Query 044748
Match_columns 602
No_of_seqs 273 out of 3550
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 10:55:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.5E-56 8.5E-61 491.4 31.8 536 2-576 77-719 (768)
2 3rgz_A Protein brassinosteroid 100.0 5E-55 1.7E-59 481.1 36.2 501 1-556 99-714 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4.6E-50 1.6E-54 438.0 39.3 528 2-561 25-624 (680)
4 3t6q_A CD180 antigen; protein- 100.0 2.3E-49 7.9E-54 426.8 37.6 505 2-560 33-561 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 9.9E-50 3.4E-54 429.6 33.7 479 25-560 32-559 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 5.3E-48 1.8E-52 421.7 40.4 493 1-536 48-623 (680)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-47 8.3E-52 411.0 33.5 480 2-536 32-559 (606)
8 3t6q_A CD180 antigen; protein- 100.0 2.2E-46 7.4E-51 403.6 33.2 513 5-575 15-561 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 6.3E-45 2.2E-49 404.8 37.1 499 2-560 24-561 (844)
10 2z63_A TOLL-like receptor 4, v 100.0 3.2E-44 1.1E-48 384.2 31.6 480 2-536 28-532 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 2.8E-43 9.4E-48 391.6 35.6 510 5-575 7-561 (844)
12 4eco_A Uncharacterized protein 100.0 3.5E-43 1.2E-47 378.0 26.9 449 25-536 81-601 (636)
13 2z63_A TOLL-like receptor 4, v 100.0 2.6E-42 9E-47 369.3 31.8 494 5-560 10-532 (570)
14 4eco_A Uncharacterized protein 100.0 2.5E-44 8.7E-49 386.8 15.6 449 3-515 82-603 (636)
15 2z81_A CD282 antigen, TOLL-lik 100.0 5.1E-42 1.7E-46 365.1 29.5 243 4-259 7-264 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-41 5.4E-46 358.6 27.2 452 5-536 3-482 (520)
17 2z81_A CD282 antigen, TOLL-lik 100.0 8.9E-41 3E-45 355.5 31.0 480 24-560 4-511 (549)
18 4ecn_A Leucine-rich repeat pro 100.0 4.5E-41 1.5E-45 366.8 23.7 438 25-536 323-841 (876)
19 2z7x_B TOLL-like receptor 1, v 100.0 3.8E-40 1.3E-44 348.0 26.4 448 28-560 3-482 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 7.1E-40 2.4E-44 357.4 28.0 439 49-558 323-839 (876)
21 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-38 3.7E-43 346.1 32.2 502 3-560 53-581 (635)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.6E-38 1.6E-42 334.7 27.4 449 26-536 32-511 (562)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.5E-37 2.2E-41 325.8 26.3 450 48-560 30-511 (562)
24 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-34 4.3E-39 314.1 34.9 499 15-574 43-580 (635)
25 1jl5_A Outer protein YOPM; leu 100.0 1.4E-34 4.9E-39 297.3 27.2 401 48-557 10-427 (454)
26 1jl5_A Outer protein YOPM; leu 100.0 7.7E-35 2.6E-39 299.3 19.8 408 2-541 11-436 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 5.4E-34 1.9E-38 295.8 25.2 365 106-538 22-412 (455)
28 3v47_A TOLL-like receptor 5B a 100.0 2.1E-33 7.1E-38 291.4 22.8 345 172-560 30-409 (455)
29 1o6v_A Internalin A; bacterial 100.0 3.1E-31 1.1E-35 275.2 31.1 350 116-541 45-394 (466)
30 1o6v_A Internalin A; bacterial 100.0 2.7E-31 9.2E-36 275.6 29.1 340 2-419 46-388 (466)
31 2id5_A Lingo-1, leucine rich r 100.0 2.6E-31 9E-36 277.1 26.1 310 185-536 21-334 (477)
32 3bz5_A Internalin-J, INLJ; leu 100.0 2.9E-31 9.8E-36 273.0 24.9 341 113-548 60-401 (457)
33 3o6n_A APL1; leucine-rich repe 100.0 1.7E-31 5.6E-36 270.9 22.2 285 197-536 68-353 (390)
34 3bz5_A Internalin-J, INLJ; leu 100.0 4.5E-31 1.6E-35 271.5 23.9 343 112-580 37-393 (457)
35 2id5_A Lingo-1, leucine rich r 100.0 1.7E-30 5.8E-35 271.0 26.4 317 202-561 15-335 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 2.1E-30 7.2E-35 262.8 23.0 313 197-564 44-357 (390)
37 4fmz_A Internalin; leucine ric 100.0 1.5E-29 5.1E-34 252.5 26.4 100 451-555 242-342 (347)
38 3oja_B Anopheles plasmodium-re 100.0 2.9E-30 1E-34 276.0 21.9 286 196-536 73-359 (597)
39 4fmz_A Internalin; leucine ric 100.0 3.4E-29 1.2E-33 249.9 27.8 308 167-536 39-347 (347)
40 3oja_B Anopheles plasmodium-re 100.0 1.6E-29 5.6E-34 270.2 22.8 312 197-563 50-362 (597)
41 1xku_A Decorin; proteoglycan, 100.0 4.2E-27 1.4E-31 232.7 26.5 266 173-535 32-306 (330)
42 1ogq_A PGIP-2, polygalacturona 100.0 4.4E-28 1.5E-32 237.2 18.6 249 270-560 51-305 (313)
43 1xku_A Decorin; proteoglycan, 100.0 8.8E-27 3E-31 230.4 25.1 264 223-558 32-305 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 7.1E-27 2.4E-31 231.2 24.5 243 223-535 55-307 (332)
45 2ft3_A Biglycan; proteoglycan, 100.0 7.2E-27 2.4E-31 231.2 24.1 261 223-557 34-305 (332)
46 1z7x_W Ribonuclease inhibitor; 100.0 6.2E-30 2.1E-34 265.8 0.3 356 117-536 3-412 (461)
47 1z7x_W Ribonuclease inhibitor; 99.9 4.9E-30 1.7E-34 266.6 -2.9 376 95-536 2-441 (461)
48 3ogk_B Coronatine-insensitive 99.9 4.9E-29 1.7E-33 267.6 3.4 367 119-532 140-548 (592)
49 3ogk_B Coronatine-insensitive 99.9 1.8E-28 6.1E-33 263.2 4.7 401 1-421 72-528 (592)
50 1ogq_A PGIP-2, polygalacturona 99.9 2.5E-27 8.6E-32 231.8 11.9 246 25-282 50-304 (313)
51 4fcg_A Uncharacterized protein 99.9 7.1E-25 2.4E-29 215.6 21.8 183 222-424 81-271 (328)
52 2z80_A TOLL-like receptor 2, v 99.9 1.5E-25 5.2E-30 223.6 16.2 272 185-537 41-316 (353)
53 2z80_A TOLL-like receptor 2, v 99.9 2.9E-25 9.9E-30 221.6 16.8 270 248-560 33-315 (353)
54 4fcg_A Uncharacterized protein 99.9 1.4E-24 4.9E-29 213.5 20.4 226 245-537 80-316 (328)
55 2p1m_B Transport inhibitor res 99.9 3.3E-27 1.1E-31 253.6 -0.8 327 114-488 181-543 (594)
