEecccchh---hHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcCCCCcHHHHHHhhc
Confidence            688999888888888765432211   1224566777777888998763      344567889999999999888654 


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC--CCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE--NFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~--~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                       .+++.++..++.|++.||.|||+   .+|+||||||+||+++.  .+.+||+|||+++........   ....||+.|+
T Consensus       144 ~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~---~~~~gt~~y~  217 (387)
T 1kob_A          144 YKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIV---KVTTATAEFA  217 (387)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCE---EEECSSGGGC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccchHHeEEecCCCCceEEEecccceecCCCcce---eeeccCCCcc
Confidence             68999999999999999999999   99999999999999974  578999999999876543222   2235799999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |||++.+..++.++||||+||++|||++|++||.+...
T Consensus       218 aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~  255 (387)
T 1kob_A          218 APEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD  255 (387)
T ss_dssp             CHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH
T ss_pred             CchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCH
Confidence            99999998999999999999999999999999986543

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.97  E-value=1.6e-31  Score=210.48  Aligned_cols=178  Identities=12%  Similarity=0.101  Sum_probs=138.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccc---cccc---ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFS---NLVG---SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~i~---~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.||.|+.....     ....+..|....... +|+   ++++   .+....++++++ +++|..++.. 
T Consensus        26 V~~~~~~~~~~~vavK~~~~~~-----~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~   99 (298)
T 1csn_A           26 IFEGTNLLNNQQVAIKFEPRRS-----DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLC   99 (298)
T ss_dssp             EEEEEETTTTEEEEEEEEECCT-----TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHT
T ss_pred             EEEEEECCCCcEEEEEEeccCC-----ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec-CCCHHHHHHHh
Confidence            6888888888888888653221     122344444444333 444   4443   344556888888 8999998864 


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCc-----eEEeeeecceeccccCcc-----cccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF-----PKAADFGLAKLYNREHTH-----ITST  141 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~-----~kl~dfgl~~~~~~~~~~-----~~~~  141 (202)
                       ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.     ++|+|||+++........     ....
T Consensus       100 ~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~  176 (298)
T 1csn_A          100 GRKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKK  176 (298)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccccccccCcc
Confidence             459999999999999999999999   99999999999999987765     999999999876543221     1234


Q ss_pred             CCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       142 ~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ...||+.|+|||.+.+..++.++||||+|++++||++|+.||....
T Consensus       177 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  222 (298)
T 1csn_A          177 NLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLK  222 (298)
T ss_dssp             CCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCC
T ss_pred             CCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhh
Confidence            4568999999999999899999999999999999999999998744

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.97  E-value=1e-32  Score=219.98  Aligned_cols=185  Identities=15%  Similarity=0.172  Sum_probs=131.7

Q ss_pred             CCccccCCCcc---eeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccccc------------ceEEEEEccCCc
Q 044746            1 MEKPRNRGSTR---FITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSEDT------------ETYIKGFLAMGP   65 (202)
Q Consensus         1 v~k~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------------~~~~~~~~~~~~   65 (202)
                      ||++++...+.   .||.|+.+.... ......++..|.......+|++++...+.            ..++++++.+++
T Consensus        39 Vy~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~  117 (323)
T 3qup_A           39 VREAQLKQEDGSFVKVAVKMLKADII-ASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGD  117 (323)
T ss_dssp             EEEEEC-------CEEEEEEC-------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-------CEEEEEECCTTCB
T ss_pred             EEEEEEcccCCcceeEEEEEeccccc-CHHHHHHHHHHHHHHHHCCCCceehhhceeeccccccCCCccEEEEEeccCCc
Confidence            67888776664   566665433211 11223456677777778889987642221            278899999999


Q ss_pred             hhhhhccC-------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc
Q 044746           66 FYLLCKKN-------ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI  138 (202)
Q Consensus        66 l~~~~~~~-------~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~  138 (202)
                      |..++...       .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++.........
T Consensus       118 L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~---~~ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~~~~~  194 (323)
T 3qup_A          118 LHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSS---RNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYR  194 (323)
T ss_dssp             HHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC-----------
T ss_pred             HHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHc---CCcccCCCCcceEEEcCCCCEEEeecccccccccccccc
Confidence            98887432       58999999999999999999999   999999999999999999999999999998665443333


Q ss_pred             ccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhcc
Q 044746          139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEISE  189 (202)
Q Consensus       139 ~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~~  189 (202)
                      ......+++.|+|||.+.+..++.++||||+||+++||++ |++||......
T Consensus       195 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~  246 (323)
T 3qup_A          195 QGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENA  246 (323)
T ss_dssp             ------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG
T ss_pred             ccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChH
Confidence            3344556889999999998889999999999999999999 99999865543

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.97  E-value=4.3e-32  Score=215.12  Aligned_cols=182  Identities=23%  Similarity=0.282  Sum_probs=138.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhc--cCCcccCCcHHHHHHh---ccccccccccc-----------cceEEEEEccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAME--MDKPIRFTSPQRMIAA---DNFSNLVGSED-----------TETYIKGFLAMG   64 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~i~~~~-----------~~~~~~~~~~~~   64 (202)
                      ||++++..+++.||.|+........  ......+..|......   .+|+|++...+           ...++++++. +
T Consensus        25 V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~  103 (308)
T 3g33_A           25 VYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVD-Q  103 (308)
T ss_dssp             EEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSSEEEEEEEEECCC-C
T ss_pred             EEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCCceeEEEEehhhh-c
Confidence            7899998889999888754332211  1112223334333333   34787763211           2356677776 5


Q ss_pred             chhhhhccCC---CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccC
Q 044746           65 PFYLLCKKNI---LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITST  141 (202)
Q Consensus        65 ~l~~~~~~~~---~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~  141 (202)
                      +|..++....   +++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++.......   ..
T Consensus       104 ~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~---~~  177 (308)
T 3g33_A          104 DLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHA---NCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMA---LT  177 (308)
T ss_dssp             BHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCTTTEEECTTSCEEECSCSCTTTSTTCCC---SG
T ss_pred             CHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCEEEeeCccccccCCCcc---cC
Confidence            8877775543   8999999999999999999999   9999999999999999999999999999976543222   23


Q ss_pred             CCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       142 ~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      ...||+.|+|||++.+..++.++||||+||+++||++|++||......
T Consensus       178 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~  225 (308)
T 3g33_A          178 PVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEA  225 (308)
T ss_dssp             GGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHH
T ss_pred             CccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            346799999999999889999999999999999999999999776543

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.97  E-value=5.4e-32  Score=215.84  Aligned_cols=180  Identities=17%  Similarity=0.199  Sum_probs=143.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc----------------------------
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED----------------------------   52 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------------------------   52 (202)
                      ||++++..+++.||.|+.+...  .......+..|.......+|+|++...+                            
T Consensus        22 V~~a~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (332)
T 3qd2_B           22 VFEAKNKVDDCNYAIKRIRLPN--RELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPL   99 (332)
T ss_dssp             EEEEEETTTCCEEEEEEEECCS--TTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHHHC------------
T ss_pred             EEEEEEcCCCcEEEEEEeecCC--chhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhhhhhhhccccccccc
Confidence            7899998888888888754322  1122345677777888889998875322                            


Q ss_pred             -----------------------------------cceEEEEEccCCchhhhhccC----CCCHHHHHHHHHHHHHHHHH
Q 044746           53 -----------------------------------TETYIKGFLAMGPFYLLCKKN----ILGFGQLREIEVSTSKGIAY   93 (202)
Q Consensus        53 -----------------------------------~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~i~~~l~~   93 (202)
                                                         +..++++++++++|..++...    ..++..+..++.|++.||.|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~  179 (332)
T 3qd2_B          100 SSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEF  179 (332)
T ss_dssp             --------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhHHHHHHHHHHHHHHHH
Confidence                                               256889999999999988654    35667799999999999999


Q ss_pred             HHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc----------cccCCCCCCCcccCCcccCCCCCCch
Q 044746           94 LHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH----------ITSTGRRRTPGCEAPELWMPYSVTQK  163 (202)
Q Consensus        94 lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~----------~~~~~~~gt~~y~aPe~~~~~~~~~~  163 (202)
                      ||+   .+++||||||+||+++.++.+||+|||+++........          .......||+.|+|||++.+..++.+
T Consensus       180 LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  256 (332)
T 3qd2_B          180 LHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHK  256 (332)
T ss_dssp             HHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTH
T ss_pred             HHh---CCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCccChHHhcCCCCcch
Confidence            999   99999999999999999999999999999876543211          12234568999999999999899999


Q ss_pred             hhHHHHHHHHHHHHcCCCCCcc
Q 044746          164 CDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       164 ~Diws~G~~l~el~~g~~p~~~  185 (202)
                      +||||+|++++||++|..|+..
T Consensus       257 ~Di~slG~il~el~~~~~~~~~  278 (332)
T 3qd2_B          257 VDIFSLGLILFELLYSFSTQME  278 (332)
T ss_dssp             HHHHHHHHHHHHHHSCCCCHHH
T ss_pred             hhHHHHHHHHHHHHHcCCChhH
Confidence            9999999999999999888754

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.97  E-value=9.8e-32  Score=214.51  Aligned_cols=180  Identities=28%  Similarity=0.457  Sum_probs=141.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||+++... ++.||.|+......  ......+..|.......+|++++.      ..+...++++++++++|..++... 
T Consensus        46 V~~~~~~~-~~~vavK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  122 (326)
T 3uim_A           46 VYKGRLAD-GTLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERP  122 (326)
T ss_dssp             EEEECCSS-SCCEEEEECCC-------CCCHHHHHHHGGGTCCCTTBCCCCEEECCSSCCEEEEECCTTCBHHHHHHCCS
T ss_pred             EEEEEecC-CCEEEEEEeccccC--chHHHHHHHHHHHHHhccCCCccceEEEEecCCceEEEEEeccCCCHHHHHHhcc
Confidence            67887665 45555554333221  122334667777777788898763      344556899999999999888543 


Q ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHhCCCC---CeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCC
Q 044746           74 ----ILGFGQLREIEVSTSKGIAYLHEECRQ---KIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT  146 (202)
Q Consensus        74 ----~~~~~~~~~~~~~i~~~l~~lH~~~~~---~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt  146 (202)
                          .+++..+..++.|++.||.|||+   .   +++||||||+||+++.++.++|+|||+++........ ......||
T Consensus       123 ~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~~gt  198 (326)
T 3uim_A          123 ESQPPLDWPKRQRIALGSARGLAYLHD---HCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTH-VTTAVRGT  198 (326)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHHHHHHH---SSSSCEECCCCSGGGEEECTTCCEEECCCSSCEECCSSSSC-EECCCCSC
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHh---CCCCCeEeCCCchhhEEECCCCCEEeccCccccccCccccc-ccccccCC
Confidence                39999999999999999999999   7   9999999999999999999999999999876433322 22345589


Q ss_pred             CcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       147 ~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +.|+|||++.+..++.++||||+|+++++|++|+.||....
T Consensus       199 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  239 (326)
T 3uim_A          199 IGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLAR  239 (326)
T ss_dssp             GGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHH
T ss_pred             cCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccc
Confidence            99999999988889999999999999999999999997443

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.97  E-value=1.1e-31  Score=213.46  Aligned_cols=181  Identities=20%  Similarity=0.261  Sum_probs=137.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++.. ++.||.|+.+... ........+..|.......+|++++.      ......++++++++ ++...+..  
T Consensus        37 V~~~~~~~-~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~  113 (311)
T 3niz_A           37 VYKAKDSQ-GRIVALKRIRLDA-EDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEFMEK-DLKKVLDENK  113 (311)
T ss_dssp             EEEEEETT-SCEEEEEEEC-------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEECCSE-EHHHHHHTCT
T ss_pred             EEEEEECC-CCEEEEEEEeccc-ccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEcCCCC-CHHHHHHhcc
Confidence            68888865 5556655443221 11222344666777788888998763      34455688888885 56555543  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+++.......  ......||+.|+||
T Consensus       114 ~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y~aP  188 (311)
T 3niz_A          114 TGLQDSQIKIYLYQLLRGVAHCHQ---HRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVR--SYTHEVVTLWYRAP  188 (311)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC-----CCCCCCTTCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCchHhEEECCCCCEEEccCcCceecCCCcc--cccCCcccCCcCCH
Confidence            349999999999999999999999   9999999999999999999999999999987643322  12335679999999


Q ss_pred             cccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          153 ELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       153 e~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |++.+ ..++.++||||+||++++|++|++||......
T Consensus       189 E~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~  226 (311)
T 3niz_A          189 DVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDD  226 (311)
T ss_dssp             HHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTT
T ss_pred             HHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChH
Confidence            99876 56899999999999999999999999865544

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.97  E-value=3.8e-32  Score=226.63  Aligned_cols=173  Identities=21%  Similarity=0.257  Sum_probs=129.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc-----------ccceEEEEEccCCchhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE-----------DTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++++..+++.||.|+...... ......++..|..++...+|+|++...           ...+++++++ +++|..+
T Consensus        69 V~~~~~~~~~~~vaiK~i~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~  146 (458)
T 3rp9_A           69 VCEAYDKLEKRVVAIKKILRVFE-DLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDELYVVLEIA-DSDFKKL  146 (458)
T ss_dssp             EEEEEECC--CEEEEEEECSTTS-SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEECCC-SEEHHHH
T ss_pred             EEEEEECCCCcEEEEEEechhhc-CHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceEEEEEecc-ccchhhh
Confidence            68899988888888875432211 112234566788888888999887422           2345667765 5677777


Q ss_pred             hccC-CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc-----------
Q 044746           70 CKKN-ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-----------  137 (202)
Q Consensus        70 ~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~-----------  137 (202)
                      +... .+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+++........           
T Consensus       147 ~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~  223 (458)
T 3rp9_A          147 FRTPVYLTELHIKTLLYNLLVGVKYVHS---AGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPRED  223 (458)
T ss_dssp             HHSSCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC------
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHh---CCcCCCCCChhhEEECCCCCEeecccccchhccCccccccccccCcccc
Confidence            7554 59999999999999999999999   99999999999999999999999999999865422110           


Q ss_pred             --------------cccCCCCCCCcccCCccc-CCCCCCchhhHHHHHHHHHHHHc
Q 044746          138 --------------ITSTGRRRTPGCEAPELW-MPYSVTQKCDVFSFGMLLFEVVG  178 (202)
Q Consensus       138 --------------~~~~~~~gt~~y~aPe~~-~~~~~~~~~Diws~G~~l~el~~  178 (202)
                                    .......||+.|+|||++ ....++.++||||+||++|||++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~ellt  279 (458)
T 3rp9_A          224 DMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLN  279 (458)
T ss_dssp             ---------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHH
Confidence                          122445789999999976 45679999999999999999999

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.97  E-value=4.4e-32  Score=213.93  Aligned_cols=177  Identities=22%  Similarity=0.287  Sum_probs=135.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHh--cccccccccc----------ccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAA--DNFSNLVGSE----------DTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~----------~~~~~~~~~~~~~~l~~   68 (202)
                      ||++++  .++.||.|+......      ..+..+......  .+|+|++...          ....++++++++|+|..
T Consensus        24 V~~~~~--~~~~vavK~~~~~~~------~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~   95 (301)
T 3q4u_A           24 VWRGSW--QGENVAVKIFSSRDE------KSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYD   95 (301)
T ss_dssp             EEEEEE--TTEEEEEEEECGGGH------HHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEECCCTTCBHHH
T ss_pred             EEEEEE--CCEEEEEEEeccccc------hhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEehhhccCCCHHH
Confidence            577766  355666665433211      122223333333  6788876432          23468889999999999


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHH--------hCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc--
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLH--------EECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI--  138 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH--------~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~--  138 (202)
                      +++...+++..+..++.|++.||.|||        +   .+++||||||+||+++.++.+||+|||+++.........  
T Consensus        96 ~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~---~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  172 (301)
T 3q4u_A           96 YLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGK---PAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDV  172 (301)
T ss_dssp             HHTTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCB---CEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEEEC
T ss_pred             HHhhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCC---CCeecCCCChHhEEEcCCCCEEEeeCCCeeecccccccccc
Confidence            999899999999999999999999999        7   899999999999999999999999999998654432221  


Q ss_pred             ccCCCCCCCcccCCcccCCC------CCCchhhHHHHHHHHHHHHcC----------CCCCcchhc
Q 044746          139 TSTGRRRTPGCEAPELWMPY------SVTQKCDVFSFGMLLFEVVGR----------RRNLEKEIS  188 (202)
Q Consensus       139 ~~~~~~gt~~y~aPe~~~~~------~~~~~~Diws~G~~l~el~~g----------~~p~~~~~~  188 (202)
                      ......||+.|+|||++.+.      .++.++||||+|+++|||++|          ++||....+
T Consensus       173 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~  238 (301)
T 3q4u_A          173 GNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVP  238 (301)
T ss_dssp             CCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSC
T ss_pred             cccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCC
Confidence            12334689999999999876      445789999999999999999          888865443

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.97  E-value=7.2e-33  Score=225.16  Aligned_cols=184  Identities=21%  Similarity=0.232  Sum_probs=140.8

Q ss_pred             CCccc-----cCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhh
Q 044746            1 MEKPR-----NRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||+++     +...+..||+|+.+...  .......+..|..+....+|+|++.      ......++++++++|+|..+
T Consensus        87 Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~  164 (367)
T 3l9p_A           87 VYEGQVSGMPNDPSPLQVAVKTLPEVC--SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSF  164 (367)
T ss_dssp             EEEEEECC-----CCEEEEEEECCSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHH
T ss_pred             EEEEEEccCCCCCcceeEEEEeccccc--ChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCEEEEEeCCCCCHHHH
Confidence            56666     44556677777643221  1112234666777777888998774      34455789999999999988


Q ss_pred             hcc--------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC---ceEEeeeecceeccccCccc
Q 044746           70 CKK--------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF---FPKAADFGLAKLYNREHTHI  138 (202)
Q Consensus        70 ~~~--------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~---~~kl~dfgl~~~~~~~~~~~  138 (202)
                      +..        ..+++.++..++.|++.||.|||+   ++|+||||||+|||++.++   .+||+|||+++.........
T Consensus       165 l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~  241 (367)
T 3l9p_A          165 LRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYR  241 (367)
T ss_dssp             HHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCT
T ss_pred             HHhhccccCccccccHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChhhEEEecCCCCceEEECCCccccccccccccc
Confidence            854        349999999999999999999999   9999999999999998554   59999999998654333222


Q ss_pred             ccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhcc
Q 044746          139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEISE  189 (202)
Q Consensus       139 ~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~~  189 (202)
                      ......||+.|+|||++.+..++.++|||||||+++||++ |+.||......
T Consensus       242 ~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~  293 (367)
T 3l9p_A          242 KGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ  293 (367)
T ss_dssp             TCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH
T ss_pred             cCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence            3334557899999999988899999999999999999998 99999865543

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.6e-32  Score=219.81  Aligned_cols=186  Identities=19%  Similarity=0.252  Sum_probs=138.3

Q ss_pred             CCccccCCCcceeehhhhchh--hhhccCCcccCCcHHHHHHhccccccccc-----cccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSL--DAMEMDKPIRFTSPQRMIAADNFSNLVGS-----EDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++...++.++.++..+.  ..........+..|.......+|++++..     .+...++++++.+++|..++.. 
T Consensus        31 Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~v~~~~~~g~L~~~l~~~  110 (327)
T 3lzb_A           31 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREH  110 (327)
T ss_dssp             EEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSSEEEEECCCSSCBHHHHHHHT
T ss_pred             EEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCCceEEEEecCCCcHHHHHHhc
Confidence            688888777776654432111  11222334456677778888899988742     2335678889999999988854 


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++...............+|+.|+|
T Consensus       111 ~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~a  187 (327)
T 3lzb_A          111 KDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMA  187 (327)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCTTC----------------CCCGGGSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhh---CCCcCCCCCHHHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccC
Confidence             469999999999999999999999   9999999999999999999999999999987654433333344556889999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhcc
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEISE  189 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~~  189 (202)
                      ||.+.+..++.++||||+|+++|||++ |+.||......
T Consensus       188 PE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~  226 (327)
T 3lzb_A          188 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS  226 (327)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG
T ss_pred             HHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Confidence            999998899999999999999999999 99999875543

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.97  E-value=3.7e-32  Score=216.16  Aligned_cols=180  Identities=23%  Similarity=0.361  Sum_probs=134.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++++.  +..||.|+...... ..+...++..|.......+|++++.      ..+...++++++++++|..++....
T Consensus        53 V~~~~~~--~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  129 (309)
T 3p86_A           53 VHRAEWH--GSDVAVKILMEQDF-HAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSG  129 (309)
T ss_dssp             EEEEEET--TEEEEEEEECCCCC-SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEECCTTCBHHHHHHSTT
T ss_pred             EEEEEEC--CCcEEEEEecCCCC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEecCCCCcHHHHHhhcC
Confidence            5777653  44466555432211 1122334667777788888998763      3445679999999999999887654


Q ss_pred             ----CCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           75 ----LGFGQLREIEVSTSKGIAYLHEECRQK--IVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        75 ----~~~~~~~~~~~~i~~~l~~lH~~~~~~--iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                          +++..+..++.|++.||.|||+   .+  ++||||||+||+++.++.+||+|||+++.......  ......||+.
T Consensus       130 ~~~~~~~~~~~~i~~qi~~aL~~LH~---~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~--~~~~~~gt~~  204 (309)
T 3p86_A          130 AREQLDERRRLSMAYDVAKGMNYLHN---RNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFL--SSKSAAGTPE  204 (309)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHT---SSSCCCCTTCCGGGEEECTTCCEEECCCC-------------------CCT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHc---CCCCEECCCCChhhEEEeCCCcEEECCCCCCcccccccc--ccccCCCCcc
Confidence                9999999999999999999999   88  99999999999999999999999999975433221  1234567999


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |+|||++.+..++.++||||+|+++|||++|+.||....+
T Consensus       205 y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~  244 (309)
T 3p86_A          205 WMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNP  244 (309)
T ss_dssp             TSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCH
T ss_pred             ccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            9999999999999999999999999999999999986554

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.97  E-value=9.2e-32  Score=215.27  Aligned_cols=177  Identities=19%  Similarity=0.248  Sum_probs=122.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.||.|+......      ..+..|....... +|+|++.      ......++++++++++|..++.. 
T Consensus        27 V~~~~~~~~~~~vavK~~~~~~~------~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  100 (325)
T 3kn6_A           27 CRKCVHKKSNQAFAVKIISKRME------ANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKK  100 (325)
T ss_dssp             EEEEEETTTCCEEEEEEEEGGGH------HHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHC
T ss_pred             EEEEEECCCCCEEEEEEEChhhh------hhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcHHHHHHhc
Confidence            68899988888888887543211      1233444444444 4887763      34456688999999999888755 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC---ceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF---FPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~---~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                      ..+++.++..++.|++.||.|||+   .+|+||||||+||+++.++   .++|+|||+++.......  ......||+.|
T Consensus       101 ~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y  175 (325)
T 3kn6_A          101 KHFSETEASYIMRKLVSAVSHMHD---VGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQ--PLKTPCFTLHY  175 (325)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC----------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCC--cccccCCCcCc
Confidence            459999999999999999999999   9999999999999997665   899999999986543322  12345679999


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +|||++.+..++.++||||+|+++++|++|+.||.....
T Consensus       176 ~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~  214 (325)
T 3kn6_A          176 AAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDR  214 (325)
T ss_dssp             --------CCCCHHHHHHHHHHHHHHHHHSSCTTC----
T ss_pred             cCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCcc
Confidence            999999999999999999999999999999999986543

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.97  E-value=7.4e-32  Score=212.25  Aligned_cols=179  Identities=19%  Similarity=0.239  Sum_probs=140.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||++++..+++.||.|+.+.... .......+..|.......+|++++.      ..+...+++++++++.+..+.. ..
T Consensus        18 V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~   96 (292)
T 3o0g_A           18 VFKAKNRETHEIVALKRVRLDDD-DEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNG   96 (292)
T ss_dssp             EEEEEETTTCCEEEEEEEESSCS-STTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHTTT
T ss_pred             EEEEEECCCCceEEEEeeeccCC-cCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEecCCCCHHHHHHhCCC
Confidence            68999998888888887543321 1122234556777777788898764      3444568888888655444443 45


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++.......  ......||+.|+|||
T Consensus        97 ~l~~~~~~~~~~ql~~~l~~lH~---~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~t~~y~aPE  171 (292)
T 3o0g_A           97 DLDPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVR--CYSAEVVTLWYRPPD  171 (292)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCS--CCCSCCSCGGGCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeecccceecCCccc--cccCCccccCCcChH
Confidence            79999999999999999999999   9999999999999999999999999999987643322  223456799999999


Q ss_pred             ccCCCC-CCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          154 LWMPYS-VTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       154 ~~~~~~-~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      ++.+.. ++.++||||+||+++||++|..||..
T Consensus       172 ~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~  204 (292)
T 3o0g_A          172 VLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP  204 (292)
T ss_dssp             HHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCC
T ss_pred             HHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcC
Confidence            998765 79999999999999999998887643

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.97  E-value=8.6e-32  Score=217.67  Aligned_cols=175  Identities=19%  Similarity=0.238  Sum_probs=137.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-----ccccccc------ccccceEEEEEccCCchhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-----NFSNLVG------SEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~------~~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++++..+++.||.|+.+......    ..+..|..+....     +|++++.      ..+...++++++ +++|..+
T Consensus        51 V~~~~~~~~~~~vavK~~~~~~~~~----~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~-~~~L~~~  125 (360)
T 3llt_A           51 VLLCQHIDNKKYYAVKVVRNIKKYT----RSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMCLIFEPL-GPSLYEI  125 (360)
T ss_dssp             EEEEEETTTCCEEEEEEECSCHHHH----HHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTEEEEEECCC-CCBHHHH
T ss_pred             EEEEEECCCCeEEEEEEeccchhhh----hhhHHHHHHHHHhcccCCCCCCeecccceeeECCeeEEEEcCC-CCCHHHH
Confidence            6899998888999988764322111    1223344444333     3777763      334455778888 8899888


Q ss_pred             hccC---CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC-------------------------CCceE
Q 044746           70 CKKN---ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE-------------------------NFFPK  121 (202)
Q Consensus        70 ~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~-------------------------~~~~k  121 (202)
                      +...   .+++..+..++.|++.||.|||+   .+|+||||||+|||++.                         ++.+|
T Consensus       126 ~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  202 (360)
T 3llt_A          126 ITRNNYNGFHIEDIKLYCIEILKALNYLRK---MSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIK  202 (360)
T ss_dssp             HHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEE
T ss_pred             HHhcCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEE
Confidence            8654   39999999999999999999999   99999999999999975                         78899


Q ss_pred             EeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          122 AADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       122 l~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |+|||+++.....     .....||+.|+|||++.+..++.++||||+||++++|++|+.||.....
T Consensus       203 l~DFG~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~  264 (360)
T 3llt_A          203 LIDFGCATFKSDY-----HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEH  264 (360)
T ss_dssp             ECCCTTCEETTSC-----CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             EEeccCceecCCC-----CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCCcH
Confidence            9999999864432     2335679999999999999999999999999999999999999976543

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.97  E-value=4.2e-32  Score=221.18  Aligned_cols=179  Identities=19%  Similarity=0.211  Sum_probs=146.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..+++.||.|+.+.....   ....+..|.......+|+|++.      ..+...++++++++++|..++..  
T Consensus       105 Vy~a~~~~~g~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~  181 (373)
T 2x4f_A          105 VHKCEETATGLKLAAKIIKTRGMK---DKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDES  181 (373)
T ss_dssp             EEEEEETTTCCEEEEEEEECCSHH---HHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEEHHHHHHTG
T ss_pred             EEEEEEcCCCcEEEEEEEcccccc---cHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHhcC
Confidence            688888888888888875443211   2235667777788888998763      34456789999999999877743  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEE--cCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL--DENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~--~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      ..+++..+..++.|++.||.|||+   .+|+||||||+||++  +.++.+||+|||+++.......   .....||+.|+
T Consensus       182 ~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~  255 (373)
T 2x4f_A          182 YNLTELDTILFMKQICEGIRHMHQ---MYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK---LKVNFGTPEFL  255 (373)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB---CCCCCSSCTTC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc---cccccCCCcEe
Confidence            359999999999999999999999   999999999999999  5678999999999987644322   23346899999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |||++.+..++.++||||+||+++||++|+.||.....
T Consensus       256 aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~  293 (373)
T 2x4f_A          256 APEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDND  293 (373)
T ss_dssp             CHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSH
T ss_pred             ChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            99999988899999999999999999999999976544

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.97  E-value=1.1e-32  Score=224.22  Aligned_cols=179  Identities=8%  Similarity=-0.009  Sum_probs=130.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHH---HHHHhcccccccc-cc-------------------------
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQ---RMIAADNFSNLVG-SE-------------------------   51 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~-~~-------------------------   51 (202)
                      ||++++..+++.||.|+..............+..|.   ..+.. +|++++. ..                         
T Consensus        78 V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~~~~~~~~~~~~~~~~~  156 (371)
T 3q60_A           78 VFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQD  156 (371)
T ss_dssp             EEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEEEEETTSCSSSBCSCC--
T ss_pred             EEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehheecCCCCCeeeccCCcc
Confidence            688998888888888876554322222233344442   23333 6887553 11                         


Q ss_pred             ----ccceEEEEEccCCchhhhhccC--CCCHHHH------HHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCc
Q 044746           52 ----DTETYIKGFLAMGPFYLLCKKN--ILGFGQL------REIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF  119 (202)
Q Consensus        52 ----~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~------~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~  119 (202)
                          ...++++++++ ++|..++...  .+++..+      ..++.|++.||.|||+   ++|+||||||+|||++.++.
T Consensus       157 ~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~---~~ivHrDikp~NIll~~~~~  232 (371)
T 3q60_A          157 DYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQS---KGLVHGHFTPDNLFIMPDGR  232 (371)
T ss_dssp             -CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHH---TTEEETTCSGGGEEECTTSC
T ss_pred             cceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHH---CCCccCcCCHHHEEECCCCC
Confidence                22467788888 8998888642  4555555      6778999999999999   99999999999999999999


Q ss_pred             eEEeeeecceeccccCcccccCCCCCCCcccCCcccCC--CCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          120 PKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMP--YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       120 ~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~--~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      +||+|||+++.......     ...+|+.|+|||++.+  ..++.++||||+||++|||++|+.||....+.
T Consensus       233 ~kL~DFG~a~~~~~~~~-----~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~  299 (371)
T 3q60_A          233 LMLGDVSALWKVGTRGP-----ASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPG  299 (371)
T ss_dssp             EEECCGGGEEETTCEEE-----GGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTT
T ss_pred             EEEEecceeeecCCCcc-----CccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCcc
Confidence            99999999986543211     2345799999999987  67999999999999999999999999887543

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.97  E-value=8e-32  Score=217.61  Aligned_cols=177  Identities=19%  Similarity=0.268  Sum_probs=132.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.||.|+.+...     ....+..|.......+|++++.      ......++++++++++|..++.. .
T Consensus        69 Vy~~~~~~~~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  143 (349)
T 2w4o_A           69 VYRCKQKGTQKPYALKVLKKTV-----DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIVEKG  143 (349)
T ss_dssp             EEEEEETTTCCEEEEEEEEC---------------CHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTTCS
T ss_pred             EEEEEECCCCcEEEEEEeccch-----hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEeCCCCCHHHHHHhcC
Confidence            6889998888888888765432     2234666777777788898763      33445688999999999887754 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC---CCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~---~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      .+++.++..++.|++.||.|||+   .+++||||||+||+++.   ++.+||+|||+++.......   .....||+.|+
T Consensus       144 ~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~  217 (349)
T 2w4o_A          144 YYSERDAADAVKQILEAVAYLHE---NGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVL---MKTVCGTPGYC  217 (349)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESSSSTTCCEEECCCC-------------------CGGGS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCcccEEEecCCCCCCEEEccCccccccCcccc---cccccCCCCcc
Confidence            58999999999999999999999   99999999999999975   88999999999986543221   23356799999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |||++.+..++.++||||+||++|||++|+.||.....
T Consensus       218 aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~  255 (349)
T 2w4o_A          218 APEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERG  255 (349)
T ss_dssp             CHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTC
T ss_pred             CHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcc
Confidence            99999998999999999999999999999999976543

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=5.2e-32  Score=217.62  Aligned_cols=183  Identities=21%  Similarity=0.266  Sum_probs=142.0

Q ss_pred             CCcccc-----CCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhh
Q 044746            1 MEKPRN-----RGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~   68 (202)
                      ||++++     ...+..||.|+.....  .......+..|....... +|++++.      ..+...++++++++++|..
T Consensus        61 V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~  138 (344)
T 1rjb_A           61 VMNATAYGISKTGVSIQVAVKMLKEKA--DSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLN  138 (344)
T ss_dssp             EEEEEEESCSSSSCEEEEEEEEECC--------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHH
T ss_pred             eEEeeeeccccCCcceEEEEEeccccc--CHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCccEEEEecCCCCcHHH
Confidence            466664     3455567777654321  222344566777766666 8888763      3455678999999999998


Q ss_pred             hhccC------------------------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEee
Q 044746           69 LCKKN------------------------ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAAD  124 (202)
Q Consensus        69 ~~~~~------------------------~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~d  124 (202)
                      ++...                        .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|
T Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kL~D  215 (344)
T 1rjb_A          139 YLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---KSCVHRDLAARNVLVTHGKVVKICD  215 (344)
T ss_dssp             HHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH---TTEEETTCSGGGEEEETTTEEEECC
T ss_pred             HHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChhhEEEcCCCcEEeCC
Confidence            88543                        37999999999999999999999   9999999999999999999999999


Q ss_pred             eecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          125 FGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       125 fgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ||++................||+.|+|||.+.+..++.++||||||++++||++ |+.||.....
T Consensus       216 fg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~  280 (344)
T 1rjb_A          216 FGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV  280 (344)
T ss_dssp             CGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC
T ss_pred             CccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCc
Confidence            999986654433333344556889999999988889999999999999999998 9999977543

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.97  E-value=1e-31  Score=222.79  Aligned_cols=182  Identities=19%  Similarity=0.232  Sum_probs=138.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc-----------ccceEEEEEccCCchhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE-----------DTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++++..+++.||.|+.+.... ......++..|..++...+|++++...           ...+++++++. ++|..+
T Consensus        42 V~~a~~~~~~~~vAiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~  119 (432)
T 3n9x_A           42 VYLAYDKNTEKNVAIKKVNRMFE-DLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIAD-SDLKKL  119 (432)
T ss_dssp             EEEEEETTTTEEEEEEEECSTTT-SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEEECCS-EEHHHH
T ss_pred             EEEEEECCCCcEEEEEEeCchhc-ChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeEEEEEecCC-cCHHHH
Confidence            78999988888888876543211 112234566777788888899877421           33567788765 588887


Q ss_pred             hccC-CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc-----------
Q 044746           70 CKKN-ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-----------  137 (202)
Q Consensus        70 ~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~-----------  137 (202)
                      +... .+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+++........           
T Consensus       120 ~~~~~~l~~~~~~~i~~qil~aL~~LH~---~givHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~  196 (432)
T 3n9x_A          120 FKTPIFLTEEHIKTILYNLLLGENFIHE---SGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEE  196 (432)
T ss_dssp             HHSSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEEC-----------------
T ss_pred             HhccCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHeEECCCCCEEEccCCCccccccccccccccccccccc
Confidence            7654 59999999999999999999999   99999999999999999999999999999876433211           


Q ss_pred             ---------cccCCCCCCCcccCCccc-CCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          138 ---------ITSTGRRRTPGCEAPELW-MPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       138 ---------~~~~~~~gt~~y~aPe~~-~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                               .......||+.|+|||++ ....++.++||||+||+++||++|..||....
T Consensus       197 ~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~  256 (432)
T 3n9x_A          197 PGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDP  256 (432)
T ss_dssp             --------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSSG
T ss_pred             ccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccccccc
Confidence                     112456789999999986 45679999999999999999999766665443

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.97  E-value=6.3e-32  Score=218.16  Aligned_cols=175  Identities=13%  Similarity=0.141  Sum_probs=138.3

Q ss_pred             CCccccCC--------CcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc----------------------c
Q 044746            1 MEKPRNRG--------STRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG----------------------S   50 (202)
Q Consensus         1 v~k~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----------------------~   50 (202)
                      ||++++..        .++.||.|+....        ..+..|.......+|+|++.                      .
T Consensus        58 Vy~~~~~~t~~~~~~~~~~~vavK~~~~~--------~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~~~~~~~~~  129 (352)
T 2jii_A           58 LYEAAPTSTLTCDSGPQKQKFSLKLDAKD--------GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMGFGVHQ  129 (352)
T ss_dssp             EEEEEECC-----------CEEEEEEETT--------STHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCCCCEEEEET
T ss_pred             EEEEeecCCccccccccCceEEEEEeccc--------chHHHHHHHHHHhcccchhhhhhhhccCCccCccchhhccccC
Confidence            67777776        4677777765432        24555555666666666553                      2


Q ss_pred             cccceEEEEEccCCchhhhhcc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC--ceEEeee
Q 044746           51 EDTETYIKGFLAMGPFYLLCKK---NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF--FPKAADF  125 (202)
Q Consensus        51 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~--~~kl~df  125 (202)
                      .....++++++ +++|..++..   ..+++.++..++.|++.||.|||+   .+++||||||+||+++.++  .++|+||
T Consensus       130 ~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dikp~NIl~~~~~~~~~kl~Df  205 (352)
T 2jii_A          130 DKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHE---NEYVHGNVTAENIFVDPEDQSQVTLAGY  205 (352)
T ss_dssp             TTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCGGGEEEETTEEEEEEECCG
T ss_pred             CcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCHHHEEEcCCCCceEEEecC
Confidence            45567888888 9999998865   579999999999999999999999   9999999999999999988  8999999


Q ss_pred             ecceeccccCccc-----ccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          126 GLAKLYNREHTHI-----TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       126 gl~~~~~~~~~~~-----~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |+++.........     ......||+.|+|||++.+..++.++||||||+++|||++|+.||....
T Consensus       206 g~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  272 (352)
T 2jii_A          206 GFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCL  272 (352)
T ss_dssp             GGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGT
T ss_pred             cceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCC
Confidence            9998654332111     1233478999999999999899999999999999999999999998765

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.97  E-value=1.8e-32  Score=219.96  Aligned_cols=183  Identities=21%  Similarity=0.278  Sum_probs=144.6

Q ss_pred             CCccccCC-----CcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhh
Q 044746            1 MEKPRNRG-----STRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++++.+     .++.||.|+.+...  ..+....+..|.......+|++++.      ..+...++++++++++|..+
T Consensus        63 Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~  140 (343)
T 1luf_A           63 VFQARAPGLLPYEPFTMVAVKMLKEEA--SADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEF  140 (343)
T ss_dssp             EEEEEEETSSTTSSEEEEEEEECCTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHH
T ss_pred             EEEEEecCcCCCCCceeEEEEEecccc--CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCceEEEEecCCCCcHHHH
Confidence            57777653     34677777654321  1122345777777888888998763      34556789999999999988


Q ss_pred             hcc-------------------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEee
Q 044746           70 CKK-------------------------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAAD  124 (202)
Q Consensus        70 ~~~-------------------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~d  124 (202)
                      +..                         ..+++.++..++.|++.||.|||+   .+++||||||+||+++.++.+||+|
T Consensus       141 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~kl~D  217 (343)
T 1luf_A          141 LRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---RKFVHRDLATRNCLVGENMVVKIAD  217 (343)
T ss_dssp             HHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECC
T ss_pred             HHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCcceEEECCCCeEEEee
Confidence            854                         569999999999999999999999   9999999999999999999999999


Q ss_pred             eecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          125 FGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       125 fgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ||+++...............+|+.|+|||.+.+..++.++|+||+|+++|||++ |+.||.+...
T Consensus       218 fg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~  282 (343)
T 1luf_A          218 FGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAH  282 (343)
T ss_dssp             CSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH
T ss_pred             cCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCCh
Confidence            999986543332222334567889999999988889999999999999999999 9999976544

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.97  E-value=5.7e-32  Score=218.50  Aligned_cols=177  Identities=22%  Similarity=0.255  Sum_probs=142.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh--cc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC--KK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~--~~   72 (202)
                      ||++++..+++.||.|+.........+....+..|.......+|+|++.      ..+...++++++. |++..++  ..
T Consensus        70 Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~-g~l~~~l~~~~  148 (348)
T 1u5q_A           70 VYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCL-GSASDLLEVHK  148 (348)
T ss_dssp             EEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHHHT
T ss_pred             EEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEEecCC-CCHHHHHHHhc
Confidence            6889988888888887654332222223345667777788889998874      3344568888887 5666555  34


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||++......      ....||+.|+||
T Consensus       149 ~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~------~~~~gt~~y~aP  219 (348)
T 1u5q_A          149 KPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA------NSFVGTPYWMAP  219 (348)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB------CCCCSCGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC------CcccCCcceeCH
Confidence            679999999999999999999999   99999999999999999999999999999765322      234679999999


Q ss_pred             cccC---CCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWM---PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~---~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |++.   ...++.++|||||||+++||++|++||....
T Consensus       220 E~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~  257 (348)
T 1u5q_A          220 EVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  257 (348)
T ss_dssp             HHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred             hhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            9984   5678999999999999999999999997654

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.97  E-value=1.6e-31  Score=208.25  Aligned_cols=183  Identities=22%  Similarity=0.256  Sum_probs=146.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++++..+++.|+.|+......  ......+..|.......+|++++.      .++...++++++++++|..++... 
T Consensus        23 V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  100 (276)
T 2yex_A           23 VQLAVNRVTEEAVAVKIVDMKRA--VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI  100 (276)
T ss_dssp             EEEEEETTTCCEEEEEEEEGGGC--TTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSBTTT
T ss_pred             EEEEEECCCCcEEEEEEeeeccc--hhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEEecCCCcHHHHHhhcc
Confidence            68888888888888877543221  122345666777777788888763      334556889999999999888654 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++................|++.|+|||
T Consensus       101 ~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  177 (276)
T 2yex_A          101 GMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPE  177 (276)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGG
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccChH
Confidence            69999999999999999999999   999999999999999999999999999998654333222234456899999999


Q ss_pred             ccCCCCC-CchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSV-TQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~-~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .+.+..+ +.++|+||+|+++++|++|+.||.....
T Consensus       178 ~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  213 (276)
T 2yex_A          178 LLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSD  213 (276)
T ss_dssp             GGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCT
T ss_pred             HHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCch
Confidence            9987665 6789999999999999999999976543

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.97  E-value=6.9e-32  Score=220.35  Aligned_cols=183  Identities=21%  Similarity=0.243  Sum_probs=141.5

Q ss_pred             CCccccC-------CCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCch
Q 044746            1 MEKPRNR-------GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPF   66 (202)
Q Consensus         1 v~k~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l   66 (202)
                      ||++++.       .....||+|+.+...  ......++..|....... +|++++.      ..+...++++++++++|
T Consensus        85 Vy~a~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L  162 (382)
T 3tt0_A           85 VVLAEAIGLDKDKPNRVTKVAVKMLKSDA--TEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNL  162 (382)
T ss_dssp             EEEEEEETSSTTCTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBH
T ss_pred             EEEEEEccccccccccceEEEEEeecccc--CHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCCceEEEEEecCCCcH
Confidence            5666643       233456666543321  111223455666556555 8888763      44556799999999999


Q ss_pred             hhhhccC-----------------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecce
Q 044746           67 YLLCKKN-----------------ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK  129 (202)
Q Consensus        67 ~~~~~~~-----------------~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~  129 (202)
                      ..++...                 .+++.++..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+++
T Consensus       163 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DFG~a~  239 (382)
T 3tt0_A          163 REYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLAR  239 (382)
T ss_dssp             HHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECSCSCCC
T ss_pred             HHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCcceEEEcCCCcEEEcccCccc
Confidence            9988653                 49999999999999999999999   999999999999999999999999999998


Q ss_pred             eccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          130 LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       130 ~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ...............+|+.|+|||++.+..++.++||||+||+++||++ |..||.....
T Consensus       240 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~  299 (382)
T 3tt0_A          240 DIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV  299 (382)
T ss_dssp             CSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH
T ss_pred             ccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            6654433333344556889999999999899999999999999999999 9999976543

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.97  E-value=7.5e-33  Score=225.63  Aligned_cols=180  Identities=11%  Similarity=0.102  Sum_probs=130.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHH---HHHHhcccccccccc-------------------------c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQ---RMIAADNFSNLVGSE-------------------------D   52 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~-------------------------~   52 (202)
                      ||++++..+++.||.|+..............+..|.   ......+|+|++...                         +
T Consensus        89 V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (377)
T 3byv_A           89 YLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDER  168 (377)
T ss_dssp             EEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECTTSCSEEEC-----
T ss_pred             EEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhccCCccccccccCCC
Confidence            689999888888888875533222222233444554   333444677765321                         0


Q ss_pred             -----cceEEEEEccCCchhhhhccC-CCC-------HHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCc
Q 044746           53 -----TETYIKGFLAMGPFYLLCKKN-ILG-------FGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF  119 (202)
Q Consensus        53 -----~~~~~~~~~~~~~l~~~~~~~-~~~-------~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~  119 (202)
                           ...++++++ +|+|..++... .++       +..+..++.|++.||.|||+   .+|+||||||+|||++.++.
T Consensus       169 ~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrDikp~NIll~~~~~  244 (377)
T 3byv_A          169 DMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH---YGLVHTYLRPVDIVLDQRGG  244 (377)
T ss_dssp             -CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCC
T ss_pred             ceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCC
Confidence                 244667777 68998887542 233       47888899999999999999   99999999999999999999


Q ss_pred             eEEeeeecceeccccCcccccCCCCCCCcccCCcccCCC-----------CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          120 PKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPY-----------SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       120 ~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~-----------~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +||+|||+++....     ......| +.|+|||++.+.           .++.++|||||||++|||++|+.||.....
T Consensus       245 ~kL~DFG~a~~~~~-----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~  318 (377)
T 3byv_A          245 VFLTGFEHLVRDGA-----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAA  318 (377)
T ss_dssp             EEECCGGGCEETTC-----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC-----
T ss_pred             EEEEechhheecCC-----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCccccc
Confidence            99999999985432     1234466 899999999877           799999999999999999999999987654


Q ss_pred             cc
Q 044746          189 EG  190 (202)
Q Consensus       189 ~~  190 (202)
                      ..
T Consensus       319 ~~  320 (377)
T 3byv_A          319 LG  320 (377)
T ss_dssp             -C
T ss_pred             cc
Confidence            43

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.97  E-value=5.3e-32  Score=214.63  Aligned_cols=184  Identities=22%  Similarity=0.282  Sum_probs=145.0

Q ss_pred             CCcccc-----CCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhh
Q 044746            1 MEKPRN-----RGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++.+     ..++..||+|+.+...  .......+..|.......+|++++.      ..+...++++++++++|..+
T Consensus        39 V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~  116 (314)
T 2ivs_A           39 VVKATAFHLKGRAGYTTVAVKMLKENA--SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGF  116 (314)
T ss_dssp             EEEEEEETGGGCSSEEEEEEEECCTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHH
T ss_pred             EEEEEEeccCcccCcceEEEEeccCCC--CHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCceEEEEeecCCCCHHHH
Confidence            466654     3445677777654321  1122344666777777788998773      34556789999999999988


Q ss_pred             hccC-------------------------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEee
Q 044746           70 CKKN-------------------------ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAAD  124 (202)
Q Consensus        70 ~~~~-------------------------~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~d  124 (202)
                      +...                         .+++.++..++.|++.||.|||+   .+++||||||+||+++.++.++|+|
T Consensus       117 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dikp~NIli~~~~~~kl~D  193 (314)
T 2ivs_A          117 LRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAE---MKLVHRDLAARNILVAEGRKMKISD  193 (314)
T ss_dssp             HHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTEEEECC
T ss_pred             HHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHH---CCCcccccchheEEEcCCCCEEEcc
Confidence            8542                         38999999999999999999999   9999999999999999999999999


Q ss_pred             eecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhcc
Q 044746          125 FGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEISE  189 (202)
Q Consensus       125 fgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~~  189 (202)
                      ||+++...............+++.|+|||.+.+..++.++||||+|++++||++ |+.||.....+
T Consensus       194 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~  259 (314)
T 2ivs_A          194 FGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPE  259 (314)
T ss_dssp             CTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGG
T ss_pred             ccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence            999987654433333344556889999999988889999999999999999999 99999865543

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.97  E-value=8.3e-32  Score=210.58  Aligned_cols=181  Identities=18%  Similarity=0.224  Sum_probs=145.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..++..++.|+..............+..|.......+|++++.      ..+...++++++++++|..++.. .
T Consensus        25 V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~  104 (279)
T 3fdn_A           25 VYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLS  104 (279)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHHS
T ss_pred             EEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEEEecCCCCcHHHHHHhcC
Confidence            6889998888888888765443333333455667777777788888763      33445688899999999887754 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.......    .....|++.|+|||
T Consensus       105 ~~~~~~~~~~~~qi~~~l~~LH~---~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~----~~~~~~~~~y~aPE  177 (279)
T 3fdn_A          105 KFDEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR----RTDLCGTLDYLPPE  177 (279)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHT---TTCEECCCCGGGEEECTTSCEEECSCCEESCC------------CCCCTTCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCEecccCChHhEEEcCCCCEEEEeccccccCCccc----ccccCCCCCccCHh
Confidence            69999999999999999999999   999999999999999999999999999886443221    23346799999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .+.+..++.++|+||+|+++++|++|+.||.....
T Consensus       178 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  212 (279)
T 3fdn_A          178 MIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTY  212 (279)
T ss_dssp             HHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSH
T ss_pred             HhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcH
Confidence            99998899999999999999999999999986553

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.97  E-value=3.3e-31  Score=208.46  Aligned_cols=179  Identities=15%  Similarity=0.160  Sum_probs=142.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc-------cccccceEEEEEccCCchhhhhc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV-------GSEDTETYIKGFLAMGPFYLLCK--   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~~~~~~~~~~~~l~~~~~--   71 (202)
                      ||++++...++.||.|+.....     ....+..|........|++.+       ..+....++++++ +++|..++.  
T Consensus        25 V~~~~~~~~~~~vavK~~~~~~-----~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~   98 (296)
T 3uzp_A           25 IYLGTDIAAGEEVAIKLECVKT-----KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFC   98 (296)
T ss_dssp             EEEEEETTTTEEEEEEEEESCS-----SCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHT
T ss_pred             EEEEEEcCCCcEEEEEEecCCc-----chhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEec-CCCHHHHHHhh
Confidence            6889988888888888743321     223455666666666655433       2344456888888 889988886  


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEE---cCCCceEEeeeecceeccccCcc-----cccCCC
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTH-----ITSTGR  143 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~---~~~~~~kl~dfgl~~~~~~~~~~-----~~~~~~  143 (202)
                      ...+++..+..++.|++.||.|||+   ++++||||||+||++   +.++.+||+|||++.........     ......
T Consensus        99 ~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~  175 (296)
T 3uzp_A           99 SRKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNL  175 (296)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccccccccccccccccc
Confidence            4579999999999999999999999   999999999999999   47889999999999876543221     112345


Q ss_pred             CCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .||+.|+|||.+.+..++.++||||+|++++||++|+.||.....
T Consensus       176 ~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  220 (296)
T 3uzp_A          176 TGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKA  220 (296)
T ss_dssp             CSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCC
T ss_pred             ccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCc
Confidence            689999999999999999999999999999999999999986543

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.97  E-value=2.1e-31  Score=220.10  Aligned_cols=182  Identities=19%  Similarity=0.268  Sum_probs=137.7

Q ss_pred             CCccccCCCcceeehhhhchhhhh-----ccCCcccCCcHHHHHHhccccccccc-----cccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAM-----EMDKPIRFTSPQRMIAADNFSNLVGS-----EDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++++..+++.||.|+.......     .......+..|.......+|+|++..     .....++++++++++|..++
T Consensus       151 V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~lv~e~~~~g~L~~~l  230 (419)
T 3i6u_A          151 VKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAEDYYIVLELMEGGELFDKV  230 (419)
T ss_dssp             EEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEESSEEEEEEECCTTCBGGGGT
T ss_pred             EEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEecCceEEEEEcCCCCcHHHHH
Confidence            688999988888988875443211     12223456678888888899988742     23346889999999998877


Q ss_pred             cc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC---CceEEeeeecceeccccCcccccCCCCCC
Q 044746           71 KK-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN---FFPKAADFGLAKLYNREHTHITSTGRRRT  146 (202)
Q Consensus        71 ~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~---~~~kl~dfgl~~~~~~~~~~~~~~~~~gt  146 (202)
                      .. ..+++.++..++.|++.||.|||+   .+|+||||||+|||++.+   +.+||+|||+++.......   .....||
T Consensus       231 ~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt  304 (419)
T 3i6u_A          231 VGNKRLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSL---MRTLCGT  304 (419)
T ss_dssp             SSSCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC--------------
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEecCCCcceEEEeecccceecCCCcc---ccccCCC
Confidence            54 569999999999999999999999   999999999999999654   4599999999986543221   2345689


Q ss_pred             CcccCCcccCC---CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          147 PGCEAPELWMP---YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       147 ~~y~aPe~~~~---~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +.|+|||++.+   ..++.++||||+||++++|++|++||.....
T Consensus       305 ~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~  349 (419)
T 3i6u_A          305 PTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRT  349 (419)
T ss_dssp             CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSS
T ss_pred             CCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcc
Confidence            99999999863   5678899999999999999999999976443

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.97  E-value=1.3e-31  Score=214.28  Aligned_cols=181  Identities=18%  Similarity=0.273  Sum_probs=139.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHh-cccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAA-DNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.||.|+.+...... .....+..|...... .+|++++.      ..+...++++++.+++|..++.. 
T Consensus        45 V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~  123 (327)
T 3lm5_A           45 VRQCISKSTGQEYAAKFLKKRRRGQ-DCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPE  123 (327)
T ss_dssp             EEEEEETTTCCEEEEEEEESEETTE-ECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGGSSC
T ss_pred             EEEEEECCCCCEEEEEEEehhhcch-HHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEEEEecCCCcHHHHHHHh
Confidence            6889998888888888755432221 122334444444433 35576653      44556789999999999988754 


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC---CCceEEeeeecceeccccCcccccCCCCCCC
Q 044746           73 --NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHITSTGRRRTP  147 (202)
Q Consensus        73 --~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~---~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~  147 (202)
                        ..+++.++..++.|++.||.|||+   .+++||||||+||+++.   ++.++|+|||+++.......   .....||+
T Consensus       124 ~~~~~~~~~~~~i~~ql~~~L~~LH~---~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~---~~~~~gt~  197 (327)
T 3lm5_A          124 LAEMVSENDVIRLIKQILEGVYYLHQ---NNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACE---LREIMGTP  197 (327)
T ss_dssp             C-CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC------------CCCG
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHH---CCeecCcCChHHEEEecCCCCCcEEEeeCccccccCCccc---cccccCCc
Confidence              569999999999999999999999   99999999999999987   78999999999987643322   23346799


Q ss_pred             cccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          148 GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       148 ~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .|+|||++.+..++.++|+||+|+++++|++|+.||.....
T Consensus       198 ~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~  238 (327)
T 3lm5_A          198 EYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDN  238 (327)
T ss_dssp             GGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             CccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc
Confidence            99999999999999999999999999999999999976543

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=7.7e-32  Score=216.56  Aligned_cols=185  Identities=22%  Similarity=0.214  Sum_probs=142.9

Q ss_pred             CCccccCCCcceeehhhhchhhhh--ccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAM--EMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++++...+..+|.|+.......  ......++..|.......+|++++.      ..+...++++++++++|..++..
T Consensus        42 V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~  121 (345)
T 3hko_A           42 VRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNV  121 (345)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHEEE
T ss_pred             EEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCCeEEEEEeCCCCCcHHHHHHH
Confidence            688999888888888875543322  2233456777888888888998874      34456789999999999888741


Q ss_pred             -----------------------------------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCc
Q 044746           73 -----------------------------------------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPES  111 (202)
Q Consensus        73 -----------------------------------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~n  111 (202)
                                                               ..+++..+..++.|++.||.|||+   .+++||||||+|
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~N  198 (345)
T 3hko_A          122 FIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHN---QGICHRDIKPEN  198 (345)
T ss_dssp             EEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGG
T ss_pred             hhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH---CCccccCCChhh
Confidence                                                     124677888999999999999999   999999999999


Q ss_pred             EEEcCCC--ceEEeeeecceeccccCc--ccccCCCCCCCcccCCcccCC--CCCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          112 VLLDENF--FPKAADFGLAKLYNREHT--HITSTGRRRTPGCEAPELWMP--YSVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       112 il~~~~~--~~kl~dfgl~~~~~~~~~--~~~~~~~~gt~~y~aPe~~~~--~~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      |+++.++  .+||+|||+++.......  ........||+.|+|||++.+  ..++.++||||+|++++||++|+.||..
T Consensus       199 Ill~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~  278 (345)
T 3hko_A          199 FLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPG  278 (345)
T ss_dssp             EEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             EEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence            9998766  899999999986543221  112334568999999999875  6788999999999999999999999976


Q ss_pred             hhc
Q 044746          186 EIS  188 (202)
Q Consensus       186 ~~~  188 (202)
                      ...
T Consensus       279 ~~~  281 (345)
T 3hko_A          279 VND  281 (345)
T ss_dssp             SSH
T ss_pred             CCh
Confidence            544

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.97  E-value=4.9e-32  Score=220.37  Aligned_cols=178  Identities=19%  Similarity=0.237  Sum_probs=129.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc------------ccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE------------DTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------~~~~~~~~~~~~~~l~~   68 (202)
                      ||++++..+++.||.|+...... ......++..|.......+|+|++...            ....++++++ +++|..
T Consensus        45 V~~a~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~  122 (367)
T 2fst_X           45 VCAAFDTKTGLRVAVKKLSRPFQ-SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNN  122 (367)
T ss_dssp             EEEEEETTTTEEEEEEECSSTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECC-CEECC-
T ss_pred             EEEEEECCCCCEEEEEEeCcccc-CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCeEEEEeccc-CCCHHH
Confidence            68898888888888776433211 111233455677777788899877422            2234556555 788988


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      ++....+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+++.....     .....||+.
T Consensus       123 ~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~  194 (367)
T 2fst_X          123 IVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTADE-----MTGYVATRW  194 (367)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECC--------------------CCCT
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHhhEEECCCCCEEEeecccccccccc-----CCCcCcCcC
Confidence            8888889999999999999999999999   99999999999999999999999999999864432     233567999


Q ss_pred             ccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          149 CEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       149 y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |+|||++.+ ..++.++||||+||+++||++|++||.+...
T Consensus       195 y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~  235 (367)
T 2fst_X          195 YRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH  235 (367)
T ss_dssp             TCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             ccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            999999887 6789999999999999999999999987654

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.97  E-value=2e-31  Score=209.81  Aligned_cols=183  Identities=18%  Similarity=0.225  Sum_probs=148.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.++.|+..............+..|.......+|++++.      ..+...++++++++++|..+... .
T Consensus        31 Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~  110 (294)
T 2rku_A           31 CFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRK  110 (294)
T ss_dssp             EEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHC
T ss_pred             EEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEEecCCCCCHHHHHHhcC
Confidence            6889998888888888754432222222344666777777888998764      34445688999999999887754 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.++..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++........  ......||+.|+|||
T Consensus       111 ~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE  185 (294)
T 2rku_A          111 ALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE--RKKVLCGTPNYIAPE  185 (294)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTC--CBCCCCSCCSSCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEcCCCCEEEEeccCceecccCcc--ccccccCCCCcCCcc
Confidence            69999999999999999999999   9999999999999999999999999999986543222  123356799999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .+.+..++.++|+||+|+++++|++|+.||.....
T Consensus       186 ~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~  220 (294)
T 2rku_A          186 VLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL  220 (294)
T ss_dssp             HHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH
T ss_pred             hhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            99988899999999999999999999999976543

