BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044747
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 153 MLFESYGVEGYY--DSYIGSV--NYLLRYFKYR-APEPNETKMGLTPHTDKTMTSIIHQI 207
+L E+ G+E Y +++ GS N+ + Y P+P+ K GL HTD ++ Q
Sbjct: 131 LLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIK-GLRAHTDAGGIILLFQD 189
Query: 208 NHINGLQVQAKDGEWIDVEPSPSSFIVMAGDALMAWGNDRIRPCRHQVIMDNASETRYSL 267
+ ++GLQ+ KDG+WIDV P S +V GD L N + + H+VI R SL
Sbjct: 190 DKVSGLQL-LKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDG-ARXSL 247
Query: 268 GLF 270
F
Sbjct: 248 ASF 250
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 114/272 (41%), Gaps = 22/272 (8%)
Query: 8 KIPVIDLSKQDLKSGTSTWLSTC-KDVRHAFEEFGCFEAIYQKISQEFRSEVLASTEELF 66
++P IDL ++++S C ++++ A ++G I I + V + EE F
Sbjct: 45 QVPTIDL--KNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFF 102
Query: 67 DVPIEIKVKNTSTKPYFEYYGQYTIIPLYESLAIDYPDTRNATQSFTNLMWPAEM--IAF 124
+ +E K K + + + G + + S +++ D F +L +P E ++
Sbjct: 103 SLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDY------FFHLAYPEEKRDLSI 156
Query: 125 GMICPYXXXXXXXXXXXXXXXXDKMVTRMLFESYGVE-GYYDSYIGSVNYLLRYFKY--- 180
P V + L G+E + +G + LL K
Sbjct: 157 WPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYY 216
Query: 181 -RAPEPNETKMGLTPHTD-KTMTSIIHQINHINGLQVQAKDGEWIDVEPSPSSFIVMAGD 238
+ P+P E +G+ HTD +T I+H N + GLQ+ +G+W+ + P S ++ GD
Sbjct: 217 PKCPQP-ELALGVEAHTDVSALTFILH--NMVPGLQL-FYEGKWVTAKCVPDSIVMHIGD 272
Query: 239 ALMAWGNDRIRPCRHQVIMDNASETRYSLGLF 270
L N + + H+ ++ N + R S +F
Sbjct: 273 TLEILSNGKYKSILHRGLV-NKEKVRISWAVF 303
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 114/272 (41%), Gaps = 22/272 (8%)
Query: 8 KIPVIDLSKQDLKSGTSTWLSTC-KDVRHAFEEFGCFEAIYQKISQEFRSEVLASTEELF 66
++P IDL ++++S C ++++ A ++G I I + V + EE F
Sbjct: 46 QVPTIDL--KNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFF 103
Query: 67 DVPIEIKVKNTSTKPYFEYYGQYTIIPLYESLAIDYPDTRNATQSFTNLMWPAEM--IAF 124
+ +E K K + + + G + + S +++ D F +L +P E ++
Sbjct: 104 SLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDY------FFHLAYPEEKRDLSI 157
Query: 125 GMICPYXXXXXXXXXXXXXXXXDKMVTRMLFESYGVE-GYYDSYIGSVNYLLRYFKY--- 180
P V + L G+E + +G + LL K
Sbjct: 158 WPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYY 217
Query: 181 -RAPEPNETKMGLTPHTD-KTMTSIIHQINHINGLQVQAKDGEWIDVEPSPSSFIVMAGD 238
+ P+P E +G+ HTD +T I+H N + GLQ+ +G+W+ + P S ++ GD
Sbjct: 218 PKCPQP-ELALGVEAHTDVSALTFILH--NMVPGLQL-FYEGKWVTAKCVPDSIVMHIGD 273
Query: 239 ALMAWGNDRIRPCRHQVIMDNASETRYSLGLF 270
L N + + H+ ++ N + R S +F
Sbjct: 274 TLEILSNGKYKSILHRGLV-NKEKVRISWAVF 304
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 113/272 (41%), Gaps = 22/272 (8%)
Query: 8 KIPVIDLSKQDLKSGTSTWLSTC-KDVRHAFEEFGCFEAIYQKISQEFRSEVLASTEELF 66
++P IDL ++++S C ++++ A ++G I I + V + EE F
Sbjct: 46 QVPTIDL--KNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFF 103
Query: 67 DVPIEIKVKNTSTKPYFEYYGQYTIIPLYESLAIDYPDTRNATQSFTNLMWPAEM--IAF 124
+ +E K K + + + G + + S +++ D F +L +P E ++
Sbjct: 104 SLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDY------FFHLAYPEEKRDLSI 157
Query: 125 GMICPYXXXXXXXXXXXXXXXXDKMVTRMLFESYGVE-GYYDSYIGSVNYLLRYFKY--- 180
P V + L G+E + +G + LL K
Sbjct: 158 WPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYY 217
Query: 181 -RAPEPNETKMGLTPHTD-KTMTSIIHQINHINGLQVQAKDGEWIDVEPSPSSFIVMAGD 238
+ P+P E +G+ HTD +T I+H N + GLQ+ +G+W+ + P S + GD
Sbjct: 218 PKCPQP-ELALGVEAHTDVSALTFILH--NXVPGLQL-FYEGKWVTAKCVPDSIVXHIGD 273
Query: 239 ALMAWGNDRIRPCRHQVIMDNASETRYSLGLF 270
L N + + H+ ++ N + R S +F
Sbjct: 274 TLEILSNGKYKSILHRGLV-NKEKVRISWAVF 304
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 174 LLRYFKYRAPEPNETKMGL---TPHTDKTMTSIIHQINHINGLQVQAKDGEWIDVEPSPS 230