56 2z66_A Variable lymphocyte rec 99.9 1.6E-24 5.6E-29 211.8 17.7 180 334-536 77-262 (306)
57 2z66_A Variable lymphocyte rec 99.9 8.6E-25 2.9E-29 213.7 15.1 247 249-561 10-263 (306)
58 3g06_A SSPH2 (leucine-rich rep 99.9 2.8E-23 9.7E-28 219.6 25.0 267 199-545 41-308 (622)
59 2p1m_B Transport inhibitor res 99.9 1.6E-26 5.6E-31 248.1 0.3 373 116-533 129-542 (594)
60 3g06_A SSPH2 (leucine-rich rep 99.9 7.2E-23 2.5E-27 216.5 27.9 257 222-558 40-296 (622)
61 3zyj_A Leucine-rich repeat-con 99.9 1.4E-23 4.9E-28 215.8 21.1 245 248-536 45-293 (440)
62 3zyi_A Leucine-rich repeat-con 99.9 1.4E-23 4.8E-28 216.7 21.0 244 249-536 57-304 (452)
63 1wwl_A Monocyte differentiatio 99.9 1.8E-25 6.2E-30 218.7 6.4 178 334-536 120-310 (312)
64 3o53_A Protein LRIM1, AGAP0063 99.9 7.1E-25 2.4E-29 215.0 10.2 255 224-554 12-270 (317)
65 1ozn_A Reticulon 4 receptor; N 99.9 2.8E-23 9.7E-28 200.6 18.8 157 334-536 79-239 (285)
66 1wwl_A Monocyte differentiatio 99.9 6.6E-25 2.2E-29 214.8 6.7 202 334-557 94-307 (312)
67 3oja_A Leucine-rich immune mol 99.9 6.4E-24 2.2E-28 220.3 12.9 234 245-554 33-270 (487)
68 3o53_A Protein LRIM1, AGAP0063 99.9 3E-24 1E-28 210.6 8.8 262 199-536 11-277 (317)
69 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-22 5.9E-27 195.1 20.8 204 334-560 31-239 (285)
70 3zyi_A Leucine-rich repeat-con 99.9 3.7E-22 1.3E-26 206.1 21.5 236 187-465 66-303 (452)
71 3zyj_A Leucine-rich repeat-con 99.9 4.5E-22 1.5E-26 204.7 21.7 117 185-303 53-170 (440)
72 3oja_A Leucine-rich immune mol 99.9 2E-22 7E-27 209.0 12.4 235 221-530 33-270 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 3.8E-21 1.3E-25 184.8 18.1 157 334-536 75-238 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 1.4E-21 4.8E-26 187.7 14.4 211 334-566 27-246 (276)
75 2o6q_A Variable lymphocyte rec 99.9 8.7E-21 3E-25 181.4 18.7 201 335-561 16-220 (270)
76 1p9a_G Platelet glycoprotein I 99.9 7.1E-21 2.4E-25 183.4 17.6 203 289-536 6-209 (290)
77 1p9a_G Platelet glycoprotein I 99.9 6.9E-21 2.4E-25 183.6 17.2 201 332-561 7-210 (290)
78 2o6q_A Variable lymphocyte rec 99.8 4.1E-20 1.4E-24 176.7 19.7 201 293-536 16-219 (270)
79 2ca6_A RAN GTPase-activating p 99.8 6E-22 2.1E-26 200.2 4.6 267 252-550 15-334 (386)
80 3rfs_A Internalin B, repeat mo 99.8 6.7E-20 2.3E-24 175.3 16.1 203 334-583 40-244 (272)
81 2xwt_C Thyrotropin receptor; s 99.8 5.1E-20 1.7E-24 172.7 14.1 195 334-555 30-235 (239)
82 4glp_A Monocyte differentiatio 99.8 6.5E-20 2.2E-24 179.1 14.2 85 449-536 221-308 (310)
83 4glp_A Monocyte differentiatio 99.8 3.3E-20 1.1E-24 181.2 12.1 199 334-557 90-305 (310)
84 1h6u_A Internalin H; cell adhe 99.8 2.2E-19 7.4E-24 174.9 16.8 201 289-542 37-237 (308)
85 2xwt_C Thyrotropin receptor; s 99.8 2E-19 6.7E-24 168.7 15.8 55 476-532 179-236 (239)
86 1h6u_A Internalin H; cell adhe 99.8 3E-19 1E-23 173.9 17.5 192 334-560 40-231 (308)
87 3m19_A Variable lymphocyte rec 99.8 3.8E-19 1.3E-23 167.9 15.8 178 335-537 14-194 (251)
88 3rfs_A Internalin B, repeat mo 99.8 1.9E-19 6.6E-24 172.1 12.5 178 218-416 37-215 (272)
89 3goz_A Leucine-rich repeat-con 99.8 2.4E-20 8.2E-25 186.4 4.5 60 359-418 138-208 (362)
90 2ast_B S-phase kinase-associat 99.8 3.8E-20 1.3E-24 183.4 6.0 181 334-540 117-312 (336)
91 3m19_A Variable lymphocyte rec 99.8 2E-18 6.9E-23 163.0 17.4 178 359-561 14-194 (251)
92 2ast_B S-phase kinase-associat 99.8 7E-20 2.4E-24 181.5 7.6 198 200-417 49-258 (336)
93 3goz_A Leucine-rich repeat-con 99.8 1E-19 3.4E-24 181.9 5.7 256 250-536 2-298 (362)
94 2ca6_A RAN GTPase-activating p 99.8 3.4E-20 1.2E-24 187.3 1.8 252 189-491 23-318 (386)
95 4ay9_X Follicle-stimulating ho 99.8 2.3E-17 8E-22 163.8 18.9 239 225-532 12-256 (350)
96 1h6t_A Internalin B; cell adhe 99.7 1.9E-17 6.4E-22 159.7 15.7 173 334-539 45-217 (291)
97 3cvr_A Invasion plasmid antige 99.7 1.5E-17 5E-22 173.7 15.8 188 293-545 59-254 (571)
98 4ezg_A Putative uncharacterize 99.7 1.5E-17 5.2E-22 150.5 12.9 154 356-536 41-195 (197)
99 3cvr_A Invasion plasmid antige 99.7 2.8E-17 9.4E-22 171.6 16.1 177 335-558 59-242 (571)
100 1h6t_A Internalin B; cell adhe 99.7 4.9E-17 1.7E-21 156.8 15.2 172 355-559 42-213 (291)
101 3e6j_A Variable lymphocyte rec 99.7 7.3E-17 2.5E-21 149.7 14.9 152 361-536 21-173 (229)
102 2xot_A Amphoterin-induced prot 99.7 5.2E-17 1.8E-21 161.9 13.8 174 338-536 21-203 (361)
103 2o6s_A Variable lymphocyte rec 99.7 9.6E-17 3.3E-21 146.8 14.5 178 338-546 10-190 (208)
104 2v9t_B SLIT homolog 2 protein 99.7 1.7E-16 5.7E-21 146.2 14.2 151 362-536 14-166 (220)
105 2v70_A SLIT-2, SLIT homolog 2 99.7 1.8E-16 6.1E-21 146.0 14.3 151 362-536 14-167 (220)
106 4ay9_X Follicle-stimulating ho 99.7 4.9E-16 1.7E-20 154.2 18.2 231 106-368 21-255 (350)
107 2o6s_A Variable lymphocyte rec 99.7 3.8E-16 1.3E-20 142.8 16.0 151 362-536 10-162 (208)
108 4ezg_A Putative uncharacterize 99.7 1.5E-16 5.3E-21 143.9 13.0 153 334-513 43-195 (197)
109 2xot_A Amphoterin-induced prot 99.7 2.6E-16 9E-21 156.8 13.8 176 362-561 21-204 (361)
110 1m9s_A Internalin B; cell inva 99.7 3.5E-16 1.2E-20 165.3 15.5 173 334-539 42-214 (605)
111 1xeu_A Internalin C; cellular 99.7 1.1E-16 3.7E-21 151.7 9.0 173 334-540 18-190 (263)
112 3e6j_A Variable lymphocyte rec 99.7 6.4E-16 2.2E-20 143.3 13.9 153 383-561 20-174 (229)
113 2ell_A Acidic leucine-rich nuc 99.6 1E-15 3.6E-20 134.6 12.2 135 382-540 24-165 (168)