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.97  E-value=1.6e-31  Score=209.43  Aligned_cols=181  Identities=17%  Similarity=0.178  Sum_probs=148.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.|+.|+..............+..|.......+|++++.      ......++++++++++|..++.. +
T Consensus        30 Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  109 (284)
T 2vgo_A           30 VYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHG  109 (284)
T ss_dssp             EEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHHS
T ss_pred             EEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEEEeCCCCcHHHHHHhcC
Confidence            6888888888888888765443333333445677777778888898763      34455688899999999887754 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.......    .....|++.|+|||
T Consensus       110 ~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~~~y~aPE  182 (284)
T 2vgo_A          110 RFDEQRSATFMEELADALHYCHE---RKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLR----RRTMCGTLDYLPPE  182 (284)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECTTCCEEECCCTTCEECSSSC----BCCCCSCGGGCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEEcCCCCEEEecccccccCcccc----cccccCCCCcCCHH
Confidence            69999999999999999999999   999999999999999999999999999987654321    23356799999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .+.+..++.++|+||+|+++++|++|+.||.....
T Consensus       183 ~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  217 (284)
T 2vgo_A          183 MIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSH  217 (284)
T ss_dssp             HHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH
T ss_pred             HhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCH
Confidence            99998899999999999999999999999976543

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.97  E-value=1.4e-31  Score=217.17  Aligned_cols=183  Identities=20%  Similarity=0.282  Sum_probs=144.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc-----------ccceEEEEEccCCchhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE-----------DTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++++..+++.||.|+.....  ......++..|.......+|+|++...           ....++++++. ++|..+
T Consensus        43 V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~iv~e~~~-~~L~~~  119 (364)
T 3qyz_A           43 VCSAYDNLNKVRVAIKKISPFE--HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLME-TDLYKL  119 (364)
T ss_dssp             EEEEEETTTTEEEEEEEECCTT--CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEECCS-EEHHHH
T ss_pred             EEEEEECCCCeEEEEEEecccc--CcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceEEEEEcccC-cCHHHH
Confidence            6889888888888877654321  111224466777778888899887422           23356667666 689888


Q ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc-ccCCCCCCCc
Q 044746           70 CKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-TSTGRRRTPG  148 (202)
Q Consensus        70 ~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~gt~~  148 (202)
                      +....+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.......... ......||+.
T Consensus       120 l~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~  196 (364)
T 3qyz_A          120 LKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRW  196 (364)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGG
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCChHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccC
Confidence            888899999999999999999999999   999999999999999999999999999998765432211 1234578999


Q ss_pred             ccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          149 CEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       149 y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |+|||++.+ ..++.++||||+||++++|++|++||.+....
T Consensus       197 y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~  238 (364)
T 3qyz_A          197 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYL  238 (364)
T ss_dssp             GCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGG
T ss_pred             CCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChH
Confidence            999998654 45899999999999999999999999876543

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.97  E-value=3e-31  Score=213.92  Aligned_cols=184  Identities=20%  Similarity=0.248  Sum_probs=141.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc--------------cccceEEEEEccCCch
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS--------------EDTETYIKGFLAMGPF   66 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------------~~~~~~~~~~~~~~~l   66 (202)
                      ||++++..+++.||.|+...... .......+..|.......+|++++..              .+...++++++++ ++
T Consensus        33 V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l  110 (351)
T 3mi9_A           33 VFKARHRKTGQKVALKKVLMENE-KEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DL  110 (351)
T ss_dssp             EEEEEETTTCCEEEEEECCCSSC-SSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------CEEEEEEECCSE-EH
T ss_pred             EEEEEECCCCCEEEEEEEecccc-cccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCCceEEEEEeccCC-CH
Confidence            68899988888888776433221 22223345567777788889987642              2334678888875 55


Q ss_pred             hhhhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccC--cccccCC
Q 044746           67 YLLCKK--NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH--THITSTG  142 (202)
Q Consensus        67 ~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~--~~~~~~~  142 (202)
                      ...+..  ..+++.++..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+++......  .......
T Consensus       111 ~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~  187 (351)
T 3mi9_A          111 AGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHR---NKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTN  187 (351)
T ss_dssp             HHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCS
T ss_pred             HHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCHHHEEEcCCCCEEEccchhcccccccccccccccCC
Confidence            554433  469999999999999999999999   999999999999999999999999999998654221  1122344


Q ss_pred             CCCCCcccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          143 RRRTPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       143 ~~gt~~y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      ..||+.|+|||++.+ ..++.++||||+||+++||++|++||......
T Consensus       188 ~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~  235 (351)
T 3mi9_A          188 RVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQ  235 (351)
T ss_dssp             SCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             cccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChH
Confidence            567999999999876 45899999999999999999999999876543

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.97  E-value=6.3e-32  Score=216.16  Aligned_cols=183  Identities=21%  Similarity=0.293  Sum_probs=141.1

Q ss_pred             CCccccCCCcc---eeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTR---FITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++++...++   .||.|+.+...  .......|..|.......+|++++.      .+....++++++++++|..++.
T Consensus        65 V~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~  142 (325)
T 3kul_A           65 VCYGRLRVPGQRDVPVAIKALKAGY--TERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLR  142 (325)
T ss_dssp             EEEEEECCTTSCCEEEEEEEECTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEEEECCTTCBHHHHHH
T ss_pred             EEEEEEecCCCCCceEEEEecCCCC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEEeeCCCCCcHHHHHH
Confidence            57777764444   36666543321  1112245667777778888998763      4455678999999999999885


Q ss_pred             c--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc-ccccCCCCCCCc
Q 044746           72 K--NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT-HITSTGRRRTPG  148 (202)
Q Consensus        72 ~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~gt~~  148 (202)
                      .  ..+++.++..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+++....... ........+|+.
T Consensus       143 ~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~  219 (325)
T 3kul_A          143 THDGQFTIMQLVGMLRGVGAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIR  219 (325)
T ss_dssp             TTTTCSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCSSCEECC----CCEECC---CCGG
T ss_pred             hcccCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEECCCCCEEECCCCcccccccCccceeeccCCCCccc
Confidence            4  469999999999999999999999   9999999999999999999999999999987654322 122233455788


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |+|||++.+..++.++||||+|++++||++ |+.||.....
T Consensus       220 y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~  260 (325)
T 3kul_A          220 WTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTN  260 (325)
T ss_dssp             GSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCH
T ss_pred             ccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCH
Confidence            999999988889999999999999999999 9999976544

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.97  E-value=3.9e-31  Score=209.27  Aligned_cols=182  Identities=24%  Similarity=0.347  Sum_probs=141.1

Q ss_pred             CCccccCCCcceeehhhhch-hhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc--
Q 044746            1 MEKPRNRGSTRFITRTIDKS-LDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK--   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~--   71 (202)
                      ||+++..  +..++.|.... ......+....+..|.......+|++++.      ..+...++++++++++|..++.  
T Consensus        47 Vy~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  124 (307)
T 2nru_A           47 VYKGYVN--NTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCL  124 (307)
T ss_dssp             EEEEESS--SCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTG
T ss_pred             EEEEEEC--CceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhc
Confidence            5677663  34455444322 21122223345677777788888998763      3445678999999999988774  


Q ss_pred             --cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           72 --KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        72 --~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                        ...+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++................||+.|
T Consensus       125 ~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y  201 (307)
T 2nru_A          125 DGTPPLSWHMRCKIAQGAANGINFLHE---NHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAY  201 (307)
T ss_dssp             GGCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGG
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecCCCCHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCc
Confidence              3459999999999999999999999   99999999999999999999999999999876543333333445689999


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +|||.+.+ .++.++|+||+|+++++|++|++||.....
T Consensus       202 ~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~  239 (307)
T 2nru_A          202 MAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHRE  239 (307)
T ss_dssp             CCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBS
T ss_pred             CChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcc
Confidence            99998875 578999999999999999999999986543

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.97  E-value=1.9e-31  Score=212.75  Aligned_cols=182  Identities=18%  Similarity=0.250  Sum_probs=146.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccC---CcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMD---KPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++++..+++.+|.|+..........   ....+..|.......+|++++.      ......++++++++++|..++.
T Consensus        28 V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~  107 (321)
T 2a2a_A           28 VKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLA  107 (321)
T ss_dssp             EEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH
T ss_pred             EEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEEcCCCCcHHHHHH
Confidence            688999888888887765443222111   1234667777778888998763      3445568899999999998886


Q ss_pred             c-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC----ceEEeeeecceeccccCcccccCCCCCC
Q 044746           72 K-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF----FPKAADFGLAKLYNREHTHITSTGRRRT  146 (202)
Q Consensus        72 ~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~----~~kl~dfgl~~~~~~~~~~~~~~~~~gt  146 (202)
                      . ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++    .++|+|||++........   .....||
T Consensus       108 ~~~~~~~~~~~~i~~qi~~aL~~lH~---~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~gt  181 (321)
T 2a2a_A          108 QKESLSEEEATSFIKQILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE---FKNIFGT  181 (321)
T ss_dssp             TCSCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTTCC---CCCCCSC
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCChHHEEEecCCCCcCCEEEccCccceecCcccc---ccccCCC
Confidence            4 458999999999999999999999   9999999999999999887    799999999987654322   2345679


Q ss_pred             CcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       147 ~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +.|+|||.+.+..++.++|+||+|+++++|++|+.||.....
T Consensus       182 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  223 (321)
T 2a2a_A          182 PEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK  223 (321)
T ss_dssp             GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH
T ss_pred             CCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCH
Confidence            999999999988999999999999999999999999976543

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=2e-31  Score=215.68  Aligned_cols=183  Identities=17%  Similarity=0.193  Sum_probs=140.1

Q ss_pred             CCccccC---CCcceeehhhhchhhh-hccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhh
Q 044746            1 MEKPRNR---GSTRFITRTIDKSLDA-MEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~---~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++++.   ..++.||.|+.+.... ........+..|....... +|++++.      ......++++++++++|..+
T Consensus        70 Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~  149 (355)
T 1vzo_A           70 VFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTH  149 (355)
T ss_dssp             EEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEEECCCCSCBHHHH
T ss_pred             EEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCceEEEEeecCCCCCHHHH
Confidence            5777763   4677777776543321 2223344566676666555 5777663      33455688999999999888


Q ss_pred             hcc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           70 CKK-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        70 ~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      +.. ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+++........ ......||+.
T Consensus       150 l~~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~-~~~~~~gt~~  225 (355)
T 1vzo_A          150 LSQRERFTEHEVQIYVGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETE-RAYDFCGTIE  225 (355)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGG-GGCGGGSCCT
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCcEEEeeCCCCeecccCCCC-cccCcccCcC
Confidence            754 569999999999999999999999   99999999999999999999999999999865433221 1233568999


Q ss_pred             ccCCcccCC--CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          149 CEAPELWMP--YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       149 y~aPe~~~~--~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |+|||++.+  ..++.++|||||||++|||++|+.||....
T Consensus       226 y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~  266 (355)
T 1vzo_A          226 YMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDG  266 (355)
T ss_dssp             TCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTT
T ss_pred             ccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCC
Confidence            999999985  347899999999999999999999997544

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.97  E-value=1.2e-31  Score=210.83  Aligned_cols=180  Identities=21%  Similarity=0.253  Sum_probs=134.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..+..++++++....  ........+..|.......+|++++.      ..+...++++++.+ +|..++..  
T Consensus        18 V~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~   94 (288)
T 1ob3_A           18 VYKAQNNYGETFALKKIRLEK--EDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQ-DLKKLLDVCE   94 (288)
T ss_dssp             EEEEEETTSCEEEEEEECCSS--GGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSE-EHHHHHHTST
T ss_pred             EEEEEcCCCCEEEEEEEeccc--cccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEecCC-CHHHHHHhcc
Confidence            688888544444444443222  11222344566777777888998763      34455678888775 77776654  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   ++++||||||+||+++.++.+||+|||+++.......  ......||+.|+||
T Consensus        95 ~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~t~~y~aP  169 (288)
T 1ob3_A           95 GGLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR--KYTHEIVTLWYRAP  169 (288)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----------CCCTTCCH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEEeECccccccCcccc--ccccccccccccCc
Confidence            569999999999999999999999   9999999999999999999999999999976543221  12334679999999


Q ss_pred             cccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.+. .++.++||||+||+++||++|++||.....
T Consensus       170 E~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~  206 (288)
T 1ob3_A          170 DVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSE  206 (288)
T ss_dssp             HHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             hheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            998764 589999999999999999999999976543

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.97  E-value=1.3e-31  Score=212.71  Aligned_cols=184  Identities=15%  Similarity=0.148  Sum_probs=138.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.|+.|+..............+..|.......+|++++.      ..+...++++++++++|..++.. .
T Consensus        50 Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  129 (309)
T 2h34_A           50 VYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRRQG  129 (309)
T ss_dssp             EEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCCCEEHHHHHHHHC
T ss_pred             EEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEEEEecCCCCHHHHHHhcC
Confidence            6889888888888888765443322222345667777777788888763      33445688999999999988865 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.++..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++......... ......|++.|+|||
T Consensus       130 ~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE  205 (309)
T 2h34_A          130 PLAPPRAVAIVRQIGSALDAAHA---AGATHRDVKPENILVSADDFAYLVDFGIASATTDEKLT-QLGNTVGTLYYMAPE  205 (309)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSCCC-----------------CCGGGCCGG
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CcCCcCCCChHHEEEcCCCCEEEecCccCccccccccc-cccccCCCcCccCHH
Confidence            69999999999999999999999   99999999999999999999999999999765433211 123346799999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .+.+..++.++|+||+|++++||++|+.||.....
T Consensus       206 ~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  240 (309)
T 2h34_A          206 RFSESHATYRADIYALTCVLYECLTGSPPYQGDQL  240 (309)
T ss_dssp             GTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHH
T ss_pred             HHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchH
Confidence            99988899999999999999999999999976553

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.97  E-value=1.4e-31  Score=215.65  Aligned_cols=182  Identities=13%  Similarity=0.095  Sum_probs=139.1

Q ss_pred             CCccccCC---Ccceeehhhhchhhhh--------ccCCcccCCcHHHHHHhccccccccc----------cccceEEEE
Q 044746            1 MEKPRNRG---STRFITRTIDKSLDAM--------EMDKPIRFTSPQRMIAADNFSNLVGS----------EDTETYIKG   59 (202)
Q Consensus         1 v~k~~~~~---~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~----------~~~~~~~~~   59 (202)
                      ||++++..   ....++.|+.......        .......+..+.......+|++++..          ....+++++
T Consensus        53 Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e  132 (345)
T 2v62_A           53 IYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVME  132 (345)
T ss_dssp             EEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEEEEEESSSCEEEEEEEE
T ss_pred             EEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecccccccCCCcEEEEEEe
Confidence            67888876   6666776654332111        00111223344455566788877631          445678889


Q ss_pred             EccCCchhhhhccC-CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC--ceEEeeeecceeccccCc
Q 044746           60 FLAMGPFYLLCKKN-ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF--FPKAADFGLAKLYNREHT  136 (202)
Q Consensus        60 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~--~~kl~dfgl~~~~~~~~~  136 (202)
                      ++ +++|..++... .+++.++..++.|++.||.|||+   .+++||||||+||+++.++  .+||+|||+++.......
T Consensus       133 ~~-~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~  208 (345)
T 2v62_A          133 RL-GIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHE---NEYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGN  208 (345)
T ss_dssp             CE-EEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEESSSTTSEEECCCTTCEESSGGGC
T ss_pred             cc-CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCcCHHHEEEccCCCCcEEEEeCCCceecccccc
Confidence            99 89999988654 69999999999999999999999   9999999999999998877  999999999987643221


Q ss_pred             c-----cccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          137 H-----ITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       137 ~-----~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      .     .......||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus       209 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~  263 (345)
T 2v62_A          209 HKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQN  263 (345)
T ss_dssp             CCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGG
T ss_pred             cccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCcccc
Confidence            1     1123456899999999999989999999999999999999999999753

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.97  E-value=1.6e-31  Score=214.49  Aligned_cols=182  Identities=18%  Similarity=0.230  Sum_probs=148.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.++.|+..............+..|.......+|++++.      ..+..+++++++++++|..+... .
T Consensus        57 Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~  136 (335)
T 2owb_A           57 CFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRK  136 (335)
T ss_dssp             EEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHHHC
T ss_pred             EEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEecCCCCCHHHHHhccC
Confidence            6889998888888888754432222222344666777777888998764      33455688999999999887754 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.++..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++........  ......||+.|+|||
T Consensus       137 ~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE  211 (335)
T 2owb_A          137 ALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE--RKKVLCGTPNYIAPE  211 (335)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTC--CBCCCCSCCSSCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCCEecCCCchhEEEcCCCCEEEeeccCceecccCcc--cccccCCCccccCHH
Confidence            69999999999999999999999   9999999999999999999999999999986543221  123356799999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ++.+..++.++|+||+|+++++|++|+.||....
T Consensus       212 ~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  245 (335)
T 2owb_A          212 VLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSC  245 (335)
T ss_dssp             HHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             HhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCC
Confidence            9998889999999999999999999999997654

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.97  E-value=1.8e-31  Score=216.54  Aligned_cols=178  Identities=20%  Similarity=0.193  Sum_probs=134.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||++++..+++.||.|+.....    .....+..|.......+|+|++.      ..+...++++++++++|..++. .+
T Consensus        36 V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  111 (361)
T 3uc3_A           36 ARLMRDKLTKELVAVKYIERGA----AIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICNAG  111 (361)
T ss_dssp             EEEEEETTTCCEEEEEEEESST----TSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHS
T ss_pred             EEEEEECCCCcEEEEEEEecCc----cccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeCCCCCHHHHHHhcC
Confidence            6889999888888888754321    11234556777777888998774      3445668999999999988774 46


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCc--eEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF--PKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~--~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                      .+++..+..++.|++.||.|||+   ++|+||||||+||+++.++.  +||+|||+++......   ......||+.|+|
T Consensus       112 ~~~~~~~~~i~~ql~~~L~~LH~---~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~a  185 (361)
T 3uc3_A          112 RFSEDEARFFFQQLLSGVSYCHS---MQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHS---QPKSTVGTPAYIA  185 (361)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH---TTCCSCCCCGGGEEECSSSSCCEEECCCCCC------------------CTTSC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCceEEEeecCccccccccC---CCCCCcCCCCcCC
Confidence            79999999999999999999999   99999999999999987665  9999999997432221   1233467999999


Q ss_pred             CcccCCCCCCch-hhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          152 PELWMPYSVTQK-CDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       152 Pe~~~~~~~~~~-~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ||++.+..++.+ +||||+||++|+|++|+.||.....
T Consensus       186 PE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~  223 (361)
T 3uc3_A          186 PEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEE  223 (361)
T ss_dssp             HHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----
T ss_pred             hhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCcc
Confidence            999988777666 8999999999999999999987544

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.97  E-value=5.2e-31  Score=208.34  Aligned_cols=180  Identities=22%  Similarity=0.223  Sum_probs=149.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++++..+++.|+.|+.....  .......+..|.......+|++++.      ......++++++++++|..++..+.
T Consensus        38 V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~  115 (303)
T 3a7i_A           38 VFKGIDNRTQKVVAIKIIDLEE--AEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGP  115 (303)
T ss_dssp             EEEEEETTTCCEEEEEEEETTT--CSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHTTSC
T ss_pred             EEEEEECCCCcEEEEEEecccc--cHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEeCCCCcHHHHHhcCC
Confidence            6888888888888888754332  1223345667777777788888763      3344568899999999999999889


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++........  ......|++.|+|||.
T Consensus       116 ~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~  190 (303)
T 3a7i_A          116 LDETQIATILREILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI--KRNTFVGTPFWMAPEV  190 (303)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBC--CBCCCCSCGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChheEEECCCCCEEEeecccceecCcccc--ccCccCCCcCccCHHH
Confidence            9999999999999999999999   9999999999999999999999999999986544322  1234567999999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +.+..++.++|+||+|+++++|++|+.||....
T Consensus       191 ~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  223 (303)
T 3a7i_A          191 IKQSAYDSKADIWSLGITAIELARGEPPHSELH  223 (303)
T ss_dssp             HTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred             HhcCCCCchhhhHHHHHHHHHHccCCCCCCCcC
Confidence            999899999999999999999999999997644

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.97  E-value=5.2e-31  Score=221.18  Aligned_cols=179  Identities=15%  Similarity=0.163  Sum_probs=141.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc-------cccccceEEEEEccCCchhhhhc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV-------GSEDTETYIKGFLAMGPFYLLCK--   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~~~~~~~~~~~~l~~~~~--   71 (202)
                      ||++++...++.||.|+.....     ....+..|..+.....+.+.+       ..+....++++++ +++|..++.  
T Consensus        23 Vy~a~~~~~~~~vAvK~~~~~~-----~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~-g~sL~~ll~~~   96 (483)
T 3sv0_A           23 IYLGTNIQTNEEVAIKLENVKT-----KHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL-GPSLEDLFNFC   96 (483)
T ss_dssp             EEEEEETTTCCEEEEEEEETTC-----SSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHT
T ss_pred             EEEEEECCCCcEEEEEEecccc-----ccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC-CCCHHHHHHhh
Confidence            7899988888999988754322     122355555555555443221       2344456778887 899988886  


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEE---cCCCceEEeeeecceeccccCcc-----cccCCC
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTH-----ITSTGR  143 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~---~~~~~~kl~dfgl~~~~~~~~~~-----~~~~~~  143 (202)
                      ...+++..+..++.||+.||.|||+   .+|+||||||+|||+   +.++.+||+|||+++........     ......
T Consensus        97 ~~~l~~~~~~~i~~qi~~aL~yLH~---~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~  173 (483)
T 3sv0_A           97 SRKLSLKTVLMLADQMINRVEFVHS---KSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNL  173 (483)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCcccccccccccccc
Confidence            5679999999999999999999999   999999999999999   57899999999999876543221     122356


Q ss_pred             CCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .||+.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus       174 ~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~  218 (483)
T 3sv0_A          174 TGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKA  218 (483)
T ss_dssp             CSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCC
T ss_pred             CCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccc
Confidence            789999999999999999999999999999999999999987544

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.97  E-value=3.9e-31  Score=211.38  Aligned_cols=181  Identities=20%  Similarity=0.305  Sum_probs=137.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..+++.||.|+.+...  .......+..|.......+|++++.      ......+++++++ ++|..++..  
T Consensus        18 V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~   94 (324)
T 3mtl_A           18 VYKGKSKLTDNLVALKEIRLEH--EEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-KDLKQYLDDCG   94 (324)
T ss_dssp             EEEEEETTTCCEEEEEEECC--------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEECCS-EEHHHHHHHTT
T ss_pred             EEEEEECCCCcEEEEEEEeccc--ccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecccc-cCHHHHHHhcC
Confidence            7899998888888887654332  2222334566777777888898763      3445568888887 477666643  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||++........  ......||+.|+||
T Consensus        95 ~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y~aP  169 (324)
T 3mtl_A           95 NIINMHNVKLFLFQLLRGLAYCHR---QKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTK--TYDNEVVTLWYRPP  169 (324)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHH---TTEEESSCCGGGEEECTTCCEEECSSSEEECC--------------CGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCcCHHHEEECCCCCEEEccCcccccccCCcc--ccccccCcccccCh
Confidence            359999999999999999999999   9999999999999999999999999999986443221  12334679999999


Q ss_pred             cccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          153 ELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       153 e~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |++.+ ..++.++||||+||++++|++|++||.+....
T Consensus       170 E~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~  207 (324)
T 3mtl_A          170 DILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVE  207 (324)
T ss_dssp             HHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             hhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            99876 56899999999999999999999999876543

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.97  E-value=7.5e-32  Score=226.29  Aligned_cols=181  Identities=18%  Similarity=0.260  Sum_probs=147.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh-ccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC-KKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~-~~~   73 (202)
                      ||++++..+++.||.|+..............+..|..+....+|+|++.      ..+...++++++.+++|...+ ...
T Consensus        42 V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~  121 (484)
T 3nyv_A           42 VILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRK  121 (484)
T ss_dssp             EEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTCS
T ss_pred             EEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCCCCHHHHHHhcC
Confidence            6889998888888888765443333334455777777888889998874      344566888999999998766 445


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEE---cCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~---~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      .+++..+..++.|++.||.|||+   ++|+||||||+||++   +.++.+||+|||+++........   ....||+.|+
T Consensus       122 ~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~---~~~~gt~~y~  195 (484)
T 3nyv_A          122 RFSEVDAARIIRQVLSGITYMHK---NKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKM---KDKIGTAYYI  195 (484)
T ss_dssp             CCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCSH---HHHTTGGGTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEccccccc---ccCCCCcccc
Confidence            79999999999999999999999   999999999999999   46789999999999865433221   2235799999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |||++.+ .++.++||||+||++|+|++|++||.+...
T Consensus       196 aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~  232 (484)
T 3nyv_A          196 APEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANE  232 (484)
T ss_dssp             CHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             CceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCH
Confidence            9999876 689999999999999999999999987554

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.97  E-value=1.2e-31  Score=212.45  Aligned_cols=183  Identities=19%  Similarity=0.290  Sum_probs=143.4

Q ss_pred             CCccc-----cCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhh
Q 044746            1 MEKPR-----NRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~   68 (202)
                      ||+++     +...++.|+.|+.+.....  .....+..|....... +|++++.      ..+...++++++++++|..
T Consensus        39 V~~~~~~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~  116 (313)
T 1t46_A           39 VVEATAYGLIKSDAAMTVAVKMLKPSAHL--TEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLN  116 (313)
T ss_dssp             EEEEEEESSSSTTCEEEEEEEEECTTCCH--HHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHH
T ss_pred             eEEEEEeeccccchhhhhHHHhcCcchhH--HHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCcEEEEecCCCCCHHH
Confidence            46665     4556677777765432211  1123455666666666 8888763      3455678999999999998


Q ss_pred             hhccC-------------------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecce
Q 044746           69 LCKKN-------------------ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK  129 (202)
Q Consensus        69 ~~~~~-------------------~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~  129 (202)
                      ++...                   .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.
T Consensus       117 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  193 (313)
T 1t46_A          117 FLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNILLTHGRITKICDFGLAR  193 (313)
T ss_dssp             HHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEETTTEEEECCCGGGS
T ss_pred             HHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCccceEEEcCCCCEEEccccccc
Confidence            88543                   38999999999999999999999   999999999999999999999999999998


Q ss_pred             eccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          130 LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       130 ~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ...............+|+.|+|||.+.+..++.++||||+|++++||++ |+.||.....
T Consensus       194 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~  253 (313)
T 1t46_A          194 DIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPV  253 (313)
T ss_dssp             CTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCS
T ss_pred             cccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccc
Confidence            7654433333344556889999999988889999999999999999999 9999976543

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.97  E-value=4.9e-31  Score=216.27  Aligned_cols=175  Identities=18%  Similarity=0.193  Sum_probs=137.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc------------cceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED------------TETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------~~~~~~~~~~~~~l~~   68 (202)
                      ||++++..++.++++++....        .....|..+....+|+|++...+            +..+++++++++.+..
T Consensus        56 V~~a~~~~~~~~aikk~~~~~--------~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~  127 (394)
T 4e7w_A           56 VFQAKLVESDEVAIKKVLQDK--------RFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRA  127 (394)
T ss_dssp             EEEEEETTTEEEEEEEEECCT--------TSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEECCSEEHHHH
T ss_pred             EEEEEECCCCeEEEEEEecCc--------chHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEeeccCccHHHH
Confidence            688888888887666664321        22345777788889998874221            1447788887764433


Q ss_pred             hh----ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc-CCCceEEeeeecceeccccCcccccCCC
Q 044746           69 LC----KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD-ENFFPKAADFGLAKLYNREHTHITSTGR  143 (202)
Q Consensus        69 ~~----~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~-~~~~~kl~dfgl~~~~~~~~~~~~~~~~  143 (202)
                      ..    ....+++..+..++.|++.||.|||+   .+|+||||||+||+++ .++.+||+|||+++.......   ....
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~~---~~~~  201 (394)
T 4e7w_A          128 SRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHS---IGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEP---NVSY  201 (394)
T ss_dssp             HHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCC---CCSS
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCCC---Cccc
Confidence            32    25679999999999999999999999   9999999999999999 789999999999987543322   2335


Q ss_pred             CCCCcccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          144 RRTPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      .||+.|+|||++.+. .++.++||||+||+++||++|++||.+....
T Consensus       202 ~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~  248 (394)
T 4e7w_A          202 ICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGI  248 (394)
T ss_dssp             CSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             ccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            679999999998765 5899999999999999999999999876543

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.97  E-value=3.8e-31  Score=207.52  Aligned_cols=179  Identities=21%  Similarity=0.278  Sum_probs=141.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhc----cCCcccCCcHHHHHHhccccccccc----cccceEEEEEccCCchhhhhc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAME----MDKPIRFTSPQRMIAADNFSNLVGS----EDTETYIKGFLAMGPFYLLCK-   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~~~~~~~~l~~~~~-   71 (202)
                      ||++++..+++.||.|+........    .+...++..|.......+|++++..    .....++++++++++|...+. 
T Consensus        35 V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~lv~e~~~~~~L~~~l~~  114 (287)
T 4f0f_A           35 VHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLD  114 (287)
T ss_dssp             EEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTTEEEEECCTTCBHHHHHHC
T ss_pred             EEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCCeEEEEecCCCCHHHHHhc
Confidence            6889888888888887653322211    1223456777777888889987742    122368999999999987773 


Q ss_pred             -cCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEecCCCCcEEEcCCCc-----eEEeeeecceeccccCcccccCCC
Q 044746           72 -KNILGFGQLREIEVSTSKGIAYLHEECRQK--IVHYDIKPESVLLDENFF-----PKAADFGLAKLYNREHTHITSTGR  143 (202)
Q Consensus        72 -~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~--iiHrdlk~~nil~~~~~~-----~kl~dfgl~~~~~~~~~~~~~~~~  143 (202)
                       ...+++..+..++.|++.||.|||+   .+  ++||||||+||+++.++.     ++|+|||+++.....     ....
T Consensus       115 ~~~~~~~~~~~~~~~~l~~~l~~lH~---~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~~-----~~~~  186 (287)
T 4f0f_A          115 KAHPIKWSVKLRLMLDIALGIEYMQN---QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHS-----VSGL  186 (287)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHHHHT---SSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCSSC-----EECC
T ss_pred             ccCCccHHHHHHHHHHHHHHHHHHHh---CCCCeecCCCCcceEEEeccCCCCceeEEeCCCCcccccccc-----cccc
Confidence             3469999999999999999999999   88  999999999999987776     999999999754321     2335


Q ss_pred             CCCCcccCCcccC--CCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          144 RRTPGCEAPELWM--PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       144 ~gt~~y~aPe~~~--~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      .||+.|+|||.+.  ...++.++||||+|+++|||++|+.||....
T Consensus       187 ~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~  232 (287)
T 4f0f_A          187 LGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYS  232 (287)
T ss_dssp             CCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred             CCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCcccc
Confidence            6799999999984  4567899999999999999999999997644

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.97  E-value=1.2e-31  Score=218.37  Aligned_cols=183  Identities=19%  Similarity=0.282  Sum_probs=131.9

Q ss_pred             CCccccC---CCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNR---GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++++.   ..+..||.|+.+...  .......|..|..+....+|++++.      ......++++++++++|..++.
T Consensus        61 Vy~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~  138 (373)
T 2qol_A           61 VCSGRLKLPSKKEISVAIKTLKVGY--TEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR  138 (373)
T ss_dssp             EEEC-CBCTTSCBCCEEEEECCTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHH
T ss_pred             EEEEEEecCCCCceeEEEEEecCcc--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEEEeCCCCCcHHHHHH
Confidence            6777765   445567766543321  1112345777777888888998763      3445678999999999999986


Q ss_pred             cC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc-cccCCCCCCCc
Q 044746           72 KN--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-ITSTGRRRTPG  148 (202)
Q Consensus        72 ~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~gt~~  148 (202)
                      ..  .+++.++..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++........ .......+++.
T Consensus       139 ~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~  215 (373)
T 2qol_A          139 KHDAQFTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIR  215 (373)
T ss_dssp             TTTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC----------------------CT
T ss_pred             hCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCC
Confidence            54  59999999999999999999999   99999999999999999999999999999865433221 11222345778


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |+|||++.+..++.++||||||+++||+++ |+.||.....
T Consensus       216 y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~  256 (373)
T 2qol_A          216 WTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSN  256 (373)
T ss_dssp             TSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCH
T ss_pred             ccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            999999998899999999999999999998 9999975543

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.97  E-value=2.2e-31  Score=207.07  Aligned_cols=179  Identities=20%  Similarity=0.282  Sum_probs=133.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhc-cCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAME-MDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~   73 (202)
                      ||++++.  +..+|.|+.+...... ......+..|.......+|++++.      ..+...++++++++++|..++...
T Consensus        23 V~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~  100 (271)
T 3dtc_A           23 VYRAFWI--GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGK  100 (271)
T ss_dssp             EEEEEET--TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEEECCTTEEHHHHHTSS
T ss_pred             EEEEEEc--CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEEcCCCCCHHHHhhcC
Confidence            5777765  4456655543332221 223345667777778888998763      344567899999999999999988


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCC---eEEecCCCCcEEEcC--------CCceEEeeeecceeccccCcccccCC
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQK---IVHYDIKPESVLLDE--------NFFPKAADFGLAKLYNREHTHITSTG  142 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~---iiHrdlk~~nil~~~--------~~~~kl~dfgl~~~~~~~~~~~~~~~  142 (202)
                      .+++..+..++.|++.||.|||+   .+   ++||||||+||+++.        ++.++|+|||++........    ..
T Consensus       101 ~~~~~~~~~i~~~l~~~l~~lH~---~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~----~~  173 (271)
T 3dtc_A          101 RIPPDILVNWAVQIARGMNYLHD---EAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTK----MS  173 (271)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---SSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC---------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCCCceeecCCchHHEEEecccccccccCcceEEccCCcccccccccc----cC
Confidence            99999999999999999999999   77   999999999999985        67899999999986543222    23


Q ss_pred             CCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          143 RRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       143 ~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ..||+.|+|||.+.+..++.++|+||+|++++++++|+.||.....
T Consensus       174 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~  219 (271)
T 3dtc_A          174 AAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDG  219 (271)
T ss_dssp             --CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCH
T ss_pred             CCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            4579999999999888899999999999999999999999986543

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.97  E-value=1.7e-31  Score=215.26  Aligned_cols=174  Identities=18%  Similarity=0.265  Sum_probs=136.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHH-HHHhcccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQR-MIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.+|.|+......       ....|.. +....+|++++.      .+...+++++++++|+|...+.. 
T Consensus        38 V~~~~~~~~~~~~avK~~~~~~~-------~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~i~~~  110 (342)
T 2qr7_A           38 CKRCIHKATNMEFAVKIIDKSKR-------DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQ  110 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEETTTC-------CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTC
T ss_pred             EEEEEECCCCCEEEEEEEEcccC-------ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCCCCCcHHHHHHHc
Confidence            68899988888888887543211       1223333 333347887763      44556788999999999887754 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC----CceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN----FFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~----~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      +.+++.++..++.|++.||.|||+   .+|+||||||+||++...    +.+||+|||+++.......  ......||+.
T Consensus       111 ~~~~~~~~~~~~~qi~~al~~lH~---~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~gt~~  185 (342)
T 2qr7_A          111 KFFSEREASAVLFTITKTVEYLHA---QGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENG--LLMTPCYTAN  185 (342)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTC--CBCCSSCCSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCC--ceeccCCCcc
Confidence            469999999999999999999999   999999999999998432    3599999999986543322  1234567999


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      |+|||++.+..++.++|+||+||++|||++|++||...
T Consensus       186 y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  223 (342)
T 2qr7_A          186 FVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANG  223 (342)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSS
T ss_pred             ccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCC
Confidence            99999998877889999999999999999999999753

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.97  E-value=6.8e-31  Score=217.08  Aligned_cols=174  Identities=21%  Similarity=0.211  Sum_probs=135.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc------------cceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED------------TETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------~~~~~~~~~~~~~l~~   68 (202)
                      ||++++..+++.||.|.....       ...+..|..+....+|+|++...+            +..++++++.+ .+..
T Consensus        70 Vy~~~~~~~~~~vaiK~~~~~-------~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~  141 (420)
T 1j1b_A           70 VYQAKLCDSGELVAIKKVLQD-------KRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPE-TVYR  141 (420)
T ss_dssp             EEEEEETTTCCEEEEEEEECC-------TTSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEECCCE-EHHH
T ss_pred             EEEEEECCCCcEEEEEEeccc-------chhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehhcccc-cHHH
Confidence            789999888888887754321       123445777788889999875311            13467777775 4443


Q ss_pred             hh-----ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC-CceEEeeeecceeccccCcccccCC
Q 044746           69 LC-----KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN-FFPKAADFGLAKLYNREHTHITSTG  142 (202)
Q Consensus        69 ~~-----~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~-~~~kl~dfgl~~~~~~~~~~~~~~~  142 (202)
                      .+     ....+++..+..++.|++.||.|||+   .+|+||||||+|||++.+ +.+||+|||+++.......   ...
T Consensus       142 ~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~~---~~~  215 (420)
T 1j1b_A          142 VARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEP---NVS  215 (420)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCC---CCS
T ss_pred             HHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChhhEEEeCCCCeEEeccchhhhhcccCCC---cee
Confidence            33     24579999999999999999999999   999999999999999965 6789999999986543322   233


Q ss_pred             CCCCCcccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          143 RRRTPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       143 ~~gt~~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ..||+.|+|||++.+. .++.++||||+||++|||++|++||.+...
T Consensus       216 ~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~  262 (420)
T 1j1b_A          216 YICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSG  262 (420)
T ss_dssp             CCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             eeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCH
Confidence            5679999999998765 789999999999999999999999987654

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.97  E-value=1.8e-31  Score=218.63  Aligned_cols=179  Identities=15%  Similarity=0.173  Sum_probs=129.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcc--cccccc------ccccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADN--FSNLVG------SEDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++++.. ++.||.|+...... .......+..|..+.....  |++++.      .....+++++ +.+++|..++..
T Consensus        72 Vy~~~~~~-~~~vaiK~~~~~~~-~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~E-~~~~~L~~~l~~  148 (390)
T 2zmd_A           72 VFQVLNEK-KQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKK  148 (390)
T ss_dssp             EEEEECTT-CCEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEE-CCSEEHHHHHHH
T ss_pred             EEEEEcCC-CCEEEEEEEecccc-cHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEEe-cCCCCHHHHHHh
Confidence            68888876 66666665432211 1112234555655555543  467663      2233456666 677888887754


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       ..+++.++..++.|++.||.|||+   .+|+||||||+|||++ ++.+||+|||+++...............||+.|+|
T Consensus       149 ~~~~~~~~~~~i~~qi~~aL~~lH~---~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~a  224 (390)
T 2zmd_A          149 KKSIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMP  224 (390)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHT---TTCCCCCCCGGGEEES-SSCEEECCCSSSCCC---------CCSCCCGGGCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCccccCCCCCcCCCccC
Confidence             468999999999999999999999   9999999999999995 58899999999987654333323345678999999


Q ss_pred             CcccCC-----------CCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          152 PELWMP-----------YSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       152 Pe~~~~-----------~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      ||++.+           ..++.++|||||||++|||++|++||...
T Consensus       225 PE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~  270 (390)
T 2zmd_A          225 PEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI  270 (390)
T ss_dssp             HHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             hHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhh
Confidence            999864           36889999999999999999999999764

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=5.4e-31  Score=212.30  Aligned_cols=182  Identities=25%  Similarity=0.337  Sum_probs=140.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhc--cCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAME--MDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++++..+++.||.|+........  ......+..|.......+|++++.      ..+...++++++++ +|..++..
T Consensus        26 Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~  104 (346)
T 1ua2_A           26 VYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMET-DLEVIIKD  104 (346)
T ss_dssp             EEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECCSE-EHHHHHTT
T ss_pred             EEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceEEEEEcCCC-CHHHHHHh
Confidence            6889998888888887654332221  112334556777778888998763      34556688888886 67666654


Q ss_pred             C--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           73 N--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        73 ~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      .  .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++.......  ......||+.|+
T Consensus       105 ~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y~  179 (346)
T 1ua2_A          105 NSLVLTPSHIKAYMLMTLQGLEYLHQ---HWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNR--AYTHQVVTRWYR  179 (346)
T ss_dssp             CCSSCCSSHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCC--CCCCSCCCCTTC
T ss_pred             cCcCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEEcCCCCEEEEecccceeccCCcc--cCCccccccccc
Confidence            3  58999999999999999999999   9999999999999999999999999999986543221  223456799999


Q ss_pred             CCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          151 APELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |||.+.+. .++.++||||+||+++||++|.+||.+...
T Consensus       180 aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~  218 (346)
T 1ua2_A          180 APELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSD  218 (346)
T ss_dssp             CHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             CchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCH
Confidence            99998764 588999999999999999999999987553

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.97  E-value=1.1e-31  Score=220.19  Aligned_cols=179  Identities=16%  Similarity=0.213  Sum_probs=143.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++++..+++.||.|+.+....  ......+..|.......+|++++..        +....++++++++++|..++..
T Consensus        25 Vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~  102 (396)
T 4eut_A           25 VFRGRHKKTGDLFAIKVFNNISF--LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEE  102 (396)
T ss_dssp             EEEEEETTTCCEEEEEEECGGGG--GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEECCCTTEEHHHHTTS
T ss_pred             EEEEEECCCCcEEEEEEeccccc--cchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEEecCCCCCHHHHHHh
Confidence            78999998888898887543322  1223345567777788889987632        2244688999999999998865


Q ss_pred             CC----CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEE----cCCCceEEeeeecceeccccCcccccCCCC
Q 044746           73 NI----LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL----DENFFPKAADFGLAKLYNREHTHITSTGRR  144 (202)
Q Consensus        73 ~~----~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~----~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~  144 (202)
                      ..    +++..+..++.|++.||.|||+   .+|+||||||+||++    +.++.+||+|||+++.......   .....
T Consensus       103 ~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~---~~~~~  176 (396)
T 4eut_A          103 PSNAYGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ---FVSLY  176 (396)
T ss_dssp             GGGTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGG---SSCSS
T ss_pred             hhcccCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCc---ccccc
Confidence            32    9999999999999999999999   999999999999999    7778899999999987644322   23456


Q ss_pred             CCCcccCCcccCC--------CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          145 RTPGCEAPELWMP--------YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       145 gt~~y~aPe~~~~--------~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ||+.|+|||++.+        ..++.++||||+||++|||++|+.||....
T Consensus       177 gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~  227 (396)
T 4eut_A          177 GTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFE  227 (396)
T ss_dssp             SCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTT
T ss_pred             CCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            8999999999864        456789999999999999999999997543

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.97  E-value=1.5e-31  Score=210.27  Aligned_cols=180  Identities=19%  Similarity=0.278  Sum_probs=128.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhc--cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCK--KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~--~~   73 (202)
                      ||++++.+.   ++.|+.+.... .......|..|.......+|++++.     ......++++++++++|..++.  ..
T Consensus        40 Vy~~~~~~~---vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~  115 (289)
T 3og7_A           40 VYKGKWHGD---VAVKMLNVTAP-TPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCEGSSLYHHLHASET  115 (289)
T ss_dssp             EEEEESSSE---EEEEEESCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCCEEEHHHHHTTC--
T ss_pred             EEEEEEcCc---eEEEEEeccCC-CHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCCccEEEEEecCCCcHHHHHhhccC
Confidence            567766542   55544322211 1122345667777788888998763     3344568999999999988884  34


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++................||+.|+|||
T Consensus       116 ~~~~~~~~~i~~qi~~~L~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE  192 (289)
T 3og7_A          116 KFEMKKLIDIARQTARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPE  192 (289)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEEEECCCC------------------CCCTTCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCcccccCccceEEECCCCCEEEccceeccccccccccccccccCCCccccCch
Confidence            59999999999999999999999   999999999999999999999999999998654332222334456899999999


Q ss_pred             ccC---CCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWM---PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~---~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      .+.   +..++.++||||+|+++++|++|+.||....
T Consensus       193 ~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~  229 (289)
T 3og7_A          193 VIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNIN  229 (289)
T ss_dssp             HHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCC
T ss_pred             hhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccc
Confidence            986   5678899999999999999999999997644

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.97  E-value=2.5e-31  Score=223.92  Aligned_cols=180  Identities=20%  Similarity=0.246  Sum_probs=147.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++...+..||.|+.+...    .....|..|..+....+|+|++.      ......++++++++|+|..++..  
T Consensus       236 Vy~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~  311 (495)
T 1opk_A          236 VYEGVWKKYSLTVAVKTLKEDT----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECN  311 (495)
T ss_dssp             EEEEEEGGGTEEEEEEECCSSS----SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSC
T ss_pred             EEEEEEcCCCeEEEEEEecCcc----cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEccCCCCHHHHHHhcC
Confidence            6888888878888887754321    22345777888888889998874      34456789999999999998854  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       ..+++..+..++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+++....... .......+++.|+|
T Consensus       312 ~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~-~~~~~~~~~~~y~a  387 (495)
T 1opk_A          312 RQEVSAVVLLYMATQISSAMEYLEK---KNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTY-TAHAGAKFPIKWTA  387 (495)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCE-ECCTTCCCCGGGCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChhhEEECCCCcEEEeecccceeccCCce-eecCCCcCCcceeC
Confidence             459999999999999999999999   9999999999999999999999999999987643322 22233455789999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ||++....++.++||||||+++|||++ |+.||.....
T Consensus       388 PE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~  425 (495)
T 1opk_A          388 PESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL  425 (495)
T ss_dssp             HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred             HhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCH
Confidence            999988889999999999999999999 9999976543

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.97  E-value=1.6e-31  Score=221.43  Aligned_cols=176  Identities=21%  Similarity=0.252  Sum_probs=135.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHh------cccccccc------ccccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAA------DNFSNLVG------SEDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~------~~~~~~~~~~~~~~~~l~~   68 (202)
                      ||++++...++.||.|+.+......    ..+..|..+...      .+|++++.      ......++++++. ++|..
T Consensus       113 V~~a~~~~~~~~vAvK~~~~~~~~~----~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~  187 (429)
T 3kvw_A          113 VVKAYDHKVHQHVALKMVRNEKRFH----RQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELLS-MNLYE  187 (429)
T ss_dssp             EEEEEETTTTEEEEEEEECSCHHHH----HHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEEEECCCC-CBHHH
T ss_pred             EEEEEECCCCcEEEEEEECCccchH----HHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEEEEeccC-CCHHH
Confidence            7899999888999988764432211    122233333322      25556653      2344456777775 57777


Q ss_pred             hhccC---CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCc--eEEeeeecceeccccCcccccCCC
Q 044746           69 LCKKN---ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF--PKAADFGLAKLYNREHTHITSTGR  143 (202)
Q Consensus        69 ~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~--~kl~dfgl~~~~~~~~~~~~~~~~  143 (202)
                      ++...   .+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.  +||+|||++......     ....
T Consensus       188 ~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~~-----~~~~  259 (429)
T 3kvw_A          188 LIKKNKFQGFSLPLVRKFAHSILQCLDALHK---NRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQR-----VYTY  259 (429)
T ss_dssp             HHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---HTEECSCCSGGGEEESSTTSCCEEECCCTTCEETTCC-----CCSS
T ss_pred             HHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEccCCCcceEEeecccceecCCc-----cccc
Confidence            76543   39999999999999999999999   99999999999999998887  999999999764332     2335


Q ss_pred             CCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      .||+.|+|||++.+..++.++|||||||+++||++|++||......
T Consensus       260 ~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~  305 (429)
T 3kvw_A          260 IQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEG  305 (429)
T ss_dssp             CSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             CCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHH
Confidence            6799999999999989999999999999999999999999876543

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.97  E-value=1.5e-31  Score=212.49  Aligned_cols=182  Identities=16%  Similarity=0.177  Sum_probs=136.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHh-cccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAA-DNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.||.|+.....   .....++..|...... .+|++++.      ..+...++++++++++|..++.. 
T Consensus        29 V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  105 (316)
T 2ac3_A           29 VQTCINLITSQEYAVKIIEKQP---GHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKR  105 (316)
T ss_dssp             EEEEECSSSCCEEEEEEEECCS---SCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHH
T ss_pred             EEEEEEcCCCcEEEEEEEeeCc---chhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEcCCCCcHHHHHhcc
Confidence            6888888888888888754321   1222345555555544 57888763      34456789999999999888854 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCc---eEEeeeecceeccccCc-----ccccCCCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF---PKAADFGLAKLYNREHT-----HITSTGRR  144 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~---~kl~dfgl~~~~~~~~~-----~~~~~~~~  144 (202)
                      ..+++.++..++.|++.||.|||+   .+++||||||+||+++.++.   +||+|||++........     ........
T Consensus       106 ~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~  182 (316)
T 2ac3_A          106 RHFNELEASVVVQDVASALDFLHN---KGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPC  182 (316)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-------------------C
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCcccccccccccccc
Confidence            569999999999999999999999   99999999999999987765   99999999875432211     11122345


Q ss_pred             CCCcccCCcccCC-----CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          145 RTPGCEAPELWMP-----YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       145 gt~~y~aPe~~~~-----~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ||+.|+|||++..     ..++.++||||+||+++||++|++||.....
T Consensus       183 gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~  231 (316)
T 2ac3_A          183 GSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCG  231 (316)
T ss_dssp             CSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCC
T ss_pred             CCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCccccc
Confidence            8999999999864     4578899999999999999999999987654

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.97  E-value=2.8e-31  Score=212.83  Aligned_cols=183  Identities=22%  Similarity=0.260  Sum_probs=139.9

Q ss_pred             CCccccC-------CCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCch
Q 044746            1 MEKPRNR-------GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPF   66 (202)
Q Consensus         1 v~k~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l   66 (202)
                      ||++++.       ..+..||.|+.+...  ......++..|....... +|++++.      ..+...++++++++++|
T Consensus        51 Vy~~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L  128 (334)
T 2pvf_A           51 VVMAEAVGIDKDKPKEAVTVAVKMLKDDA--TEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNL  128 (334)
T ss_dssp             EEEEEETTCSTTCC---CEEEEEECCTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCCEEEEECCTTCBH
T ss_pred             EEEeEeccccccccccceEEEEeeeccCC--cHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccCCceEEEEECCCCCcH
Confidence            5666654       345567766644321  111223455565555555 7887763      34456789999999999


Q ss_pred             hhhhccC-----------------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecce
Q 044746           67 YLLCKKN-----------------ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK  129 (202)
Q Consensus        67 ~~~~~~~-----------------~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~  129 (202)
                      ..++...                 .+++.++..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++
T Consensus       129 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~  205 (334)
T 2pvf_A          129 REYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGLAR  205 (334)
T ss_dssp             HHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             HHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCccceEEEcCCCCEEEccccccc
Confidence            9988643                 38999999999999999999999   999999999999999999999999999998


Q ss_pred             eccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          130 LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       130 ~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ...............+|+.|+|||++.+..++.++||||+|++++||++ |+.||.....
T Consensus       206 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~  265 (334)
T 2pvf_A          206 DINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV  265 (334)
T ss_dssp             ECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCH
T ss_pred             cccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCH
Confidence            7654433333344556889999999988889999999999999999999 9999976543

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.97  E-value=4.3e-31  Score=206.75  Aligned_cols=181  Identities=20%  Similarity=0.243  Sum_probs=144.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||++++..+++.|+.|+....... ......+..|.......+|++++.      ..+...++++++++++|...+. ..
T Consensus        22 V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~  100 (284)
T 3kk8_A           22 VRRCVHKTTGLEFAAKIINTKKLS-ARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVARE  100 (284)
T ss_dssp             EEEEEETTTCCEEEEEEEEGGGCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHS
T ss_pred             EEEEEEcCCCceEEEEEeecccCC-HHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEEecCCCCCHHHHHHhcC
Confidence            688888888888888875433221 122344666777777888898763      3444568899999999866654 45


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCc---eEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF---PKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~---~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.   ++|+|||++........   .....||+.|+
T Consensus       101 ~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~~~~~y~  174 (284)
T 3kk8_A          101 FYSEADASHCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA---WHGFAGTPGYL  174 (284)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCB---CCCSCSCGGGC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCcc---ccCCCCCcCCc
Confidence            69999999999999999999999   99999999999999976554   99999999986544322   23456799999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |||.+.+..++.++||||+|+++++|++|+.||.....
T Consensus       175 aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~  212 (284)
T 3kk8_A          175 SPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ  212 (284)
T ss_dssp             CHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             CchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCch
Confidence            99999998999999999999999999999999976543

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.97  E-value=1.3e-31  Score=211.02  Aligned_cols=181  Identities=18%  Similarity=0.263  Sum_probs=139.6

Q ss_pred             CCccc----cCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc--------ccceEEEEEccCCchhh
Q 044746            1 MEKPR----NRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE--------DTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------~~~~~~~~~~~~~~l~~   68 (202)
                      ||+++    +...++.||.|+......   .....+..|.......+|++++...        ....++++++++++|..
T Consensus        26 V~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~  102 (295)
T 3ugc_A           26 VEMCRYDPLQDNTGEVVAVKKLQHSTE---EHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRD  102 (295)
T ss_dssp             EEEEEECTTCSSCCEEEEEEEESCCCH---HHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCEEEEECCTTCBHHH
T ss_pred             EEEEEEecccCCCCcEEEEEEcccCCH---HHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceEEEEEeCCCCCHHH
Confidence            56666    667778888776543221   2234566777788888899887422        23568999999999999


Q ss_pred             hhccC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc-cccCCCCC
Q 044746           69 LCKKN--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-ITSTGRRR  145 (202)
Q Consensus        69 ~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~g  145 (202)
                      ++...  .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||++......... .......+
T Consensus       103 ~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~  179 (295)
T 3ugc_A          103 YLQKHKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGES  179 (295)
T ss_dssp             HHHHCGGGCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCCSCC-------------CTTC
T ss_pred             HHHhcccccCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCC
Confidence            88654  49999999999999999999999   99999999999999999999999999999865433221 12233446


Q ss_pred             CCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          146 TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       146 t~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +..|+|||.+.+..++.++||||+|++++||++|..|+....
T Consensus       180 ~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~  221 (295)
T 3ugc_A          180 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP  221 (295)
T ss_dssp             GGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHH
T ss_pred             ccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCCh
Confidence            778999999998899999999999999999999999987543

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.97  E-value=2.2e-31  Score=219.55  Aligned_cols=181  Identities=10%  Similarity=0.032  Sum_probs=132.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccc-------------------ccc--------cc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSN-------------------LVG--------SE--   51 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~i~--------~~--   51 (202)
                      ||++++...++.||+|+.+............|..|........|..                   +.+        ..  
T Consensus        94 Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (413)
T 3dzo_A           94 YLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDER  173 (413)
T ss_dssp             EEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEEECCC------------
T ss_pred             EEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhcccCCCCccccccCCCc
Confidence            7999999888899988766433333333344545544444443310                   000        00  


Q ss_pred             ---ccceEEEEEccCCchhhhhc--------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCce
Q 044746           52 ---DTETYIKGFLAMGPFYLLCK--------KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFP  120 (202)
Q Consensus        52 ---~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~  120 (202)
                         ....++.....+++|..++.        ...+++..+..++.|++.||.|||+   ++|+||||||+|||++.++.+
T Consensus       174 ~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~iiHrDiKp~NILl~~~~~~  250 (413)
T 3dzo_A          174 DMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH---YGLVHTYLRPVDIVLDQRGGV  250 (413)
T ss_dssp             ---CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCE
T ss_pred             cccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcccceEEEecCCeE
Confidence               12234444556778877773        3447888999999999999999999   999999999999999999999


Q ss_pred             EEeeeecceeccccCcccccCCCCCCCcccCCccc----------CCCCCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          121 KAADFGLAKLYNREHTHITSTGRRRTPGCEAPELW----------MPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       121 kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~----------~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      ||+|||+++.....     .....| +.|+|||++          ....++.++|||||||++|||++|+.||.......
T Consensus       251 kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~  324 (413)
T 3dzo_A          251 FLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALG  324 (413)
T ss_dssp             EECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGS
T ss_pred             EEEeccceeecCCc-----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhh
Confidence            99999999865432     234566 999999999          55568899999999999999999999998766543

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.5e-31  Score=215.31  Aligned_cols=179  Identities=15%  Similarity=0.171  Sum_probs=126.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccc--ccccc------ccccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNF--SNLVG------SEDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~------~~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++++.. ++.||.|+..... ........+..|........|  ++++.      ......++++ +.+++|..++..
T Consensus        25 Vy~~~~~~-~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e-~~~~~L~~~l~~  101 (343)
T 3dbq_A           25 VFQVLNEK-KQIYAIKYVNLEE-ADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKK  101 (343)
T ss_dssp             EEEEECTT-SCEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEC-CCSEEHHHHHHH
T ss_pred             EEEEEeCC-CCEEEEEEeeccc-cchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEEe-CCCCCHHHHHHh
Confidence            67888765 5556655433221 111122345556665555544  66653      2334456666 677888887755


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       ..+++.++..++.|++.||.|||+   .+|+||||||+|||++ ++.+||+|||+++...............||+.|+|
T Consensus       102 ~~~~~~~~~~~i~~qi~~al~~lH~---~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~a  177 (343)
T 3dbq_A          102 KKSIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMP  177 (343)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC------------CCCCSSCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCcceEEEE-CCcEEEeecccccccCcccccccCCCCcCCcCcCC
Confidence             469999999999999999999999   9999999999999997 67899999999987654433333345678999999


Q ss_pred             CcccCC-----------CCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          152 PELWMP-----------YSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       152 Pe~~~~-----------~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      ||++.+           ..++.++||||+||+++||++|+.||...
T Consensus       178 PE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  223 (343)
T 3dbq_A          178 PEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI  223 (343)
T ss_dssp             HHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             HHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhh
Confidence            999854           67889999999999999999999999753

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.97  E-value=2.4e-31  Score=206.94  Aligned_cols=179  Identities=20%  Similarity=0.307  Sum_probs=141.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++++..+.. ||.|+......    ....+..|.......+|++++.      ..+...++++++++++|..++... 
T Consensus        26 V~~~~~~~~~~-vavK~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  100 (269)
T 4hcu_A           26 VHLGYWLNKDK-VAIKTIREGAM----SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQR  100 (269)
T ss_dssp             EEEEEETTTEE-EEEEEECTTSB----CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTTT
T ss_pred             EEEEEecCCCe-EEEEEeccccc----CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCCCCcHHHHHHhcC
Confidence            67888776555 44444322211    1234667777788888998763      344557899999999999988543 


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                       .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++........ .......+|+.|+||
T Consensus       101 ~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aP  176 (269)
T 4hcu_A          101 GLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY-TSSTGTKFPVKWASP  176 (269)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHH-HSTTSTTCCGGGCCH
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHh---CCeecCCcchheEEEcCCCCEEecccccccccccccc-ccccCcccccccCCH
Confidence             49999999999999999999999   9999999999999999999999999999986543321 122334567889999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |.+.+..++.++|+||+|+++++|++ |+.||.....
T Consensus       177 E~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~  213 (269)
T 4hcu_A          177 EVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN  213 (269)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH
T ss_pred             HHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCH
Confidence            99988889999999999999999999 9999976544

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=9.4e-31  Score=213.63  Aligned_cols=175  Identities=18%  Similarity=0.177  Sum_probs=138.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc----------------------------
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED----------------------------   52 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------------------------   52 (202)
                      ||++++..+++.||.|.....       ......|..+....+|+|++...+                            
T Consensus        23 V~~a~~~~~~~~vAiK~~~~~-------~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (383)
T 3eb0_A           23 VCEVFDIESGKRFALKKVLQD-------PRYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNG   95 (383)
T ss_dssp             EEEEEETTTCCEEEEEEEECC-------TTSCCHHHHHHTTCCCTTBCCEEEEEEEC-----------------------
T ss_pred             EEEEEECCCCCEEEEEEEecC-------cchHHHHHHHHHHcCCCCccchhheeeecCcccccccccccccccccccccc
Confidence            689999888888888754322       223446777778888998874221                            


Q ss_pred             ----------------cceEEEEEccCCchhhhhc-----cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCc
Q 044746           53 ----------------TETYIKGFLAMGPFYLLCK-----KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPES  111 (202)
Q Consensus        53 ----------------~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~n  111 (202)
                                      +..+++++++ ++|...+.     ...+++..+..++.|++.||.|||+   .+|+||||||+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~gi~H~Dikp~N  171 (383)
T 3eb0_A           96 VNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHS---LGICHRDIKPQN  171 (383)
T ss_dssp             --------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGG
T ss_pred             cccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CcCccCccCHHH
Confidence                            2447778887 46555443     3579999999999999999999999   999999999999


