Query 044748
Match_columns 602
No_of_seqs 273 out of 3550
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 06:23:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.2E-51 2.6E-56 467.0 29.9 505 2-558 69-583 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.3E-50 2.9E-55 458.5 28.8 488 1-540 92-590 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 2.9E-40 6.4E-45 304.0 -9.6 485 4-540 47-545 (565)
4 KOG0472 Leucine-rich repeat pr 100.0 3.1E-38 6.7E-43 290.8 -12.4 479 24-562 44-544 (565)
5 KOG4194 Membrane glycoprotein 100.0 7.2E-34 1.6E-38 273.7 6.2 361 118-530 79-447 (873)
6 KOG4194 Membrane glycoprotein 100.0 4.3E-33 9.2E-38 268.4 5.7 346 112-506 97-446 (873)
7 KOG0618 Serine/threonine phosp 100.0 1.7E-34 3.6E-39 292.7 -5.2 479 6-560 2-490 (1081)
8 KOG0618 Serine/threonine phosp 100.0 4.6E-34 1E-38 289.5 -5.2 473 30-581 3-496 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 4.8E-31 1E-35 256.2 -4.9 366 114-534 4-374 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1E-30 2.3E-35 253.9 -3.9 362 71-511 6-374 (1255)
11 PLN03210 Resistant to P. syrin 99.9 4.4E-26 9.5E-31 258.4 25.8 334 136-532 553-903 (1153)
12 PLN03210 Resistant to P. syrin 99.9 4.5E-24 9.7E-29 242.1 23.9 310 73-422 590-909 (1153)
13 KOG4237 Extracellular matrix p 99.8 8.4E-22 1.8E-26 182.4 -3.8 390 4-416 69-498 (498)
14 KOG4237 Extracellular matrix p 99.8 1.9E-21 4.2E-26 180.0 -4.2 397 106-554 58-496 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 1.2E-18 2.7E-23 183.6 15.5 263 199-541 202-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.3E-18 5E-23 181.6 15.9 256 223-558 202-457 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 1.4E-17 3.1E-22 176.9 11.0 248 222-536 178-429 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 5.3E-17 1.2E-21 172.5 12.4 245 248-558 180-427 (754)
19 cd00116 LRR_RI Leucine-rich re 99.6 4E-17 8.6E-22 161.6 2.7 205 334-556 80-317 (319)
20 cd00116 LRR_RI Leucine-rich re 99.6 2.7E-17 5.8E-22 162.8 1.4 272 203-534 3-319 (319)
21 KOG0617 Ras suppressor protein 99.6 6.2E-18 1.3E-22 138.9 -2.7 165 356-544 30-195 (264)
22 KOG0617 Ras suppressor protein 99.5 1.4E-16 2.9E-21 131.1 -3.7 178 334-536 32-213 (264)
23 KOG1259 Nischarin, modulator o 99.2 8.4E-12 1.8E-16 112.5 3.3 176 334-537 213-389 (490)
24 KOG3207 Beta-tubulin folding c 99.1 8.6E-12 1.9E-16 118.3 0.3 183 334-538 120-317 (505)
25 KOG1259 Nischarin, modulator o 99.1 3.4E-11 7.3E-16 108.6 1.6 135 356-540 281-417 (490)
26 KOG4658 Apoptotic ATPase [Sign 99.1 2.8E-10 6E-15 123.7 7.8 157 18-181 516-677 (889)
27 PF14580 LRR_9: Leucine-rich r 99.0 1.9E-10 4E-15 99.8 4.6 99 451-552 41-146 (175)
28 KOG0532 Leucine-rich repeat (L 99.0 1.3E-11 2.9E-16 120.8 -3.9 179 335-541 75-253 (722)
29 KOG1909 Ran GTPase-activating 99.0 3.5E-11 7.6E-16 111.1 -1.1 86 218-303 26-130 (382)
30 KOG1909 Ran GTPase-activating 99.0 6.2E-11 1.3E-15 109.5 -0.8 89 193-281 208-310 (382)
31 PF14580 LRR_9: Leucine-rich r 99.0 1E-09 2.2E-14 95.3 6.1 83 449-531 61-149 (175)
32 KOG3207 Beta-tubulin folding c 98.9 2E-10 4.4E-15 109.1 1.5 181 220-418 119-313 (505)
33 KOG4658 Apoptotic ATPase [Sign 98.9 5.4E-10 1.2E-14 121.5 4.3 121 5-127 526-652 (889)
34 COG4886 Leucine-rich repeat (L 98.9 9.2E-10 2E-14 112.2 5.2 179 334-539 115-294 (394)
35 COG4886 Leucine-rich repeat (L 98.9 2.1E-09 4.5E-14 109.6 7.7 197 273-516 97-294 (394)
36 KOG0532 Leucine-rich repeat (L 98.9 1E-10 2.2E-15 114.8 -3.1 154 334-515 97-250 (722)
37 KOG2120 SCF ubiquitin ligase, 98.8 8.2E-11 1.8E-15 106.1 -5.6 173 3-181 186-372 (419)
38 PF13855 LRR_8: Leucine rich r 98.8 3.2E-09 6.8E-14 75.6 3.6 59 476-534 1-61 (61)
39 PLN03150 hypothetical protein; 98.8 6.3E-09 1.4E-13 111.0 7.2 108 453-560 419-529 (623)
40 KOG4341 F-box protein containi 98.8 1.7E-10 3.6E-15 109.1 -4.6 270 4-280 140-437 (483)
41 PLN03150 hypothetical protein; 98.6 1E-07 2.3E-12 101.7 8.1 110 407-538 419-532 (623)
42 KOG2120 SCF ubiquitin ligase, 98.6 1.2E-09 2.6E-14 98.7 -5.7 156 246-417 185-349 (419)
43 PF13855 LRR_8: Leucine rich r 98.5 8.9E-08 1.9E-12 68.1 4.2 58 2-60 1-60 (61)
44 KOG4341 F-box protein containi 98.5 4.5E-09 9.7E-14 99.7 -3.6 270 1-276 163-459 (483)
45 PRK15386 type III secretion pr 98.5 6.4E-07 1.4E-11 87.6 9.4 163 358-568 51-218 (426)
46 KOG0531 Protein phosphatase 1, 98.5 1.7E-08 3.7E-13 102.9 -1.6 174 334-536 94-269 (414)
47 KOG0531 Protein phosphatase 1, 98.5 1.9E-08 4.2E-13 102.5 -1.5 54 337-392 142-196 (414)
48 KOG1859 Leucine-rich repeat pr 98.4 2.9E-08 6.2E-13 100.6 -0.6 111 447-562 182-295 (1096)
49 PF12799 LRR_4: Leucine Rich r 98.4 3.6E-07 7.7E-12 59.2 3.2 37 500-536 2-38 (44)
50 PF12799 LRR_4: Leucine Rich r 98.3 7.8E-07 1.7E-11 57.6 3.6 40 476-515 1-40 (44)
51 KOG1859 Leucine-rich repeat pr 98.3 2E-08 4.3E-13 101.7 -5.8 177 334-539 108-296 (1096)
52 KOG4579 Leucine-rich repeat (L 98.2 1.3E-07 2.8E-12 75.7 -1.4 101 454-555 29-132 (177)
53 KOG4579 Leucine-rich repeat (L 98.1 2.3E-07 4.9E-12 74.3 -2.3 93 448-541 49-142 (177)
54 PRK15386 type III secretion pr 98.1 1.8E-05 3.8E-10 77.7 9.3 135 334-510 51-188 (426)
55 KOG2982 Uncharacterized conser 98.0 1.4E-06 3E-11 79.4 -0.1 184 334-536 70-263 (418)
56 KOG2982 Uncharacterized conser 97.9 4.7E-06 1E-10 76.0 2.0 79 334-412 198-285 (418)
57 COG5238 RNA1 Ran GTPase-activa 97.8 3.6E-06 7.8E-11 75.7 0.1 193 334-536 29-256 (388)
58 KOG3665 ZYG-1-like serine/thre 97.7 5.2E-06 1.1E-10 88.5 -0.8 107 293-416 122-230 (699)
59 COG5238 RNA1 Ran GTPase-activa 97.7 7.4E-06 1.6E-10 73.7 -0.7 172 112-303 87-282 (388)
60 KOG3665 ZYG-1-like serine/thre 97.5 3.1E-05 6.7E-10 82.7 1.3 14 498-511 249-262 (699)
61 KOG1644 U2-associated snRNP A' 97.4 0.00034 7.5E-09 60.6 5.4 104 198-303 42-150 (233)
62 KOG1644 U2-associated snRNP A' 97.3 0.00039 8.4E-09 60.2 5.2 65 472-536 60-127 (233)
63 KOG2739 Leucine-rich acidic nu 96.9 0.00059 1.3E-08 61.8 2.7 81 451-531 64-152 (260)
64 KOG2123 Uncharacterized conser 96.7 0.00014 3E-09 66.0 -2.8 99 450-552 17-123 (388)
65 KOG1947 Leucine rich repeat pr 96.7 0.00031 6.8E-09 73.9 -0.9 110 197-306 187-308 (482)
66 KOG1947 Leucine rich repeat pr 96.6 0.00011 2.3E-09 77.4 -4.9 130 21-150 184-330 (482)
67 KOG2739 Leucine-rich acidic nu 96.4 0.0022 4.9E-08 58.1 2.8 61 21-83 39-102 (260)
68 PF00560 LRR_1: Leucine Rich R 96.3 0.0021 4.5E-08 34.5 1.0 17 501-517 2-18 (22)
69 PF13306 LRR_5: Leucine rich r 96.2 0.024 5.1E-07 47.2 8.0 57 472-531 54-112 (129)
70 KOG2123 Uncharacterized conser 96.2 0.00026 5.6E-09 64.3 -4.3 80 3-86 20-102 (388)
71 PF13306 LRR_5: Leucine rich r 96.2 0.022 4.7E-07 47.4 7.6 87 326-415 3-90 (129)
72 PF00560 LRR_1: Leucine Rich R 95.6 0.0059 1.3E-07 32.7 1.1 21 477-497 1-21 (22)
73 PF13504 LRR_7: Leucine rich r 95.5 0.0083 1.8E-07 29.7 1.3 11 501-511 3-13 (17)
74 PF13504 LRR_7: Leucine rich r 95.4 0.0086 1.9E-07 29.6 1.1 17 522-538 1-17 (17)
75 smart00370 LRR Leucine-rich re 94.2 0.04 8.8E-07 30.8 2.0 20 522-541 2-21 (26)
76 smart00369 LRR_TYP Leucine-ric 94.2 0.04 8.8E-07 30.8 2.0 20 522-541 2-21 (26)
77 KOG0473 Leucine-rich repeat pr 93.9 0.0016 3.5E-08 57.7 -6.1 87 448-535 38-124 (326)
78 KOG4308 LRR-containing protein 93.5 0.00059 1.3E-08 69.9 -11.2 186 337-536 89-304 (478)
79 KOG4308 LRR-containing protein 92.6 0.0011 2.3E-08 68.0 -10.8 159 360-536 88-276 (478)
80 smart00369 LRR_TYP Leucine-ric 92.2 0.13 2.8E-06 28.7 2.1 20 498-517 1-20 (26)
81 smart00370 LRR Leucine-rich re 92.2 0.13 2.8E-06 28.7 2.1 20 498-517 1-20 (26)
82 KOG0473 Leucine-rich repeat pr 91.9 0.0055 1.2E-07 54.4 -5.7 85 471-556 37-121 (326)
83 KOG3864 Uncharacterized conser 90.1 0.08 1.7E-06 46.4 -0.3 81 25-105 101-185 (221)
84 smart00364 LRR_BAC Leucine-ric 88.1 0.29 6.4E-06 27.1 1.1 18 522-539 2-19 (26)
85 KOG3864 Uncharacterized conser 87.4 0.12 2.6E-06 45.3 -1.0 80 4-83 103-187 (221)
86 PF13516 LRR_6: Leucine Rich r 86.2 0.42 9.1E-06 26.0 1.1 18 25-42 2-19 (24)
87 smart00365 LRR_SD22 Leucine-ri 80.9 1.4 2.9E-05 24.6 1.7 15 500-514 3-17 (26)
88 smart00368 LRR_RI Leucine rich 76.6 1.3 2.7E-05 25.3 0.8 15 522-536 2-16 (28)
89 KOG4242 Predicted myosin-I-bin 70.2 15 0.00033 37.1 6.9 34 452-485 354-389 (553)
90 smart00367 LRR_CC Leucine-rich 62.4 5 0.00011 22.2 1.2 13 24-36 1-13 (26)
91 KOG3763 mRNA export factor TAP 53.5 6.7 0.00015 40.3 1.3 14 334-347 217-230 (585)
92 KOG3763 mRNA export factor TAP 51.7 8.3 0.00018 39.7 1.6 62 475-536 217-284 (585)
93 TIGR00864 PCC polycystin catio 51.5 9.3 0.0002 47.4 2.2 30 482-511 1-31 (2740)
94 TIGR00864 PCC polycystin catio 30.9 22 0.00049 44.3 1.1 32 505-536 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-51 Score=467.03 Aligned_cols=505 Identities=22% Similarity=0.294 Sum_probs=444.2
Q ss_pred CCCcEEecCCCCcCcCCcc-ccCCCCCcEEEcCCCcchhcchhhhc-cCCCCcEEeccCCccccCCCCccCccccceecc
Q 044748 2 VNLKEIDLSGSESLTKLPD-LSRAENLKILRLDDCLSLTETHSSIQ-YLNKLEFLTLEMCKSLTSLPTGIHSKYLKILNL 79 (602)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l 79 (602)
.++++|+|+++.+.+.++. |..+++|++|+|++|.+.+.+|..+. .+++|++|++++|...+.+|.. .+++|++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~l~~L~~L~L 147 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG-SIPNLETLDL 147 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc-ccCCCCEEEC
Confidence 3688999999987777777 99999999999999998888887655 8999999999999766666643 6889999999
Q ss_pred cCCCCCCCCcccccccccchhccccc---cccCCccccCcccCceEecccccccccccccccccCCccEEEeeCCCCccc
Q 044748 80 WGCSNLNNFPEITSCHICIFELAEVG---IKELPSSIECLSNLRELLIMDCSELESISSSIFKLKSLKSIVISHCSNFKR 156 (602)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~L~~L~l~~---~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 156 (602)
++|.+.+.+|..++.+++|++|++++ .+.+|..++++++|++|++++|.+.+.+|..+..+++|++|++++|.+...
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 227 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence 99998889999999999999999988 568899999999999999999988888999999999999999999998888
Q ss_pred cccCCCCCCCCCcCcccceeeecccCCCCCCccccccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCc
Q 044748 157 FLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFK 236 (602)
Q Consensus 157 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 236 (602)
.| ..+..+++|++|++++ +.....+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+
T Consensus 228 ~p-------~~l~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 228 IP-------YEIGGLTSLNHLDLVY--NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CC-------hhHhcCCCCCEEECcC--ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 88 8899999999999998 34445788889999999999999999989999999999999999999999988
Q ss_pred cCCcccCCCCCCcEEEcCccccc-cccccccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCC
Q 044748 237 RLPDELGNLKALQRLTVDRTAIR-EVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSG 315 (602)
Q Consensus 237 ~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 315 (602)
.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.. +
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l-~-------- 369 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL-T-------- 369 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee-E--------
Confidence 99999999999999999999887 6777789999999999999998888999999999999999998632 2
Q ss_pred CCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccc-cCCccccccccCcEEeccCCCC
Q 044748 316 NTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIR-EVPKSLSQLAILRWLKLTNCSG 394 (602)
Q Consensus 316 ~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~l~~~~~~l~~L~~L~l~~~~~ 394 (602)
+.++..+.. +++|+.+++++|.+.+.+|..+..+++|+.|++++|.++ .+|..+..+++|+.+++++|.+
T Consensus 370 --------~~~p~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 370 --------GEIPEGLCS-SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440 (968)
T ss_pred --------eeCChhHhC-cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcc
Confidence 133443333 788999999999988889988999999999999999998 6788888999999999999999
Q ss_pred CCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhC
Q 044748 395 LGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGN 474 (602)
Q Consensus 395 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 474 (602)
.+.++..+..+++|++|++++|.+.+.+|. .+ ..++|+.|++++|.+.+..|..+..
T Consensus 441 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~----------------------~~-~~~~L~~L~ls~n~l~~~~~~~~~~ 497 (968)
T PLN00113 441 QGRINSRKWDMPSLQMLSLARNKFFGGLPD----------------------SF-GSKRLENLDLSRNQFSGAVPRKLGS 497 (968)
T ss_pred cCccChhhccCCCCcEEECcCceeeeecCc----------------------cc-ccccceEEECcCCccCCccChhhhh
Confidence 888888888999999999999988877765 22 3468899999999988888888889
Q ss_pred CcccceEeecCcccc-cCcccccCCCCCcEEEccCCcc-cccchhhhcCCCCceeecccccccC-Cchhhhccccccccc
Q 044748 475 SKCLTVLIVKGTAIR-EVPESLGQLSSLESLVLSNNKL-ERLPESFNQLSSLEYLQLFENSLEG-IPEYLRSLPSKLTSL 551 (602)
Q Consensus 475 ~~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~l-~~l~~~l~~l~~L~~L~l~~N~l~~-~~~~l~~~~~~L~~L 551 (602)
+++|+.|++++|.+. .+|..+.++++|+.|++++|.+ +.+|..+..+++|+.|++++|++++ +|..+..++ +|+.+
T Consensus 498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~l 576 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE-SLVQV 576 (968)
T ss_pred hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCc-ccCEE
Confidence 999999999999986 7788888899999999999998 5778888899999999999999987 888888776 88888
Q ss_pred ccceeec
Q 044748 552 NLSIDLR 558 (602)
Q Consensus 552 ~l~~~~~ 558 (602)
+++.|..
T Consensus 577 ~ls~N~l 583 (968)
T PLN00113 577 NISHNHL 583 (968)
T ss_pred eccCCcc
Confidence 8876654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-50 Score=458.46 Aligned_cols=488 Identities=20% Similarity=0.262 Sum_probs=439.7
Q ss_pred CCCCcEEecCCCCcCcCCcc--ccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCcc-Ccccccee
Q 044748 1 LVNLKEIDLSGSESLTKLPD--LSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGI-HSKYLKIL 77 (602)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~~~L~~L 77 (602)
+++|++|+|++|++.+.+|. +..+++|++|++++|.+.+.+|. +.+++|++|++++|...+.+|..+ .+++|++|
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence 57899999999998778886 67999999999999998887774 468899999999997767888888 99999999
Q ss_pred cccCCCCCCCCcccccccccchhccccc---cccCCccccCcccCceEecccccccccccccccccCCccEEEeeCCCCc
Q 044748 78 NLWGCSNLNNFPEITSCHICIFELAEVG---IKELPSSIECLSNLRELLIMDCSELESISSSIFKLKSLKSIVISHCSNF 154 (602)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~---~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 154 (602)
++++|.+.+.+|..+.++++|++|++++ .+.+|..++++++|+.|++++|...+.+|..+..+++|++|++++|.+.
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 9999998889999999999999999988 5678999999999999999999888889999999999999999999988
Q ss_pred cccccCCCCCCCCCcCcccceeeecccCCCCCCccccccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCC
Q 044748 155 KRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQN 234 (602)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 234 (602)
...| ..+..+++|++|++++ +.....+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++.+|.+
T Consensus 250 ~~~p-------~~l~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 250 GPIP-------SSLGNLKNLQYLFLYQ--NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred cccC-------hhHhCCCCCCEEECcC--CeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 8888 8899999999999998 344457788888999999999999999899999999999999999999999
Q ss_pred CccCCcccCCCCCCcEEEcCccccc-cccccccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCC
Q 044748 235 FKRLPDELGNLKALQRLTVDRTAIR-EVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIP 313 (602)
Q Consensus 235 ~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 313 (602)
.+..|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|....
T Consensus 321 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~------ 394 (968)
T PLN00113 321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG------ 394 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc------
Confidence 9999999999999999999999987 778888999999999999999888899999999999999999864222
Q ss_pred CCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccc-cCCccccccccCcEEeccCC
Q 044748 314 SGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIR-EVPKSLSQLAILRWLKLTNC 392 (602)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~l~~~~~~l~~L~~L~l~~~ 392 (602)
.+|..+. .+++|+.|++++|.+.+..|..+..++.|+.|++++|.++ .++..+..+++|+.|++++|
T Consensus 395 -----------~~p~~~~-~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 395 -----------EIPKSLG-ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462 (968)
T ss_pred -----------cCCHHHh-CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCc
Confidence 3443333 3889999999999998889999999999999999999998 56666778999999999999
Q ss_pred CCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhh
Q 044748 393 SGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEI 472 (602)
Q Consensus 393 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 472 (602)
.+.+.+|..+ ..++|+.|++++|.+.+.+|. .+..+++|+.|++++|.+.+.+|..+
T Consensus 463 ~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~----------------------~~~~l~~L~~L~Ls~N~l~~~~p~~~ 519 (968)
T PLN00113 463 KFFGGLPDSF-GSKRLENLDLSRNQFSGAVPR----------------------KLGSLSELMQLKLSENKLSGEIPDEL 519 (968)
T ss_pred eeeeecCccc-ccccceEEECcCCccCCccCh----------------------hhhhhhccCEEECcCCcceeeCChHH
Confidence 9988888654 568999999999999888776 67788999999999999999999999
Q ss_pred hCCcccceEeecCcccc-cCcccccCCCCCcEEEccCCcc-cccchhhhcCCCCceeecccccccC-Cchh
Q 044748 473 GNSKCLTVLIVKGTAIR-EVPESLGQLSSLESLVLSNNKL-ERLPESFNQLSSLEYLQLFENSLEG-IPEY 540 (602)
Q Consensus 473 ~~~~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~l-~~l~~~l~~l~~L~~L~l~~N~l~~-~~~~ 540 (602)
..+++|++|++++|.++ .+|..+..+++|+.|++++|++ ..+|..+..+++|+.|++++|++.+ +|+.