114 1dce_A Protein (RAB geranylger 99.6 3.1E-18 1.1E-22 179.9 -5.2 202 243-539 346-550 (567)
115 2v9t_B SLIT homolog 2 protein 99.6 1.3E-15 4.5E-20 140.1 12.9 150 385-560 14-166 (220)
116 1m9s_A Internalin B; cell inva 99.6 1.5E-15 5.1E-20 160.5 15.0 188 336-558 22-209 (605)
117 1xeu_A Internalin C; cellular 99.6 5.1E-16 1.7E-20 147.1 9.7 171 357-561 17-187 (263)
118 2v70_A SLIT-2, SLIT homolog 2 99.6 6.9E-15 2.3E-19 135.3 13.9 150 338-512 14-166 (220)
119 1dce_A Protein (RAB geranylger 99.6 4.5E-17 1.5E-21 171.0 -2.3 183 356-557 346-544 (567)
120 3sb4_A Hypothetical leucine ri 99.6 4E-15 1.4E-19 146.3 9.9 201 325-552 114-327 (329)
121 2ell_A Acidic leucine-rich nuc 99.6 1.6E-14 5.6E-19 126.9 11.7 135 359-517 24-165 (168)
122 2je0_A Acidic leucine-rich nuc 99.6 1.1E-14 3.7E-19 125.2 10.4 126 381-530 16-148 (149)
123 2je0_A Acidic leucine-rich nuc 99.5 1E-14 3.5E-19 125.4 8.3 126 404-554 15-148 (149)
124 4b8c_D Glucose-repressible alc 99.5 6.6E-15 2.3E-19 159.6 7.3 190 334-556 172-369 (727)
125 1w8a_A SLIT protein; signaling 99.5 5.3E-14 1.8E-18 126.4 10.2 83 454-536 56-140 (192)
126 4b8c_D Glucose-repressible alc 99.5 8.5E-15 2.9E-19 158.8 5.8 113 352-489 217-329 (727)
127 1a9n_A U2A', U2A'; complex (nu 99.5 6.3E-14 2.2E-18 124.1 9.3 134 378-536 15-154 (176)
128 1a9n_A U2A', U2A'; complex (nu 99.5 9.4E-14 3.2E-18 123.0 10.0 129 401-555 14-149 (176)
129 1w8a_A SLIT protein; signaling 99.5 2.4E-13 8.3E-18 122.0 12.5 127 362-512 11-139 (192)
130 3sb4_A Hypothetical leucine ri 99.5 1.5E-13 5.3E-18 135.0 10.8 258 1-276 48-328 (329)
131 4fs7_A Uncharacterized protein 99.4 4E-12 1.4E-16 128.2 20.2 322 44-411 66-393 (394)
132 4fs7_A Uncharacterized protein 99.4 1.1E-11 3.7E-16 125.0 23.2 144 355-527 249-393 (394)
133 2wfh_A SLIT homolog 2 protein 99.4 9E-13 3.1E-17 118.2 12.7 126 362-536 13-140 (193)
134 4fdw_A Leucine rich hypothetic 99.4 1.1E-11 3.7E-16 124.4 20.6 105 447-554 266-378 (401)
135 2wfh_A SLIT homolog 2 protein 99.4 1.3E-12 4.5E-17 117.2 12.5 126 338-512 13-139 (193)
136 4fdw_A Leucine rich hypothetic 99.4 1E-11 3.4E-16 124.6 19.8 264 221-536 112-384 (401)
137 2o6r_A Variable lymphocyte rec 99.4 1.8E-12 6.1E-17 114.9 12.6 90 450-539 50-141 (177)
138 1ds9_A Outer arm dynein; leuci 99.4 7E-15 2.4E-19 133.1 -3.1 86 449-536 67-154 (198)
139 2o6r_A Variable lymphocyte rec 99.4 3.1E-12 1.1E-16 113.3 12.4 130 361-514 9-139 (177)
140 1ds9_A Outer arm dynein; leuci 99.4 4.1E-14 1.4E-18 128.0 -1.2 135 373-536 39-186 (198)
141 2r9u_A Variable lymphocyte rec 99.3 2.1E-11 7.2E-16 107.2 10.6 92 452-543 33-126 (174)
142 4gt6_A Cell surface protein; l 99.3 1.9E-09 6.6E-14 108.5 25.9 132 166-301 81-213 (394)
143 3g39_A Variable lymphocyte rec 99.2 3.5E-11 1.2E-15 105.4 10.4 90 452-541 30-121 (170)
144 4gt6_A Cell surface protein; l 99.2 9.5E-09 3.3E-13 103.4 26.3 154 112-279 58-215 (394)
145 3un9_A NLR family member X1; l 99.1 4.9E-12 1.7E-16 125.6 -0.8 161 334-512 71-252 (372)
146 3g39_A Variable lymphocyte rec 99.1 4.3E-10 1.5E-14 98.4 10.9 106 361-514 11-117 (170)
147 2r9u_A Variable lymphocyte rec 99.1 4.6E-10 1.6E-14 98.5 10.9 107 362-516 15-122 (174)
148 3un9_A NLR family member X1; l 99.0 2.8E-11 9.5E-16 120.2 -0.7 161 358-536 71-253 (372)
149 4h09_A Hypothetical leucine ri 99.0 6.6E-08 2.2E-12 96.8 23.9 130 377-532 212-343 (379)
150 2ifg_A High affinity nerve gro 98.9 1.2E-09 4.2E-14 108.0 8.4 88 448-536 27-117 (347)
151 4h09_A Hypothetical leucine ri 98.9 3.9E-07 1.3E-11 91.1 23.2 284 218-554 42-341 (379)
152 2ra8_A Uncharacterized protein 98.8 3.6E-09 1.2E-13 104.0 7.7 158 356-536 136-321 (362)
153 2ifg_A High affinity nerve gro 98.8 7.2E-09 2.4E-13 102.5 9.7 103 363-512 12-116 (347)
154 2ra8_A Uncharacterized protein 98.7 8.1E-09 2.8E-13 101.5 6.4 182 334-533 138-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 9.1E-08 3.1E-12 84.7 3.8 90 447-536 60-165 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 8.3E-08 2.8E-12 85.0 2.2 90 447-536 31-137 (185)
157 3rw6_A Nuclear RNA export fact 98.1 1.5E-06 5.1E-11 80.7 4.9 65 473-538 167-237 (267)
158 3rw6_A Nuclear RNA export fact 98.0 7.7E-06 2.6E-10 75.9 5.9 80 449-529 167-258 (267)
159 3e4g_A ATP synthase subunit S, 97.9 9.7E-06 3.3E-10 69.6 5.6 86 222-307 61-153 (176)
160 3e4g_A ATP synthase subunit S, 97.8 1.7E-05 5.7E-10 68.2 4.7 38 270-307 62-99 (176)
161 3rfe_A Platelet glycoprotein I 97.6 0.00011 3.7E-09 60.2 6.0 56 479-536 11-69 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00023 7.9E-09 62.3 4.4 85 449-533 67-168 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00013 4.4E-09 63.9 2.3 109 447-556 36-167 (197)
164 3rfe_A Platelet glycoprotein I 97.2 0.00032 1.1E-08 57.3 4.3 57 502-560 11-69 (130)
165 2lz0_A Uncharacterized protein 44.3 16 0.00056 27.4 3.1 38 21-59 16-53 (100)
166 2lz0_A Uncharacterized protein 36.6 42 0.0014 25.1 4.2 43 325-368 10-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.5e-56 Score=491.42 Aligned_cols=536 Identities=20% Similarity=0.177 Sum_probs=325.4
Q ss_pred CCCcEEecCCCCcCcCCcc-ccCCCCCcEEEcCCCcchhcchh--hhccCCCCcEEeccCCccccCCCCcc--Cccccce
Q 044748 2 VNLKEIDLSGSESLTKLPD-LSRAENLKILRLDDCLSLTETHS--SIQYLNKLEFLTLEMCKSLTSLPTGI--HSKYLKI 76 (602)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~l~~~~--~~~~L~~ 76 (602)
++|+.++++.+.+ ..++. +..+++|++|+|++|.+.+.+|. .++.+++|++|++++|......|..+ .+++|++