Q ss_pred             EEEc-CCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          112 VLLD-ENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       112 il~~-~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |+++ .++.+||+|||+++.......   .....||+.|+|||.+.+. .++.++||||+||+++||++|++||.+....
T Consensus       172 il~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~  248 (383)
T 3eb0_A          172 LLVNSKDNTLKLCDFGSAKKLIPSEP---SVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSI  248 (383)
T ss_dssp             EEEETTTTEEEECCCTTCEECCTTSC---CCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             EEEcCCCCcEEEEECCCCcccCCCCC---CcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCChH
Confidence            9997 688999999999986543322   2334669999999998765 4899999999999999999999999876543

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.97  E-value=1.2e-30  Score=203.76  Aligned_cols=178  Identities=16%  Similarity=0.253  Sum_probs=143.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||++++...+..++.|......   .....++..|.......+|++++.      ......++++++++++|..++. ..
T Consensus        25 V~~~~~~~~~~~~a~k~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~  101 (277)
T 3f3z_A           25 VKIAVQKGTRIRRAAKKIPKYF---VEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVHKR  101 (277)
T ss_dssp             EEEEEETTTCCEEEEEEEEGGG---CSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHC
T ss_pred             EEEEEeCCCCcEEEEEeehhhc---cchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEeccCCCcHHHHHHHcC
Confidence            6888888888777776543322   223445677777788888998763      3445578899999999977664 45


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEE---cCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~---~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      .+++..+..++.|++.||.|||+   .+++||||||+||++   +.++.++|+|||++........   .....||+.|+
T Consensus       102 ~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~---~~~~~~t~~y~  175 (277)
T 3f3z_A          102 VFRESDAARIMKDVLSAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKM---MRTKVGTPYYV  175 (277)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSC---BCCCCSCTTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccc---hhccCCCCCcc
Confidence            68999999999999999999999   999999999999999   7889999999999986543322   23346799999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |||.+.+. ++.++|+||+|+++++|++|+.||.....
T Consensus       176 aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~  212 (277)
T 3f3z_A          176 SPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTD  212 (277)
T ss_dssp             CHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             ChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCH
Confidence            99998764 89999999999999999999999976543

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.97  E-value=8.6e-31  Score=220.48  Aligned_cols=181  Identities=20%  Similarity=0.297  Sum_probs=144.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh-ccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC-KKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~-~~~   73 (202)
                      ||++++..++..+|.|+.+..... ......+..|..+....+|+|++.      .....+++++++++|+|...+ ...
T Consensus        53 V~~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~  131 (494)
T 3lij_A           53 VLLCRDKVTHVERAIKIIRKTSVS-TSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHRM  131 (494)
T ss_dssp             EEEEEETTTCCEEEEEEEEC------CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHS
T ss_pred             EEEEEECCCCcEEEEEEEeccccC-chHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCcHHHHHHHcC
Confidence            688999888888888875543222 222445667888888889998874      344566889999999997766 446


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC---CCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~---~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      .+++..+..++.|++.||.|||+   .+|+||||||+||+++.   ++.+||+|||++........   .....||+.|+
T Consensus       132 ~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~---~~~~~gt~~y~  205 (494)
T 3lij_A          132 KFNEVDAAVIIKQVLSGVTYLHK---HNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKK---MKERLGTAYYI  205 (494)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBC---BCCCCSCTTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCcc---ccccCCCcCee
Confidence            79999999999999999999999   99999999999999975   45599999999987654322   23456899999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |||++.+ .++.++||||+||++|+|++|++||.+....
T Consensus       206 aPE~l~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~  243 (494)
T 3lij_A          206 APEVLRK-KYDEKCDVWSIGVILFILLAGYPPFGGQTDQ  243 (494)
T ss_dssp             CHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             CHHHHcc-cCCCchhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            9999864 6899999999999999999999999875543

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.97  E-value=1.2e-30  Score=204.21  Aligned_cols=182  Identities=18%  Similarity=0.273  Sum_probs=143.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccC---CcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMD---KPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++++..+++.++.|+.+........   ....+..|.......+|++++.      ......++++++++++|..++.
T Consensus        21 V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~  100 (283)
T 3bhy_A           21 VRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLA  100 (283)
T ss_dssp             EEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHH
T ss_pred             EEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEEEEEeecCCCcHHHHHH
Confidence            688999888888887765443222111   2344666777777888898763      3445668899999999988875


Q ss_pred             c-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC----ceEEeeeecceeccccCcccccCCCCCC
Q 044746           72 K-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF----FPKAADFGLAKLYNREHTHITSTGRRRT  146 (202)
Q Consensus        72 ~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~----~~kl~dfgl~~~~~~~~~~~~~~~~~gt  146 (202)
                      . ..+++.++..++.|++.||.|||+   .+++||||||+||+++.++    .++|+|||++........   .....|+
T Consensus       101 ~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~  174 (283)
T 3bhy_A          101 EKESLTEDEATQFLKQILDGVHYLHS---KRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNE---FKNIFGT  174 (283)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC-----------CCC
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCChHHEEEecCCCCCCceEEEecccceeccCCCc---ccccCCC
Confidence            4 569999999999999999999999   9999999999999998776    799999999986543322   2234579


Q ss_pred             CcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       147 ~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +.|+|||++.+..++.++|+||+|+++++|++|+.||.....
T Consensus       175 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  216 (283)
T 3bhy_A          175 PEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETK  216 (283)
T ss_dssp             GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSH
T ss_pred             cCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcch
Confidence            999999999988999999999999999999999999976543

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.97  E-value=3.1e-31  Score=212.34  Aligned_cols=181  Identities=15%  Similarity=0.199  Sum_probs=135.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.||.|+.+.... .......+..|.......+|++++.      ......+++++++ ++|..++.. .
T Consensus        50 V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~  127 (329)
T 3gbz_A           50 VYKAIDTVTNETVAIKRIRLEHE-EEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIFEYAE-NDLKKYMDKNP  127 (329)
T ss_dssp             EEEEEETTTTEEEEEEECCCCC---------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHHCT
T ss_pred             EEEEEECCCCceEEEEEEccccc-ccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEEEecCC-CCHHHHHhhcC
Confidence            68899888888888887643322 2223445667777788888998774      3445568888887 477777754 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc-----CCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD-----ENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~-----~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      .+++..+..++.|++.||.|||+   .+|+||||||+||+++     ..+.+||+|||+++.......  ......||+.
T Consensus       128 ~~~~~~~~~i~~ql~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~  202 (329)
T 3gbz_A          128 DVSMRVIKSFLYQLINGVNFCHS---RRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIR--QFTHEIITLW  202 (329)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-------------CCT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCccc--ccCCCcCCcc
Confidence            69999999999999999999999   9999999999999994     455699999999986543222  1233467999


Q ss_pred             ccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          149 CEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       149 y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |+|||++.+. .++.++||||+||+++||++|++||.....
T Consensus       203 y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~  243 (329)
T 3gbz_A          203 YRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSE  243 (329)
T ss_dssp             TCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             ccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCH
Confidence            9999999874 489999999999999999999999976554

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.97  E-value=3.1e-31  Score=210.19  Aligned_cols=183  Identities=18%  Similarity=0.189  Sum_probs=139.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||++++..+++.||.|+....... ......+..|.......+|++++.      ..+...++++++++++|..+.. ..
T Consensus        19 V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~   97 (311)
T 4agu_A           19 VFKCRNRDTGQIVAIKKFLESEDD-PVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQR   97 (311)
T ss_dssp             EEEEEETTTCCEEEEEEECCCCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHTSS
T ss_pred             EEEEEeCCCCcEEEEEEeeccccc-hHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEEeCCCchHHHHHhhhc
Confidence            688999888888887754322111 111234556777777788898763      3445568899999999888775 44


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.........  .....||+.|+|||
T Consensus        98 ~~~~~~~~~i~~~l~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE  172 (311)
T 4agu_A           98 GVPEHLVKSITWQTLQAVNFCHK---HNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDY--YDDEVATRWYRSPE  172 (311)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECC--------------GGGCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcccc--cCCCcCCccccChH
Confidence            69999999999999999999999   99999999999999999999999999999875433221  23346799999999


Q ss_pred             ccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          154 LWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       154 ~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      .+.+ ..++.++|+||+|+++++|++|++||.+....
T Consensus       173 ~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  209 (311)
T 4agu_A          173 LLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDV  209 (311)
T ss_dssp             HHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             HHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHH
Confidence            9876 56899999999999999999999999876543

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.97  E-value=2.3e-31  Score=208.34  Aligned_cols=182  Identities=18%  Similarity=0.215  Sum_probs=131.5

Q ss_pred             CCccccCCC---cceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGS---TRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++++...   ...|+.|..+...  ......++..|.......+|++++.     ..+..+++++++++++|..++..
T Consensus        31 Vy~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~lv~e~~~~~~L~~~l~~  108 (281)
T 1mp8_A           31 VHQGIYMSPENPALAVAIKTCKNCT--SDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQV  108 (281)
T ss_dssp             EEEEEECCC--CCEEEEEEECTTTT--SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEEEECCTTEEHHHHHHH
T ss_pred             EEEEEEecCCCCceEEEEEeccccC--CHHHHHHHHHHHHHHHhCCCCccceEEEEEccCccEEEEecCCCCCHHHHHHh
Confidence            577776543   3456665543321  1122334667777777888998764     33455688999999999998864


Q ss_pred             C--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           73 N--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        73 ~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      .  .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++........ ......+++.|+
T Consensus       109 ~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~  184 (281)
T 1mp8_A          109 RKYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-KASKGKLPIKWM  184 (281)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECC--------------------CCGGGC
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecccccHHHEEECCCCCEEECccccccccCccccc-ccccCCCccccc
Confidence            4  59999999999999999999999   99999999999999999999999999999865433221 122334578899


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |||.+.+..++.++|+||+|++++||++ |.+||.....
T Consensus       185 aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~  223 (281)
T 1mp8_A          185 APESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN  223 (281)
T ss_dssp             CHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG
T ss_pred             ChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCH
Confidence            9999988889999999999999999997 9999986544

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.97  E-value=2.2e-31  Score=222.05  Aligned_cols=179  Identities=22%  Similarity=0.305  Sum_probs=142.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhccC--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKKN--   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~~--   73 (202)
                      ||+++...+. .||+|+.+...    .....|..|..+....+|++++.     ......++++++++|+|..++...  
T Consensus       204 V~~~~~~~~~-~vavK~~~~~~----~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~  278 (454)
T 1qcf_A          204 VWMATYNKHT-KVAVKTMKPGS----MSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAKGSLLDFLKSDEG  278 (454)
T ss_dssp             EEEEEETTTE-EEEEEEECTTS----BCHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEECCCTTCBHHHHHHSHHH
T ss_pred             EEEEEECCcc-EEEEEEecCCC----ccHHHHHHHHHHHhhCCCCCEeeEEEEEeCCccEEEEeecCCCcHHHHHHhccC
Confidence            6777776544 45555433221    22445777888888889998774     234456899999999999988643  


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                       .+++..+..++.|++.||.|||+   ++++||||||+|||++.++.+||+|||+++....... .......+++.|+||
T Consensus       279 ~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~-~~~~~~~~~~~y~aP  354 (454)
T 1qcf_A          279 SKQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEY-TAREGAKFPIKWTAP  354 (454)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHH-HTTCSSSSCGGGSCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCce-eccCCCcccccccCH
Confidence             68999999999999999999999   9999999999999999999999999999986543221 112334457889999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |++....++.++||||||+++|||++ |+.||.+...
T Consensus       355 E~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~  391 (454)
T 1qcf_A          355 EAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN  391 (454)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH
T ss_pred             HHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCH
Confidence            99988889999999999999999999 9999976543

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.97  E-value=4.2e-31  Score=209.78  Aligned_cols=185  Identities=16%  Similarity=0.174  Sum_probs=133.7

Q ss_pred             CCccccCC---CcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc-----------cceEEEEEccCCch
Q 044746            1 MEKPRNRG---STRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED-----------TETYIKGFLAMGPF   66 (202)
Q Consensus         1 v~k~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~~~~~~~l   66 (202)
                      ||+++...   .+..||.|+.+.... .......+..|.......+|++++...+           ...++++++++++|
T Consensus        50 V~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~v~e~~~~~~L  128 (313)
T 3brb_A           50 VMEGNLKQEDGTSLKVAVKTMKLDNS-SQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDL  128 (313)
T ss_dssp             EEEEEEECTTSCEEEEEEEEC---CC-CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-------CEEEEEECCTTCBH
T ss_pred             EEEEEEeccCCceeEEEEEEEecccc-chhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccccCCcccEEEEecccCCCH
Confidence            46665443   344566665432211 1112234667777778888998874322           23788999999999


Q ss_pred             hhhh-------ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccc
Q 044746           67 YLLC-------KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT  139 (202)
Q Consensus        67 ~~~~-------~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~  139 (202)
                      ..++       ....+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||++...........
T Consensus       129 ~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~  205 (313)
T 3brb_A          129 HTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN---RNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQ  205 (313)
T ss_dssp             HHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHT---TTCCCCCCSGGGEEECTTSCEEECSCSCC-----------
T ss_pred             HHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCcEEEeecCcceecccccccCc
Confidence            8887       23459999999999999999999999   9999999999999999999999999999986544332223


Q ss_pred             cCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhcc
Q 044746          140 STGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEISE  189 (202)
Q Consensus       140 ~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~~  189 (202)
                      .....+++.|+|||.+.+..++.++|+||+|+++++|++ |.+||......
T Consensus       206 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~  256 (313)
T 3brb_A          206 GRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNH  256 (313)
T ss_dssp             -----CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG
T ss_pred             ccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHH
Confidence            334456889999999998899999999999999999999 99999765543

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.97  E-value=4.1e-31  Score=215.02  Aligned_cols=179  Identities=17%  Similarity=0.170  Sum_probs=133.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc------------ccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE------------DTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------~~~~~~~~~~~~~~l~~   68 (202)
                      ||++++...++.||.|+...... ......++..|.......+|++++...            ....++++++.+ +|..
T Consensus        41 V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~  118 (371)
T 2xrw_A           41 VCAAYDAILERNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDA-NLCQ  118 (371)
T ss_dssp             EEEEEETTTTEEEEEEEEECTTS-SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCEEEEEEECCSE-EHHH
T ss_pred             EEEEEECCCCceEEEEEeccccC-ChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccceEEEEEcCCC-CHHH
Confidence            68888888888888876543211 112223455677777788899877421            134677888874 6666


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      .+. ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+++......   ......||+.
T Consensus       119 ~~~-~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~  191 (371)
T 2xrw_A          119 VIQ-MELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF---MMTPYVVTRY  191 (371)
T ss_dssp             HHH-SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCCCC-------------------CT
T ss_pred             HHh-hccCHHHHHHHHHHHHHHHHHHHH---CCeecccCCHHHEEEcCCCCEEEEEeeccccccccc---ccCCceecCC
Confidence            664 468999999999999999999999   999999999999999999999999999998654322   1233567999


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |+|||++.+..++.++||||+||+++||++|+.||.+...
T Consensus       192 y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~  231 (371)
T 2xrw_A          192 YRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH  231 (371)
T ss_dssp             TCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             ccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            9999999998999999999999999999999999987554

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.97  E-value=1.9e-31  Score=213.56  Aligned_cols=176  Identities=17%  Similarity=0.218  Sum_probs=130.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHH--HHHhcccccccccc-----------ccceEEEEEccCCchh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQR--MIAADNFSNLVGSE-----------DTETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~-----------~~~~~~~~~~~~~~l~   67 (202)
                      ||+++.  .++.||.|+.......      .+..+..  .....+|++++...           ....++++++++|+|.
T Consensus        29 Vy~~~~--~~~~vavK~~~~~~~~------~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~  100 (336)
T 3g2f_A           29 VYKGSL--DERPVAVKVFSFANRQ------NFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLX  100 (336)
T ss_dssp             EEEEEE--TTEEEEEEEEEGGGHH------HHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEECCCTTCBHH
T ss_pred             EEEEEE--CCeEEEEEEeeccchh------hHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEEEecCCCCcHH
Confidence            577755  4566776664332211      1111222  22346777765422           1235889999999999


Q ss_pred             hhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCC---------CeEEecCCCCcEEEcCCCceEEeeeecceeccccCc--
Q 044746           68 LLCKKNILGFGQLREIEVSTSKGIAYLHEECRQ---------KIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT--  136 (202)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~---------~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~--  136 (202)
                      .++.....++..+..++.|++.||.|||+   .         +|+||||||+||+++.++.+||+|||+++.......  
T Consensus       101 ~~l~~~~~~~~~~~~i~~qi~~~L~~LH~---~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~  177 (336)
T 3g2f_A          101 KYLSLHTSDWVSSCRLAHSVTRGLAYLHT---ELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVR  177 (336)
T ss_dssp             HHHHHCCBCHHHHHHHHHHHHHHHHHHHC---CBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC-
T ss_pred             HHHhhcccchhHHHHHHHHHHHHHHHHHh---hhccccccccceeecccccceEEEcCCCcEEEeeccceeecccccccC
Confidence            99988889999999999999999999998   7         999999999999999999999999999987643221  


Q ss_pred             ----ccccCCCCCCCcccCCcccCC-------CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          137 ----HITSTGRRRTPGCEAPELWMP-------YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       137 ----~~~~~~~~gt~~y~aPe~~~~-------~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                          ........||+.|+|||++.+       ..++.++|||||||++|||++|..||....
T Consensus       178 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~  239 (336)
T 3g2f_A          178 PGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGE  239 (336)
T ss_dssp             --------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTS
T ss_pred             ccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCcc
Confidence                112234568999999999986       345678999999999999999977765443

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.97  E-value=1.5e-31  Score=212.14  Aligned_cols=182  Identities=21%  Similarity=0.277  Sum_probs=140.2

Q ss_pred             CCccc-----cCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc-------ccccceEEEEEccCCchh
Q 044746            1 MEKPR-----NRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG-------SEDTETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~-------~~~~~~~~~~~~~~~~l~   67 (202)
                      ||+++     +...++.||.|+.+.....  .....+..|....... +|++++.       .+....++++++++++|.
T Consensus        43 Vy~~~~~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~~lv~e~~~~~~L~  120 (316)
T 2xir_A           43 VIEADAFGIDKTATCRTVAVKMLKEGATH--SEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLS  120 (316)
T ss_dssp             EEEEEEESSSSTTCEEEEEEEEECTTCCH--HHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEEECCTTEEHH
T ss_pred             EEEEEEecCCccccceEEEEEecccCCCc--HHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCCceEEEEEcCCCCcHH
Confidence            56665     3456677777765432111  1123455555555554 6787653       233467889999999999


Q ss_pred             hhhccCC-----------------CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746           68 LLCKKNI-----------------LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus        68 ~~~~~~~-----------------~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      .++....                 +++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++.
T Consensus       121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~  197 (316)
T 2xir_A          121 TYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARD  197 (316)
T ss_dssp             HHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCGGGSC
T ss_pred             HHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHh---CCcccccCccceEEECCCCCEEECCCccccc
Confidence            9886543                 8899999999999999999999   9999999999999999999999999999986


Q ss_pred             ccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          131 YNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       131 ~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      ..............||+.|+|||++.+..++.++||||+|++++||++ |+.||....
T Consensus       198 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~  255 (316)
T 2xir_A          198 IYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK  255 (316)
T ss_dssp             TTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             cccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccc
Confidence            544333333344556889999999988889999999999999999998 999997654

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.97  E-value=1.1e-30  Score=220.26  Aligned_cols=182  Identities=20%  Similarity=0.294  Sum_probs=144.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhc----------cCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAME----------MDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMG   64 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~   64 (202)
                      ||++++..++..+|.|+........          ......+..|..+....+|+|++.      .....++++++++++
T Consensus        52 V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~gg  131 (504)
T 3q5i_A           52 VLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGG  131 (504)
T ss_dssp             EEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred             EEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEecCCCC
Confidence            6889998888888887754432111          122334666777788889998773      445567899999999


Q ss_pred             chhhhh-ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC---ceEEeeeecceeccccCccccc
Q 044746           65 PFYLLC-KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF---FPKAADFGLAKLYNREHTHITS  140 (202)
Q Consensus        65 ~l~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~---~~kl~dfgl~~~~~~~~~~~~~  140 (202)
                      +|...+ ....+++..+..++.|++.||.|||+   .+|+||||||+||+++.++   .+||+|||++........   .
T Consensus       132 ~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~---~  205 (504)
T 3q5i_A          132 ELFEQIINRHKFDECDAANIMKQILSGICYLHK---HNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYK---L  205 (504)
T ss_dssp             BHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTTSC---B
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCCCc---c
Confidence            997766 44679999999999999999999999   9999999999999998765   699999999987654322   2


Q ss_pred             CCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          141 TGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       141 ~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      ....||+.|+|||++.+ .++.++||||+||++|+|++|++||.+....
T Consensus       206 ~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~  253 (504)
T 3q5i_A          206 RDRLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLCGYPPFGGQNDQ  253 (504)
T ss_dssp             CCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             ccccCCcCCCCHHHhcc-CCCchHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            34568999999999874 6899999999999999999999999875543

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.97  E-value=6.5e-31  Score=220.77  Aligned_cols=180  Identities=21%  Similarity=0.309  Sum_probs=144.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh-ccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC-KKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~-~~~   73 (202)
                      ||++++..+++.||.|+...... .......+..|..+....+|+|++.      ......++++++.+++|...+ ...
T Consensus        38 V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~  116 (486)
T 3mwu_A           38 VLKCKDRITQQEYAVKVINKASA-KNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRK  116 (486)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHH-BCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHS
T ss_pred             EEEEEECCCCCEEEEEEEecccc-cchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEEcCCCCcHHHHHHhcC
Confidence            78999988888888887544322 2223445667777888889998874      344556888999999997766 456


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc---CCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD---ENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~---~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      .+++..+..++.|++.||.|||+   .+|+||||||+||+++   .++.+||+|||+++.......   .....||+.|+
T Consensus       117 ~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~  190 (486)
T 3mwu_A          117 RFSEHDAARIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK---MKDRIGTAYYI  190 (486)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC-------CCTTGGGGC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCc---cCCCcCCCCCC
Confidence            79999999999999999999999   9999999999999995   456799999999976543321   23456899999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |||++.+ .++.++||||+||++|+|++|++||.+...
T Consensus       191 aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~  227 (486)
T 3mwu_A          191 APEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNE  227 (486)
T ss_dssp             CGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             CHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            9999876 589999999999999999999999976554

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.97  E-value=5.1e-31  Score=214.11  Aligned_cols=181  Identities=19%  Similarity=0.269  Sum_probs=141.4

Q ss_pred             CCccccCCCcceeehhhhchhhhh-----ccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAM-----EMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~   68 (202)
                      ||++++..+++.||+|+.+.....     ..+....+..|....... +|++++.      ..+...++++++++++|..
T Consensus       110 Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~  189 (365)
T 2y7j_A          110 VRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRKGELFD  189 (365)
T ss_dssp             EEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSSEEEEEECCCTTCBHHH
T ss_pred             EEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCCEEEEEEEeCCCCcHHH
Confidence            789999888888888875432210     011122344555555554 7887663      3455678899999999988


Q ss_pred             hhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCC
Q 044746           69 LCKK-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP  147 (202)
Q Consensus        69 ~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~  147 (202)
                      ++.. ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++........   .....||+
T Consensus       190 ~l~~~~~l~~~~~~~i~~qi~~~L~~LH~---~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~~~~---~~~~~gt~  263 (365)
T 2y7j_A          190 YLTEKVALSEKETRSIMRSLLEAVSFLHA---NNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEK---LRELCGTP  263 (365)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCC---BCCCCSCG
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEEEecCcccccCCCcc---cccCCCCC
Confidence            8754 469999999999999999999999   9999999999999999999999999999987654322   23456899


Q ss_pred             cccCCcccCC------CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          148 GCEAPELWMP------YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       148 ~y~aPe~~~~------~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      .|+|||++.+      ..++.++||||+||++|+|++|+.||....
T Consensus       264 ~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~  309 (365)
T 2y7j_A          264 GYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRR  309 (365)
T ss_dssp             GGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             CccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCC
Confidence            9999999853      357889999999999999999999997643

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.97  E-value=4.9e-31  Score=215.23  Aligned_cols=176  Identities=21%  Similarity=0.238  Sum_probs=133.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc--------ccccccc----------ccccceEEEEEcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD--------NFSNLVG----------SEDTETYIKGFLA   62 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~----------~~~~~~~~~~~~~   62 (202)
                      ||++++..+++.||.|+.+.....    ...+..|.......        +|++++.          .+....++++++.
T Consensus        53 V~~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~lv~e~~~  128 (397)
T 1wak_A           53 VWLSWDIQGKKFVAMKVVKSAEHY----TETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLG  128 (397)
T ss_dssp             EEEEEETTTTEEEEEEEECSCHHH----HHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEEEEEECCCC
T ss_pred             EEEEEecCCCeEEEEEEEecCCcc----hHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceEEEEEeccC
Confidence            789999888999998876433221    12233343333332        2555543          2334567778885


Q ss_pred             CCchhhhhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCCC-CeEEecCCCCcEEEcCCC---------------------
Q 044746           63 MGPFYLLCKK--NILGFGQLREIEVSTSKGIAYLHEECRQ-KIVHYDIKPESVLLDENF---------------------  118 (202)
Q Consensus        63 ~~~l~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~-~iiHrdlk~~nil~~~~~---------------------  118 (202)
                      ++.+..+...  ..+++..+..++.|++.||.|||+   + +|+||||||+|||++.++                     
T Consensus       129 ~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~---~~givHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~  205 (397)
T 1wak_A          129 HHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHT---KCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPP  205 (397)
T ss_dssp             CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH---TTCEECCCCSGGGEEECCCHHHHHHHHHHHC----------
T ss_pred             ccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCC
Confidence            4444444433  459999999999999999999999   8 999999999999998765                     


Q ss_pred             ----------------------------ceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHH
Q 044746          119 ----------------------------FPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFG  170 (202)
Q Consensus       119 ----------------------------~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G  170 (202)
                                                  .++|+|||++......     .....||+.|+|||++.+..++.++||||+|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG  280 (397)
T 1wak_A          206 SGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-----FTEDIQTRQYRSLEVLIGSGYNTPADIWSTA  280 (397)
T ss_dssp             -----------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-----SCSCCSCGGGCCHHHHHTSCCCTHHHHHHHH
T ss_pred             CCCccccCCcccccccccccccccccccceEecccccccccccc-----CccCCCCCcccCChhhcCCCCCcHHHHHHHH
Confidence                                        7999999999875432     2334679999999999998999999999999


Q ss_pred             HHHHHHHcCCCCCcchhc
Q 044746          171 MLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       171 ~~l~el~~g~~p~~~~~~  188 (202)
                      |++|||++|+.||.....
T Consensus       281 ~il~elltg~~pf~~~~~  298 (397)
T 1wak_A          281 CMAFELATGDYLFEPHSG  298 (397)
T ss_dssp             HHHHHHHHSSCSCCCCCC
T ss_pred             HHHHHHhhCCCCCCCCcc
Confidence            999999999999986543

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.97  E-value=2.2e-30  Score=206.93  Aligned_cols=171  Identities=20%  Similarity=0.256  Sum_probs=138.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcc-ccccccc--------cccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADN-FSNLVGS--------EDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~--------~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++++..+++.||.|+.+..      ....+..|..+..... |++++..        .....++++++++++|..+..
T Consensus        52 V~~~~~~~~~~~vavK~~~~~------~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~  125 (330)
T 3nsz_A           52 VFEAINITNNEKVVVKILKPV------KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ  125 (330)
T ss_dssp             EEEEEETTTCCEEEEEEECSC------CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECCCCCCHHHHGG
T ss_pred             EEEEEECCCCcEEEEEEeccc------chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEeccCchhHHHHHH
Confidence            688998888888888875422      1234555655555554 7876631        444578899999999988875


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC-ceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF-FPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~-~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                        .++..++..++.|++.||.|||+   .+++||||||+||+++.++ .++|+|||+++.......   .....|++.|+
T Consensus       126 --~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~~~~y~  197 (330)
T 3nsz_A          126 --TLTDYDIRFYMYEILKALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE---YNVRVASRYFK  197 (330)
T ss_dssp             --GCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCC---CCSCCSCGGGC
T ss_pred             --hCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCc---ccccccccccc
Confidence              48999999999999999999999   9999999999999999776 899999999986544322   23346799999


Q ss_pred             CCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          151 APELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       151 aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      |||.+.+ ..++.++||||+||++++|++|+.||..
T Consensus       198 aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~  233 (330)
T 3nsz_A          198 GPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFH  233 (330)
T ss_dssp             CHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSC
T ss_pred             ChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCccc
Confidence            9999877 6789999999999999999999999954

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.97  E-value=2.4e-31  Score=211.84  Aligned_cols=183  Identities=17%  Similarity=0.239  Sum_probs=141.3

Q ss_pred             CCccccC-----CCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhh
Q 044746            1 MEKPRNR-----GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++++.     ..+..|+.|+.....  ......++..|.......+|++++.      ......++++++++++|..+
T Consensus        41 Vy~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~  118 (322)
T 1p4o_A           41 VYEGVAKGVVKDEPETRVAIKTVNEAA--SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSY  118 (322)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECCTTS--CHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHH
T ss_pred             EEeeeecCccCCCCceEEEEEeccccc--CHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCCccEEEEEeCCCCcHHHH
Confidence            4565554     345556666543221  1112234666777777788888763      44556789999999999888


Q ss_pred             hcc-----------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc
Q 044746           70 CKK-----------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI  138 (202)
Q Consensus        70 ~~~-----------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~  138 (202)
                      +..           ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++.........
T Consensus       119 l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~  195 (322)
T 1p4o_A          119 LRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYR  195 (322)
T ss_dssp             HHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEE
T ss_pred             HHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCCccCCCccceEEEcCCCeEEECcCccccccccccccc
Confidence            753           457999999999999999999999   999999999999999999999999999998654433333


Q ss_pred             ccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       139 ~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ......+|+.|+|||.+.+..++.++||||+|+++++|++ |+.||.....
T Consensus       196 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~  246 (322)
T 1p4o_A          196 KGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN  246 (322)
T ss_dssp             GGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH
T ss_pred             cccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH
Confidence            3334456889999999988889999999999999999999 8999976543

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.97  E-value=9.7e-31  Score=205.40  Aligned_cols=179  Identities=21%  Similarity=0.257  Sum_probs=139.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc---
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK---   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~---   71 (202)
                      ||++++..++..++.|+.....  .......+..|.......+|++++.      ......++++++++++|...+.   
T Consensus        38 V~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  115 (285)
T 3is5_A           38 VHLVEERSSGLERVIKTINKDR--SQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQ  115 (285)
T ss_dssp             EEEEEETTTCCEEEEEEEEGGG--CCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCSCCBHHHHHHHHH
T ss_pred             EEEEEEccCCceEEEEEeeccc--cchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEeCCCCcHHHHHHhhh
Confidence            6888888888888777654332  2223445677777888888998764      3445568899999999987763   


Q ss_pred             --cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEE---cCCCceEEeeeecceeccccCcccccCCCCCC
Q 044746           72 --KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRT  146 (202)
Q Consensus        72 --~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~---~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt  146 (202)
                        ...+++..+..++.|++.||.|||+   .+++||||||+||++   +.++.++|+|||++........   .....||
T Consensus       116 ~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t  189 (285)
T 3is5_A          116 ARGKALSEGYVAELMKQMMNALAYFHS---QHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEH---STNAAGT  189 (285)
T ss_dssp             HHTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-------------CTT
T ss_pred             hcccCCCHHHHHHHHHHHHHHHHHHHh---CCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCccc---CcCcccc
Confidence              3569999999999999999999999   999999999999999   4567899999999986543322   2334579


Q ss_pred             CcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       147 ~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +.|+|||.+. ..++.++|+||+|++++||++|+.||.....
T Consensus       190 ~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~  230 (285)
T 3is5_A          190 ALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSL  230 (285)
T ss_dssp             GGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             cCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCH
Confidence            9999999986 4688999999999999999999999976543

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.97  E-value=2.3e-31  Score=212.92  Aligned_cols=182  Identities=20%  Similarity=0.301  Sum_probs=140.8

Q ss_pred             CCccccCCCcc-----eeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTR-----FITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~   68 (202)
                      ||++++...++     .|+.|+......  ......+..|....... +|++++.      ..+...++++++++++|..
T Consensus        62 Vy~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~  139 (333)
T 2i1m_A           62 VVEATAFGLGKEDAVLKVAVKMLKSTAH--ADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLN  139 (333)
T ss_dssp             EEEEEETTCSSSCCCCEEEEEEECTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHH
T ss_pred             eEEEEecCCCcccchhHHHHHhcccccC--hHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCceEEEEecCCCCcHHH
Confidence            56777655443     466655433211  11223455666666666 7888763      3455678999999999988


Q ss_pred             hhcc---------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccc
Q 044746           69 LCKK---------------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR  133 (202)
Q Consensus        69 ~~~~---------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~  133 (202)
                      ++..               ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.....
T Consensus       140 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~  216 (333)
T 2i1m_A          140 FLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLAS---KNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMN  216 (333)
T ss_dssp             HHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGCEEEGGGEEEBCCCGGGCCGGG
T ss_pred             HHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhc---CCcccCCcccceEEECCCCeEEECcccccccccc
Confidence            8742               358999999999999999999999   9999999999999999999999999999986544


Q ss_pred             cCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          134 EHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       134 ~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      ...........+|+.|+|||.+.+..++.++||||+|++++||++ |..||....
T Consensus       217 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~  271 (333)
T 2i1m_A          217 DSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGIL  271 (333)
T ss_dssp             CTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred             ccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccc
Confidence            433333334556889999999988889999999999999999998 999997654

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.97  E-value=2.8e-31  Score=229.48  Aligned_cols=184  Identities=21%  Similarity=0.300  Sum_probs=142.4

Q ss_pred             CCcc--ccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhccC
Q 044746            1 MEKP--RNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKKN   73 (202)
Q Consensus         1 v~k~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~~   73 (202)
                      ||++  +....+..||+|+.+.... .......+..|..+....+|++++.     ......++++++++|+|..++...
T Consensus       385 Vy~~~~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~lv~E~~~~g~L~~~l~~~  463 (635)
T 4fl3_A          385 VKKGYYQMKKVVKTVAVKILKNEAN-DPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQN  463 (635)
T ss_dssp             EEEEEEECSSCEEEEEEEEECGGGG-CGGGHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHHHHHC
T ss_pred             EEEEEEcCCCcceEEEEEEeccccC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEEEccCCCCHHHHHhhC
Confidence            5777  4455667788776544322 1222355778888888889998874     223345889999999999988654


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc-ccccCCCCCCCcccC
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT-HITSTGRRRTPGCEA  151 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~gt~~y~a  151 (202)
                       .+++..+..++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+++....... ........+|+.|+|
T Consensus       464 ~~l~~~~~~~i~~qi~~~L~yLH~---~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~A  540 (635)
T 4fl3_A          464 RHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYA  540 (635)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------------CGGGSC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeC
Confidence             59999999999999999999999   9999999999999999999999999999986543322 112233456788999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ||++.+..++.++|||||||++|||++ |+.||.+...
T Consensus       541 PE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~  578 (635)
T 4fl3_A          541 PECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG  578 (635)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH
T ss_pred             hhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            999998899999999999999999998 9999987554

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.97  E-value=1.1e-30  Score=203.72  Aligned_cols=181  Identities=18%  Similarity=0.256  Sum_probs=140.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..+++.|+.|+.........+...++..|.......+|++++.      ..+...++++++++++|..++.. .
T Consensus        27 V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  106 (276)
T 2h6d_A           27 VKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHG  106 (276)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHC
T ss_pred             EEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEEeccCCCcHHHHHhccC
Confidence            6888888778888888765544444444556777777778888888763      34456688999999999888754 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++........   .....|++.|+|||
T Consensus       107 ~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~y~aPE  180 (276)
T 2h6d_A          107 RVEEMEARRLFQQILSAVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF---LRTSCGSPNYAAPE  180 (276)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH---HCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC----------------CCTG
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChhhEEECCCCCEEEeecccccccCCCcc---eecccCCccccCHH
Confidence            69999999999999999999999   9999999999999999999999999999976543321   22345789999999


Q ss_pred             ccCCCCC-CchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          154 LWMPYSV-TQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       154 ~~~~~~~-~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      .+.+..+ +.++|+||+|+++++|++|+.||....
T Consensus       181 ~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~  215 (276)
T 2h6d_A          181 VISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEH  215 (276)
T ss_dssp             GGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             HHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCc
Confidence            9987765 588999999999999999999997643

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.97  E-value=7.9e-31  Score=215.54  Aligned_cols=179  Identities=18%  Similarity=0.227  Sum_probs=129.1

Q ss_pred             CCccccC--CCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNR--GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++++.  ..++.||.|+....     .....+..|..++...+|+|++..        .....++++++.+ +|..++
T Consensus        37 Vy~~~~~~~~~~~~vaiK~~~~~-----~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~  110 (405)
T 3rgf_A           37 VYKAKRKDGKDDKDYALKQIEGT-----GISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEH-DLWHII  110 (405)
T ss_dssp             EEEEEESSSSCCCCEEEEECSSS-----SCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCSE-EHHHHH
T ss_pred             EEEEEEccCCCCeEEEEEEECCC-----CCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCCC-CHHHHH
Confidence            6788854  45667776654321     112345567778888889988742        3344577777764 665555


Q ss_pred             cc----------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEE----cCCCceEEeeeecceeccccCc
Q 044746           71 KK----------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL----DENFFPKAADFGLAKLYNREHT  136 (202)
Q Consensus        71 ~~----------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~----~~~~~~kl~dfgl~~~~~~~~~  136 (202)
                      ..          ..+++..+..++.|++.||.|||+   .+|+||||||+|||+    +.++.+||+|||+++.......
T Consensus       111 ~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~  187 (405)
T 3rgf_A          111 KFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLK  187 (405)
T ss_dssp             HHHHHHC-------CCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC-------
T ss_pred             HHhccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCc
Confidence            31          249999999999999999999999   999999999999999    6778999999999986643221


Q ss_pred             -ccccCCCCCCCcccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          137 -HITSTGRRRTPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       137 -~~~~~~~~gt~~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                       ........||+.|+|||++.+. .++.++||||+||++|||++|++||.....
T Consensus       188 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~  241 (405)
T 3rgf_A          188 PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQE  241 (405)
T ss_dssp             ---------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC-
T ss_pred             ccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccc
Confidence             1223345689999999999874 589999999999999999999999976544

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.97  E-value=2.2e-31  Score=212.82  Aligned_cols=179  Identities=21%  Similarity=0.264  Sum_probs=136.6

Q ss_pred             CCccccCCCccee--ehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFI--TRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++++..++..+  +.|..+.  ........++..|....... +|++++.      ..+...++++++++++|..++.
T Consensus        41 Vy~~~~~~~~~~~~v~iK~~~~--~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~  118 (327)
T 1fvr_A           41 VLKARIKKDGLRMDAAIKRMKE--YASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLR  118 (327)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEC--C------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHH
T ss_pred             EEEEEEccCCcccceeeeeecc--ccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEEEecCCCCCHHHHHH
Confidence            6788887776654  4444322  22223344566676666666 8888763      3445668899999999998886


Q ss_pred             cC-----------------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceecccc
Q 044746           72 KN-----------------ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE  134 (202)
Q Consensus        72 ~~-----------------~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~  134 (202)
                      ..                 .+++.++..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++.....
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~~  195 (327)
T 1fvr_A          119 KSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVY  195 (327)
T ss_dssp             TTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECGGGCEEECCTTCEESSCEE
T ss_pred             hcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCccceEEEcCCCeEEEcccCcCcccccc
Confidence            54                 59999999999999999999999   99999999999999999999999999998743321


Q ss_pred             CcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       135 ~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      .   ......+++.|+|||.+.+..++.++||||+|++++||++ |+.||....
T Consensus       196 ~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~  246 (327)
T 1fvr_A          196 V---KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT  246 (327)
T ss_dssp             C---CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             c---cccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCc
Confidence            1   1222345789999999988888999999999999999998 999997654

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.97  E-value=1.5e-30  Score=216.69  Aligned_cols=173  Identities=23%  Similarity=0.301  Sum_probs=138.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc-------cccceEEEEEccCCchhhhhccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS-------EDTETYIKGFLAMGPFYLLCKKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------~~~~~~~~~~~~~~~l~~~~~~~   73 (202)
                      ||++...  ++.||.|+.+..     .....|..|.......+|+|++..       .+...++++++++|+|..++...
T Consensus       209 V~~~~~~--~~~vavK~~~~~-----~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~  281 (450)
T 1k9a_A          209 VMLGDYR--GNKVAVKCIKND-----ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSR  281 (450)
T ss_dssp             EEEEEET--TEEEEEEEESSC-----TTSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECCTTCBHHHHHHHH
T ss_pred             EEEEEec--CCeEEEEEeCCc-----hHHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEecCCCcHHHHHHhc
Confidence            5666654  345666654332     134457788888888899987632       22456889999999999988643


Q ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 ---ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 ---~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                         .+++..+..++.|++.||.|||+   ++++||||||+|||++.++.+||+|||+++......     ....+++.|+
T Consensus       282 ~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~-----~~~~~~~~y~  353 (450)
T 1k9a_A          282 GRSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-----DTGKLPVKWT  353 (450)
T ss_dssp             CTTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTSCEEECCCTTCEECC-----------CCCTTTS
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHhhEEECCCCCEEEeeCCCcccccccc-----cCCCCCccee
Confidence               37999999999999999999999   999999999999999999999999999998543221     1224588999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |||.+.+..++.++||||||+++|||++ |+.||.....
T Consensus       354 aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~  392 (450)
T 1k9a_A          354 APEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL  392 (450)
T ss_dssp             CHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCT
T ss_pred             CHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            9999999899999999999999999998 9999986544

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.97  E-value=8.9e-31  Score=203.49  Aligned_cols=179  Identities=20%  Similarity=0.330  Sum_probs=140.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++.++.. ||.|+.+....    ....+..|.......+|++++.      ......++++++++++|..++..  
T Consensus        24 V~~~~~~~~~~-vavK~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   98 (268)
T 3sxs_A           24 VKLGKWKGQYD-VAVKMIKEGSM----SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHG   98 (268)
T ss_dssp             EEEEEETTTEE-EEEEEECBTTB----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHHG
T ss_pred             EEEEEecCcee-EEEEEeccCCC----cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccCCCcHHHHHHHcC
Confidence            57777665444 55554332211    1234666777777788888763      34455789999999999888854  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++......... ......+|+.|+||
T Consensus        99 ~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aP  174 (268)
T 3sxs_A           99 KGLEPSQLLEMCYDVCEGMAFLES---HQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYV-SSVGTKFPVKWSAP  174 (268)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHH---TTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEE-ECCSCCCCGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCcCcceEEECCCCCEEEccCccceecchhhhh-cccCCCcCcccCCH
Confidence            359999999999999999999999   99999999999999999999999999999866543322 22344567889999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |.+.+..++.++|+||+|+++++|++ |+.||.....
T Consensus       175 E~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~  211 (268)
T 3sxs_A          175 EVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTN  211 (268)
T ss_dssp             HHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCH
T ss_pred             HHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccCh
Confidence            99988889999999999999999999 9999976543

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.97  E-value=4e-30  Score=204.05  Aligned_cols=177  Identities=19%  Similarity=0.218  Sum_probs=145.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc--c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK--K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~--~   72 (202)
                      ||++++..+++.|+.|+....     .....+..|.......+|++++.      ..+...++++++++++|..++.  .
T Consensus        45 Vy~~~~~~~~~~vaiK~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~  119 (314)
T 3com_A           45 VYKAIHKETGQIVAIKQVPVE-----SDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRN  119 (314)
T ss_dssp             EEEEEETTTCCEEEEEEEETT-----SCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHHT
T ss_pred             EEEEEECCCCCEEEEEecCch-----HHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecCCCCCHHHHHHhcC
Confidence            688888888888887765432     12344666777777788888763      3344578899999999998875  5


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++........  ......|++.|+||
T Consensus       120 ~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aP  194 (314)
T 3com_A          120 KTLTEDEIATILQSTLKGLEYLHF---MRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAP  194 (314)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBS--CBCCCCSCGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhcc--ccCccCCCCCccCh
Confidence            679999999999999999999999   9999999999999999999999999999986543322  12345679999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |.+.+..++.++|+||+|+++++|++|+.||....
T Consensus       195 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  229 (314)
T 3com_A          195 EVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIH  229 (314)
T ss_dssp             HHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred             hhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCC
Confidence            99998889999999999999999999999997644

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=2.5e-30  Score=206.83  Aligned_cols=168  Identities=21%  Similarity=0.287  Sum_probs=125.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHH--HHHhcccccccccc----------ccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQR--MIAADNFSNLVGSE----------DTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~----------~~~~~~~~~~~~~~l~~   68 (202)
                      ||++++.  ++.||.|+.......      .+..+..  .....+|+|++...          ....++++++++++|..
T Consensus        53 V~~~~~~--~~~vavK~~~~~~~~------~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~  124 (337)
T 3mdy_A           53 VWMGKWR--GEKVAVKVFFTTEEA------SWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYD  124 (337)
T ss_dssp             EEEEEET--TEEEEEEEEEGGGHH------HHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHHH
T ss_pred             EEEEEEC--CceEEEEEEeccccc------hhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHHH
Confidence            5777765  556666654322211      1111222  22224788776321          34568899999999999


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCC--------CeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc--
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEECRQ--------KIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI--  138 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~--------~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~--  138 (202)
                      +++...+++..+..++.|++.||.|||+   .        +++||||||+||+++.++.+||+|||++..........  
T Consensus       125 ~l~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  201 (337)
T 3mdy_A          125 YLKSTTLDAKSMLKLAYSSVSGLCHLHT---EIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDI  201 (337)
T ss_dssp             HHHHCCBCHHHHHHHHHHHHHHHHHHHS---CBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEECC--------
T ss_pred             HhhccCCCHHHHHHHHHHHHHHHHHHHH---hhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCceeeccccccccC
Confidence            9998899999999999999999999998   6        99999999999999999999999999997654332211  


Q ss_pred             ccCCCCCCCcccCCcccCCCCCCch------hhHHHHHHHHHHHHcC
Q 044746          139 TSTGRRRTPGCEAPELWMPYSVTQK------CDVFSFGMLLFEVVGR  179 (202)
Q Consensus       139 ~~~~~~gt~~y~aPe~~~~~~~~~~------~Diws~G~~l~el~~g  179 (202)
                      ......||+.|+|||++.+...+..      +|||||||++|||++|
T Consensus       202 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg  248 (337)
T 3mdy_A          202 PPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARR  248 (337)
T ss_dssp             -CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhc
Confidence            1234568999999999987665554      9999999999999999

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.96  E-value=1.6e-30  Score=204.37  Aligned_cols=178  Identities=20%  Similarity=0.298  Sum_probs=142.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc----------cccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS----------EDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++++..++..|+.|+....... ......+..|.......+|++++..          .....++++++++++|..++
T Consensus        42 Vy~~~~~~~~~~va~k~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l  120 (290)
T 1t4h_A           42 VYKGLDTETTVEVAWCELQDRKLT-KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYL  120 (290)
T ss_dssp             EEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHH
T ss_pred             EEEeEecCCceEEEEEEecchhhC-HHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEEEEecCCCCHHHHH
Confidence            688988888888887765433211 1223456677777788889987742          23356888999999999988


Q ss_pred             cc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEecCCCCcEEEc-CCCceEEeeeecceeccccCcccccCCCCCC
Q 044746           71 KK-NILGFGQLREIEVSTSKGIAYLHEECRQK--IVHYDIKPESVLLD-ENFFPKAADFGLAKLYNREHTHITSTGRRRT  146 (202)
Q Consensus        71 ~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~--iiHrdlk~~nil~~-~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt  146 (202)
                      .. ..+++..+..++.|++.||.|||+   .+  ++||||||+||+++ .++.++|+|||++.......    .....||
T Consensus       121 ~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~t  193 (290)
T 1t4h_A          121 KRFKVMKIKVLRSWCRQILKGLQFLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASF----AKAVIGT  193 (290)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHHHT---SSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTS----BEESCSS
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHHHHc---CCCCEEECCCCHHHEEEECCCCCEEEeeCCCcccccccc----cccccCC
Confidence            66 679999999999999999999999   78  99999999999997 78999999999997543322    1234579


Q ss_pred             CcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       147 ~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +.|+|||.+.+ .++.++|+||+|+++++|++|+.||....
T Consensus       194 ~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~  233 (290)
T 1t4h_A          194 PEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQ  233 (290)
T ss_dssp             CCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCS
T ss_pred             cCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcC
Confidence            99999998875 58999999999999999999999997643

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.96  E-value=2.5e-30  Score=204.32  Aligned_cols=183  Identities=17%  Similarity=0.205  Sum_probs=141.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhc-cCCcccCCcHHHHHHhcccccccc--------ccccceEEEEEccCCchhhhh-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAME-MDKPIRFTSPQRMIAADNFSNLVG--------SEDTETYIKGFLAMGPFYLLC-   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~~~~~~~~~~~~~l~~~~-   70 (202)
                      ||++++..+++.++.|+.+...... ......+..|.......+|++++.        ......++++++.++ +..++ 
T Consensus        21 V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~   99 (305)
T 2wtk_C           21 VKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCG-MQEMLD   99 (305)
T ss_dssp             EEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEEEEEECCSEE-HHHHHH
T ss_pred             EEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEEEEehhccCC-HHHHHH
Confidence            6888888888888887755443222 233445777777778888888763        223456888888877 43333 


Q ss_pred             --ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           71 --KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        71 --~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                        ....+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++................||+.
T Consensus       100 ~~~~~~~~~~~~~~~~~qi~~al~~LH~---~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~  176 (305)
T 2wtk_C          100 SVPEKRFPVCQAHGYFCQLIDGLEYLHS---QGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPA  176 (305)
T ss_dssp             HSTTCSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGG
T ss_pred             hCcccccCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCcccEEEcCCCcEEeeccccccccCccccccccccCCCCCC
Confidence              34569999999999999999999999   9999999999999999999999999999987643322223344567999


Q ss_pred             ccCCcccCCCC--CCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          149 CEAPELWMPYS--VTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       149 y~aPe~~~~~~--~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |+|||++.+..  ++.++|+||+|++++||++|+.||....
T Consensus       177 y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  217 (305)
T 2wtk_C          177 FQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDN  217 (305)
T ss_dssp             GCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             CcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCch
Confidence            99999987644  3779999999999999999999998654

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.96  E-value=9e-31  Score=210.94  Aligned_cols=181  Identities=18%  Similarity=0.238  Sum_probs=140.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc-----------ccceEEEEEccCCchhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE-----------DTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++++..+++.||.|+......  .....++..|.......+|++++...           ....++++++. ++|..+
T Consensus        27 V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~  103 (353)
T 2b9h_A           27 VCSATHKPTGEIVAIKKIEPFDK--PLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELMQ-TDLHRV  103 (353)
T ss_dssp             EEEEEETTTTEEEEEEEECCCSS--HHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEEEEECCCS-EEHHHH
T ss_pred             EEEEEECCCCcEEEEEeeccccc--chHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceEEEEEeccC-ccHHHH
Confidence            68888888888888776532211  11123455677777778899876321           34457777776 688888


Q ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc--------ccC
Q 044746           70 CKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI--------TST  141 (202)
Q Consensus        70 ~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~--------~~~  141 (202)
                      +....+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++..........        ...
T Consensus       104 ~~~~~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~  180 (353)
T 2b9h_A          104 ISTQMLSDDHIQYFIYQTLRAVKVLHG---SNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMV  180 (353)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCEECC----------------C
T ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEcCCCcEEEEecccccccccccccccCccccccchh
Confidence            888889999999999999999999999   999999999999999999999999999998754321111        122


Q ss_pred             CCCCCCcccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          142 GRRRTPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       142 ~~~gt~~y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ...||+.|+|||++.. ..++.++|+||+||++++|++|++||.+..
T Consensus       181 ~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  227 (353)
T 2b9h_A          181 EFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRD  227 (353)
T ss_dssp             CCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             hccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            3467999999998754 678999999999999999999999998654

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.96  E-value=8.5e-31  Score=209.80  Aligned_cols=182  Identities=21%  Similarity=0.224  Sum_probs=139.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||++++..+++.||.|+....... ......+..|.......+|++++.      ..+...+++++++++++..+.. ..
T Consensus        41 V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~  119 (331)
T 4aaa_A           41 VMKCRNKDTGRIVAIKKFLESDDD-KMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPN  119 (331)
T ss_dssp             EEEEEETTTCCEEEEEEEESCSSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHSTT
T ss_pred             EEEEEECCCCceEEEEEEecCCCc-hHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEecCCcchHHHHHhhcc
Confidence            688999888888888764322111 111223456666777788888763      3444568899999998887754 45


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++........  ......||+.|+|||
T Consensus       120 ~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~t~~y~aPE  194 (331)
T 4aaa_A          120 GLDYQVVQKYLFQIINGIGFCHS---HNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE--VYDDEVATRWYRAPE  194 (331)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCTTC--------------CCCCCTTCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCEEccCcChheEEEcCCCcEEEEeCCCceeecCCcc--ccCCCcCCccccCcc
Confidence            69999999999999999999999   9999999999999999999999999999976543222  123346799999999


Q ss_pred             ccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+. .++.++||||+|+++++|++|++||.....
T Consensus       195 ~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  230 (331)
T 4aaa_A          195 LLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSD  230 (331)
T ss_dssp             HHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             cccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCc
Confidence            99875 688999999999999999999999987654

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.96  E-value=8.2e-31  Score=208.88  Aligned_cols=181  Identities=22%  Similarity=0.321  Sum_probs=144.5

Q ss_pred             CccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhhhhccC
Q 044746            2 EKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYLLCKKN   73 (202)
Q Consensus         2 ~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~~~~~~   73 (202)
                      |++.+...++.||.|+.+...  .......+..|.......+|++++..        .....++++++++++|..++...
T Consensus        52 ~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  129 (318)
T 3lxp_A           52 YDPTNDGTGEMVAVKALKADA--GPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRH  129 (318)
T ss_dssp             ECSCC--CCEEEEEEEECTTC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEEEECCCTTCBHHHHGGGS
T ss_pred             EccCCCCCCcEEEEEEecccc--ChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEEEEecccCCcHHHHHhhC
Confidence            566777788888888754331  11223446677777888889987742        23346889999999999999998


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc-cccCCCCCCCcccCC
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-ITSTGRRRTPGCEAP  152 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~gt~~y~aP  152 (202)
                      .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++......... .......+|+.|+||
T Consensus       130 ~~~~~~~~~i~~~l~~~l~~LH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aP  206 (318)
T 3lxp_A          130 SIGLAQLLLFAQQICEGMAYLHA---QHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAP  206 (318)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCchheEEEcCCCCEEECCccccccccccccccccccCCCCCceeeCh
Confidence            99999999999999999999999   99999999999999999999999999999876543221 122334568889999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |.+.+..++.++||||+|+++++|++|+.||....
T Consensus       207 E~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~  241 (318)
T 3lxp_A          207 ECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPP  241 (318)
T ss_dssp             HHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH
T ss_pred             HHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccc
Confidence            99988888999999999999999999999997643

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.96  E-value=2.5e-30  Score=202.16  Aligned_cols=173  Identities=19%  Similarity=0.229  Sum_probs=141.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc----------------------ccceEEE
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE----------------------DTETYIK   58 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----------------------~~~~~~~   58 (202)
                      ||++++..+++.|+.|+.+...       ..+..|.......+|++++...                      ....+++
T Consensus        27 V~~~~~~~~~~~vavK~~~~~~-------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~   99 (284)
T 2a19_B           27 VFKAKHRIDGKTYVIKRVKYNN-------EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQM   99 (284)
T ss_dssp             EEEEEETTTCCEEEEEEEECCS-------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------CCEEEEEEEEE
T ss_pred             EEEEEEcCCCeEEEEEEecccc-------HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccccccCcceEEEEE
Confidence            6888888777777777653321       2455677777788899877432                      2246788


Q ss_pred             EEccCCchhhhhcc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccC
Q 044746           59 GFLAMGPFYLLCKK---NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH  135 (202)
Q Consensus        59 ~~~~~~~l~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~  135 (202)
                      +++++++|..++..   ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++.......
T Consensus       100 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  176 (284)
T 2a19_B          100 EFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHS---KKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDG  176 (284)
T ss_dssp             CCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCEESSCCS
T ss_pred             eccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCCHHHEEEcCCCCEEECcchhheeccccc
Confidence            89999999988843   469999999999999999999999   999999999999999999999999999998765432


Q ss_pred             cccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          136 THITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       136 ~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      .   .....|++.|+|||.+.+..++.++|+||+|+++++|++|..|+...
T Consensus       177 ~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~  224 (284)
T 2a19_B          177 K---RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET  224 (284)
T ss_dssp             C---CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH
T ss_pred             c---ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH
Confidence            2   23345799999999999888999999999999999999999998653

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=5.1e-31  Score=214.79  Aligned_cols=183  Identities=20%  Similarity=0.272  Sum_probs=129.8

Q ss_pred             CCccccCCC---cceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc-------cccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGS---TRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS-------EDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||+++....   ...|++|..+..  .......+|..|..+....+|+|++..       .+...++++++++++|..++
T Consensus       105 Vy~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~e~~~~g~L~~~l  182 (373)
T 3c1x_A          105 VYHGTLLDNDGKKIHCAVKSLNRI--TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFI  182 (373)
T ss_dssp             EEEEEEEETTTEEEEEEEEECCSC--SCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEEECCTTCBHHHHH
T ss_pred             EEEEEEECCCCcEEEEEEEEcCCC--CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEEECCCCCCHHHHH
Confidence            566665332   234555543321  111223446667667777788887632       23456899999999999998


Q ss_pred             cc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc--cccCCCCCC
Q 044746           71 KK--NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH--ITSTGRRRT  146 (202)
Q Consensus        71 ~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~--~~~~~~~gt  146 (202)
                      ..  ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++........  .......+|
T Consensus       183 ~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~  259 (373)
T 3c1x_A          183 RNETHNPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLP  259 (373)
T ss_dssp             HCTTCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC---------------------CC
T ss_pred             hhcccCCCHHHHHHHHHHHHHHHHHHHH---CCEecCccchheEEECCCCCEEEeeccccccccccccccccccCCCCCc
Confidence            65  358999999999999999999999   99999999999999999999999999999865332211  112334567


Q ss_pred             CcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       147 ~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      +.|+|||.+.+..++.++||||||+++|||++ |.+||.....
T Consensus       260 ~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~  302 (373)
T 3c1x_A          260 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT  302 (373)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCS
T ss_pred             ccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCH
Confidence            89999999998899999999999999999999 7888876543

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.96  E-value=1.5e-30  Score=206.35  Aligned_cols=182  Identities=17%  Similarity=0.252  Sum_probs=134.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc---
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK---   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~---   71 (202)
                      ||++++..+++.||.|+.+...........++..|.......+|++++.      ..+...++++++++++|..++.   
T Consensus        48 Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  127 (310)
T 2wqm_A           48 VYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFK  127 (310)
T ss_dssp             EEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCCSCBHHHHHHHHH
T ss_pred             EEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEEecCCCCCHHHHHHHhc
Confidence            6888887777888877654322222222344666777777888888764      3345568899999999988774   


Q ss_pred             --cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           72 --KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        72 --~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                        ...+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++........  ......|++.|
T Consensus       128 ~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y  202 (310)
T 2wqm_A          128 KQKRLIPERTVWKYFVQLCSALEHMHS---RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT--AAHSLVGTPYY  202 (310)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCC--------------------CCSS
T ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCcHHHEEEcCCCCEEEEeccceeeecCCCc--cccccCCCeeE
Confidence              3569999999999999999999999   9999999999999999999999999999876543221  12234579999