LLR Y P + + G H D + +++ N GLQV+AKDG W+DV
Sbjct: 151 LLRILHY-PPXTGDEEXGAIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFG 208
Query: 231 SFIVMAGDALMAWGNDRIRPCRHQVIM---DNASETRYSLGLF 270
+ I+ GD L + H+VI + +++R SL LF
Sbjct: 209 NIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLF 251
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/237 (18%), Positives = 85/237 (35%), Gaps = 18/237 (7%)
Query: 30 CKDVRHAFEEFGCFEAIYQKISQEFRSEVLASTEELFDVPIEIKVKNTSTKPYFEYYGQY 89
+++ +FE +G + Q + S + F +P+E K + K Y +
Sbjct: 23 AQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPF 82
Query: 90 TI----------IPLYESLAIDYPDTRNATQSFTNLMWPAEMIAFGMICPYXXXXXXXXX 139
+ + + D P + +WPAE+ AF +
Sbjct: 83 GVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXG 142
Query: 140 XXXXXXXDKMVTRMLFESYGVEGYYDSYIGSVNYLLRYFKYRAPEPNETKMGLTPHTDKT 199
+ + T + E ++ + N +LR Y + T + H D
Sbjct: 143 GKVL---EAIATYLKLE----RDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDIN 195
Query: 200 MTSIIHQINHINGLQVQAKDGEWIDVEPSPSSFIVMAGDALMAWGNDRIRPCRHQVI 256
+++ GL+V +DG+W+ + P P ++ GD L N+ + H+V+
Sbjct: 196 TITLLLGAEE-GGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVV 251
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 148 KMVTRMLFESYGVE--GYYDSYIGSVNYL-LRYF----KYRAPEPNETKMGLTPHTDKTM 200
+ V R + + G E G ++++ L RYF ++R+ E E + + PH D +M
Sbjct: 131 RAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAE--EQPLRMAPHYDLSM 188
Query: 201 TSIIHQINHING-LQVQAK-DGEWIDVEPSPSSFIVMAGDALMAWGNDRIRPCRHQV 255
++I Q NG + +QA+ G + D+ P + +V G +++ RH V
Sbjct: 189 VTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHV 245
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 148 KMVTRMLFESYGVE--GYYDSYIGSVNYL-LRYF----KYRAPEPNETKMGLTPHTDKTM 200
+ V R + + G E G ++++ L RYF ++R+ E E + + PH D +M
Sbjct: 131 RAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAE--EQPLRMAPHYDLSM 188
Query: 201 TSIIHQINHING-LQVQAK-DGEWIDVEPSPSSFIVMAGDALMAWGNDRIRPCRHQV 255
++I Q NG + +QA+ G + D+ P + +V G +++ RH V
Sbjct: 189 VTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHV 245
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 148 KMVTRMLFESYGVE--GYYDSYIGSVNYL-LRYF----KYRAPEPNETKMGLTPHTDKTM 200
+ V R + + G E G ++++ L RYF ++R+ E E + + PH D +M
Sbjct: 131 RAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAE--EQPLRMAPHYDLSM 188
Query: 201 TSIIHQINHING-LQVQAK-DGEWIDVEPSPSSFIVMAGDALMAWGNDRIRPCRHQV 255
++I Q NG + +QA+ G + D+ P + +V G +++ RH V
Sbjct: 189 VTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHV 245
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 148 KMVTRMLFESYGVE--GYYDSYIGSVNYL-LRYF----KYRAPEPNETKMGLTPHTDKTM 200
+ V R + + G E G ++++ L RYF ++R+ E E + + PH D +M
Sbjct: 131 RAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAE--EQPLRMAPHYDLSM 188
Query: 201 TSIIHQINHING-LQVQAK-DGEWIDVEPSPSSFIVMAGDALMAWGNDRIRPCRHQV 255
++I Q NG + +QA+ G + D+ P + +V G +++ RH V
Sbjct: 189 VTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHV 245
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 148 KMVTRMLFESYGVE--GYYDSYIGSVNYL-LRYF----KYRAPEPNETKMGLTPHTDKTM 200
+ V R + + G E G ++++ L RYF ++R+ E E + + PH D +M
Sbjct: 151 RAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAE--EQPLRMAPHYDLSM 208
Query: 201 TSIIHQINHING-LQVQAK-DGEWIDVEPSPSSFIVMAGDALMAWGNDRIRPCRHQV 255
++I Q NG + +QA+ G + D+ P + +V G +++ RH V
Sbjct: 209 VTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHV 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,485,189
Number of Sequences: 62578
Number of extensions: 378961
Number of successful extensions: 869
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 13
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)