T Consensus 520 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 99999999999999997 6788899999999999999999 6899999999999999999999998 8754
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.9e-40 Score=304.05 Aligned_cols=485 Identities=22% Similarity=0.298 Sum_probs=366.4
Q ss_pred CcEEecCCCCcCcCCccccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCcc-CccccceecccCC
Q 044748 4 LKEIDLSGSESLTKLPDLSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGI-HSKYLKILNLWGC 82 (602)
Q Consensus 4 L~~L~l~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~~~L~~L~l~~~ 82 (602)
++.|.+++|.+....+++.++..|++|++++|+ ...+|++++.+..++.++.++| ....+|..+ ..+.|+.+++++|
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~-l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNK-LSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccch-hhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhcccc
Confidence 567889999843344449999999999999988 5667889999999999999999 778899988 8999999999998
Q ss_pred CCCCCCcccccccccchhccccc--cccCCccccCcccCceEecccccccccccccccccCCccEEEeeCCCCccccccC
Q 044748 83 SNLNNFPEITSCHICIFELAEVG--IKELPSSIECLSNLRELLIMDCSELESISSSIFKLKSLKSIVISHCSNFKRFLEI 160 (602)
Q Consensus 83 ~~~~~~~~~~~~~~~L~~L~l~~--~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 160 (602)
. ...+++.++.+..|+.++..+ +..+|..+..+.++..+++.+|......|. .-.++.|++++...| ..+.+|
T Consensus 125 ~-~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N-~L~tlP-- 199 (565)
T KOG0472|consen 125 E-LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSN-LLETLP-- 199 (565)
T ss_pred c-eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchh-hhhcCC--
Confidence 7 456788899999999999888 899999999999999999999965554444 444899999999887 666778
Q ss_pred CCCCCCCCcCcccceeeecccCCCCCCccccccccCCCCCcccccccCCCCcccccch-hccccccEEeeeccCCCccCC
Q 044748 161 PSCNTDGCTGIERLASFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCPNIESLPSSL-CMFKSLTSLEIVDCQNFKRLP 239 (602)
Q Consensus 161 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~ 239 (602)
..++++.+|+.|++.. +++..+| .+.+|..|++++++.|.+ +.+|+.. ..++++.+||+++|++. ..|
T Consensus 200 -----~~lg~l~~L~~LyL~~---Nki~~lP-ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdNklk-e~P 268 (565)
T KOG0472|consen 200 -----PELGGLESLELLYLRR---NKIRFLP-EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDNKLK-EVP 268 (565)
T ss_pred -----hhhcchhhhHHHHhhh---cccccCC-CCCccHHHHHHHhcccHH-HhhHHHHhcccccceeeeccccccc-cCc
Confidence 8999999999999998 7777777 688899999999999854 5566554 58899999999998754 567
Q ss_pred cccCCCCCCcEEEcCccccccccccccccccccEEeecCCCCcccccccccc------CCCCcEEEeecCCCccccccCC
Q 044748 240 DELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFK------LKSLKSIVISHCSNFKRFLEIP 313 (602)
Q Consensus 240 ~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------l~~L~~L~l~~~~~~~~~~~~~ 313 (602)
+.+.-+.+|++||+++|.|+.+|..++++ .|+.|.+.+|++.+. ...+-+ ++.|+.-. .|..+.. +
T Consensus 269 de~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~--~~dglS~----s 340 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKI--KDDGLSQ----S 340 (565)
T ss_pred hHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhh--ccCCCCC----C
Confidence 88888999999999999999999999999 999999999986542 122211 22333310 1111110 0
Q ss_pred CCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCC---CccEEEecCcccccCCccccccccCcEEecc
Q 044748 314 SGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLK---VLKRLTIDGTAIREVPKSLSQLAILRWLKLT 390 (602)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~ 390 (602)
.+......-....+.......-+.+.|++++-+ .+.+|+...... -++.++++.|.+.++|..+..+..+...-+.
T Consensus 341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~l 419 (565)
T KOG0472|consen 341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVL 419 (565)
T ss_pred cccccccCCCCCCcccchhhhhhhhhhcccccc-cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHh
Confidence 000000000011111112224567778888755 455564433322 3778899999999999877777666655444
Q ss_pred CCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCCh
Q 044748 391 NCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPN 470 (602)
Q Consensus 391 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 470 (602)
.++..+.+|..++.+++|..|++++| ....+|. .++.+..|+.|+++.|. ....|.
T Consensus 420 snn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~----------------------e~~~lv~Lq~LnlS~Nr-Fr~lP~ 475 (565)
T KOG0472|consen 420 SNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPE----------------------EMGSLVRLQTLNLSFNR-FRMLPE 475 (565)
T ss_pred hcCccccchHHHHhhhcceeeecccc-hhhhcch----------------------hhhhhhhhheecccccc-cccchH
Confidence 44466777878888899999999885 4455555 66777778899998874 567788
Q ss_pred hhhCCcccceEeecCcccccCccc-ccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCchh
Q 044748 471 EIGNSKCLTVLIVKGTAIREVPES-LGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPEY 540 (602)
Q Consensus 471 ~l~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~ 540 (602)
+......++.+-.++|++.+++.. +.++.+|.+||+.+|.+..+|..++++++|++|++.+|+|. .|..
T Consensus 476 ~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~ 545 (565)
T KOG0472|consen 476 CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPRH 545 (565)
T ss_pred HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC-CCHH
Confidence 888888888888888899888755 88888999999999999999988889999999999999887 4544
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.1e-38 Score=290.77 Aligned_cols=479 Identities=23% Similarity=0.279 Sum_probs=378.5
Q ss_pred CCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCcc-CccccceecccCCCCCCCCcccccccccchhcc
Q 044748 24 AENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGI-HSKYLKILNLWGCSNLNNFPEITSCHICIFELA 102 (602)
Q Consensus 24 l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 102 (602)
-..|+.|.+++|.+. .+-+.+.++..|.+|++++| ...++|+.+ .+..++.+++++|. ..++|..+.....|..++
T Consensus 44 qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLD 120 (565)
T ss_pred hcchhhhhhccCchh-hccHhhhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhh
Confidence 456888999998854 44458888999999999999 778888888 99999999999986 678899999999999999
Q ss_pred ccc--cccCCccccCcccCceEecccccccccccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecc
Q 044748 103 EVG--IKELPSSIECLSNLRELLIMDCSELESISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLK 180 (602)
Q Consensus 103 l~~--~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 180 (602)
++. ..++|.+++.+..+..++..+|. ....|..+..+.++..+++.+|.+....| ..+. ++.|++|+..
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~-------~~i~-m~~L~~ld~~ 191 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPE-------NHIA-MKRLKHLDCN 191 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCH-------HHHH-HHHHHhcccc
Confidence 988 88999999999999999999984 45667778899999999999997765544 3444 9999999988
Q ss_pred cCCCCCCccccccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCcccccc
Q 044748 181 LEGCSSPQSLPINMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIRE 260 (602)
Q Consensus 181 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 260 (602)
. +.++.+|..++.+.+|..|++..|.+ ..+| .|..|..|+.+.+..|++.........+++++..||+..|++++
T Consensus 192 ~---N~L~tlP~~lg~l~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke 266 (565)
T KOG0472|consen 192 S---NLLETLPPELGGLESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE 266 (565)
T ss_pred h---hhhhcCChhhcchhhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc
Confidence 7 78899999999999999999999865 4455 68889999999998876544333445689999999999999999
Q ss_pred ccccccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEE
Q 044748 261 VPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYL 340 (602)
Q Consensus 261 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L 340 (602)
+|+.+.-+.+|++|++++|. ....|..++++ .|+.|.+.||+.-+.-.++-.+... + -|++|
T Consensus 267 ~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~------~----------vLKyL 328 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQ------E----------VLKYL 328 (565)
T ss_pred CchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHHHHHHcccHH------H----------HHHHH
Confidence 99999899999999999985 55678889998 9999999997654322111111000 0 01111
Q ss_pred E-------EecCCC---C-ccCC----ccccCCCCccEEEecCcccccCCcccccccc---CcEEeccCCCCCCccCccc
Q 044748 341 E-------IVDCQN---F-KRLP----DELGNLKVLKRLTIDGTAIREVPKSLSQLAI---LRWLKLTNCSGLGRISSSI 402 (602)
Q Consensus 341 ~-------l~~~~~---~-~~~~----~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~---L~~L~l~~~~~~~~~~~~~ 402 (602)
. ++.... . ...+ .......+.+.|++++-+++.+|..+..... ...++++.|++ .++|..+
T Consensus 329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL-~elPk~L 407 (565)
T KOG0472|consen 329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQL-CELPKRL 407 (565)
T ss_pred HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchH-hhhhhhh
Confidence 0 110000 0 0111 1123455788999999999999976655444 78899999854 5788877
Q ss_pred cCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEe
Q 044748 403 FKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLI 482 (602)
Q Consensus 403 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 482 (602)
..+..+.+.-+..++....+|. .++.+++|..|++++|. ...+|..+..+-.|+.|+
T Consensus 408 ~~lkelvT~l~lsnn~isfv~~----------------------~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~Ln 464 (565)
T KOG0472|consen 408 VELKELVTDLVLSNNKISFVPL----------------------ELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLN 464 (565)
T ss_pred HHHHHHHHHHHhhcCccccchH----------------------HHHhhhcceeeecccch-hhhcchhhhhhhhhheec
Confidence 7777776666666666666666 78899999999999965 567888888999999999
Q ss_pred ecCcccccCcccccCCCCCcEEEccCCcccccchh-hhcCCCCceeecccccccCCchhhhcccccccccccceeecccc
Q 044748 483 VKGTAIREVPESLGQLSSLESLVLSNNKLERLPES-FNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLRYCL 561 (602)
Q Consensus 483 L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~~~~~ 561 (602)
++.|++..+|.+......++.+-.++|+++.++.. +.++..|..||+.+|.+..+|+.+..+. +|+.|++++|++.-|
T Consensus 465 lS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgnmt-nL~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 465 LSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMT-NLRHLELDGNPFRQP 543 (565)
T ss_pred ccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhcccc-ceeEEEecCCccCCC
Confidence 99999999999988888999999999999999875 9999999999999999999999888887 788877777666544
Q ss_pred c
Q 044748 562 K 562 (602)
Q Consensus 562 ~ 562 (602)
+
T Consensus 544 r 544 (565)
T KOG0472|consen 544 R 544 (565)
T ss_pred H
Confidence 3
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-34 Score=273.74 Aligned_cols=361 Identities=16% Similarity=0.163 Sum_probs=227.9
Q ss_pred cCceEecccccccccccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecccCCCCCCcccc-ccccC
Q 044748 118 NLRELLIMDCSELESISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLP-INMFS 196 (602)
Q Consensus 118 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~ 196 (602)
.-+.|++++|++....+..|..+++|+++++..|.+ ..+| .......+++.|+|.+ +.+.++. +.+..
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-t~IP-------~f~~~sghl~~L~L~~---N~I~sv~se~L~~ 147 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-TRIP-------RFGHESGHLEKLDLRH---NLISSVTSEELSA 147 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchh-hhcc-------cccccccceeEEeeec---cccccccHHHHHh
Confidence 345688888866555556677788888888877743 3455 4444556677788777 3333332 34555
Q ss_pred CCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCcccccccccc-ccccccccEEe
Q 044748 197 FKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPES-LGQLAILRRLK 275 (602)
Q Consensus 197 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~ 275 (602)
++.|+.|+++.|.+.+.--..+..-.++++|++.+|+++..-...|.++.+|..|.+++|+++.+|.. |..+++|+.|+
T Consensus 148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred HhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 77777777777755544444455556777778777777766666777777777777777777777654 55577777777
Q ss_pred ecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccc
Q 044748 276 LTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDEL 355 (602)
Q Consensus 276 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 355 (602)
+..|.+...-...|.++++|+.|.+..| .+ ..+..+.+.++.++++|++..|++...-..|+
T Consensus 228 LnrN~irive~ltFqgL~Sl~nlklqrN-~I-----------------~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 228 LNRNRIRIVEGLTFQGLPSLQNLKLQRN-DI-----------------SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred ccccceeeehhhhhcCchhhhhhhhhhc-Cc-----------------ccccCcceeeecccceeecccchhhhhhcccc
Confidence 7777554332345666777777777663 22 25555556667777777777777666666667
Q ss_pred cCCCCccEEEecCcccccCC-ccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCc
Q 044748 356 GNLKVLKRLTIDGTAIREVP-KSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGT 434 (602)
Q Consensus 356 ~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 434 (602)
.+++.|+.|++++|.|..+. ++++..++|++|++++|.+..--++.|..+..|++|.++.|.+...-..
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~---------- 359 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEG---------- 359 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhh----------
Confidence 77777777777777776443 4455567777777777766554555666666666666666544322222
Q ss_pred chhhhhhhccccchhccCCCCeEEeeccccccCC---ChhhhCCcccceEeecCcccccCc-ccccCCCCCcEEEccCCc
Q 044748 435 RIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRL---PNEIGNSKCLTVLIVKGTAIREVP-ESLGQLSSLESLVLSNNK 510 (602)
Q Consensus 435 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~ 510 (602)
.+..+++|++|+|.+|.+...+ ...+.++++|+.|++-+|+++.|| .+|.++.+|+.|||.+|.
T Consensus 360 ------------af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 360 ------------AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred ------------HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 4555666666666666554422 223555666666666666666665 456666666666666666
Q ss_pred cccc-chhhhcCCCCceeecc
Q 044748 511 LERL-PESFNQLSSLEYLQLF 530 (602)
Q Consensus 511 l~~l-~~~l~~l~~L~~L~l~ 530 (602)
|.+| |.+|..+ .|++|-++
T Consensus 428 iaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 428 IASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ceeecccccccc-hhhhhhhc
Confidence 6444 3445555 56665443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=4.3e-33 Score=268.44 Aligned_cols=346 Identities=17% Similarity=0.149 Sum_probs=163.5
Q ss_pred cccCcccCceEecccccccccccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecccCCCCCCcccc
Q 044748 112 SIECLSNLRELLIMDCSELESISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLP 191 (602)
Q Consensus 112 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~ 191 (602)
.|.++++|+++.+.+| .+..+|....-..+++.|++.+|.+..... +.++.++.|++|+|+. +.+..++
T Consensus 97 ~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~s-------e~L~~l~alrslDLSr---N~is~i~ 165 (873)
T KOG4194|consen 97 FFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTS-------EELSALPALRSLDLSR---NLISEIP 165 (873)
T ss_pred HHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccH-------HHHHhHhhhhhhhhhh---chhhccc
Confidence 3445555555555555 344445433334445555555554433333 4445555555555554 3333333
Q ss_pred ccc-cCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccc-cccccccc
Q 044748 192 INM-FSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREV-PESLGQLA 269 (602)
Q Consensus 192 ~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~ 269 (602)
..- ..-.++++|++++|.++..-...|..+.+|..|.+++|+++...+..|.++++|+.|++..|+|+.+ --.|.+++
T Consensus 166 ~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~ 245 (873)
T KOG4194|consen 166 KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLP 245 (873)
T ss_pred CCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCch
Confidence 221 1224555555555555444444455555555555555555544444455555555555555555433 11244555
Q ss_pred cccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCc
Q 044748 270 ILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFK 349 (602)
Q Consensus 270 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~ 349 (602)
+|+.|.+.+|++.......|..+.++++|++..|. + ..+.....-++..|+.|++++|.+..
T Consensus 246 Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-l-----------------~~vn~g~lfgLt~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 246 SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-L-----------------QAVNEGWLFGLTSLEQLDLSYNAIQR 307 (873)
T ss_pred hhhhhhhhhcCcccccCcceeeecccceeecccch-h-----------------hhhhcccccccchhhhhccchhhhhe
Confidence 55555555554444333444445555555555421 1 13333333335555555555555444
Q ss_pred cCCccccCCCCccEEEecCcccccCC-ccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCC
Q 044748 350 RLPDELGNLKVLKRLTIDGTAIREVP-KSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSC 428 (602)
Q Consensus 350 ~~~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 428 (602)
..++.+..+++|++|+++.|.++.++ .++..+..|+.|+++.|.+...-...|..+.+|++|++++|.+...+-+
T Consensus 308 ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED---- 383 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED---- 383 (873)
T ss_pred eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec----
Confidence 44444555555555555555555444 2344455555555555544333333444555555555555443322221
Q ss_pred CCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccC-cccccCCCCCcEEEc
Q 044748 429 NIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREV-PESLGQLSSLESLVL 506 (602)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L 506 (602)
....+.++++|+.|++.+|++....-..+.++++|++|+|.+|.|.+| |.+|..+ .|+.|-+
T Consensus 384 ---------------aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 384 ---------------AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred ---------------chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 011344455555555555554444444455555555555555555433 3444444 4444443
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.7e-34 Score=292.69 Aligned_cols=479 Identities=21% Similarity=0.224 Sum_probs=354.3
Q ss_pred EEecCCCCcCcCCcc-ccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCcc-CccccceecccCCC
Q 044748 6 EIDLSGSESLTKLPD-LSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGI-HSKYLKILNLWGCS 83 (602)
Q Consensus 6 ~L~l~~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~~~L~~L~l~~~~ 83 (602)
.+|++.++ ...+|. +-.-..++.|+++.|.....--+.+...-+|+.||+++| .....|..+ .+++|+.|+++.|.
T Consensus 2 ~vd~s~~~-l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 2 HVDASDEQ-LELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN-QISSFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred Cccccccc-CcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeecccc-ccccCCchhhhHHHHhhcccchhh
Confidence 47888887 666776 444444899999987654422234555556999999988 788899888 89999999999986
Q ss_pred CCCCCcccccccccchhccccc--cccCCccccCcccCceEecccccccccccccccccCCccEEEeeCCCCccccccCC
Q 044748 84 NLNNFPEITSCHICIFELAEVG--IKELPSSIECLSNLRELLIMDCSELESISSSIFKLKSLKSIVISHCSNFKRFLEIP 161 (602)
Q Consensus 84 ~~~~~~~~~~~~~~L~~L~l~~--~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 161 (602)
....|.+..++.+|+++.+.. ...+|.++..+.+|+.|+++.| ..+.+|..+..++.+..+..++|.....++
T Consensus 80 -i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg--- 154 (1081)
T KOG0618|consen 80 -IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLG--- 154 (1081)
T ss_pred -HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhc---
Confidence 556778888899999999988 8889999999999999999998 556778778888888888888883333322
Q ss_pred CCCCCCCcCcccceeeecccCCCCCCccccccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcc
Q 044748 162 SCNTDGCTGIERLASFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDE 241 (602)
Q Consensus 162 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 241 (602)
... ++.+++.. ......++..+..+.. .|++++|.+. . ..+..+++|+.+....|++....
T Consensus 155 --------~~~-ik~~~l~~--n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~--- 215 (1081)
T KOG0618|consen 155 --------QTS-IKKLDLRL--NVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE--- 215 (1081)
T ss_pred --------ccc-chhhhhhh--hhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE---
Confidence 111 55666655 2223344444444444 5888888665 2 23556778888887777654321
Q ss_pred cCCCCCCcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCc
Q 044748 242 LGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGST 321 (602)
Q Consensus 242 ~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 321 (602)
...++++.|+.+.|.++.+.. .....+|++++++.+.+ ..+|.+++.+.+|+.+++.+|.