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +|||.+.+..++.++|+||||+++++|++|+.||.+..
T Consensus       203 ~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  240 (310)
T 2wqm_A          203 MSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK  240 (310)
T ss_dssp             CCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---
T ss_pred             eChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence            99999999899999999999999999999999997543

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.96  E-value=1.4e-30  Score=205.37  Aligned_cols=183  Identities=21%  Similarity=0.281  Sum_probs=136.2

Q ss_pred             CCccccCCCc---ceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-------ccccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGST---RFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-------SEDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-------~~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++++...+   ..++.|.....  ........+..|.......+|++++.       ..+...++++++++++|..++
T Consensus        41 Vy~~~~~~~~~~~~~~avk~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~l  118 (298)
T 3f66_A           41 VYHGTLLDNDGKKIHCAVKSLNRI--TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFI  118 (298)
T ss_dssp             EEEEEEC-----CEEEEEEEETTC--CSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEEECCTTCBHHHHH
T ss_pred             EEEEEEecCCCceeEEEEEecccC--CCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEEEEeCCCCCCHHHHH
Confidence            5777654332   23455443321  11122344667777778888998763       233456899999999999988


Q ss_pred             cc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc--ccccCCCCCC
Q 044746           71 KK--NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT--HITSTGRRRT  146 (202)
Q Consensus        71 ~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~--~~~~~~~~gt  146 (202)
                      ..  ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++.......  ........+|
T Consensus       119 ~~~~~~~~~~~~~~i~~ql~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~  195 (298)
T 3f66_A          119 RNETHNPTVKDLIGFGLQVAKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLP  195 (298)
T ss_dssp             HCTTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBC
T ss_pred             HhcccCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCchheEEECCCCCEEECcccccccccccchhccccccCCCCC
Confidence            54  458999999999999999999999   9999999999999999999999999999986543321  1223345568


Q ss_pred             CcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       147 ~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      +.|+|||.+.+..++.++|+||+|++++++++ |.+||.....
T Consensus       196 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~  238 (298)
T 3f66_A          196 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT  238 (298)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCT
T ss_pred             ccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCH
Confidence            89999999988889999999999999999999 6666665443

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.96  E-value=2.6e-31  Score=214.95  Aligned_cols=179  Identities=20%  Similarity=0.238  Sum_probs=144.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||++++..++..||+|+.....  .......+..|.......+|++++.      ..+...++++++++++|..++.. .
T Consensus        49 V~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  126 (360)
T 3eqc_A           49 VFKVSHKPSGLVMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAG  126 (360)
T ss_dssp             EEEEEETTTCCEEEEEEEECCC--CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHHHS
T ss_pred             EEEEEECCCCcEEEEEEecccc--CHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEECCCCCCHHHHHHHcC
Confidence            6889999888889888754321  1112234666666777778888764      34455688999999999988865 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCC-CeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQ-KIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~-~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      .+++..+..++.|++.||.|||+   . +++||||||+||+++.++.++|+|||++.......    .....||+.|+||
T Consensus       127 ~~~~~~~~~i~~~i~~~l~~lh~---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~gt~~y~aP  199 (360)
T 3eqc_A          127 RIPEQILGKVSIAVIKGLTYLRE---KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSP  199 (360)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH---HHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHC--------CCCCTTCCH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---hCCEEcCCccHHHEEECCCCCEEEEECCCCccccccc----ccCCCCCCCeECH
Confidence            69999999999999999999998   5 89999999999999999999999999987543221    2334679999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |++.+..++.++||||+|+++++|++|+.||.....
T Consensus       200 E~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  235 (360)
T 3eqc_A          200 ERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDA  235 (360)
T ss_dssp             HHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCH
T ss_pred             HHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            999999999999999999999999999999976543

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=1.6e-30  Score=204.68  Aligned_cols=180  Identities=24%  Similarity=0.318  Sum_probs=137.1

Q ss_pred             CCccccCCCcc---eeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc-------cccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGSTR---FITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS-------EDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++++.....   .++.|+.....  .......+..|.......+|++++..       .....++++++.+++|..++
T Consensus        37 Vy~~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~~  114 (298)
T 3pls_A           37 VYHGEYIDQAQNRIQCAIKSLSRIT--EMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFI  114 (298)
T ss_dssp             EEEEEEECSSSCEEEEEEEEETTCC--SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEECCCTTCBHHHHH
T ss_pred             EEEEEEecCCCceeeeeeeeccccc--cHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEEecccCCCHHHHH
Confidence            57776543333   55655543221  11223456677777788889987742       22336889999999999988


Q ss_pred             cc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc--ccccCCCCCC
Q 044746           71 KK--NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT--HITSTGRRRT  146 (202)
Q Consensus        71 ~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~--~~~~~~~~gt  146 (202)
                      ..  ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++.......  ........++
T Consensus       115 ~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~  191 (298)
T 3pls_A          115 RSPQRNPTVKDLISFGLQVARGMEYLAE---QKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLP  191 (298)
T ss_dssp             HCTTCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCG
T ss_pred             hccccCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCC
Confidence            65  568999999999999999999999   9999999999999999999999999999985543221  1122344568


Q ss_pred             CcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCC-CCcc
Q 044746          147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR-NLEK  185 (202)
Q Consensus       147 ~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~-p~~~  185 (202)
                      +.|+|||.+.+..++.++|+||+|+++++|++|.. ||..
T Consensus       192 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~  231 (298)
T 3pls_A          192 VKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRH  231 (298)
T ss_dssp             GGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTT
T ss_pred             ccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCcc
Confidence            89999999999999999999999999999999554 4443

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.96  E-value=1.6e-30  Score=205.23  Aligned_cols=181  Identities=22%  Similarity=0.253  Sum_probs=142.3

Q ss_pred             CCccc----cCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhh
Q 044746            1 MEKPR----NRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~   68 (202)
                      ||+++    +...++.||.|+.+...  .......+..|.......+|++++..        +....++++++++++|..
T Consensus        37 V~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~  114 (302)
T 4e5w_A           37 VELCRYDPEGDNTGEQVAVKSLKPES--GGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKE  114 (302)
T ss_dssp             EEEEEECTTSSSCSEEEEEEEEC-------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEEEEEECCTTCBHHH
T ss_pred             EEEEEEccccCccCeEEEEEEecccc--cchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEEEEEEeCCCCcHHH
Confidence            56666    66777888877754332  22233456677777888889987642        133468899999999999


Q ss_pred             hhc--cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc-cccCCCCC
Q 044746           69 LCK--KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-ITSTGRRR  145 (202)
Q Consensus        69 ~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~g  145 (202)
                      ++.  ...+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++......... .......|
T Consensus       115 ~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~  191 (302)
T 4e5w_A          115 YLPKNKNKINLKQQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDS  191 (302)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTC
T ss_pred             HHHhccccCCHHHHHHHHHHHHHHHHHhhc---CCcccCCCchheEEEcCCCCEEECcccccccccCCCcceeccCCCCC
Confidence            883  3469999999999999999999999   99999999999999999999999999999876543322 22334567


Q ss_pred             CCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          146 TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       146 t~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      |..|+|||.+.+..++.++|+||+|+++++|++|..|+...
T Consensus       192 ~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  232 (302)
T 4e5w_A          192 PVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSP  232 (302)
T ss_dssp             CGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSH
T ss_pred             CccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcch
Confidence            88899999998888899999999999999999999986543

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.96  E-value=1.5e-30  Score=203.36  Aligned_cols=176  Identities=16%  Similarity=0.179  Sum_probs=136.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++++..+++.|+.|+.+....... ....+..+....... +|++++.      ..+...++++++++++|..++.. 
T Consensus        27 V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  105 (289)
T 1x8b_A           27 VFKCVKRLDGCIYAIKRSKKPLAGSV-DEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISEN  105 (289)
T ss_dssp             EEEEEETTTCCEEEEEEEECCCTTSH-HHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHH
T ss_pred             EEEEEEcCCCceEEEEEecccccccH-HHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEEecCCCcHHHHHHhh
Confidence            68899988888888887543221111 122344454444444 8888763      34455688999999999988854 


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC-------------------CCceEEeeeecce
Q 044746           73 ----NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE-------------------NFFPKAADFGLAK  129 (202)
Q Consensus        73 ----~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~-------------------~~~~kl~dfgl~~  129 (202)
                          ..+++..+..++.|++.||.|||+   .+++||||||+||+++.                   ...++|+|||++.
T Consensus       106 ~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~  182 (289)
T 1x8b_A          106 YRIMSYFKEAELKDLLLQVGRGLRYIHS---MSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVT  182 (289)
T ss_dssp             HHHTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEC--------------------CCCEEECCCTTCE
T ss_pred             cccccCCCHHHHHHHHHHHHHHHHHHHh---CCEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEccccccc
Confidence                569999999999999999999999   99999999999999984                   4478999999998


Q ss_pred             eccccCcccccCCCCCCCcccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          130 LYNREHTHITSTGRRRTPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       130 ~~~~~~~~~~~~~~~gt~~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      .....      ....||+.|+|||.+.+. .++.++||||+|+++++|++|.+|+...
T Consensus       183 ~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~  234 (289)
T 1x8b_A          183 RISSP------QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG  234 (289)
T ss_dssp             ETTCS------CCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS
T ss_pred             ccCCc------cccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch
Confidence            65432      223479999999999865 5668999999999999999999876543

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.96  E-value=9.2e-31  Score=204.91  Aligned_cols=179  Identities=19%  Similarity=0.317  Sum_probs=140.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++.++.. ||.|+.+....    ....+..|.......+|++++.      ......++++++++++|..++..  
T Consensus        40 V~~~~~~~~~~-vavK~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  114 (283)
T 3gen_A           40 VKYGKWRGQYD-VAIKMIKEGSM----SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMR  114 (283)
T ss_dssp             EEEEEETTTEE-EEEEEECTTSB----CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCTTCBHHHHHHCGG
T ss_pred             EEEEEEcCCCe-EEEEEecCCCC----CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccCCCcHHHHHHHhc
Confidence            56776664444 45544332211    1234666777777888888763      34455688999999999998865  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++........ .......+|+.|+||
T Consensus       115 ~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aP  190 (283)
T 3gen_A          115 HRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY-TSSVGSKFPVRWSPP  190 (283)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHH-HSTTSTTSCGGGCCH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCccceEEEcCCCCEEEcccccccccccccc-ccccCCccCcccCCH
Confidence            579999999999999999999999   9999999999999999999999999999986543221 122334567889999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |.+.+..++.++|+||+|+++++|++ |+.||.....
T Consensus       191 E~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~  227 (283)
T 3gen_A          191 EVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN  227 (283)
T ss_dssp             HHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCH
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccCh
Confidence            99988889999999999999999998 9999976543

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.96  E-value=3.2e-30  Score=205.65  Aligned_cols=182  Identities=19%  Similarity=0.264  Sum_probs=140.0

Q ss_pred             CCccccCCCcceeehhhhchhhh-----hccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDA-----MEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++++..+++.||.|+......     ........+..|.......+|++++.     ......++++++++++|..++
T Consensus        26 V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~~  105 (322)
T 2ycf_A           26 VKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAEDYYIVLELMEGGELFDKV  105 (322)
T ss_dssp             EEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEETHHHH
T ss_pred             EEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCceEEEEecCCCCcHHHHH
Confidence            68899988888888877543221     11222345667777788889998764     223356889999999998877


Q ss_pred             cc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC---ceEEeeeecceeccccCcccccCCCCCC
Q 044746           71 KK-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF---FPKAADFGLAKLYNREHTHITSTGRRRT  146 (202)
Q Consensus        71 ~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~---~~kl~dfgl~~~~~~~~~~~~~~~~~gt  146 (202)
                      .. ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++   .+||+|||++........   .....||
T Consensus       106 ~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~gt  179 (322)
T 2ycf_A          106 VGNKRLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSL---MRTLCGT  179 (322)
T ss_dssp             STTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCCHH---HHHHHSC
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEecCCCCCeEEEccCccceecccccc---cccccCC
Confidence            54 469999999999999999999999   9999999999999998655   499999999987543221   1223569


Q ss_pred             CcccCCcccC---CCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          147 PGCEAPELWM---PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       147 ~~y~aPe~~~---~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +.|+|||++.   ...++.++||||+|+++++|++|+.||.....
T Consensus       180 ~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  224 (322)
T 2ycf_A          180 PTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRT  224 (322)
T ss_dssp             CTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTC
T ss_pred             cCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccch
Confidence            9999999973   45788999999999999999999999976543

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.96  E-value=3.9e-30  Score=207.73  Aligned_cols=179  Identities=17%  Similarity=0.137  Sum_probs=134.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc-------------cceEEEEEccCCchh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED-------------TETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------------~~~~~~~~~~~~~l~   67 (202)
                      ||++++..+++.||.|+.....    ....++..+.......+|+|++...+             +..+++++++++.+.
T Consensus        39 V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~  114 (360)
T 3e3p_A           39 VQLGKEKSTGMSVAIKKVIQDP----RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPDTLHR  114 (360)
T ss_dssp             CEEEEETTTCCEEEEEEEECCT----TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTCEEEEEEEECCSCBHHH
T ss_pred             EEEEEECCCCCEEEEEEEecCc----cccHHHHHHHHHHHhcCCCCcccHHHhhhccccccccceeEEEEeecccccHHH
Confidence            7899998888888887643221    11122333333445567888764221             145778888865332


Q ss_pred             hhh----ccCCCCHHHHHHHHHHHHHHHHHHH--hCCCCCeEEecCCCCcEEEcC-CCceEEeeeecceeccccCccccc
Q 044746           68 LLC----KKNILGFGQLREIEVSTSKGIAYLH--EECRQKIVHYDIKPESVLLDE-NFFPKAADFGLAKLYNREHTHITS  140 (202)
Q Consensus        68 ~~~----~~~~~~~~~~~~~~~~i~~~l~~lH--~~~~~~iiHrdlk~~nil~~~-~~~~kl~dfgl~~~~~~~~~~~~~  140 (202)
                      .+.    ....+++..+..++.|++.||.|||  +   .+|+||||||+||+++. ++.+||+|||+++.......   .
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~~~---~  188 (360)
T 3e3p_A          115 CCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPS---VNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEP---N  188 (360)
T ss_dssp             HHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTT---TCCBCSCCCGGGEEEETTTTEEEECCCTTCBCCCTTSC---C
T ss_pred             HHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCC---CCeecCcCCHHHEEEeCCCCcEEEeeCCCceecCCCCC---c
Confidence            222    3456899999999999999999999  8   99999999999999996 89999999999986554322   2


Q ss_pred             CCCCCCCcccCCcccCCCC-CCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          141 TGRRRTPGCEAPELWMPYS-VTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       141 ~~~~gt~~y~aPe~~~~~~-~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      ....||+.|+|||++.+.. ++.++||||+||+++||++|++||......
T Consensus       189 ~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~  238 (360)
T 3e3p_A          189 VAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSA  238 (360)
T ss_dssp             CSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             ccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChH
Confidence            3346799999999987654 899999999999999999999999876543

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.96  E-value=1.1e-30  Score=204.29  Aligned_cols=182  Identities=19%  Similarity=0.207  Sum_probs=137.5

Q ss_pred             CCccccC---CCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNR---GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++++.   +.+..|+.|+.....  ......++..|.......+|++++.     ..+...++++++++++|..++..
T Consensus        28 Vy~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~  105 (281)
T 3cc6_A           28 VYEGVYTNHKGEKINVAVKTCKKDC--TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPTWIIMELYPYGELGHYLER  105 (281)
T ss_dssp             EEEEEEECTTCCEEEEEEEECCTTS--CHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSSSCEEEEECCTTCBHHHHHHH
T ss_pred             EEEeEEcCCCCCcceEEEEeccccc--CchHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCEEEEecCCCCCHHHHHHh
Confidence            5676643   233456666543321  1122345667777777778898763     23345688999999999988854


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           73 --NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        73 --~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                        ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++......... ......+++.|+
T Consensus       106 ~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~  181 (281)
T 3cc6_A          106 NKNSLKVLTLVLYSLQICKAMAYLES---INCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYY-KASVTRLPIKWM  181 (281)
T ss_dssp             HTTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEEEETTEEEECCCCGGGCC----------CCCCCGGGC
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCccceEEECCCCcEEeCccCCCccccccccc-ccccCCCCccee
Confidence              359999999999999999999999   99999999999999999999999999999865433221 123345688999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |||.+.+..++.++|+||+|++++||++ |+.||.....
T Consensus       182 aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~  220 (281)
T 3cc6_A          182 SPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLEN  220 (281)
T ss_dssp             CHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCG
T ss_pred             CchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCCh
Confidence            9999988889999999999999999998 9999975443

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.96  E-value=8.9e-31  Score=225.62  Aligned_cols=183  Identities=17%  Similarity=0.257  Sum_probs=139.9

Q ss_pred             CCccccC--CCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc-----cccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNR--GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS-----EDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||++..+  ..+..||+|+.+..  ........|..|..+....+|+|++..     .....++++++.+|+|..++.. 
T Consensus       352 Vy~~~~~~~~~~~~vAvK~~~~~--~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~lv~E~~~~g~L~~~l~~~  429 (613)
T 2ozo_A          352 VRQGVYRMRKKQIDVAIKVLKQG--TEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGK  429 (613)
T ss_dssp             EEEEEEECSSCEEEEEEEECCCC--CSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEESSSEEEEEECCTTCBHHHHHTTC
T ss_pred             EEEEEEecCCCcEEEEEEEcCCC--CChHHHHHHHHHHHHHHhCCCCCEeeEEEEeccCCeEEEEEeCCCCcHHHHHhhc
Confidence            5666543  34556777765432  122234557778888888899988742     2345689999999999988853 


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc-ccCCCCCCCccc
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-TSTGRRRTPGCE  150 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~gt~~y~  150 (202)
                       ..+++..+..++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+++......... ......+++.|+
T Consensus       430 ~~~l~~~~~~~i~~qi~~~L~~LH~---~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~  506 (613)
T 2ozo_A          430 REEIPVSNVAELLHQVSMGMKYLEE---KNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWY  506 (613)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--------------CCTTS
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHH---CCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCcccee
Confidence             459999999999999999999999   999999999999999999999999999998654332211 122234568899


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |||++....++.++|||||||++|||++ |+.||.....
T Consensus       507 APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~  545 (613)
T 2ozo_A          507 APECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG  545 (613)
T ss_dssp             CHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCS
T ss_pred             CHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCH
Confidence            9999988899999999999999999998 9999987544

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.96  E-value=1.1e-30  Score=217.70  Aligned_cols=179  Identities=26%  Similarity=0.364  Sum_probs=137.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhcc---
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKK---   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~---   72 (202)
                      ||++++.+... ||.|+.+...    .....|..|..+....+|++++.     ......++++++++|+|..++..   
T Consensus       200 Vy~~~~~~~~~-vavK~~~~~~----~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~iv~e~~~~gsL~~~l~~~~~  274 (452)
T 1fmk_A          200 VWMGTWNGTTR-VAIKTLKPGT----MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETG  274 (452)
T ss_dssp             EEEEEETTTEE-EEEEECCTTS----SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTCBHHHHHSHHHH
T ss_pred             EEEEEECCCce-EEEEEeccCC----CCHHHHHHHHHHHHhCCCCCEeeEEEEEcCCceEEEehhhcCCCHHHHHHhcCC
Confidence            67777766544 5555443221    12345777888888889998763     22445689999999999998864   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++.++..++.|++.||.|||+   ++++||||||+|||++.++.+||+|||+++........ ......+++.|+||
T Consensus       275 ~~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~-~~~~~~~~~~y~aP  350 (452)
T 1fmk_A          275 KYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAP  350 (452)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCTTC---------------CCGGGSCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChhhEEECCCCCEEECCCccceecCCCcee-cccCCcccccccCH
Confidence            459999999999999999999999   99999999999999999999999999999865432211 12334457889999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |.+....++.++||||||+++|||++ |+.||.+...
T Consensus       351 E~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~  387 (452)
T 1fmk_A          351 EAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN  387 (452)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH
T ss_pred             hHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCH
Confidence            99988889999999999999999999 9999976543

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.96  E-value=1.7e-30  Score=211.29  Aligned_cols=176  Identities=19%  Similarity=0.226  Sum_probs=136.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc------c------ceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED------T------ETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------~------~~~~~~~~~~~~l~~   68 (202)
                      ||++++..+++.||.|+....... .....++..|.......+|+|++...+      .      ..++++++. ++|..
T Consensus        58 Vy~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~  135 (371)
T 4exu_A           58 VCSAIDKRSGEKVAIKKLSRPFQS-EIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQK  135 (371)
T ss_dssp             EEEEEETTTTEEEEEEEECSTTSS-HHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCCCEEEEECCC-EEHHH
T ss_pred             EEEEEECCCCCEEEEEEecccccc-hhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccceeEEEEEcccc-ccHHH
Confidence            688999888888888765432111 112344566777778888998774211      1      167777777 57777


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      ... ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+++.....     .....||+.
T Consensus       136 ~~~-~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~-----~~~~~~t~~  206 (371)
T 4exu_A          136 IMG-MEFSEEKIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFGLARHADAE-----MTGYVVTRW  206 (371)
T ss_dssp             HTT-SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECSTTCC-------------CTTCCCT
T ss_pred             Hhh-cCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCcCHHHeEECCCCCEEEEecCcccccccC-----cCCcccCcc
Confidence            664 459999999999999999999999   99999999999999999999999999999864332     234567999


Q ss_pred             ccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          149 CEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       149 y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |+|||++.+ ..++.++||||+||++++|++|+.||.+..
T Consensus       207 y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  246 (371)
T 4exu_A          207 YRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD  246 (371)
T ss_dssp             TSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             ccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999887 678999999999999999999999998654

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.96  E-value=5.2e-30  Score=204.26  Aligned_cols=180  Identities=21%  Similarity=0.296  Sum_probs=136.4

Q ss_pred             CCccccC-CCcceeehhhhchhhhhccCCcccCCcHHHHHHh---ccccccccc-----------cccceEEEEEccCCc
Q 044746            1 MEKPRNR-GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAA---DNFSNLVGS-----------EDTETYIKGFLAMGP   65 (202)
Q Consensus         1 v~k~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~-----------~~~~~~~~~~~~~~~   65 (202)
                      ||++++. .+++.||.|+.+..... ......+..|......   .+|++++..           .....++++++. ++
T Consensus        27 V~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~  104 (326)
T 1blx_A           27 VFKARDLKNGGRFVALKRVRVQTGE-EGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-QD  104 (326)
T ss_dssp             EEEEEETTTTTEEEEEEEEEEEBCT-TSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECCS-CB
T ss_pred             EEEEEecCCCCEEEEEEEeccCccc-ccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCCceEEEEEecCC-CC
Confidence            6888884 66777887765433221 1112233334333332   378877642           233457777777 68


Q ss_pred             hhhhhcc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCC
Q 044746           66 FYLLCKK---NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTG  142 (202)
Q Consensus        66 l~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~  142 (202)
                      |..++..   ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++......   ....
T Consensus       105 L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~gi~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~---~~~~  178 (326)
T 1blx_A          105 LTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQM---ALTS  178 (326)
T ss_dssp             HHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGG---GGCC
T ss_pred             HHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCCHHHeEEcCCCCEEEecCcccccccCCC---Cccc
Confidence            8777754   349999999999999999999999   999999999999999999999999999998654322   2234


Q ss_pred             CCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          143 RRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       143 ~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ..||+.|+|||++.+..++.++||||+|+++++|++|++||.....
T Consensus       179 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  224 (326)
T 1blx_A          179 VVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSD  224 (326)
T ss_dssp             CCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             cccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCH
Confidence            5679999999999988999999999999999999999999986543

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.96  E-value=1.5e-30  Score=206.81  Aligned_cols=181  Identities=18%  Similarity=0.217  Sum_probs=141.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc----------ccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE----------DTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----------~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++++...++.||.|+......   .....+..|.......+|++++...          ....++++++.+++|..++
T Consensus        45 V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l  121 (317)
T 2buj_A           45 VDLVEGLHDGHFYALKRILCHEQ---QDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEI  121 (317)
T ss_dssp             EEEEEETTTCCEEEEEEEEESSH---HHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEEEECCTTCBHHHHH
T ss_pred             EEEEEecCCCcEEEEEEEecCCH---HHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEEEEeCCCCcHHHHH
Confidence            68888888888888876433211   1233466777777888899876432          2445889999999998877


Q ss_pred             cc-----CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc-------
Q 044746           71 KK-----NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-------  138 (202)
Q Consensus        71 ~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~-------  138 (202)
                      ..     ..+++.++..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++..........       
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  198 (317)
T 2buj_A          122 ERLKDKGNFLTEDQILWLLLGICRGLEAIHA---KGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQ  198 (317)
T ss_dssp             HHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHH
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEcCCCCEEEEecCcchhccccccccccccccc
Confidence            53     569999999999999999999999   999999999999999999999999999987543211100       


Q ss_pred             ccCCCCCCCcccCCcccCCCC---CCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          139 TSTGRRRTPGCEAPELWMPYS---VTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       139 ~~~~~~gt~~y~aPe~~~~~~---~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ......||+.|+|||++.+..   ++.++||||+|++++||++|+.||....
T Consensus       199 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~  250 (317)
T 2buj_A          199 DWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVF  250 (317)
T ss_dssp             HHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHH
T ss_pred             ccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhh
Confidence            011234689999999987654   6889999999999999999999997643

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.96  E-value=1.4e-30  Score=208.16  Aligned_cols=182  Identities=20%  Similarity=0.269  Sum_probs=145.0

Q ss_pred             CCccc----cCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhh
Q 044746            1 MEKPR----NRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~   68 (202)
                      ||+++    +...++.|+.|+......   .....+..|.......+|++++..        .....++++++++++|..
T Consensus        39 V~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~  115 (327)
T 3lxl_A           39 VELCRYDPLGDNTGALVAVKQLQHSGP---DQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRD  115 (327)
T ss_dssp             EEEEEECTTSSSCSEEEEEEEESSCCH---HHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEEEEEECCTTCBHHH
T ss_pred             EEEEEeccCCCCcceEEEEEEeccCCH---HHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEEEEEeecCCCCHHH
Confidence            56666    667777788776543221   122346677777788888887642        233558899999999998


Q ss_pred             hhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc-cccCCCCC
Q 044746           69 LCKK--NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-ITSTGRRR  145 (202)
Q Consensus        69 ~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~g  145 (202)
                      ++..  ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++......... .......|
T Consensus       116 ~l~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~  192 (327)
T 3lxl_A          116 FLQRHRARLDASRLLLYSSQICKGMEYLGS---RRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQS  192 (327)
T ss_dssp             HHHHHGGGCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCS
T ss_pred             HHHhcccCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCChhhEEECCCCCEEEcccccceecccCCccceeeccCCc
Confidence            8864  459999999999999999999999   99999999999999999999999999999876543322 22334557


Q ss_pred             CCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          146 TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       146 t~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |+.|+|||.+.+..++.++||||+|+++++|++|+.||.....
T Consensus       193 ~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~  235 (327)
T 3lxl_A          193 PIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSA  235 (327)
T ss_dssp             CGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHH
T ss_pred             cccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccc
Confidence            8889999999888889999999999999999999999976554

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.96  E-value=2.7e-30  Score=201.85  Aligned_cols=179  Identities=23%  Similarity=0.325  Sum_probs=140.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhccC--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKKN--   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~~--   73 (202)
                      ||++++.++. .|+.|+.+...    .....+..|.......+|++++.     ..+...++++++++++|..++...  
T Consensus        29 Vy~~~~~~~~-~vavK~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~  103 (279)
T 1qpc_A           29 VWMGYYNGHT-KVAVKSLKQGS----MSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSG  103 (279)
T ss_dssp             EEEEEETTTE-EEEEEEECTTS----SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHHHTTSHHH
T ss_pred             EEEEEEcCCc-EEEEEEecCCc----ccHHHHHHHHHHHHhCCCcCcceEEEEEcCCCcEEEEecCCCCCHHHHHhcCCC
Confidence            5777766544 45554432211    12345667777777888888763     234456899999999999988654  


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                       .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++......... ......+++.|+||
T Consensus       104 ~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aP  179 (279)
T 1qpc_A          104 IKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYT-AREGAKFPIKWTAP  179 (279)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEE-CCTTCCCCTTTSCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHhhEEEcCCCCEEECCCcccccccCcccc-cccCCCCccCccCh
Confidence             69999999999999999999999   99999999999999999999999999999876543221 22334567889999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |.+.+..++.++|+||+|++++||++ |+.||.....
T Consensus       180 E~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~  216 (279)
T 1qpc_A          180 EAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN  216 (279)
T ss_dssp             HHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH
T ss_pred             hhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCH
Confidence            99988888999999999999999999 9999976443

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.96  E-value=1.2e-30  Score=205.65  Aligned_cols=183  Identities=19%  Similarity=0.217  Sum_probs=129.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc---
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK---   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~---   71 (202)
                      ||++++...++.|+.|+......  .....++..|.......+|++++.      ..+...++++++++++|..++.   
T Consensus        31 V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  108 (303)
T 2vwi_A           31 VQAAYCAPKKEKVAIKRINLEKC--QTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIV  108 (303)
T ss_dssp             EEEEEC----CEEEEECCC------------------CCCCCCCTTBCCEEEEEESSSCEEEEEECCTTCBHHHHHHHHH
T ss_pred             EEEEEECCCCcEEEEEEEEhhhc--chhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEehhccCCchHHHHHHHh
Confidence            67888887788888776543221  122334556666666667887763      3345678999999999988874   


Q ss_pred             ------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc---ccccCC
Q 044746           72 ------KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT---HITSTG  142 (202)
Q Consensus        72 ------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~---~~~~~~  142 (202)
                            ...+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++........   ......
T Consensus       109 ~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  185 (303)
T 2vwi_A          109 AKGEHKSGVLDESTIATILREVLEGLEYLHK---NGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKT  185 (303)
T ss_dssp             HTTTTTTCSSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTCCEEECCCHHHHHCC-------------
T ss_pred             hccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCCCCCCCChhhEEEcCCCCEEEEeccchheeccCCCccchhhhcc
Confidence                  3459999999999999999999999   9999999999999999999999999999875533211   111233


Q ss_pred             CCCCCcccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          143 RRRTPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       143 ~~gt~~y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ..||+.|+|||++.+ ..++.++|+||+|++++||++|+.||.....
T Consensus       186 ~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  232 (303)
T 2vwi_A          186 FVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPP  232 (303)
T ss_dssp             --CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCG
T ss_pred             cCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCch
Confidence            467999999999865 4688999999999999999999999976543

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.96  E-value=3.7e-30  Score=203.64  Aligned_cols=177  Identities=20%  Similarity=0.263  Sum_probs=141.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||++++..+++.|+.|+.+....   .....+..|.......+|++++.      ..+...++++++++++|..++. .+
T Consensus        25 V~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  101 (304)
T 2jam_A           25 VFLVKQRLTGKLFALKCIKKSPA---FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERG  101 (304)
T ss_dssp             EEEEEETTTCCEEEEEEEECC---------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHS
T ss_pred             EEEEEECCCCCEEEEEEEecccc---cchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcCCCccHHHHHHHcC
Confidence            68888888888888877543321   12234666777777888898763      3445568889999999987764 45


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEE---cCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL---DENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~---~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      .+++..+..++.|++.||.|||+   .+++||||||+||++   +.++.++|+|||++........    ....||+.|+
T Consensus       102 ~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~----~~~~~~~~y~  174 (304)
T 2jam_A          102 VYTEKDASLVIQQVLSAVKYLHE---NGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIM----STACGTPGYV  174 (304)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBTT----HHHHSCCCBC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCcc----ccccCCCCcc
Confidence            79999999999999999999999   999999999999999   7788999999999875433211    2234699999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |||.+.+..++.++|+||+|+++++|++|+.||....
T Consensus       175 aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  211 (304)
T 2jam_A          175 APEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEET  211 (304)
T ss_dssp             CTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred             ChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC
Confidence            9999999899999999999999999999999997654

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.96  E-value=7.7e-31  Score=209.63  Aligned_cols=183  Identities=21%  Similarity=0.239  Sum_probs=136.4

Q ss_pred             CCccc-----cCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhh
Q 044746            1 MEKPR-----NRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||+++     +..++..||.|+.....  ......++..|.......+|++++.      .....+++++++++++|..+
T Consensus        46 Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~  123 (327)
T 2yfx_A           46 VYEGQVSGMPNDPSPLQVAVKTLPEVC--SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSF  123 (327)
T ss_dssp             EEEEEC--------CCEEEEEECCSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHH
T ss_pred             EEEEEEcCCCCCCccceEEEEEecccc--chhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcEEEEecCCCCcHHHH
Confidence            56666     44556667776643221  1112234666777777788998763      33455789999999999998


Q ss_pred             hccC--------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC---CCceEEeeeecceeccccCccc
Q 044746           70 CKKN--------ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHI  138 (202)
Q Consensus        70 ~~~~--------~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~---~~~~kl~dfgl~~~~~~~~~~~  138 (202)
                      +...        .+++..+..++.|++.||.|||+   .+++||||||+||+++.   +..++|+|||++..........
T Consensus       124 l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~---~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~  200 (327)
T 2yfx_A          124 LRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYR  200 (327)
T ss_dssp             HHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC-----
T ss_pred             HHhhcccccccccccHHHHHHHHHHHHHHHHHHhh---CCeecCcCCHhHEEEecCCCcceEEECccccccccccccccc
Confidence            8653        38999999999999999999999   99999999999999984   4569999999997544333222


Q ss_pred             ccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       139 ~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ......|++.|+|||.+.+..++.++||||+|+++++|++ |+.||.....
T Consensus       201 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~  251 (327)
T 2yfx_A          201 KGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN  251 (327)
T ss_dssp             -CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH
T ss_pred             cCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCH
Confidence            2333456889999999988889999999999999999998 9999976543

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.96  E-value=2e-30  Score=205.77  Aligned_cols=181  Identities=15%  Similarity=0.239  Sum_probs=140.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc--------------------ccceEEEEE
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE--------------------DTETYIKGF   60 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------------------~~~~~~~~~   60 (202)
                      ||++++...++.||.|.......   .....+..|.......+|++++...                    ....+++++
T Consensus        27 V~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~  103 (320)
T 2i6l_A           27 VFSAVDNDCDKRVAIKKIVLTDP---QSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEY  103 (320)
T ss_dssp             EEEEEETTTTEEEEEEEEECCSH---HHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----CCSCSEEEEEEEC
T ss_pred             EEEEEECCCCeEEEEEEEecCCh---HHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccccccccCceeEEeec
Confidence            68888888888888776433211   1223456677777888899876432                    334578888


Q ss_pred             ccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc-CCCceEEeeeecceeccccCcc-c
Q 044746           61 LAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD-ENFFPKAADFGLAKLYNREHTH-I  138 (202)
Q Consensus        61 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~-~~~~~kl~dfgl~~~~~~~~~~-~  138 (202)
                      +. ++|..++..+.+++..+..++.|++.||.|||+   .+++||||||+||+++ .++.+||+|||+++........ .
T Consensus       104 ~~-~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~  179 (320)
T 2i6l_A          104 ME-TDLANVLEQGPLLEEHARLFMYQLLRGLKYIHS---ANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKG  179 (320)
T ss_dssp             CS-EEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTTEEEECCCTTCBCC--------
T ss_pred             cC-CCHHHHhhcCCccHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCeEEEccCccccccCCCccccc
Confidence            87 689999988899999999999999999999999   9999999999999997 5679999999999865432111 1


Q ss_pred             ccCCCCCCCcccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          139 TSTGRRRTPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       139 ~~~~~~gt~~y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ......+++.|+|||.+.. ..++.++|+||+|++++||++|+.||.....
T Consensus       180 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~  230 (320)
T 2i6l_A          180 HLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHE  230 (320)
T ss_dssp             CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             ccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCH
Confidence            1223456889999998765 6789999999999999999999999986554

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=1.4e-30  Score=204.50  Aligned_cols=183  Identities=18%  Similarity=0.274  Sum_probs=141.7

Q ss_pred             CCcccc--CCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhc--
Q 044746            1 MEKPRN--RGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCK--   71 (202)
Q Consensus         1 v~k~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~--   71 (202)
                      ||++.+  ...+..|+.|+.+...  .......+..|.......+|++++.     ..+...++++++++++|..++.  
T Consensus        26 Vy~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  103 (287)
T 1u59_A           26 VRQGVYRMRKKQIDVAIKVLKQGT--EKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGK  103 (287)
T ss_dssp             EEEEEEC---CCEEEEEEEECSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHHHTTC
T ss_pred             EEEeEeccCCCcceEEEEecCCcc--chhHHHHHHHHHHHHHhCCCCCEeEEEEEecCCCcEEEEEeCCCCCHHHHHHhC
Confidence            566654  3455667766654321  1122345667777777788998764     3344568899999999999884  


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc-ccCCCCCCCccc
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-TSTGRRRTPGCE  150 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~gt~~y~  150 (202)
                      ...+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.......... ......+|+.|+
T Consensus       104 ~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~  180 (287)
T 1u59_A          104 REEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWY  180 (287)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGC
T ss_pred             CccCCHHHHHHHHHHHHHHHHHHHH---CCEeeCCCchheEEEcCCCCEEECcccceeeeccCcceeecccccccccccc
Confidence            3459999999999999999999999   999999999999999999999999999998764332221 123345688999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |||.+.+..++.++|+||+|++++||++ |+.||.....
T Consensus       181 aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~  219 (287)
T 1u59_A          181 APECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG  219 (287)
T ss_dssp             CHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT
T ss_pred             CHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCH
Confidence            9999988889999999999999999998 9999976543

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.96  E-value=1.3e-30  Score=204.49  Aligned_cols=180  Identities=21%  Similarity=0.251  Sum_probs=145.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++...+..|+.|+.....    .....+..|.......+|++++.      ......++++++++++|..++..  
T Consensus        29 V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~  104 (288)
T 3kfa_A           29 VYEGVWKKYSLTVAVKTLKEDT----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECN  104 (288)
T ss_dssp             EEEEEEGGGTEEEEEEEECSCS----THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHCC
T ss_pred             EEEeEecCCCEEEEEEecCcCH----HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEEcCCCCcHHHHHHhcc
Confidence            6888888888888877654321    12334667777778888898763      34455688999999999988854  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++........ .......+|+.|+|
T Consensus       105 ~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~-~~~~~~~~~~~y~a  180 (288)
T 3kfa_A          105 RQEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY-TAHAGAKFPIKWTA  180 (288)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHH---HTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSS-EEETTEEECGGGCC
T ss_pred             cCCccHhHHHHHHHHHHHHHHHHHH---CCccCCCCCcceEEEcCCCCEEEccCccceeccCCcc-ccccCCccccCcCC
Confidence             459999999999999999999999   9999999999999999999999999999986543322 22233456788999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ||.+.+..++.++|+||+|+++++|++ |.+||.....
T Consensus       181 PE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~  218 (288)
T 3kfa_A          181 PESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL  218 (288)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred             hhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            999988889999999999999999999 9999976543

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.96  E-value=1.3e-30  Score=205.03  Aligned_cols=184  Identities=21%  Similarity=0.303  Sum_probs=141.4

Q ss_pred             CCcc--ccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhccC
Q 044746            1 MEKP--RNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKKN   73 (202)
Q Consensus         1 v~k~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~~   73 (202)
                      ||++  +....++.|+.|+.+.... ......++..|.......+|++++.     ..+...++++++++++|..++...
T Consensus        33 Vy~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  111 (291)
T 1xbb_A           33 VKKGYYQMKKVVKTVAVKILKNEAN-DPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQN  111 (291)
T ss_dssp             EEEEEEECSSSEEEEEEEEEC------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHHHHHC
T ss_pred             eEeeeecCCCceeeEEEEeeccccc-CHHHHHHHHHHHHHHHhCCCCCEEEEEEEECCCCcEEEEEeCCCCCHHHHHHhC
Confidence            5677  4455667777776543321 1122345677777788888898763     334456889999999999888654


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc-ccCCCCCCCcccC
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-TSTGRRRTPGCEA  151 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~gt~~y~a  151 (202)
                       .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.......... ......+++.|+|
T Consensus       112 ~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  188 (291)
T 1xbb_A          112 RHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYA  188 (291)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHh---CCeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceeeC
Confidence             59999999999999999999999   999999999999999999999999999998764433221 1222345788999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ||.+.+..++.++|+||+|+++++|++ |+.||.....
T Consensus       189 PE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~  226 (291)
T 1xbb_A          189 PECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG  226 (291)
T ss_dssp             HHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCH
T ss_pred             hHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCH
Confidence            999988888999999999999999999 9999986543

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.96  E-value=2.4e-30  Score=206.72  Aligned_cols=181  Identities=21%  Similarity=0.261  Sum_probs=120.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-cccccccccc--------------cceEEEEEccCCc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVGSED--------------TETYIKGFLAMGP   65 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~--------------~~~~~~~~~~~~~   65 (202)
                      ||++++...++.||.|+......   .....+..|....... +|++++...+              ...++++++. |+
T Consensus        44 V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-g~  119 (337)
T 3ll6_A           44 VYEAQDVGSGREYALKRLLSNEE---EKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCK-GQ  119 (337)
T ss_dssp             EEEEEETTTCCEEEEEEEEESSH---HHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEEEEEEEECCS-EE
T ss_pred             EEEEEECCCCcEEEEEEecCCch---HHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCceEEEEEEecC-CC
Confidence            68899888888888875432211   1122344555555554 5888764321              1346666665 77


Q ss_pred             hhhhhc----cCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEecCCCCcEEEcCCCceEEeeeecceeccccCccc-
Q 044746           66 FYLLCK----KNILGFGQLREIEVSTSKGIAYLHEECRQK--IVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-  138 (202)
Q Consensus        66 l~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~--iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~-  138 (202)
                      |..++.    ...+++..+..++.|++.||.|||+   .+  ++||||||+||+++.++.+||+|||+++......... 
T Consensus       120 L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~  196 (337)
T 3ll6_A          120 LVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHR---QKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSW  196 (337)
T ss_dssp             HHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHT---SSSCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC----
T ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh---CCCCEEEccCCcccEEECCCCCEEEecCccceeccccCcccc
Confidence            777663    3569999999999999999999999   88  9999999999999999999999999998654322111 


Q ss_pred             ---------ccCCCCCCCcccCCccc---CCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          139 ---------TSTGRRRTPGCEAPELW---MPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       139 ---------~~~~~~gt~~y~aPe~~---~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                               ......||+.|+|||++   .+..++.++||||||+++++|++|+.||.....
T Consensus       197 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~  258 (337)
T 3ll6_A          197 SAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAK  258 (337)
T ss_dssp             ---------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-----
T ss_pred             cccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhH
Confidence                     11134579999999998   566788999999999999999999999976543

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.96  E-value=4.1e-30  Score=209.80  Aligned_cols=177  Identities=18%  Similarity=0.218  Sum_probs=132.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-cccc-----cc------cccccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSN-----LV------GSEDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~i------~~~~~~~~~~~~~~~~~l~~   68 (202)
                      ||++++..+++.||.|+.+.....    ...+..|....... .+++     ++      ...+...++++++. ++|..
T Consensus        70 V~~~~~~~~~~~vaiK~~~~~~~~----~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~  144 (382)
T 2vx3_A           70 VVKAYDRVEQEWVAIKIIKNKKAF----LNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLS-YNLYD  144 (382)
T ss_dssp             EEEEEETTTTEEEEEEEECSSHHH----HHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEEEEEEECCC-CBHHH
T ss_pred             EEEEEEcCCCcEEEEEEEeccHHH----HHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCceEEEEecCC-CCHHH
Confidence            789999888888998876432211    11222233222222 1221     32      13345568888886 58877


Q ss_pred             hhccC---CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc--CCCceEEeeeecceeccccCcccccCCC
Q 044746           69 LCKKN---ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD--ENFFPKAADFGLAKLYNREHTHITSTGR  143 (202)
Q Consensus        69 ~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~--~~~~~kl~dfgl~~~~~~~~~~~~~~~~  143 (202)
                      ++...   .+++..+..++.|++.||.|||+. ..+|+||||||+|||++  .++.+||+|||+++.....     ....
T Consensus       145 ~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~~-----~~~~  218 (382)
T 2vx3_A          145 LLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQR-----IYQY  218 (382)
T ss_dssp             HHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTCC-----CCSS
T ss_pred             HHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccCceecccc-----cccc
Confidence            77543   599999999999999999999941 17999999999999995  4788999999999876432     2335


Q ss_pred             CCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .||+.|+|||++.+..++.++||||+||+++||++|++||.....
T Consensus       219 ~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~  263 (382)
T 2vx3_A          219 IQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANE  263 (382)
T ss_dssp             CSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             cCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            679999999999999999999999999999999999999987554

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.96  E-value=4.6e-30  Score=204.69  Aligned_cols=179  Identities=23%  Similarity=0.257  Sum_probs=134.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-cccccccc------------cccceEEEEEccCCchh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVGS------------EDTETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~------------~~~~~~~~~~~~~~~l~   67 (202)
                      ||++++..+++.|+.|+.....    .....+..|....... +|++++..            .....++++++++++|.
T Consensus        40 Vy~~~~~~~~~~vaiK~~~~~~----~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~  115 (326)
T 2x7f_A           40 VYKGRHVKTGQLAAIKVMDVTG----DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVT  115 (326)
T ss_dssp             EEEEEETTTCCEEEEEEEECCS----STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCEEEEEEECCTTEEHH
T ss_pred             EEEEEECCCCCeEEEEEEecCc----ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccceEEEEEEcCCCCcHH
Confidence            6888888888888888754321    1223455555555444 68876531            34567889999999999


Q ss_pred             hhhcc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCC
Q 044746           68 LLCKK---NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRR  144 (202)
Q Consensus        68 ~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~  144 (202)
                      .++..   ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++........  ......
T Consensus       116 ~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~  190 (326)
T 2x7f_A          116 DLIKNTKGNTLKEEWIAYICREILRGLSHLHQ---HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVG--RRNTFI  190 (326)
T ss_dssp             HHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTCCEEECCCTTTC---------------
T ss_pred             HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCcHHHEEEcCCCCEEEeeCcCceecCcCcc--cccccc
Confidence            88864   469999999999999999999999   9999999999999999999999999999876543221  123346


Q ss_pred             CCCcccCCcccC-----CCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          145 RTPGCEAPELWM-----PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       145 gt~~y~aPe~~~-----~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ||+.|+|||++.     ...++.++||||+|+++++|++|+.||.....
T Consensus       191 ~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  239 (326)
T 2x7f_A          191 GTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHP  239 (326)
T ss_dssp             CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred             CCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcH
Confidence            799999999987     45688999999999999999999999976543

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.96  E-value=3.8e-30  Score=208.13  Aligned_cols=179  Identities=18%  Similarity=0.209  Sum_probs=129.1

Q ss_pred             CCccccCCCcceeehh-hhchhhhhcc-------CCcccCCcHHHHHHhccccccccccc-----------cceEEEEEc
Q 044746            1 MEKPRNRGSTRFITRT-IDKSLDAMEM-------DKPIRFTSPQRMIAADNFSNLVGSED-----------TETYIKGFL   61 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~~~   61 (202)
                      ||++++.. +..||.| +.........       ....++..|.......+|++++...+           ...++++++
T Consensus        38 V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~  116 (362)
T 3pg1_A           38 VCAGVDSE-GIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELM  116 (362)
T ss_dssp             EEEEECTT-SCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEEEECCTTTCCEEEEEEECC
T ss_pred             EEEEECCC-CCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeeeEEeccCCCcceEEEEEccC
Confidence            68888876 4445544 4322211110       01145667777888889998874322           236778888


Q ss_pred             cCCchhhhhccC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccc
Q 044746           62 AMGPFYLLCKKN--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHIT  139 (202)
Q Consensus        62 ~~~~l~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~  139 (202)
                      . +++...+...  .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++........   
T Consensus       117 ~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~---  189 (362)
T 3pg1_A          117 R-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHE---AGVVHRDLHPGNILLADNNDITICDFNLAREDTADAN---  189 (362)
T ss_dssp             S-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCTTC------------
T ss_pred             C-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH---CcCEecCCChHHEEEcCCCCEEEEecCcccccccccc---
Confidence            7 5666665443  59999999999999999999999   9999999999999999999999999999975433222   


Q ss_pred             cCCCCCCCcccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          140 STGRRRTPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       140 ~~~~~gt~~y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      .....||+.|+|||++.+ ..++.++|+||+||++++|++|+.||....
T Consensus       190 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~  238 (362)
T 3pg1_A          190 KTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGST  238 (362)
T ss_dssp             ------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             cceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCC
Confidence            233457899999999876 678999999999999999999999998654

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.96  E-value=4.3e-31  Score=206.27  Aligned_cols=182  Identities=20%  Similarity=0.246  Sum_probs=141.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++++..+++.|+.|+....... ......+..|.......+|++++..        .....++++++++++|..++..
T Consensus        22 V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~  100 (279)
T 2w5a_A           22 CQKIRRKSDGKILVWKELDYGSMT-EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITK  100 (279)
T ss_dssp             EEEEEETTTCCEEEEEEEECTTCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEEEECCTTEEHHHHHHH
T ss_pred             EEEEEECCCCcEEEEEEEEcccCC-HHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEEEeCCCCCCHHHHHHh
Confidence            688888888888887765432211 1123456677777777888987632        3345788999999999888753


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHhCCCCC-----eEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCC
Q 044746           73 -----NILGFGQLREIEVSTSKGIAYLHEECRQK-----IVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTG  142 (202)
Q Consensus        73 -----~~~~~~~~~~~~~~i~~~l~~lH~~~~~~-----iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~  142 (202)
                           ..+++..+..++.|++.||.|||+   .+     ++||||||+||+++.++.++|+|||+++........  ...
T Consensus       101 ~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~~~~--~~~  175 (279)
T 2w5a_A          101 GTKERQYLDEEFVLRVMTQLTLALKECHR---RSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSF--AKT  175 (279)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHHHHHHH---HC------CCCCCSGGGEEECSSSCEEECCCCHHHHC---CHH--HHH
T ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHHhc---ccCCCCeeEEeccchhhEEEcCCCCEEEecCchheeecccccc--ccc
Confidence                 249999999999999999999999   77     999999999999999999999999999765432211  112


Q ss_pred             CCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          143 RRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       143 ~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ..|++.|+|||.+.+..++.++|+||+|+++++|++|+.||.....
T Consensus       176 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  221 (279)
T 2w5a_A          176 FVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ  221 (279)
T ss_dssp             HHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             cCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCH
Confidence            3568999999999988899999999999999999999999986543

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=2.3e-30  Score=207.70  Aligned_cols=182  Identities=20%  Similarity=0.283  Sum_probs=133.4

Q ss_pred             CCccccCCCc----ceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGST----RFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++++...+    ..|+.|+.+...  .......+..|.......+|++++.      ......++++++++++|..++
T Consensus        60 Vy~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l  137 (333)
T 1mqb_A           60 VYKGMLKTSSGKKEVPVAIKTLKAGY--TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFL  137 (333)
T ss_dssp             EEEEEEEC---CCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHH
T ss_pred             EEEEEEecCCCCccccEEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEEEEeCCCCCcHHHHH
Confidence            5677665433    236655543221  1112234666777777888898763      344567899999999999988


Q ss_pred             cc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc-ccccCCCCCCC
Q 044746           71 KK--NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT-HITSTGRRRTP  147 (202)
Q Consensus        71 ~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~gt~  147 (202)
                      ..  ..+++.++..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++....... ........+|+
T Consensus       138 ~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~  214 (333)
T 1mqb_A          138 REKDGEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPI  214 (333)
T ss_dssp             HHTTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCG
T ss_pred             HhCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChheEEECCCCcEEECCCCcchhhccccccccccCCCCccc
Confidence            64  469999999999999999999999   9999999999999999999999999999986543321 11122334578


Q ss_pred             cccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          148 GCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       148 ~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                      .|+|||.+.+..++.++||||+|++++||++ |+.||....
T Consensus       215 ~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~  255 (333)
T 1mqb_A          215 RWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELS  255 (333)
T ss_dssp             GGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             cccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCC
Confidence            8999999998899999999999999999999 999997544

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.96  E-value=3.8e-30  Score=207.68  Aligned_cols=176  Identities=19%  Similarity=0.227  Sum_probs=136.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc------------cceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED------------TETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------~~~~~~~~~~~~~l~~   68 (202)
                      ||++++..+++.||.|+...... ......++..|.......+|++++...+            ...++++++. ++|..
T Consensus        40 V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~  117 (353)
T 3coi_A           40 VCSAIDKRSGEKVAIKKLSRPFQ-SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQK  117 (353)
T ss_dssp             EEEEEETTTTEEEEEEEESSTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECCS-EEGGG
T ss_pred             EEEEEECCCCCEEEEEEeccccc-chHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccceeEEEEecccc-CCHHH
Confidence            68899888888888876533211 1112234566777777888998774211            1267777776 57777


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      +... .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++.....     .....||+.
T Consensus       118 ~~~~-~~~~~~~~~i~~qi~~al~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~t~~  188 (353)
T 3coi_A          118 IMGL-KFSEEKIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFGLARHADAE-----MTGYVVTRW  188 (353)
T ss_dssp             TTTS-CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTCCEEECSTTCTTC-------------CCSBC
T ss_pred             HhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEeECCCCcEEEeecccccCCCCC-----ccccccCcC
Confidence            6643 59999999999999999999999   99999999999999999999999999999764322     233467999


Q ss_pred             ccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          149 CEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       149 y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |+|||++.+ ..++.++|+||+|+++++|++|+.||.+..
T Consensus       189 y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  228 (353)
T 3coi_A          189 YRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD  228 (353)
T ss_dssp             CSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSC
T ss_pred             cCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999877 678999999999999999999999998654

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.96  E-value=4.6e-30  Score=201.81  Aligned_cols=178  Identities=17%  Similarity=0.161  Sum_probs=140.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++++..+++.|+.|.....   .......+..|.......+|++++.      ..+...++++++++++|..++... 
T Consensus        38 Vy~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  114 (295)
T 2clq_A           38 VYAGRDLSNQVRIAIKEIPER---DSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKW  114 (295)
T ss_dssp             EEEEEETTTCCEEEEEEEECC---CC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCSEEEHHHHHHHTT
T ss_pred             EEEEEECCCCeEEEEEEccCC---chHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCCCCCHHHHHHhhc
Confidence            688888888888888765432   1222345667777778888998764      334556889999999998888643 


Q ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC-CCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           74 ---ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE-NFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        74 ---~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                         .+++..+..++.|++.||.|||+   .+++|+||||+||+++. ++.++|+|||++........  ......|++.|
T Consensus       115 ~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y  189 (295)
T 2clq_A          115 GPLKDNEQTIGFYTKQILEGLKYLHD---NQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINP--CTETFTGTLQY  189 (295)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-------CCCCCCGGG
T ss_pred             cCCCccHHHHHHHHHHHHHHHHHHHh---CCEEccCCChhhEEEECCCCCEEEeecccccccCCCCC--cccccCCCccc
Confidence               46788999999999999999999   99999999999999987 89999999999986543221  12334679999


Q ss_pred             cCCcccCCC--CCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          150 EAPELWMPY--SVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       150 ~aPe~~~~~--~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      +|||++.+.  .++.++|+||+|+++++|++|+.||...
T Consensus       190 ~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  228 (295)
T 2clq_A          190 MAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYEL  228 (295)
T ss_dssp             CCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGG
T ss_pred             cChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCC
Confidence            999998754  3789999999999999999999999754

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.96  E-value=7.2e-30  Score=203.93  Aligned_cols=176  Identities=23%  Similarity=0.297  Sum_probs=134.3

Q ss_pred             CCcccc-CCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccc------cc------cccccceEEEEEccCCchh
Q 044746            1 MEKPRN-RGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSN------LV------GSEDTETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~i------~~~~~~~~~~~~~~~~~l~   67 (202)
                      ||++.+ ..+++.||+|+.+.....    ...+..|.......++++      ++      ...+...++++++ +++|.
T Consensus        30 V~~~~~~~~~~~~vavK~~~~~~~~----~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~l~  104 (339)
T 1z57_A           30 VVECIDHKAGGRHVAVKIVKNVDRY----CEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELL-GLSTY  104 (339)
T ss_dssp             EEEEEETTTTTEEEEEEEECSSHHH----HHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEEEEEEECC-CCBHH
T ss_pred             EEEEEecCCCCcEEEEEEEecCCch----hHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcEEEEEcCC-CCCHH
Confidence            678877 557788888875433211    122334444444433332      32      2345566888888 78888


Q ss_pred             hhhccC---CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC-------------------CCceEEeee
Q 044746           68 LLCKKN---ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE-------------------NFFPKAADF  125 (202)
Q Consensus        68 ~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~-------------------~~~~kl~df  125 (202)
                      .++...   .+++..+..++.|++.||.|||+   ++++||||||+||+++.                   ++.++|+||
T Consensus       105 ~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Df  181 (339)
T 1z57_A          105 DFIKENGFLPFRLDHIRKMAYQICKSVNFLHS---NKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDF  181 (339)
T ss_dssp             HHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCC
T ss_pred             HHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeC
Confidence            777544   58999999999999999999999   99999999999999987                   667999999


Q ss_pred             ecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       126 gl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |+++.....     .....||+.|+|||++.+..++.++||||+||+++||++|+.||......
T Consensus       182 g~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~  240 (339)
T 1z57_A          182 GSATYDDEH-----HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSK  240 (339)
T ss_dssp             SSCEETTSC-----CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHH
T ss_pred             cccccCccc-----cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChH
Confidence            999864332     23346799999999999989999999999999999999999999865543

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.96  E-value=2.3e-30  Score=203.20  Aligned_cols=185  Identities=18%  Similarity=0.246  Sum_probs=136.9

Q ss_pred             CCccccCC-C--cceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRG-S--TRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~-~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++++.. +  ...|+.|+.+.......+....+..|.......+|++++.     ......++++++++++|..++..
T Consensus        34 Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~  113 (291)
T 1u46_A           34 VRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRK  113 (291)
T ss_dssp             CEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHHHHHH
T ss_pred             EEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCCceeeEecccCCCHHHHHHh
Confidence            67776432 2  2246666544332222233445667777777788898763     22335688999999999888854


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc-ccCCCCCCCcc
Q 044746           73 --NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-TSTGRRRTPGC  149 (202)
Q Consensus        73 --~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~gt~~y  149 (202)
                        ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++.......... ......+|+.|
T Consensus       114 ~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y  190 (291)
T 1u46_A          114 HQGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAW  190 (291)
T ss_dssp             HGGGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGG
T ss_pred             ccCCcCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchheEEEcCCCCEEEccccccccccccccchhhhccCCCCcee
Confidence              459999999999999999999999   999999999999999999999999999998764432211 22334568889


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      +|||.+.+..++.++|+||+|+++++|++ |+.||.....
T Consensus       191 ~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~  230 (291)
T 1u46_A          191 CAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG  230 (291)
T ss_dssp             CCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH
T ss_pred             eCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCH
Confidence            99999988888999999999999999999 9999976543

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.96  E-value=2.2e-30  Score=203.19  Aligned_cols=177  Identities=19%  Similarity=0.196  Sum_probs=126.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc---
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK---   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~---   71 (202)
                      ||++++..+++.||.|+.+...... .....+..+.......+|++++.      ..+...++++++++ +|..++.   
T Consensus        23 V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~  100 (290)
T 3fme_A           23 VEKMRHVPSGQIMAVKRIRATVNSQ-EQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMDT-SLDKFYKQVI  100 (290)
T ss_dssp             EEEEEETTTTEEEEEEEEC---CHH-HHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEEECCSE-EHHHHHHHHH
T ss_pred             EEEEEecCCCeEEEEEEeecccCcH-HHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEEehhcc-chHHHHHHHH
Confidence            6889998888888887654332111 11222334444466678887763      34455688888874 6655542   


Q ss_pred             --cCCCCHHHHHHHHHHHHHHHHHHHhCCCC-CeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           72 --KNILGFGQLREIEVSTSKGIAYLHEECRQ-KIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        72 --~~~~~~~~~~~~~~~i~~~l~~lH~~~~~-~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                        ...+++..+..++.|++.||.|||+   . +++||||||+||+++.++.++|+|||++........   .....||+.
T Consensus       101 ~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~~t~~  174 (290)
T 3fme_A          101 DKGQTIPEDILGKIAVSIVKALEHLHS---KLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVA---KDIDAGCKP  174 (290)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHHHHHH---HSCCCCCCCSGGGCEECTTCCEEBCCC------------------CCCCC
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHHhh---cCCeecCCCCHHHEEECCCCCEEEeecCCccccccccc---ccccCCCcc
Confidence              4579999999999999999999999   7 999999999999999999999999999986544322   222357999