T Consensus 77 ~~L~~l~~~~~~~-~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 155 (768)
T 3rgz_A 77 TGLESLFLSNSHI-NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155 (768)
T ss_dssp TTCCEEECTTSCE-EECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred CcccccCCcCCCc-CCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence 5667777777753 23445 88889999999999888887887 88888999999999886666666655 7888888
Q ss_pred ecccCCCCCCCCccc---ccccccchhccccc--cccCCccccCcccCceEecccccccccccccccccCCccEEEeeCC
Q 044748 77 LNLWGCSNLNNFPEI---TSCHICIFELAEVG--IKELPSSIECLSNLRELLIMDCSELESISSSIFKLKSLKSIVISHC 151 (602)
Q Consensus 77 L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~--~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 151 (602)
|++++|.+.+..+.. +.++++|++|++++ +.... .+..+++|++|++++|.+.+.+|. +..+++|++|++++|
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC-BCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccC-CcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC
Confidence 888888877666665 66777777777777 22221 136677777777777766655555 677777777777777
Q ss_pred CCccccccCCCCCCCCCcCcccceeeecccCCCCCCccccccccCCCCCcccccccCCCCcccccchhcc-ccccEEeee
Q 044748 152 SNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCPNIESLPSSLCMF-KSLTSLEIV 230 (602)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~ 230 (602)
.+....| ..+..+++|++|+++++ .....+|.. .+++|++|++++|.+.+.+|..+... ++|++|+++
T Consensus 234 ~l~~~~~-------~~l~~l~~L~~L~Ls~n--~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 234 KLSGDFS-------RAISTCTELKLLNISSN--QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302 (768)
T ss_dssp CCCSCHH-------HHTTTCSSCCEEECCSS--CCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC
T ss_pred cCCCccc-------HHHhcCCCCCEEECCCC--cccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECc
Confidence 7666666 56667777777777762 222233332 55666666666666655666555443 666666666
Q ss_pred ccCCCccCCcccCCCCCCcEEEcCccccc-ccccc-ccccccccEEeecCCCCccccccccccCC-CCcEEEeecCCCcc
Q 044748 231 DCQNFKRLPDELGNLKALQRLTVDRTAIR-EVPES-LGQLAILRRLKLTNCSGLESISSSIFKLK-SLKSIVISHCSNFK 307 (602)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~ 307 (602)
+|.+.+.+|..+..+++|+.|++++|.++ .+|.. +..+++|+.|++++|.+.+.+|..+..++ +|++|++++|....
T Consensus 303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~ 382 (768)
T 3rgz_A 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382 (768)
T ss_dssp SSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE
T ss_pred CCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC
Confidence 66666666666666666666666666665 55544 55666666666666655555555555554 66666666542111
Q ss_pred cccc---------CCCCCCCCCcchh-ccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccc-cCCc
Q 044748 308 RFLE---------IPSGNTDGSTRIE-RLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIR-EVPK 376 (602)
Q Consensus 308 ~~~~---------~~~~~~~~~~~~~-~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~l~~ 376 (602)
.... +..... ..+.+. .+|..+ ..+++|++|++++|.+.+..|..+..+++|++|++++|.++ .+|.
T Consensus 383 ~~~~~~~~~~~~~L~~L~L-~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 460 (768)
T 3rgz_A 383 PILPNLCQNPKNTLQELYL-QNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460 (768)
T ss_dssp ECCTTTTCSTTCCCCEEEC-CSSEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred CcChhhhhcccCCccEEEC-CCCccccccCHHH-hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH
Confidence 0000 000000 111122 222222 23666666666666666666666666666666666666666 5555
Q ss_pred cccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCe
Q 044748 377 SLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTS 456 (602)
Q Consensus 377 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~ 456 (602)
.+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|. .+..+++|+.
T Consensus 461 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~----------------------~~~~l~~L~~ 518 (768)
T 3rgz_A 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK----------------------WIGRLENLAI 518 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG----------------------GGGGCTTCCE
T ss_pred HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh----------------------HHhcCCCCCE
Confidence 666666666666666666666666666666666666666666655554 4455555555
Q ss_pred EEeeccccccCCChhhhCCcccceEeecCcccc-cCccc-----------------------------------------
Q 044748 457 LKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIR-EVPES----------------------------------------- 494 (602)
Q Consensus 457 L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~-~l~~~----------------------------------------- 494 (602)
|++++|.+.+.+|..+..+++|++|++++|.++ .+|..
T Consensus 519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (768)
T 3rgz_A 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598 (768)
T ss_dssp EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence 555555555555555555555555555555553 33322
Q ss_pred -----------------------------ccCCCCCcEEEccCCcc-cccchhhhcCCCCceeecccccccC-Cchhhhc
Q 044748 495 -----------------------------LGQLSSLESLVLSNNKL-ERLPESFNQLSSLEYLQLFENSLEG-IPEYLRS 543 (602)
Q Consensus 495 -----------------------------~~~l~~L~~L~L~~n~l-~~l~~~l~~l~~L~~L~l~~N~l~~-~~~~l~~ 543 (602)
+..+++|+.||+++|++ +.+|..+..+++|+.|++++|++++ +|+.+..