T Consensus 216 -~~g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~l-~~lp~wi~~~~nle~l~~n~N~----------------- 275 (1081)
T KOG0618|consen 216 -ISGPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHNNL-SNLPEWIGACANLEALNANHNR----------------- 275 (1081)
T ss_pred -ecCcchheeeeccCcceeecc-ccccccceeeecchhhh-hcchHHHHhcccceEecccchh-----------------
Confidence 234678888888887774322 12345788888888754 4566888888888888888742
Q ss_pred chhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccc-c-ccCcEEeccCCCCCCccC
Q 044748 322 RIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQ-L-AILRWLKLTNCSGLGRIS 399 (602)
Q Consensus 322 ~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~-l-~~L~~L~l~~~~~~~~~~ 399 (602)
+..++..... ..+|+.+.+..|. ..-+|........|++|++..|++.++|+.+.. . .++..++.+.+++. ..|
T Consensus 276 -l~~lp~ri~~-~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp 351 (1081)
T KOG0618|consen 276 -LVALPLRISR-ITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLP 351 (1081)
T ss_pred -HHhhHHHHhh-hhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccc
Confidence 2356655555 6788888888876 455566677788999999999999988864432 2 23666666666443 233
Q ss_pred -ccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCccc
Q 044748 400 -SSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCL 478 (602)
Q Consensus 400 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 478 (602)
-.=..++.|+.|++.+|.+...... .+..+.+|+.|+|++|.+.......+.+++.|
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~p----------------------~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L 409 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCFP----------------------VLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL 409 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccchh----------------------hhccccceeeeeecccccccCCHHHHhchHHh
Confidence 1123467789999999887776554 67788899999999988776666778899999
Q ss_pred ceEeecCcccccCcccccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccC--Cchhhhccc-ccccccccce
Q 044748 479 TVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEG--IPEYLRSLP-SKLTSLNLSI 555 (602)
Q Consensus 479 ~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~--~~~~l~~~~-~~L~~L~l~~ 555 (602)
++|+||||+++.+|..+.+++.|++|...+|+|..+| .+..+++|+.+|++.|+++. +|+. .| ++|++||+++
T Consensus 410 eeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~---~p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 410 EELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEA---LPSPNLKYLDLSG 485 (1081)
T ss_pred HHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhh---CCCcccceeeccC
Confidence 9999999999999999999999999999999999999 78899999999999999987 5543 45 6999999998
Q ss_pred eeccc
Q 044748 556 DLRYC 560 (602)
Q Consensus 556 ~~~~~ 560 (602)
|...-
T Consensus 486 N~~l~ 490 (1081)
T KOG0618|consen 486 NTRLV 490 (1081)
T ss_pred Ccccc
Confidence 88543
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=4.6e-34 Score=289.49 Aligned_cols=473 Identities=21% Similarity=0.177 Sum_probs=299.6
Q ss_pred EEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCcc--CccccceecccCCCCCCCCcccccccccchhccccc--
Q 044748 30 LRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGI--HSKYLKILNLWGCSNLNNFPEITSCHICIFELAEVG-- 105 (602)
Q Consensus 30 L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-- 105 (602)
+|++++. ...+|..+.....++.|+++.| ..-..|-.+ ++-+|+.|++++|. .+..|..+..+.+|+.|+++.
T Consensus 3 vd~s~~~-l~~ip~~i~~~~~~~~ln~~~N-~~l~~pl~~~~~~v~L~~l~lsnn~-~~~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQ-LELIPEQILNNEALQILNLRRN-SLLSRPLEFVEKRVKLKSLDLSNNQ-ISSFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred ccccccc-CcccchhhccHHHHHhhhcccc-ccccCchHHhhheeeeEEeeccccc-cccCCchhhhHHHHhhcccchhh
Confidence 5677765 5667877777777999999998 556656444 66669999999986 566777788888888888887
Q ss_pred cccCCccccCcccCceEecccccccccccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecccCCCC
Q 044748 106 IKELPSSIECLSNLRELLIMDCSELESISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCS 185 (602)
Q Consensus 106 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 185 (602)
+...|.+..++.+|+++.|.+| .....|..+..+.+|+.|+++.|.+. .+| ..+..+..+..+..++| .
T Consensus 80 i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N~f~-~~P-------l~i~~lt~~~~~~~s~N--~ 148 (1081)
T KOG0618|consen 80 IRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSFNHFG-PIP-------LVIEVLTAEEELAASNN--E 148 (1081)
T ss_pred HhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccccccchhccC-CCc-------hhHHhhhHHHHHhhhcc--h
Confidence 7777877888888888888877 56677777777778888888877443 344 45556666666666652 1
Q ss_pred CCccccccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccccc
Q 044748 186 SPQSLPINMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESL 265 (602)
Q Consensus 186 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~ 265 (602)
.+..+.. ..++.+++..+...+.++..+..+.. .|++++|.+.. ..+..++.|+.+....|++..+-
T Consensus 149 ~~~~lg~-----~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~--- 215 (1081)
T KOG0618|consen 149 KIQRLGQ-----TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELE--- 215 (1081)
T ss_pred hhhhhcc-----ccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceEE---
Confidence 2222221 12555555555555555444433333 45666655441 12344555555555555555331
Q ss_pred cccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecC
Q 044748 266 GQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDC 345 (602)
Q Consensus 266 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~ 345 (602)
..-++++.|+.+.|.+....+. .. ..+|++++++.+
T Consensus 216 ~~g~~l~~L~a~~n~l~~~~~~--p~------------------------------------------p~nl~~~dis~n 251 (1081)
T KOG0618|consen 216 ISGPSLTALYADHNPLTTLDVH--PV------------------------------------------PLNLQYLDISHN 251 (1081)
T ss_pred ecCcchheeeeccCcceeeccc--cc------------------------------------------cccceeeecchh
Confidence 1234555555555544321111 11 234455555554
Q ss_pred CCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccC
Q 044748 346 QNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKI 425 (602)
Q Consensus 346 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 425 (602)
++ ..+|.|+..+.+|+.++..+|.++.+|..+....+|+.+.+..|.+ ..+|+....+++|++|++..|++... |.
T Consensus 252 ~l-~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel-~yip~~le~~~sL~tLdL~~N~L~~l-p~- 327 (1081)
T KOG0618|consen 252 NL-SNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNEL-EYIPPFLEGLKSLRTLDLQSNNLPSL-PD- 327 (1081)
T ss_pred hh-hcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhh-hhCCCcccccceeeeeeehhcccccc-ch-
Confidence 42 2333555555555555555555555554444445555555555422 33444444455555555554433221 11
Q ss_pred CCCCCCCCc-chhhhhhhcc------ccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcc-cccC
Q 044748 426 PSCNIDGGT-RIERLASFKL------RLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE-SLGQ 497 (602)
Q Consensus 426 ~~~~~~~~~-~~~~l~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~-~~~~ 497 (602)
.-+.-.. .+..+..... ...-...+.|+.|++.+|.+.+.....+.++.+|++|+|+||++.++|. .+.+
T Consensus 328 --~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k 405 (1081)
T KOG0618|consen 328 --NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK 405 (1081)
T ss_pred --HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhc
Confidence 0000000 0000000000 0122345779999999999999888889999999999999999999995 5688
Q ss_pred CCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCchhhhcccccccccccceeec---------cccccccccc
Q 044748 498 LSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLR---------YCLKLDSNEL 568 (602)
Q Consensus 498 l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~~---------~~~~L~~~~l 568 (602)
+..|+.|+||||+++.+|+++..++.|+.|...+|++..+| .+..+| .|+.+|+|.|-. .-++|+++++
T Consensus 406 le~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~-qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdl 483 (1081)
T KOG0618|consen 406 LEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLP-QLKVLDLSCNNLSEVTLPEALPSPNLKYLDL 483 (1081)
T ss_pred hHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcC-cceEEecccchhhhhhhhhhCCCcccceeec
Confidence 99999999999999999999999999999999999999999 777887 999999884321 1278999999
Q ss_pred hhhhhhccccccc
Q 044748 569 SEIVKGGWMKQSF 581 (602)
Q Consensus 569 ~~~~~~~~~~~~~ 581 (602)
+||.+..+....|
T Consensus 484 SGN~~l~~d~~~l 496 (1081)
T KOG0618|consen 484 SGNTRLVFDHKTL 496 (1081)
T ss_pred cCCcccccchhhh
Confidence 9998766655543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=4.8e-31 Score=256.24 Aligned_cols=366 Identities=21% Similarity=0.287 Sum_probs=251.4
Q ss_pred cCcccCceEecccccccc-cccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecccCCCCCCccccc
Q 044748 114 ECLSNLRELLIMDCSELE-SISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPI 192 (602)
Q Consensus 114 ~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~ 192 (602)
+-++-.+-+|+++|.+.+ ..|....++++++-|.+...++ ..+| +.++.+++|++|.+.+ +.+.++..
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-~~vP-------eEL~~lqkLEHLs~~H---N~L~~vhG 72 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-EQVP-------EELSRLQKLEHLSMAH---NQLISVHG 72 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh-hhCh-------HHHHHHhhhhhhhhhh---hhhHhhhh
Confidence 445667788888887774 6777788888888888887643 4556 7888888888888888 66677777
Q ss_pred cccCCCCCcccccccCCC-CcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCcccccccccc-cccccc
Q 044748 193 NMFSFKSLPSIKIIHCPN-IESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPES-LGQLAI 270 (602)
Q Consensus 193 ~~~~~~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~ 270 (602)
.+..++.|+.+.+++|.. ...+|..+..+..|..|++++|+.. ..|..+..-.++-.|++++|+|.+||.. +.+++-
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTD 151 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHh
Confidence 777888888888888754 3466777778888888888887654 4566777778888888888888888865 557777
Q ss_pred ccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCC-Cc
Q 044748 271 LRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQN-FK 349 (602)
Q Consensus 271 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~-~~ 349 (602)
|-.|+++.|. ...+|..+..+..|++|++++|+... -++.++|. +.+|+.|++++.+- ..
T Consensus 152 LLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~h-------------fQLrQLPs-----mtsL~vLhms~TqRTl~ 212 (1255)
T KOG0444|consen 152 LLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNH-------------FQLRQLPS-----MTSLSVLHMSNTQRTLD 212 (1255)
T ss_pred Hhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhH-------------HHHhcCcc-----chhhhhhhcccccchhh
Confidence 8888888874 45666777778888888888865332 11223332 56677777776542 23
Q ss_pred cCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCC
Q 044748 350 RLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCN 429 (602)
Q Consensus 350 ~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 429 (602)
.+|..+..+.+|..+|++.|.+..+|..+..+++|+.|++++|.++ .+........+|++|+++.|++. .+|.
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~----- 285 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPD----- 285 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchH-----
Confidence 5677777777777788887777777777777777777777777553 33333344556666666665543 2333
Q ss_pred CCCCcchhhhhhhccccchhccCCCCeEEeeccccc-cCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccC
Q 044748 430 IDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKF-KRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSN 508 (602)
Q Consensus 430 ~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~ 508 (602)
.++.++.|+.|.+.+|++. +-+|..++.+.+|+++..++|.+.-+|++++.|..|+.|.|+.
T Consensus 286 -----------------avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 286 -----------------AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH 348 (1255)
T ss_pred -----------------HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc
Confidence 4555666666666665532 2455666666666666666666666666666666666666666
Q ss_pred CcccccchhhhcCCCCceeecccccc
Q 044748 509 NKLERLPESFNQLSSLEYLQLFENSL 534 (602)
Q Consensus 509 n~l~~l~~~l~~l~~L~~L~l~~N~l 534 (602)
|++-.+|++++-++.|+.||++.|+=
T Consensus 349 NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 349 NRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred cceeechhhhhhcCCcceeeccCCcC
Confidence 66666666666666666666666643
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=1e-30 Score=253.92 Aligned_cols=362 Identities=17% Similarity=0.240 Sum_probs=224.1
Q ss_pred ccccceecccCCCCC-CCCcccccccccchhccccc--cccCCccccCcccCceEecccccccccccccccccCCccEEE
Q 044748 71 SKYLKILNLWGCSNL-NNFPEITSCHICIFELAEVG--IKELPSSIECLSNLRELLIMDCSELESISSSIFKLKSLKSIV 147 (602)
Q Consensus 71 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~--~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 147 (602)
+|..+-.++++|.+. +.+|..+..|+.++.|.+.. +..+|++++.+.+|++|.+++|... .+...+..++.|+.+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 456778888998877 46888899999999999988 8889999999999999999998544 4455577888888888
Q ss_pred eeCCCCcc-ccccCCCCCCCCCcCcccceeeecccCCCCCCccccccccCCCCCcccccccCCCCcccccchhccccccE
Q 044748 148 ISHCSNFK-RFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTS 226 (602)
Q Consensus 148 l~~~~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 226 (602)
+.+|++.. .+| .++-.+..|+.|+|++ +.+.+.|..+...+++-.|++++|.+....-..+.++..|-.
T Consensus 85 ~R~N~LKnsGiP-------~diF~l~dLt~lDLSh---NqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 85 VRDNNLKNSGIP-------TDIFRLKDLTILDLSH---NQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred hhccccccCCCC-------chhcccccceeeecch---hhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 88886654 455 6666777777777777 556666666666666666666666443322233345555555
Q ss_pred EeeeccCCCccCCcccCCCCCCcEEEcCcccccccc-ccccccccccEEeecCCCCc-cccccccccCCCCcEEEeecCC
Q 044748 227 LEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVP-ESLGQLAILRRLKLTNCSGL-ESISSSIFKLKSLKSIVISHCS 304 (602)
Q Consensus 227 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~ 304 (602)
|++++|+ ...+|.....+..|++|++++|.+.... .-+-.+++|+.|.+++...+ ..+|.++..+.+|..+|++.
T Consensus 155 LDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-- 231 (1255)
T KOG0444|consen 155 LDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-- 231 (1255)
T ss_pred hccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc--
Confidence 5665544 2334444555555556666555443110 00112334444444443221 13444455555555555554
Q ss_pred CccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccC
Q 044748 305 NFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAIL 384 (602)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L 384 (602)
|. ....|..+..+++|+.|++++|+|+++......-.+|
T Consensus 232 ----------------------------------------N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~l 270 (1255)
T KOG0444|consen 232 ----------------------------------------NN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENL 270 (1255)
T ss_pred ----------------------------------------cC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhh
Confidence 33 2333444444444445555555444444334444444
Q ss_pred cEEeccCCCCCCccCccccCCCCCCeEEeccCCCc-cccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccc
Q 044748 385 RWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNF-KRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQ 463 (602)
Q Consensus 385 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 463 (602)
+.|+++.|++ ..+|.++.+++.|+.|++.+|++. ..+|. .++.+..|+++..++|
T Consensus 271 EtLNlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPS----------------------GIGKL~~Levf~aanN- 326 (1255)
T KOG0444|consen 271 ETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPS----------------------GIGKLIQLEVFHAANN- 326 (1255)
T ss_pred hhhccccchh-ccchHHHhhhHHHHHHHhccCcccccCCcc----------------------chhhhhhhHHHHhhcc-
Confidence 4555554422 244444444555555544444322 12222 3444445555555553
Q ss_pred cccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcc
Q 044748 464 KFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKL 511 (602)
Q Consensus 464 ~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l 511 (602)
....+|..+..++.|+.|.|+.|++..+|+++.-++.|+.||+..|.=
T Consensus 327 ~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 327 KLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred ccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcC
Confidence 356788899999999999999999999999999999999999999983
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.95 E-value=4.4e-26 Score=258.43 Aligned_cols=334 Identities=22% Similarity=0.358 Sum_probs=225.8
Q ss_pred cccccCCccEEEeeCCCC------ccccccCCCCCCCCCcCc-ccceeeecccCCCCCCccccccccCCCCCcccccccC
Q 044748 136 SIFKLKSLKSIVISHCSN------FKRFLEIPSCNTDGCTGI-ERLASFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHC 208 (602)
Q Consensus 136 ~~~~l~~L~~L~l~~~~~------~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 208 (602)
.|..+++|+.|.+..+.. ...+| ..+..+ .+|+.|++.+ ..+..+|..+ ...+|+.|++.++
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp-------~~~~~lp~~Lr~L~~~~---~~l~~lP~~f-~~~~L~~L~L~~s 621 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLP-------EGFDYLPPKLRLLRWDK---YPLRCMPSNF-RPENLVKLQMQGS 621 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecC-------cchhhcCcccEEEEecC---CCCCCCCCcC-CccCCcEEECcCc
Confidence 466777777777755422 11233 444444 3577777776 3455666555 3567777777776
Q ss_pred CCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCcc-ccccccccccccccccEEeecCCCCcccccc
Q 044748 209 PNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRT-AIREVPESLGQLAILRRLKLTNCSGLESISS 287 (602)
Q Consensus 209 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 287 (602)
.+ ..++..+..+++|+.|+++++.....+|. +..+++|+.|++++| .+..+|..+..+++|+.|++++|...+.+|.
T Consensus 622 ~l-~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 622 KL-EKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred cc-cccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 43 44555566777777888777666666653 666777788888776 4567777777777788888877776666666
Q ss_pred ccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEec
Q 044748 288 SIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTID 367 (602)
Q Consensus 288 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 367 (602)
.+ .+++|+.|++++|..+. .+|.. ..+|++|+++++.+ ..+|..+ .+++|++|.+.
T Consensus 700 ~i-~l~sL~~L~Lsgc~~L~-----------------~~p~~----~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~l~ 755 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCSRLK-----------------SFPDI----STNISWLDLDETAI-EEFPSNL-RLENLDELILC 755 (1153)
T ss_pred cC-CCCCCCEEeCCCCCCcc-----------------ccccc----cCCcCeeecCCCcc-ccccccc-ccccccccccc
Confidence 54 57777788887775544 22211 35677777777663 4455433 46677777776
Q ss_pred CcccccC-------C-ccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhh
Q 044748 368 GTAIREV-------P-KSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERL 439 (602)
Q Consensus 368 ~n~i~~l-------~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l 439 (602)
++....+ + .....+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|.
T Consensus 756 ~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~--------------- 820 (1153)
T PLN03210 756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT--------------- 820 (1153)
T ss_pred ccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC---------------
Confidence 5332211 1 1122346788888888877777888888888888888888877666664
Q ss_pred hhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCc-ccccchhh
Q 044748 440 ASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNK-LERLPESF 518 (602)
Q Consensus 440 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~-l~~l~~~l 518 (602)
.. .+++|+.|++++|.....+|.. ..+|+.|++++|.++.+|..+..+++|+.|++++|. ++.+|..+
T Consensus 821 -------~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~ 889 (1153)
T PLN03210 821 -------GI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI 889 (1153)
T ss_pred -------CC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccc
Confidence 22 5678888888888766665543 356888888888888888888888888888888865 67787777
Q ss_pred hcCCCCceeecccc
Q 044748 519 NQLSSLEYLQLFEN 532 (602)
Q Consensus 519 ~~l~~L~~L~l~~N 532 (602)
..+++|+.+++++|
T Consensus 890 ~~L~~L~~L~l~~C 903 (1153)
T PLN03210 890 SKLKHLETVDFSDC 903 (1153)
T ss_pred ccccCCCeeecCCC
Confidence 77888888888887
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=4.5e-24 Score=242.13 Aligned_cols=310 Identities=23% Similarity=0.412 Sum_probs=215.1
Q ss_pred ccceecccCCCCCCCCcccccccccchhccccc--cccCCccccCcccCceEecccccccccccccccccCCccEEEeeC
Q 044748 73 YLKILNLWGCSNLNNFPEITSCHICIFELAEVG--IKELPSSIECLSNLRELLIMDCSELESISSSIFKLKSLKSIVISH 150 (602)
Q Consensus 73 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 150 (602)
+|+.|.+.+++ ...+|..+ ...+|+.|++.+ +..++..+..+++|+.|+++++.....+|. +..+++|++|++++
T Consensus 590 ~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 590 KLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred ccEEEEecCCC-CCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 35555555543 23344333 234555555554 445555566667777777776655555554 66667777777777
Q ss_pred CCCccccccCCCCCCCCCcCcccceeeecccCCCCCCccccccccCCCCCcccccccCCCCcccccchhccccccEEeee
Q 044748 151 CSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIV 230 (602)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 230 (602)
|.....+| ..+..+++|+.|++++ |..++.+|..+ .+++|+.|++++|...+.+|.. ..+|+.|++.
T Consensus 667 c~~L~~lp-------~si~~L~~L~~L~L~~--c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~ 733 (1153)
T PLN03210 667 CSSLVELP-------SSIQYLNKLEDLDMSR--CENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLD 733 (1153)
T ss_pred CCCccccc-------hhhhccCCCCEEeCCC--CCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecC
Confidence 76666666 6666777777777776 66666666654 5677777777777666655542 3567777777
Q ss_pred ccCCCccCCcccCCCCCCcEEEcCccccccc-------cc-cccccccccEEeecCCCCccccccccccCCCCcEEEeec
Q 044748 231 DCQNFKRLPDELGNLKALQRLTVDRTAIREV-------PE-SLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISH 302 (602)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-------~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 302 (602)
++.+. .+|..+ .+++|+.|.+.++....+ +. .....++|+.|++++|.....+|..+.++++|+.|++++
T Consensus 734 ~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 734 ETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred CCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 76643 344433 466777777766432211 11 122356899999999888888888899999999999998
Q ss_pred CCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccc
Q 044748 303 CSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLA 382 (602)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~ 382 (602)
|..++ .+|... .+++|++|++++|.....+|.. .+++++|++++|.++.+|..+..++
T Consensus 812 C~~L~-----------------~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~ 869 (1153)
T PLN03210 812 CINLE-----------------TLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFS 869 (1153)
T ss_pred CCCcC-----------------eeCCCC--CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCC
Confidence 87665 455443 3788999999998877666543 3679999999999999999899999
Q ss_pred cCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCcccc
Q 044748 383 ILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRF 422 (602)
Q Consensus 383 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 422 (602)
+|+.|++.+|.....+|..+..++.|+.+++++|.....+
T Consensus 870 ~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 9999999999888888888888999999999999766543
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.80 E-value=8.4e-22 Score=182.41 Aligned_cols=390 Identities=17% Similarity=0.106 Sum_probs=215.8
Q ss_pred CcEEecCCCCcCcCCcc--ccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCcc--Cccccceecc
Q 044748 4 LKEIDLSGSESLTKLPD--LSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGI--HSKYLKILNL 79 (602)
Q Consensus 4 L~~L~l~~~~~~~~~~~--~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~--~~~~L~~L~l 79 (602)
-++++|..|+ +.++|+ |..+++||+||||+|.+...-|++|.++.+|..|-+-+++.+..+|... .+..|+.|.+
T Consensus 69 tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 4678999998 677775 9999999999999999888889999999998888888755888898888 8999999999
Q ss_pred cCCCCCCCCcccccccccchhccccc--cccCCc-cccCcccCceEecccccccc------------cccccccccCCcc
Q 044748 80 WGCSNLNNFPEITSCHICIFELAEVG--IKELPS-SIECLSNLRELLIMDCSELE------------SISSSIFKLKSLK 144 (602)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~l~~-~~~~l~~L~~L~l~~~~~~~------------~~~~~~~~l~~L~ 144 (602)
.-|.+.....+.+..+++|..|.+.+ +..++. .+..+..++.+.+..|.... ..+.+++......