Q ss_pred             ccCCccc----CCCCCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          149 CEAPELW----MPYSVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       149 y~aPe~~----~~~~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      |+|||.+    ....++.++|+||+|+++++|++|+.||..
T Consensus       175 y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  215 (290)
T 3fme_A          175 YMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDS  215 (290)
T ss_dssp             CSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred             ccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccc
Confidence            9999996    456789999999999999999999999975

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.96  E-value=2.5e-30  Score=200.57  Aligned_cols=179  Identities=20%  Similarity=0.312  Sum_probs=139.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++..+.. |+.|+......    ....+..|.......+|++++.      ..+...++++++++++|..++..  
T Consensus        24 V~~~~~~~~~~-vaiK~~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~   98 (267)
T 3t9t_A           24 VHLGYWLNKDK-VAIKTIREGAM----SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQR   98 (267)
T ss_dssp             EEEEEETTTEE-EEEEEECTTTB----CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHHTT
T ss_pred             EEEEEecCCCe-EEEEEccccCC----CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCCCCcHHHHHhhCc
Confidence            57777765444 44444332211    1234666777777788888763      34456789999999999988865  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++........ .......+++.|+||
T Consensus        99 ~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~~y~aP  174 (267)
T 3t9t_A           99 GLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY-TSSTGTKFPVKWASP  174 (267)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHH-HSTTSTTCCGGGCCH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchheEEECCCCCEEEcccccccccccccc-cccccccccccccCh
Confidence            358999999999999999999999   9999999999999999999999999999986543221 122334567889999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |.+.+..++.++|+||+|+++++|++ |+.||.....
T Consensus       175 E~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~  211 (267)
T 3t9t_A          175 EVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN  211 (267)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH
T ss_pred             hhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCH
Confidence            99988889999999999999999999 8999976543

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.96  E-value=6.4e-30  Score=205.02  Aligned_cols=176  Identities=19%  Similarity=0.277  Sum_probs=134.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHh--ccccccccc------c----ccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAA--DNFSNLVGS------E----DTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~------~----~~~~~~~~~~~~~~l~~   68 (202)
                      ||++++.  ++.||.|+......      ..+..|..+...  .+|+|++..      .    ....++++++++++|..
T Consensus        58 Vy~~~~~--~~~vavK~~~~~~~------~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~  129 (342)
T 1b6c_B           58 VWRGKWR--GEEVAVKIFSSREE------RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFD  129 (342)
T ss_dssp             EEEEEET--TEEEEEEEECGGGH------HHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEEECCCTTCBHHH
T ss_pred             EEEEEEc--CccEEEEEeCchhH------HHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEEEeecCCCcHHH
Confidence            5777763  55666665432211      223334443433  678877631      1    25578899999999999


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHH--------hCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc--
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLH--------EECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI--  138 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH--------~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~--  138 (202)
                      ++....+++.++..++.|++.||.|||        +   .+++||||||+||+++.++.+||+|||++..........  
T Consensus       130 ~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~---~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~  206 (342)
T 1b6c_B          130 YLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGK---PAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDI  206 (342)
T ss_dssp             HHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCB---CEEECSCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEE
T ss_pred             HHhccCccHHHHHHHHHHHHHHHHHHHHHHhhhccc---CCeeeCCCCHHHEEECCCCCEEEEECCCceecccccccccc
Confidence            999889999999999999999999999        7   899999999999999999999999999998654433211  


Q ss_pred             ccCCCCCCCcccCCcccCCCC------CCchhhHHHHHHHHHHHHcC----------CCCCcchh
Q 044746          139 TSTGRRRTPGCEAPELWMPYS------VTQKCDVFSFGMLLFEVVGR----------RRNLEKEI  187 (202)
Q Consensus       139 ~~~~~~gt~~y~aPe~~~~~~------~~~~~Diws~G~~l~el~~g----------~~p~~~~~  187 (202)
                      ......||+.|+|||++.+..      ++.++||||||+++|||++|          +.||....
T Consensus       207 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~  271 (342)
T 1b6c_B          207 APNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLV  271 (342)
T ss_dssp             CCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTS
T ss_pred             ccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccC
Confidence            223456899999999997652      33689999999999999999          77887653

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.96  E-value=2.5e-30  Score=207.72  Aligned_cols=175  Identities=19%  Similarity=0.242  Sum_probs=118.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc---cc-------cccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV---GS-------EDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~-------~~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++++..+++.||.|+.......       ...........+|++++   +.       +....++++++++++|..++
T Consensus        45 V~~~~~~~~~~~vavK~~~~~~~~-------~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~~l  117 (336)
T 3fhr_A           45 VLECFHRRTGQKCALKLLYDSPKA-------RQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRI  117 (336)
T ss_dssp             EEEEEETTTCCEEEEEEEESSHHH-------HHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCTTEEHHHHH
T ss_pred             EEEEEECCCCCEEEEEEecCcHHH-------HHHHHHHHHhcCCCChHHHHHHHhhccCCCceEEEEEeccCCCCHHHHH
Confidence            688999988888888875432211       11122223444566554   22       23356889999999999888


Q ss_pred             ccC---CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC---CCceEEeeeecceeccccCcccccCCCC
Q 044746           71 KKN---ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHITSTGRR  144 (202)
Q Consensus        71 ~~~---~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~---~~~~kl~dfgl~~~~~~~~~~~~~~~~~  144 (202)
                      ...   .+++.++..++.|++.||.|||+   .+++||||||+||+++.   ++.++|+|||+++......    .....
T Consensus       118 ~~~~~~~l~~~~~~~i~~ql~~~l~~LH~---~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~----~~~~~  190 (336)
T 3fhr_A          118 QERGDQAFTEREAAEIMRDIGTAIQFLHS---HNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNA----LQTPC  190 (336)
T ss_dssp             HTC-CCCCBHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC-------------
T ss_pred             HhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEEecCCCceEEEeccccceeccccc----cccCC
Confidence            654   59999999999999999999999   99999999999999975   4569999999998654322    23345


Q ss_pred             CCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          145 RTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       145 gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      ||+.|+|||++.+..++.++||||+|+++++|++|+.||......
T Consensus       191 ~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~  235 (336)
T 3fhr_A          191 YTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQ  235 (336)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHHHSSCCC------
T ss_pred             CCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccch
Confidence            699999999998888999999999999999999999999765543

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.96  E-value=8.3e-30  Score=204.91  Aligned_cols=175  Identities=19%  Similarity=0.250  Sum_probs=130.1

Q ss_pred             CCccccCCCc-ceeehhhhchhhhhccCCcccCCcHHHHHHhccccc------cc------cccccceEEEEEccCCchh
Q 044746            1 MEKPRNRGST-RFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSN------LV------GSEDTETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~i------~~~~~~~~~~~~~~~~~l~   67 (202)
                      ||++++...+ ..||+|+.+.....    ...+..|........+++      ++      ...+...++++++. +++.
T Consensus        35 V~~~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~  109 (355)
T 2eu9_A           35 VVECLDHARGKSQVALKIIRNVGKY----REAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLG-KNTF  109 (355)
T ss_dssp             EEEEEETTTTTEEEEEEEECSCHHH----HHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEEEEEEECCC-CBHH
T ss_pred             EEEEEecCCCceEEEEEEEcccccc----hhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeEEEEEeccC-CChH
Confidence            6788886655 67888775432211    122333433333333322      22      23445568888884 4554


Q ss_pred             hhhc-c--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEE-------------------cCCCceEEeee
Q 044746           68 LLCK-K--NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL-------------------DENFFPKAADF  125 (202)
Q Consensus        68 ~~~~-~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~-------------------~~~~~~kl~df  125 (202)
                      ..+. .  ..+++.++..++.|++.||.|||+   .+|+||||||+||++                   +.++.+||+||
T Consensus       110 ~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Df  186 (355)
T 2eu9_A          110 EFLKENNFQPYPLPHVRHMAYQLCHALRFLHE---NQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADF  186 (355)
T ss_dssp             HHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCC
T ss_pred             HHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEecccccccccccccccccccCCCcEEEeec
Confidence            4443 3  359999999999999999999999   999999999999999                   56789999999


Q ss_pred             ecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       126 gl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |+++.....     .....||+.|+|||++.+..++.++||||+||+++||++|++||.....
T Consensus       187 g~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~  244 (355)
T 2eu9_A          187 GSATFDHEH-----HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHEN  244 (355)
T ss_dssp             TTCEETTSC-----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             Ccccccccc-----ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCH
Confidence            999864332     2335679999999999998999999999999999999999999986554

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.96  E-value=1.7e-29  Score=200.47  Aligned_cols=174  Identities=25%  Similarity=0.366  Sum_probs=130.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc----ccceEEEEEccCCchhhhhccC---
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE----DTETYIKGFLAMGPFYLLCKKN---   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~~~~~l~~~~~~~---   73 (202)
                      ||+++..  ++.|+.|.....     .....|..|.......+|+|++...    +...++++++++++|..++...   
T Consensus        24 V~~~~~~--~~~vavK~~~~~-----~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~   96 (307)
T 2eva_A           24 VCKAKWR--AKDVAIKQIESE-----SERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVMEYAEGGSLYNVLHGAEPL   96 (307)
T ss_dssp             EEEEEET--TEEEEEEECSST-----THHHHHHHHHHHHHHCCCTTBCCEEEBCTTTTEEEEECCTTCBHHHHHHCSSSE
T ss_pred             EEEEEEC--CeeEEEEEecCh-----hHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCcEEEEEcCCCCCHHHHHhccCCC
Confidence            5677664  344555543221     1223466777777888899887422    3356899999999999988654   


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCc-eEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF-PKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~-~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       .++...+..++.|++.||.|||+...++++||||||+||+++.++. +||+|||++......     .....||+.|+|
T Consensus        97 ~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~a  171 (307)
T 2eva_A           97 PYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH-----MTNNKGSAAWMA  171 (307)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC-----------------CCTTSSC
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc-----cccCCCCCceEC
Confidence             3789999999999999999999743358999999999999988876 799999999754322     123357999999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      ||++.+..++.++||||+|++++||++|+.||...
T Consensus       172 PE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  206 (307)
T 2eva_A          172 PEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEI  206 (307)
T ss_dssp             HHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTT
T ss_pred             hhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhh
Confidence            99999989999999999999999999999999754

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.96  E-value=4.1e-30  Score=202.85  Aligned_cols=179  Identities=17%  Similarity=0.198  Sum_probs=139.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc--c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK--K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~--~   72 (202)
                      ||++++..+++.++.|+....   .......+..|.......+|++++.      ..+...++++++++++|..++.  .
T Consensus        35 V~~~~~~~~~~~~aiK~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~  111 (302)
T 2j7t_A           35 VYKAKNKETGALAAAKVIETK---SEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELD  111 (302)
T ss_dssp             EEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEECCTTEEHHHHHHHHT
T ss_pred             EEEEEEcCCCcEEEEEEecCC---CHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEeCCCCcHHHHHHhhc
Confidence            688888888888888765432   2223345666777777788898763      3445678899999999988775  3


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.......  .......||+.|+||
T Consensus       112 ~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~~y~aP  186 (302)
T 2j7t_A          112 RGLTEPQIQVVCRQMLEALNFLHS---KRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTL--QKRDSFIGTPYWMAP  186 (302)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHH--HC-----CCGGGCCH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHHHEEECCCCCEEEEECCCCccccccc--cccccccCChhhcCC
Confidence            569999999999999999999999   999999999999999999999999999876432111  112234579999999


Q ss_pred             ccc-----CCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          153 ELW-----MPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       153 e~~-----~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |++     ....++.++|+||+|+++++|++|+.||....
T Consensus       187 E~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  226 (302)
T 2j7t_A          187 EVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELN  226 (302)
T ss_dssp             HHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred             eeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCC
Confidence            998     46678899999999999999999999997654

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.96  E-value=7.8e-30  Score=200.88  Aligned_cols=181  Identities=17%  Similarity=0.217  Sum_probs=140.6

Q ss_pred             CCccccCCCcceeehhhhchhhhh------ccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAM------EMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~   67 (202)
                      ||++++..+++.||.|+.......      .......+..|....... +|++++.      ......++++++++++|.
T Consensus        33 V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~  112 (298)
T 1phk_A           33 VRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELF  112 (298)
T ss_dssp             EEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHH
T ss_pred             EEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeeccCCeEEEEEeccCCCcHH
Confidence            688899888888888775433210      011122344454444444 5887763      344567889999999998


Q ss_pred             hhhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCC
Q 044746           68 LLCKK-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT  146 (202)
Q Consensus        68 ~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt  146 (202)
                      .++.. ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++........   .....|+
T Consensus       113 ~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~  186 (298)
T 1phk_A          113 DYLTEKVTLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEK---LREVCGT  186 (298)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCC---BCCCCSC
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEEcCCCcEEEecccchhhcCCCcc---cccccCC
Confidence            88864 469999999999999999999999   9999999999999999999999999999986543322   2335679


Q ss_pred             CcccCCcccC------CCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          147 PGCEAPELWM------PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       147 ~~y~aPe~~~------~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +.|+|||++.      ...++.++|+||+|+++++|++|+.||....
T Consensus       187 ~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~  233 (298)
T 1phk_A          187 PSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK  233 (298)
T ss_dssp             GGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             ccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCcc
Confidence            9999999884      4567899999999999999999999997544

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.96  E-value=9.3e-30  Score=203.02  Aligned_cols=180  Identities=17%  Similarity=0.152  Sum_probs=139.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhc---cCCcccCCcHHHHHHhcc--cccccc------ccccceEEEEEccC-Cchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAME---MDKPIRFTSPQRMIAADN--FSNLVG------SEDTETYIKGFLAM-GPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~i~------~~~~~~~~~~~~~~-~~l~~   68 (202)
                      ||++++..+++.||.|+........   .....++..|.......+  |++++.      ..+...+++++..+ ++|..
T Consensus        59 Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~~L~~  138 (320)
T 3a99_A           59 VYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFD  138 (320)
T ss_dssp             EEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEEEECCSSEEEHHH
T ss_pred             EEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCCcEEEEEEcCCCCccHHH
Confidence            6889888888888888754433221   123345666666666554  466653      33445577777765 78888


Q ss_pred             hhc-cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc-CCCceEEeeeecceeccccCcccccCCCCCC
Q 044746           69 LCK-KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD-ENFFPKAADFGLAKLYNREHTHITSTGRRRT  146 (202)
Q Consensus        69 ~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~-~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt  146 (202)
                      ++. ...+++..+..++.|++.||.|||+   .+++||||||+||+++ .++.+||+|||+++......    .....||
T Consensus       139 ~l~~~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~~~----~~~~~gt  211 (320)
T 3a99_A          139 FITERGALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTV----YTDFDGT  211 (320)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEECCCTTCEECCSSC----BCCCCSC
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHHHHHH---CCcEeCCCCHHHEEEeCCCCCEEEeeCcccccccccc----ccCCCCC
Confidence            775 4579999999999999999999999   9999999999999999 77999999999998765332    2334679


Q ss_pred             CcccCCcccCCCCC-CchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          147 PGCEAPELWMPYSV-TQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       147 ~~y~aPe~~~~~~~-~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +.|+|||++.+..+ +.++||||||++++||++|+.||....
T Consensus       212 ~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  253 (320)
T 3a99_A          212 RVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE  253 (320)
T ss_dssp             GGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH
T ss_pred             ccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh
Confidence            99999999876665 678999999999999999999997654

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.96  E-value=2.8e-30  Score=219.42  Aligned_cols=179  Identities=26%  Similarity=0.363  Sum_probs=141.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhcc---
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKK---   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~---   72 (202)
                      ||++++.+... ||+|+.+...    .....|..|..+....+|++++.     ......++++++++|+|.+++..   
T Consensus       283 Vy~~~~~~~~~-vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~  357 (535)
T 2h8h_A          283 VWMGTWNGTTR-VAIKTLKPGT----MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETG  357 (535)
T ss_dssp             EEEEEETTTEE-EEEEEECTTS----SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTEEHHHHHSHHHH
T ss_pred             EEEEEECCCce-EEEEEeCCCC----CCHHHHHHHHHHHHhCCCCCEeeEEEEEeeccceEeeehhcCCcHHHHHhhcCC
Confidence            67777766544 5555443221    12345777888888889998773     22445689999999999998864   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++.++..++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+++....... .......++..|+||
T Consensus       358 ~~l~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~-~~~~~~~~~~~y~aP  433 (535)
T 2h8h_A          358 KYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY-TARQGAKFPIKWTAP  433 (535)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHH-HTTCSTTSCGGGSCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCce-ecccCCcCcccccCH
Confidence            459999999999999999999999   9999999999999999999999999999986543221 112334467899999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |++....++.++||||||+++|||++ |+.||.+...
T Consensus       434 E~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~  470 (535)
T 2h8h_A          434 EAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN  470 (535)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCH
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            99988889999999999999999999 9999976543

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.96  E-value=1.9e-29  Score=202.88  Aligned_cols=180  Identities=19%  Similarity=0.238  Sum_probs=141.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCc--------------ccCCcHHHHHHhcccccccc------ccccceEEEEE
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKP--------------IRFTSPQRMIAADNFSNLVG------SEDTETYIKGF   60 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~   60 (202)
                      ||++++  +++.||.|+............              ..+..|.......+|++++.      ..+...+++++
T Consensus        47 V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~  124 (348)
T 2pml_X           47 IILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGIITNYDEVYIIYEY  124 (348)
T ss_dssp             EEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCSEEEESSSEEEEEEEC
T ss_pred             EEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEec
Confidence            577777  566666665443322221111              45667777778888998763      33456688999


Q ss_pred             ccCCchhhh------hc---cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceec
Q 044746           61 LAMGPFYLL------CK---KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY  131 (202)
Q Consensus        61 ~~~~~l~~~------~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~  131 (202)
                      +++++|..+      +.   ...+++..+..++.|++.||.|||+  ..+++|+||||+||+++.++.++|+|||++...
T Consensus       125 ~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~--~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~  202 (348)
T 2pml_X          125 MENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHN--EKNICHRDVKPSNILMDKNGRVKLSDFGESEYM  202 (348)
T ss_dssp             CTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHH--TSCEECCCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred             cCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhc--cCCEeecCCChHhEEEcCCCcEEEecccccccc
Confidence            999999887      54   3569999999999999999999996  279999999999999999999999999999865


Q ss_pred             cccCcccccCCCCCCCcccCCcccCCC-CCCc-hhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          132 NREHTHITSTGRRRTPGCEAPELWMPY-SVTQ-KCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       132 ~~~~~~~~~~~~~gt~~y~aPe~~~~~-~~~~-~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ...    ......|++.|+|||.+.+. .++. ++|+||+|++++||++|+.||.....
T Consensus       203 ~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  257 (348)
T 2pml_X          203 VDK----KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKIS  257 (348)
T ss_dssp             BTT----EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSC
T ss_pred             ccc----cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCc
Confidence            433    22345679999999999877 6666 99999999999999999999986554

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.96  E-value=5.7e-30  Score=200.83  Aligned_cols=173  Identities=17%  Similarity=0.188  Sum_probs=134.5

Q ss_pred             CCccccCCCcc-------eeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchh
Q 044746            1 MEKPRNRGSTR-------FITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~~~~~~~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~   67 (202)
                      ||++++...++       .|+.|+.....   ......+..|.......+|++++.      ..+...++++++++++|.
T Consensus        24 V~~~~~~~~~~~~~~~~~~va~K~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~  100 (289)
T 4fvq_A           24 IFKGVRREVGDYGQLHETEVLLKVLDKAH---RNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLD  100 (289)
T ss_dssp             EEEEEEEEECGGGCEEEEEEEEEEECGGG---GGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCCEEEEECCTTCBHH
T ss_pred             EEEEEEecccccccccchhhhhhhccccc---HHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCCEEEEECCCCCCHH
Confidence            57777766553       45555543221   222345667777788888998773      344567899999999999


Q ss_pred             hhhccCC--CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCc--------eEEeeeecceeccccCcc
Q 044746           68 LLCKKNI--LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF--------PKAADFGLAKLYNREHTH  137 (202)
Q Consensus        68 ~~~~~~~--~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~--------~kl~dfgl~~~~~~~~~~  137 (202)
                      .++....  +++..+..++.|++.||.|||+   ++++||||||+||+++.++.        ++|+|||++.......  
T Consensus       101 ~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~--  175 (289)
T 4fvq_A          101 TYLKKNKNCINILWKLEVAKQLAAAMHFLEE---NTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKD--  175 (289)
T ss_dssp             HHHHHTGGGCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSCHH--
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHHHHHHhh---CCeECCCcCcceEEEecCCcccccccceeeeccCcccccccCcc--
Confidence            9886554  9999999999999999999999   99999999999999988876        9999999986543221  


Q ss_pred             cccCCCCCCCcccCCcccCC-CCCCchhhHHHHHHHHHHHHcC-CCCCcc
Q 044746          138 ITSTGRRRTPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGR-RRNLEK  185 (202)
Q Consensus       138 ~~~~~~~gt~~y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g-~~p~~~  185 (202)
                          ...||+.|+|||++.+ ..++.++||||+|++++||++| .+||..
T Consensus       176 ----~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~  221 (289)
T 4fvq_A          176 ----ILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSA  221 (289)
T ss_dssp             ----HHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred             ----ccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccc
Confidence                1235788999999987 6789999999999999999995 455543

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.96  E-value=6e-30  Score=204.45  Aligned_cols=180  Identities=18%  Similarity=0.263  Sum_probs=141.8

Q ss_pred             CCccc----cCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhh
Q 044746            1 MEKPR----NRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~   68 (202)
                      ||+++    +...++.||.|+....   ..+....+..|.......+|++++..        .....++++++++++|..
T Consensus        57 V~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~  133 (326)
T 2w1i_A           57 VEMCRYDPLQDNTGEVVAVKKLQHS---TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRD  133 (326)
T ss_dssp             EEEEEECTTSSSCCEEEEEEEESSC---CSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCEEEECCCTTCBHHH
T ss_pred             EEEEEeccccCCCceEEEEEEeccC---CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceEEEEECCCCCCHHH
Confidence            46665    5666777777764332   12223456777777888888987642        224568899999999999


Q ss_pred             hhccC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc-ccCCCCC
Q 044746           69 LCKKN--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-TSTGRRR  145 (202)
Q Consensus        69 ~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~g  145 (202)
                      ++...  .+++.++..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.......... ......+
T Consensus       134 ~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~  210 (326)
T 2w1i_A          134 YLQKHKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGES  210 (326)
T ss_dssp             HHHHSTTSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSC
T ss_pred             HHHhcccCCCHHHHHHHHHHHHHHHHHHHh---CCEeccCCCcceEEEcCCCcEEEecCcchhhccccccccccccCCCC
Confidence            88654  49999999999999999999999   999999999999999999999999999998765433221 1233456


Q ss_pred             CCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          146 TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       146 t~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      +..|+|||.+.+..++.++||||+|++++||++|..||...
T Consensus       211 ~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~  251 (326)
T 2w1i_A          211 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSP  251 (326)
T ss_dssp             CGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSH
T ss_pred             ceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCC
Confidence            78899999998888899999999999999999999998743

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.96  E-value=3.6e-30  Score=199.85  Aligned_cols=175  Identities=21%  Similarity=0.298  Sum_probs=133.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc--------ccccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG--------SEDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++++.  +..+|.|+.+.... .......+..|.......+|+|++.        ......++++++++++|..++..
T Consensus        26 V~~~~~~--~~~~avK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~  102 (271)
T 3kmu_A           26 LWKGRWQ--GNDIVVKVLKVRDW-STRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHE  102 (271)
T ss_dssp             EEEEEET--TEEEEEEEECCTTC-CHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEECCTTCBHHHHHHS
T ss_pred             EEEEEEC--CeeEEEEEeccccc-CHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeecccCCCcHHHHHhh
Confidence            5777775  44455555432211 1112234556666666778888763        12455799999999999999876


Q ss_pred             CC---CCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCC
Q 044746           73 NI---LGFGQLREIEVSTSKGIAYLHEECRQK--IVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTP  147 (202)
Q Consensus        73 ~~---~~~~~~~~~~~~i~~~l~~lH~~~~~~--iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~  147 (202)
                      ..   +++.++..++.|++.||.|||+   .+  ++||||||+||+++.++.++++|||++....       .....||+
T Consensus       103 ~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~-------~~~~~~t~  172 (271)
T 3kmu_A          103 GTNFVVDQSQAVKFALDMARGMAFLHT---LEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ-------SPGRMYAP  172 (271)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHHHHHTT---SSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS-------CTTCBSCG
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHhc---CCCceecCCCccceEEEcCCcceeEEeccceeeec-------ccCccCCc
Confidence            53   8999999999999999999998   78  9999999999999999999999988765322       23345799


Q ss_pred             cccCCcccCCCCCCc---hhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          148 GCEAPELWMPYSVTQ---KCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       148 ~y~aPe~~~~~~~~~---~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .|+|||.+.+..++.   ++||||+|++++||++|+.||.....
T Consensus       173 ~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~  216 (271)
T 3kmu_A          173 AWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSN  216 (271)
T ss_dssp             GGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCH
T ss_pred             cccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccCh
Confidence            999999998755444   79999999999999999999976544

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.96  E-value=2.7e-29  Score=199.23  Aligned_cols=180  Identities=18%  Similarity=0.198  Sum_probs=138.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhc---cCCcccCCcHHHHHHhc----ccccccc------ccccceEEEEE-ccCCch
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAME---MDKPIRFTSPQRMIAAD----NFSNLVG------SEDTETYIKGF-LAMGPF   66 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~i~------~~~~~~~~~~~-~~~~~l   66 (202)
                      ||++++..+++.||.|+........   ......+..|.......    +|++++.      ..+...+++++ +.+++|
T Consensus        47 Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~~L  126 (312)
T 2iwi_A           47 VFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEGFMLVLERPLPAQDL  126 (312)
T ss_dssp             EEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-----CEEEEECCSSEEEH
T ss_pred             EEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEecCCeEEEEEEecCCCCCH
Confidence            6889888888888887754432211   12334566666666555    7887763      23344577777 688899


Q ss_pred             hhhhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc-CCCceEEeeeecceeccccCcccccCCCC
Q 044746           67 YLLCKK-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD-ENFFPKAADFGLAKLYNREHTHITSTGRR  144 (202)
Q Consensus        67 ~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~-~~~~~kl~dfgl~~~~~~~~~~~~~~~~~  144 (202)
                      ..++.. ..+++..+..++.|++.||.|||+   .+++||||||+||+++ .++.++|+|||++.......    .....
T Consensus       127 ~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~~~----~~~~~  199 (312)
T 2iwi_A          127 FDYITEKGPLGEGPSRCFFGQVVAAIQHCHS---RGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEP----YTDFD  199 (312)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH---HTEECCCCSGGGEEEETTTTEEEECCCSSCEECCSSC----BCCCC
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChhhEEEeCCCCeEEEEEcchhhhcccCc----ccccC
Confidence            888754 469999999999999999999999   9999999999999999 78999999999998765432    23345


Q ss_pred             CCCcccCCcccCCCCCC-chhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          145 RTPGCEAPELWMPYSVT-QKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       145 gt~~y~aPe~~~~~~~~-~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |++.|+|||++.+..+. .++||||+|++++||++|+.||....
T Consensus       200 ~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  243 (312)
T 2iwi_A          200 GTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ  243 (312)
T ss_dssp             SCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH
T ss_pred             CcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH
Confidence            79999999998766654 58999999999999999999997654

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.96  E-value=6.6e-29  Score=214.17  Aligned_cols=178  Identities=23%  Similarity=0.260  Sum_probs=145.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc------------cccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS------------EDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------------~~~~~~~~~~~~~~~l~~   68 (202)
                      ||++++..+++.||.|+.+...  ......++..|..+....+|+|++..            ++...++++++++++|..
T Consensus        30 Vyla~~~~tg~~VAVKvi~~~~--~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~~LVmEy~~ggsL~~  107 (676)
T 3qa8_A           30 VLRWIHQDTGEQVAIKQCRQEL--SPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRK  107 (676)
T ss_dssp             CCCCCCTTTTCCEEECCCCSCC--CHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSCCCEEECCSSCBHHH
T ss_pred             EEEEEECCCCcEEEEEEecccC--CHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeEEEEEEeCCCCCHHH
Confidence            7999998888888888754321  11223446677778888899987632            455679999999999999


Q ss_pred             hhccC----CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCc---eEEeeeecceeccccCcccccC
Q 044746           69 LCKKN----ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF---PKAADFGLAKLYNREHTHITST  141 (202)
Q Consensus        69 ~~~~~----~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~---~kl~dfgl~~~~~~~~~~~~~~  141 (202)
                      ++...    .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.   ++|+|||++........   ..
T Consensus       108 ~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs---~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~~~---~~  181 (676)
T 3qa8_A          108 YLNQFENCCGLKEGPIRTLLSDISSALRYLHE---NRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGEL---CT  181 (676)
T ss_dssp             HHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHH---TTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSCCC---CC
T ss_pred             HHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEeecCCCceeEEEcccccccccccccc---cc
Confidence            88653    48999999999999999999999   99999999999999986654   89999999986544322   23


Q ss_pred             CCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       142 ~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      ...||+.|+|||.+.+..++.++|+||+|++++++++|+.||...
T Consensus       182 ~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~  226 (676)
T 3qa8_A          182 EFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPN  226 (676)
T ss_dssp             CCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             cccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcc
Confidence            456799999999999999999999999999999999999999653

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.96  E-value=9.1e-30  Score=204.20  Aligned_cols=124  Identities=13%  Similarity=0.071  Sum_probs=108.4

Q ss_pred             cccceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHH-hCCCCCeEEecCCCCcEEEcCCC-----------
Q 044746           51 EDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLH-EECRQKIVHYDIKPESVLLDENF-----------  118 (202)
Q Consensus        51 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH-~~~~~~iiHrdlk~~nil~~~~~-----------  118 (202)
                      .+..+++++++++|++...+....+++..++.++.|++.||.||| +   ++|+||||||+|||++.++           
T Consensus       134 ~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~~ivHrDlKp~NILl~~~~~~~~~~~~~~~  210 (336)
T 2vuw_A          134 DDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEAS---LRFEHRDLHWGNVLLKKTSLKKLHYTLNGK  210 (336)
T ss_dssp             TTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHHHHHHHHHHHH---HCCBCSCCCGGGEEEEECSCSEEEEEETTE
T ss_pred             cCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh---CCEeECCCCHHHEEEeccCCcceeeeccCc
Confidence            567789999999998777776678999999999999999999999 8   9999999999999999887           


Q ss_pred             ---------ceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHH-HHHHHcCCCCCcc
Q 044746          119 ---------FPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGML-LFEVVGRRRNLEK  185 (202)
Q Consensus       119 ---------~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~-l~el~~g~~p~~~  185 (202)
                               .+||+|||+++.....       ...||+.|+|||++.+.. +.++||||++++ .+++++|..||..
T Consensus       211 ~~~~~~~~~~vkL~DFG~a~~~~~~-------~~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~  279 (336)
T 2vuw_A          211 SSTIPSCGLQVSIIDYTLSRLERDG-------IVVFCDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSN  279 (336)
T ss_dssp             EEEEECTTEEEEECCCTTCBEEETT-------EEECCCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHH
T ss_pred             cccccCCCceEEEeeccccEecCCC-------cEEEeecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcc
Confidence                     8999999999865432       236799999999998766 899999998766 7778899999975

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.96  E-value=1.4e-29  Score=205.28  Aligned_cols=174  Identities=20%  Similarity=0.242  Sum_probs=127.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-----------cccccc---ccc-------ccceEEEE
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-----------NFSNLV---GSE-------DTETYIKG   59 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~i---~~~-------~~~~~~~~   59 (202)
                      ||++++..+++.||.|+........    ..+..|.......           .|++++   +..       ....++++
T Consensus        35 V~~~~~~~~~~~vaiK~~~~~~~~~----~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~lv~e  110 (373)
T 1q8y_A           35 VWLAKDMVNNTHVAMKIVRGDKVYT----EAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFE  110 (373)
T ss_dssp             EEEEEETTTTEEEEEEEECSCHHHH----HHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEEC
T ss_pred             EEEEEecCCCcEEEEEEecCCccch----hhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCCceEEEEEe
Confidence            6889988888888888754322111    1122232222222           244444   221       13345555


Q ss_pred             EccCCchhhhhcc---CCCCHHHHHHHHHHHHHHHHHHHhCCCC-CeEEecCCCCcEEEc------CCCceEEeeeecce
Q 044746           60 FLAMGPFYLLCKK---NILGFGQLREIEVSTSKGIAYLHEECRQ-KIVHYDIKPESVLLD------ENFFPKAADFGLAK  129 (202)
Q Consensus        60 ~~~~~~l~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~~~-~iiHrdlk~~nil~~------~~~~~kl~dfgl~~  129 (202)
                      ++ +++|..++..   ..+++..+..++.|++.||.|||+   + +|+||||||+||+++      ..+.+||+|||++.
T Consensus       111 ~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~---~~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~  186 (373)
T 1q8y_A          111 VL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHR---RCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNAC  186 (373)
T ss_dssp             CC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH---TTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCE
T ss_pred             cC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHh---cCCEEecCCChHHeEEeccCCCcCcceEEEccccccc
Confidence            66 7888887754   459999999999999999999999   8 999999999999994      34589999999998


Q ss_pred             eccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          130 LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       130 ~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      .....     .....||+.|+|||++.+..++.++||||+||++|||++|+.||....
T Consensus       187 ~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  239 (373)
T 1q8y_A          187 WYDEH-----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDE  239 (373)
T ss_dssp             ETTBC-----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC----
T ss_pred             ccCCC-----CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCc
Confidence            65432     233467999999999999899999999999999999999999998654

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.96  E-value=1.2e-29  Score=220.07  Aligned_cols=182  Identities=18%  Similarity=0.216  Sum_probs=138.2

Q ss_pred             CCccccCCC---cceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGS---TRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++++...   ...|+.|..+...  .......|..|.......+|+|++.     ..+..+++++++++|+|..++..
T Consensus       406 Vy~a~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~lv~E~~~~g~L~~~l~~  483 (656)
T 2j0j_A          406 VHQGIYMSPENPAMAVAIKTCKNCT--SDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQV  483 (656)
T ss_dssp             EEEEEECCSSSCCEEEEEEECSSTT--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHHHHHH
T ss_pred             EEEEEEecCCCccEEEEEEEecccC--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCceEEEEEcCCCCcHHHHHHh
Confidence            567766433   3445555433221  1112245667777788889998763     33445789999999999998864


Q ss_pred             C--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           73 N--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        73 ~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      .  .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+++........ ......+|+.|+
T Consensus       484 ~~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~~-~~~~~~~t~~y~  559 (656)
T 2j0j_A          484 RKFSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-KASKGKLPIKWM  559 (656)
T ss_dssp             TTTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC-----------CCGGGC
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccchHhEEEeCCCCEEEEecCCCeecCCCcce-eccCCCCCccee
Confidence            4  58999999999999999999999   99999999999999999999999999999865433221 122344578999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |||++.+..++.++||||+|+++|||++ |.+||.+...
T Consensus       560 aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~  598 (656)
T 2j0j_A          560 APESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN  598 (656)
T ss_dssp             CHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH
T ss_pred             CHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCH
Confidence            9999988899999999999999999997 9999976543

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.96  E-value=3.3e-29  Score=199.05  Aligned_cols=180  Identities=21%  Similarity=0.263  Sum_probs=132.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||++++.+  . ++.|+.+.. .........+..|.......+|++++.      ..+...++++++++++|..++... 
T Consensus        49 V~~~~~~~--~-~avk~~~~~-~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~  124 (319)
T 2y4i_B           49 VYHGRWHG--E-VAIRLIDIE-RDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAK  124 (319)
T ss_dssp             EEEEEESS--S-EEEEECCCC-SCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECBCCCSEEHHHHTTSSC
T ss_pred             EEEEEEcC--e-EEEEEeecC-CCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEeecccCCcHHHHHHhcC
Confidence            46666543  2 444433222 122334456777777788888898763      334456888999999999998765 


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccC---cccccCCCCCCCcc
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREH---THITSTGRRRTPGC  149 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~---~~~~~~~~~gt~~y  149 (202)
                       .+++..+..++.|++.||.|||+   .+++||||||+||+++ ++.++|+|||++.......   .........|++.|
T Consensus       125 ~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y  200 (319)
T 2y4i_B          125 IVLDVNKTRQIAQEIVKGMGYLHA---KGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCH  200 (319)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHH---TTCCCCCCCSTTEEEC---CCEECCCSCCC----------CCSCBCCSGGGGT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCChhhEEEe-CCCEEEeecCCccccccccccccccccccCCCcccc
Confidence             49999999999999999999999   9999999999999998 6799999999987543211   11122334578999


Q ss_pred             cCCcccCC---------CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          150 EAPELWMP---------YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       150 ~aPe~~~~---------~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +|||.+..         ..++.++||||+|++++||++|+.||.....
T Consensus       201 ~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~  248 (319)
T 2y4i_B          201 LAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPA  248 (319)
T ss_dssp             SCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCH
T ss_pred             cChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            99999874         3578999999999999999999999986543

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.96  E-value=1.2e-29  Score=198.16  Aligned_cols=173  Identities=23%  Similarity=0.291  Sum_probs=129.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-------ccccceEEEEEccCCchhhhhccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-------SEDTETYIKGFLAMGPFYLLCKKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-------~~~~~~~~~~~~~~~~l~~~~~~~   73 (202)
                      ||++++.  +..|+.|+.+..     .....+..|.......+|++++.       ..+...++++++++++|..++...
T Consensus        37 V~~~~~~--~~~vavK~~~~~-----~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  109 (278)
T 1byg_A           37 VMLGDYR--GNKVAVKCIKND-----ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSR  109 (278)
T ss_dssp             EEEEEET--TEEEEEEECCCC-----C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHH
T ss_pred             EEEEEEc--CCEEEEEEecch-----hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecCCCCCHHHHHHhc
Confidence            5666654  445555554321     12334666777777778887753       223457889999999999888654


Q ss_pred             C---CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 I---LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 ~---~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      .   +++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.......     ....+++.|+
T Consensus       110 ~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~-----~~~~~~~~y~  181 (278)
T 1byg_A          110 GRSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-----DTGKLPVKWT  181 (278)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC-----------------CCTTTS
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHh---CCccccCCCcceEEEeCCCcEEEeeccccccccccc-----cCCCcccccc
Confidence            2   8999999999999999999999   999999999999999999999999999987543321     1234588999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |||.+.+..++.++|+||+|+++++|++ |+.||.....
T Consensus       182 aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~  220 (278)
T 1byg_A          182 APEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL  220 (278)
T ss_dssp             CHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCG
T ss_pred             CHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            9999988889999999999999999998 9999976543

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.95  E-value=1.8e-29  Score=201.53  Aligned_cols=178  Identities=22%  Similarity=0.251  Sum_probs=117.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcH-HHHHHhcccccccc------ccccceEEEEEccCCchhhhhc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSP-QRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK--   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~--   71 (202)
                      ||++++..+++.||.|+.+.....  ....++..+ .......+|++++.      ..+...++++++.+ +|..+..  
T Consensus        38 Vy~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~  114 (327)
T 3aln_A           38 VNKMVHKPSGQIMAVKRIRSTVDE--KEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMST-SFDKFYKYV  114 (327)
T ss_dssp             EEEEEETTTTEEEEEEEEECCCCH--HHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEECCCSE-EHHHHHHHH
T ss_pred             EEEEEEcCCCCEEEEEEeecccCc--hHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEeecCC-ChHHHHHHH
Confidence            688888888888888765432111  111122223 33555667887763      23445577777775 6655553  


Q ss_pred             ----cCCCCHHHHHHHHHHHHHHHHHHHhCCCC-CeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCC
Q 044746           72 ----KNILGFGQLREIEVSTSKGIAYLHEECRQ-KIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT  146 (202)
Q Consensus        72 ----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~-~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt  146 (202)
                          ...+++..+..++.|++.||.|||+   . +++||||||+||+++.++.+||+|||+++.......   .....||
T Consensus       115 ~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~---~~~~~gt  188 (327)
T 3aln_A          115 YSVLDDVIPEEILGKITLATVKALNHLKE---NLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIA---KTRDAGC  188 (327)
T ss_dssp             HHTTCCCCCHHHHHHHHHHHHHHHHHHHH---HHSCCCSCCCGGGEEEETTTEEEECCCSSSCC----------------
T ss_pred             HhhhcccCcHHHHHHHHHHHHHHHHHHhc---cCCEeECCCCHHHEEEcCCCCEEEccCCCceecccccc---cccCCCC
Confidence                5679999999999999999999999   8 999999999999999999999999999976543322   2233579


Q ss_pred             CcccCCccc----CCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          147 PGCEAPELW----MPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       147 ~~y~aPe~~----~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +.|+|||++    .+..++.++||||+|+++++|++|+.||....
T Consensus       189 ~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  233 (327)
T 3aln_A          189 RPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWN  233 (327)
T ss_dssp             -----------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-
T ss_pred             ccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcc
Confidence            999999998    45678999999999999999999999997643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.95  E-value=2e-29  Score=219.57  Aligned_cols=173  Identities=17%  Similarity=0.160  Sum_probs=134.2

Q ss_pred             CCccccCC-CcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc------cc-----ceEEEEEccCCchhh
Q 044746            1 MEKPRNRG-STRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE------DT-----ETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~-----~~~~~~~~~~~~l~~   68 (202)
                      ||++++.. +++.|+.|+.....  ..+....+..|.......+|+|++...      +.     .+++++++++++|..
T Consensus        96 Vy~a~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~~lv~E~~~g~~L~~  173 (681)
T 2pzi_A           96 IYLALDRNVNGRPVVLKGLVHSG--DAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKR  173 (681)
T ss_dssp             EEEEEEGGGTTEEEEEEESCSSC--CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEEEEEEECCCCEECC-
T ss_pred             EEEEEEcCCCCcEEEEEEeCccC--CHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCceeEEEEEeCCCCcHHH
Confidence            68888865 56777777543221  111223456677777778899876321      11     478999999999988


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      +... .+++.++..++.|++.||.|||+   ++|+||||||+||+++.+ .+||+|||+++.....      ....||+.
T Consensus       174 ~~~~-~l~~~~~~~~~~qi~~aL~~lH~---~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~------~~~~gt~~  242 (681)
T 2pzi_A          174 SKGQ-KLPVAEAIAYLLEILPALSYLHS---IGLVYNDLKPENIMLTEE-QLKLIDLGAVSRINSF------GYLYGTPG  242 (681)
T ss_dssp             ---C-CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECSS-CEEECCCTTCEETTCC------SCCCCCTT
T ss_pred             HHhC-CCCHHHHHHHHHHHHHHHHHHHH---CCCeecccChHHeEEeCC-cEEEEecccchhcccC------CccCCCcc
Confidence            7765 89999999999999999999999   999999999999999875 8999999999865432      33567999


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |+|||++.+.. +.++|||||||++++|++|.+||....
T Consensus       243 y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~  280 (681)
T 2pzi_A          243 FQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRY  280 (681)
T ss_dssp             TSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEE
T ss_pred             ccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCcccc
Confidence            99999987654 889999999999999999999987643

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.95  E-value=3.4e-29  Score=198.86  Aligned_cols=179  Identities=15%  Similarity=0.178  Sum_probs=124.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcc--cccccc------ccccceEEEEEccCCchhhhhcc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADN--FSNLVG------SEDTETYIKGFLAMGPFYLLCKK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~   72 (202)
                      ||++++.. ++.||.|+...... .......+..|........  +++++.      ......++++ ..+++|..++..
T Consensus        44 Vy~~~~~~-~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e-~~~~~L~~~l~~  120 (313)
T 3cek_A           44 VFQVLNEK-KQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKK  120 (313)
T ss_dssp             EEEEECTT-CCEEEEEEEECSSC-CHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEEEC-CCSEEHHHHHHH
T ss_pred             EEEEEcCC-CcEEEEEEeccccc-cccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEEEe-cCCCcHHHHHHh
Confidence            67888865 55566555322111 1112234555555554443  366553      2333445565 677888888754


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       ..+++.++..++.|++.||.|||+   .+++||||||+||+++. +.+||+|||++................|++.|+|
T Consensus       121 ~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~a  196 (313)
T 3cek_A          121 KKSIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMP  196 (313)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEET-TEEEECCCSSSCC--------------CCGGGCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcccEEEEC-CeEEEeeccccccccCccccccccCCCCCCCcCC
Confidence             569999999999999999999999   99999999999999964 8999999999986644333222334567999999


Q ss_pred             CcccCC-----------CCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          152 PELWMP-----------YSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       152 Pe~~~~-----------~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      ||.+.+           ..++.++||||+|++++||++|+.||...
T Consensus       197 PE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  242 (313)
T 3cek_A          197 PEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI  242 (313)
T ss_dssp             HHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             HHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhH
Confidence            999875           46888999999999999999999999754

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.95  E-value=8.9e-29  Score=194.72  Aligned_cols=171  Identities=24%  Similarity=0.289  Sum_probs=131.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc-------------------cccceEEEEEc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS-------------------EDTETYIKGFL   61 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~~~   61 (202)
                      ||++++..+++.|+.|+.+....    ....+..|.......+|++++..                   .+...++++++
T Consensus        22 V~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~   97 (303)
T 1zy4_A           22 VVKARNALDSRYYAIKKIRHTEE----KLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYC   97 (303)
T ss_dssp             EEEEEETTTCCEEEEEEEEEEHH----HHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC------CEEEEEEEEECC
T ss_pred             EEEEEEcCCCeEEEEEEEeccHH----HHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcccccCCceEEEEecC
Confidence            68888888888888876543221    22346667777777888987642                   34456889999


Q ss_pred             cCCchhhhhccC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc---
Q 044746           62 AMGPFYLLCKKN--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT---  136 (202)
Q Consensus        62 ~~~~l~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~---  136 (202)
                      ++++|..++...  .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++........   
T Consensus        98 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~  174 (303)
T 1zy4_A           98 ENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHS---QGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILK  174 (303)
T ss_dssp             CSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCCCCCSCTTC------
T ss_pred             CCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHh---CCeecccCCHHhEEEcCCCCEEEeeCcchhhcccccchhc
Confidence            999999988643  47889999999999999999999   9999999999999999999999999999986542210   


Q ss_pred             ---------ccccCCCCCCCcccCCcccCCC-CCCchhhHHHHHHHHHHHHc
Q 044746          137 ---------HITSTGRRRTPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVG  178 (202)
Q Consensus       137 ---------~~~~~~~~gt~~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~  178 (202)
                               ........||+.|+|||++.+. .++.++|+||+|+++|||++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~  226 (303)
T 1zy4_A          175 LDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY  226 (303)
T ss_dssp             -------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS
T ss_pred             cccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh
Confidence                     1112334679999999999864 68999999999999999998

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.95  E-value=4.6e-29  Score=195.83  Aligned_cols=179  Identities=21%  Similarity=0.306  Sum_probs=140.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh-ccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC-KKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~-~~~   73 (202)
                      ||++++..+++.|+.|+...... .......+..|.......+|++++.      ..+...++++++++++|...+ ...
T Consensus        38 V~~~~~~~~~~~valK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  116 (287)
T 2wei_A           38 VLKCKDRITQQEYAVKVINKASA-KNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRK  116 (287)
T ss_dssp             EEEEEETTTCCEEEEEEEEGGGB-SSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHS
T ss_pred             EEEEEEcCCCcEEEEEEeccccc-chHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEEEccCCCCHHHHHHhcC
Confidence            68888888888888877543322 1223345666777777788888763      334456788889999987766 445


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCC---CceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN---FFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~---~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      .+++.++..++.|++.||.|||+   .+++|+||||+||+++.+   +.++|+|||++........   .....|++.|+
T Consensus       117 ~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~---~~~~~~~~~y~  190 (287)
T 2wei_A          117 RFSEHDAARIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK---MKDRIGTAYYI  190 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSS---CSCHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCChhhEEEecCCCcccEEEeccCcceeecCCCc---cccccCccccc
Confidence            79999999999999999999999   999999999999999754   4799999999876543221   12234688999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      |||.+.+ .++.++|+||+|+++++|++|+.||....
T Consensus       191 aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~  226 (287)
T 2wei_A          191 APEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKN  226 (287)
T ss_dssp             CHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             ChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCC
Confidence            9999876 48899999999999999999999997654

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.95  E-value=9.8e-29  Score=196.13  Aligned_cols=177  Identities=20%  Similarity=0.220  Sum_probs=125.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc--c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK--K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~--~   72 (202)
                      ||++++..+++.||.|+........ .....+..+.......+|++++.      ..+...++++++ ++.+..+..  .
T Consensus        41 V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~~~~l~~~~~  118 (318)
T 2dyl_A           41 VWKMRFRKTGHVIAVKQMRRSGNKE-ENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELM-GTCAEKLKKRMQ  118 (318)
T ss_dssp             EEEEEETTTCCEEEEEEEETTSCHH-HHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC-SEEHHHHHHHHT
T ss_pred             EEEEEEecCCeEEEEEEecccccch-HHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEEecc-CCcHHHHHHHhc
Confidence            6888888888888887654332111 11122333444556667887763      334445777777 444444443  4


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCC-CeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQ-KIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~-~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                      ..+++..+..++.|++.||.|||+   . +++|+||||+||+++.++.++|+|||++........   .....||+.|+|
T Consensus       119 ~~~~~~~~~~~~~~i~~~l~~lH~---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~a  192 (318)
T 2dyl_A          119 GPIPERILGKMTVAIVKALYYLKE---KHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKA---KDRSAGCAAYMA  192 (318)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCGGGEEECTTSCEEECCCTTC-----------------CCTTCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHh---hCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCcc---ccccCCCccccC
Confidence            679999999999999999999998   6 999999999999999999999999999976543222   223457999999


Q ss_pred             CcccC-----CCCCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          152 PELWM-----PYSVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       152 Pe~~~-----~~~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      ||.+.     ...++.++||||+|++++||++|+.||..
T Consensus       193 PE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  231 (318)
T 2dyl_A          193 PERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKN  231 (318)
T ss_dssp             HHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             hhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCC
Confidence            99984     45688999999999999999999999976

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.95  E-value=7.9e-28  Score=199.46  Aligned_cols=151  Identities=21%  Similarity=0.272  Sum_probs=112.1

Q ss_pred             CCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhccCC--CCHHHHHHHHHHHHHHHHHHHhCCCCCe
Q 044746           32 FTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI--LGFGQLREIEVSTSKGIAYLHEECRQKI  102 (202)
Q Consensus        32 ~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~i~~~l~~lH~~~~~~i  102 (202)
                      +..|..+.... +|+|++.      ......++++++. ++|..++....  .+...+..++.|++.||.|||+   .+|
T Consensus        64 ~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~-g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~i  139 (432)
T 3p23_A           64 ADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHS---LNI  139 (432)
T ss_dssp             CHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHH---TTC
T ss_pred             HHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC-CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHH---CcC
Confidence            44565556555 7998874      3344567777776 68888876553  5555678999999999999999   999


Q ss_pred             EEecCCCCcEEEcC-----CCceEEeeeecceeccccCc-ccccCCCCCCCcccCCcccC---CCCCCchhhHHHHHHHH
Q 044746          103 VHYDIKPESVLLDE-----NFFPKAADFGLAKLYNREHT-HITSTGRRRTPGCEAPELWM---PYSVTQKCDVFSFGMLL  173 (202)
Q Consensus       103 iHrdlk~~nil~~~-----~~~~kl~dfgl~~~~~~~~~-~~~~~~~~gt~~y~aPe~~~---~~~~~~~~Diws~G~~l  173 (202)
                      +||||||+||+++.     ...++|+|||+++....... ........||+.|+|||++.   ...++.++||||+||++
T Consensus       140 vHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il  219 (432)
T 3p23_A          140 VHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVF  219 (432)
T ss_dssp             CCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHH
T ss_pred             EeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHH
Confidence            99999999999943     34578999999986643321 12234466899999999997   45678899999999999


Q ss_pred             HHHHc-CCCCCcch
Q 044746          174 FEVVG-RRRNLEKE  186 (202)
Q Consensus       174 ~el~~-g~~p~~~~  186 (202)
                      +||++ |..||...
T Consensus       220 ~ellt~g~~pf~~~  233 (432)
T 3p23_A          220 YYVISEGSHPFGKS  233 (432)
T ss_dssp             HHHHTTSCBTTBST
T ss_pred             HHHHcCCCCCcchh
Confidence            99999 99999654

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.95  E-value=5.5e-28  Score=200.44  Aligned_cols=151  Identities=20%  Similarity=0.324  Sum_probs=109.6

Q ss_pred             CcHHHHHH-hcccccccc------ccccceEEEEEccCCchhhhhccCCCC--------HHHHHHHHHHHHHHHHHHHhC
Q 044746           33 TSPQRMIA-ADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNILG--------FGQLREIEVSTSKGIAYLHEE   97 (202)
Q Consensus        33 ~~~~~~~~-~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~i~~~l~~lH~~   97 (202)
                      ..|..... ..+|+|++.      ......++++++. |+|..++......        +..+..++.|++.||.|||+ 
T Consensus        56 ~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~-  133 (434)
T 2rio_A           56 LMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHS-  133 (434)
T ss_dssp             HHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHH-
Confidence            34444444 348898874      3344567788875 6998888655422        22356799999999999999 


Q ss_pred             CCCCeEEecCCCCcEEEcCC-------------CceEEeeeecceeccccCccc--ccCCCCCCCcccCCcccCC-----
Q 044746           98 CRQKIVHYDIKPESVLLDEN-------------FFPKAADFGLAKLYNREHTHI--TSTGRRRTPGCEAPELWMP-----  157 (202)
Q Consensus        98 ~~~~iiHrdlk~~nil~~~~-------------~~~kl~dfgl~~~~~~~~~~~--~~~~~~gt~~y~aPe~~~~-----  157 (202)
                        .+|+||||||+||+++.+             +.+||+|||+++.........  ......||+.|+|||++.+     
T Consensus       134 --~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  211 (434)
T 2rio_A          134 --LKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQ  211 (434)
T ss_dssp             --TTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTS
T ss_pred             --CCccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccc
Confidence              999999999999999754             489999999998765432211  1234568999999999975     


Q ss_pred             --CCCCchhhHHHHHHHHHHHHc-CCCCCcchh
Q 044746          158 --YSVTQKCDVFSFGMLLFEVVG-RRRNLEKEI  187 (202)
Q Consensus       158 --~~~~~~~Diws~G~~l~el~~-g~~p~~~~~  187 (202)
                        ..++.++||||+||+++||++ |+.||....
T Consensus       212 ~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~  244 (434)
T 2rio_A          212 TKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKY  244 (434)
T ss_dssp             CCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTT
T ss_pred             cccCcchhhhhHhHHHHHHHHHhCCCCCCCCch
Confidence              568999999999999999999 999997543

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.94  E-value=1.7e-27  Score=187.45  Aligned_cols=157  Identities=10%  Similarity=-0.015  Sum_probs=126.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||++++...++.||.|+.........+....+..|.......+|+|++.      ..+..+++++++++++|..+++.+.
T Consensus        47 Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~  126 (286)
T 3uqc_A           47 FWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSP  126 (286)
T ss_dssp             EEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCCEEEHHHHHTTCC
T ss_pred             EEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEEEecCCCCHHHHHhcCC
Confidence            6899998888888888765443222223355777777788889998763      3345668899999999999997654


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                       ...++..++.|++.||.|||+   .+|+||||||+||+++.++.++|++++                      |++   
T Consensus       127 -~~~~~~~i~~ql~~aL~~lH~---~givH~Dikp~NIll~~~g~~kl~~~~----------------------~~~---  177 (286)
T 3uqc_A          127 -SPVGAIRAMQSLAAAADAAHR---AGVALSIDHPSRVRVSIDGDVVLAYPA----------------------TMP---  177 (286)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEEETTSCEEECSCC----------------------CCT---
T ss_pred             -ChHHHHHHHHHHHHHHHHHHH---CCCccCCCCcccEEEcCCCCEEEEecc----------------------ccC---
Confidence             566789999999999999999   999999999999999999999987432                      333   


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                          +++.++||||+||++|||++|+.||.......
T Consensus       178 ----~~~~~~Di~slG~il~elltg~~Pf~~~~~~~  209 (286)
T 3uqc_A          178 ----DANPQDDIRGIGASLYALLVNRWPLPEAGVRS  209 (286)
T ss_dssp             ----TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCC
T ss_pred             ----CCCchhHHHHHHHHHHHHHHCCCCCCcCCcch
Confidence                36889999999999999999999998766543

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.93  E-value=2e-26  Score=181.89  Aligned_cols=153  Identities=20%  Similarity=0.281  Sum_probs=119.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHH-HHhccccccccc----------cccceEEEEEccCCchhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRM-IAADNFSNLVGS----------EDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~----------~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||++++...++.||.|+.+...        .+..|... ....+|++++..          .....++++++++++|..+
T Consensus        34 V~~~~~~~~~~~vaiK~~~~~~--------~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~  105 (299)
T 3m2w_A           34 VLQIFNKRTQEKFALKMLQDCP--------KARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSR  105 (299)
T ss_dssp             EEEEEETTTCCEEEEEEEECSH--------HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEECCCCSCBHHHH
T ss_pred             EEEEEEcCCCcEEEEEEecccH--------HHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEeecCCCcHHHH
Confidence            6888888888888888754322        12233322 355577776531          3445688899999999988


Q ss_pred             hccC---CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC---CCceEEeeeecceeccccCcccccCCC
Q 044746           70 CKKN---ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHITSTGR  143 (202)
Q Consensus        70 ~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~---~~~~kl~dfgl~~~~~~~~~~~~~~~~  143 (202)
                      +...   .+++..+..++.|++.||.|||+   .+++||||||+||+++.   ++.++|+|||++....           
T Consensus       106 l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~-----------  171 (299)
T 3m2w_A          106 IQDRGDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-----------  171 (299)
T ss_dssp             HHHCTTCCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECT-----------
T ss_pred             HHhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEecCCCCCcEEEeccccccccc-----------
Confidence            8654   59999999999999999999999   99999999999999997   7899999999886432           


Q ss_pred             CCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                                   +..++.++|+||+||+++||++|+.||.....
T Consensus       172 -------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~  203 (299)
T 3m2w_A          172 -------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG  203 (299)
T ss_dssp             -------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC---
T ss_pred             -------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcc
Confidence                         13467899999999999999999999976543

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.92  E-value=9e-28  Score=205.14  Aligned_cols=146  Identities=14%  Similarity=0.044  Sum_probs=99.0

Q ss_pred             cccCCcHHHHHHhc-cccccc------cccccceEEEEEccCCchhhhhccC-CCCHHHHHHHHHHHHHHHHHHHhCCCC
Q 044746           29 PIRFTSPQRMIAAD-NFSNLV------GSEDTETYIKGFLAMGPFYLLCKKN-ILGFGQLREIEVSTSKGIAYLHEECRQ  100 (202)
Q Consensus        29 ~~~~~~~~~~~~~~-~~~~~i------~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~~~  100 (202)
                      ..+|..|...+... +|+|++      ...+..+++|++++|++|.+++..+ .++..   .|+.||+.||+|+|+   +
T Consensus       285 ~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d~i~~~~~l~~~---~I~~QIl~AL~ylH~---~  358 (569)
T 4azs_A          285 KYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAAGEEIDRE---KILGSLLRSLAALEK---Q  358 (569)
T ss_dssp             HHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEEECCCSEEHHHHHHTTCCCCHH---HHHHHHHHHHHHHHH---T
T ss_pred             HHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEEecCCCCcHHHHHHhCCCCCHH---HHHHHHHHHHHHHHH---C
Confidence            34566776666654 566654      2455678999999999999998654 46653   588999999999999   9


