BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044748
(602 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 76/202 (37%), Gaps = 30/202 (14%)
Query: 190 LPINMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKA-- 247
LP F L ++ + P + +LP+S+ L L I C LP+ L + A
Sbjct: 119 LPDTXQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 248 -------LQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGXXXXXXXXXXXXXXXXXXX 300
LQ L ++ T IR +P S+ L L+ LK+ N S
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPAIHHLPKLEELDL 236
Query: 301 XHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKV 360
C+ + + I G LK L + DC N LP ++ L
Sbjct: 237 RGCTALRNYPPIFGGRA------------------PLKRLILKDCSNLLTLPLDIHRLTQ 278
Query: 361 LKRLTIDG-TAIREVPKSLSQL 381
L++L + G + +P ++QL
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQL 300
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 78/227 (34%), Gaps = 49/227 (21%)
Query: 34 DCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGIHS-KYLKILNLWGCSNLNNFPEIT 92
D L E + Q LE LTL L +LP I S L+ L++ C L PE
Sbjct: 112 DAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEPL 170
Query: 93 S-----------CHICIFELAEVGIKELPSSIECLSNLRELLIMDCXXXXXXXXXXXXXX 141
+ ++ L GI+ LP+SI L NL+ L I +
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL--------- 221
Query: 142 XXXXXXXXHCSNFKRFLEIPSCNTDGCTGIERLASFK-LKLEGCSSPQSLPINMFSFKSL 200
I L + L L GC++ ++ P L
Sbjct: 222 --------------------------GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 201 PSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKA 247
+ + C N+ +LP + L L++ C N RLP + L A
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 82/249 (32%), Gaps = 33/249 (13%)
Query: 235 FKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGXXXXXXXXXXXXX 294
+ PD+ L LQ T+D + E+P++ Q A L L L +
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNR 151
Query: 295 XXXXXXXHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDE 354
C E P +TD S + L +SL+ ++ + LP
Sbjct: 152 LRELSIRACPELTELPE-PLASTDASGEHQ-----GLVNLQSLR----LEWTGIRSLPAS 201
Query: 355 LGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRXXXXXXXXXXXXXXXXX 414
+ NL+ LK L I + + + ++ L L L L C+ L
Sbjct: 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261
Query: 415 NCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGN 474
+CSN L LD+ + L L + C RLP+ I
Sbjct: 262 DCSNL----------------------LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
Query: 475 SKCLTVLIV 483
+++V
Sbjct: 300 LPANCIILV 308
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 1 LVNLKEIDLSGSESLTKLPDL--SRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEM 58
L L+E+DL G +L P + RA LK L L DC +L I L +LE L L
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAP-LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286
Query: 59 CKSLTSLPTGI 69
C +L+ LP+ I
Sbjct: 287 CVNLSRLPSLI 297
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 1 LVNLKEIDLSGSESLTKLPDLSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCK 60
L NLK + + S P + L+ L L C +L L+ L L+ C
Sbjct: 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264
Query: 61 SLTSLPTGIHS-KYLKILNLWGCSNLNNFPEITS 93
+L +LP IH L+ L+L GC NL+ P + +
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 11/69 (15%)
Query: 509 NKLERLPES-FNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLRYCLKLDSNE 567
N+L+ LP+ F++L+SL+ L+L+ N L+ +PE KLT L LKLD+N+
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYNNQLKRVPE---GAFDKLTELK-------TLKLDNNQ 192
Query: 568 LSEIVKGGW 576
L + +G +
Sbjct: 193 LKRVPEGAF 201
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 508 NNKLERLP-ESFNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLRYCLKLDSN 566
+NKL+ LP F+QL +L L+L N L+ +P + +KLT L+L N
Sbjct: 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY----------N 143
Query: 567 ELSEIVKG 574
EL + KG
Sbjct: 144 ELQSLPKG 151
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 91/229 (39%), Gaps = 30/229 (13%)
Query: 338 KYLEIVDCQNFKRLPDELGNLKVLKRLTI----DGTAIREVPKSLSQLAILRWLKLTN-- 391
++LE+V+C+ F + P LK LKRLT G A EV L L +L L+