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 88887777777788888888888877 666666 67777888888887775221 1111122222222
Q ss_pred EEEeeCCCCccccccCCCCCCCCCcCcccceee--ecccCCCCCCcccc-ccccCCCCCcccccccCCCCcccccchhcc
Q 044748 145 SIVISHCSNFKRFLEIPSCNTDGCTGIERLASF--KLKLEGCSSPQSLP-INMFSFKSLPSIKIIHCPNIESLPSSLCMF 221 (602)
Q Consensus 145 ~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L--~l~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 221 (602)
-..+.+.++...-+ ..+.. .++.+ .+.. .|......| ..+..+++|+.|++++|.+...-+.+|...
T Consensus 228 p~rl~~~Ri~q~~a-------~kf~c--~~esl~s~~~~-~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 228 PYRLYYKRINQEDA-------RKFLC--SLESLPSRLSS-EDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred hHHHHHHHhcccch-------hhhhh--hHHhHHHhhcc-ccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence 22222222111111 11100 01111 0000 011111111 224445666666666666655555566666
Q ss_pred ccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccc-cccccccccccEEeecCCCCcc-----cccccccc----
Q 044748 222 KSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREV-PESLGQLAILRRLKLTNCSGLE-----SISSSIFK---- 291 (602)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~---- 291 (602)
..++.|.+.+|++...-...|.++..|+.|++++|+|+.+ |-.|..+..|.+|++-.|+..- .+..++.+
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~ 377 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVV 377 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCC
Confidence 6666666666655444444555666666666666666644 3335555566666665554322 01111110
Q ss_pred -------CCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccc-cCCCcccEEEEecCCCCccCCccccCCCCccE
Q 044748 292 -------LKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNL-CMFKSLKYLEIVDCQNFKRLPDELGNLKVLKR 363 (602)
Q Consensus 292 -------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 363 (602)
-..++.+.++... +.++.. ++.....-.+.... ..++-+.++.=-.+...+.+|..+. ...++
T Consensus 378 ~~~~Cq~p~~~~~~~~~dv~-~~~~~c------~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~te 448 (498)
T KOG4237|consen 378 GNPRCQSPGFVRQIPISDVA-FGDFRC------GGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTE 448 (498)
T ss_pred CCCCCCCCchhccccchhcc-cccccc------CCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHH
Confidence 0122333333210 000000 00000000000000 0011122211111222334443222 24567
Q ss_pred EEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccC
Q 044748 364 LTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNC 416 (602)
Q Consensus 364 L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (602)
+.+.+|.++.+|.. .+.++ .+++++|++..--...|.+++.|.+|.++.|
T Consensus 449 lyl~gn~~~~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 449 LYLDGNAITSVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred HhcccchhcccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 88888999988865 56777 8899988775444556777888888887753
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=1.9e-21 Score=180.03 Aligned_cols=397 Identities=17% Similarity=0.150 Sum_probs=251.0
Q ss_pred cccCCccccCcccCceEecccccccccccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecccCCCC
Q 044748 106 IKELPSSIECLSNLRELLIMDCSELESISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCS 185 (602)
Q Consensus 106 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 185 (602)
+.++|..+. +.-..++|..|++...-+.+|..+++||+|++++|++....| .+|++++.+..|.+.+ .+
T Consensus 58 L~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p-------~AF~GL~~l~~Lvlyg--~N 126 (498)
T KOG4237|consen 58 LTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP-------DAFKGLASLLSLVLYG--NN 126 (498)
T ss_pred cccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcCh-------HhhhhhHhhhHHHhhc--CC
Confidence 445554442 456788999996665555678899999999999999988888 8999999999888877 57
Q ss_pred CCccccccc-cCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccc---cc
Q 044748 186 SPQSLPINM-FSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIR---EV 261 (602)
Q Consensus 186 ~~~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~---~l 261 (602)
+++.+|... .++..++.|.+.-|.+.-...+.+..++++..|.+.+|.+...-...|..+.+++.+.+..|.+. .+
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence 888888654 45889999999888887777788888999999999998766555557888889999988887643 11
Q ss_pred cc----------cccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccc
Q 044748 262 PE----------SLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNL 331 (602)
Q Consensus 262 ~~----------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 331 (602)
|. .++.........+...++...-+..+. -+++.+ +.............|...+
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~--c~~esl--------------~s~~~~~d~~d~~cP~~cf 270 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFL--CSLESL--------------PSRLSSEDFPDSICPAKCF 270 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhh--hhHHhH--------------HHhhccccCcCCcChHHHH
Confidence 11 111111111111111111110000000 001111 0000011111224455556
Q ss_pred cCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCC-ccccccccCcEEeccCCCCCCccCccccCCCCCCe
Q 044748 332 CMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVP-KSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKS 410 (602)
Q Consensus 332 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 410 (602)
..+++|+++++++|.+...-+.+|.+...+++|.+..|++..+. ..|.++..|+.|++.+|+++...|..|....+|.+
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~ 350 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST 350 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence 67899999999999988888889999999999999999998655 45778899999999999998888989999999999
Q ss_pred EEeccCCCccc--------------cccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeecccccc---CCC----
Q 044748 411 IEISNCSNFKR--------------FLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFK---RLP---- 469 (602)
Q Consensus 411 L~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~---- 469 (602)
|.+-.|++.-. ....|.| .....++.+.+++..+.+ ..|
T Consensus 351 l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~C--------------------q~p~~~~~~~~~dv~~~~~~c~~~ee~~ 410 (498)
T KOG4237|consen 351 LNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRC--------------------QSPGFVRQIPISDVAFGDFRCGGPEELG 410 (498)
T ss_pred eehccCcccCccchHHHHHHHhhCCCCCCCCC--------------------CCCchhccccchhccccccccCCccccC
Confidence 99877654321 0111111 112234444444433221 111
Q ss_pred -----hhhhCCcccc-eEeecCcccccCcccccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCchhhhc
Q 044748 470 -----NEIGNSKCLT-VLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPEYLRS 543 (602)
Q Consensus 470 -----~~l~~~~~L~-~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~l~~ 543 (602)
.+-...+.+. +...|+..++.+|..++. ....|++.+|.++.+|.. .+.+| .+|+++|++..+....+.
T Consensus 411 ~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~--d~telyl~gn~~~~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~ 485 (498)
T KOG4237|consen 411 CLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPV--DVTELYLDGNAITSVPDE--LLRSL-LLDLSNNRISSLSNYTFS 485 (498)
T ss_pred CCCCCCCCCCcchhhhhHhhcccchhhcCCCCCc--hhHHHhcccchhcccCHH--HHhhh-hcccccCceehhhccccc
Confidence 1122233333 234444555666655543 555677777777777765 44556 677777777664443333
Q ss_pred ccccccccccc
Q 044748 544 LPSKLTSLNLS 554 (602)
Q Consensus 544 ~~~~L~~L~l~ 554 (602)
-..+|.+|-+|
T Consensus 486 n~tql~tlils 496 (498)
T KOG4237|consen 486 NMTQLSTLILS 496 (498)
T ss_pred chhhhheeEEe
Confidence 33355554444
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=1.2e-18 Score=183.61 Aligned_cols=263 Identities=22% Similarity=0.189 Sum_probs=161.3
Q ss_pred CCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccccccccccccEEeecC
Q 044748 199 SLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTN 278 (602)
Q Consensus 199 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~ 278 (602)
+-..|+++++.+. .+|..+. ++|+.|++.+|++.. +|. .+++|++|++++|+++.+|.. .++|+.|++++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 3445666666443 4555443 367777777665543 332 246677777777777766642 35667777776
Q ss_pred CCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCC
Q 044748 279 CSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNL 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 358 (602)
|.+. .+|. ..+.|+.|++++| .++ .+|. ..++|++|++++|.+.+ +|.. .
T Consensus 272 N~L~-~Lp~---lp~~L~~L~Ls~N-~Lt-----------------~LP~----~p~~L~~LdLS~N~L~~-Lp~l---p 321 (788)
T PRK15387 272 NPLT-HLPA---LPSGLCKLWIFGN-QLT-----------------SLPV----LPPGLQELSVSDNQLAS-LPAL---P 321 (788)
T ss_pred Cchh-hhhh---chhhcCEEECcCC-ccc-----------------cccc----cccccceeECCCCcccc-CCCC---c
Confidence 6433 3332 1245666777664 222 2332 13567777777776543 3331 2
Q ss_pred CCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhh
Q 044748 359 KVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIER 438 (602)
Q Consensus 359 ~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (602)
..|+.|++++|.++.+|.. ..+|+.|++++|.+. .+|.. .++|+.|++++|.+.. +|.
T Consensus 322 ~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~-------------- 379 (788)
T PRK15387 322 SELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPA-------------- 379 (788)
T ss_pred ccccccccccCcccccccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Ccc--------------
Confidence 3566777777777766641 246777777777554 34432 3566677777765442 333
Q ss_pred hhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccchhh
Q 044748 439 LASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPESF 518 (602)
Q Consensus 439 l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~l 518 (602)
...+|+.|++++|.+.. +|.. .++|+.|++++|.++.+|.. ..+|+.|++++|+|+.+|..+
T Consensus 380 -----------l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl 441 (788)
T PRK15387 380 -----------LPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESL 441 (788)
T ss_pred -----------cccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHH
Confidence 12467888888877553 4432 35688888888888888753 246777888888888888878
Q ss_pred hcCCCCceeecccccccC-Cchhh
Q 044748 519 NQLSSLEYLQLFENSLEG-IPEYL 541 (602)
Q Consensus 519 ~~l~~L~~L~l~~N~l~~-~~~~l 541 (602)
..+++|+.|++++|+|++ .+..+
T Consensus 442 ~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 442 IHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhccCCCeEECCCCCCCchHHHHH
Confidence 788888888888888887 54444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=2.3e-18 Score=181.61 Aligned_cols=256 Identities=23% Similarity=0.228 Sum_probs=143.0
Q ss_pred cccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEeec
Q 044748 223 SLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISH 302 (602)
Q Consensus 223 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 302 (602)
.-..|+++++.+. .+|..+. ++|+.|++.+|+++.+|.. .++|+.|++++|.+. .+|. ..++|+.|++++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~---lp~sL~~L~Ls~ 271 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPV---LPPGLLELSIFS 271 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccC---cccccceeeccC
Confidence 4556666666544 3454443 3566777777777666642 456777777666443 3332 135666666666
Q ss_pred CCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccc
Q 044748 303 CSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLA 382 (602)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~ 382 (602)
|. ++ .++.. +++|+.|++++|.+. .+|. ..++|+.|++++|+++.+|.. ..
T Consensus 272 N~-L~-----------------~Lp~l----p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~l---p~ 322 (788)
T PRK15387 272 NP-LT-----------------HLPAL----PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPAL---PS 322 (788)
T ss_pred Cc-hh-----------------hhhhc----hhhcCEEECcCCccc-cccc---cccccceeECCCCccccCCCC---cc
Confidence 42 22 22221 345666667666543 3333 235667777777766666542 23
Q ss_pred cCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeecc
Q 044748 383 ILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDC 462 (602)
Q Consensus 383 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 462 (602)
+|+.|++.+|.+. .+|. ..++|++|++++|++.. +|.. .++|+.|++++|
T Consensus 323 ~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~N~Ls~-LP~l-------------------------p~~L~~L~Ls~N 372 (788)
T PRK15387 323 ELCKLWAYNNQLT-SLPT---LPSGLQELSVSDNQLAS-LPTL-------------------------PSELYKLWAYNN 372 (788)
T ss_pred cccccccccCccc-cccc---cccccceEecCCCccCC-CCCC-------------------------Ccccceehhhcc
Confidence 4666666666443 3443 12456677777665442 3321 134566666666
Q ss_pred ccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCchhhh
Q 044748 463 QKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPEYLR 542 (602)
Q Consensus 463 ~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~l~ 542 (602)
.+.. +|.. ..+|+.|++++|.++.+|.. .++|+.|++++|+|+.+|.. ..+|+.|++++|+|+.+|+.+.
T Consensus 373 ~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~ 442 (788)
T PRK15387 373 RLTS-LPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLI 442 (788)
T ss_pred cccc-Cccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHh
Confidence 5443 4432 24566777777777666642 24666777777777666643 2356667777777766666666
Q ss_pred cccccccccccceeec
Q 044748 543 SLPSKLTSLNLSIDLR 558 (602)
Q Consensus 543 ~~~~~L~~L~l~~~~~ 558 (602)
.++ +|+.+++++|..
T Consensus 443 ~L~-~L~~LdLs~N~L 457 (788)
T PRK15387 443 HLS-SETTVNLEGNPL 457 (788)
T ss_pred hcc-CCCeEECCCCCC
Confidence 655 666666555443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=1.4e-17 Score=176.88 Aligned_cols=248 Identities=21% Similarity=0.284 Sum_probs=155.9
Q ss_pred ccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEee
Q 044748 222 KSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVIS 301 (602)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 301 (602)
.+...|++.++.+. .+|..+ .+.++.|++++|+++.+|..+. ++|+.|++++|.+. .+|..+. ++|+.|+++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 35677888776554 345444 2578888888888888877543 57888888887644 4555433 468888888
Q ss_pred cCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCcccccc
Q 044748 302 HCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQL 381 (602)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l 381 (602)
+|. +. .+|... ..+|+.|++++|++. .+|..+. ++|+.|++++|+++.+|..+.
T Consensus 250 ~N~-L~-----------------~LP~~l---~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp-- 303 (754)
T PRK15370 250 INR-IT-----------------ELPERL---PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP-- 303 (754)
T ss_pred CCc-cC-----------------cCChhH---hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccch--
Confidence 753 22 333322 246778888877654 4554443 468888888888777765432
Q ss_pred ccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeec
Q 044748 382 AILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIID 461 (602)
Q Consensus 382 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 461 (602)
++|+.|++++|.+. .+|..+ .++|+.|++++|.+.. +|. .+ .++|+.|++++
T Consensus 304 ~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~----------------------~l--~~sL~~L~Ls~ 355 (754)
T PRK15370 304 SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPA----------------------SL--PPELQVLDVSK 355 (754)
T ss_pred hhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-CCh----------------------hh--cCcccEEECCC
Confidence 46777777777654 344322 3567777777775443 332 11 24677777777
Q ss_pred cccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccchhhh----cCCCCceeecccccccC
Q 044748 462 CQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPESFN----QLSSLEYLQLFENSLEG 536 (602)
Q Consensus 462 ~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~l~----~l~~L~~L~l~~N~l~~ 536 (602)
|.+. .+|..+ .++|+.|++++|.++.+|..+.. +|+.|++++|+++.+|..+. .++.+..|++.+|+++.
T Consensus 356 N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~~--sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 356 NQIT-VLPETL--PPTITTLDVSRNALTNLPENLPA--ALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred CCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHHH--HHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 7654 344433 25677777777777777765542 57777777777766665432 34666777777777764
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=5.3e-17 Score=172.54 Aligned_cols=245 Identities=20% Similarity=0.283 Sum_probs=122.1
Q ss_pred CcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccc
Q 044748 248 LQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLA 327 (602)
Q Consensus 248 L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 327 (602)
...|++++++++.+|..+ .+.++.|++++|.+. .+|..+. ++|++|++++| .++ .+|
T Consensus 180 ~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N-~Lt-----------------sLP 236 (754)
T PRK15370 180 KTELRLKILGLTTIPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSN-QLT-----------------SIP 236 (754)
T ss_pred ceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCC-ccc-----------------cCC
Confidence 455666666666555433 235666666665433 3443332 35666666653 222 222
Q ss_pred cccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCC
Q 044748 328 SSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKS 407 (602)
Q Consensus 328 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 407 (602)
... .++|+.|++++|.+. .+|..+. ++|+.|++++|+++.+|..+. ++|+.|++++|.+. .+|..+ .++
T Consensus 237 ~~l---~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l--p~s 305 (754)
T PRK15370 237 ATL---PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHL--PSG 305 (754)
T ss_pred hhh---hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccc--hhh
Confidence 221 234566666665533 3443332 356666666666665554332 35666666666443 233322 234
Q ss_pred CCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcc
Q 044748 408 LKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTA 487 (602)
Q Consensus 408 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~ 487 (602)
|+.|++++|.+.. +|. . ..++|+.|++++|.+.+ +|..+ .++|+.|++++|.
T Consensus 306 L~~L~Ls~N~Lt~-LP~----------------------~--l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~ 357 (754)
T PRK15370 306 ITHLNVQSNSLTA-LPE----------------------T--LPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQ 357 (754)
T ss_pred HHHHHhcCCcccc-CCc----------------------c--ccccceeccccCCcccc-CChhh--cCcccEEECCCCC
Confidence 5666666654432 221 1 11355666666655433 34333 2456666666666
Q ss_pred cccCcccccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCchhhhccc---ccccccccceeec
Q 044748 488 IREVPESLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPEYLRSLP---SKLTSLNLSIDLR 558 (602)
Q Consensus 488 l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~l~~~~---~~L~~L~l~~~~~ 558 (602)
++.+|..+. ++|+.|++++|+++.+|..+. ..|+.|++++|+++.+|..+..+. +.+..+++..|+.
T Consensus 358 L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 358 ITVLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCcCChhhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 665555443 456666666666666655432 246666666666655555443321 2444445444443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=4e-17 Score=161.65 Aligned_cols=205 Identities=23% Similarity=0.198 Sum_probs=110.9
Q ss_pred CCcccEEEEecCCCCccCCccccCCC---CccEEEecCccccc-----CCcccccc-ccCcEEeccCCCCCC----ccCc
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLK---VLKRLTIDGTAIRE-----VPKSLSQL-AILRWLKLTNCSGLG----RISS 400 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~---~L~~L~l~~n~i~~-----l~~~~~~l-~~L~~L~l~~~~~~~----~~~~ 400 (602)
+++|++|++++|.+.+..+..+..+. +|++|++++|.+.. +...+..+ ++|+.+++++|.+.+ .++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 44555555555554433333332222 36666666655541 11233344 566666666665542 1233
Q ss_pred cccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccC----CChhhhCCc
Q 044748 401 SIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKR----LPNEIGNSK 476 (602)
Q Consensus 401 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~ 476 (602)
.+..++.|++|++++|.+...... .+...+...++|++|++++|.+.+. +...+..++
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIR------------------ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHH------------------HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 444556677777766654421100 0001233445777777777665432 233455667
Q ss_pred ccceEeecCcccccC-cccc-----cCCCCCcEEEccCCccc-----ccchhhhcCCCCceeecccccccCC-----chh
Q 044748 477 CLTVLIVKGTAIREV-PESL-----GQLSSLESLVLSNNKLE-----RLPESFNQLSSLEYLQLFENSLEGI-----PEY 540 (602)
Q Consensus 477 ~L~~L~L~~n~l~~l-~~~~-----~~l~~L~~L~L~~n~l~-----~l~~~l~~l~~L~~L~l~~N~l~~~-----~~~ 540 (602)
+|++|++++|.++.. ...+ ...+.|+.|++++|.++ .+...+..+++|+++++++|.++.- .+.