Q ss_pred             CeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCC
Q 044746          101 KIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR  180 (202)
Q Consensus       101 ~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~  180 (202)
                      |||||||||+|||++.++.+||+|||+|+.......  .....+||+.|+|||++.+. +..++|+||+|++++++.++.
T Consensus       359 GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~--~~~t~vGTp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l~~~~  435 (569)
T 4azs_A          359 GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCS--WPTNLVQSFFVFVNELFAEN-KSWNGFWRSAPVHPFNLPQPW  435 (569)
T ss_dssp             TCEESCCCGGGEEECTTSCEEECCCTTEESCC---C--CSHHHHHHHHHHHHHHC------------------CCCCTTH
T ss_pred             CceeccCchHhEEECCCCCEEEeecccCeeCCCCCc--cccCceechhhccHHHhCCC-CCCcccccccccchhhhcccc
Confidence            999999999999999999999999999986543322  12335689999999998764 567899999999887766554


Q ss_pred             CCC
Q 044746          181 RNL  183 (202)
Q Consensus       181 ~p~  183 (202)
                      .|+
T Consensus       436 ~~~  438 (569)
T 4azs_A          436 SNW  438 (569)
T ss_dssp             HHH
T ss_pred             chh
Confidence            443

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.85  E-value=2.6e-23  Score=176.62  Aligned_cols=143  Identities=17%  Similarity=0.192  Sum_probs=116.5

Q ss_pred             ccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeE
Q 044746           30 IRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIV  103 (202)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~ii  103 (202)
                      .++..|..+....+|+|++.      .....+++++++++++|..++..       +..++.|++.||.|||+   ++|+
T Consensus       384 ~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVmE~~~ggsL~~~l~~-------~~~i~~qi~~aL~~LH~---~gIi  453 (540)
T 3en9_A          384 SRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMMSYINGKLAKDVIED-------NLDIAYKIGEIVGKLHK---NDVI  453 (540)
T ss_dssp             HHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEEECCCSEEHHHHSTT-------CTHHHHHHHHHHHHHHH---TTEE
T ss_pred             HHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEEECCCCCCHHHHHHH-------HHHHHHHHHHHHHHHHH---CcCc
Confidence            44677888888889999871      23445799999999999998876       66899999999999999   9999


Q ss_pred             EecCCCCcEEEcCCCceEEeeeecceeccccCccc-----ccCCCCCCCcccCCcccCC--CCCCchhhHHHHHHHHHHH
Q 044746          104 HYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-----TSTGRRRTPGCEAPELWMP--YSVTQKCDVFSFGMLLFEV  176 (202)
Q Consensus       104 Hrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~-----~~~~~~gt~~y~aPe~~~~--~~~~~~~Diws~G~~l~el  176 (202)
                      ||||||+|||++.  .+||+|||+++.........     ......||+.|+|||++..  ..|+..+|+||..+-..+-
T Consensus       454 HrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~  531 (540)
T 3en9_A          454 HNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKD  531 (540)
T ss_dssp             CTTCCTTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred             cCCCCHHHEEECC--eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            9999999999998  99999999999765432211     1123567999999999976  5677888999999888888


Q ss_pred             HcCCCCCc
Q 044746          177 VGRRRNLE  184 (202)
Q Consensus       177 ~~g~~p~~  184 (202)
                      +.++.++.
T Consensus       532 v~~r~rY~  539 (540)
T 3en9_A          532 VERRARYV  539 (540)
T ss_dssp             HHTCSCCC
T ss_pred             HHhccccC
Confidence            87777764

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.70  E-value=1.4e-18  Score=136.24  Aligned_cols=130  Identities=11%  Similarity=-0.051  Sum_probs=88.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccC---------------CcccCCcHHHHHHhcccccccc--ccccceEEEEEccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMD---------------KPIRFTSPQRMIAADNFSNLVG--SEDTETYIKGFLAM   63 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~   63 (202)
                      ||++++ .+++.||.|+.+........               ....+..|.......++.++.+  ..+...++++++++
T Consensus       106 Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~~~v~~~~~~~~~~lvmE~~~g  184 (282)
T 1zar_A          106 VFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWEGNAVLMELIDA  184 (282)
T ss_dssp             EEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEETTEEEEECCCC
T ss_pred             EEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccCCCcCeEEeccceEEEEEecCC
Confidence            688888 66677777765432211110               1122444544444433243332  22445799999999


Q ss_pred             CchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCC
Q 044746           64 GPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGR  143 (202)
Q Consensus        64 ~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~  143 (202)
                      ++|.. +.     ......++.|++.||.|||+   .+++||||||+||+++ ++.++|+|||+++.             
T Consensus       185 ~~L~~-l~-----~~~~~~i~~qi~~~l~~lH~---~giiHrDlkp~NILl~-~~~vkl~DFG~a~~-------------  241 (282)
T 1zar_A          185 KELYR-VR-----VENPDEVLDMILEEVAKFYH---RGIVHGDLSQYNVLVS-EEGIWIIDFPQSVE-------------  241 (282)
T ss_dssp             EEGGG-CC-----CSCHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEE-TTEEEECCCTTCEE-------------
T ss_pred             CcHHH-cc-----hhhHHHHHHHHHHHHHHHHH---CCCEeCCCCHHHEEEE-CCcEEEEECCCCeE-------------
Confidence            99987 32     23456799999999999999   9999999999999999 99999999999864             


Q ss_pred             CCCCcccCCcccC
Q 044746          144 RRTPGCEAPELWM  156 (202)
Q Consensus       144 ~gt~~y~aPe~~~  156 (202)
                        +..++|||++.
T Consensus       242 --~~~~~a~e~l~  252 (282)
T 1zar_A          242 --VGEEGWREILE  252 (282)
T ss_dssp             --TTSTTHHHHHH
T ss_pred             --CCCCCHHHHHH
Confidence              33456787764

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.45  E-value=2.7e-14  Score=110.33  Aligned_cols=80  Identities=15%  Similarity=0.122  Sum_probs=61.7

Q ss_pred             ccccccccccceEEEEEccC-C----chhhhhccCCCCHHHHHHHHHHHHHHHHHHH-hCCCCCeEEecCCCCcEEEcCC
Q 044746           44 FSNLVGSEDTETYIKGFLAM-G----PFYLLCKKNILGFGQLREIEVSTSKGIAYLH-EECRQKIVHYDIKPESVLLDEN  117 (202)
Q Consensus        44 ~~~~i~~~~~~~~~~~~~~~-~----~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH-~~~~~~iiHrdlk~~nil~~~~  117 (202)
                      ++..+.. ....++++++.+ |    +|......  .++..+..++.|++.||.||| +   .+|+||||||.|||++. 
T Consensus       134 ~p~~~~~-~~~~lVmE~~g~~g~~~~~L~~~~~~--~~~~~~~~i~~qi~~~l~~lH~~---~givHrDlkp~NILl~~-  206 (258)
T 1zth_A          134 VPQPYTY-MKNVLLMEFIGEDELPAPTLVELGRE--LKELDVEGIFNDVVENVKRLYQE---AELVHADLSEYNIMYID-  206 (258)
T ss_dssp             CCCEEEE-ETTEEEEECCEETTEECCBHHHHGGG--GGGSCHHHHHHHHHHHHHHHHHT---SCEECSSCSTTSEEESS-
T ss_pred             CCeEEEc-CCCEEEEEecCCCCCccccHHHHhhc--cChHHHHHHHHHHHHHHHHHHHH---CCEEeCCCCHHHEEEcC-
Confidence            3444443 345688999842 4    55544322  235577899999999999999 8   99999999999999988 


Q ss_pred             CceEEeeeecceec
Q 044746          118 FFPKAADFGLAKLY  131 (202)
Q Consensus       118 ~~~kl~dfgl~~~~  131 (202)
                       .++|+|||+|...
T Consensus       207 -~~~liDFG~a~~~  219 (258)
T 1zth_A          207 -KVYFIDMGQAVTL  219 (258)
T ss_dssp             -SEEECCCTTCEET
T ss_pred             -cEEEEECcccccC
Confidence             8999999999754

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.16  E-value=1.5e-11  Score=99.96  Aligned_cols=69  Identities=14%  Similarity=0.138  Sum_probs=57.2

Q ss_pred             eEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC----------ceEEee
Q 044746           55 TYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF----------FPKAAD  124 (202)
Q Consensus        55 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~----------~~kl~d  124 (202)
                      .+++++++++++..+..     .+....++.|++.+|.+||+   .+||||||||.|||++.++          .+.++|
T Consensus       187 ~LVME~i~G~~L~~l~~-----~~~~~~l~~qll~~l~~lH~---~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID  258 (397)
T 4gyi_A          187 TIVMSLVDALPMRQVSS-----VPDPASLYADLIALILRLAK---HGLIHGDFNEFNILIREEKDAEDPSSITLTPIIIX  258 (397)
T ss_dssp             EEEEECCSCEEGGGCCC-----CSCHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEEEEECSSCTTSEEEEEEECC
T ss_pred             eEEEEecCCccHhhhcc-----cHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHEEEeCCCCcccccccccceEEEE
Confidence            58999999988866543     23456788999999999999   9999999999999998766          388999


Q ss_pred             eecceec
Q 044746          125 FGLAKLY  131 (202)
Q Consensus       125 fgl~~~~  131 (202)
                      |+-+...
T Consensus       259 ~~Q~V~~  265 (397)
T 4gyi_A          259 FPQMVSM  265 (397)
T ss_dssp             CTTCEET
T ss_pred             eCCcccC
Confidence            9977654

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.31  E-value=4.4e-07  Score=69.45  Aligned_cols=84  Identities=8%  Similarity=-0.011  Sum_probs=60.7

Q ss_pred             ccccccc---ccccceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCC---------------------
Q 044746           43 NFSNLVG---SEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEEC---------------------   98 (202)
Q Consensus        43 ~~~~~i~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---------------------   98 (202)
                      ..|.+++   ..+..++++++++|.++.....    +......++.+++.++..||+..                     
T Consensus        71 ~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~~~----~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~  146 (263)
T 3tm0_A           71 PVPKVLHFERHDGWSNLLMSEADGVLCSEEYE----DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLL  146 (263)
T ss_dssp             CCCCEEEEEEETTEEEEEEECCSSEEHHHHCC----TTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEecCCceEEEEEecCCeehhhccC----CcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHH
Confidence            3445553   3345568999999998876531    22334578889999999999811                     


Q ss_pred             -----------------------------------CCCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746           99 -----------------------------------RQKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus        99 -----------------------------------~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                                                         ...++|+|++|.||+++....+.++||+.+..
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T 3tm0_A          147 NNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             HTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             hccccccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence                                               13489999999999998766667999987754

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.18  E-value=9.2e-07  Score=67.21  Aligned_cols=80  Identities=13%  Similarity=0.103  Sum_probs=55.7

Q ss_pred             cccccccc---ccceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCC----------------------
Q 044746           44 FSNLVGSE---DTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEEC----------------------   98 (202)
Q Consensus        44 ~~~~i~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~----------------------   98 (202)
                      .|.+++..   +...++++++++.++.  ..  ..+   ...++.+++..|..||+..                      
T Consensus        77 vP~~~~~~~~~~~~~~v~e~i~G~~l~--~~--~~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~  149 (264)
T 1nd4_A           77 CAAVLDVVTEAGRDWLLLGEVPGQDLL--SS--HLA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRME  149 (264)
T ss_dssp             BCCEEEEEECSSCEEEEEECCSSEETT--TS--CCC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHH
T ss_pred             CCeEEEeccCCCCCEEEEEecCCcccC--cC--cCC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHh
Confidence            34455432   3457889999998884  21  122   2356778888888888621                      


Q ss_pred             ---------------------------------CCCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746           99 ---------------------------------RQKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus        99 ---------------------------------~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                                                       ...++|+|++|.||+++.++.+.++||+.+..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~  214 (264)
T 1nd4_A          150 AGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV  214 (264)
T ss_dssp             TTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             cCCccchhhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence                                             01299999999999998776677999998754

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.04  E-value=1.4e-06  Score=68.36  Aligned_cols=130  Identities=16%  Similarity=0.082  Sum_probs=82.3

Q ss_pred             ceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCC-----------------------------------
Q 044746           54 ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEEC-----------------------------------   98 (202)
Q Consensus        54 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~-----------------------------------   98 (202)
                      .++++++++|.++..... ..++..+...++.+++..+..||+..                                   
T Consensus        91 ~~~vm~~i~G~~l~~~~~-~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (304)
T 3sg8_A           91 SFAGFTKIKGVPLTPLLL-NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQ  169 (304)
T ss_dssp             SCEEEECCCCEECCHHHH-HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHH
T ss_pred             ceEEEcccCCeECCcccc-ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCccc
Confidence            456788899888754321 35677788888888888888888611                                   


Q ss_pred             --------------------CCCeEEecCCCCcEEEcC--CCceEEeeeecceeccccCcccccCCCCCCCcccCCcccC
Q 044746           99 --------------------RQKIVHYDIKPESVLLDE--NFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWM  156 (202)
Q Consensus        99 --------------------~~~iiHrdlk~~nil~~~--~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~  156 (202)
                                          ...++|+|++|.||+++.  ...+.++||+.+...............  . .-..|+...
T Consensus       170 ~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~--~-~~~~~~~~~  246 (304)
T 3sg8_A          170 MKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMED--D-EEYGMEFVS  246 (304)
T ss_dssp             HHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCT--T-TSCCHHHHH
T ss_pred             HHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhh--c-cccCHHHHH
Confidence                                135799999999999987  556789999988753221110000000  0 001111110


Q ss_pred             ------CCC--------CCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          157 ------PYS--------VTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       157 ------~~~--------~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                            +..        .....+.|+++.+++.+.+|.++|....
T Consensus       247 ~~l~~Y~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~g~~~~~~~g  291 (304)
T 3sg8_A          247 KILNHYKHKDIPTVLEKYRMKEKYWSFEKIIYGKEYGYMDWYEEG  291 (304)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence                  000        1122578999999999999999886443

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=97.81  E-value=4.4e-05  Score=61.04  Aligned_cols=78  Identities=18%  Similarity=0.176  Sum_probs=61.2

Q ss_pred             ccceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCC---------------------------------
Q 044746           52 DTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEEC---------------------------------   98 (202)
Q Consensus        52 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---------------------------------   98 (202)
                      +..+++++++++..+.... ...++..+...++.+++..|..||+..                                 
T Consensus       114 g~~~~vme~v~G~~l~~~~-~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (359)
T 3dxp_A          114 GRAFYIMEFVSGRVLWDQS-LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETE  192 (359)
T ss_dssp             SSCEEEEECCCCBCCCCTT-CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCS
T ss_pred             CCeEEEEEecCCeecCCCc-cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCc
Confidence            3467899999987774321 234778889999999999999999731                                 


Q ss_pred             ----------------------CCCeEEecCCCCcEEEcCCC--ceEEeeeeccee
Q 044746           99 ----------------------RQKIVHYDIKPESVLLDENF--FPKAADFGLAKL  130 (202)
Q Consensus        99 ----------------------~~~iiHrdlk~~nil~~~~~--~~kl~dfgl~~~  130 (202)
                                            ...++|+|+++.||+++.++  .+.++||+.+..
T Consensus       193 ~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          193 SIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             CCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             CChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence                                  25699999999999998764  368999998875

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=96.56  E-value=0.0014  Score=49.88  Aligned_cols=85  Identities=12%  Similarity=0.109  Sum_probs=56.5

Q ss_pred             ccccccc---ccccceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCC---------------------
Q 044746           43 NFSNLVG---SEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEEC---------------------   98 (202)
Q Consensus        43 ~~~~~i~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---------------------   98 (202)
                      ..|.+++   ..+..+++++++++.++.......   ......+..+++..|.-||+..                     
T Consensus        81 PVP~v~~~~~~~~~~~lvme~l~G~~~~~~~~~~---~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~  157 (272)
T 4gkh_A           81 PLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEY---PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRM  157 (272)
T ss_dssp             CCCCEEEEEEETTEEEEEEECCCSEEHHHHHHHC---GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHH
T ss_pred             CcCeEEEEEEECCeEEEEEEeeCCccccccccCC---HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHH
Confidence            3456654   345567899999988776544321   2233445566666666666411                     


Q ss_pred             ----------------------------------CCCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746           99 ----------------------------------RQKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus        99 ----------------------------------~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                                                        ...++|+|+.+.||+++..+.+-|+||+.+..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~  223 (272)
T 4gkh_A          158 NNGLVDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI  223 (272)
T ss_dssp             HTTCCCGGGCCGGGTTCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             HHhhhhhhhccccccchHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence                                              01368999999999999877778999998764

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=96.45  E-value=0.007  Score=47.21  Aligned_cols=32  Identities=25%  Similarity=0.414  Sum_probs=25.7

Q ss_pred             CCeEEecCCCCcEEEcC---CCc-eEEeeeecceec
Q 044746          100 QKIVHYDIKPESVLLDE---NFF-PKAADFGLAKLY  131 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~---~~~-~kl~dfgl~~~~  131 (202)
                      ..++|+|+.+.|++++.   ++. +.++||+.+..-
T Consensus       190 ~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~g  225 (306)
T 3tdw_A          190 PRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAIS  225 (306)
T ss_dssp             CEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEE
T ss_pred             CeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCC
Confidence            35699999999999987   344 589999987653

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=95.93  E-value=0.0096  Score=46.61  Aligned_cols=31  Identities=23%  Similarity=0.224  Sum_probs=27.9

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..++|+|+.+.||+++.++.+.++||+.+..
T Consensus       222 ~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~  252 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGENEQIWVIDLDTVSF  252 (346)
T ss_dssp             CCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred             CceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence            7899999999999998778899999998764

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=95.67  E-value=0.022  Score=45.09  Aligned_cols=31  Identities=16%  Similarity=0.150  Sum_probs=26.5

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..++|+|+.+.||+++....+.++||+.+..
T Consensus       222 ~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~~  252 (357)
T 3ats_A          222 PVLLWGDARVGNVLYRDFQPVAVLDWEMVAL  252 (357)
T ss_dssp             CEEECSSCSGGGEEEETTEEEEECCGGGCEE
T ss_pred             ceEEeCCCCCCeEEEeCCcEEEEEccccccc
Confidence            5789999999999998654578999998864

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=94.57  E-value=0.032  Score=45.39  Aligned_cols=31  Identities=19%  Similarity=0.278  Sum_probs=27.5

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeecceec
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAKLY  131 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~  131 (202)
                      ..++|+|++|.||+++.++ +.++||+.+..-
T Consensus       232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G  262 (420)
T 2pyw_A          232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFYG  262 (420)
T ss_dssp             CEEECSCCSGGGEEECSSC-EEECCCTTCEEE
T ss_pred             CeEEecCCCCCcEEEeCCC-CEEEeCcccccC
Confidence            7899999999999998776 999999988753

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=93.41  E-value=0.049  Score=44.12  Aligned_cols=29  Identities=24%  Similarity=0.309  Sum_probs=24.7

Q ss_pred             eEEecCCCCcEEE------cCCCceEEeeeeccee
Q 044746          102 IVHYDIKPESVLL------DENFFPKAADFGLAKL  130 (202)
Q Consensus       102 iiHrdlk~~nil~------~~~~~~kl~dfgl~~~  130 (202)
                      ++|+|+.+.||++      +.+..+.++||..|..
T Consensus       246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~  280 (401)
T 3g15_A          246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY  280 (401)
T ss_dssp             EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred             eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence            5799999999999      3457799999998875

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=93.27  E-value=0.023  Score=44.24  Aligned_cols=31  Identities=19%  Similarity=0.247  Sum_probs=26.8

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..++|+|+.+.||+++.++.+.++||+.+..
T Consensus       187 ~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~  217 (322)
T 2ppq_A          187 AGVIHADLFQDNVFFLGDELSGLIDFYFACN  217 (322)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             cccCCCCCCccCEEEeCCceEEEecchhccC
Confidence            5789999999999998876668999987764

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=92.62  E-value=0.16  Score=39.73  Aligned_cols=32  Identities=28%  Similarity=0.208  Sum_probs=27.6

Q ss_pred             CCeEEecCCCCcEEEcCC----CceEEeeeecceec
Q 044746          100 QKIVHYDIKPESVLLDEN----FFPKAADFGLAKLY  131 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~----~~~kl~dfgl~~~~  131 (202)
                      ..++|+|+.+.||+++.+    +.+.++||+.+..-
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G  218 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG  218 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred             CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence            689999999999999864    67899999988753

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=92.39  E-value=1.1  Score=33.27  Aligned_cols=96  Identities=9%  Similarity=0.020  Sum_probs=59.4

Q ss_pred             chhhhhc--cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCC
Q 044746           65 PFYLLCK--KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTG  142 (202)
Q Consensus        65 ~l~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~  142 (202)
                      +|..++.  ..+++++++-.++.|.+.+|.-+-... .. ..+=..|..|++..+|.+.+.+ ..+.    .        
T Consensus        34 SL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~~~-~~-~~~i~~~~~i~l~~dG~V~f~~-~~s~----~--------   98 (229)
T 2yle_A           34 SLEEILRLYNQPINEEQAWAVCYQCCGSLRAAARRR-QP-RHRVRSAAQIRVWRDGAVTLAP-AADD----A--------   98 (229)
T ss_dssp             EHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT-CC-CCCCCSGGGEEEETTSCEEECC-C----------------
T ss_pred             cHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcc-cC-CceecCCcceEEecCCceeccc-cccc----c--------
Confidence            6777764  567999999999999999987662100 11 1223446788888898887764 2111    0        


Q ss_pred             CCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc
Q 044746          143 RRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG  178 (202)
Q Consensus       143 ~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~  178 (202)
                        ....+.|||... ...+.+.=|||+|+++|.-+-
T Consensus        99 --~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALD  131 (229)
T 2yle_A           99 --GEPPPVAGKLGY-SQCMETEVIESLGIIIYKALD  131 (229)
T ss_dssp             ----------CCSS-SSSCHHHHHHHHHHHHHHHHT
T ss_pred             --cccCCCChhhcc-ccchHHHHHHHHHHHHHHHhh
Confidence              022355787653 344677889999999997654

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=91.31  E-value=0.19  Score=39.03  Aligned_cols=29  Identities=21%  Similarity=0.167  Sum_probs=25.2

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..++|+|+++.||+++ + .+.++||+.+..
T Consensus       195 ~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          195 VLRLHGDCHAGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             CEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred             eeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence            5689999999999998 4 789999987754

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=89.58  E-value=0.29  Score=40.44  Aligned_cols=16  Identities=13%  Similarity=0.304  Sum_probs=14.6

Q ss_pred             CCeEEecCCCCcEEEc
Q 044746          100 QKIVHYDIKPESVLLD  115 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~  115 (202)
                      ..++|+|+.+.|||++
T Consensus       290 ~v~cHnDl~~gNIL~~  305 (458)
T 2qg7_A          290 IVLCHCDLLSSNIINT  305 (458)
T ss_dssp             EEEECSCCCGGGEEEC
T ss_pred             eeEEecCCCCCcEEee
Confidence            4689999999999998

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=89.39  E-value=0.15  Score=40.51  Aligned_cols=30  Identities=13%  Similarity=0.306  Sum_probs=24.9

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..++|+|+.+.||+++.+. +.++||..+..
T Consensus       212 ~~l~HgDl~~~Nil~~~~~-~~lID~e~a~~  241 (369)
T 3c5i_A          212 IVFCHNDLQENNIINTNKC-LRLIDFEYSGF  241 (369)
T ss_dssp             EEEECSCCCGGGEEECC-C-EEECCCTTCEE
T ss_pred             eEEEeCCCCcccEEecCCc-EEEEEecCCCC
Confidence            5689999999999997655 89999987764

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=88.97  E-value=1.2  Score=32.90  Aligned_cols=106  Identities=8%  Similarity=0.131  Sum_probs=74.3

Q ss_pred             eEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceecccc
Q 044746           55 TYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE  134 (202)
Q Consensus        55 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~  134 (202)
                      .+...+-.......+..-...+..+..+++..++....++++     -+|--|.|+|++++.++.+++.-.|+...    
T Consensus        58 ~v~~~y~~~~~~~~f~~ik~~~~~eKlr~l~ni~~l~~~~~~-----r~tf~L~P~NL~f~~~~~p~i~~RGik~~----  128 (215)
T 4ann_A           58 SFQIHYDINDNHTPFDNIKSFTKNEKLRYLLNIKNLEEVNRT-----RYTFVLAPDELFFTRDGLPIAKTRGLQNV----  128 (215)
T ss_dssp             EEEEEECCCTTSEEGGGGGGSCHHHHHHHHHHGGGGGGGGGS-----SEECCCSGGGEEECTTSCEEESCCEETTT----
T ss_pred             EEEEEEEcCcccCCHHHHHhcCHHHHHHHHHHHHHHHHHhcC-----ceEEEEecceEEEcCCCCEEEEEccCccC----
Confidence            455556555555555666678899999999999887755543     46888999999999999999998875421    


Q ss_pred             CcccccCCCCCCCcccCCcccCCCCCCchhhHH-HHHHHHHHHHcCCCCCcchhccc
Q 044746          135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVF-SFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       135 ~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diw-s~G~~l~el~~g~~p~~~~~~~~  190 (202)
                                     ++|.     ..+ ..|.+ .+=|++..+++++..|+.--...
T Consensus       129 ---------------l~P~-----~~~-ee~fL~qyKAliiall~~K~~Fe~l~~G~  164 (215)
T 4ann_A          129 ---------------VDPL-----PVS-EAEFLTRYKALVICAFNEKQSFDALVEGN  164 (215)
T ss_dssp             ---------------BSCC-----CCC-HHHHHHHHHHHHHHHHCTTCCHHHHHHSC
T ss_pred             ---------------CCCC-----CCC-HHHHHHHHHHHHHHHHcCCCCHHHHHcCh
Confidence                           1221     122 33444 56788888999988887655443

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=88.67  E-value=0.33  Score=38.21  Aligned_cols=31  Identities=23%  Similarity=0.215  Sum_probs=27.6

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..++|+|+.+.|++++.++.+.++||+.+..
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            5789999999999998777899999987765

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=88.55  E-value=0.36  Score=37.09  Aligned_cols=30  Identities=20%  Similarity=0.111  Sum_probs=25.4

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..++|+|+.+.||+ ..++.+.++||..+..
T Consensus       173 ~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~  202 (301)
T 3dxq_A          173 LAACHCDPLCENFL-DTGERMWIVDWEYSGM  202 (301)
T ss_dssp             CEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             ceeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence            56899999999999 5566789999988764

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=87.76  E-value=0.23  Score=39.85  Aligned_cols=30  Identities=23%  Similarity=0.317  Sum_probs=25.7

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..++|+|+.+.||+++.+ .+.++||..+..
T Consensus       227 ~~L~HGDl~~~Nil~~~~-~~~lID~e~a~~  256 (397)
T 2olc_A          227 ETLIHGDLHTGSIFASEH-ETKVIDPEFAFY  256 (397)
T ss_dssp             CEEECSCCSGGGEEECSS-CEEECCCTTCEE
T ss_pred             CceeeCCCCcCcEEEeCC-CeEEEeCccccc
Confidence            689999999999999765 489999987764

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=87.42  E-value=0.21  Score=40.79  Aligned_cols=31  Identities=23%  Similarity=0.265  Sum_probs=25.3

Q ss_pred             CCeEEecCCCCcEEEcCC----------------------------CceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDEN----------------------------FFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~----------------------------~~~kl~dfgl~~~  130 (202)
                      ..++|+|+.+.||+++.+                            +.+.++||..+..
T Consensus       249 ~v~~H~Dl~~gNiL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lIDfEya~~  307 (429)
T 1nw1_A          249 VTFCHNDLQEGNILLPKASSGNIRMPSLSDETQALGNSLSAFNPADPRLVLIDFEYASY  307 (429)
T ss_dssp             EEEECSCCCGGGEEEEC------------------------------CCEECCCTTCEE
T ss_pred             eEEEeCCCCCCeEEeeCCccccccccccccccccccccccccccCCCeEEEEecccCCc
Confidence            468999999999999875                            6789999987764

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=86.26  E-value=0.32  Score=39.13  Aligned_cols=31  Identities=23%  Similarity=0.221  Sum_probs=27.2

Q ss_pred             CCeEEecCCCCcEEEcCC----CceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDEN----FFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~----~~~kl~dfgl~~~  130 (202)
                      ..++|+|+.+.||+++.+    +.+.++||..+..
T Consensus       220 ~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~  254 (379)
T 3feg_A          220 VVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY  254 (379)
T ss_dssp             EEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred             cEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence            468999999999999876    6889999998874

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=85.95  E-value=2.2  Score=31.50  Aligned_cols=104  Identities=6%  Similarity=0.076  Sum_probs=67.9

Q ss_pred             eEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHH-HHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccc
Q 044746           55 TYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIA-YLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNR  133 (202)
Q Consensus        55 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~-~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~  133 (202)
                      .+...+........+..-..++..+..+++..++.... +++     .-+|--|.|+|++++.++.+++.-.|+-..   
T Consensus        62 ~~~i~y~~~~~~~~f~~i~~~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~NL~f~~~~~p~i~hRGi~~~---  133 (219)
T 4ano_A           62 EVKVVIKPPSSFLTFAAIRKTTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPENLMFNRALEPFFLHVGVKES---  133 (219)
T ss_dssp             EEEEEEECCTTCEEHHHHHTSCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGGGEEECTTCCEEESCCEETTT---
T ss_pred             EEEEEEEcCcccCcHHHHHhcCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCceEEEeCCCcEEEEEcCCccc---
Confidence            34444443333333334467888999999999888665 444     456888999999999999999998885421   


Q ss_pred             cCcccccCCCCCCCcccCCcccCCCCCCchhhHH-HHHHHHHHHHcCCCCCcchhc
Q 044746          134 EHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVF-SFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       134 ~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diw-s~G~~l~el~~g~~p~~~~~~  188 (202)
                                      ++|.     .. ...|.+ .+=|++..++.++..|+.--.
T Consensus       134 ----------------lpP~-----e~-~ee~fl~qyKali~all~~K~~Fe~l~~  167 (219)
T 4ano_A          134 ----------------LPPD-----EW-DDERLLREVKATVLALTEGEYRFDEYLK  167 (219)
T ss_dssp             ----------------BSSC-----SC-CHHHHHHHHHHHHHHHTTCSSCHHHHHH
T ss_pred             ----------------CCCC-----CC-CHHHHHHHHHHHHHHHHcCCCCHHHHHh
Confidence                            2222     11 233444 566777788888777765444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	2e-24
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	2e-22
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	1e-21
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	3e-21
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	8e-21
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-20
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	8e-20
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	9e-20
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-19
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	5e-19
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	6e-19
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	6e-19
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-18
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	2e-18
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-18
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	3e-18
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	6e-18
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	7e-18
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	8e-18
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-17
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-17
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-17
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-17
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	3e-17
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	6e-17
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	8e-17
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	1e-16
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	2e-16
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-16
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	3e-16
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	5e-16
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	1e-15
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-15
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-15
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	6e-15
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-14
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	1e-14
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-14
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-14
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	4e-14
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	6e-14
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	9e-14
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-13
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-13
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-13
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	3e-13
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	8e-13
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	9e-13
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	1e-12
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	4e-12
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	4e-12
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	5e-12
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	6e-12
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-11
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	2e-11
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	5e-11
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	2e-10
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-09
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-09
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	2e-09
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	5e-09
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	4e-08
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	5e-06

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.7 bits (235), Expect = 2e-24
 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L   +      +L +I   T++G+ YLH    + I+H D+K  ++ L E+   K  DFG
Sbjct: 93  HLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFG 149

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYS---VTQKCDVFSFGMLLFEVVGRRR 181
           LA + +R            +    APE+         + + DV++FG++L+E++  + 
Sbjct: 150 LATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 207

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.5 bits (224), Expect = 2e-22
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
             +L K   +    L ++ ++  KG+ YL E  + KI+H D+KP ++L++     K  DF
Sbjct: 92  DQVLKKAGRIPEQILGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDF 149

Query: 126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           G++        + +  G   T    +PE       + + D++S G+ L E+   R 
Sbjct: 150 GVSGQLIDSMAN-SFVG---TRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRY 201

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.0 bits (215), Expect = 1e-21
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 4/105 (3%)

Query: 79  QLREIEVSTSKGIAYLHE--ECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT 136
            +  +    +  +   H   +    ++H D+KP +V LD     K  DFGLA++ N + +
Sbjct: 110 FVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTS 169

Query: 137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
              +     TP   +PE     S  +K D++S G LL+E+     
Sbjct: 170 F--AKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMP 212

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.8 bits (214), Expect = 3e-21
 Identities = 33/168 (19%), Positives = 71/168 (42%), Gaps = 19/168 (11%)

Query: 48  VGSEDTETYIKGFLAM-----GPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEEC---- 98
             ++D  T+ + +L       G  +    +  +    + ++ +ST+ G+A+LH E     
Sbjct: 65  ADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQ 124

Query: 99  -RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN--REHTHITSTGRRRTPGCEAPELW 155
            +  I H D+K +++L+ +N     AD GLA  ++   +   I    R  T    APE+ 
Sbjct: 125 GKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVL 184

Query: 156 MP------YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWFPKW 197
                   +   ++ D+++ G++ +E+  R         + Q  +   
Sbjct: 185 DDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIH-EDYQLPYYDL 231

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (212), Expect = 8e-21
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 73  NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN 132
           N+L F  L       +KG+ +L     +  VH D+   +VL+      K  DFGLA+   
Sbjct: 159 NVLTFEDLLCFAYQVAKGMEFLEF---KSCVHRDLAARNVLVTHGKVVKICDFGLARDIM 215

Query: 133 REHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQE 192
            +  ++     R      APE       T K DV+S+G+LL+E+     N    I     
Sbjct: 216 SDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDAN 275

Query: 193 WF 194
           ++
Sbjct: 276 FY 277

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.6 bits (209), Expect = 1e-20
 Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 15/145 (10%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           +  L K +     +        +  ++Y H    ++++H DIKPE++LL      K ADF
Sbjct: 94  YRELQKLSKFDEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADF 150

Query: 126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR---- 181
           G +                 T     PE+       +K D++S G+L +E +  +     
Sbjct: 151 GWSVHAPSSRRTTLCG----TLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEA 206

Query: 182 ----NLEKEISEGQEWFPKWGREEV 202
                  K IS  +  FP +  E  
Sbjct: 207 NTYQETYKRISRVEFTFPDFVTEGA 231

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (203), Expect = 8e-20
 Identities = 45/195 (23%), Positives = 75/195 (38%), Gaps = 17/195 (8%)

Query: 5   RNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSEDTETYIKGFLAM- 63
              G+TR   +T+     + E      F    +++       LV      +    ++   
Sbjct: 37  TWNGTTRVAIKTLKPGTMSPE-----AFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTE 91

Query: 64  ----GPFYLLCKKNILGFG---QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE 116
               G      K     +    QL ++    + G+AY+    R   VH D++  ++L+ E
Sbjct: 92  YMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGE 148

Query: 117 NFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEV 176
           N   K ADFGLA+L           G +      APE  +    T K DV+SFG+LL E+
Sbjct: 149 NLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTEL 207

Query: 177 VGRRRNLEKEISEGQ 191
             + R     +   +
Sbjct: 208 TTKGRVPYPGMVNRE 222

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 9e-20
 Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 10/121 (8%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
             +L  +  L   Q++ +   T   + YLH+    KI+H D+K  ++L   +   K ADF
Sbjct: 98  AVMLELERPLTESQIQVVCKQTLDALNYLHD---NKIIHRDLKAGNILFTLDGDIKLADF 154

Query: 126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYS-----VTQKCDVFSFGMLLFEVVGRR 180
           G++    R      S     TP   APE+ M  +        K DV+S G+ L E+    
Sbjct: 155 GVSAKNTRTIQRRDS--FIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIE 212

Query: 181 R 181
            
Sbjct: 213 P 213

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 81.8 bits (201), Expect = 2e-19
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 3/133 (2%)

Query: 49  GSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIK 108
                 +     L+            L   +   I    + G+AYL E   +K VH D+ 
Sbjct: 111 SPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---RKFVHRDLA 167

Query: 109 PESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFS 168
             + L+ EN   K ADFGL++       +              PE       T + DV++
Sbjct: 168 TRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWA 227

Query: 169 FGMLLFEVVGRRR 181
           +G++L+E+     
Sbjct: 228 YGVVLWEIFSYGL 240

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (198), Expect = 5e-19
 Identities = 32/169 (18%), Positives = 70/169 (41%), Gaps = 11/169 (6%)

Query: 19  KSLDAMEMDKPIRFTSPQRMIAADNFSNLV-----GSEDTETYI-KGFLAMGPFYLLCKK 72
           + ++  +  K     +   ++  +   N+V          E ++   +LA G    +  +
Sbjct: 51  RQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE 110

Query: 73  NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN 132
             +  GQ+  +     + + +LH     +++H DIK +++LL  +   K  DFG      
Sbjct: 111 TCMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT 167

Query: 133 REHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
            E +  ++     TP   APE+    +   K D++S G++  E++    
Sbjct: 168 PEQSKRST--MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEP 214

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (197), Expect = 6e-19
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 4/129 (3%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           F  +     +     +        G+ YLH      I H DIKPE++LLDE    K +DF
Sbjct: 91  FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDF 147

Query: 126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSV-TQKCDVFSFGMLLFEVVGRRRNLE 184
           GLA ++   +          T    APEL        +  DV+S G++L  ++      +
Sbjct: 148 GLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 207

Query: 185 KEISEGQEW 193
           +     QE+
Sbjct: 208 QPSDSCQEY 216

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (197), Expect = 6e-19
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
              L +   +    + E+    S G+ YL        VH D+   +VLL    + K +DF
Sbjct: 95  NKYLQQNRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDF 151

Query: 126 GLAKLYNREHTHITSTGRRR-TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           GL+K    +  +  +    +      APE    Y  + K DV+SFG+L++E     +
Sbjct: 152 GLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQ 208

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.3 bits (195), Expect = 1e-18
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 7/117 (5%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL-DENFFPKAAD 124
              L +  ++    LR       KG+ +LH      I+H D+K +++ +       K  D
Sbjct: 100 KTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPP-IIHRDLKCDNIFITGPTGSVKIGD 158

Query: 125 FGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
            GLA L               TP   APE++      +  DV++FGM + E+     
Sbjct: 159 LGLATLKRASFA----KAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEY 210

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (194), Expect = 2e-18
 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 4/116 (3%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           F        L   +L ++    ++G+A++ E   +  +H D++  ++L+ +    K ADF
Sbjct: 97  FLKTPSGIKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADF 153

Query: 126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           GLA+L   ++ +    G +      APE     + T K DV+SFG+LL E+V   R
Sbjct: 154 GLARLIE-DNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR 208

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.3 bits (195), Expect = 2e-18
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
             L   K  L   ++  +     +G+AYLH      ++H D+K  ++LL E    K  DF
Sbjct: 103 DLLEVHKKPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDF 159

Query: 126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYS---VTQKCDVFSFGMLLFEVVGRRR 181
           G A +    ++ +       TP   APE+ +         K DV+S G+   E+  R+ 
Sbjct: 160 GSASIMAPANSFVG------TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKP 212

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (193), Expect = 3e-18
 Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 5/136 (3%)

Query: 48  VGSEDTETYIKGFLAMGPFYLLCKKNILGFG--QLREIEVSTSKGIAYLHEECRQKIVHY 105
           +    T   I   +  G      +++    G   L    V  +KG+ YL     +++VH 
Sbjct: 79  ICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYL---EDRRLVHR 135

Query: 106 DIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCD 165
           D+   +VL+      K  DFGLAKL   E     + G +      A E  +    T + D
Sbjct: 136 DLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSD 195

Query: 166 VFSFGMLLFEVVGRRR 181
           V+S+G+ ++E++    
Sbjct: 196 VWSYGVTVWELMTFGS 211

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (191), Expect = 6e-18
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 94  LHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLY--NREHTHITSTGRRRTPGCEA 151
           +     +K VH D+   + +LDE F  K ADFGLA+        +    TG +      A
Sbjct: 143 MKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 202

Query: 152 PELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQ 191
            E       T K DV+SFG+LL+E++ R      +++   
Sbjct: 203 LESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD 242

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.1 bits (189), Expect = 7e-18
 Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 4/116 (3%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           +L+ K+  +    + E+    S G+ YL     +  VH D+   +VLL    + K +DFG
Sbjct: 98  FLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFG 154

Query: 127 LAK-LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           L+K L   +  +   +  +      APE       + + DV+S+G+ ++E +   +
Sbjct: 155 LSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQ 210

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.4 bits (190), Expect = 8e-18
 Identities = 30/140 (21%), Positives = 62/140 (44%), Gaps = 11/140 (7%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
              + K         R     T++ ++ L     + I+H D+KPE++LL+E+   +  DF
Sbjct: 96  LKYIRKIGSFDETCTRFY---TAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDF 152

Query: 126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR---- 181
           G AK+ + E     +     T    +PEL    S  +  D+++ G +++++V        
Sbjct: 153 GTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA 212

Query: 182 ----NLEKEISEGQEWFPKW 197
                + ++I + +  FP+ 
Sbjct: 213 GNEYLIFQKIIKLEYDFPEK 232

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (186), Expect = 2e-17
 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 94  LHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE 153
           +       ++H D+   + L+ EN   K +DFG+ +    +    + TG +      +PE
Sbjct: 114 MAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSS-TGTKFPVKWASPE 172

Query: 154 LWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           ++     + K DV+SFG+L++EV    +
Sbjct: 173 VFSFSRYSSKSDVWSFGVLMWEVFSEGK 200

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (186), Expect = 2e-17
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 71  KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL 130
            +++LG   L +  +   + + YL        VH D+   +VL+ E+   K +DFGL K 
Sbjct: 96  GRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKE 152

Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
            +           +      APE       + K DV+SFG+LL+E+    R
Sbjct: 153 ASSTQDT-----GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGR 198

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.3 bits (187), Expect = 2e-17
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 6/106 (5%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI 138
           QL  +    + G+ YL        VH D+   ++L++ N   K +DFGL++    + +  
Sbjct: 129 QLVGMLRGIAAGMKYLA---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDP 185

Query: 139 TST---GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           T T   G +      APE       T   DV+S+G++++EV+    
Sbjct: 186 TYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGE 231

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 75.9 bits (186), Expect = 2e-17
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 12/121 (9%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           F  L +K  L   + R+I  +  + I  LH+     IVH D+KPE++LLD++   K  DF
Sbjct: 98  FDYLTEKVTLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDF 154

Query: 126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSV------TQKCDVFSFGMLLFEVVGR 179
           G +   +         G   TP   APE+             ++ D++S G++++ ++  
Sbjct: 155 GFSCQLDPGEKLREVCG---TPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAG 211

Query: 180 R 180
            
Sbjct: 212 S 212

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 3e-17
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 1/102 (0%)

Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-TSTGRRRTPGC 149
            A +        VH D+   ++L++ N   K +DFGL+++   +     T++G +     
Sbjct: 120 AAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRW 179

Query: 150 EAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQ 191
            APE       T   DV+SFG++++EV+        E+S  +
Sbjct: 180 TAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHE 221

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (184), Expect = 6e-17
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 3/120 (2%)

Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L    L       +KG+A+L     +  +H D+   ++LL      K  DFGLA+    +
Sbjct: 142 LDLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNILLTHGRITKICDFGLARDIKND 198

Query: 135 HTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEWF 194
             ++     R      APE       T + DV+S+G+ L+E+     +    +    +++
Sbjct: 199 SNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFY 258

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 8e-17
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 3/140 (2%)

Query: 58  KGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDEN 117
             F+          K+ L    L       +KG+ +L     +K +H D+   ++LL E 
Sbjct: 114 NEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEK 170

Query: 118 FFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
              K  DFGLA+   ++  ++     R      APE       T + DV+SFG+LL+E+ 
Sbjct: 171 NVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIF 230

Query: 178 GRRRNLEKEISEGQEWFPKW 197
               +    +   +E+  + 
Sbjct: 231 SLGASPYPGVKIDEEFCRRL 250

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.6 bits (180), Expect = 1e-16
 Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 4/115 (3%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFG 126
           YL   ++     QL E+     + + YL     ++ +H D+   + L+++    K +DFG
Sbjct: 89  YLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFG 145

Query: 127 LAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           L++    +    +S G +       PE+ M    + K D+++FG+L++E+    +
Sbjct: 146 LSRYVLDDEYT-SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGK 199

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (179), Expect = 2e-16
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 71  KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL 130
            +     G L    V  ++G+ YL     ++ +H D+   ++LL      K  DFGL + 
Sbjct: 104 HQGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDFGLMRA 160

Query: 131 YNREHTHITSTGRRR-TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE 189
             +   H      R+      APE     + +   D + FG+ L+E+    +     ++ 
Sbjct: 161 LPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG 220

Query: 190 GQ 191
            Q
Sbjct: 221 SQ 222

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.6 bits (180), Expect = 2e-16
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 4/122 (3%)

Query: 70  CKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK 129
           C +  +    L  +    S  + YL    ++  +H D+   + L+ EN   K ADFGL++
Sbjct: 107 CNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSR 163

Query: 130 LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE 189
           L   +       G +      APE       + K DV++FG+LL+E+     +    I  
Sbjct: 164 LMTGDTYT-AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL 222

Query: 190 GQ 191
            Q
Sbjct: 223 SQ 224

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (179), Expect = 3e-16
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 71  KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL 130
             + L   QL       ++G+ YL +   ++ +H D+   ++L+ EN+  K ADFGL++ 
Sbjct: 120 TASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSRG 176

Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
                               A E       T   DV+S+G+LL+E+V    
Sbjct: 177 QEVYVKKTMGRL---PVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGG 224

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 5e-16
 Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 6/116 (5%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           +     +  +    ++++     +G+ +LH     ++VH D+KP+++L+  +   K ADF
Sbjct: 104 YLDKVPEPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADF 160

Query: 126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           GLA++Y+ +    +      T    APE+ +  S     D++S G +  E+  R+ 
Sbjct: 161 GLARIYSFQMALTSVVV---TLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKP 213

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.3 bits (174), Expect = 1e-15
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
              L     + I++ D+KPE++LLD+N   K  DFG AK        +       TP   
Sbjct: 114 CLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLC-----GTPDYI 168

Query: 151 APELWMPYSVTQKCDVFSFGMLLFEVVGRR--------RNLEKEISEGQEWFPKWGREEV 202
           APE+       +  D +SFG+L++E++               ++I   +  FP +  E+V
Sbjct: 169 APEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDV 228

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.3 bits (174), Expect = 2e-15
 Identities = 27/132 (20%), Positives = 58/132 (43%), Gaps = 6/132 (4%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
            Y L +  +     +R        G+ ++H    + +V+ D+KP ++LLDE+   + +D 
Sbjct: 95  HYHLSQHGVFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDL 151

Query: 126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEK 185
           GLA  ++++  H +  G       E  +  + Y      D FS G +LF+++       +
Sbjct: 152 GLACDFSKKKPHAS-VGTHGYMAPEVLQKGVAY--DSSADWFSLGCMLFKLLRGHSPFRQ 208

Query: 186 EISEGQEWFPKW 197
             ++ +    + 
Sbjct: 209 HKTKDKHEIDRM 220

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 70.9 bits (173), Expect = 2e-15
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLL--DENFFPKAAD 124
            +  + N +   +  E      KG+ ++HE      VH D+KPE+++     +   K  D
Sbjct: 113 KVADEHNKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLID 169

Query: 125 FGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           FGL    + + +   +TG        APE+     V    D++S G+L + ++    
Sbjct: 170 FGLTAHLDPKQSVKVTTGT---AEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLS 223

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 6e-15
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 3/111 (2%)

Query: 71  KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL 130
            +  L    L       ++G+ YL     +K +H D+   +VL+ E+   K ADFGLA+ 
Sbjct: 128 PEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARD 184

Query: 131 YNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
            +    +  +T  R      APE       T + DV+SFG+LL+E+     
Sbjct: 185 IHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGG 235

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (167), Expect = 1e-14
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 8/117 (6%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD--ENFFPKAAD 124
            +      L   ++        + + +LH      I H+DI+PE+++     +   K  +
Sbjct: 91  RINTSAFELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIE 147

Query: 125 FGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           FG A+                 P   APE+     V+   D++S G L++ ++    
Sbjct: 148 FGQARQLKPGDNFRLLFT---APEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGIN 201

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (167), Expect = 1e-14
 Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 20/196 (10%)

Query: 17  IDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV-----GSEDTETYIKGFLAMGP--FYLL 69
           + K +  M+ D        + +  A     L             +       G    Y +
Sbjct: 35  LKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHI 94

Query: 70  CKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK 129
              +     +          G+ +LH    + IV+ D+K +++LLD++   K ADFG+ K
Sbjct: 95  QSCHKFDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFGMCK 151

Query: 130 LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR-------- 181
                     +     TP   APE+ +        D +SFG+LL+E++  +         
Sbjct: 152 ENMLGDAKTNT--FCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEE 209

Query: 182 NLEKEISEGQEWFPKW 197
            L   I     ++P+W
Sbjct: 210 ELFHSIRMDNPFYPRW 225

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (164), Expect = 2e-14
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 1/98 (1%)

Query: 94  LHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE 153
           L     ++ VH DI   +VL+  N   K  DFGL++       +  S G +      APE
Sbjct: 121 LAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKG-KLPIKWMAPE 179

Query: 154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQ 191
                  T   DV+ FG+ ++E++       + +    
Sbjct: 180 SINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND 217

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (165), Expect = 2e-14
 Identities = 34/168 (20%), Positives = 62/168 (36%), Gaps = 8/168 (4%)

Query: 20  SLDAMEMDKPIRFTSPQRMIAADNFSNLV-----GSEDTETYIKGFLAMGPFYLLCKKNI 74
            LD      P        ++   N  N+V        + + Y+               + 
Sbjct: 36  RLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASA 95

Query: 75  LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNRE 134
           L    L  I+    + +  L      +++H D+KP+++L++     K ADFGLA+ +   
Sbjct: 96  LTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP 155

Query: 135 HTHITSTGRRRTPGCEAPELWMPYS-VTQKCDVFSFGMLLFEVVGRRR 181
               T           APE+ +     +   D++S G +  E+V RR 
Sbjct: 156 VRTYTHEVVT--LWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRA 201

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 67.1 bits (163), Expect = 4e-14
 Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 13/122 (10%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFP----- 120
             L           +          +  +HE   + +V+ DIKP++ L+           
Sbjct: 89  DLLDLCGRKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMI 145

Query: 121 KAADFGLAKLYNREHTHITSTGRRR-----TPGCEAPELWMPYSVTQKCDVFSFGMLLFE 175
              DFG+ K Y    T      R +     T    +    +    +++ D+ + G +   
Sbjct: 146 YVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMY 205

Query: 176 VV 177
            +
Sbjct: 206 FL 207

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (163), Expect = 6e-14
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 5/127 (3%)

Query: 56  YIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD 115
           Y+   L     Y L K   L    +        +G+ Y+H      ++H D+KP ++LL+
Sbjct: 87  YLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLN 143

Query: 116 ENFFPKAADFGLAKLYNREHTHITSTGRRRT-PGCEAPE-LWMPYSVTQKCDVFSFGMLL 173
                K  DFGLA++ + +H H              APE +      T+  D++S G +L
Sbjct: 144 TTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCIL 203

Query: 174 FEVVGRR 180
            E++  R
Sbjct: 204 AEMLSNR 210

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 9e-14
 Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 4/134 (2%)

Query: 48  VGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDI 107
                +   +          ++ K N L       I+      +  L    +  I+H D+
Sbjct: 68  AFGHKSNISLVFDFMETDLEVIIKDNSLVL-TPSHIKAYMLMTLQGLEYLHQHWILHRDL 126

Query: 108 KPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE-LWMPYSVTQKCDV 166
           KP ++LLDEN   K ADFGLAK +   +   T      T    APE L+         D+
Sbjct: 127 KPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQV--VTRWYRAPELLFGARMYGVGVDM 184

Query: 167 FSFGMLLFEVVGRR 180
           ++ G +L E++ R 
Sbjct: 185 WAVGCILAELLLRV 198

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 66.2 bits (161), Expect = 1e-13
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 67  YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFP--KAAD 124
            +  +   +   ++        +G+ ++HE     IVH DIKPE+++ +       K  D
Sbjct: 116 RIAAEDYKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIID 172

Query: 125 FGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           FGLA   N +     +T    T    APE+     V    D+++ G+L + ++    
Sbjct: 173 FGLATKLNPDEIVKVTTA---TAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLS 226

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 1e-13
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 6/117 (5%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD-ENFFPKAAD 124
            +    K  L    ++       + +AY+H      I H DIKP+++LLD +    K  D
Sbjct: 110 RHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCD 166

Query: 125 FGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           FG AK   R   +++              ++     T   DV+S G +L E++  + 
Sbjct: 167 FGSAKQLVRGEPNVSYI--CSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQP 221

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (158), Expect = 2e-13
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 11/136 (8%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFF-PKAAD 124
           F  + ++  L     R       + + + H      ++H DIK E++L+D N    K  D
Sbjct: 98  FDFITERGALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLID 154

Query: 125 FGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSV-TQKCDVFSFGMLLFEVVGRRR-- 181
           FG   L          T    T     PE    +    +   V+S G+LL+++V      
Sbjct: 155 FGSGALLKDTVY----TDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPF 210

Query: 182 NLEKEISEGQEWFPKW 197
             ++EI  GQ +F + 
Sbjct: 211 EHDEEIIRGQVFFRQR 226

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (157), Expect = 3e-13
 Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 11/121 (9%)

Query: 66  FYLLCKKNILGFG--QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD---ENFFP 120
           F  +  +    F   +  EI  S  + I YLH      I H D+KPE++L      N   
Sbjct: 97  FSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAIL 153

Query: 121 KAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR 180
           K  DFG AK     ++  T      TP   APE+  P    + CD++S G++++ ++   
Sbjct: 154 KLTDFGFAKETTSHNSLTT---PCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGY 210

Query: 181 R 181
            
Sbjct: 211 P 211

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 8e-13
 Identities = 22/100 (22%), Positives = 39/100 (39%)

Query: 94  LHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE 153
           +      K VH D+   + ++ E+F  K  DFG+ +       +             +PE
Sbjct: 146 MAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPE 205

Query: 154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEW 193
                  T   DV+SFG++L+E+        + +S  Q  
Sbjct: 206 SLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVL 245

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (154), Expect = 9e-13
 Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           F+ L ++ +    + R      ++ ++ L     + +V+ DIK E+++LD++   K  DF
Sbjct: 93  FFHLSRERVFTEERARFY---GAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDF 149

Query: 126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           GL K    +    T      TP   APE+       +  D +  G++++E++  R 
Sbjct: 150 GLCKEGISDGA--TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRL 203

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.3 bits (153), Expect = 1e-12
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 16/140 (11%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           F  L +         R           YLH      +++ D+KPE++L+D+  + +  DF
Sbjct: 129 FSHLRRIGRFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDF 185

Query: 126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR---- 181
           G AK        +       TP   APE+ +     +  D ++ G+L++E+         
Sbjct: 186 GFAKRVKGRTWTLCG-----TPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFA 240

Query: 182 ----NLEKEISEGQEWFPKW 197
                + ++I  G+  FP  
Sbjct: 241 DQPIQIYEKIVSGKVRFPSH 260

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 61.3 bits (148), Expect = 4e-12
 Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
             ++  +  +   +  E+     + + +     +  I+H D+KP ++++      K  DF
Sbjct: 99  RDIVHTEGPMTPKRAIEVIADACQALNFS---HQNGIIHRDVKPANIMISATNAVKVMDF 155

Query: 126 GLAKLYNREHTHITSTGRRR-TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           G+A+        +T T     T    +PE     SV  + DV+S G +L+EV+    
Sbjct: 156 GIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEP 212

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.6 bits (149), Expect = 4e-12
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADF 125
           F  + +K          +       + YLH+                 LDE+     +DF
Sbjct: 95  FDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDF 154

Query: 126 GLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           GL+K+ +      T+ G   TPG  APE+      ++  D +S G++ + ++    
Sbjct: 155 GLSKMEDPGSVLSTACG---TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYP 207

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 5e-12
 Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 1/119 (0%)

Query: 63  MGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKA 122
                     +  G      ++    + +  L     + ++H D+KP+++L++ N   K 
Sbjct: 83  CDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKL 142

Query: 123 ADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRR 181
           A+FGLA+ +       ++             L+     +   D++S G +  E+    R
Sbjct: 143 ANFGLARAFGIPVRCYSAEVVTL-WYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGR 200

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 6e-12
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR--TPG 148
           +  L+   R KI+H D+K  +VL+  +   K ADFGLA+ ++       +    R  T  
Sbjct: 127 LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 186

Query: 149 CEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRR 181
              PEL +         D++  G ++ E+  R  
Sbjct: 187 YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSP 220

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 1e-11
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 1/92 (1%)

Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE 150
           +  L    +  I++ DIK E++LLD N      DFGL+K +  + T              
Sbjct: 139 VLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMA 198

Query: 151 APELW-MPYSVTQKCDVFSFGMLLFEVVGRRR 181
              +        +  D +S G+L++E++    
Sbjct: 199 PDIVRGGDSGHDKAVDWWSLGVLMYELLTGAS 230

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 2e-11
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 9/129 (6%)

Query: 53  TETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESV 112
           T+ Y+           L K   LG  +++ +     KG+ Y+H      I+H D+KP ++
Sbjct: 96  TDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNL 152

Query: 113 LLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYS-VTQKCDVFSFGM 171
            ++E+   K  DFGLA+  + E T         T    APE+ + +   TQ  D++S G 
Sbjct: 153 AVNEDCELKILDFGLARQADSEMTGYVV-----TRWYRAPEVILNWMRYTQTVDIWSVGC 207

Query: 172 LLFEVVGRR 180
           ++ E++  +
Sbjct: 208 IMAEMITGK 216

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 58.4 bits (140), Expect = 5e-11
 Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 4/146 (2%)

Query: 37  RMIAADNFSNLVGSEDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIA-YLH 95
           + +   N   L     T+  +          L    ++   G       S    +   + 
Sbjct: 55  KELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIA 114

Query: 96  EECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELW 155
               ++++H D+KP+++L++     K ADFGLA+ +       T      T    AP++ 
Sbjct: 115 YCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTH--EIVTLWYRAPDVL 172

Query: 156 MPYS-VTQKCDVFSFGMLLFEVVGRR 180
           M     +   D++S G +  E+V   
Sbjct: 173 MGSKKYSTTIDIWSVGCIFAEMVNGT 198

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 13/156 (8%)

Query: 48  VGSEDTETYIKGFLAMGPFYLLCKKN--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHY 105
            G+E     +   L       L            +  +       I Y+H    +  +H 
Sbjct: 71  CGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHS---KNFIHR 127

Query: 106 DIKPESVL---LDENFFPKAADFGLAKLYNREHTH-----ITSTGRRRTPGCEAPELWMP 157
           D+KP++ L     +       DFGLAK Y    TH       +     T    +    + 
Sbjct: 128 DVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLG 187

Query: 158 YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISEGQEW 193
              +++ D+ S G +L          +   +  +  
Sbjct: 188 IEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQ 223

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 2e-09
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 9/131 (6%)

Query: 51  EDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPE 110
           E  + Y+   L       + K   L    ++ +     +G+ Y+H      I+H D+KP 
Sbjct: 94  EFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPS 150

Query: 111 SVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYS-VTQKCDVFSF 169
           ++ ++E+   K  DFGLA+     HT    TG   T    APE+ + +    Q  D++S 
Sbjct: 151 NLAVNEDCELKILDFGLAR-----HTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSV 205

Query: 170 GMLLFEVVGRR 180
           G ++ E++  R
Sbjct: 206 GCIMAELLTGR 216

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 2e-09
 Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 51  EDTETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPE 110
           E  + Y+   L       + +  +    ++  +      GI +LH       +H D+KP 
Sbjct: 93  EFQDVYLVMELMDANLCQVIQMEL-DHERMSYLLYQMLCGIKHLHSAGI---IHRDLKPS 148

Query: 111 SVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFG 170
           ++++  +   K  DFGLA+                T    APE+ +     +  D++S G
Sbjct: 149 NIVVKSDCTLKILDFGLARTAGTSFMMTPYVV---TRYYRAPEVILGMGYKENVDIWSVG 205

Query: 171 MLLFEVVGRR 180
            ++ E+V  +
Sbjct: 206 CIMGEMVRHK 215

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 91  IAYLHEECRQKIVHYDIKPESVLLDENFFP----KAADFGLAKLYNREHTHITSTGRRRT 146
           +  ++     +I H+D+KPE+++L +   P    K  DFGLA   +  +      G   T
Sbjct: 123 LNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFG---T 179