Sbjct: 307 QHLELVNCK-FGQFPTL--KLKSLKRLTFTSNKGGNAFSEV-----DLPSLEFLDLSRNG 358
Query: 392 ------CSGLGRXXXXXXXXXXXXXXXXXNCSNFKRFLKIPSCNIDGGTRIERLASFKLR 445
CS SNF ++ + + +++++ F +
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVF 417
Query: 446 LDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIRE--VPEXXXXXXXXXX 503
L L +NL L I L VL + G + +E +P+
Sbjct: 418 LSL---RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 504 XXXXNNKLERL-PESFNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSL 551
+LE+L P +FN LSSL+ L + N L+ +P+ + +LTSL
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD---GIFDRLTSL 520
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 11/67 (16%)
Query: 509 NKLERLPES-FNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLRYCLKLDSNE 567
NKL+ LP FN+L+SL YL L N L+ +P + KLT L L L++N+
Sbjct: 62 NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN---GVFDKLTQLKE-------LALNTNQ 111
Query: 568 LSEIVKG 574
L + G
Sbjct: 112 LQSLPDG 118
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 464 KFKRLPNEIGNS-KCLTVLIVKGTAIREVPEXXXXXXXXXXXXXXN-NKLERLPES-FNQ 520
K + LPN + N LT L + ++ +P N N+L+ LP+ F++
Sbjct: 63 KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDK 122
Query: 521 LSSLEYLQLFENSLEGIPE 539
L+ L+ L+L++N L+ +P+
Sbjct: 123 LTQLKDLRLYQNQLKSVPD 141
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 1 LVNLKEIDLSGSESLTKLPDLSRA-ENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMC 59
L NL ++D+S ++ + L + + NLK L + D + +H + LN LE LTLE C
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 60 KSLTSLPT 67
+LTS+PT
Sbjct: 163 -NLTSIPT 169
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 509 NKLERLPES-FNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLS 554
N+L+ LP F++L++L+ L L EN L+ +P+ + + LT LNL+
Sbjct: 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 31/44 (70%), Gaps = 4/44 (9%)
Query: 509 NKLERLPES-FNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSL 551
N+L+ LPE F++L+ L+ L+L++N L+ +P+ + +LTSL
Sbjct: 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD---GVFDRLTSL 207
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Query: 460 IDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVP-EXXXXXXXXXXXXXXNNKLERLP-ES 517
+D +F +P E+ N K LT++ + I + + N+L +P +
Sbjct: 38 LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT 97
Query: 518 FNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLRYCLKLDSNELSEIVKGGW 576
F+ L SL L L N + +PE + S L+ L + + YC + LS+ VK +
Sbjct: 98 FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC-DCNMQWLSDWVKSEY 155
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 217 SLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTV 253
S K LT +E+ +C N +LPD L +L LQ L +
Sbjct: 486 SWSNLKDLTDVELYNCPNXTQLPDFLYDLPELQSLNI 522
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 334 FKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSL 378
+K L+ +++ + Q + PD L+ L L + G I E+PKSL
Sbjct: 55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 334 FKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSL 378
+K L+ +++ + Q + PD L+ L L + G I E+PKSL
Sbjct: 55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 521 LSSLEYLQLFENSLEG-IPEYLRSLPSKLTSLNLSIDLRY 559
L SL+YL L EN G IP++L LT L+LS + Y
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 304
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 521 LSSLEYLQLFENSLEG-IPEYLRSLPSKLTSLNLSIDLRY 559
L SL+YL L EN G IP++L LT L+LS + Y
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 509 NKLERLPESFNQLSSLEYLQLFENSLEGIPE 539
NKL LP +L+ L +L L +N L+ IP
Sbjct: 122 NKLTELPRGIERLTHLTHLALDQNQLKSIPH 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,658,750
Number of Sequences: 62578
Number of extensions: 514611
Number of successful extensions: 1059
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 988
Number of HSP's gapped (non-prelim): 82
length of query: 602
length of database: 14,973,337
effective HSP length: 104
effective length of query: 498
effective length of database: 8,465,225
effective search space: 4215682050
effective search space used: 4215682050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)