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 788888888877631 1111 12468888888888874 2334455667888888888888742 223
Q ss_pred hhccccccccccccee
Q 044748 541 LRSLPSKLTSLNLSID 556 (602)
Q Consensus 541 l~~~~~~L~~L~l~~~ 556 (602)
+....+.|+.+++..+
T Consensus 302 ~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 302 LLEPGNELESLWVKDD 317 (319)
T ss_pred HhhcCCchhhcccCCC
Confidence 3333245666555544
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=2.7e-17 Score=162.85 Aligned_cols=272 Identities=18% Similarity=0.141 Sum_probs=142.4
Q ss_pred cccccCCCC-cccccchhccccccEEeeeccCCCc----cCCcccCCCCCCcEEEcCcccccc-------cccccccccc
Q 044748 203 IKIIHCPNI-ESLPSSLCMFKSLTSLEIVDCQNFK----RLPDELGNLKALQRLTVDRTAIRE-------VPESLGQLAI 270 (602)
Q Consensus 203 L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~-------l~~~~~~l~~ 270 (602)
|++..+... ......+..+..|+.+++.++.+.. .++..+...+.++.++++++.+.. ++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 445554443 2333444556667777777766532 233344455666777766665442 1223344556
Q ss_pred ccEEeecCCCCccccccccccCCC---CcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCC
Q 044748 271 LRRLKLTNCSGLESISSSIFKLKS---LKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQN 347 (602)
Q Consensus 271 L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~ 347 (602)
|+.|++++|......+..+..+.. |++|++++ |.+
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~------------------------------------------~~~ 120 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNN------------------------------------------NGL 120 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeC------------------------------------------Ccc
Confidence 666666655544333333332222 55555554 433
Q ss_pred Cc----cCCccccCC-CCccEEEecCcccc-----cCCccccccccCcEEeccCCCCCCc----cCccccCCCCCCeEEe
Q 044748 348 FK----RLPDELGNL-KVLKRLTIDGTAIR-----EVPKSLSQLAILRWLKLTNCSGLGR----ISSSIFKLKSLKSIEI 413 (602)
Q Consensus 348 ~~----~~~~~~~~~-~~L~~L~l~~n~i~-----~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l 413 (602)
.+ .+...+..+ ++|++|++++|.++ .++..+..+++|++|++++|.+.+. ++..+..+++|++|++
T Consensus 121 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L 200 (319)
T cd00116 121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL 200 (319)
T ss_pred chHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEec
Confidence 21 111122233 45555555555444 1222333444555666655544421 2223334456666666
Q ss_pred ccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhh-----CCcccceEeecCccc
Q 044748 414 SNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIG-----NSKCLTVLIVKGTAI 488 (602)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~L~~n~l 488 (602)
++|.+...... .+...+..+++|+.|++++|.+.+.....+. ..+.|++|++++|.+
T Consensus 201 ~~n~i~~~~~~------------------~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 201 NNNGLTDEGAS------------------ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred cCCccChHHHH------------------HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 66544321110 0111334556677777776665442211111 246889999999988
Q ss_pred c-----cCcccccCCCCCcEEEccCCccccc-----chhhhcC-CCCceeecccccc
Q 044748 489 R-----EVPESLGQLSSLESLVLSNNKLERL-----PESFNQL-SSLEYLQLFENSL 534 (602)
Q Consensus 489 ~-----~l~~~~~~l~~L~~L~L~~n~l~~l-----~~~l~~l-~~L~~L~l~~N~l 534 (602)
+ .+...+..+++|+.+++++|.++.- ...+... +.|+++++.+|++
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 5 3445567778999999999998543 2334444 6899999999874
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=6.2e-18 Score=138.86 Aligned_cols=165 Identities=24% Similarity=0.345 Sum_probs=119.1
Q ss_pred cCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcc
Q 044748 356 GNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTR 435 (602)
Q Consensus 356 ~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 435 (602)
..+..++.|.+++|+++.+|+.++.+.+|+.|++.+|+ ..++|..++.++.|+.|++.-|.+ ...|.
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl-~~lpr----------- 96 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRL-NILPR----------- 96 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhh-hcCcc-----------
Confidence 34455555666666666666666666666666666553 345555566666666666553322 12222
Q ss_pred hhhhhhhccccchhccCCCCeEEeecccccc-CCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCccccc
Q 044748 436 IERLASFKLRLDLCMVKNLTSLKIIDCQKFK-RLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERL 514 (602)
Q Consensus 436 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l 514 (602)
.|+.++.|+.|++..|++.+ .+|..|..+..|+.|++++|.+.-+|..++++++|+.|.+.+|.+-++
T Consensus 97 -----------gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~l 165 (264)
T KOG0617|consen 97 -----------GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSL 165 (264)
T ss_pred -----------ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhC
Confidence 55666666666666666554 567778888899999999999999999999999999999999999999
Q ss_pred chhhhcCCCCceeecccccccCCchhhhcc
Q 044748 515 PESFNQLSSLEYLQLFENSLEGIPEYLRSL 544 (602)
Q Consensus 515 ~~~l~~l~~L~~L~l~~N~l~~~~~~l~~~ 544 (602)
|..++.+..|++|.+.+|+++.+|..+..+
T Consensus 166 pkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred cHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 999999999999999999999887665544
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.4e-16 Score=131.05 Aligned_cols=178 Identities=21% Similarity=0.396 Sum_probs=152.2
Q ss_pred CCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEe
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEI 413 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 413 (602)
+..++.|.+++|+ ...+|..++.+.+|+.|.+.+|+++++|.+++.++.|+.|++..|. ...+|.+|+.+|.|+.||+
T Consensus 32 ~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhc
Confidence 6788899999987 5666777999999999999999999999999999999999999885 4578999999999999999
Q ss_pred ccCCCcc-ccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCc
Q 044748 414 SNCSNFK-RFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVP 492 (602)
Q Consensus 414 ~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~ 492 (602)
..|++.. .+|. .|-.+..|+.|++++|. .+.+|...+.+++|+.|.+.+|.+-++|
T Consensus 110 tynnl~e~~lpg----------------------nff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lp 166 (264)
T KOG0617|consen 110 TYNNLNENSLPG----------------------NFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLP 166 (264)
T ss_pred cccccccccCCc----------------------chhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCc
Confidence 9987654 3444 56677888999999987 4677888999999999999999999999
Q ss_pred ccccCCCCCcEEEccCCcccccchhhhcCC---CCceeecccccccC
Q 044748 493 ESLGQLSSLESLVLSNNKLERLPESFNQLS---SLEYLQLFENSLEG 536 (602)
Q Consensus 493 ~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~---~L~~L~l~~N~l~~ 536 (602)
..++.++.|+.|.+.+|+++.+|..++++. +=+.+.+.+|+...
T Consensus 167 keig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 999999999999999999999998776543 33455666666654
No 23
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=8.4e-12 Score=112.46 Aligned_cols=176 Identities=21% Similarity=0.224 Sum_probs=116.3
Q ss_pred CCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCC-CCCCccCccccCCCCCCeEE
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNC-SGLGRISSSIFKLKSLKSIE 412 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~ 412 (602)
+.+|..+.++.|. ...+......-|.|.++.+.+..+...|..+. ...+....-..- ...|.....+.....|+++|
T Consensus 213 f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~p-e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD 290 (490)
T KOG1259|consen 213 FRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTTIQDVPSLLP-ETILADPSGSEPSTSNGSALVSADTWQELTELD 290 (490)
T ss_pred hhhhheeeeeccc-hhheeceeecCchhheeeeecccccccccccc-hhhhcCccCCCCCccCCceEEecchHhhhhhcc
Confidence 7888999998876 23333334455788899888876654442211 112222111111 11233333344556788888
Q ss_pred eccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCc
Q 044748 413 ISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVP 492 (602)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~ 492 (602)
+++|.+.. +.. +..-.|.++.|++++|.+.... .+..+++|+.||||+|.++++.
T Consensus 291 LS~N~I~~-iDE----------------------SvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~ 345 (490)
T KOG1259|consen 291 LSGNLITQ-IDE----------------------SVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECV 345 (490)
T ss_pred ccccchhh-hhh----------------------hhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhh
Confidence 88864432 222 4556678888888888765543 2777888889999998888887
Q ss_pred ccccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCC
Q 044748 493 ESLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGI 537 (602)
Q Consensus 493 ~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~ 537 (602)
..-..+.+.++|.|++|.|+++ .+++.+=+|..||+++|+|..+
T Consensus 346 Gwh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred hhHhhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccchhhH
Confidence 7667788888888888888877 4677788888888888888764
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=8.6e-12 Score=118.29 Aligned_cols=183 Identities=20% Similarity=0.225 Sum_probs=128.9
Q ss_pred CCcccEEEEecCCCCccCC--ccccCCCCccEEEecCccccc---CCccccccccCcEEeccCCCCCCccCc-cccCCCC
Q 044748 334 FKSLKYLEIVDCQNFKRLP--DELGNLKVLKRLTIDGTAIRE---VPKSLSQLAILRWLKLTNCSGLGRISS-SIFKLKS 407 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~---l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~ 407 (602)
+++|+.+.+.++.. +..+ .....+++++.||++.|-+.. +-....++|+|+.|+++.|.+.....+ .-..++.
T Consensus 120 ~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 77889999988763 3333 356788999999999987763 334567889999999999876533322 1225788
Q ss_pred CCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcc
Q 044748 408 LKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTA 487 (602)
Q Consensus 408 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~ 487 (602)
|+.|.++.|.+.-.-.. -....+|+|+.|++..|.....-......+..|++|+|++|.
T Consensus 199 lK~L~l~~CGls~k~V~---------------------~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQ---------------------WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred hheEEeccCCCCHHHHH---------------------HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 99999999876522111 034567888888888885333333334556678889999988
Q ss_pred cccCc--ccccCCCCCcEEEccCCccccc--chh-----hhcCCCCceeecccccccCCc
Q 044748 488 IREVP--ESLGQLSSLESLVLSNNKLERL--PES-----FNQLSSLEYLQLFENSLEGIP 538 (602)
Q Consensus 488 l~~l~--~~~~~l~~L~~L~L~~n~l~~l--~~~-----l~~l~~L~~L~l~~N~l~~~~ 538 (602)
+...+ ...+.++.|..|+++.|+|.++ |+. ...+++|++|++..|++.+++
T Consensus 258 li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 258 LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred ccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 87665 4567788888888888888655 222 346788999999998887654
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=3.4e-11 Score=108.61 Aligned_cols=135 Identities=25% Similarity=0.297 Sum_probs=100.7
Q ss_pred cCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcc
Q 044748 356 GNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTR 435 (602)
Q Consensus 356 ~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 435 (602)
..+..|+++|+++|.|+.+..++.-.|.++.|+++.|.+.. +. .+..+++|+.||+++|.+.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls---------------- 342 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA---------------- 342 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH----------------
Confidence 34557889999999999888888888999999999986542 22 2556777777777775322
Q ss_pred hhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccc
Q 044748 436 IERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLP 515 (602)
Q Consensus 436 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~ 515 (602)
.+..+-..+.+.+.|.|++|.|.++. ++..+-+|..||+++|+|+.+.
T Consensus 343 -------------------------------~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ld 390 (490)
T KOG1259|consen 343 -------------------------------ECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELD 390 (490)
T ss_pred -------------------------------hhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHH
Confidence 12222334667888888888888774 5777888888999999987775
Q ss_pred h--hhhcCCCCceeecccccccCCchh
Q 044748 516 E--SFNQLSSLEYLQLFENSLEGIPEY 540 (602)
Q Consensus 516 ~--~l~~l~~L~~L~l~~N~l~~~~~~ 540 (602)
+ .++++|.|+.+.+.+|++..+|+.
T Consensus 391 eV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 391 EVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred HhcccccccHHHHHhhcCCCccccchH
Confidence 4 478888999999999998887764
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.05 E-value=2.8e-10 Score=123.71 Aligned_cols=157 Identities=20% Similarity=0.248 Sum_probs=105.0
Q ss_pred CccccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCcc-ccCCCCcc--CccccceecccCCCCCCCCcccccc
Q 044748 18 LPDLSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKS-LTSLPTGI--HSKYLKILNLWGCSNLNNFPEITSC 94 (602)
Q Consensus 18 ~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~ 94 (602)
.|+.......|...+-++.+. .++ .-..+++|++|-+..|.. ...++..+ .++.|++||+++|...+.+|..++.
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~-~~~-~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIE-HIA-GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred cccccchhheeEEEEeccchh-hcc-CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 444555556666666665432 222 223344788888877742 44555543 7888888888888777888888888
Q ss_pred cccchhccccc--cccCCccccCcccCceEecccccccccccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcc
Q 044748 95 HICIFELAEVG--IKELPSSIECLSNLRELLIMDCSELESISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIE 172 (602)
Q Consensus 95 ~~~L~~L~l~~--~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 172 (602)
+-+|++|++++ +..+|..++++..|.+|++..+.....++.....+++||+|.+.......... ....+..++
T Consensus 594 Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~-----~l~el~~Le 668 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKL-----LLKELENLE 668 (889)
T ss_pred hhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchh-----hHHhhhccc
Confidence 88888888888 78889999999999999999887666666666668999999887654211110 113445555
Q ss_pred cceeeeccc
Q 044748 173 RLASFKLKL 181 (602)
Q Consensus 173 ~L~~L~l~~ 181 (602)
+|+.+....
T Consensus 669 ~L~~ls~~~ 677 (889)
T KOG4658|consen 669 HLENLSITI 677 (889)
T ss_pred chhhheeec
Confidence 666555544
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=1.9e-10 Score=99.85 Aligned_cols=99 Identities=29% Similarity=0.385 Sum_probs=43.3
Q ss_pred cCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccc-cCCCCCcEEEccCCcccccch--hhhcCCCCcee
Q 044748 451 VKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESL-GQLSSLESLVLSNNKLERLPE--SFNQLSSLEYL 527 (602)
Q Consensus 451 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~-~~l~~L~~L~L~~n~l~~l~~--~l~~l~~L~~L 527 (602)
+.+|+.|++++|.+... . .+..++.|++|++++|+|+++...+ ..+++|+.|++++|+|..+.+ .+..+++|+.|
T Consensus 41 l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp -TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 44566666666665442 2 3566788888888888888886555 357888888888888866543 46778889999
Q ss_pred ecccccccCCchh----hhcccccccccc
Q 044748 528 QLFENSLEGIPEY----LRSLPSKLTSLN 552 (602)
Q Consensus 528 ~l~~N~l~~~~~~----l~~~~~~L~~L~ 552 (602)
++.+|+++.-+.. +..+| +|+.||
T Consensus 119 ~L~~NPv~~~~~YR~~vi~~lP-~Lk~LD 146 (175)
T PF14580_consen 119 SLEGNPVCEKKNYRLFVIYKLP-SLKVLD 146 (175)
T ss_dssp E-TT-GGGGSTTHHHHHHHH-T-T-SEET
T ss_pred eccCCcccchhhHHHHHHHHcC-hhheeC
Confidence 9999888764331 23333 666655
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=1.3e-11 Score=120.75 Aligned_cols=179 Identities=24% Similarity=0.386 Sum_probs=136.4
Q ss_pred CcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEec
Q 044748 335 KSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEIS 414 (602)
Q Consensus 335 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 414 (602)
.--...+++.|++ ..+|..+..+..|+.+.+..|.+..+|..+..+..|.+++++.|++ ..+|..+..++ |+.|.++
T Consensus 75 tdt~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 75 TDTVFADLSRNRF-SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred cchhhhhcccccc-ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEe
Confidence 3345567777764 5566667777788888888888888888888888888888888854 45666666666 7888888
Q ss_pred cCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCccc
Q 044748 415 NCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPES 494 (602)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~ 494 (602)
+|++.. +|. .++..+.|..|+.+.|.+. .+|..+.++.+|+.|.++.|.+..+|..
T Consensus 152 NNkl~~-lp~----------------------~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~E 207 (722)
T KOG0532|consen 152 NNKLTS-LPE----------------------EIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEE 207 (722)
T ss_pred cCcccc-CCc----------------------ccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHH
Confidence 876543 333 4556677888888887754 4555678888888888888888888877
Q ss_pred ccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCchhh
Q 044748 495 LGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPEYL 541 (602)
Q Consensus 495 ~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~l 541 (602)
+. .-.|..||+|.|++..+|..|..+..|++|-|.+|+++.=|..+
T Consensus 208 l~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 208 LC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred Hh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 77 44688899999999888888888999999999999988744443
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=3.5e-11 Score=111.13 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=44.1
Q ss_pred hhccccccEEeeeccCCCc----cCCcccCCCCCCcEEEcCcc---ccc-ccccc-------ccccccccEEeecCCCCc
Q 044748 218 LCMFKSLTSLEIVDCQNFK----RLPDELGNLKALQRLTVDRT---AIR-EVPES-------LGQLAILRRLKLTNCSGL 282 (602)
Q Consensus 218 l~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n---~l~-~l~~~-------~~~l~~L~~L~l~~~~~~ 282 (602)
+.....++.+++++|.+-. .+...+.+.+.|+..++++- ++. .+|+. +..+++|+.|++++|.+-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3445667777777766532 22233455566666666553 111 33332 334456666666666544
Q ss_pred ccccc----ccccCCCCcEEEeecC
Q 044748 283 ESISS----SIFKLKSLKSIVISHC 303 (602)
Q Consensus 283 ~~~~~----~~~~l~~L~~L~l~~~ 303 (602)
...+. -+.++..|++|.+.+|
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcC
Confidence 43222 2334555666666554
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.98 E-value=6.2e-11 Score=109.50 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=42.5
Q ss_pred cccCCCCCcccccccCCCCc----ccccchhccccccEEeeeccCCCccCCcc----c-CCCCCCcEEEcCccccc----
Q 044748 193 NMFSFKSLPSIKIIHCPNIE----SLPSSLCMFKSLTSLEIVDCQNFKRLPDE----L-GNLKALQRLTVDRTAIR---- 259 (602)
Q Consensus 193 ~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----~-~~l~~L~~L~l~~n~l~---- 259 (602)
.+..+++|+.|++++|.+.. .+...+..+++|+.|++.+|.+...-... + ...|.|+.+.+.+|.|+
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~ 287 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA 287 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence 34445555555555554432 22233444556666666666543321111 1 12456666666666555
Q ss_pred -cccccccccccccEEeecCCCC
Q 044748 260 -EVPESLGQLAILRRLKLTNCSG 281 (602)
Q Consensus 260 -~l~~~~~~l~~L~~L~l~~~~~ 281 (602)
.+...+...+.|+.|++++|.+
T Consensus 288 ~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 288 LALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhcchhhHHhcCCcccc
Confidence 1112233355666666666544
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=1e-09 Score=95.31 Aligned_cols=83 Identities=20% Similarity=0.168 Sum_probs=40.2
Q ss_pred hccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCc--ccccCCCCCcEEEccCCcccccch----hhhcCC
Q 044748 449 CMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVP--ESLGQLSSLESLVLSNNKLERLPE----SFNQLS 522 (602)
Q Consensus 449 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~L~~n~l~~l~~----~l~~l~ 522 (602)
..++.|++|++++|.+.+..+.....+++|++|++++|+|.++. ..+..+++|+.|++.+|.+..-+. .+..+|
T Consensus 61 ~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP 140 (175)
T PF14580_consen 61 PGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLP 140 (175)
T ss_dssp ---TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-T
T ss_pred cChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcC
Confidence 34556666666666655432222246788999999999987554 356778999999999999865553 367899
Q ss_pred CCceeeccc
Q 044748 523 SLEYLQLFE 531 (602)
Q Consensus 523 ~L~~L~l~~ 531 (602)
+|+.||-..
T Consensus 141 ~Lk~LD~~~ 149 (175)
T PF14580_consen 141 SLKVLDGQD 149 (175)
T ss_dssp T-SEETTEE
T ss_pred hhheeCCEE
Confidence 999988655
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2e-10 Score=109.12 Aligned_cols=181 Identities=18% Similarity=0.180 Sum_probs=96.9
Q ss_pred ccccccEEeeeccCCCccCC--cccCCCCCCcEEEcCccccc---cccccccccccccEEeecCCCCccccccc-cccCC
Q 044748 220 MFKSLTSLEIVDCQNFKRLP--DELGNLKALQRLTVDRTAIR---EVPESLGQLAILRRLKLTNCSGLESISSS-IFKLK 293 (602)
Q Consensus 220 ~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~n~l~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~ 293 (602)
++.+|+.+.+.++.... .+ .....|++++.|+++.|-+. .+......+|+|+.|+++.|......... -..++
T Consensus 119 n~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 45556666665544321 11 13445666666666666554 22333456666777777666544322111 12356
Q ss_pred CCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCccccc
Q 044748 294 SLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIRE 373 (602)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 373 (602)
.|+.|.++.|.. + + ..+.... ..+|+|+.|++.+|............+..|++|||++|.+.+
T Consensus 198 ~lK~L~l~~CGl-s-~--------------k~V~~~~-~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 198 HLKQLVLNSCGL-S-W--------------KDVQWIL-LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID 260 (505)
T ss_pred hhheEEeccCCC-C-H--------------HHHHHHH-HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc
Confidence 666777766631 1 1 1111111 226777777777764333333334455667777777777665
Q ss_pred CC--ccccccccCcEEeccCCCCCCc-cCcc-----ccCCCCCCeEEeccCCC
Q 044748 374 VP--KSLSQLAILRWLKLTNCSGLGR-ISSS-----IFKLKSLKSIEISNCSN 418 (602)
Q Consensus 374 l~--~~~~~l~~L~~L~l~~~~~~~~-~~~~-----~~~~~~L~~L~l~~~~~ 418 (602)
.+ ...+.++.|..|+++.|.+... .|.. ...+++|++|++..|++
T Consensus 261 ~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 261 FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 55 4455667777777777655321 2222 24567777777777665
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.93 E-value=5.4e-10 Score=121.51 Aligned_cols=121 Identities=21% Similarity=0.241 Sum_probs=65.7
Q ss_pred cEEecCCCCcCcCCccccCCCCCcEEEcCCCc--chhcchhhhccCCCCcEEeccCCccccCCCCcc-CccccceecccC
Q 044748 5 KEIDLSGSESLTKLPDLSRAENLKILRLDDCL--SLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGI-HSKYLKILNLWG 81 (602)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~l~~L~~L~Ls~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~~~L~~L~l~~ 81 (602)
+++.+-+++ ...++.-.++++|++|-+.++. +...-++.|..++.|++||+++|.....+|..+ .+-+||+|++++
T Consensus 526 rr~s~~~~~-~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 526 RRMSLMNNK-IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred eEEEEeccc-hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence 444444444 2233333444556666665554 222222335556666666666665556666666 566666666666
Q ss_pred CCCCCCCcccccccccchhccccc---cccCCccccCcccCceEecccc
Q 044748 82 CSNLNNFPEITSCHICIFELAEVG---IKELPSSIECLSNLRELLIMDC 127 (602)
Q Consensus 82 ~~~~~~~~~~~~~~~~L~~L~l~~---~~~l~~~~~~l~~L~~L~l~~~ 127 (602)
.. ...+|..+.++..|.+|++.. ...+|.....+++|++|.+...