Query: 147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
           P   APE+     +  + D++S G++ + ++
Sbjct: 180 PEFVAPEIVNYEPLGLEADMWSIGVITYILL 210

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 52.5 bits (125), Expect = 5e-09
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 79  QLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD-ENFFPKAADFGLAKLYNREHTH 137
            +R       K + Y H      I+H D+KP +V++D E+   +  D+GLA+ Y+    +
Sbjct: 130 DIRFYMYEILKALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEY 186

Query: 138 ITSTGRRRTPGCEAPELWMPYS-VTQKCDVFSFGMLLFEVVGRRR 181
                   +   + PEL + Y       D++S G +L  ++ R+ 
Sbjct: 187 NVRVA---SRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKE 228

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.0 bits (118), Expect = 4e-08
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 3/113 (2%)

Query: 66  FYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD-ENFFPKAAD 124
                +   +    +++I      G+ Y+H   R  I+H DIKPE+VL++  +       
Sbjct: 113 LIKKYEHRGIPLIYVKQISKQLLLGLDYMH--RRCGIIHTDIKPENVLMEIVDSPENLIQ 170

Query: 125 FGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVV 177
             +A L N        T   +T    +PE+ +        D++S   L+FE++
Sbjct: 171 IKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELI 223

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 42.8 bits (100), Expect = 5e-06
 Identities = 19/128 (14%), Positives = 37/128 (28%), Gaps = 10/128 (7%)

Query: 13  ITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNL-----VGSEDTETYIKGFLAMGPFY 67
           +  T  K +        + F+      A + F  L     +       +    + M    
Sbjct: 34  VGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWEGNAVLM-ELI 92

Query: 68  LLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGL 127
              +   +      E+     + +A  +      IVH D+   +VL+ E       DF  
Sbjct: 93  DAKELYRVRVENPDEVLDMILEEVAKFYHRG---IVHGDLSQYNVLVSE-EGIWIIDFPQ 148

Query: 128 AKLYNREH 135
           +     E 
Sbjct: 149 SVEVGEEG 156

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.98
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.98
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.95
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.56
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	96.76
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	95.14
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	92.57
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	87.88
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	87.22

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-42  Score=265.42  Aligned_cols=184  Identities=22%  Similarity=0.246  Sum_probs=151.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||+|+++.+++.||.|+......  .+...++..|..+....+|+|++.      ..+..+++++++++|+|..++.. .
T Consensus        21 V~~~~~~~~~~~vAiK~i~~~~~--~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~l~~~~   98 (271)
T d1nvra_          21 VQLAVNRVTEEAVAVKIVDMKRA--VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI   98 (271)
T ss_dssp             EEEEEETTTCCEEEEEEEECC---------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSBTTT
T ss_pred             EEEEEECCCCCEEEEEEEehhhc--chHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEeccCCCcHHHHHhcCC
Confidence            78999999999999887543321  223346778888889999999874      44456689999999999988865 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.+++.++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+|+...............||+.|+|||
T Consensus        99 ~l~e~~~~~i~~qi~~al~ylH~---~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE  175 (271)
T d1nvra_          99 GMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPE  175 (271)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---cCCccCcccHHHEEECCCCCEEEccchhheeeccCCccccccceeeCcCccCHh
Confidence            69999999999999999999999   999999999999999999999999999999765544433445678999999999


Q ss_pred             ccCCCCC-CchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          154 LWMPYSV-TQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       154 ~~~~~~~-~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      ++.+..+ +.++||||+||++|||++|++||......
T Consensus       176 ~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~  212 (271)
T d1nvra_         176 LLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDS  212 (271)
T ss_dssp             HHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTT
T ss_pred             HhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChH
Confidence            9988776 56799999999999999999999765543

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-42  Score=268.01  Aligned_cols=185  Identities=18%  Similarity=0.275  Sum_probs=152.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||+|+++.+++.||.|+..............+..|..+....+|+|++.      .....+++++++++|+|..++. .+
T Consensus        24 Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~~~~~~  103 (288)
T d1uu3a_          24 VVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIG  103 (288)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHHS
T ss_pred             EEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEEEccCCCCHHHhhhccC
Confidence            7999999989999988765544444445566788888888899999874      3445578899999999988764 56


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..++.++.|++.||.|||+   ++|+||||||+||+++.++.+||+|||+|+...............||+.|+|||
T Consensus       104 ~l~e~~~~~~~~qi~~al~ylH~---~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE  180 (288)
T d1uu3a_         104 SFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPE  180 (288)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECC----------CCCCGGGCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhcc---ccEEcCcCCccccccCCCceEEecccccceecccCCcccccccccCCccccCce
Confidence            79999999999999999999999   999999999999999999999999999999775444333344567899999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..++.++||||+||++|||++|+.||...+.
T Consensus       181 ~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~  215 (288)
T d1uu3a_         181 LLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE  215 (288)
T ss_dssp             HHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             eeccCCCCcccceehhhHHHHHHhhCCCCCCCcCH
Confidence            99999999999999999999999999999986544

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-41  Score=264.71  Aligned_cols=180  Identities=18%  Similarity=0.246  Sum_probs=154.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccCC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKNI   74 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (202)
                      ||+|+++.+++.||.|+.+...   ......+..|..+....+|+|++.      ..+..+++++++++|+|..+...+.
T Consensus        36 Vy~a~~~~~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~~~~~~  112 (293)
T d1yhwa1          36 VYTAMDVATGQEVAIRQMNLQQ---QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETC  112 (293)
T ss_dssp             EEEEEBTTTCCEEEEEEEEGGG---CSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHSC
T ss_pred             EEEEEECCCCCEEEEEEEeccc---ChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEecCCCcHHHHhhccC
Confidence            7999999989999988754332   223345778888888999999874      3455678999999999999998889


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCcc
Q 044746           75 LGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPEL  154 (202)
Q Consensus        75 ~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe~  154 (202)
                      +++.+++.++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+++.......  ......||+.|+|||+
T Consensus       113 l~~~~~~~i~~qi~~aL~yLH~---~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~--~~~~~~gt~~Y~aPE~  187 (293)
T d1yhwa1         113 MDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEV  187 (293)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC--CBCCCCSCGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---CCCcccCCcHHHeEECCCCcEeeccchhheeeccccc--cccccccCCCccChhh
Confidence            9999999999999999999999   9999999999999999999999999999987644322  2344578999999999


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          155 WMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       155 ~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +.+..++.++||||+||++|||++|++||.+...
T Consensus       188 ~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~  221 (293)
T d1yhwa1         188 VTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP  221 (293)
T ss_dssp             HSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred             hcCCCCCchhceehHhHHHHHHhhCCCCCCCCCH
Confidence            9999999999999999999999999999976554

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-41  Score=263.67  Aligned_cols=182  Identities=18%  Similarity=0.224  Sum_probs=154.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||+|+++.+++.||.|+..............+..|..+....+|||++.      ..+..+++++++++|+|..++.. .
T Consensus        22 Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivmEy~~~g~L~~~l~~~~  101 (263)
T d2j4za1          22 VYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLS  101 (263)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHS
T ss_pred             EEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHhhcC
Confidence            7899999999999988765544444444556777888888999999874      44456689999999999888754 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.++..++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+|+......    .....||+.|+|||
T Consensus       102 ~l~e~~~~~i~~qi~~al~~lH~---~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~----~~~~~Gt~~Y~APE  174 (263)
T d2j4za1         102 KFDEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR----RTTLCGTLDYLPPE  174 (263)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCC----CEETTEEGGGCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---CCeeeeeeccccceecCCCCEeecccceeeecCCCc----ccccCCCCcccCHH
Confidence            79999999999999999999999   999999999999999999999999999998654332    23356899999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      ++.+..++.++||||+||++|||++|++||.+.+..
T Consensus       175 ~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~  210 (263)
T d2j4za1         175 MIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQ  210 (263)
T ss_dssp             HHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHH
T ss_pred             HHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHH
Confidence            999999999999999999999999999999876543

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-40  Score=262.24  Aligned_cols=180  Identities=21%  Similarity=0.303  Sum_probs=154.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||+|+++.+++.||.|+.+............+..|..+....+|||++.      ..+..+++++++++|++..+... .
T Consensus        20 Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~l~~~~~~~~   99 (316)
T d1fota_          20 VHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQ   99 (316)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHTS
T ss_pred             EEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEeeecCCccccccccccc
Confidence            7999999999999988865544444455566888888899999999874      44556788999999998877754 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..++.++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+|+.....     .....||+.|+|||
T Consensus       100 ~~~~~~~~~~~~qi~~al~~lH~---~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~-----~~~~~Gt~~Y~APE  171 (316)
T d1fota_         100 RFPNPVAKFYAAEVCLALEYLHS---KDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV-----TYTLCGTPDYIAPE  171 (316)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC-----BCCCCSCTTTCCHH
T ss_pred             cccccHHHHHHHHHHHhhhhhcc---CcEEccccCchheeEcCCCCEEEecCccceEeccc-----cccccCcccccCHH
Confidence            58999999999999999999999   99999999999999999999999999999876432     23457899999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..++.++||||+||++|||++|+.||.+.+.
T Consensus       172 ~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~  206 (316)
T d1fota_         172 VVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT  206 (316)
T ss_dssp             HHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH
T ss_pred             HHcCCCCCchhhccccchhHHHHHhCCCCCCCcCH
Confidence            99999999999999999999999999999987654

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-40  Score=264.34  Aligned_cols=184  Identities=20%  Similarity=0.287  Sum_probs=155.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||+++++.+++.||.|+.+............+..|..++...+|++++.      .....+++++++++|+|..++.. +
T Consensus        21 V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~ey~~gg~L~~~~~~~~  100 (337)
T d1o6la_          21 VILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRER  100 (337)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHS
T ss_pred             EEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccceeccCCCchhhhhhccc
Confidence            7899999999999988765544444444556777888888899998874      44556789999999999888765 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..++.++.|++.||+|||+   ++|+||||||+|||++.+|.+||+|||+|+.......  .....+||+.|+|||
T Consensus       101 ~~~e~~~~~~~~qil~al~ylH~---~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~--~~~~~~GT~~Y~aPE  175 (337)
T d1o6la_         101 VFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA--TMKTFCGTPEYLAPE  175 (337)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTC--CBCCCEECGGGCCGG
T ss_pred             CCcHHHHHHHHHHHhhhhhhhhh---cCccccccCHHHeEecCCCCEEEeecccccccccCCc--ccccceeCHHHhhhh
Confidence            69999999999999999999999   9999999999999999999999999999986533222  234467899999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      ++.+..++.++|+||+||++|||++|++||.+.+..
T Consensus       176 ~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~  211 (337)
T d1o6la_         176 VLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE  211 (337)
T ss_dssp             GGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             hccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHH
Confidence            999999999999999999999999999999876543

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-40  Score=258.10  Aligned_cols=181  Identities=22%  Similarity=0.254  Sum_probs=150.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc--c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK--K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~--~   72 (202)
                      ||+++++.+++.||+|+.+..   ..+....+..|..+....+|+|++.      ..+..+++++++++|+|..++.  .
T Consensus        28 Vy~~~~~~~~~~vAvK~i~~~---~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~~~g~L~~~~~~~~  104 (288)
T d2jfla1          28 VYKAQNKETSVLAAAKVIDTK---SEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELE  104 (288)
T ss_dssp             EEEEEETTTCCEEEEEEEECS---SSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHHT
T ss_pred             EEEEEECCCCeEEEEEEECcC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecCCCCcHHHHHHhcC
Confidence            799999999999998875432   2233456788888889999999874      3445568999999999988763  3


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++.++..++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+|+.......  ......||+.|+||
T Consensus       105 ~~l~e~~~~~i~~qi~~gL~ylH~---~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~--~~~~~~Gt~~y~AP  179 (288)
T d2jfla1         105 RPLTESQIQVVCKQTLDALNYLHD---NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ--RRDSFIGTPYWMAP  179 (288)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHH--HHTCCCSCCTTCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCEEEeecChhheeECCCCCEEEEechhhhccCCCcc--cccccccccccCCH
Confidence            569999999999999999999999   9999999999999999999999999999986543221  22346789999999


Q ss_pred             cccC-----CCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          153 ELWM-----PYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       153 e~~~-----~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |++.     ...++.++||||+||++|||++|++||.+..+.
T Consensus       180 E~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~  221 (288)
T d2jfla1         180 EVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPM  221 (288)
T ss_dssp             HHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGG
T ss_pred             HHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHH
Confidence            9984     456889999999999999999999999876543

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-40  Score=258.73  Aligned_cols=181  Identities=19%  Similarity=0.262  Sum_probs=139.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhcc--C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKK--N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~--~   73 (202)
                      ||+++..+   -||+|+.+... ........|..|..+....+|+|++.     ..+...++++++++|+|..++..  .
T Consensus        24 Vy~~~~~~---~vAvK~~~~~~-~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~   99 (276)
T d1uwha_          24 VYKGKWHG---DVAVKMLNVTA-PTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCEGSSLYHHLHIIET   99 (276)
T ss_dssp             EEEEESSS---EEEEEECCCSS-CCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCCEEEHHHHHHTSCC
T ss_pred             EEEEEECC---EEEEEEEEccc-CCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEeccEEEEEEecCCCCCHHHHHhhccC
Confidence            67887654   26666543321 12233456778888889999999874     23345689999999999998843  4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+|+...............||+.|+|||
T Consensus       100 ~~~~~~~~~i~~qi~~gl~yLH~---~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE  176 (276)
T d1uwha_         100 KFEMIKLIDIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPE  176 (276)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTSSEEECCCCCSCC------------CCCCGGGCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhc---CCEeccccCHHHEEEcCCCCEEEccccceeeccccCCcccccccccCcccCCHH
Confidence            59999999999999999999999   999999999999999999999999999998765443333445567899999999


Q ss_pred             ccCC---CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMP---YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~---~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+   ..++.++|||||||++|||+||+.||.+..+
T Consensus       177 ~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~  214 (276)
T d1uwha_         177 VIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINN  214 (276)
T ss_dssp             HHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC
T ss_pred             HHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCCh
Confidence            9864   3589999999999999999999999986544

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-40  Score=258.09  Aligned_cols=186  Identities=19%  Similarity=0.240  Sum_probs=138.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc--------cccceEEEEEccCCchhhhhc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS--------EDTETYIKGFLAMGPFYLLCK-   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~l~~~~~-   71 (202)
                      ||+++++.+++.||.|+....... ......+..|..+....+|||++..        .+..+++++++++|+|..++. 
T Consensus        20 Vy~~~~~~~~~~vAvK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~ivmEy~~~g~L~~~i~~   98 (269)
T d2java1          20 CQKIRRKSDGKILVWKELDYGSMT-EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITK   98 (269)
T ss_dssp             EEEEEETTTCCEEEEEEECCTTSC-HHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEEEECCTTEEHHHHHHH
T ss_pred             EEEEEECCCCCEEEEEEEChhhCC-HHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEEEecCCCCcHHHHHHh
Confidence            799999998988888864333211 1123456677777888899998742        233467899999999998874 


Q ss_pred             ----cCCCCHHHHHHHHHHHHHHHHHHHhCC--CCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCC
Q 044746           72 ----KNILGFGQLREIEVSTSKGIAYLHEEC--RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRR  145 (202)
Q Consensus        72 ----~~~~~~~~~~~~~~~i~~~l~~lH~~~--~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~g  145 (202)
                          ...+++..+..++.|++.||.|||+..  ..+|+||||||+|||++.++.+||+|||+++.......  ......|
T Consensus        99 ~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~--~~~~~~g  176 (269)
T d2java1          99 GTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTS--FAKAFVG  176 (269)
T ss_dssp             HHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHHC-------------C
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeecccCCC--ccccCCC
Confidence                356999999999999999999999810  12499999999999999999999999999987654322  2234678


Q ss_pred             CCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          146 TPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       146 t~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |+.|+|||++.+..++.++||||+||++|||+||++||...+..
T Consensus       177 t~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~  220 (269)
T d2java1         177 TPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK  220 (269)
T ss_dssp             CCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             CcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHH
Confidence            99999999999999999999999999999999999999865543

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-40  Score=264.59  Aligned_cols=180  Identities=19%  Similarity=0.232  Sum_probs=148.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||+++++.+++.||.|+.+...  ......++..|..++...+|||++.      ..+..+++++++++|+|..++. .+
T Consensus        22 V~~~~~~~~~~~vAiK~i~~~~--~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmEy~~gg~L~~~l~~~~   99 (322)
T d1s9ja_          22 VFKVSHKPSGLVMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAG   99 (322)
T ss_dssp             EEEEEETTTTEEEEEEEEECCC--CTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHHHHS
T ss_pred             EEEEEECCCCcEEEEEEEChhh--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHhhcC
Confidence            7999999999999988754321  1122345667777888889999874      4445678999999999998875 45


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..++.++.|++.||.|||+.  ++|+||||||+|||++.++.+||+|||+|+......    .....||+.|+|||
T Consensus       100 ~l~~~~~~~~~~qil~aL~yLH~~--~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~----~~~~~GT~~Y~APE  173 (322)
T d1s9ja_         100 RIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSPE  173 (322)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHT----C---CCSSCCCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHh--CCEEccccCHHHeeECCCCCEEEeeCCCccccCCCc----cccccCCccccCch
Confidence            799999999999999999999971  489999999999999999999999999998654322    23457899999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..++.++||||+||+++||++|+.||.+...
T Consensus       174 vl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~  208 (322)
T d1s9ja_         174 RLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDA  208 (322)
T ss_dssp             HHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCT
T ss_pred             HHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCH
Confidence            99999999999999999999999999999986543

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-39  Score=261.55  Aligned_cols=180  Identities=19%  Similarity=0.294  Sum_probs=152.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||+|+++.+++.||.|+..............+..|..++...+|++++.      ......++++++.+|+|..++.. +
T Consensus        57 Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~l~~~~  136 (350)
T d1rdqe_          57 VMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG  136 (350)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHC
T ss_pred             EEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccccccccccccccccchhhhHhhcC
Confidence            7999999989999988755443344444556777888888899999874      33445688999999998877754 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..++.++.|++.||.|||+   ++||||||||+|||++.++.+||+|||+|+.....     .....||+.|+|||
T Consensus       137 ~l~e~~~~~i~~qi~~aL~yLH~---~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~-----~~~~~Gt~~Y~APE  208 (350)
T d1rdqe_         137 RFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR-----TWTLCGTPEALAPE  208 (350)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC-----BCCCEECGGGCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCEecCcCCHHHcccCCCCCEEeeeceeeeecccc-----cccccCccccCCHH
Confidence            79999999999999999999999   99999999999999999999999999999876432     23457899999999


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+..++.++||||+||++|||+||++||.+...
T Consensus       209 ~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~  243 (350)
T d1rdqe_         209 IILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP  243 (350)
T ss_dssp             HHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             HHcCCCCCccccccchhHHHHHHHhCCCCCCCcCH
Confidence            99999999999999999999999999999986544

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.6e-40  Score=258.67  Aligned_cols=179  Identities=22%  Similarity=0.249  Sum_probs=148.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh-ccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC-KKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~-~~~   73 (202)
                      ||+|++..+++.||.|+.........+....+..|..+....+|+|++.      ..+..+++++++.+|++..+. ...
T Consensus        31 Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~~~~~~  110 (309)
T d1u5ra_          31 VYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKK  110 (309)
T ss_dssp             EEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHHTS
T ss_pred             EEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEEecCCCchHHHHHhCC
Confidence            7999999999999988754433222333445777888888999999874      344566899999999887654 456


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++.++..++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+++....      .....||+.|+|||
T Consensus       111 ~l~e~~~~~i~~qi~~aL~yLH~---~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~------~~~~~GT~~Y~APE  181 (309)
T d1u5ra_         111 PLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP------ANSFVGTPYWMAPE  181 (309)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS------BCCCCSCGGGCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---CCEeccCCCcceEEECCCCCEEEeecccccccCC------CCccccCccccCHH
Confidence            79999999999999999999999   9999999999999999999999999999986432      23356899999999


Q ss_pred             ccCC---CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMP---YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~---~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ++.+   ..|+.++||||+||++|||++|++||.+...
T Consensus       182 ~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~  219 (309)
T d1u5ra_         182 VILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA  219 (309)
T ss_dssp             HHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred             HHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCH
Confidence            9864   4589999999999999999999999976544

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.2e-39  Score=254.92  Aligned_cols=180  Identities=19%  Similarity=0.249  Sum_probs=136.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||+|+++.+++.||.|+.......  .....+..|..+....+|||++.      ..+..+++++++++|+|..++. .+
T Consensus        25 Vy~~~~~~~~~~vAvK~i~~~~~~--~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE~~~gg~L~~~l~~~~  102 (307)
T d1a06a_          25 VILAEDKRTQKLVAIKCIAKKALE--GKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKG  102 (307)
T ss_dssp             EEEEEETTTCCEEEEEEEEC------------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTCS
T ss_pred             EEEEEECCCCCEEEEEEEchHHhh--hHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHhhhccc
Confidence            799999999999998875433222  22345778888889999999874      4455678999999999988875 45


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc---CCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD---ENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~---~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      .+++.++..++.|++.||.|||+   ++|+||||||+||++.   .++.+||+|||+++.......   .....||+.|+
T Consensus       103 ~l~e~~~~~~~~qi~~al~ylH~---~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~---~~~~~GT~~y~  176 (307)
T d1a06a_         103 FYTERDASRLIFQVLDAVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSV---LSTACGTPGYV  176 (307)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSTTCCEEECCC---------------------CTTS
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhh---ceeeeEEecccceeecccCCCceEEEeccceeEEccCCCe---eeeeeeCcccc
Confidence            79999999999999999999999   9999999999999995   478999999999986543322   23456899999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |||++.+..++.++||||+||++|||++|++||.+...
T Consensus       177 APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~  214 (307)
T d1a06a_         177 APEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDEND  214 (307)
T ss_dssp             CHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             CcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCH
Confidence            99999999999999999999999999999999986543

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-39  Score=251.64  Aligned_cols=178  Identities=20%  Similarity=0.290  Sum_probs=144.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc----------ccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE----------DTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----------~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||++++..+++.||.|........ .....+|..|..+....+|+|++...          ...+++++++++|+|..++
T Consensus        25 Vy~~~~~~~~~~va~K~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivmE~~~~g~L~~~l  103 (270)
T d1t4ha_          25 VYKGLDTETTVEVAWCELQDRKLT-KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYL  103 (270)
T ss_dssp             EEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHH
T ss_pred             EEEEEECCCCeEEEEEEEchhhCC-HHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEEeCCCCCcHHHHH
Confidence            799999998888887764333211 12234577888888899999988532          2245789999999998887


Q ss_pred             cc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEecCCCCcEEEc-CCCceEEeeeecceeccccCcccccCCCCCC
Q 044746           71 KK-NILGFGQLREIEVSTSKGIAYLHEECRQK--IVHYDIKPESVLLD-ENFFPKAADFGLAKLYNREHTHITSTGRRRT  146 (202)
Q Consensus        71 ~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~--iiHrdlk~~nil~~-~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt  146 (202)
                      .. ..+++.+++.++.|++.||+|||+   ++  |+||||||+|||++ .++.+||+|||+++......    .....||
T Consensus       104 ~~~~~~~~~~~~~~~~qi~~gl~yLH~---~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~~----~~~~~GT  176 (270)
T d1t4ha_         104 KRFKVMKIKVLRSWCRQILKGLQFLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASF----AKAVIGT  176 (270)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHHHT---SSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTS----BEESCSS
T ss_pred             hccccccHHHHHHHHHHHHHHHHHHHH---CCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccCCc----cCCcccC
Confidence            54 579999999999999999999998   77  99999999999996 47899999999997543322    2345789


Q ss_pred             CcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       147 ~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +.|+|||++.+ .++.++||||+||++|||++|+.||....
T Consensus       177 ~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~  216 (270)
T d1t4ha_         177 PEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQ  216 (270)
T ss_dssp             CCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCS
T ss_pred             ccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCcc
Confidence            99999999876 59999999999999999999999997544

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-39  Score=256.45  Aligned_cols=184  Identities=21%  Similarity=0.273  Sum_probs=143.6

Q ss_pred             CCccccCCCcc-----eeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTR-----FITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~   68 (202)
                      ||+|++.+.++     .||+|.....  ........+..|....... +|+|++.      ..+...++++++++|+|..
T Consensus        53 Vy~a~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~Ey~~~g~L~~  130 (325)
T d1rjba_          53 VMNATAYGISKTGVSIQVAVKMLKEK--ADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLN  130 (325)
T ss_dssp             EEEEEEESCSSSSCEEEEEEEEECC--------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHH
T ss_pred             EEEEEEcCCCcccceeEEEEEEeccc--cCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCeEEEEEEcCCCCcHHH
Confidence            67887755443     4565543322  2223334566666666554 8999874      4455679999999999999


Q ss_pred             hhccC------------------------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEee
Q 044746           69 LCKKN------------------------ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAAD  124 (202)
Q Consensus        69 ~~~~~------------------------~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~d  124 (202)
                      ++...                        .+++.+++.++.|++.||.|||+   ++|+||||||+||+++.++.+||+|
T Consensus       131 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~---~~IiHRDlKp~Nill~~~~~~Kl~D  207 (325)
T d1rjba_         131 YLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---KSCVHRDLAARNVLVTHGKVVKICD  207 (325)
T ss_dssp             HHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH---TTEEETTCSGGGEEEETTTEEEECC
T ss_pred             HHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCchhccccccCCeEEEee
Confidence            88542                        48999999999999999999999   9999999999999999999999999


Q ss_pred             eecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhcc
Q 044746          125 FGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEISE  189 (202)
Q Consensus       125 fgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~~  189 (202)
                      ||+|+...............||+.|+|||++.+..++.++|||||||++|||+| |++||.+...+
T Consensus       208 FGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~  273 (325)
T d1rjba_         208 FGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVD  273 (325)
T ss_dssp             CGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS
T ss_pred             ccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCHH
Confidence            999987655444434445667999999999999999999999999999999998 89999865543

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-38  Score=253.24  Aligned_cols=184  Identities=20%  Similarity=0.248  Sum_probs=151.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHH-HHhcccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRM-IAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||+|++..+++.||.|+.+.......+....+..|... ....+||+++.      .++..+++++++++|+|..++.. 
T Consensus        18 Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yivmEy~~~g~L~~~i~~~   97 (320)
T d1xjda_          18 VFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC   97 (320)
T ss_dssp             EEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH
T ss_pred             EEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEEEeecCCCcHHHHhhcc
Confidence            79999999999999888654433333333344444443 45689998873      55667799999999999988854 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++.+++.++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+++.......  ......||+.|+||
T Consensus        98 ~~~~e~~~~~~~~qi~~al~ylH~---~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~--~~~~~~gt~~y~aP  172 (320)
T d1xjda_          98 HKFDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDA--KTNTFCGTPDYIAP  172 (320)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC--CBCCCCSCGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCcccceeecCCCceeccccchhhhcccccc--cccccCCCCCcCCH
Confidence            569999999999999999999999   9999999999999999999999999999986543322  23445789999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |++.+..++.++||||+||++|||++|+.||.+.+..
T Consensus       173 E~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~  209 (320)
T d1xjda_         173 EILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEE  209 (320)
T ss_dssp             HHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             HHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHH
Confidence            9999999999999999999999999999999875543

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-38  Score=257.12  Aligned_cols=182  Identities=17%  Similarity=0.262  Sum_probs=145.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcH---HHHHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSP---QRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||+|++..+++.||.|+..............+..+   ..+....+||+++.      ..+..+++++++++|+|..++.
T Consensus        20 Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~ivmE~~~gg~L~~~l~   99 (364)
T d1omwa3          20 VYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLS   99 (364)
T ss_dssp             EEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH
T ss_pred             EEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEEEEEEecCCCcHHHHHH
Confidence            79999999999999887543322222222223333   33345567888874      4455678999999999998875


Q ss_pred             -cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           72 -KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        72 -~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                       ...+++.++..++.||+.||.|||+   ++|+||||||+|||++.++.+||+|||+|+......    .....||+.|+
T Consensus       100 ~~~~~~e~~~~~~~~qi~~aL~ylH~---~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~~----~~~~~GT~~y~  172 (364)
T d1omwa3         100 QHGVFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASVGTHGYM  172 (364)
T ss_dssp             HHCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECSSSCEEECCCTTCEECSSSC----CCSCCSCGGGC
T ss_pred             hcccccHHHHHHHHHHHHHHHHHHHH---CCccceeeccceeEEcCCCcEEEeeeceeeecCCCc----ccccccccccc
Confidence             4568999999999999999999999   999999999999999999999999999998765432    23457899999


Q ss_pred             CCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          151 APELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       151 aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |||++.. ..++.++||||+||++|||+||++||......
T Consensus       173 APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~  212 (364)
T d1omwa3         173 APEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK  212 (364)
T ss_dssp             CHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSS
T ss_pred             hhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHH
Confidence            9999874 56899999999999999999999999865443

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.1e-39  Score=250.90  Aligned_cols=186  Identities=18%  Similarity=0.222  Sum_probs=146.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc----------ccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE----------DTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----------~~~~~~~~~~~~~~l~~~~   70 (202)
                      ||+|++..+++.||.|+.+.......+...+|..|.......+|+|++...          ...+++++++++++|..++
T Consensus        23 Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~~lvmE~~~g~~L~~~~  102 (277)
T d1o6ya_          23 VHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIV  102 (277)
T ss_dssp             EEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEEEEEEECCCEEEHHHHH
T ss_pred             EEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceEEEEEECCCCCEehhhh
Confidence            799999999999998876543333333345678888888999999987422          2346899999999998776


Q ss_pred             c-cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc-ccccCCCCCCCc
Q 044746           71 K-KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT-HITSTGRRRTPG  148 (202)
Q Consensus        71 ~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~gt~~  148 (202)
                      . .+.+++.+++.++.|++.||.|||+   ++|+||||||+||+++.++..+++|||.+........ ........||+.
T Consensus       103 ~~~~~l~~~~~~~i~~qi~~al~~lH~---~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~  179 (277)
T d1o6ya_         103 HTEGPMTPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQ  179 (277)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTSCEEECCCTTCEECC----------------T
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHh---CCccCccccCcccccCccccceeehhhhhhhhccccccccccccccCccc
Confidence            4 4579999999999999999999999   9999999999999999999999999999876543222 222344678999


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |+|||++.+..++.++||||+||++|||+||++||....+.
T Consensus       180 Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~  220 (277)
T d1o6ya_         180 YLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPV  220 (277)
T ss_dssp             TCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             ccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHH
Confidence            99999999999999999999999999999999999876543

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.9e-39  Score=252.58  Aligned_cols=184  Identities=20%  Similarity=0.316  Sum_probs=134.3

Q ss_pred             CCccccCCCcc---eeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTR---FITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||+++++.+++   .||+|....  ........+|..|..++...+|+|++.      ..+...++++++++|+|..++.
T Consensus        42 Vy~~~~~~~~~~~~~vavK~~~~--~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~  119 (299)
T d1jpaa_          42 VCSGHLKLPGKREIFVAIKTLKS--GYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLR  119 (299)
T ss_dssp             EEEEEECC---CCEEEEEEECCS--SCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHH
T ss_pred             EEEEEEeCCCCEEEEEEEEEECc--ccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEecCCCcceeeec
Confidence            78888765543   344443222  111222345778888888999999874      3455678999999999988775


Q ss_pred             c--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc---ccCCCCCC
Q 044746           72 K--NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI---TSTGRRRT  146 (202)
Q Consensus        72 ~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~---~~~~~~gt  146 (202)
                      .  +.+++.++..++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+++.........   ......||
T Consensus       120 ~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t  196 (299)
T d1jpaa_         120 QNDGQFTVIQLVGMLRGIAAGMKYLAD---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIP  196 (299)
T ss_dssp             TTTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC-----------------------C
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHhh---CCCccCccccceEEECCCCcEEECCcccceEccCCCCcceeeecccccCC
Confidence            5  359999999999999999999999   999999999999999999999999999998765432221   12234578


Q ss_pred             CcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhcc
Q 044746          147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEISE  189 (202)
Q Consensus       147 ~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~~  189 (202)
                      +.|+|||.+.+..++.++|||||||++|||+| |++||.+....
T Consensus       197 ~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~  240 (299)
T d1jpaa_         197 IRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQ  240 (299)
T ss_dssp             GGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH
T ss_pred             ccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHH
Confidence            99999999999999999999999999999998 89999865543

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=1.6e-38  Score=254.97  Aligned_cols=180  Identities=18%  Similarity=0.254  Sum_probs=148.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc--c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK--K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~--~   72 (202)
                      ||+|+++.+++.||.|+.......   ....+..|..++...+|+|++.      ..+..+++++++++|+|..++.  .
T Consensus        42 Vy~~~~~~~g~~vAvK~i~~~~~~---~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~l~~~~  118 (350)
T d1koaa2          42 VHRVTERATGNNFAAKFVMTPHES---DKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEH  118 (350)
T ss_dssp             EEEEEETTTTEEEEEEEECCCSHH---HHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTCTT
T ss_pred             EEEEEECCCCCEEEEEEEcccchh---hHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCCHHHHHHhhc
Confidence            799999988888888764332222   1235667888888889999874      4455668899999999988873  3


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc--CCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD--ENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~--~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      +.+++.++..++.||+.||.|||+   ++|+||||||+|||++  .++.+||+|||+++........   ....||+.|+
T Consensus       119 ~~l~e~~~~~i~~qi~~aL~ylH~---~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~---~~~~gT~~Y~  192 (350)
T d1koaa2         119 NKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV---KVTTGTAEFA  192 (350)
T ss_dssp             SCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCE---EEECSCTTTC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---cCCeeeeechhHeeeccCCCCeEEEeecchheeccccccc---ceecCccccc
Confidence            469999999999999999999999   9999999999999996  4678999999999876544332   2346799999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |||++.+..++.++||||+||++|||++|+.||.+.+..
T Consensus       193 aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~  231 (350)
T d1koaa2         193 APEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDD  231 (350)
T ss_dssp             CHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             CHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHH
Confidence            999999999999999999999999999999999866543

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=3e-38  Score=253.52  Aligned_cols=180  Identities=18%  Similarity=0.244  Sum_probs=148.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||+|+++.+++.||.|+.+.....   ....+..|..++...+|+|++.      ..+..+++++++++|+|...+..  
T Consensus        45 V~~a~~~~~~~~vAiK~i~~~~~~---~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~~~~~~  121 (352)
T d1koba_          45 VHRCVEKATGRVFVAKFINTPYPL---DKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAED  121 (352)
T ss_dssp             EEEEEETTTCCEEEEEEEECCSHH---HHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCTT
T ss_pred             EEEEEECCCCCEEEEEEECCcchh---HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCChHHHHHHhcC
Confidence            799999998999998875432221   1234566777888889999874      34455689999999999876643  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEc--CCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLD--ENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~--~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                      ..+++.++..++.|++.||.|||+   ++|+||||||+|||++  .++.+||+|||+|+........   ....||+.|+
T Consensus       122 ~~l~e~~~~~i~~qi~~aL~ylH~---~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~---~~~~gt~~y~  195 (352)
T d1koba_         122 YKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIV---KVTTATAEFA  195 (352)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCE---EEECSSGGGC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccccccccccccCCCeEEEeecccceecCCCCce---eeccCccccc
Confidence            359999999999999999999999   9999999999999997  5789999999999876544332   2345699999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |||++.+..++.++||||+||++|||++|++||.+....
T Consensus       196 aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~  234 (352)
T d1koba_         196 APEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDL  234 (352)
T ss_dssp             CHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH
T ss_pred             CHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHH
Confidence            999999999999999999999999999999999875543

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-38  Score=248.90  Aligned_cols=178  Identities=21%  Similarity=0.260  Sum_probs=147.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||+|++..+++.||+|+.+..    .....+|..|..+....+|+|++.      .++...++++++++|+|..++..  
T Consensus        33 Vy~a~~~~~~~~vAvK~i~~~----~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~l~~~~  108 (287)
T d1opja_          33 VYEGVWKKYSLTVAVKTLKED----TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECN  108 (287)
T ss_dssp             EEEEEEGGGTEEEEEEECCTT----CSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSC
T ss_pred             EEEEEECCCCeEEEEEEECCc----cchHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEeecccCcchHHHhhhcc
Confidence            799999998998888764332    122345778888899999999874      34556789999999999888743  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                       ..+++..+..++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+++........ ......|++.|+|
T Consensus       109 ~~~~~~~~~~~i~~qi~~gL~yLH~---~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~-~~~~~~g~~~y~a  184 (287)
T d1opja_         109 RQEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT-AHAGAKFPIKWTA  184 (287)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSE-EETTEEECGGGCC
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHH---CCcccCccccCeEEECCCCcEEEccccceeecCCCCce-eeccccccccccC
Confidence             468999999999999999999999   99999999999999999999999999999876543322 2334457899999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      ||++.+..++.++|||||||++|||++|..||...
T Consensus       185 PE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~  219 (287)
T d1opja_         185 PESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG  219 (287)
T ss_dssp             HHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred             hHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCc
Confidence            99999899999999999999999999977665443

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-38  Score=248.37  Aligned_cols=183  Identities=18%  Similarity=0.274  Sum_probs=146.1

Q ss_pred             CCccccC--CCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhc--
Q 044746            1 MEKPRNR--GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCK--   71 (202)
Q Consensus         1 v~k~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~--   71 (202)
                      ||++..+  +.+..||+|+.+...  ......+|..|..+....+|+|++.     ..+...++++++++|+|..++.  
T Consensus        25 Vy~~~~~~~~~~~~vAvK~l~~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~~lvmE~~~~g~L~~~l~~~  102 (285)
T d1u59a_          25 VRQGVYRMRKKQIDVAIKVLKQGT--EKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGK  102 (285)
T ss_dssp             EEEEEEC---CCEEEEEEEECSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHHHTTC
T ss_pred             EEEEEEecCCCcEEEEEEEEChhc--CHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccCeEEEEEEeCCCCcHHHHhhcc
Confidence            6888554  444567776643221  1122346778888888999999874     2334568999999999998864  


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc-cccCCCCCCCccc
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-ITSTGRRRTPGCE  150 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~gt~~y~  150 (202)
                      +..+++.++..++.|++.||.|||+   ++|+||||||+||+++.++.+||+|||+++........ .......||+.|+
T Consensus       103 ~~~l~~~~~~~i~~qi~~gL~ylH~---~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~  179 (285)
T d1u59a_         103 REEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWY  179 (285)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCcCchhheeeccCCceeeccchhhhcccccccccccccccccCcccc
Confidence            3469999999999999999999999   99999999999999999999999999999976543322 2233456799999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      |||++....++.++|||||||++|||+| |++||.+...
T Consensus       180 aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~  218 (285)
T d1u59a_         180 APECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG  218 (285)
T ss_dssp             CHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT
T ss_pred             ChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCH
Confidence            9999998899999999999999999998 9999986543

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-38  Score=245.38  Aligned_cols=183  Identities=19%  Similarity=0.246  Sum_probs=150.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhcc---CCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEM---DKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||+|+++.+++.||.|+.+.......   .....+..|..++...+|+|++.      ..+..+++++++++|+|..++.
T Consensus        26 Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~gg~L~~~i~  105 (293)
T d1jksa_          26 VKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLA  105 (293)
T ss_dssp             EEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHH
T ss_pred             EEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCccccchhc
Confidence            79999999898888886543322211   12344667888888889999874      4455668999999999988875


Q ss_pred             c-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC----ceEEeeeecceeccccCcccccCCCCCC
Q 044746           72 K-NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF----FPKAADFGLAKLYNREHTHITSTGRRRT  146 (202)
Q Consensus        72 ~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~----~~kl~dfgl~~~~~~~~~~~~~~~~~gt  146 (202)
                      . +.+++..++.++.|++.||.|||+   ++|+||||||+||+++.++    .+|++|||+++.......   .....||
T Consensus       106 ~~~~l~~~~~~~~~~qi~~al~yLH~---~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~~---~~~~~~t  179 (293)
T d1jksa_         106 EKESLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNE---FKNIFGT  179 (293)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTSCB---CSCCCCC
T ss_pred             cccccchhHHHHHHHHHHHHHHhhhh---cceeecccccceEEEecCCCcccceEecchhhhhhcCCCcc---ccccCCC
Confidence            4 579999999999999999999999   9999999999999998766    599999999987654332   2345679


Q ss_pred             CcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       147 ~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      +.|+|||++.+..++.++||||+||++|||++|+.||.+....
T Consensus       180 ~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~  222 (293)
T d1jksa_         180 PEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ  222 (293)
T ss_dssp             GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             CcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHH
Confidence            9999999999989999999999999999999999999876543

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-38  Score=247.40  Aligned_cols=184  Identities=20%  Similarity=0.286  Sum_probs=144.8

Q ss_pred             CCcccc--CCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRN--RGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      |||+..  ...++.||.|+.+... .......+|..|..+....+|+|++.     ..+...++++++++|+|..++.. 
T Consensus        23 Vy~~~~~~~~~~~~vAvK~~~~~~-~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~~~~lvmE~~~~g~L~~~l~~~  101 (277)
T d1xbba_          23 VKKGYYQMKKVVKTVAVKILKNEA-NDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQN  101 (277)
T ss_dssp             EEEEEEECSSSEEEEEEEEEC------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHHHHHC
T ss_pred             EEEEEEccCCcCeEEEEEEEChhh-CCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccCCEEEEEEcCCCCcHHHHHhhc
Confidence            678864  3455678877653322 12222346788888888999999874     22334688999999999988865 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc-cccCCCCCCCcccC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-ITSTGRRRTPGCEA  151 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~gt~~y~a  151 (202)
                      ..+++.++..++.|++.||.|||+   ++|+||||||+|||++.++.+|++|||+++........ .......||+.|+|
T Consensus       102 ~~l~~~~~~~i~~qi~~gl~ylH~---~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~A  178 (277)
T d1xbba_         102 RHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYA  178 (277)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCC
T ss_pred             cCCCHHHHHHHHHHHHHHHhhHHh---CCcccCCCcchhhcccccCcccccchhhhhhccccccccccccccCCCceecC
Confidence            559999999999999999999999   99999999999999999999999999999876543322 22334568999999


Q ss_pred             CcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          152 PELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       152 Pe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ||.+.+..++.++|||||||++|||+| |++||.+...
T Consensus       179 PE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~  216 (277)
T d1xbba_         179 PECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG  216 (277)
T ss_dssp             HHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCH
T ss_pred             chhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCH
Confidence            999998899999999999999999998 8999986543

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-38  Score=242.78  Aligned_cols=177  Identities=20%  Similarity=0.298  Sum_probs=132.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK--   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~--   72 (202)
                      ||++++.++. .||+|..+..    .....+|..|.......+|+|++.      ..+...++++++++|+|..++..  
T Consensus        21 Vy~~~~~~~~-~vAvK~i~~~----~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g~L~~~l~~~~   95 (263)
T d1sm2a_          21 VHLGYWLNKD-KVAIKTIREG----AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQR   95 (263)
T ss_dssp             EEEEEETTTE-EEEEEECCSS----SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTT
T ss_pred             EEEEEECCCC-EEEEEEECCC----cCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecCCCcHHHHhhccc
Confidence            7888877554 4665543321    122345778888888999999874      34456689999999999998754  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+++........ ......||+.|+||
T Consensus        96 ~~~~~~~~~~i~~qia~gl~~lH~---~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aP  171 (263)
T d1sm2a_          96 GLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT-SSTGTKFPVKWASP  171 (263)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCTTCSGGGEEECGGGCEEECSCC-------------------CTTSCCH
T ss_pred             cCCCHHHHHHHHHHHHHHHHhhhc---cceeecccchhheeecCCCCeEecccchheeccCCCce-eecceecCcccCCh
Confidence            458999999999999999999999   99999999999999999999999999999876543322 22345679999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcC-CCCCcch
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGR-RRNLEKE  186 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g-~~p~~~~  186 (202)
                      |++.+..++.++|||||||++|||+|+ ++||...
T Consensus       172 E~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~  206 (263)
T d1sm2a_         172 EVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR  206 (263)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSC
T ss_pred             HHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCC
Confidence            999999999999999999999999995 6666543

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-38  Score=246.64  Aligned_cols=183  Identities=23%  Similarity=0.307  Sum_probs=146.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhcc--CCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEM--DKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-   71 (202)
                      ||+|+++.+++.||.|+.+.......  ....++..|..++...+|+|++.      ..+..+++++++.++.+..+.. 
T Consensus        14 Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~~~~~~~~~~~~   93 (299)
T d1ua2a_          14 VYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDN   93 (299)
T ss_dssp             EEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECCSEEHHHHHTTC
T ss_pred             EEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhhcchHHhhhhhc
Confidence            79999999999999887544332222  22345667888888899998873      4556678999999888776665 


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccC
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEA  151 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  151 (202)
                      ...+++.++..++.|++.||+|||+   ++|+||||||+|||++.++.+||+|||+++........  .....||+.|+|
T Consensus        94 ~~~l~~~~~~~~~~qil~aL~~lH~---~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~--~~~~~gt~~y~a  168 (299)
T d1ua2a_          94 SLVLTPSHIKAYMLMTLQGLEYLHQ---HWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRA--YTHQVVTRWYRA  168 (299)
T ss_dssp             CSSCCSSHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCC--CCCSCCCCTTCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHhhc---cceecccCCcceEEecCCCccccccCccccccCCCccc--ccceecChhhcc
Confidence            4469999999999999999999999   99999999999999999999999999999865443322  234568999999


Q ss_pred             CcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          152 PELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       152 Pe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ||++... .++.++||||+||++|||++|++||....+
T Consensus       169 PE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~  206 (299)
T d1ua2a_         169 PELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSD  206 (299)
T ss_dssp             HHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             HHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCH
Confidence            9998754 679999999999999999999999986554

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-37  Score=247.31  Aligned_cols=175  Identities=21%  Similarity=0.282  Sum_probs=143.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHH-HHhccccccccc----------cccceEEEEEccCCchhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRM-IAADNFSNLVGS----------EDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~----------~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||+|++..+++.||.|+.+...        .+..|..+ ....+|+|++..          ....+++++|+++|+|..+
T Consensus        28 Vy~a~~~~~~~~vAiK~i~~~~--------~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ivmEy~~gg~L~~~   99 (335)
T d2ozaa1          28 VLQIFNKRTQEKFALKMLQDCP--------KARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSR   99 (335)
T ss_dssp             EEEEEETTTCCEEEEEEEECSH--------HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHH
T ss_pred             EEEEEECCCCCEEEEEEECCcH--------HHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEEEECCCCCcHHHH
Confidence            7999999889999988754322        23334433 445688988742          2345789999999999998


Q ss_pred             hcc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC---CCceEEeeeecceeccccCcccccCCC
Q 044746           70 CKK---NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTHITSTGR  143 (202)
Q Consensus        70 ~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~---~~~~kl~dfgl~~~~~~~~~~~~~~~~  143 (202)
                      +..   ..+++.+++.++.|++.||.|||+   ++|+||||||+|||++.   .+.+||+|||+++.......   ....
T Consensus       100 i~~~~~~~l~e~~~~~i~~qi~~al~ylH~---~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~---~~~~  173 (335)
T d2ozaa1         100 IQDRGDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNS---LTTP  173 (335)
T ss_dssp             HHSCSCCCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCC---CCCC
T ss_pred             HHhcCCCCcCHHHHHHHHHHHHHHHHHHHH---cCCccccccccccccccccccccccccccceeeeccCCCc---cccc
Confidence            854   359999999999999999999999   99999999999999975   56799999999987654332   2445


Q ss_pred             CCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      .||+.|+|||++.+..++.++||||+||++|+|+||++||.+....
T Consensus       174 ~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~  219 (335)
T d2ozaa1         174 CYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL  219 (335)
T ss_dssp             SCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC
T ss_pred             cCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHH
Confidence            7899999999999989999999999999999999999999876543

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-37  Score=241.42  Aligned_cols=175  Identities=23%  Similarity=0.322  Sum_probs=140.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhccC--
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKKN--   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~~--   73 (202)
                      ||+++..++ ..||+|+.+..    ......|..|..+....+|+|++.     ..+...++++++++|+|..++...  
T Consensus        29 Vy~~~~~~~-~~vAvK~~~~~----~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~iv~Ey~~~g~L~~~~~~~~~  103 (272)
T d1qpca_          29 VWMGYYNGH-TKVAVKSLKQG----SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSG  103 (272)
T ss_dssp             EEEEEETTT-EEEEEEEECTT----SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHHHTTSHHH
T ss_pred             EEEEEECCC-CEEEEEEEccC----cCCHHHHHHHHHHHHhCCCCCEeEEEeeeccCCeEEEEEeCCCCcHHHHHhhcCC
Confidence            789987654 45665543322    122345778888888999999874     233456899999999998766433  


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                       .+++.++..++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+|+....... .......||+.|+||
T Consensus       104 ~~l~~~~~~~i~~qi~~gl~~lH~---~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~-~~~~~~~gt~~y~AP  179 (272)
T d1qpca_         104 IKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY-TAREGAKFPIKWTAP  179 (272)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE-ECCTTCCCCTTTSCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCccchhheeeecccceeeccccceEEccCCcc-ccccccCCcccccCh
Confidence             59999999999999999999999   9999999999999999999999999999997654332 223445679999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLE  184 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~  184 (202)
                      |++....++.++|||||||++|||+||..|+.
T Consensus       180 E~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~  211 (272)
T d1qpca_         180 EAINYGTFTIKSDVWSFGILLTEIVTHGRIPY  211 (272)
T ss_dssp             HHHHHCEECHHHHHHHHHHHHHHHHTTTCCSS
T ss_pred             HHHhCCCCCchhhhhhhHHHHHHHHhCCCCCC
Confidence            99998889999999999999999999655443

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-38  Score=248.22  Aligned_cols=184  Identities=20%  Similarity=0.251  Sum_probs=139.7

Q ss_pred             CCccccCCCccee----ehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFI----TRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||++++...++.+    |.|..+.  ........+|..|..+....+|+|++.     ..+...++++++.+++|...+.
T Consensus        25 Vy~~~~~~~~~~~~~~vavK~~~~--~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~v~e~~~~~~l~~~~~  102 (317)
T d1xkka_          25 VYKGLWIPEGEKVKIPVAIKELRE--ATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVR  102 (317)
T ss_dssp             EEEEEECC----CCEEEEEEEECC------CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTCBHHHHHH
T ss_pred             EEEEEEcCCCCEEEEEEEEEEecc--ccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeeEEEEeccCCccccccc
Confidence            7888887776643    3332211  122233456788888888999999874     2334557888999999877664


Q ss_pred             --cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           72 --KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        72 --~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                        ...+++..+..++.|++.||.|||+   ++|+||||||+||+++.++.+||+|||+++...............||+.|
T Consensus       103 ~~~~~~~~~~~~~i~~qi~~gl~yLH~---~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y  179 (317)
T d1xkka_         103 EHKDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKW  179 (317)
T ss_dssp             HTSSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC--------CCTTT
T ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHHH---cCcccCcchhhcceeCCCCCeEeeccccceecccccccccccccccCccc
Confidence              4469999999999999999999999   99999999999999999999999999999976554444444555689999


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhcc
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEISE  189 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~~  189 (202)
                      +|||++.+..++.++|||||||++|||+| |++||......
T Consensus       180 ~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~  220 (317)
T d1xkka_         180 MALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS  220 (317)
T ss_dssp             SCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGG
T ss_pred             cChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHH
Confidence            99999999999999999999999999998 89998765443

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=244.22  Aligned_cols=182  Identities=22%  Similarity=0.293  Sum_probs=131.3

Q ss_pred             CCccccCC-----CcceeehhhhchhhhhccCCcccCCcH-HHHHHhcccccccc-------ccccceEEEEEccCCchh
Q 044746            1 MEKPRNRG-----STRFITRTIDKSLDAMEMDKPIRFTSP-QRMIAADNFSNLVG-------SEDTETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~-------~~~~~~~~~~~~~~~~l~   67 (202)
                      ||+|++..     +.+.||+|+.+.....  .....+..+ ..+....+|++++.       ......++++++++|+|.
T Consensus        29 Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~--~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~~iv~E~~~~g~L~  106 (299)
T d1ywna1          29 VIEADAFGIDKTATCRTVAVKMLKEGATH--SEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLS  106 (299)
T ss_dssp             EEEEEEESTTSSSCEEEEEEEEC----CH--HHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEEEECCTTCBHH
T ss_pred             EEEEEEcCCCcccCCeEEEEEEEccccCc--HHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCCeEEEEEEecCCCcHH
Confidence            67776533     4456777664322111  112233334 33444456777653       233457889999999999


Q ss_pred             hhhcc-----------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746           68 LLCKK-----------------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus        68 ~~~~~-----------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      .++..                 ..+++.++..++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+|+.
T Consensus       107 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~---~~ivHrDlKp~NILl~~~~~~Kl~DFGla~~  183 (299)
T d1ywna1         107 TYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARD  183 (299)
T ss_dssp             HHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECGGGCEEECC------
T ss_pred             HHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHh---CCCcCCcCCccceeECCCCcEEEccCcchhh
Confidence            88742                 348999999999999999999999   9999999999999999999999999999987


Q ss_pred             ccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcC-CCCCcchh
Q 044746          131 YNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGR-RRNLEKEI  187 (202)
Q Consensus       131 ~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g-~~p~~~~~  187 (202)
                      ..............||+.|+|||++.+..++.++|||||||++|||++| .+||....
T Consensus       184 ~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~  241 (299)
T d1ywna1         184 IYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK  241 (299)
T ss_dssp             CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             ccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCC
Confidence            6544443344556789999999999999999999999999999999986 56776544

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-36  Score=243.58  Aligned_cols=183  Identities=21%  Similarity=0.300  Sum_probs=148.6

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc----------cceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED----------TETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------~~~~~~~~~~~~~l~~~~   70 (202)
                      ||+|++..+++.||+|+.+....  .....++..|..++...+|++++...+          ...++++++.+++|..++
T Consensus        24 Vy~~~~~~~~~~vAvK~i~~~~~--~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~l~~~~~~g~L~~~l  101 (345)
T d1pmea_          24 VCSAYDNVNKVRVAIKKISPFEH--QTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLL  101 (345)
T ss_dssp             EEEEEETTTCSEEEEEEECCTTC--HHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEECCCEEHHHHH
T ss_pred             EEEEEECCCCcEEEEEEEehhcC--hHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEEEEEeecCCchhhhh
Confidence            79999998999999886543221  112235667888888899998874221          124667788899999999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc-cccCCCCCCCcc
Q 044746           71 KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH-ITSTGRRRTPGC  149 (202)
Q Consensus        71 ~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~gt~~y  149 (202)
                      ..+.+++..++.++.|++.||+|||+   ++||||||||+|||++.++.+||+|||+++........ .......||+.|
T Consensus       102 ~~~~l~~~~i~~i~~qil~al~yLH~---~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y  178 (345)
T d1pmea_         102 KTQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWY  178 (345)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGG
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCcceEEECCCCCEEEcccCceeeccCCCccceeecccccccee
Confidence            88899999999999999999999999   99999999999999999999999999999876443222 223456789999


Q ss_pred             cCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          150 EAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       150 ~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +|||++.. ..++.++||||+||+++||++|++||.....
T Consensus       179 ~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~  218 (345)
T d1pmea_         179 RAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHY  218 (345)
T ss_dssp             CCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             chHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCH
Confidence            99999854 5678999999999999999999999986554

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-37  Score=238.63  Aligned_cols=183  Identities=19%  Similarity=0.219  Sum_probs=133.5

Q ss_pred             CCccccCCCc---ceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhc-
Q 044746            1 MEKPRNRGST---RFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCK-   71 (202)
Q Consensus         1 v~k~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~-   71 (202)
                      ||+|++...+   ..||.|..+..  ........|..|.......+|||++.     ..+...++++++++|++..+.. 
T Consensus        23 Vy~a~~~~~~~~~~~vaik~~~~~--~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~iv~E~~~~g~l~~~~~~  100 (273)
T d1mp8a_          23 VHQGIYMSPENPALAVAIKTCKNC--TSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQV  100 (273)
T ss_dssp             EEEEEECCC--CCEEEEEEECTTT--TSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEEEECCTTEEHHHHHHH
T ss_pred             EEEEEEecCCceeEEEEEEEeccc--cCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCeEEEEEEeccCCcHHhhhhc
Confidence            6888775543   23444433221  12222345778888888899999873     3345678999999999988754 


Q ss_pred             -cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           72 -KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        72 -~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                       ...+++..++.++.|++.||.|||+   ++++||||||+||+++.++.+||+|||+++........ ......||+.|+
T Consensus       101 ~~~~l~~~~~~~~~~qi~~gl~ylH~---~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~~-~~~~~~gt~~y~  176 (273)
T d1mp8a_         101 RKYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-KASKGKLPIKWM  176 (273)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECC--------------------CCGGGC
T ss_pred             cCCCCCHHHHHHHHHHHHHHhhhhcc---cCeeccccchhheeecCCCcEEEccchhheeccCCcce-eccceecCcccc
Confidence             3468999999999999999999999   99999999999999999999999999999875443222 223456799999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhcc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEISE  189 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~~  189 (202)
                      |||++....++.++|||||||++|||++ |.+||......
T Consensus       177 apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~  216 (273)
T d1mp8a_         177 APESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN  216 (273)
T ss_dssp             CHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG
T ss_pred             hhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHH
Confidence            9999998899999999999999999998 89999876554

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=2.1e-36  Score=235.45  Aligned_cols=183  Identities=17%  Similarity=0.221  Sum_probs=146.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhcc------CCcccCCcHHHHHHhcc-ccccc------cccccceEEEEEccCCchh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEM------DKPIRFTSPQRMIAADN-FSNLV------GSEDTETYIKGFLAMGPFY   67 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~i------~~~~~~~~~~~~~~~~~l~   67 (202)
                      ||++++..+++.+|.|+.+.......      ....++..|.......+ |+|++      ...+..+++++++++|+|.
T Consensus        19 V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~ivmE~~~~g~L~   98 (277)
T d1phka_          19 VRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELF   98 (277)
T ss_dssp             EEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHH
T ss_pred             EEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccCcceEEEEEcCCCchHH
Confidence            79999998999998887543322111      11223556666666654 88876      3455567999999999998


Q ss_pred             hhhc-cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCC
Q 044746           68 LLCK-KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRT  146 (202)
Q Consensus        68 ~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt  146 (202)
                      .++. .+.+++.+++.++.|++.||+|||+   ++|+||||||+||+++.++.+||+|||+++.......   .....||
T Consensus        99 ~~l~~~~~l~e~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt  172 (277)
T d1phka_          99 DYLTEKVTLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEK---LREVCGT  172 (277)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCC---BCCCCSC
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---cCCcccccccceEEEcCCCCeEEccchheeEccCCCc---eeeeecc
Confidence            8884 4579999999999999999999999   9999999999999999999999999999987654332   2445789


Q ss_pred             CcccCCcccCC------CCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          147 PGCEAPELWMP------YSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       147 ~~y~aPe~~~~------~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      +.|+|||.+.+      ..++.++||||+||+++||++|+.||....+.
T Consensus       173 ~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~  221 (277)
T d1phka_         173 PSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQM  221 (277)
T ss_dssp             GGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             CCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHH
Confidence            99999999852      35788999999999999999999999876644

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-37  Score=239.04  Aligned_cols=180  Identities=19%  Similarity=0.275  Sum_probs=132.4

Q ss_pred             CCccccCCCc----ceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGST----RFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~   70 (202)
                      |||+..+..+    ..||+|......  ......+|..|..+....+|+|++.      ......++++++.++++....
T Consensus        23 Vy~~~~~~~~~~~~~~vAvK~~~~~~--~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~v~e~~~~~~l~~~~  100 (283)
T d1mqba_          23 VYKGMLKTSSGKKEVPVAIKTLKAGY--TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFL  100 (283)
T ss_dssp             EEEEEEEC---CCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHH
T ss_pred             EEEEEEeCCCCEEEEEEEEEEECccc--ChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEEEEEecccCcchhhh
Confidence            6788766544    346655432211  1122335777888888899999874      334556889999999988776