T Consensus 599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 678 (768)
T 3rgz_A 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678 (768)
T ss_dssp CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC
Confidence 22234555666666665 3555556666666666666666654 5555555
Q ss_pred cccccccccccee---------eccccccccccchhhhhhcc
Q 044748 544 LPSKLTSLNLSID---------LRYCLKLDSNELSEIVKGGW 576 (602)
Q Consensus 544 ~~~~L~~L~l~~~---------~~~~~~L~~~~l~~~~~~~~ 576 (602)
++ +|+.||++.| +..++.|+.+++++|.+.+-
T Consensus 679 L~-~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 679 LR-GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp CT-TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred CC-CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 55 5666665533 22344555555555555443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5e-55 Score=481.06 Aligned_cols=501 Identities=23% Similarity=0.236 Sum_probs=263.3
Q ss_pred CCCCcEEecCCCCcCcCCcc---ccCCCCCcEEEcCCCcchhcchhhh-ccCCCCcEEeccCCccccCCCCc---c-Ccc
Q 044748 1 LVNLKEIDLSGSESLTKLPD---LSRAENLKILRLDDCLSLTETHSSI-QYLNKLEFLTLEMCKSLTSLPTG---I-HSK 72 (602)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~Ls~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~---~-~~~ 72 (602)
+++|++|+|++|.+.+.+|. +.++++|++|++++|.+.+.+|..+ ..+++|++|++++|...+..|.. + .++
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 35666777777765544432 6666666666666666555555443 55666666666666433333332 2 455
Q ss_pred ccceecccCCCCCCCCcccccccccchhccccc--cc-cCCccccCcccCceEecccccccccccccccccCCccEEEee
Q 044748 73 YLKILNLWGCSNLNNFPEITSCHICIFELAEVG--IK-ELPSSIECLSNLRELLIMDCSELESISSSIFKLKSLKSIVIS 149 (602)
Q Consensus 73 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~--~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 149 (602)
+|++|++++|.+.+..+. ..+++|++|++++ +. .+|. ++.+++|++|++++|.+.+.+|..+..+++|++|+++
T Consensus 179 ~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp TCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred CCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence 555555555544433332 4455555555554 22 2222 5555555555555554444444455555555555555
Q ss_pred CCCCccccccCCCCCCCCCcCcccceeeecccCCCCCCccccccccCC-CCCcccccccCCCCcccccchhccccccEEe
Q 044748 150 HCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPINMFSF-KSLPSIKIIHCPNIESLPSSLCMFKSLTSLE 228 (602)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 228 (602)
+|.+....| .. .+++|++|++++ +.....+|..+... ++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 256 ~n~l~~~~~-------~~--~l~~L~~L~L~~--n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 324 (768)
T 3rgz_A 256 SNQFVGPIP-------PL--PLKSLQYLSLAE--NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324 (768)
T ss_dssp SSCCEESCC-------CC--CCTTCCEEECCS--SEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEE
T ss_pred CCcccCccC-------cc--ccCCCCEEECcC--CccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEE
Confidence 554443332 11 344444444444 11112333333332 4444444444444444444444444444444
Q ss_pred eeccCCCccCCcc-cCCCCCCcEEEcCccccc-ccccccccc---------------------------ccccEEeecCC
Q 044748 229 IVDCQNFKRLPDE-LGNLKALQRLTVDRTAIR-EVPESLGQL---------------------------AILRRLKLTNC 279 (602)
Q Consensus 229 l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~-~l~~~~~~l---------------------------~~L~~L~l~~~ 279 (602)
+++|.+.+.+|.. +..+++|+.|++++|+++ .+|..+..+ ++|+.|++++|
T Consensus 325 L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n 404 (768)
T 3rgz_A 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404 (768)
T ss_dssp CCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS
T ss_pred CCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC
Confidence 4444444333332 444444444444444443 333333333 33334444433
Q ss_pred CCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCC
Q 044748 280 SGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLK 359 (602)
Q Consensus 280 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 359 (602)
.+.+.+|..+..+++|++|++++|. ++ +.+|..+ ..+++|++|++++|.+.+.+|..+..++
T Consensus 405 ~l~~~~p~~l~~l~~L~~L~Ls~N~-l~----------------~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 405 GFTGKIPPTLSNCSELVSLHLSFNY-LS----------------GTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp EEEEECCGGGGGCTTCCEEECCSSE-EE----------------SCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred ccccccCHHHhcCCCCCEEECcCCc-cc----------------CcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 3333334444444444444444431 11 1222222 2255555555555555555555555555
Q ss_pred CccEEEecCcccc-cCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhh
Q 044748 360 VLKRLTIDGTAIR-EVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIER 438 (602)
Q Consensus 360 ~L~~L~l~~n~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (602)
+|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-------------- 532 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-------------- 532 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG--------------
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH--------------
Confidence 5555555555555 4455555555555555555555555555555555555555555555555554
Q ss_pred hhhhccccchhccCCCCeEEeeccccccCCCh------------------------------------------------
Q 044748 439 LASFKLRLDLCMVKNLTSLKIIDCQKFKRLPN------------------------------------------------ 470 (602)
Q Consensus 439 l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------------------------------------------ 470 (602)
.+..+++|+.|++++|.+.+.+|.
T Consensus 533 --------~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (768)
T 3rgz_A 533 --------ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604 (768)
T ss_dssp --------GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred --------HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence 444555555555555544443333
Q ss_pred ----------------------hhhCCcccceEeecCcccc-cCcccccCCCCCcEEEccCCcc-cccchhhhcCCCCce
Q 044748 471 ----------------------EIGNSKCLTVLIVKGTAIR-EVPESLGQLSSLESLVLSNNKL-ERLPESFNQLSSLEY 526 (602)
Q Consensus 471 ----------------------~l~~~~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~l-~~l~~~l~~l~~L~~ 526 (602)
.+..+++|+.|++++|.++ .+|..+.++++|+.|+|++|++ +.+|..+.++++|+.
T Consensus 605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~ 684 (768)
T 3rgz_A 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684 (768)
T ss_dssp GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence 3334566777777777776 6777777777777777777777 477777777777777
Q ss_pred eecccccccC-Cchhhhccccccccccccee
Q 044748 527 LQLFENSLEG-IPEYLRSLPSKLTSLNLSID 556 (602)
Q Consensus 527 L~l~~N~l~~-~~~~l~~~~~~L~~L~l~~~ 556 (602)
||+++|++++ +|+.+..++ +|+.||+++|
T Consensus 685 LdLs~N~l~g~ip~~l~~l~-~L~~L~ls~N 714 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQAMSALT-MLTEIDLSNN 714 (768)
T ss_dssp EECCSSCCEECCCGGGGGCC-CCSEEECCSS
T ss_pred EECCCCcccCcCChHHhCCC-CCCEEECcCC
Confidence 7777777776 777777776 7777777654
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.6e-50 Score=438.01 Aligned_cols=528 Identities=17% Similarity=0.140 Sum_probs=392.3
Q ss_pred CCCcEEecCCCCcCcCCcc-ccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCc-c-Cccccceec
Q 044748 2 VNLKEIDLSGSESLTKLPD-LSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTG-I-HSKYLKILN 78 (602)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~-~-~~~~L~~L~ 78 (602)
+++++|++++|.+.+..+. |.++++|++|++++|.+.+..|..++.+++|++|++++| .+..+|.. + .+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEE
Confidence 4789999999985555455 999999999999999988888899999999999999999 66677764 5 899999999
Q ss_pred ccCCCCCCCCcccccccccchhccccc---cccCCccccCcccCceEeccccccccccccccc--ccCCccEEEeeCCCC
Q 044748 79 LWGCSNLNNFPEITSCHICIFELAEVG---IKELPSSIECLSNLRELLIMDCSELESISSSIF--KLKSLKSIVISHCSN 153 (602)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~L~~L~l~~---~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~ 153 (602)
+++|.+.+..+..+.++++|++|++++ .+..|..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 999987766667899999999999998 344566788999999999999977665555443 558999999999987
Q ss_pred ccccccCCCCCCCCCcCcc---------------------------cceeeecccCCCCCCccccccccCCC--CCcccc
Q 044748 154 FKRFLEIPSCNTDGCTGIE---------------------------RLASFKLKLEGCSSPQSLPINMFSFK--SLPSIK 204 (602)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~---------------------------~L~~L~l~~~~~~~~~~l~~~~~~~~--~L~~L~ 204 (602)
....+ ..+..++ +|+.|++++ +......+..+..++ +|+.|+
T Consensus 184 ~~~~~-------~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~--n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 184 KEFSP-------GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN--SQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp CCBCT-------TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT--SCCCEECTTTTGGGGGSCCCEEE
T ss_pred cccCh-------hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC--CcccccChhHhhccCcCCCCEEE
Confidence 76555 4454444 455555555 222223344555554 488999
Q ss_pred cccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccc------cccc----cccccccccEE
Q 044748 205 IIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIR------EVPE----SLGQLAILRRL 274 (602)
Q Consensus 205 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~------~l~~----~~~~l~~L~~L 274 (602)
+++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|... .+|. .+..+++|+.|
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 9888887777777888888999999888888888888888888999988876433 3443 46778899999
Q ss_pred eecCCCCccccccccccCCCCcEEEeecCCC-cccccc-----CCCCCCC----CCcchhccccccccCCCcccEEEEec
Q 044748 275 KLTNCSGLESISSSIFKLKSLKSIVISHCSN-FKRFLE-----IPSGNTD----GSTRIERLASSNLCMFKSLKYLEIVD 344 (602)
Q Consensus 275 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~-----~~~~~~~----~~~~~~~l~~~~~~~~~~L~~L~l~~ 344 (602)
++++|.+.+..+..+..+++|++|++++|.. ...... ....... ..+.+..++...+..+++|++|++++
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence 9999887777777788889999999987641 111110 0000000 22334444444455577777777777
Q ss_pred CCCCccCC-ccccCCCCccEEEecCcccccC-CccccccccCcEEeccCCCCC--CccCccccCCCCCCeEEeccCCCcc
Q 044748 345 CQNFKRLP-DELGNLKVLKRLTIDGTAIREV-PKSLSQLAILRWLKLTNCSGL--GRISSSIFKLKSLKSIEISNCSNFK 420 (602)
Q Consensus 345 ~~~~~~~~-~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (602)
|.+.+.++ ..+.++++|++|++++|++..+ +..+..+++|+.|++++|.+. +.+|..+..+++|++|++++|.+..