T Consensus 605 t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 605 TG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred CC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 54 335666666666666666665 2333444444666666666544
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.92 E-value=9.2e-10 Score=112.17 Aligned_cols=179 Identities=26% Similarity=0.377 Sum_probs=134.7
Q ss_pred CCcccEEEEecCCCCccCCccccCCC-CccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEE
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLK-VLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIE 412 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 412 (602)
.+.++.+++.++.+ ..++....... +|+.|++++|.+..+|..+..++.|+.|++++|++. .++......+.|+.|+
T Consensus 115 ~~~l~~L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCccc-ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 45688888888774 45555566664 888999999998888777888889999999988654 4555444788888899
Q ss_pred eccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCc
Q 044748 413 ISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVP 492 (602)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~ 492 (602)
+++|++... |. .......|+++.+++|... ..+..+..+..+..+.+.+|++..++
T Consensus 193 ls~N~i~~l-~~----------------------~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~ 248 (394)
T COG4886 193 LSGNKISDL-PP----------------------EIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLP 248 (394)
T ss_pred ccCCccccC-ch----------------------hhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeecc
Confidence 988765432 22 2234455888888887533 34445777888888888889888877
Q ss_pred ccccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCch
Q 044748 493 ESLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPE 539 (602)
Q Consensus 493 ~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~ 539 (602)
..+..+++++.|++++|+++.++. +....+++.|++++|.+..++.
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred chhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 778888889999999999988876 7788889999999998887433
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.92 E-value=2.1e-09 Score=109.57 Aligned_cols=197 Identities=28% Similarity=0.356 Sum_probs=144.8
Q ss_pred EEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCC-CcccEEEEecCCCCccC
Q 044748 273 RLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMF-KSLKYLEIVDCQNFKRL 351 (602)
Q Consensus 273 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~L~~L~l~~~~~~~~~ 351 (602)
.+....+..... ...+..++.++.+++.++ .++ .++..... . ++|+.|++++|.+ ..+
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n-~i~-----------------~i~~~~~~-~~~nL~~L~l~~N~i-~~l 155 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNN-NIT-----------------DIPPLIGL-LKSNLKELDLSDNKI-ESL 155 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCc-ccc-----------------cCcccccc-chhhcccccccccch-hhh
Confidence 466666543222 233445578888888774 233 44443332 4 3899999999874 555
Q ss_pred CccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCC
Q 044748 352 PDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNID 431 (602)
Q Consensus 352 ~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 431 (602)
+..+..+++|+.|++++|++++++......+.|+.|++++|.+ ..+|........|+++.+++|.......
T Consensus 156 ~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~~~~-------- 226 (394)
T COG4886 156 PSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSIIELLS-------- 226 (394)
T ss_pred hhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCcceecch--------
Confidence 5668899999999999999999987776889999999999854 5667655566779999999986333322
Q ss_pred CCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcc
Q 044748 432 GGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKL 511 (602)
Q Consensus 432 ~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l 511 (602)
.+..+.++..+.+.+|+... .+..+..+++++.|++++|.++.++. +....+++.|++++|.+
T Consensus 227 ---------------~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 227 ---------------SLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ---------------hhhhcccccccccCCceeee-ccchhccccccceecccccccccccc-ccccCccCEEeccCccc
Confidence 45566777777777766443 35667888889999999999999986 88899999999999998
Q ss_pred cccch
Q 044748 512 ERLPE 516 (602)
Q Consensus 512 ~~l~~ 516 (602)
..++.
T Consensus 290 ~~~~~ 294 (394)
T COG4886 290 SNALP 294 (394)
T ss_pred cccch
Confidence 55543
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.89 E-value=1e-10 Score=114.75 Aligned_cols=154 Identities=24% Similarity=0.328 Sum_probs=68.5
Q ss_pred CCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEe
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEI 413 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 413 (602)
|..|+.+.+..|. ...+|..+..+..|+.++++.|++..+|..+..+| |+.|-+++|+ .+.+|..+...+.|..|++
T Consensus 97 f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 97 FVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhh
Confidence 3444444444433 23444444455555555555555554444333322 3444444442 2344444444455555555
Q ss_pred ccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcc
Q 044748 414 SNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE 493 (602)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~ 493 (602)
+.|.+....+ .++.+.+|+.|.+..|.+. .+|..+..+ .|..||+|.|++..||-
T Consensus 174 s~nei~slps-----------------------ql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis~iPv 228 (722)
T KOG0532|consen 174 SKNEIQSLPS-----------------------QLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKISYLPV 228 (722)
T ss_pred hhhhhhhchH-----------------------HhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCceeecch
Confidence 5443332211 2334444444444444322 233333322 24455555555555555
Q ss_pred cccCCCCCcEEEccCCcccccc
Q 044748 494 SLGQLSSLESLVLSNNKLERLP 515 (602)
Q Consensus 494 ~~~~l~~L~~L~L~~n~l~~l~ 515 (602)
+|..++.|++|-|.+|.+++=|
T Consensus 229 ~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred hhhhhhhheeeeeccCCCCCCh
Confidence 5555555555555555554433
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=8.2e-11 Score=106.14 Aligned_cols=173 Identities=22% Similarity=0.218 Sum_probs=122.1
Q ss_pred CCcEEecCCCCcCc-CCcc-ccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCcc---Ccccccee
Q 044748 3 NLKEIDLSGSESLT-KLPD-LSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGI---HSKYLKIL 77 (602)
Q Consensus 3 ~L~~L~l~~~~~~~-~~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~---~~~~L~~L 77 (602)
.|++||||+..+.. ++-. +..|.+|+.|.|.+..+...+...++.-.+|+.|+++.|..+++..... .|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47889999887543 3334 8889999999999999888888889999999999999998777554444 89999999
Q ss_pred cccCCCCCCCCcccc-cc-cccchhccccc------cccCCccccCcccCceEecccccccc-cccccccccCCccEEEe
Q 044748 78 NLWGCSNLNNFPEIT-SC-HICIFELAEVG------IKELPSSIECLSNLRELLIMDCSELE-SISSSIFKLKSLKSIVI 148 (602)
Q Consensus 78 ~l~~~~~~~~~~~~~-~~-~~~L~~L~l~~------~~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l 148 (602)
+++.|....+.-... .+ .++|..|++++ ...+..-..++++|.+||+++|..+. .....|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 999997655432222 22 46788888887 22233334678888888888875544 23344777888888888
Q ss_pred eCCCCccccccCCCCCCCCCcCcccceeeeccc
Q 044748 149 SHCSNFKRFLEIPSCNTDGCTGIERLASFKLKL 181 (602)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 181 (602)
+.|.... | ...-.+...+.|.+|++.+
T Consensus 346 sRCY~i~--p----~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 346 SRCYDII--P----ETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hhhcCCC--h----HHeeeeccCcceEEEEecc
Confidence 8875432 1 0113455666777776665
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=3.2e-09 Score=75.57 Aligned_cols=59 Identities=39% Similarity=0.648 Sum_probs=49.9
Q ss_pred cccceEeecCcccccCc-ccccCCCCCcEEEccCCcccccch-hhhcCCCCceeecccccc
Q 044748 476 KCLTVLIVKGTAIREVP-ESLGQLSSLESLVLSNNKLERLPE-SFNQLSSLEYLQLFENSL 534 (602)
Q Consensus 476 ~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~N~l 534 (602)
|+|++|++++|+++.+| ..|.++++|++|++++|+++.++. .|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46888999999998887 467888999999999999987775 588899999999999875
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.81 E-value=6.3e-09 Score=110.96 Aligned_cols=108 Identities=34% Similarity=0.495 Sum_probs=96.5
Q ss_pred CCCeEEeeccccccCCChhhhCCcccceEeecCcccc-cCcccccCCCCCcEEEccCCcc-cccchhhhcCCCCceeecc
Q 044748 453 NLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIR-EVPESLGQLSSLESLVLSNNKL-ERLPESFNQLSSLEYLQLF 530 (602)
Q Consensus 453 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~l-~~l~~~l~~l~~L~~L~l~ 530 (602)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|++ ..+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999999999999999999999999999997 8898899999999999999999 5889999999999999999
Q ss_pred cccccC-Cchhhhcccccccccccceeeccc
Q 044748 531 ENSLEG-IPEYLRSLPSKLTSLNLSIDLRYC 560 (602)
Q Consensus 531 ~N~l~~-~~~~l~~~~~~L~~L~l~~~~~~~ 560 (602)
+|++++ +|..+.....++..++++.|..-|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 999998 999887766567777777776555
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.80 E-value=1.7e-10 Score=109.10 Aligned_cols=270 Identities=21% Similarity=0.285 Sum_probs=131.6
Q ss_pred CcEEecCCCCcCcC--Ccc-ccCCCCCcEEEcCCCcchhc--chhhhccCCCCcEEeccCCccccCC--CCcc-Cccccc
Q 044748 4 LKEIDLSGSESLTK--LPD-LSRAENLKILRLDDCLSLTE--THSSIQYLNKLEFLTLEMCKSLTSL--PTGI-HSKYLK 75 (602)
Q Consensus 4 L~~L~l~~~~~~~~--~~~-~~~l~~L~~L~Ls~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~l--~~~~-~~~~L~ 75 (602)
|+.|.+.||.-.+. +.. ..+||+++.|++.+|..++. ....-..|++|++|++..|..++.. -... .|++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 67889999976653 334 77899999999999985542 2334456899999999998665532 2222 899999
Q ss_pred eecccCCCCCCC--CcccccccccchhccccccccCC-----ccccCcccCceEeccccccccccc--ccccccCCccEE
Q 044748 76 ILNLWGCSNLNN--FPEITSCHICIFELAEVGIKELP-----SSIECLSNLRELLIMDCSELESIS--SSIFKLKSLKSI 146 (602)
Q Consensus 76 ~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~-----~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L 146 (602)
+++++.|+.... +.....++..++.+...+-.+++ ..-..+..+.++++.+|..+.... ..-..+.+|+.+
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL 299 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence 999999874322 22223344445555444411111 111223334455555553333211 112234556666
Q ss_pred EeeCCCCccccccCCCCCCCCCcCcccceeeecccCCCCCCccc--cccccCCCCCcccccccCCCCc--ccccchhccc
Q 044748 147 VISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSL--PINMFSFKSLPSIKIIHCPNIE--SLPSSLCMFK 222 (602)
Q Consensus 147 ~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l--~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~ 222 (602)
..+++......+- ..-..+..+|+.|.+.. |..++.. ..--.+++.|+.+++..+.... .+...-.+++
T Consensus 300 ~~s~~t~~~d~~l-----~aLg~~~~~L~~l~l~~--c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 300 CYSSCTDITDEVL-----WALGQHCHNLQVLELSG--CQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred cccCCCCCchHHH-----HHHhcCCCceEEEeccc--cchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 6665544332210 02223445555555555 3332211 1111224455555555542211 1111123445
Q ss_pred cccEEeeeccCCCccC-----CcccCCCCCCcEEEcCccccc--cccccccccccccEEeecCCC
Q 044748 223 SLTSLEIVDCQNFKRL-----PDELGNLKALQRLTVDRTAIR--EVPESLGQLAILRRLKLTNCS 280 (602)
Q Consensus 223 ~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~n~l~--~l~~~~~~l~~L~~L~l~~~~ 280 (602)
.|+++.++.|...... ...-..+..++.+.++++... ..-+.+..+++|+++++-+|.
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 5555555554433221 111123344445555554322 122223444455555554443
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.59 E-value=1e-07 Score=101.70 Aligned_cols=110 Identities=25% Similarity=0.365 Sum_probs=97.9
Q ss_pred CCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCc
Q 044748 407 SLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGT 486 (602)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n 486 (602)
.++.|++++|.+.+.+|. .+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~----------------------~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N 476 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPN----------------------DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN 476 (623)
T ss_pred EEEEEECCCCCccccCCH----------------------HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC
Confidence 377889999988887777 7889999999999999999999999999999999999999
Q ss_pred ccc-cCcccccCCCCCcEEEccCCcc-cccchhhhc-CCCCceeecccccccC-Cc
Q 044748 487 AIR-EVPESLGQLSSLESLVLSNNKL-ERLPESFNQ-LSSLEYLQLFENSLEG-IP 538 (602)
Q Consensus 487 ~l~-~l~~~~~~l~~L~~L~L~~n~l-~~l~~~l~~-l~~L~~L~l~~N~l~~-~~ 538 (602)
.++ .+|..+..+++|+.|+|++|++ ..+|..+.. ..++..+++.+|...+ .|
T Consensus 477 ~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 477 SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 997 7899999999999999999999 689988765 3577899999998766 54
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.2e-09 Score=98.73 Aligned_cols=156 Identities=22% Similarity=0.290 Sum_probs=84.3
Q ss_pred CCCcEEEcCccccc--cccccccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcch
Q 044748 246 KALQRLTVDRTAIR--EVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRI 323 (602)
Q Consensus 246 ~~L~~L~l~~n~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 323 (602)
+.++.+|+++..|+ ++.-.+..+.+|+.|.+.++.....+...++.-.+|+.+++++|..++.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~--------------- 249 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE--------------- 249 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch---------------
Confidence 34677777776665 3333456677777777777766666666677777777777777766651
Q ss_pred hccccccccCCCcccEEEEecCCCCccCCcc-cc-CCCCccEEEecCcc--c--ccCCccccccccCcEEeccCCCCC-C
Q 044748 324 ERLASSNLCMFKSLKYLEIVDCQNFKRLPDE-LG-NLKVLKRLTIDGTA--I--REVPKSLSQLAILRWLKLTNCSGL-G 396 (602)
Q Consensus 324 ~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~-~~~~L~~L~l~~n~--i--~~l~~~~~~l~~L~~L~l~~~~~~-~ 396 (602)
......+..++.|.+|+++.|......... +. --++|+.|++++.. + ..+......+|+|..|+++.|... .
T Consensus 250 -n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 250 -NALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred -hHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence 122223334666666776666543322111 11 12345556665521 1 122223345566666666665332 1
Q ss_pred ccCccccCCCCCCeEEeccCC
Q 044748 397 RISSSIFKLKSLKSIEISNCS 417 (602)
Q Consensus 397 ~~~~~~~~~~~L~~L~l~~~~ 417 (602)
.....+.+++.|++|.++.|.
T Consensus 329 ~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 329 DCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hHHHHHHhcchheeeehhhhc
Confidence 222344556666666666654
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.54 E-value=8.9e-08 Score=68.06 Aligned_cols=58 Identities=29% Similarity=0.411 Sum_probs=48.0
Q ss_pred CCCcEEecCCCCcCcCCc-c-ccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCc
Q 044748 2 VNLKEIDLSGSESLTKLP-D-LSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCK 60 (602)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~-~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~ 60 (602)
++|++|++++|++ ..++ . |.++++|++|++++|.+...-+..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTE-SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCC-CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 5788999999984 5555 4 8999999999999988877667788999999999999883
No 44
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.53 E-value=4.5e-09 Score=99.66 Aligned_cols=270 Identities=19% Similarity=0.266 Sum_probs=174.2
Q ss_pred CCCCcEEecCCCCcCcC--Ccc-ccCCCCCcEEEcCCCcchhc-chh-hhccCCCCcEEeccCCccccC--CCCcc-Ccc
Q 044748 1 LVNLKEIDLSGSESLTK--LPD-LSRAENLKILRLDDCLSLTE-THS-SIQYLNKLEFLTLEMCKSLTS--LPTGI-HSK 72 (602)
Q Consensus 1 l~~L~~L~l~~~~~~~~--~~~-~~~l~~L~~L~Ls~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~--l~~~~-~~~ 72 (602)
.+++++|++.+|..+++ +-. -.+|++|+.|++..|..++. .-. -...+++|+++++++|..+.. +.... ++.
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~ 242 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCK 242 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccch
Confidence 36889999999986653 233 66899999999999875553 223 455699999999999987764 22222 788
Q ss_pred ccceecccCCCCCCC--Ccccccccccchhccccc---ccc--CCccccCcccCceEeccccccccccc--ccccccCCc
Q 044748 73 YLKILNLWGCSNLNN--FPEITSCHICIFELAEVG---IKE--LPSSIECLSNLRELLIMDCSELESIS--SSIFKLKSL 143 (602)
Q Consensus 73 ~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~---~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L 143 (602)
.++.+.+.+|.-.+. +-..-..+.-+..+++.+ +.. +-..-..+..|+.++.++|...+..+ .-..++++|
T Consensus 243 ~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L 322 (483)
T KOG4341|consen 243 ELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNL 322 (483)
T ss_pred hhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCce
Confidence 899998888753321 111112233344444333 111 11122457889999999987655322 224567999
Q ss_pred cEEEeeCCCCccccccCCCCCCCCC-cCcccceeeecccCCCCCCccccccccCCCCCcccccccCCCCccc-----ccc
Q 044748 144 KSIVISHCSNFKRFLEIPSCNTDGC-TGIERLASFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCPNIESL-----PSS 217 (602)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-----~~~ 217 (602)
+.+-+..|+.....- ...+ ..++.|+.+++...++....++..--.+++.++.+.+++|...... ...
T Consensus 323 ~~l~l~~c~~fsd~~------ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 323 QVLELSGCQQFSDRG------FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred EEEeccccchhhhhh------hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 999999997654321 0222 3568899999988333322334444456899999999988654432 222
Q ss_pred hhccccccEEeeeccCCCc-cCCcccCCCCCCcEEEcCcc-ccc--cccccccccccccEEee
Q 044748 218 LCMFKSLTSLEIVDCQNFK-RLPDELGNLKALQRLTVDRT-AIR--EVPESLGQLAILRRLKL 276 (602)
Q Consensus 218 l~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n-~l~--~l~~~~~~l~~L~~L~l 276 (602)
-.....++.+.+.++..+. ..-..+..+++|+.+++..+ +++ .+.....++|+++....
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 2456789999999998754 23344678899999999887 444 33333456777765544
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.47 E-value=6.4e-07 Score=87.57 Aligned_cols=163 Identities=22% Similarity=0.351 Sum_probs=87.8
Q ss_pred CCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchh
Q 044748 358 LKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIE 437 (602)
Q Consensus 358 ~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 437 (602)
+.+++.|+++++.++.+|. -.++|+.|.+.+|.....+|..+ .++|++|++++|.....+|.
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------------- 112 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------------- 112 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-------------
Confidence 4566666666666666651 23457777777765555555433 35677777777643333332
Q ss_pred hhhhhccccchhccCCCCeEEeecccc--ccCCChhhhCCcccceEeecCcc-c--ccCcccccCCCCCcEEEccCCccc
Q 044748 438 RLASFKLRLDLCMVKNLTSLKIIDCQK--FKRLPNEIGNSKCLTVLIVKGTA-I--REVPESLGQLSSLESLVLSNNKLE 512 (602)
Q Consensus 438 ~l~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~l~~~~~L~~L~L~~n~-l--~~l~~~~~~l~~L~~L~L~~n~l~ 512 (602)
+|+.|++..+.. ...+|. +|+.|.+.++. . ..+|..++ ++|+.|++++|...
T Consensus 113 ---------------sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i 169 (426)
T PRK15386 113 ---------------SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI 169 (426)
T ss_pred ---------------ccceEEeCCCCCcccccCcc------hHhheeccccccccccccccccC--CcccEEEecCCCcc
Confidence 466666654332 222332 45666664422 1 12222222 57888888888866
Q ss_pred ccchhhhcCCCCceeecccccccCCchhhhcccccccccccceeeccccccccccc
Q 044748 513 RLPESFNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLRYCLKLDSNEL 568 (602)
Q Consensus 513 ~l~~~l~~l~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~~~~~~L~~~~l 568 (602)
.+|..+- .+|+.|+++.|....+.-....+|+++ .|+ +.+|..+....+
T Consensus 170 ~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~----f~n~lkL~~~~f 218 (426)
T PRK15386 170 ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DID----LQNSVLLSPDVF 218 (426)
T ss_pred cCccccc--ccCcEEEecccccccccCccccccccc-Eec----hhhhcccCHHHh
Confidence 5664432 578888888775333222223455555 433 334555444333
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.47 E-value=1.7e-08 Score=102.89 Aligned_cols=174 Identities=27% Similarity=0.271 Sum_probs=83.6
Q ss_pred CCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEe
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEI 413 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 413 (602)
+.+++.+++.+|.+.+.. ..+..+++|+.|++++|.|+.+. .+..++.|+.|++.+|.+.. +. .+..++.|+.+++
T Consensus 94 ~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~-~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISD-IS-GLESLKSLKLLDL 169 (414)
T ss_pred ccceeeeeccccchhhcc-cchhhhhcchheecccccccccc-chhhccchhhheeccCcchh-cc-CCccchhhhcccC
Confidence 445555555554432221 11344555555555555555443 23344445555555553321 11 2233455555555
Q ss_pred ccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcc
Q 044748 414 SNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE 493 (602)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~ 493 (602)
++|.+...-+. . ...+.+++.+++..|.+...- .+.....+..+++..|.++.+..
T Consensus 170 ~~n~i~~ie~~---------------------~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~~ 225 (414)
T KOG0531|consen 170 SYNRIVDIEND---------------------E-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLEG 225 (414)
T ss_pred Ccchhhhhhhh---------------------h-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceeccC
Confidence 55433321110 0 134455555555555543321 12223334444555666555432
Q ss_pred cccCCCC--CcEEEccCCcccccchhhhcCCCCceeecccccccC
Q 044748 494 SLGQLSS--LESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 494 ~~~~l~~--L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~ 536 (602)
+..+.. |+.+++++|++..++..+..+..+..|++.+|++..