Q ss_pred             cc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc-ccccCCCCCCC
Q 044746           71 KK--NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT-HITSTGRRRTP  147 (202)
Q Consensus        71 ~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~gt~  147 (202)
                      ..  ..+++.++..++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+++....... ........||+
T Consensus       101 ~~~~~~~~~~~~~~i~~~i~~gl~~lH~---~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~  177 (283)
T d1mqba_         101 REKDGEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPI  177 (283)
T ss_dssp             HHTTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCG
T ss_pred             hcccccccHHHHHHHHHHHHHhhhhccc---cccccCccccceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCc
Confidence            43  469999999999999999999999   9999999999999999999999999999987644322 22234456799


Q ss_pred             cccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          148 GCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       148 ~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      .|+|||++.+..++.++|||||||++|||++|..|+..
T Consensus       178 ~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~  215 (283)
T d1mqba_         178 RWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYW  215 (283)
T ss_dssp             GGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             cccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccc
Confidence            99999999999999999999999999999996555543

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-36  Score=236.89  Aligned_cols=181  Identities=22%  Similarity=0.299  Sum_probs=137.5

Q ss_pred             CCccccC-CCcceeehhhhchhhhhccCCcccCCcHHHHH---Hhccccccccc-----------cccceEEEEEccCCc
Q 044746            1 MEKPRNR-GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMI---AADNFSNLVGS-----------EDTETYIKGFLAMGP   65 (202)
Q Consensus         1 v~k~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~-----------~~~~~~~~~~~~~~~   65 (202)
                      ||+|++. .++++||.|+.+...... .....+..|..+.   ...+|+|++..           .....++++++.++.
T Consensus        23 V~~a~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~~~~~~~~e~~~~~~  101 (305)
T d1blxa_          23 VFKARDLKNGGRFVALKRVRVQTGEE-GMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDL  101 (305)
T ss_dssp             EEEEEETTTTTEEEEEEEEEEEBCTT-SCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECCSCBH
T ss_pred             EEEEEEECCCCEEEEEEEEehhhccc-hHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccccCceEEEEEEeccCCc
Confidence            7899985 456788877643322221 1122233333332   33478887642           223456777888876


Q ss_pred             hhhhh--ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCC
Q 044746           66 FYLLC--KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGR  143 (202)
Q Consensus        66 l~~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~  143 (202)
                      +....  ....+++..++.++.|++.||+|||+   ++|+||||||+|||++.++.+|++|||+++......   .....
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~---~~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~~~~---~~~~~  175 (305)
T d1blxa_         102 TTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQM---ALTSV  175 (305)
T ss_dssp             HHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGG---GGCCC
T ss_pred             hhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCEEecCCCccEEEEcCCCCeeecchhhhhhhcccc---cCCCc
Confidence            64333  44569999999999999999999999   999999999999999999999999999988654332   23456


Q ss_pred             CCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .||+.|+|||++.+.+++.++||||+||++|||++|++||.+..+
T Consensus       176 ~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~  220 (305)
T d1blxa_         176 VVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSD  220 (305)
T ss_dssp             CCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             ccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCH
Confidence            789999999999999999999999999999999999999986654

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-36  Score=234.98  Aligned_cols=180  Identities=18%  Similarity=0.148  Sum_probs=140.1

Q ss_pred             CCccccCCCcceeehhhhchhhhh---ccCCcccCCcHHHHHHhcc--cccccc------ccccceEEEEEccC-Cchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAM---EMDKPIRFTSPQRMIAADN--FSNLVG------SEDTETYIKGFLAM-GPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~i~------~~~~~~~~~~~~~~-~~l~~   68 (202)
                      ||+|++..+++.||.|+.......   ......++..|..+....+  |+|++.      ..+...++++++.+ +.+..
T Consensus        20 Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~~~lv~e~~~~~~~l~~   99 (273)
T d1xwsa_          20 VYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFD   99 (273)
T ss_dssp             EEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEEEECCSSEEEHHH
T ss_pred             EEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCeEEEEEEeccCcchHHH
Confidence            799999988898888865433221   2223445666766665544  788763      33445678888765 46665


Q ss_pred             hh-ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC-CCceEEeeeecceeccccCcccccCCCCCC
Q 044746           69 LC-KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE-NFFPKAADFGLAKLYNREHTHITSTGRRRT  146 (202)
Q Consensus        69 ~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt  146 (202)
                      ++ ....+++.+++.++.|++.||.|||+   ++|+||||||+||+++. ++.+||+|||+|+......    .....||
T Consensus       100 ~~~~~~~l~e~~~~~~~~qi~~al~~lH~---~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~~~----~~~~~GT  172 (273)
T d1xwsa_         100 FITERGALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTV----YTDFDGT  172 (273)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEEECCCTTCEECCSSC----BCCCCSC
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHHHHHH---CCCccccCcccceEEecCCCeEEECccccceeccccc----ccccccC
Confidence            55 45679999999999999999999999   99999999999999985 4799999999998654332    2345789


Q ss_pred             CcccCCcccCCCCC-CchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          147 PGCEAPELWMPYSV-TQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       147 ~~y~aPe~~~~~~~-~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      +.|+|||++.+..+ +.++||||+||++|||++|+.||....
T Consensus       173 ~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~  214 (273)
T d1xwsa_         173 RVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE  214 (273)
T ss_dssp             GGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH
T ss_pred             CCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCch
Confidence            99999999987665 567899999999999999999998754

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-36  Score=239.91  Aligned_cols=179  Identities=16%  Similarity=0.230  Sum_probs=147.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhccC-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKKN-   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~~-   73 (202)
                      ||+|++..+++.||.|+-+.....    ...+..|..++...+|+|++.      ..+..+++++++++|+|..++... 
T Consensus        21 Vy~~~~~~~~~~~AiK~i~~~~~~----~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~~~gg~L~~~i~~~~   96 (321)
T d1tkia_          21 VHRCVETSSKKTYMAKFVKVKGTD----QVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSA   96 (321)
T ss_dssp             EEEEEETTTTEEEEEEEECCCTHH----HHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTSSS
T ss_pred             EEEEEECCCCcEEEEEEEcCCccc----HHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEecCCCCcHHHHHHhcC
Confidence            799999988888888765432211    223556777788889998873      455567899999999999988643 


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC--CCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 -ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE--NFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 -~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~--~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                       .+++.++..++.|++.||+|||+   ++|+||||||+|||++.  ...+|++|||+++........   ....||+.|+
T Consensus        97 ~~l~e~~~~~i~~qi~~al~yLH~---~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~---~~~~~t~~y~  170 (321)
T d1tkia_          97 FELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNF---RLLFTAPEYY  170 (321)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEE---EEEESCGGGS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH---cCCCcccccccceeecCCCceEEEEcccchhhccccCCcc---cccccccccc
Confidence             58999999999999999999999   99999999999999984  458999999999876443322   2245699999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      |||...+..++.++||||+||++|+|++|++||......
T Consensus       171 ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~  209 (321)
T d1tkia_         171 APEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQ  209 (321)
T ss_dssp             CHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHH
T ss_pred             cchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHH
Confidence            999999999999999999999999999999999876553

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.2e-37  Score=240.47  Aligned_cols=184  Identities=21%  Similarity=0.269  Sum_probs=145.1

Q ss_pred             CCccccC-----CCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhh
Q 044746            1 MEKPRNR-----GSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||+|+.+     .++..||+|+.+..  ...+...+|..|.......+|+|++.      ..+...++++++++|+|..+
T Consensus        29 Vy~a~~~~~~~~~~~~~vAvK~i~~~--~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~~v~e~~~~g~L~~~  106 (301)
T d1lufa_          29 VFQARAPGLLPYEPFTMVAVKMLKEE--ASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEF  106 (301)
T ss_dssp             EEEEEEETSSTTSSEEEEEEEECCTT--CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHH
T ss_pred             EEEEEECCCccCCCCeEEEEEEEChh--cChHHHHHHHHHHHHHHhcCCCCcccceeeeccCCceEEEEEecCCCcHHHH
Confidence            6788754     34567777664322  11222456778888889999999874      34456689999999999887


Q ss_pred             hcc-------------------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEee
Q 044746           70 CKK-------------------------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAAD  124 (202)
Q Consensus        70 ~~~-------------------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~d  124 (202)
                      +..                         ..+++..+..++.|++.||+|||+   ++++||||||+|||++.++.+||+|
T Consensus       107 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~---~~ivHrDlKp~NILld~~~~~Kl~D  183 (301)
T d1lufa_         107 LRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---RKFVHRDLATRNCLVGENMVVKIAD  183 (301)
T ss_dssp             HHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECC
T ss_pred             HHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhccc---CCeEeeEEcccceEECCCCcEEEcc
Confidence            742                         248999999999999999999999   9999999999999999999999999


Q ss_pred             eecceeccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCC-CCCcchhcc
Q 044746          125 FGLAKLYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR-RNLEKEISE  189 (202)
Q Consensus       125 fgl~~~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~-~p~~~~~~~  189 (202)
                      ||+|+...............||+.|+|||.+.+..++.++|||||||++|||++|. +||....+.
T Consensus       184 FGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~  249 (301)
T d1lufa_         184 FGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHE  249 (301)
T ss_dssp             CSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH
T ss_pred             chhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCCHH
Confidence            99998665444433444567899999999999999999999999999999999985 677765544

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-36  Score=231.14  Aligned_cols=180  Identities=18%  Similarity=0.295  Sum_probs=145.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc--c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK--K   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~--~   72 (202)
                      ||+++.+ +++.||.|+.+...    .....|..|.......+|+|++.      ..+...++++++++|++..++.  .
T Consensus        20 Vy~~~~~-~~~~vAvK~l~~~~----~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~g~l~~~~~~~~   94 (258)
T d1k2pa_          20 VKYGKWR-GQYDVAIKMIKEGS----MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMR   94 (258)
T ss_dssp             EEEEEET-TTEEEEEEEEESSS----SCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCTTEEHHHHHHSGG
T ss_pred             EEEEEEC-CCCEEEEEEECcCc----CCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccCCCcHHHhhhccc
Confidence            7888876 45556655543321    12235778888888999999874      3344568899999999988753  4


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++..+..++.|++.||.|||+   ++|+||||||+||+++.++.+||+|||+++....... .......||+.|+||
T Consensus        95 ~~~~~~~~~~i~~qi~~gl~~LH~---~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~-~~~~~~~~t~~y~aP  170 (258)
T d1k2pa_          95 HRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY-TSSVGSKFPVRWSPP  170 (258)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHHHHH---TTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSC-CCCCCSCCCGGGCCH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHhh---cCcccccccceeEEEcCCCcEEECcchhheeccCCCc-eeecccCCCCCcCCc
Confidence            569999999999999999999999   9999999999999999999999999999986654322 233446689999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhcc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEISE  189 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~~  189 (202)
                      |.+....++.++|||||||++|||+| |+.||......
T Consensus       171 E~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~  208 (258)
T d1k2pa_         171 EVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS  208 (258)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHH
T ss_pred             HHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHH
Confidence            99998899999999999999999998 89999876554

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-36  Score=234.65  Aligned_cols=186  Identities=17%  Similarity=0.238  Sum_probs=140.8

Q ss_pred             CCccccCCC---cceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhc-
Q 044746            1 MEKPRNRGS---TRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCK-   71 (202)
Q Consensus         1 v~k~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~-   71 (202)
                      ||+++....   ...||+|+.+.......+...+|..|..+....+|+|++.     ..+...++++++++|++..... 
T Consensus        24 Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~~~~lv~e~~~~~~l~~~~~~  103 (273)
T d1u46a_          24 VRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRK  103 (273)
T ss_dssp             CEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHHHHHH
T ss_pred             EEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeecchheeeeeecCcchhhhhhc
Confidence            788875332   3356666544333333333456888888888999999873     2234468899999999887664 


Q ss_pred             -cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc-ccCCCCCCCcc
Q 044746           72 -KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI-TSTGRRRTPGC  149 (202)
Q Consensus        72 -~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~gt~~y  149 (202)
                       ...+++..++.++.|++.||.|||+   ++|+||||||+||+++.++.+||+|||+++......... ......|++.|
T Consensus       104 ~~~~l~~~~~~~~~~qi~~gl~ylH~---~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~  180 (273)
T d1u46a_         104 HQGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAW  180 (273)
T ss_dssp             HGGGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGG
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHhhh---CCEeeeeecHHHhccccccceeeccchhhhhcccCCCcceecCccccCccc
Confidence             3469999999999999999999999   999999999999999999999999999999765443322 22334568899


Q ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhcc
Q 044746          150 EAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEISE  189 (202)
Q Consensus       150 ~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~~  189 (202)
                      +|||.+.+..++.++||||||+++|||+| |++||.+....
T Consensus       181 ~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~  221 (273)
T d1u46a_         181 CAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS  221 (273)
T ss_dssp             CCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHH
T ss_pred             CCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHH
Confidence            99999999999999999999999999998 89999765443

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-36  Score=236.22  Aligned_cols=182  Identities=21%  Similarity=0.272  Sum_probs=143.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhh--cc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLC--KK   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~--~~   72 (202)
                      ||+|++..+++.||.|+-+... ........+..|..+....+|++++.      ..+..+++++++.++.+....  ..
T Consensus        18 Vy~~~~~~~~~~vAvK~i~~~~-~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e~~~~~~~~~~~~~~~   96 (298)
T d1gz8a_          18 VYKARNKLTGEVVALKKIRLDT-ETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASAL   96 (298)
T ss_dssp             EEEEEETTTCCEEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHTTT
T ss_pred             EEEEEECCCCCEEEEEEEehhh-cChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEeecCCchhhhhhhhcc
Confidence            7999999999999988754332 22233456777888888999999874      445556788888766444333  34


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++.++..++.|++.||+|||+   ++||||||||+|||++.++.+|++|||+|+.......  ......||+.|+||
T Consensus        97 ~~l~e~~~~~~~~qil~~L~yLH~---~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~--~~~~~~gt~~y~ap  171 (298)
T d1gz8a_          97 TGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR--TYTHEVVTLWYRAP  171 (298)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSB--CTTCCBCCCTTCCH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhhc---CCEEccccCchheeecccCcceeccCCcceeccCCcc--cceeecccceeeeh
Confidence            569999999999999999999999   9999999999999999999999999999986543322  23445689999999


Q ss_pred             cccCCCC-CCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          153 ELWMPYS-VTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       153 e~~~~~~-~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |.+.... ++.++|+||+||++|+|++|+.||...+.
T Consensus       172 E~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~  208 (298)
T d1gz8a_         172 EILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSE  208 (298)
T ss_dssp             HHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             hhhccccCCCccccccccchhhhHHhhCCCCCCCCCH
Confidence            9887665 57899999999999999999999976543

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-36  Score=234.70  Aligned_cols=176  Identities=27%  Similarity=0.364  Sum_probs=136.0

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc-----ccccceEEEEEccCCchhhhhcc---
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG-----SEDTETYIKGFLAMGPFYLLCKK---   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~l~~~~~~---   72 (202)
                      ||+++++++.+ ||.|+.+...    .....|..|.......+|+|++.     ..+..+++++++++|++..++..   
T Consensus        33 Vy~~~~~~~~~-vAiK~l~~~~----~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~lv~Ey~~~g~l~~~~~~~~~  107 (285)
T d1fmka3          33 VWMGTWNGTTR-VAIKTLKPGT----MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETG  107 (285)
T ss_dssp             EEEEEETTTEE-EEEEECCTTS----SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTCBHHHHHSHHHH
T ss_pred             EEEEEECCCCE-EEEEEECccc----CCHHHHHHHHHHHHhcccCCEeEEEEEEecCCeEEEEEecCCCchhhhhhhccc
Confidence            78998877755 5655543221    12345788888889999999874     23345689999999998877743   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCC
Q 044746           73 NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAP  152 (202)
Q Consensus        73 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  152 (202)
                      ..+++.+++.++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+++....... .......||+.|+||
T Consensus       108 ~~l~~~~~~~i~~~i~~gl~~LH~---~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aP  183 (285)
T d1fmka3         108 KYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY-TARQGAKFPIKWTAP  183 (285)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCTTC---------------CCGGGSCH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhh---hheecccccceEEEECCCCcEEEcccchhhhccCCCc-eeeccccccccccCh
Confidence            469999999999999999999999   9999999999999999999999999999987643322 223345679999999


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHcCCCCCcc
Q 044746          153 ELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEK  185 (202)
Q Consensus       153 e~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~  185 (202)
                      |++....++.++|||||||++|||++|..|+..
T Consensus       184 E~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~  216 (285)
T d1fmka3         184 EAALYGRFTIKSDVWSFGILLTELTTKGRVPYP  216 (285)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             HHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCC
Confidence            999999999999999999999999996555543

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=233.77  Aligned_cols=182  Identities=19%  Similarity=0.213  Sum_probs=135.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc----------cceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED----------TETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------~~~~~~~~~~~~~l~~~~   70 (202)
                      |||++..  ++.||+|+.+......    ..+..|.......+|+|++...+          ..+++++++++|+|..++
T Consensus        19 Vy~~~~~--g~~vAvK~~~~~~~~~----~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~g~L~~~l   92 (303)
T d1vjya_          19 VWRGKWR--GEEVAVKIFSSREERS----WFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYL   92 (303)
T ss_dssp             EEEEEET--TEEEEEEEECGGGHHH----HHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHH
T ss_pred             EEEEEEC--CEEEEEEEECccchhH----HHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEecccCCCHHHHH
Confidence            6888763  4567766543322111    11112333334568998874221          245899999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHhCC-----CCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc--cccCCC
Q 044746           71 KKNILGFGQLREIEVSTSKGIAYLHEEC-----RQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH--ITSTGR  143 (202)
Q Consensus        71 ~~~~~~~~~~~~~~~~i~~~l~~lH~~~-----~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~--~~~~~~  143 (202)
                      +...+++.++..++.|++.||.|+|+.+     .++|+||||||+|||++.++.+||+|||+++........  ......
T Consensus        93 ~~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~  172 (303)
T d1vjya_          93 NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHR  172 (303)
T ss_dssp             HHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEECC----C
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccccCCCcceeccccce
Confidence            9999999999999999999999999621     269999999999999999999999999999976543222  123456


Q ss_pred             CCCCcccCCcccCCCC------CCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          144 RRTPGCEAPELWMPYS------VTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~~------~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .||+.|+|||++.+..      ++.++|||||||++|||+||.+||.....
T Consensus       173 ~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~  223 (303)
T d1vjya_         173 VGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHED  223 (303)
T ss_dssp             CSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCC
T ss_pred             ecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccc
Confidence            7899999999987643      56789999999999999999988765443

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=233.74  Aligned_cols=183  Identities=22%  Similarity=0.259  Sum_probs=142.4

Q ss_pred             CCccccCCCc-------ceeehhhhchhhhhccCCcccCCcHHHHHHh-cccccccc------ccccceEEEEEccCCch
Q 044746            1 MEKPRNRGST-------RFITRTIDKSLDAMEMDKPIRFTSPQRMIAA-DNFSNLVG------SEDTETYIKGFLAMGPF   66 (202)
Q Consensus         1 v~k~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~------~~~~~~~~~~~~~~~~l   66 (202)
                      ||+++..+.+       ..||+|+.+....  ......+..|...... .+|+|++.      ..+...++++++++|+|
T Consensus        29 Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~--~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~~~~~v~e~~~~g~l  106 (299)
T d1fgka_          29 VVLAEAIGLDKDKPNRVTKVAVKMLKSDAT--EKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNL  106 (299)
T ss_dssp             EEEEEEECC----CCCEEEEEEECCCTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEECCCTTCBH
T ss_pred             EEEEEEcCCCcccccCceEEEEEEECcccC--hHHHHHHHHHHHHHHHhcCCCeEEecccccccCCeEEEEEEccCCCcH
Confidence            5777654443       3566655432211  1122345555554544 48998874      34456788999999999


Q ss_pred             hhhhccC-----------------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecce
Q 044746           67 YLLCKKN-----------------ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK  129 (202)
Q Consensus        67 ~~~~~~~-----------------~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~  129 (202)
                      ..++...                 .+++..++.++.|++.||+|||+   .+++||||||+|||++.++.+||+|||+++
T Consensus       107 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~---~~ivHrDiKp~NiLl~~~~~~kl~dfg~~~  183 (299)
T d1fgka_         107 REYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLAR  183 (299)
T ss_dssp             HHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECSTTCCC
T ss_pred             HHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhh---CCEEeeeecccceeecCCCCeEeccchhhc
Confidence            9988433                 48999999999999999999999   999999999999999999999999999999


Q ss_pred             eccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          130 LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       130 ~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ...............||+.|+|||.+.+..++.++||||||+++|||++ |++||.....
T Consensus       184 ~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~  243 (299)
T d1fgka_         184 DIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV  243 (299)
T ss_dssp             CGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH
T ss_pred             cccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCH
Confidence            7765554444555678999999999999999999999999999999998 7888875544

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-35  Score=231.34  Aligned_cols=185  Identities=20%  Similarity=0.243  Sum_probs=143.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc--------------cccceEEEEEccCCch
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS--------------EDTETYIKGFLAMGPF   66 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------------~~~~~~~~~~~~~~~l   66 (202)
                      ||+|++..+++.||+|+...... ......++..|..++...+|+|++..              .+..+++++++.++.+
T Consensus        26 Vy~a~~~~~~~~vAvK~i~~~~~-~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~~  104 (318)
T d3blha1          26 VFKARHRKTGQKVALKKVLMENE-KEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLA  104 (318)
T ss_dssp             EEEEEETTTCCEEEEEEC----C-TTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC----------CEEEEEECCCEEHH
T ss_pred             EEEEEECCCCCEEEEEEEehhhc-chHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccCceEEEEEeccCCCcc
Confidence            79999999999999887543322 22334556678888888899987642              1234577888887776


Q ss_pred             hhhh-ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcc--cccCCC
Q 044746           67 YLLC-KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTH--ITSTGR  143 (202)
Q Consensus        67 ~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~--~~~~~~  143 (202)
                      .... ....++...++.++.|++.||.|||+   ++|+||||||+|||++.++.+|++|||+++........  ......
T Consensus       105 ~~~~~~~~~~~~~~~~~i~~qil~~l~~lH~---~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  181 (318)
T d3blha1         105 GLLSNVLVKFTLSEIKRVMQMLLNGLYYIHR---NKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNR  181 (318)
T ss_dssp             HHHTCTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCTTCEECCC-----CCCCCSC
T ss_pred             chhhhcccccccHHHHHHHHHHHHHHHHhcc---CCEEecCcCchheeecCCCcEEeeecceeeecccccccccccccce
Confidence            5444 34569999999999999999999999   99999999999999999999999999999866533221  122335


Q ss_pred             CCCCcccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          144 RRTPGCEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      .||+.|+|||++.+. .++.++||||+||+++||++|++||.+..+.
T Consensus       182 ~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~  228 (318)
T d3blha1         182 VVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQ  228 (318)
T ss_dssp             CSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             ecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHH
Confidence            689999999998765 6899999999999999999999999865543

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-34  Score=227.82  Aligned_cols=180  Identities=14%  Similarity=0.152  Sum_probs=137.1

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccc-------cccccceEEEEEccCCchhhhh--c
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLV-------GSEDTETYIKGFLAMGPFYLLC--K   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~~~~~~~~~~~~l~~~~--~   71 (202)
                      ||+|++..+++.||.|+.....     ...++..|..+....+|++++       ..++...++++++. +++....  .
T Consensus        23 Vy~a~~~~~~~~vAvK~~~~~~-----~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~~-~~l~~~~~~~   96 (299)
T d1ckia_          23 IYLGTDIAAGEEVAIKLECVKT-----KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLG-PSLEDLFNFC   96 (299)
T ss_dssp             EEEEEETTTTEEEEEEEEESCT-----TSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECCC-CBHHHHHHHT
T ss_pred             EEEEEECCCCCEEEEEEEchhc-----cCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEcC-Cchhhhhhhc
Confidence            7999999999999998754421     123455666666666666543       12333445666654 5544443  3


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC---CCceEEeeeecceeccccCcc-----cccCCC
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE---NFFPKAADFGLAKLYNREHTH-----ITSTGR  143 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~---~~~~kl~dfgl~~~~~~~~~~-----~~~~~~  143 (202)
                      ...+++..+..++.|++.||+|||+   ++|+||||||+||++..   +..++++|||+|+........     ......
T Consensus        97 ~~~~~~~~~~~~~~qi~~~l~~lH~---~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~  173 (299)
T d1ckia_          97 SRKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNL  173 (299)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSC
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCCc
Confidence            4569999999999999999999999   99999999999999853   457999999999976543221     123446


Q ss_pred             CCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhcc
Q 044746          144 RRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEISE  189 (202)
Q Consensus       144 ~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~~  189 (202)
                      .||+.|+|||.+.+..++.++|||||||+++||++|+.||......
T Consensus       174 ~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~  219 (299)
T d1ckia_         174 TGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAA  219 (299)
T ss_dssp             CCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC--
T ss_pred             CCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchH
Confidence            7899999999999999999999999999999999999999765543

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=231.90  Aligned_cols=175  Identities=20%  Similarity=0.193  Sum_probs=139.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc------------cceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED------------TETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------~~~~~~~~~~~~~l~~   68 (202)
                      ||+|++..+++.||.|+.+..       ...+..|..++...+|+|++...+            +.++++++++++.+..
T Consensus        36 Vy~a~~~~~~~~vAiK~i~~~-------~~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~~~~~~~~  108 (350)
T d1q5ka_          36 VYQAKLCDSGELVAIKKVLQD-------KRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRV  108 (350)
T ss_dssp             EEEEEETTTCCEEEEEEEECC-------SSSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEECCSEEHHHH
T ss_pred             EEEEEECCCCCEEEEEEECcc-------chHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEeccCCccHHH
Confidence            799999999999998875332       123456777888889998874221            2356788888764433


Q ss_pred             hh----ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC-ceEEeeeecceeccccCcccccCCC
Q 044746           69 LC----KKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF-FPKAADFGLAKLYNREHTHITSTGR  143 (202)
Q Consensus        69 ~~----~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~-~~kl~dfgl~~~~~~~~~~~~~~~~  143 (202)
                      +.    ....+++.+++.++.|++.||+|||+   ++|+||||||+|||++.++ .+||+|||+++.......   ....
T Consensus       109 l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~---~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~~---~~~~  182 (350)
T d1q5ka_         109 ARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEP---NVSY  182 (350)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTTSC---CCSC
T ss_pred             HHhhhhccCCCCHHHHHHHHHHHHHHHHHHHh---cCCcccCCCcceEEEecCCCceeEecccchhhccCCcc---cccc
Confidence            32    34569999999999999999999999   9999999999999999775 899999999987654332   2335


Q ss_pred             CCCCcccCCcccCC-CCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          144 RRTPGCEAPELWMP-YSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       144 ~gt~~y~aPe~~~~-~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .||+.|+|||.+.+ ..++.++||||+||++|||++|++||.....
T Consensus       183 ~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~  228 (350)
T d1q5ka_         183 ICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSG  228 (350)
T ss_dssp             CSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSH
T ss_pred             cccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCH
Confidence            67999999998775 4689999999999999999999999976554

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-35  Score=232.54  Aligned_cols=178  Identities=22%  Similarity=0.255  Sum_probs=144.7

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccccc------------cceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSED------------TETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------~~~~~~~~~~~~~l~~   68 (202)
                      ||+|+++.+++.||.|+.+.... ......++..|..++...+|++++...+            ..+++++++ +.+|..
T Consensus        34 V~~~~~~~~~~~vAiK~i~~~~~-~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~  111 (346)
T d1cm8a_          34 VCSAVDGRTGAKVAIKKLYRPFQ-SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGK  111 (346)
T ss_dssp             EEEEEETTTCCEEEEEECSSTTS-SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHH
T ss_pred             EEEEEECCCCCEEEEEEEchhhc-ChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccceEEEEEecc-cccHHH
Confidence            79999999899998877543211 1122345667777788889998874221            235777877 567888


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      +.+...+++..++.++.|++.||.|||+   ++|+||||||+|||++.++.+|++|||+++.....     .....||+.
T Consensus       112 ~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~t~~  183 (346)
T d1cm8a_         112 LMKHEKLGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLARQADSE-----MTGYVVTRW  183 (346)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEECCSS-----CCSSCSCGG
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHHh---CCCcccccCcchhhcccccccccccccceeccCCc-----ccccccccc
Confidence            8888899999999999999999999999   99999999999999999999999999999875432     234567999


Q ss_pred             ccCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          149 CEAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       149 y~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |+|||.+.+. .++.++||||+||+++||++|++||.+...
T Consensus       184 y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~  224 (346)
T d1cm8a_         184 YRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDH  224 (346)
T ss_dssp             GCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             ccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCCh
Confidence            9999998764 568999999999999999999999987643

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1.6e-34  Score=226.58  Aligned_cols=179  Identities=12%  Similarity=0.101  Sum_probs=134.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccc-c---cccc---ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNF-S---NLVG---SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~i~---~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||+|++..+++.||.|+.+....     ...+..|........+ +   ++.+   .+....++++++ +++|..+... 
T Consensus        21 Vy~a~~~~~~~~vAvK~~~~~~~-----~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~-~~~l~~~~~~~   94 (293)
T d1csna_          21 IFEGTNLLNNQQVAIKFEPRRSD-----APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLC   94 (293)
T ss_dssp             EEEEEETTTTEEEEEEEEECCTT-----SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHT
T ss_pred             EEEEEECCCCCEEEEEEEccccC-----cHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEec-CCCHHHHHHhh
Confidence            79999999999999887543221     1223334333333322 2   3322   334445566665 6787777643 


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcC-----CCceEEeeeecceeccccCcc-----cccC
Q 044746           73 -NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDE-----NFFPKAADFGLAKLYNREHTH-----ITST  141 (202)
Q Consensus        73 -~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~-----~~~~kl~dfgl~~~~~~~~~~-----~~~~  141 (202)
                       ..++...+..++.|++.||+|||+   ++|+||||||+||+++.     ++.++|+|||+|+........     ....
T Consensus        95 ~~~~~~~~~~~i~~q~~~~l~~lH~---~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~  171 (293)
T d1csna_          95 GRKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKK  171 (293)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCC
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHH---CCceeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecccC
Confidence             469999999999999999999999   99999999999999964     578999999999976533211     1233


Q ss_pred             CCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          142 GRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       142 ~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      ...||+.|+|||++.+..++.++||||+|+++|||+||+.||.....
T Consensus       172 ~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~  218 (293)
T d1csna_         172 NLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKA  218 (293)
T ss_dssp             CCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCS
T ss_pred             ceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccc
Confidence            46799999999999999999999999999999999999999976544

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=5.1e-35  Score=228.47  Aligned_cols=181  Identities=20%  Similarity=0.218  Sum_probs=139.5

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhc-cC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCK-KN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~-~~   73 (202)
                      ||||++..+ +.||.|+.+... .......++..|..+....+|+|++.      ..+...+++++..++.+..+.. .+
T Consensus        18 Vy~~~~~~~-~~vAvK~i~~~~-~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~~~~~~~~~~~~~~~   95 (286)
T d1ob3a_          18 VYKAQNNYG-ETFALKKIRLEK-EDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEG   95 (286)
T ss_dssp             EEEEEETTS-CEEEEEEECCSS-GGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSEEHHHHHHTSTT
T ss_pred             EEEEEeCCC-CEEEEEEEehhh-cChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEeehhhhHHHHHhhcC
Confidence            799998744 566666543322 22334566778888888999999874      3444556777777776666654 45


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+|++|||.+........  ......|++.|+|||
T Consensus        96 ~l~~~~~~~i~~qi~~~L~~LH~---~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~--~~~~~~~~~~y~~pE  170 (286)
T d1ob3a_          96 GLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR--KYTHEIVTLWYRAPD  170 (286)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----------CCCTTCCHH
T ss_pred             CcchhhhHHHHHHHHHHHHHhcc---CcEEecCCCCceeeEcCCCCEEecccccceecccCcc--ccceecccchhhhHH
Confidence            69999999999999999999999   9999999999999999999999999999986543322  123345799999999


Q ss_pred             ccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          154 LWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       154 ~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      .+.+. .++.++|+||+||+++||++|++||.+..+
T Consensus       171 ~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~  206 (286)
T d1ob3a_         171 VLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSE  206 (286)
T ss_dssp             HHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             HHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCH
Confidence            98754 578999999999999999999999976543

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-35  Score=229.81  Aligned_cols=183  Identities=20%  Similarity=0.274  Sum_probs=141.6

Q ss_pred             CCccccCCCc---ceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc-------ccceEEEEEccCCchhhhh
Q 044746            1 MEKPRNRGST---RFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE-------DTETYIKGFLAMGPFYLLC   70 (202)
Q Consensus         1 v~k~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~l~~~~   70 (202)
                      |||++....+   ..||+|..+..  .......+|..|.......+|+|++...       +...++++++++|+|..+.
T Consensus        43 Vyk~~~~~~~~~~~~vAvK~~~~~--~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~~~g~l~~~~  120 (311)
T d1r0pa_          43 VYHGTLLDNDGKKIHCAVKSLNRI--TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFI  120 (311)
T ss_dssp             EEEEEECC----CEEEEEEEECCC--CCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECCTTCBHHHHH
T ss_pred             EEEEEEECCCCEEEEEEEEEECcc--cCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEeecCchhhhh
Confidence            6888775543   24565543221  1222345688888888889999987432       3345899999999998887


Q ss_pred             ccC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc--ccccCCCCCC
Q 044746           71 KKN--ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT--HITSTGRRRT  146 (202)
Q Consensus        71 ~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~--~~~~~~~~gt  146 (202)
                      ...  .+++..+..++.|++.||.|+|+   .+|+||||||+|||++.++.+||+|||+++.......  ........||
T Consensus       121 ~~~~~~~~~~~~~~i~~qia~gL~~lH~---~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt  197 (311)
T d1r0pa_         121 RNETHNPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLP  197 (311)
T ss_dssp             HCTTCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCC
T ss_pred             ccccccchHHHHHHHHHHHHHhhhhhcc---cCcccCCccHHhEeECCCCCEEEecccchhhccccccccceeccccccc
Confidence            654  47888999999999999999999   9999999999999999999999999999987654322  2223345689


Q ss_pred             CcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          147 PGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       147 ~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +.|+|||.+....++.++||||||+++|||++|..||.....
T Consensus       198 ~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~  239 (311)
T d1r0pa_         198 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN  239 (311)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC---
T ss_pred             ccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCC
Confidence            999999999988999999999999999999998777765443

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-35  Score=231.92  Aligned_cols=181  Identities=21%  Similarity=0.277  Sum_probs=139.4

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhhhhcc-
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-   72 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-   72 (202)
                      ||+++++.++..+++++.+.......+....|..|....... +|+|++.      ..+...++++++++|+|..++.. 
T Consensus        26 Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV~ey~~~g~L~~~l~~~  105 (309)
T d1fvra_          26 VLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKS  105 (309)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTT
T ss_pred             EEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEEEEecCCCcHHHHHhhc
Confidence            688888777765544443332222333445677787777776 7998874      34456688999999999998743 


Q ss_pred             ----------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCc
Q 044746           73 ----------------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHT  136 (202)
Q Consensus        73 ----------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~  136 (202)
                                      ..+++..+..++.|++.||.|+|+   ++++||||||+|||++.++.+||+|||+++.......
T Consensus       106 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~---~~iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~~~~  182 (309)
T d1fvra_         106 RVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVK  182 (309)
T ss_dssp             CHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECGGGCEEECCTTCEESSCEECC
T ss_pred             cccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhc---CCccccccccceEEEcCCCceEEcccccccccccccc
Confidence                            468999999999999999999999   9999999999999999999999999999986443222


Q ss_pred             ccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCC-CCCcchh
Q 044746          137 HITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRR-RNLEKEI  187 (202)
Q Consensus       137 ~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~-~p~~~~~  187 (202)
                         .....||..|+|||.+.+..++.++|||||||++|||++|. +||....
T Consensus       183 ---~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~  231 (309)
T d1fvra_         183 ---KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT  231 (309)
T ss_dssp             ---C----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             ---ccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCC
Confidence               23345799999999999999999999999999999999965 5676543

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-35  Score=229.56  Aligned_cols=183  Identities=19%  Similarity=0.288  Sum_probs=142.9

Q ss_pred             CCcccc-----CCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc------ccccceEEEEEccCCchhh
Q 044746            1 MEKPRN-----RGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG------SEDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~------~~~~~~~~~~~~~~~~l~~   68 (202)
                      ||+|+.     ...+..||+|..+....  ......|..|....... +|+|++.      ......++++++++|+|..
T Consensus        39 Vy~a~~~~~~~~~~~~~vAvK~i~~~~~--~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~~lvmE~~~~g~l~~  116 (311)
T d1t46a_          39 VVEATAYGLIKSDAAMTVAVKMLKPSAH--LTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLN  116 (311)
T ss_dssp             EEEEEEESSSSTTCEEEEEEEEECTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHH
T ss_pred             EEEEEEeccccCCCCeEEEEEEECcccC--HHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCEEEEEEEcCCCCCHHH
Confidence            566653     34556777766433221  11223455665555555 7999874      3344678999999999988


Q ss_pred             hhccC-------------------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecce
Q 044746           69 LCKKN-------------------ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAK  129 (202)
Q Consensus        69 ~~~~~-------------------~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~  129 (202)
                      ++...                   .+++..++.++.|++.||.|||+   ++++||||||+||+++.++.++++|||+++
T Consensus       117 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~---~~ivHrDLKp~NIl~~~~~~~ki~DfG~~~  193 (311)
T d1t46a_         117 FLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNILLTHGRITKICDFGLAR  193 (311)
T ss_dssp             HHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEETTTEEEECCCGGGS
T ss_pred             HHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccccccccccccCcccccccchhe
Confidence            87432                   58999999999999999999999   999999999999999999999999999999


Q ss_pred             eccccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhc
Q 044746          130 LYNREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEIS  188 (202)
Q Consensus       130 ~~~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~  188 (202)
                      ...............||+.|+|||.+....++.++|||||||++|||+| |.+||.....
T Consensus       194 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~  253 (311)
T d1t46a_         194 DIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPV  253 (311)
T ss_dssp             CTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCS
T ss_pred             eccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCH
Confidence            7765544445566788999999999998899999999999999999998 5666655443

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-34  Score=230.21  Aligned_cols=179  Identities=20%  Similarity=0.257  Sum_probs=143.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccccc-----------ccceEEEEEccCCchhhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGSE-----------DTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~~~~~~~l~~~   69 (202)
                      ||+|++..+++.||.|+.+.... ......++..|..++...+|++++...           ....++++++.+|+|..+
T Consensus        34 Vy~a~~~~~~~~vAiK~i~~~~~-~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~~~~i~~~~~gg~L~~~  112 (348)
T d2gfsa1          34 VCAAFDTKTGLRVAVKKLSRPFQ-SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNI  112 (348)
T ss_dssp             EEEEEETTTTEEEEEEECSCTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHH
T ss_pred             EEEEEECCCCCEEEEEEECchhc-ChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCceEEEEEeecCCchhhh
Confidence            79999999999999887543221 112233566788888888999887422           223577888999999999


Q ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcc
Q 044746           70 CKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGC  149 (202)
Q Consensus        70 ~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y  149 (202)
                      +..+.+++.+++.++.|++.||.|||+   ++|+||||||+|||++.++.+|++|||++......     .....|++.|
T Consensus       113 ~~~~~l~e~~~~~i~~qil~aL~~LH~---~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~~-----~~~~~g~~~y  184 (348)
T d2gfsa1         113 VKCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVATRWY  184 (348)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCC----CCTGG-----GSSSCHHHHT
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHh---CCCcccccCCccccccccccccccccchhcccCcc-----cccccccccc
Confidence            998999999999999999999999999   99999999999999999999999999998754322     2345678999


Q ss_pred             cCCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          150 EAPELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       150 ~aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      +|||...+. .++.++||||+||++++|++|++||.+.+.
T Consensus       185 ~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~  224 (348)
T d2gfsa1         185 RAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH  224 (348)
T ss_dssp             SCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             cCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCH
Confidence            999987765 468899999999999999999999976543

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=223.11  Aligned_cols=174  Identities=23%  Similarity=0.316  Sum_probs=132.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc-------cccceEEEEEccCCchhhhhccC
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS-------EDTETYIKGFLAMGPFYLLCKKN   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------~~~~~~~~~~~~~~~l~~~~~~~   73 (202)
                      |||++..+  ..||+|+.+..     .....|..|.......+|+|++..       .+..+++++++++|+|..++...
T Consensus        23 Vy~~~~~~--~~vAvK~i~~~-----~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~g~L~~~l~~~   95 (262)
T d1byga_          23 VMLGDYRG--NKVAVKCIKND-----ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSR   95 (262)
T ss_dssp             EEEEEETT--EEEEEEECCCC-----C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHH
T ss_pred             EEEEEECC--eEEEEEEECcH-----HHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccCCCCHHHHHHhc
Confidence            68888753  34555554322     123456778888888899988742       12346899999999999987543


Q ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           74 ---ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        74 ---~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                         .+++..++.++.|++.||.|||+   .+++||||||+||+++.++.+|++|||+++......     ....+|+.|+
T Consensus        96 ~~~~l~~~~~~~i~~~i~~al~ylH~---~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~-----~~~~~~~~y~  167 (262)
T d1byga_          96 GRSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-----DTGKLPVKWT  167 (262)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC-----------------CCTTTS
T ss_pred             CCCCCCHHHHHHHHHHHHhhcccccc---CceeccccchHhheecCCCCEeecccccceecCCCC-----ccccccccCC
Confidence               48999999999999999999999   999999999999999999999999999998654322     2234588999


Q ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHc-CCCCCcchhcc
Q 044746          151 APELWMPYSVTQKCDVFSFGMLLFEVVG-RRRNLEKEISE  189 (202)
Q Consensus       151 aPe~~~~~~~~~~~Diws~G~~l~el~~-g~~p~~~~~~~  189 (202)
                      |||++.+..++.++|||||||++|||+| |++||......
T Consensus       168 aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~  207 (262)
T d1byga_         168 APEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK  207 (262)
T ss_dssp             CHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG
T ss_pred             ChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHH
Confidence            9999988899999999999999999998 78888765443

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-34  Score=227.09  Aligned_cols=183  Identities=17%  Similarity=0.250  Sum_probs=144.7

Q ss_pred             CCccccCC-----CcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhh
Q 044746            1 MEKPRNRG-----STRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||+|.+.+     .+..||+|..+...  .......|..|..+....+|+|++.      ..+...++++++++|+|..+
T Consensus        36 Vy~a~~~~~~~~~~~~~VAvK~~~~~~--~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lv~e~~~~g~l~~~  113 (308)
T d1p4oa_          36 VYEGVAKGVVKDEPETRVAIKTVNEAA--SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSY  113 (308)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECCTTS--CHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHH
T ss_pred             EEEEEECCcccCCCCcEEEEEEECccc--ChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCceeEEEeecCCCCHHHH
Confidence            56666542     34566766543221  1122345778888888899998874      34456789999999999887


Q ss_pred             hcc-----------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCccc
Q 044746           70 CKK-----------NILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHI  138 (202)
Q Consensus        70 ~~~-----------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~  138 (202)
                      +..           ..+++..+..++.|++.||.|||+   ++|+||||||+|||++.++.+||+|||+++.........
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~---~~ivHrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~~~~  190 (308)
T d1p4oa_         114 LRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYR  190 (308)
T ss_dssp             HHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEE
T ss_pred             HHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhh---CCeeeceEcCCceeecCCceEEEeecccceeccCCccee
Confidence            732           347899999999999999999999   999999999999999999999999999998766554444


Q ss_pred             ccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcC-CCCCcchhc
Q 044746          139 TSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGR-RRNLEKEIS  188 (202)
Q Consensus       139 ~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g-~~p~~~~~~  188 (202)
                      ......||+.|+|||.+.+..++.++||||||+++|||+|| ++||.....
T Consensus       191 ~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~  241 (308)
T d1p4oa_         191 KGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN  241 (308)
T ss_dssp             GGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH
T ss_pred             eccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCH
Confidence            45556789999999999999999999999999999999998 477765443

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=224.20  Aligned_cols=186  Identities=17%  Similarity=0.194  Sum_probs=144.6

Q ss_pred             CCcccc---CCCcceeehhhhchhh-hhccCCcccCCcHHHHHHhccc-ccccc------ccccceEEEEEccCCchhhh
Q 044746            1 MEKPRN---RGSTRFITRTIDKSLD-AMEMDKPIRFTSPQRMIAADNF-SNLVG------SEDTETYIKGFLAMGPFYLL   69 (202)
Q Consensus         1 v~k~~~---~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~i~------~~~~~~~~~~~~~~~~l~~~   69 (202)
                      ||+|++   ..+++.||.|+-+... ........++..|.......+| ++++.      ......++++++.+|+|..+
T Consensus        40 Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~~~~v~e~~~~~~L~~~  119 (322)
T d1vzoa_          40 VFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTH  119 (322)
T ss_dssp             EEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEEECCCCSCBHHHH
T ss_pred             EEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCceeeeeecccccHHHHH
Confidence            678875   4457778877643322 2233345668888887777766 67753      34455688899999999888


Q ss_pred             hc-cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           70 CK-KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        70 ~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      +. .+.++...+..++.|++.||+|+|+   ++|+||||||+||+++.++.++|+|||+++......... .....|++.
T Consensus       120 i~~~~~~~e~~~~~~~~Qi~~al~~lH~---~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~~~~-~~~~~g~~~  195 (322)
T d1vzoa_         120 LSQRERFTEHEVQIYVGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETER-AYDFCGTIE  195 (322)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGG-GCGGGSCCT
T ss_pred             HHhcccccHHHHHHHHHHHHHHHHHhhc---CCEEeccCCccceeecCCCCEEEeeccchhhhccccccc-ccccccccc
Confidence            74 4568899999999999999999999   999999999999999999999999999998764433222 234567999


Q ss_pred             ccCCcccCCC--CCCchhhHHHHHHHHHHHHcCCCCCcchhccc
Q 044746          149 CEAPELWMPY--SVTQKCDVFSFGMLLFEVVGRRRNLEKEISEG  190 (202)
Q Consensus       149 y~aPe~~~~~--~~~~~~Diws~G~~l~el~~g~~p~~~~~~~~  190 (202)
                      |++||.+.+.  .++.++||||+||++|||++|+.||......+
T Consensus       196 ~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~  239 (322)
T d1vzoa_         196 YMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKN  239 (322)
T ss_dssp             TCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCC
T ss_pred             cchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            9999998754  46789999999999999999999998765543

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=2.7e-33  Score=222.53  Aligned_cols=174  Identities=20%  Similarity=0.261  Sum_probs=139.3

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-ccccccc--------ccccceEEEEEccCCchhhhhc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-NFSNLVG--------SEDTETYIKGFLAMGPFYLLCK   71 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~--------~~~~~~~~~~~~~~~~l~~~~~   71 (202)
                      ||+|++..+++.||.|+.+...      ..++..|..++... +|++++.        ......++++++.+++|..+. 
T Consensus        51 V~~a~~~~~~~~vAiK~i~~~~------~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~-  123 (328)
T d3bqca1          51 VFEAINITNNEKVVVKILKPVK------KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLY-  123 (328)
T ss_dssp             EEEEEETTTTEEEEEEEECSSC------HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEECCCSCBGGGTT-
T ss_pred             EEEEEECCCCCEEEEEEECHHH------HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEeecCCCcHHHHh-
Confidence            7999999999999988754321      23455565555554 5888763        223456788999999987764 


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC-ceEEeeeecceeccccCcccccCCCCCCCccc
Q 044746           72 KNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF-FPKAADFGLAKLYNREHTHITSTGRRRTPGCE  150 (202)
Q Consensus        72 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~-~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~  150 (202)
                       +.+++.+++.++.|++.||.|||+   ++|+||||||+|||++.++ .++++|||+|+.......   .....||+.|+
T Consensus       124 -~~l~e~~i~~i~~qil~aL~~LH~---~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~---~~~~~~t~~y~  196 (328)
T d3bqca1         124 -QTLTDYDIRFYMYEILKALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE---YNVRVASRYFK  196 (328)
T ss_dssp             -TSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCC---CCSCCSCGGGC
T ss_pred             -cCCCHHHHHHHHHHHHHHHHHHhh---cccccccccccceEEcCCCCeeeecccccceeccCCCc---ccccccCcccc
Confidence             469999999999999999999999   9999999999999998655 689999999987654332   23456799999


Q ss_pred             CCcccCCC-CCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          151 APELWMPY-SVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       151 aPe~~~~~-~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |||.+.+. .++.++|+||+||+++|+++|+.||....+
T Consensus       197 aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~  235 (328)
T d3bqca1         197 GPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHD  235 (328)
T ss_dssp             CHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSS
T ss_pred             CcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCch
Confidence            99998765 579999999999999999999999976443

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.9e-33  Score=218.75  Aligned_cols=180  Identities=19%  Similarity=0.223  Sum_probs=144.2

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhcccccccc------ccccceEEEEEccCCchhhhhcc-C
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVG------SEDTETYIKGFLAMGPFYLLCKK-N   73 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~l~~~~~~-~   73 (202)
                      ||+|++..+++.||.|+.+... .......++..|..+....+|+|++.      ......++++++.++.+..+... +
T Consensus        18 V~~~~~~~~~~~vAvK~i~~~~-~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~~~~~~~l~~~~~~~~   96 (292)
T d1unla_          18 VFKAKNRETHEIVALKRVRLDD-DDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNG   96 (292)
T ss_dssp             EEEEEETTTCCEEEEEEEESSC-SSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSEEHHHHHHHTTT
T ss_pred             EEEEEECCCCcEEEEEEEehhh-CChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEeeecccccccccccccc
Confidence            7999999999999998864332 22233456777888888899998863      34444577778888877766544 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCcccCCc
Q 044746           74 ILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPGCEAPE  153 (202)
Q Consensus        74 ~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPe  153 (202)
                      .+++..+..++.|++.||+|||+   ++|+||||||+|||++.++.+|++|||.++........  .....+++.|+|||
T Consensus        97 ~~~~~~~~~~~~q~~~aL~~lH~---~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~--~~~~~~~~~~~~pe  171 (292)
T d1unla_          97 DLDPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRC--YSAEVVTLWYRPPD  171 (292)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSC--CCSCCSCGGGCCHH
T ss_pred             ccchhHHHHHHHHHHHHHHHhhc---CCEeeecccCcccccccCCceeeeecchhhcccCCCcc--ceeeccccchhhhh
Confidence            69999999999999999999999   99999999999999999999999999999876543322  22345688899999


Q ss_pred             ccCCCC-CCchhhHHHHHHHHHHHHcCCCCCcch
Q 044746          154 LWMPYS-VTQKCDVFSFGMLLFEVVGRRRNLEKE  186 (202)
Q Consensus       154 ~~~~~~-~~~~~Diws~G~~l~el~~g~~p~~~~  186 (202)
                      .+.... ++.++||||+||+++||++|+.||...
T Consensus       172 ~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~  205 (292)
T d1unla_         172 VLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPG  205 (292)
T ss_dssp             HHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCC
T ss_pred             HhccCCCCCchhhccccchHHHHHhhCCCCCCCC
Confidence            987654 689999999999999999999997543

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.2e-33  Score=224.49  Aligned_cols=179  Identities=17%  Similarity=0.169  Sum_probs=137.8

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhccccccccc------------cccceEEEEEccCCchhh
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAADNFSNLVGS------------EDTETYIKGFLAMGPFYL   68 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------------~~~~~~~~~~~~~~~l~~   68 (202)
                      ||+|++..+++.||+|+.+.... ......++..|..+....+|++++..            ....+++++++.++.+..
T Consensus        33 V~~~~d~~t~~~vAvK~i~~~~~-~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~~~iv~Ey~~~~l~~~  111 (355)
T d2b1pa1          33 VCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQV  111 (355)
T ss_dssp             EEEEEETTTTEEEEEEEEESTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSEEHHHH
T ss_pred             EEEEEECCCCCEEEEEEEChhhc-CHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCceeEEEEeccchHHHHh
Confidence            79999999999999887543321 12223456778888888899998742            234468889987665554


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceeccccCcccccCCCCCCCc
Q 044746           69 LCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYNREHTHITSTGRRRTPG  148 (202)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~gt~~  148 (202)
                      .  ...+++..++.++.|++.||.|||+   ++|+||||||+|||++.++.++++|||+++.......   .....||+.
T Consensus       112 ~--~~~~~~~~i~~~~~qil~gl~~LH~---~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~~---~~~~~~t~~  183 (355)
T d2b1pa1         112 I--QMELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM---MTPYVVTRY  183 (355)
T ss_dssp             H--TSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCCCC------------------CCT
T ss_pred             h--hcCCCHHHHHHHHHHHHHHHHHhhh---cccccccCCccccccccccceeeechhhhhccccccc---ccccccccc
Confidence            4  3468999999999999999999999   9999999999999999999999999999886544332   234567999


Q ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchhc
Q 044746          149 CEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEIS  188 (202)
Q Consensus       149 y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~~  188 (202)
                      |+|||++.+..++.++||||+||+++||++|++||.+.+.
T Consensus       184 y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~  223 (355)
T d2b1pa1         184 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDY  223 (355)
T ss_dssp             TCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             ccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCH
Confidence            9999999999999999999999999999999999976543

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=7.2e-29  Score=199.02  Aligned_cols=176  Identities=19%  Similarity=0.236  Sum_probs=121.9

Q ss_pred             CCccccCCCcceeehhhhchhhhhccCCcccCCcHHHHHHhc-----------ccccccccccc--------ceEEEEEc
Q 044746            1 MEKPRNRGSTRFITRTIDKSLDAMEMDKPIRFTSPQRMIAAD-----------NFSNLVGSEDT--------ETYIKGFL   61 (202)
Q Consensus         1 v~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~i~~~~~--------~~~~~~~~   61 (202)
                      ||+|++..+++.||+|+.+......    ..+..|..+....           .|++++...+.        ...++...
T Consensus        29 Vy~~~~~~~g~~vAvKvi~~~~~~~----~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~  104 (362)
T d1q8ya_          29 VWLAKDMVNNTHVAMKIVRGDKVYT----EAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFE  104 (362)
T ss_dssp             EEEEEETTTTEEEEEEEECSCHHHH----HHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEEEeccccch----HHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccccceeeeeeec
Confidence            7999999999999988754332211    1122222222222           33444432111        12233333


Q ss_pred             cCC-ch---hhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCC------ceEEeeeecceec
Q 044746           62 AMG-PF---YLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENF------FPKAADFGLAKLY  131 (202)
Q Consensus        62 ~~~-~l---~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~------~~kl~dfgl~~~~  131 (202)
                      ..+ ..   ........+++..+..++.|++.||.|||+  ..+|+||||||+|||++.++      .++++|||.+...
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~--~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~  182 (362)
T d1q8ya_         105 VLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHR--RCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWY  182 (362)
T ss_dssp             CCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH--TTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEET
T ss_pred             ccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhh--hcCcccccCChhHeeeeccCcccccceeeEeeccccccc
Confidence            222 22   222244568999999999999999999997  27899999999999997654      3899999999764


Q ss_pred             cccCcccccCCCCCCCcccCCcccCCCCCCchhhHHHHHHHHHHHHcCCCCCcchh
Q 044746          132 NREHTHITSTGRRRTPGCEAPELWMPYSVTQKCDVFSFGMLLFEVVGRRRNLEKEI  187 (202)
Q Consensus       132 ~~~~~~~~~~~~~gt~~y~aPe~~~~~~~~~~~Diws~G~~l~el~~g~~p~~~~~  187 (202)
                      ...     .....||+.|+|||++....++.++|+||+||++++|++|+.||....
T Consensus       183 ~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~  233 (362)
T d1q8ya_         183 DEH-----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDE  233 (362)
T ss_dssp             TBC-----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC----
T ss_pred             ccc-----cccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCc
Confidence            332     233567999999999999999999999999999999999999997654

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.56  E-value=2.3e-15  Score=109.56  Aligned_cols=69  Identities=17%  Similarity=0.152  Sum_probs=56.9

Q ss_pred             ceEEEEEccCCchhhhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCCCcEEEcCCCceEEeeeecceecc
Q 044746           54 ETYIKGFLAMGPFYLLCKKNILGFGQLREIEVSTSKGIAYLHEECRQKIVHYDIKPESVLLDENFFPKAADFGLAKLYN  132 (202)
Q Consensus        54 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~~~  132 (202)
                      ..++++++++.++..      ++......++.|++.++.|||+   .+|+||||||+|||++.+ .++++|||+|....
T Consensus        85 ~~lvme~~~~~~~~~------l~~~~~~~i~~ql~~~l~~lH~---~giiHrDiKP~NILv~~~-~~~liDFG~a~~~~  153 (191)
T d1zara2          85 NAVLMELIDAKELYR------VRVENPDEVLDMILEEVAKFYH---RGIVHGDLSQYNVLVSEE-GIWIIDFPQSVEVG  153 (191)
T ss_dssp             TEEEEECCCCEEGGG------CCCSCHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEETT-EEEECCCTTCEETT
T ss_pred             CEEEEEeeccccccc------hhhHHHHHHHHHHHHHHHHHhh---CCEEEccCChhheeeeCC-CEEEEECCCcccCC
Confidence            357788888766533      4455667899999999999999   999999999999999865 48999999997654

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.76  E-value=0.00056  Score=50.03  Aligned_cols=29  Identities=14%  Similarity=0.245  Sum_probs=25.2

Q ss_pred             eEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746          102 IVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus       102 iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ++|+|+.|.||+++.++.+.++||+.+..
T Consensus       185 l~HgD~~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T d1j7la_         185 FSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             EECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             EEEeeccCcceeecCCceEEEeechhccc
Confidence            68999999999999877777999987764

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.14  E-value=0.0025  Score=47.89  Aligned_cols=32  Identities=19%  Similarity=0.230  Sum_probs=28.6

Q ss_pred             CCCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746           99 RQKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus        99 ~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      +.++||+|+.++|++++.+...-++||+.+..
T Consensus       182 ~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~~  213 (316)
T d2ppqa1         182 PAGVIHADLFQDNVFFLGDELSGLIDFYFACN  213 (316)
T ss_dssp             CEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             ccccccCCcchhhhhcccccceeEeccccccc
Confidence            47899999999999999988788999998864

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=92.57  E-value=0.019  Score=41.17  Aligned_cols=30  Identities=17%  Similarity=0.247  Sum_probs=25.7

Q ss_pred             CeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746          101 KIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus       101 ~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      .++|+|+.|.||+++.+..+.++||+.+..
T Consensus       176 ~liHgD~~~~Nvl~~~~~~~~iID~~~~~~  205 (255)
T d1nd4a_         176 VVTHGDACLPNIMVENGRFSGFIDCGRLGV  205 (255)
T ss_dssp             EEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             eEEeCCCCCcceEEeCCceEEEEEchhccc
Confidence            379999999999999877778999987754

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=87.88  E-value=0.1  Score=40.13  Aligned_cols=30  Identities=23%  Similarity=0.317  Sum_probs=25.7

Q ss_pred             CCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746          100 QKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus       100 ~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..++|+|+.|.||+++.+. ++++|+..+..
T Consensus       223 ~~LiHGDl~~gNIlv~~~~-~~vID~E~a~~  252 (392)
T d2pula1         223 ETLIHGDLHTGSIFASEHE-TKVIDPEFAFY  252 (392)
T ss_dssp             CEEECSCCCGGGEEECSSC-EEECCCTTCEE
T ss_pred             cceeccCCcCCceeEcCCc-eEEechhhccc
Confidence            4689999999999998764 79999987764

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=87.22  E-value=0.092  Score=39.27  Aligned_cols=30  Identities=20%  Similarity=0.227  Sum_probs=24.1

Q ss_pred             CCCeEEecCCCCcEEEcCCCceEEeeeeccee
Q 044746           99 RQKIVHYDIKPESVLLDENFFPKAADFGLAKL  130 (202)
Q Consensus        99 ~~~iiHrdlk~~nil~~~~~~~kl~dfgl~~~  130 (202)
                      ..++||+|+.+.|||++.+  ..++||+-+..
T Consensus       191 p~~liHgDlh~~NvL~~~~--~~~IDFdd~~~  220 (325)
T d1zyla1         191 TVLRLHGDCHAGNILWRDG--PMFVDLDDARN  220 (325)
T ss_dssp             CCEECCSSCSGGGEEESSS--EEECCCTTCCE
T ss_pred             CceeecCCCCcccEEEeCC--ceEEechhccc
Confidence            4678999999999999743  45899987753