T Consensus 415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 494 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494 (680)
T ss_dssp SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence 77665544 4567777777777777777643 345666777777777777654 4566777778888888888877665
Q ss_pred ccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCC--------hhhhCCcccceEeecCcccccCc
Q 044748 421 RFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLP--------NEIGNSKCLTVLIVKGTAIREVP 492 (602)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~l~~~~~L~~L~L~~n~l~~l~ 492 (602)
..+. .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++.+|
T Consensus 495 i~~~----------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~ 552 (680)
T 1ziw_A 495 INDD----------------------MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552 (680)
T ss_dssp CCTT----------------------TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC
T ss_pred CChh----------------------hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC
Confidence 4443 56778889999999988765321 23677888999999999999887
Q ss_pred c-cccCCCCCcEEEccCCcccccchh-hhcCCCCceeecccccccCCchhhhc-ccccccccccceeecccc
Q 044748 493 E-SLGQLSSLESLVLSNNKLERLPES-FNQLSSLEYLQLFENSLEGIPEYLRS-LPSKLTSLNLSIDLRYCL 561 (602)
Q Consensus 493 ~-~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~~~~~l~~-~~~~L~~L~l~~~~~~~~ 561 (602)
. .|.++++|+.|++++|+++.+|.. |..+++|+.|++++|+++.++..... ..++|+.++++.|++.|.
T Consensus 553 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred HHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 5 578889999999999999888765 67889999999999999886665433 334889999999888763
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.3e-49 Score=426.78 Aligned_cols=505 Identities=17% Similarity=0.115 Sum_probs=385.9
Q ss_pred CCCcEEecCCCCcCcCCcc-ccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCcc-Cccccceecc
Q 044748 2 VNLKEIDLSGSESLTKLPD-LSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGI-HSKYLKILNL 79 (602)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~~~L~~L~l 79 (602)
+++++|++++|.+.+..+. |.++++|++|++++|.+.+..|..|+++++|++|++++|......|..+ .+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 3578888888885555455 8888888888888888777778888888888888888885555556666 8888888888
Q ss_pred cCCCCCCCCcccccccccchhccccc--cccCC-ccccCcccCceEecccccccccccccccccCCcc--EEEeeCCCCc
Q 044748 80 WGCSNLNNFPEITSCHICIFELAEVG--IKELP-SSIECLSNLRELLIMDCSELESISSSIFKLKSLK--SIVISHCSNF 154 (602)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~ 154 (602)
++|.+.+..+..+..+++|++|++++ +..++ ..+..+++|++|++++|.+.+..+..+..+++|+ +|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 88876665566778888888888887 44431 2334488888888888877666666777888888 7888888776
Q ss_pred cccccCCCCCCCCCcCcccceeeecccCCCCCCccccccccCCCCC--cccccccCC---CCcccccchhccc--cccEE
Q 044748 155 KRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPINMFSFKSL--PSIKIIHCP---NIESLPSSLCMFK--SLTSL 227 (602)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L--~~L~l~~~~---~~~~~~~~l~~~~--~L~~L 227 (602)
...+ ..+. ...|++|++++ +... +..+..+..+ +.+.+.... .....+..+..+. +|+.|
T Consensus 193 ~~~~-------~~~~-~~~L~~L~l~~--~~~~---~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L 259 (606)
T 3t6q_A 193 GIEP-------GAFD-SAVFQSLNFGG--TQNL---LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259 (606)
T ss_dssp EECT-------TTTT-TCEEEEEECTT--CSCH---HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred ccCh-------hHhh-hccccccccCC--chhH---HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence 6554 3333 35788888877 3322 2222222222 222221111 1111122233332 78999
Q ss_pred eeeccCCCccCCcccCCCCCCcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCcc
Q 044748 228 EIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFK 307 (602)
Q Consensus 228 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 307 (602)
++++|.+.+..+..|..+++|+.|++++|+++.+|..+..+++|++|++++|.+....+..+..+++|++|++++|....
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 339 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence 99999888877777999999999999999999999888899999999999998877777888899999999999874322
Q ss_pred ccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccC--CccccCCCCccEEEecCcccccC-CccccccccC
Q 044748 308 RFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRL--PDELGNLKVLKRLTIDGTAIREV-PKSLSQLAIL 384 (602)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L 384 (602)
.++...+..+++|++|++++|.+.+.. +..+..+++|++|++++|.++.+ +..+..+++|
T Consensus 340 -----------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 402 (606)
T 3t6q_A 340 -----------------ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402 (606)
T ss_dssp -----------------BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC
T ss_pred -----------------ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC
Confidence 455554556899999999999876654 66788999999999999998844 5678889999
Q ss_pred cEEeccCCCCCCccCc-cccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccc
Q 044748 385 RWLKLTNCSGLGRISS-SIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQ 463 (602)
Q Consensus 385 ~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 463 (602)
++|++++|.+.+..+. .+..+++|++|++++|.+....+. .+..+++|++|++++|.
T Consensus 403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ----------------------LFDGLPALQHLNLQGNH 460 (606)
T ss_dssp SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT----------------------TTTTCTTCCEEECTTCB
T ss_pred CeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH----------------------HHhCCCCCCEEECCCCC
Confidence 9999999988766554 478899999999999988776665 67788999999999998
Q ss_pred ccc---CCChhhhCCcccceEeecCcccccC-cccccCCCCCcEEEccCCccc-ccchhhhcCCCCceeecccccccCC-
Q 044748 464 KFK---RLPNEIGNSKCLTVLIVKGTAIREV-PESLGQLSSLESLVLSNNKLE-RLPESFNQLSSLEYLQLFENSLEGI- 537 (602)
Q Consensus 464 ~~~---~~~~~l~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~l~~N~l~~~- 537 (602)
+.+ ..+..+..+++|++|++++|.++.+ |..+.++++|+.|++++|+++ ..|..+..+++| +|++++|+++.+
T Consensus 461 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred CCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccC
Confidence 776 2335688899999999999999866 577899999999999999995 456678899999 999999999994
Q ss_pred chhhhcccccccccccceeeccc
Q 044748 538 PEYLRSLPSKLTSLNLSIDLRYC 560 (602)
Q Consensus 538 ~~~l~~~~~~L~~L~l~~~~~~~ 560 (602)
|..+..++ +|+.|+++.|++.|
T Consensus 540 ~~~~~~l~-~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 540 PSLLPILS-QQRTINLRQNPLDC 561 (606)
T ss_dssp GGGHHHHH-TSSEEECTTCCEEC
T ss_pred HhhcccCC-CCCEEeCCCCCccc
Confidence 44566665 89999999999876
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.9e-50 Score=429.64 Aligned_cols=479 Identities=17% Similarity=0.147 Sum_probs=330.9
Q ss_pred CCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCcc-CccccceecccCCCCCCCCcccccccccchhccc
Q 044748 25 ENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGI-HSKYLKILNLWGCSNLNNFPEITSCHICIFELAE 103 (602)
Q Consensus 25 ~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 103 (602)
+++++|++++|.+.+..+..|+++++|++|++++|......|..+ .+++|++|++++|.+.+..|..+.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 445555555544444434444555555555555442222223333 4455555555554444444444455555555555
Q ss_pred cc--cccCC-ccccCcccCceEecccccccc-cccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccce----
Q 044748 104 VG--IKELP-SSIECLSNLRELLIMDCSELE-SISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLA---- 175 (602)
Q Consensus 104 ~~--~~~l~-~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~---- 175 (602)
++ +..++ ..++++++|++|++++|.+.+ .+|..+.++++|++|++++|++....+ ..+..+++|+
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV-------NDLQFLRENPQVNL 184 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT-------TTTHHHHHCTTCCC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh-------hhhhhhhccccccc
Confidence 44 32222 344455555555555554333 334445555555555555554444333 3344444333
Q ss_pred eeecccCCCCCCccccccccCCCCCcccccccCCCC-cccccchhcccc-------------------------------
Q 044748 176 SFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCPNI-ESLPSSLCMFKS------------------------------- 223 (602)
Q Consensus 176 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~------------------------------- 223 (602)
+|++++ +.+..++.......+|+.|++++|... +..|..+..++.