T Consensus 226 -l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 226 -LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred -cccchhHHHHHHhcccCccccccccccccccccccchhhccccc
Confidence 223333 677777777776665556666777777777776655
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.46 E-value=1.9e-08 Score=102.54 Aligned_cols=54 Identities=30% Similarity=0.265 Sum_probs=25.5
Q ss_pred ccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCcc-ccccccCcEEeccCC
Q 044748 337 LKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKS-LSQLAILRWLKLTNC 392 (602)
Q Consensus 337 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~-~~~l~~L~~L~l~~~ 392 (602)
|+.|++++|.+.+. ..+..++.|+.+++++|.++.+... ...+.+++.+++.+|
T Consensus 142 L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 142 LKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred hhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 44455555443221 1233355555556655555544332 244455555555554
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.45 E-value=2.9e-08 Score=100.57 Aligned_cols=111 Identities=30% Similarity=0.257 Sum_probs=84.9
Q ss_pred chhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcc-cccCCCCCcEEEccCCcccccchhhhcCCCCc
Q 044748 447 DLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE-SLGQLSSLESLVLSNNKLERLPESFNQLSSLE 525 (602)
Q Consensus 447 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~ 525 (602)
++.-++.++.|+|++|++...- .+..++.|++|||++|.+..+|. ...++. |+.|.++||.++++ .++.++.+|+
T Consensus 182 SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~ 257 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLY 257 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhh
Confidence 4455688999999998876543 67889999999999999998884 334554 99999999999887 4678899999
Q ss_pred eeecccccccCCc--hhhhcccccccccccceeeccccc
Q 044748 526 YLQLFENSLEGIP--EYLRSLPSKLTSLNLSIDLRYCLK 562 (602)
Q Consensus 526 ~L~l~~N~l~~~~--~~l~~~~~~L~~L~l~~~~~~~~~ 562 (602)
.||++.|-|.+.. .-+-.+. .|+.|.+.+|+.-|..
T Consensus 258 ~LDlsyNll~~hseL~pLwsLs-~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSELEPLWSLS-SLIVLWLEGNPLCCAP 295 (1096)
T ss_pred ccchhHhhhhcchhhhHHHHHH-HHHHHhhcCCccccCH
Confidence 9999999887621 1223344 7888888877766643
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.37 E-value=3.6e-07 Score=59.21 Aligned_cols=37 Identities=41% Similarity=0.609 Sum_probs=19.9
Q ss_pred CCcEEEccCCcccccchhhhcCCCCceeecccccccC
Q 044748 500 SLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 500 ~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~ 536 (602)
+|++|++++|+|+.+|..+.++++|++|++++|+|+.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555555545555555555555555554
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.30 E-value=7.8e-07 Score=57.63 Aligned_cols=40 Identities=35% Similarity=0.519 Sum_probs=34.2
Q ss_pred cccceEeecCcccccCcccccCCCCCcEEEccCCcccccc
Q 044748 476 KCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLP 515 (602)
Q Consensus 476 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~ 515 (602)
++|++|++++|+|+++|..+.++++|+.|++++|+|++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4689999999999999887999999999999999998775
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=2e-08 Score=101.66 Aligned_cols=177 Identities=26% Similarity=0.243 Sum_probs=108.0
Q ss_pred CCcccEEEEecCCCCccCCccccCC-CCccEEEecCc--ccccCCcc----c-cc--cccCcEEeccCCCCCCccCcccc
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNL-KVLKRLTIDGT--AIREVPKS----L-SQ--LAILRWLKLTNCSGLGRISSSIF 403 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n--~i~~l~~~----~-~~--l~~L~~L~l~~~~~~~~~~~~~~ 403 (602)
+.+|++|.+.+|.+... .++..+ ..|++|.-.+. .+..+-.. + .. --.|...+.++|.+. .+-..+.
T Consensus 108 F~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD~SLq 184 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMDESLQ 184 (1096)
T ss_pred ccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHHHHHH
Confidence 78999999999986441 112111 23444333221 11110000 0 00 123445555555332 3334455
Q ss_pred CCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEee
Q 044748 404 KLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIV 483 (602)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 483 (602)
-++.++.|+++.|++.+.- .+..++.|+.|+|+.|.+.....-...++. |..|.+
T Consensus 185 ll~ale~LnLshNk~~~v~------------------------~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD------------------------NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred HHHHhhhhccchhhhhhhH------------------------HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 5666777777776544321 345667777777777765443332333343 999999
Q ss_pred cCcccccCcccccCCCCCcEEEccCCcccccch--hhhcCCCCceeecccccccCCch
Q 044748 484 KGTAIREVPESLGQLSSLESLVLSNNKLERLPE--SFNQLSSLEYLQLFENSLEGIPE 539 (602)
Q Consensus 484 ~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~--~l~~l~~L~~L~l~~N~l~~~~~ 539 (602)
++|.++++- ++.++++|+.||+++|-|....+ -+..+..|+.|+|.||++.+-|.
T Consensus 240 rnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 240 RNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred cccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 999999985 68999999999999999854432 25567889999999999988664
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.23 E-value=1.3e-07 Score=75.73 Aligned_cols=101 Identities=23% Similarity=0.344 Sum_probs=71.6
Q ss_pred CCeEEeecccccc--CCChhhhCCcccceEeecCcccccCcccccC-CCCCcEEEccCCcccccchhhhcCCCCceeecc
Q 044748 454 LTSLKIIDCQKFK--RLPNEIGNSKCLTVLIVKGTAIREVPESLGQ-LSSLESLVLSNNKLERLPESFNQLSSLEYLQLF 530 (602)
Q Consensus 454 L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~-l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~ 530 (602)
+..++|++|++.- ..+..+.....|+..+|++|.+.++|..|.. ++..+.+++++|.|..+|..++.++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 4556677776432 2233455566777788888888888876644 357888888888888888888888888888888
Q ss_pred cccccCCchhhhcccccccccccce
Q 044748 531 ENSLEGIPEYLRSLPSKLTSLNLSI 555 (602)
Q Consensus 531 ~N~l~~~~~~l~~~~~~L~~L~l~~ 555 (602)
.|++...|..+..+- ++-.||...
T Consensus 109 ~N~l~~~p~vi~~L~-~l~~Lds~~ 132 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLI-KLDMLDSPE 132 (177)
T ss_pred cCccccchHHHHHHH-hHHHhcCCC
Confidence 888887777766643 555555443
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=2.3e-07 Score=74.33 Aligned_cols=93 Identities=29% Similarity=0.303 Sum_probs=79.0
Q ss_pred hhccCCCCeEEeeccccccCCChhh-hCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccchhhhcCCCCce
Q 044748 448 LCMVKNLTSLKIIDCQKFKRLPNEI-GNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPESFNQLSSLEY 526 (602)
Q Consensus 448 ~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~ 526 (602)
+.....|+..++++|.+.+ +|..+ ..++..+.+++++|+|..+|..+..++.|+.|+++.|.+...|..+..+.++-+
T Consensus 49 l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence 4445667778999987554 44444 456789999999999999999999999999999999999888888888999999
Q ss_pred eecccccccCCchhh
Q 044748 527 LQLFENSLEGIPEYL 541 (602)
Q Consensus 527 L~l~~N~l~~~~~~l 541 (602)
|+..+|.+..+|-++
T Consensus 128 Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 128 LDSPENARAEIDVDL 142 (177)
T ss_pred hcCCCCccccCcHHH
Confidence 999999998888763
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.07 E-value=1.8e-05 Score=77.70 Aligned_cols=135 Identities=27% Similarity=0.401 Sum_probs=87.9
Q ss_pred CCcccEEEEecCCCCccCCccccCCCCccEEEecC-cccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEE
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDG-TAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIE 412 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 412 (602)
+.++++|++++|. +..+|. -.++|++|.+++ +.++.+|..+ .++|++|++.+|.....+| ++|+.|+
T Consensus 51 ~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~ 118 (426)
T PRK15386 51 ARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLE 118 (426)
T ss_pred hcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccceEE
Confidence 5789999999985 555552 234799999988 6677777654 3689999999996554454 4577888
Q ss_pred eccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeecccccc--CCChhhhCCcccceEeecCccccc
Q 044748 413 ISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFK--RLPNEIGNSKCLTVLIVKGTAIRE 490 (602)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~L~~n~l~~ 490 (602)
+..+.. ..++.+| ++|+.|.+.+++... ..+. .-.++|++|+++++....
T Consensus 119 L~~n~~-~~L~~LP-------------------------ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 119 IKGSAT-DSIKNVP-------------------------NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII 170 (426)
T ss_pred eCCCCC-cccccCc-------------------------chHhheecccccccccccccc--ccCCcccEEEecCCCccc
Confidence 865432 1222222 356666664432111 1111 123578888888888777
Q ss_pred CcccccCCCCCcEEEccCCc
Q 044748 491 VPESLGQLSSLESLVLSNNK 510 (602)
Q Consensus 491 l~~~~~~l~~L~~L~L~~n~ 510 (602)
+|..++ .+|+.|+++.+.
T Consensus 171 LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 171 LPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred Cccccc--ccCcEEEecccc
Confidence 776555 488888888764
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=1.4e-06 Score=79.37 Aligned_cols=184 Identities=20% Similarity=0.182 Sum_probs=102.2
Q ss_pred CCcccEEEEecCCCCc--cCCccccCCCCccEEEecCcccccCCccc-cccccCcEEeccCCCCC-CccCccccCCCCCC
Q 044748 334 FKSLKYLEIVDCQNFK--RLPDELGNLKVLKRLTIDGTAIREVPKSL-SQLAILRWLKLTNCSGL-GRISSSIFKLKSLK 409 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~i~~l~~~~-~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~ 409 (602)
...++++++.+|.+.+ .+...+.++|.|+.|+++.|.+...-... ....+|+.|-+.+..+. .........+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4566677777766544 22334556777777777776655211122 23456666666665332 12223444566666
Q ss_pred eEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeecccccc--CCChhhhCCcccceEeecCcc
Q 044748 410 SIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFK--RLPNEIGNSKCLTVLIVKGTA 487 (602)
Q Consensus 410 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~L~~n~ 487 (602)
+|.++.|.......+. .+.+. .-+.+..|....|.... ..-..-.-+|++..+.+..+.
T Consensus 150 elHmS~N~~rq~n~Dd--------~c~e~-----------~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDD--------NCIED-----------WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred hhhhccchhhhhcccc--------ccccc-----------cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 7766665332211110 00000 11123333333322110 111112345677888888887
Q ss_pred cccC--cccccCCCCCcEEEccCCcccccch--hhhcCCCCceeecccccccC
Q 044748 488 IREV--PESLGQLSSLESLVLSNNKLERLPE--SFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 488 l~~l--~~~~~~l~~L~~L~L~~n~l~~l~~--~l~~l~~L~~L~l~~N~l~~ 536 (602)
+++. .+.+..++.+..|+|+.|+|.++.+ .+..+++|+.|.+++|++.+
T Consensus 211 lK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 211 LKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 7644 3556777888889999999877653 47788999999999998876
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=4.7e-06 Score=75.97 Aligned_cols=79 Identities=11% Similarity=0.126 Sum_probs=48.4
Q ss_pred CCcccEEEEecCCCCcc-CCccccCCCCccEEEecCcccccCC--ccccccccCcEEeccCCCCCCccCc------cccC
Q 044748 334 FKSLKYLEIVDCQNFKR-LPDELGNLKVLKRLTIDGTAIREVP--KSLSQLAILRWLKLTNCSGLGRISS------SIFK 404 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~------~~~~ 404 (602)
+|++..+.+..|++.+. .......++.+.-|.++.++|.+.. +.+..++.|+.|.+.++++...+.. .+..
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 67777777777665332 2234555666667777777776433 4566778888888888877654332 2344
Q ss_pred CCCCCeEE
Q 044748 405 LKSLKSIE 412 (602)
Q Consensus 405 ~~~L~~L~ 412 (602)
+++++.|+
T Consensus 278 L~~v~vLN 285 (418)
T KOG2982|consen 278 LTKVQVLN 285 (418)
T ss_pred ccceEEec
Confidence 55555554
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.84 E-value=3.6e-06 Score=75.71 Aligned_cols=193 Identities=16% Similarity=0.099 Sum_probs=124.7
Q ss_pred CCcccEEEEecCCCCccCCc----cccCCCCccEEEecCcccc----cCC-------ccccccccCcEEeccCCCCCCcc
Q 044748 334 FKSLKYLEIVDCQNFKRLPD----ELGNLKVLKRLTIDGTAIR----EVP-------KSLSQLAILRWLKLTNCSGLGRI 398 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~n~i~----~l~-------~~~~~l~~L~~L~l~~~~~~~~~ 398 (602)
+..+..+++++|.+.+.-.. .+.+-.+|+...+++-... .++ ..+..||+|+.++++.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 67889999999987654333 3455677888888763221 222 34567899999999999887666
Q ss_pred Cc----cccCCCCCCeEEeccCCCccccccCCCCCCCCCcchh-hhhhhccccchhccCCCCeEEeeccccccCC----C
Q 044748 399 SS----SIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIE-RLASFKLRLDLCMVKNLTSLKIIDCQKFKRL----P 469 (602)
Q Consensus 399 ~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~ 469 (602)
|+ .+++-+.|.+|.+++|-.-. +. +.++. .+.-.-...-...-|.|+......|.+..-. .
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp-~a---------G~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a 178 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGP-IA---------GGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSA 178 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCc-cc---------hhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHH
Confidence 54 45667889999999974321 11 11110 0000000012344577888888887754421 1
Q ss_pred hhhhCCcccceEeecCcccc--cC----cccccCCCCCcEEEccCCcccccc-----hhhhcCCCCceeecccccccC
Q 044748 470 NEIGNSKCLTVLIVKGTAIR--EV----PESLGQLSSLESLVLSNNKLERLP-----ESFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 470 ~~l~~~~~L~~L~L~~n~l~--~l----~~~~~~l~~L~~L~L~~n~l~~l~-----~~l~~l~~L~~L~l~~N~l~~ 536 (602)
..+..-..|+++.+.+|.|. .+ -.....+.+|+.||+.+|-++... ..+...+.|++|.+.+|-++.
T Consensus 179 ~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 179 ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 12333457999999999886 11 123467789999999999875432 234456679999999998876
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.73 E-value=5.2e-06 Score=88.52 Aligned_cols=107 Identities=25% Similarity=0.279 Sum_probs=72.2
Q ss_pred CCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCc-cCCccccCCCCccEEEecCccc
Q 044748 293 KSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFK-RLPDELGNLKVLKRLTIDGTAI 371 (602)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~i 371 (602)
.+|++|++++...+. ...+......+|+|++|.+.+-.+.. ++-....++++|..||+++.++
T Consensus 122 ~nL~~LdI~G~~~~s----------------~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI 185 (699)
T KOG3665|consen 122 QNLQHLDISGSELFS----------------NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI 185 (699)
T ss_pred HhhhhcCccccchhh----------------ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc
Confidence 578888887754333 34555556668888888888755433 2233456788888888888888
Q ss_pred ccCCccccccccCcEEeccCCCCCC-ccCccccCCCCCCeEEeccC
Q 044748 372 REVPKSLSQLAILRWLKLTNCSGLG-RISSSIFKLKSLKSIEISNC 416 (602)
Q Consensus 372 ~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~ 416 (602)
+.+ .+++.+++|+.|.+.+-.+.. .--..+..+++|+.||+|.-
T Consensus 186 ~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 186 SNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred cCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 877 567788888888888754432 11124556788888888763
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.67 E-value=7.4e-06 Score=73.72 Aligned_cols=172 Identities=12% Similarity=0.002 Sum_probs=97.5
Q ss_pred cccCcccCceEeccccccccccccc----ccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecccCCCCCC
Q 044748 112 SIECLSNLRELLIMDCSELESISSS----IFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSP 187 (602)
Q Consensus 112 ~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 187 (602)
++-.||+|+.+++++|.+....|.. +++-+.|++|.+.+|.+-...- +.++ +.|.+|..
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG-------~rig--kal~~la~-------- 149 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG-------GRIG--KALFHLAY-------- 149 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccch-------hHHH--HHHHHHHH--------
Confidence 4556777888888877655444332 4556777777777764421100 0000 11221111
Q ss_pred ccccccccCCCCCcccccccCCCCccc----ccchhccccccEEeeeccCCCcc-----CCcccCCCCCCcEEEcCcccc
Q 044748 188 QSLPINMFSFKSLPSIKIIHCPNIESL----PSSLCMFKSLTSLEIVDCQNFKR-----LPDELGNLKALQRLTVDRTAI 258 (602)
Q Consensus 188 ~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~n~l 258 (602)
......-|.|+.+....|++.... ...+.....|+.+.+..|.+... +-..+..+.+|+.||+..|.+
T Consensus 150 ---nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 150 ---NKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred ---HhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 112334577888887777543211 12234446889999988876432 112345678899999999987
Q ss_pred c-----cccccccccccccEEeecCCCCcccccccc----c--cCCCCcEEEeecC
Q 044748 259 R-----EVPESLGQLAILRRLKLTNCSGLESISSSI----F--KLKSLKSIVISHC 303 (602)
Q Consensus 259 ~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~--~l~~L~~L~l~~~ 303 (602)
+ .+...+...+.|+.|.+.+|-....-...+ . ..|+|..|-..++
T Consensus 227 t~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 227 TLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred hhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence 7 223334455678999998886554322221 1 2466777766664
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=3.1e-05 Score=82.73 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=7.9
Q ss_pred CCCCcEEEccCCcc
Q 044748 498 LSSLESLVLSNNKL 511 (602)
Q Consensus 498 l~~L~~L~L~~n~l 511 (602)
+++|+.||.|++.+
T Consensus 249 LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 249 LPELRFLDCSGTDI 262 (699)
T ss_pred CccccEEecCCcch
Confidence 45555555555554
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.35 E-value=0.00034 Score=60.56 Aligned_cols=104 Identities=18% Similarity=0.176 Sum_probs=71.6
Q ss_pred CCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCcccccccccc--ccccccccEEe
Q 044748 198 KSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPES--LGQLAILRRLK 275 (602)
Q Consensus 198 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~--~~~l~~L~~L~ 275 (602)
.+...+++++|.+... +.|..++.|..|.+.+|+++...|..-..+++|+.|.+.+|.|..+.+. +..+|+|+.|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4566667777654332 2344577888888888888777666656677888888888887755432 56788888888
Q ss_pred ecCCCCcccc---ccccccCCCCcEEEeecC
Q 044748 276 LTNCSGLESI---SSSIFKLKSLKSIVISHC 303 (602)
Q Consensus 276 l~~~~~~~~~---~~~~~~l~~L~~L~l~~~ 303 (602)
+-+|+....- -..+..+|+|+.||.++.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8887655421 134567888888888763
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.31 E-value=0.00039 Score=60.24 Aligned_cols=65 Identities=28% Similarity=0.503 Sum_probs=33.4
Q ss_pred hhCCcccceEeecCcccccCcccccC-CCCCcEEEccCCcccccch--hhhcCCCCceeecccccccC
Q 044748 472 IGNSKCLTVLIVKGTAIREVPESLGQ-LSSLESLVLSNNKLERLPE--SFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 472 l~~~~~L~~L~L~~n~l~~l~~~~~~-l~~L~~L~L~~n~l~~l~~--~l~~l~~L~~L~l~~N~l~~ 536 (602)
+..++.|.+|.+++|+|+.|...+.. +++|+.|.+.+|.|..+.+ -+..+|+|++|.+-+|+++.