T Consensus 185 ~L~l~~---n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l 261 (606)
T 3vq2_A 185 SLDMSL---NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261 (606)
T ss_dssp EEECTT---CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS
T ss_pred eeeccC---CCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc
Confidence 344444 233333333333334555555554333 122333333333
Q ss_pred -ccEEee-eccCCCccCCcccCCCCCCcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEee
Q 044748 224 -LTSLEI-VDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVIS 301 (602)
Q Consensus 224 -L~~L~l-~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 301 (602)
++.+++ ..+.+.+..+. +..+++|+.|+++++.++.+| .+..+++|+.|++++|.. +.+| .+ .+++|++|+++
T Consensus 262 ~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~ 336 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLT 336 (606)
T ss_dssp EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEE
T ss_pred cHhheeccccccccccccc-cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeecc
Confidence 344444 44445555555 888999999999999999888 688899999999999987 7777 44 89999999999
Q ss_pred cCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCcc--CCccccCCCCccEEEecCcccccCCcccc
Q 044748 302 HCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKR--LPDELGNLKVLKRLTIDGTAIREVPKSLS 379 (602)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~i~~l~~~~~ 379 (602)
+|.... .+ ....+++|++|++++|.+.+. .+..+..+++|++|++++|.++.+|..+.
T Consensus 337 ~n~~~~-----------------~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 396 (606)
T 3vq2_A 337 MNKGSI-----------------SF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM 396 (606)
T ss_dssp SCSSCE-----------------EC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCT
T ss_pred CCcCcc-----------------ch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhcc
Confidence 975433 22 223489999999999987654 36778899999999999999999888899
Q ss_pred ccccCcEEeccCCCCCCccC-ccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEE
Q 044748 380 QLAILRWLKLTNCSGLGRIS-SSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLK 458 (602)
Q Consensus 380 ~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~ 458 (602)
.+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+....|. .+..+++|++|+
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~ 454 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG----------------------IFLGLTSLNTLK 454 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT----------------------TTTTCTTCCEEE
T ss_pred CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh----------------------hhcCCCCCCEEE
Confidence 99999999999998877766 6788999999999999998887776 778899999999
Q ss_pred eecccccc-CCChhhhCCcccceEeecCcccccC-cccccCCCCCcEEEccCCccccc-chhhhcCCCCceeeccccccc
Q 044748 459 IIDCQKFK-RLPNEIGNSKCLTVLIVKGTAIREV-PESLGQLSSLESLVLSNNKLERL-PESFNQLSSLEYLQLFENSLE 535 (602)
Q Consensus 459 l~~~~~~~-~~~~~l~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~N~l~ 535 (602)
+++|.+.+ ..|..+..+++|++|++++|.++.+ |..+..+++|+.|++++|+++.+ |..+..+++|++|++++|+++
T Consensus 455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 99999887 4788899999999999999999866 56789999999999999999665 778999999999999999999
Q ss_pred CCchhhhcccccccccccceeeccc
Q 044748 536 GIPEYLRSLPSKLTSLNLSIDLRYC 560 (602)
Q Consensus 536 ~~~~~l~~~~~~L~~L~l~~~~~~~ 560 (602)
.+|..+..++.+|+.|+++.|++.|
T Consensus 535 ~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 535 TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred ccCHhHhhhcccCcEEEccCCCccc
Confidence 9999988888789999999999877
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.3e-48 Score=421.72 Aligned_cols=493 Identities=16% Similarity=0.117 Sum_probs=346.3
Q ss_pred CCCCcEEecCCCCcCcCCcc-ccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCC-Ccc-Ccccccee
Q 044748 1 LVNLKEIDLSGSESLTKLPD-LSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLP-TGI-HSKYLKIL 77 (602)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~-~~~~L~~L 77 (602)
+++|++|++++|.+.+..|. |.++++|++|++++|.+....+..|+++++|++|++++|. +..++ ..+ .+++|++|
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITL 126 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEE
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEE
Confidence 46788999999886555566 8889999999999887655444568888999999999884 45555 445 88889999
Q ss_pred cccCCCCCCCCcccccccccchhccccc--cccCCc-cc--cCcccCceEeccccccccccccccccc------------
Q 044748 78 NLWGCSNLNNFPEITSCHICIFELAEVG--IKELPS-SI--ECLSNLRELLIMDCSELESISSSIFKL------------ 140 (602)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~l~~-~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l------------ 140 (602)
++++|.+.+..+..+..+++|++|++++ +..++. .+ ..+++|++|++++|.+.+..+..+..+
T Consensus 127 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 206 (680)
T 1ziw_A 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206 (680)
T ss_dssp ECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC
T ss_pred ECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccc
Confidence 9998887777777788888888888877 444443 23 245778888888876655444444333
Q ss_pred ---------------CCccEEEeeCCCCccccccCCCCCCCCCcCccc--ceeeecccCCCCCCcc-ccccccCCCCCcc
Q 044748 141 ---------------KSLKSIVISHCSNFKRFLEIPSCNTDGCTGIER--LASFKLKLEGCSSPQS-LPINMFSFKSLPS 202 (602)
Q Consensus 141 ---------------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~--L~~L~l~~~~~~~~~~-l~~~~~~~~~L~~ 202 (602)
++|++|++++|.+....+ ..+.+++. |++|++++ +.+.. .+..+..+++|+.
T Consensus 207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~-------~~~~~l~~~~L~~L~Ls~---n~l~~~~~~~~~~l~~L~~ 276 (680)
T 1ziw_A 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN-------TTFLGLKWTNLTMLDLSY---NNLNVVGNDSFAWLPQLEY 276 (680)
T ss_dssp CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT-------TTTGGGGGSCCCEEECTT---SCCCEECTTTTTTCTTCCE
T ss_pred cChhhHHHHHHHhhhccccEEEccCCcccccCh-------hHhhccCcCCCCEEECCC---CCcCccCcccccCcccccE
Confidence 345555555555554444 45555544 77777766 22332 2344556666777
Q ss_pred cccccCCCCcccccchhccccccEEeeeccCCCc-----cCC----cccCCCCCCcEEEcCccccccccc-ccccccc--
Q 044748 203 IKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFK-----RLP----DELGNLKALQRLTVDRTAIREVPE-SLGQLAI-- 270 (602)
Q Consensus 203 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~----~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~-- 270 (602)
|++++|.+.+..+..+..+++|+.|++.+|...+ .+| ..+..+++|+.|++++|.++.++. .+.++++
T Consensus 277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 356 (680)
T 1ziw_A 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356 (680)
T ss_dssp EECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCC
T ss_pred eeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCc
Confidence 7776666655555555555555555555432221 111 134445555555555555543322 2344444
Q ss_pred --------------------------ccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchh
Q 044748 271 --------------------------LRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIE 324 (602)
Q Consensus 271 --------------------------L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 324 (602)
|+.|++++|.+.+..+..+..+++|+.|++++|.. + +
T Consensus 357 ~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~----------------~ 419 (680)
T 1ziw_A 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI-G----------------Q 419 (680)
T ss_dssp EEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-E----------------E
T ss_pred EEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcC-c----------------c
Confidence 55555555544444455555666666666666421 1 2
Q ss_pred ccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccc---cCCccccccccCcEEeccCCCCCCccCcc
Q 044748 325 RLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIR---EVPKSLSQLAILRWLKLTNCSGLGRISSS 401 (602)
Q Consensus 325 ~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 401 (602)
.++...+.++++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+..