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhc
Confidence 34455555555555555555433322 2445555555555544332 24455556666665555544
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.92 E-value=0.00059 Score=61.82 Aligned_cols=81 Identities=28% Similarity=0.368 Sum_probs=43.5
Q ss_pred cCCCCeEEeecc--ccccCCChhhhCCcccceEeecCcccccCc--ccccCCCCCcEEEccCCcccccch----hhhcCC
Q 044748 451 VKNLTSLKIIDC--QKFKRLPNEIGNSKCLTVLIVKGTAIREVP--ESLGQLSSLESLVLSNNKLERLPE----SFNQLS 522 (602)
Q Consensus 451 ~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~L~~n~l~~l~~----~l~~l~ 522 (602)
+++|+.|.+++| .....++.-...+|+|+++++++|++..+. .....+.+|..|++.+|..+.+-. .|.-++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 345555555555 333333333344567777777777765321 124555667777777776544421 244566
Q ss_pred CCceeeccc
Q 044748 523 SLEYLQLFE 531 (602)
Q Consensus 523 ~L~~L~l~~ 531 (602)
+|++||-.+
T Consensus 144 ~L~~LD~~d 152 (260)
T KOG2739|consen 144 SLKYLDGCD 152 (260)
T ss_pred hhccccccc
Confidence 666665433
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.00014 Score=66.00 Aligned_cols=99 Identities=29% Similarity=0.335 Sum_probs=79.1
Q ss_pred ccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccch--hhhcCCCCcee
Q 044748 450 MVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPE--SFNQLSSLEYL 527 (602)
Q Consensus 450 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~--~l~~l~~L~~L 527 (602)
.+.+.+.|+..+|.+.+. . ....++.|++|.||-|+|+++. .+..|++|+.|+|..|.|.++.+ .+.++|+|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DI-s-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-S-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHH-H-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 356788888888876553 2 2357899999999999999995 47889999999999999988865 47899999999
Q ss_pred ecccccccC-Cch-----hhhcccccccccc
Q 044748 528 QLFENSLEG-IPE-----YLRSLPSKLTSLN 552 (602)
Q Consensus 528 ~l~~N~l~~-~~~-----~l~~~~~~L~~L~ 552 (602)
.|..|+-.+ .+. .+..+| +|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LP-nLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLP-NLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcc-cchhcc
Confidence 999998766 443 344565 888877
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.70 E-value=0.00031 Score=73.87 Aligned_cols=110 Identities=20% Similarity=0.327 Sum_probs=53.1
Q ss_pred CCCCcccccccCCCCcc--cccchhccccccEEeeecc-CCCccCC----cccCCCCCCcEEEcCccc-ccc--cccccc
Q 044748 197 FKSLPSIKIIHCPNIES--LPSSLCMFKSLTSLEIVDC-QNFKRLP----DELGNLKALQRLTVDRTA-IRE--VPESLG 266 (602)
Q Consensus 197 ~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~l~~n~-l~~--l~~~~~ 266 (602)
++.++.+.+..+..... +......++.|+.|++.++ ......+ .....+++|+.++++.+. ++. +.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666666644443 2234455666777776652 2211111 123344566666666654 441 111122
Q ss_pred ccccccEEeecCCCC-cc-ccccccccCCCCcEEEeecCCCc
Q 044748 267 QLAILRRLKLTNCSG-LE-SISSSIFKLKSLKSIVISHCSNF 306 (602)
Q Consensus 267 ~l~~L~~L~l~~~~~-~~-~~~~~~~~l~~L~~L~l~~~~~~ 306 (602)
.+++|+.|.+.+|.. .. .+......++.|++|++++|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 355666666555542 22 22223334555666666655443
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.64 E-value=0.00011 Score=77.39 Aligned_cols=130 Identities=25% Similarity=0.266 Sum_probs=73.1
Q ss_pred ccCCCCCcEEEcCCCcchhc--chhhhccCCCCcEEeccCC-ccccCCC----Ccc-CccccceecccCCCCCCC-Cccc
Q 044748 21 LSRAENLKILRLDDCLSLTE--THSSIQYLNKLEFLTLEMC-KSLTSLP----TGI-HSKYLKILNLWGCSNLNN-FPEI 91 (602)
Q Consensus 21 ~~~l~~L~~L~Ls~~~~~~~--~~~~~~~~~~L~~L~l~~~-~~~~~l~----~~~-~~~~L~~L~l~~~~~~~~-~~~~ 91 (602)
...+++|+.|.+.+|..... +-.....+++|+.|+++++ ......+ ... .+++|+.|+++++....+ .-..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 44467777777777754443 3345566777777777762 2222111 111 567777777777763322 1122
Q ss_pred c-cccccchhccccc-c----ccCCccccCcccCceEeccccccccc--ccccccccCCccEEEeeC
Q 044748 92 T-SCHICIFELAEVG-I----KELPSSIECLSNLRELLIMDCSELES--ISSSIFKLKSLKSIVISH 150 (602)
Q Consensus 92 ~-~~~~~L~~L~l~~-~----~~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~ 150 (602)
+ ..+++|+.|.+.. . ..+......++.|++|+++.|..... +......+++++.+.+..
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 2 2266777777544 1 12223345678899999998866531 333344577777765443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.41 E-value=0.0022 Score=58.14 Aligned_cols=61 Identities=25% Similarity=0.184 Sum_probs=26.7
Q ss_pred ccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCC--ccccCCCCcc-CccccceecccCCC
Q 044748 21 LSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMC--KSLTSLPTGI-HSKYLKILNLWGCS 83 (602)
Q Consensus 21 ~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~l~~~~-~~~~L~~L~l~~~~ 83 (602)
...+..|+.|++.++..++. ..+..+++|++|.++.| .....++..+ .+|+|+++++++|.
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 33444444444444332221 13334445555555554 2222333333 44555555555554
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.25 E-value=0.0021 Score=34.46 Aligned_cols=17 Identities=53% Similarity=0.677 Sum_probs=7.4
Q ss_pred CcEEEccCCcccccchh
Q 044748 501 LESLVLSNNKLERLPES 517 (602)
Q Consensus 501 L~~L~L~~n~l~~l~~~ 517 (602)
|++||+++|+|+.+|..
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444433
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.21 E-value=0.024 Score=47.20 Aligned_cols=57 Identities=14% Similarity=0.354 Sum_probs=19.7
Q ss_pred hhCCcccceEeecCcccccCc-ccccCCCCCcEEEccCCcccccch-hhhcCCCCceeeccc
Q 044748 472 IGNSKCLTVLIVKGTAIREVP-ESLGQLSSLESLVLSNNKLERLPE-SFNQLSSLEYLQLFE 531 (602)
Q Consensus 472 l~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~ 531 (602)
+..++.++.+.+.+ .+..++ .+|..+++|+.+++..+ ++.++. .|.++ .|+.+.+.+
T Consensus 54 F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 54 FSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred eecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 44444445555543 332222 23334455555555443 333332 24343 455544443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.00026 Score=64.32 Aligned_cols=80 Identities=20% Similarity=0.130 Sum_probs=60.5
Q ss_pred CCcEEecCCCCcCcCCccccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCcc---Cccccceecc
Q 044748 3 NLKEIDLSGSESLTKLPDLSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGI---HSKYLKILNL 79 (602)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~---~~~~L~~L~l 79 (602)
+++.|+..||. +.++.-+.+.+.|++|.||-|++.+.- .+..|++|+.|.|..| .+.++.... .+|+|+.|.|
T Consensus 20 ~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhh
Confidence 46678888886 555545888899999999998876553 5788899999999988 556665544 7888888888
Q ss_pred cCCCCCC
Q 044748 80 WGCSNLN 86 (602)
Q Consensus 80 ~~~~~~~ 86 (602)
..|+--+
T Consensus 96 ~ENPCc~ 102 (388)
T KOG2123|consen 96 DENPCCG 102 (388)
T ss_pred ccCCccc
Confidence 8876443
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.19 E-value=0.022 Score=47.42 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=41.5
Q ss_pred cccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCC-ccccccccCcEEeccCCCCCCccCccccC
Q 044748 326 LASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVP-KSLSQLAILRWLKLTNCSGLGRISSSIFK 404 (602)
Q Consensus 326 l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 404 (602)
++...+.++.+|+.+.+.. .+...-...+.++++++.+.+.++ +..++ ..+..+++++.+.+.++ ....-...|..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-LKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-T-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc-ccccccccccc
Confidence 3444555566777777764 333333445667777777777664 54443 34555666777777542 22222334555
Q ss_pred CCCCCeEEecc
Q 044748 405 LKSLKSIEISN 415 (602)
Q Consensus 405 ~~~L~~L~l~~ 415 (602)
+++++.+.+..
T Consensus 80 ~~~l~~i~~~~ 90 (129)
T PF13306_consen 80 CTNLKNIDIPS 90 (129)
T ss_dssp -TTECEEEETT
T ss_pred cccccccccCc
Confidence 66777777654
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.63 E-value=0.0059 Score=32.68 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=16.6
Q ss_pred ccceEeecCcccccCcccccC
Q 044748 477 CLTVLIVKGTAIREVPESLGQ 497 (602)
Q Consensus 477 ~L~~L~L~~n~l~~l~~~~~~ 497 (602)
+|++|++++|.++.+|..|.+
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478899999988888876554
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.52 E-value=0.0083 Score=29.69 Aligned_cols=11 Identities=64% Similarity=0.833 Sum_probs=3.0
Q ss_pred CcEEEccCCcc
Q 044748 501 LESLVLSNNKL 511 (602)
Q Consensus 501 L~~L~L~~n~l 511 (602)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333333333
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.39 E-value=0.0086 Score=29.64 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=11.3
Q ss_pred CCCceeecccccccCCc
Q 044748 522 SSLEYLQLFENSLEGIP 538 (602)
Q Consensus 522 ~~L~~L~l~~N~l~~~~ 538 (602)
++|+.|++++|+|+.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 57999999999998765
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.18 E-value=0.04 Score=30.82 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=11.5
Q ss_pred CCCceeecccccccCCchhh
Q 044748 522 SSLEYLQLFENSLEGIPEYL 541 (602)
Q Consensus 522 ~~L~~L~l~~N~l~~~~~~l 541 (602)
++|+.|++++|+|+.+|.+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45566666666665555543
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.18 E-value=0.04 Score=30.82 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=11.5
Q ss_pred CCCceeecccccccCCchhh
Q 044748 522 SSLEYLQLFENSLEGIPEYL 541 (602)
Q Consensus 522 ~~L~~L~l~~N~l~~~~~~l 541 (602)
++|+.|++++|+|+.+|.+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45566666666665555543
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.90 E-value=0.0016 Score=57.71 Aligned_cols=87 Identities=14% Similarity=0.096 Sum_probs=49.7
Q ss_pred hhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccchhhhcCCCCcee
Q 044748 448 LCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPESFNQLSSLEYL 527 (602)
Q Consensus 448 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L 527 (602)
+..+...+.|+++.|.... .-..++.++.+..|+++.|.+..+|..+.+...+..+++.+|..+..|.++...++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 3444555556655544322 222344455566666666666666666666666666666666666666666666666666
Q ss_pred eccccccc
Q 044748 528 QLFENSLE 535 (602)
Q Consensus 528 ~l~~N~l~ 535 (602)
+..+|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 66666554
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.49 E-value=0.00059 Score=69.87 Aligned_cols=186 Identities=23% Similarity=0.274 Sum_probs=103.1
Q ss_pred ccEEEEecCCCCccC----CccccCCCCccEEEecCccccc-----CCcccccc-ccCcEEeccCCCCCCc----cCccc
Q 044748 337 LKYLEIVDCQNFKRL----PDELGNLKVLKRLTIDGTAIRE-----VPKSLSQL-AILRWLKLTNCSGLGR----ISSSI 402 (602)
Q Consensus 337 L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~~l-~~L~~L~l~~~~~~~~----~~~~~ 402 (602)
+..+.+.+|.+.... ...+...+.|+.|++++|.+.. +-..+... ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 666777777654422 2334566778888888887762 11222332 5566777777766533 33445
Q ss_pred cCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccC----CChhhhCCcc-
Q 044748 403 FKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKR----LPNEIGNSKC- 477 (602)
Q Consensus 403 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~- 477 (602)
.....++.++++.|.+....-. .+. ..++..+....++++|++.+|..... +...+...+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~----------~l~----~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~ 234 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLL----------VLS----QALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESL 234 (478)
T ss_pred hcccchhHHHHHhcccchhhhH----------HHh----hhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchh
Confidence 5567777888877765411100 000 00000123456677777777765431 1122333444
Q ss_pred cceEeecCcccccC-----cccccCC-CCCcEEEccCCccc-----ccchhhhcCCCCceeecccccccC
Q 044748 478 LTVLIVKGTAIREV-----PESLGQL-SSLESLVLSNNKLE-----RLPESFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 478 L~~L~L~~n~l~~l-----~~~~~~l-~~L~~L~L~~n~l~-----~l~~~l~~l~~L~~L~l~~N~l~~ 536 (602)
+..+++.+|.+... ...+..+ ..+++++++.|.|+ .+...+..++.++++.++.|++..
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 56677777776522 2334444 56677777777763 233345566677777777777765
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.59 E-value=0.0011 Score=67.99 Aligned_cols=159 Identities=21% Similarity=0.223 Sum_probs=101.2
Q ss_pred CccEEEecCccccc-----CCccccccccCcEEeccCCCCCCc----cCccccCC-CCCCeEEeccCCCccccccCCCCC
Q 044748 360 VLKRLTIDGTAIRE-----VPKSLSQLAILRWLKLTNCSGLGR----ISSSIFKL-KSLKSIEISNCSNFKRFLKIPSCN 429 (602)
Q Consensus 360 ~L~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~ 429 (602)
.+..+.+.+|.+.. +...+...++|..|++++|.+... +-..+... ..+++|++..|........
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~----- 162 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA----- 162 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH-----
Confidence 37778888887762 334556678899999999877532 11223333 5567777777765543221
Q ss_pred CCCCcchhhhhhhccccchhccCCCCeEEeecccccc----CCChhhh----CCcccceEeecCcccccC-----ccccc
Q 044748 430 IDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFK----RLPNEIG----NSKCLTVLIVKGTAIREV-----PESLG 496 (602)
Q Consensus 430 ~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~----~~~~L~~L~L~~n~l~~l-----~~~~~ 496 (602)
.+...+.....+++++++.|.+.. .++..+. ...++++|.++++.++.. ...+.
T Consensus 163 -------------~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~ 229 (478)
T KOG4308|consen 163 -------------PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLA 229 (478)
T ss_pred -------------HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHh
Confidence 111144457788888888887643 2222333 467788999999888722 23344
Q ss_pred CCCC-CcEEEccCCccccc-----chhhhcC-CCCceeecccccccC
Q 044748 497 QLSS-LESLVLSNNKLERL-----PESFNQL-SSLEYLQLFENSLEG 536 (602)
Q Consensus 497 ~l~~-L~~L~L~~n~l~~l-----~~~l~~l-~~L~~L~l~~N~l~~ 536 (602)
..++ +..|++..|++.+. ...+..+ +.++.++++.|.|+.
T Consensus 230 ~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 230 SGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred ccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence 4555 77799999987432 2344455 677899999999887
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.24 E-value=0.13 Score=28.69 Aligned_cols=20 Identities=50% Similarity=0.697 Sum_probs=16.3
Q ss_pred CCCCcEEEccCCcccccchh
Q 044748 498 LSSLESLVLSNNKLERLPES 517 (602)
Q Consensus 498 l~~L~~L~L~~n~l~~l~~~ 517 (602)
+++|+.|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46788899999998888865
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.24 E-value=0.13 Score=28.69 Aligned_cols=20 Identities=50% Similarity=0.697 Sum_probs=16.3
Q ss_pred CCCCcEEEccCCcccccchh
Q 044748 498 LSSLESLVLSNNKLERLPES 517 (602)
Q Consensus 498 l~~L~~L~L~~n~l~~l~~~ 517 (602)
+++|+.|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46788899999998888865
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.88 E-value=0.0055 Score=54.43 Aligned_cols=85 Identities=21% Similarity=0.217 Sum_probs=75.8
Q ss_pred hhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCchhhhcccccccc
Q 044748 471 EIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTS 550 (602)
Q Consensus 471 ~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~l~~~~~~L~~ 550 (602)
.+..+...+.||++.|++..+-..|..++.+..||++.|++..+|..+.+...++.+++..|..+..|.++...| +++.
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~-~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEP-HPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccC-Ccch
Confidence 456677889999999999988878888899999999999999999999999999999999999999999999998 8998
Q ss_pred ccccee
Q 044748 551 LNLSID 556 (602)
Q Consensus 551 L~l~~~ 556 (602)
++...+
T Consensus 116 ~e~k~~ 121 (326)
T KOG0473|consen 116 NEQKKT 121 (326)
T ss_pred hhhccC
Confidence 876543
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.08 E-value=0.08 Score=46.37 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=55.3
Q ss_pred CCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCcc---CccccceecccCCCCCCC-Ccccccccccchh
Q 044748 25 ENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGI---HSKYLKILNLWGCSNLNN-FPEITSCHICIFE 100 (602)
Q Consensus 25 ~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~ 100 (602)
..++.+|.+++.+...--+.+.+++.++.|.+.+|...++..-.. -.++|+.|++++|+..++ --..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 347788999988777766788889999999999987655321111 568999999999975443 2233444555555
Q ss_pred ccccc
Q 044748 101 LAEVG 105 (602)
Q Consensus 101 L~l~~ 105 (602)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 55544
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.06 E-value=0.29 Score=27.10 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=13.8
Q ss_pred CCCceeecccccccCCch
Q 044748 522 SSLEYLQLFENSLEGIPE 539 (602)
Q Consensus 522 ~~L~~L~l~~N~l~~~~~ 539 (602)
++|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467888888888887765
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.38 E-value=0.12 Score=45.30 Aligned_cols=80 Identities=23% Similarity=0.320 Sum_probs=56.0
Q ss_pred CcEEecCCCCcCcC-CccccCCCCCcEEEcCCCcchhcc-hhhhc-cCCCCcEEeccCCccccCCCC-cc-Cccccceec
Q 044748 4 LKEIDLSGSESLTK-LPDLSRAENLKILRLDDCLSLTET-HSSIQ-YLNKLEFLTLEMCKSLTSLPT-GI-HSKYLKILN 78 (602)
Q Consensus 4 L~~L~l~~~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~l~~-~~-~~~~L~~L~ 78 (602)
++.+|-+++.+... +.++.+++.++.|.+.+|+..+.- -+.++ -.++|+.|++++|+.+++-.- .+ .+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 46788888874432 223888899999999999865421 12333 368999999999987774332 22 889999999
Q ss_pred ccCCC
Q 044748 79 LWGCS 83 (602)
Q Consensus 79 l~~~~ 83 (602)
+.+-.
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 87743
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.23 E-value=0.42 Score=25.99 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=9.5
Q ss_pred CCCcEEEcCCCcchhcch
Q 044748 25 ENLKILRLDDCLSLTETH 42 (602)
Q Consensus 25 ~~L~~L~Ls~~~~~~~~~ 42 (602)
++|++|+|++|.+.....
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 566667777666554433
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.86 E-value=1.4 Score=24.64 Aligned_cols=15 Identities=47% Similarity=0.738 Sum_probs=7.3
Q ss_pred CCcEEEccCCccccc
Q 044748 500 SLESLVLSNNKLERL 514 (602)
Q Consensus 500 ~L~~L~L~~n~l~~l 514 (602)
+|+.|++++|+|+.+
T Consensus 3 ~L~~L~L~~NkI~~I 17 (26)
T smart00365 3 NLEELDLSQNKIKKI 17 (26)
T ss_pred ccCEEECCCCcccee
Confidence 445555555554433
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.56 E-value=1.3 Score=25.27 Aligned_cols=15 Identities=40% Similarity=0.412 Sum_probs=8.5
Q ss_pred CCCceeecccccccC
Q 044748 522 SSLEYLQLFENSLEG 536 (602)
Q Consensus 522 ~~L~~L~l~~N~l~~ 536 (602)
++|++|||++|.|..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 345666666666644
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.16 E-value=15 Score=37.06 Aligned_cols=34 Identities=15% Similarity=-0.101 Sum_probs=18.7
Q ss_pred CCCCeEEeeccccccCCChh--hhCCcccceEeecC
Q 044748 452 KNLTSLKIIDCQKFKRLPNE--IGNSKCLTVLIVKG 485 (602)
Q Consensus 452 ~~L~~L~l~~~~~~~~~~~~--l~~~~~L~~L~L~~ 485 (602)
..+++|.+.+|...++.... ....++.+.+++..
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccc
Confidence 34778888887766644332 22334455555544
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=62.43 E-value=5 Score=22.19 Aligned_cols=13 Identities=38% Similarity=0.675 Sum_probs=7.0
Q ss_pred CCCCcEEEcCCCc
Q 044748 24 AENLKILRLDDCL 36 (602)
Q Consensus 24 l~~L~~L~Ls~~~ 36 (602)
|++|+.|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3455555555554
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.53 E-value=6.7 Score=40.31 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=7.1
Q ss_pred CCcccEEEEecCCC
Q 044748 334 FKSLKYLEIVDCQN 347 (602)
Q Consensus 334 ~~~L~~L~l~~~~~ 347 (602)
.+.+..+.+++|++
T Consensus 217 ~p~i~sl~lsnNrL 230 (585)
T KOG3763|consen 217 FPEILSLSLSNNRL 230 (585)
T ss_pred Ccceeeeecccchh
Confidence 44555555555543
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.69 E-value=8.3 Score=39.69 Aligned_cols=62 Identities=23% Similarity=0.096 Sum_probs=29.2
Q ss_pred CcccceEeecCcccccCc---ccccCCCCCcEEEccCC--cccccchh-hhcCCCCceeecccccccC
Q 044748 475 SKCLTVLIVKGTAIREVP---ESLGQLSSLESLVLSNN--KLERLPES-FNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 475 ~~~L~~L~L~~n~l~~l~---~~~~~l~~L~~L~L~~n--~l~~l~~~-l~~l~~L~~L~l~~N~l~~ 536 (602)
.+.+..+.|++|++..+. .--...+.|+.|+|++| .+..-++. -.....|++|-+.||++..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 344555556666554332 11122356666666666 33322211 0122346666666666654
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=51.54 E-value=9.3 Score=47.37 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=21.3
Q ss_pred eecCcccccCcc-cccCCCCCcEEEccCCcc
Q 044748 482 IVKGTAIREVPE-SLGQLSSLESLVLSNNKL 511 (602)
Q Consensus 482 ~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~l 511 (602)
||++|+|+.+|. .|..+++|+.|+|++|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 467777777763 456677777788777765
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.87 E-value=22 Score=44.34 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=29.3
Q ss_pred EccCCcccccchh-hhcCCCCceeecccccccC
Q 044748 505 VLSNNKLERLPES-FNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 505 ~L~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~ 536 (602)
||++|+|+.+|.. |..+++|++|+|++|++.|
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 6899999999875 8889999999999999987
Done!