T Consensus 420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~ 499 (680)
T 1ziw_A 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499 (680)
T ss_dssp ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh
Confidence 455555666899999999999988777888999999999999999876 56788899999999999999888766777
Q ss_pred ccCCCCCCeEEeccCCCcccccc-CCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccce
Q 044748 402 IFKLKSLKSIEISNCSNFKRFLK-IPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTV 480 (602)
Q Consensus 402 ~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 480 (602)
+..+++|++|++++|.+....+. +|.. ....+..+++|+.|++++|.+....+..+..+++|++
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~---------------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 500 LEGLEKLEILDLQHNNLARLWKHANPGG---------------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp TTTCTTCCEEECCSSCCGGGGSTTSTTS---------------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred hccccccCEEeCCCCCccccchhhccCC---------------cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 89999999999999987653221 0000 0013678899999999999987655567899999999
Q ss_pred EeecCcccccCccc-ccCCCCCcEEEccCCcccccchh-hh-cCCCCceeecccccccC
Q 044748 481 LIVKGTAIREVPES-LGQLSSLESLVLSNNKLERLPES-FN-QLSSLEYLQLFENSLEG 536 (602)
Q Consensus 481 L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~l~~l~~~-l~-~l~~L~~L~l~~N~l~~ 536 (602)
|++++|+++.+|.. |..+++|+.|++++|+++.++.. +. .+++|+.|++++|++.+
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 99999999999864 67899999999999999887764 66 78999999999999988
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-47 Score=411.00 Aligned_cols=480 Identities=18% Similarity=0.140 Sum_probs=394.8
Q ss_pred CCCcEEecCCCCcCcCCcc-ccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCcc-Cccccceecc
Q 044748 2 VNLKEIDLSGSESLTKLPD-LSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGI-HSKYLKILNL 79 (602)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~~~L~~L~l 79 (602)
+++++|++++|++.+..+. |.++++|++|++++|.+.+..|..|+++++|++|++++|......|..+ .+++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 5789999999996555555 9999999999999999888778899999999999999995544557777 9999999999
Q ss_pred cCCCCCCCCcccccccccchhccccc--cc--cCCccccCcccCceEecccccccccccccccccCCcc----EEEeeCC
Q 044748 80 WGCSNLNNFPEITSCHICIFELAEVG--IK--ELPSSIECLSNLRELLIMDCSELESISSSIFKLKSLK----SIVISHC 151 (602)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~L~~L~l~~--~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~~~ 151 (602)
++|.+.+..+..++++++|++|++++ +. .+|..++++++|++|++++|.+.+..+..+..+.+|+ ++++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 99997776667899999999999999 44 5799999999999999999987776676677666654 8999999
Q ss_pred CCccccccCCCCCCCCCcCcccceeeecccCCCCCCccccccccCCCCCcccc---------------------------
Q 044748 152 SNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPINMFSFKSLPSIK--------------------------- 204 (602)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~--------------------------- 204 (602)
.+....+ ..+... +|++|+++++... ....|..+..++.++.+.
T Consensus 192 ~l~~~~~-------~~~~~~-~L~~L~L~~n~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 262 (606)
T 3vq2_A 192 PIDFIQD-------QAFQGI-KLHELTLRGNFNS-SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262 (606)
T ss_dssp CCCEECT-------TTTTTC-EEEEEEEESCCSC-HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred CcceeCc-------ccccCc-eeeeeeccCCccc-hhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence 8765444 444444 8999999883211 013333334444444333
Q ss_pred -----c-ccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccccccccccccEEeecC
Q 044748 205 -----I-IHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTN 278 (602)
Q Consensus 205 -----l-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~ 278 (602)
+ ..+.+.+.+|. +..+++|+.|++.+|.+.. ++ .+..+++|+.|++++|+++.+|. + .+++|+.|++++
T Consensus 263 l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l~~ 337 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLTLTM 337 (606)
T ss_dssp EEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEEEES
T ss_pred Hhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCccccc-C-CCCccceeeccC
Confidence 3 34445555665 8889999999999988744 45 78899999999999999999995 5 999999999999
Q ss_pred CCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCC
Q 044748 279 CSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNL 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 358 (602)
|...... .+..+++|++|++++|. ++.. ..++. .+..+++|++|++++|.+.+ ++..+..+
T Consensus 338 n~~~~~~--~~~~l~~L~~L~ls~n~-l~~~--------------~~~~~-~~~~~~~L~~L~L~~n~l~~-~~~~~~~l 398 (606)
T 3vq2_A 338 NKGSISF--KKVALPSLSYLDLSRNA-LSFS--------------GCCSY-SDLGTNSLRHLDLSFNGAII-MSANFMGL 398 (606)
T ss_dssp CSSCEEC--CCCCCTTCCEEECCSSC-EEEE--------------EECCH-HHHCCSCCCEEECCSCSEEE-ECCCCTTC
T ss_pred CcCccch--hhccCCCCCEEECcCCc-cCCC--------------cchhh-hhccCCcccEeECCCCcccc-chhhccCC
Confidence 9665544 56789999999999963 3211 00122 23348999999999998544 56788999
Q ss_pred CCccEEEecCcccccCC--ccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccc-cccCCCCCCCCCcc
Q 044748 359 KVLKRLTIDGTAIREVP--KSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKR-FLKIPSCNIDGGTR 435 (602)
Q Consensus 359 ~~L~~L~l~~n~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~ 435 (602)
++|++|++++|.+..++ ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+. +|.
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----------- 467 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN----------- 467 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-----------
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH-----------
Confidence 99999999999999664 4788999999999999999888888999999999999999988764 555
Q ss_pred hhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccC-cccccCCCCCcEEEccCCccccc
Q 044748 436 IERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREV-PESLGQLSSLESLVLSNNKLERL 514 (602)
Q Consensus 436 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~l 514 (602)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|+++.+ |..+..+++|+.|++++|+++.+
T Consensus 468 -----------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 536 (606)
T 3vq2_A 468 -----------VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536 (606)
T ss_dssp -----------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE
T ss_pred -----------hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc
Confidence 678899999999999999988888999999999999999999876 78899999999999999999999
Q ss_pred chhhhcCC-CCceeecccccccC
Q 044748 515 PESFNQLS-SLEYLQLFENSLEG 536 (602)
Q Consensus 515 ~~~l~~l~-~L~~L~l~~N~l~~ 536 (602)
|..+..++ +|++|++++|++.+
T Consensus 537 p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 537 KGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp ESCGGGSCTTCCEEECCSCCCCC
T ss_pred CHhHhhhcccCcEEEccCCCccc
Confidence 99898887 59999999999998
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-46 Score=403.58 Aligned_cols=513 Identities=18% Similarity=0.147 Sum_probs=411.4
Q ss_pred cEEecCCCCcCcCCcc-ccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCcc-CccccceecccCC
Q 044748 5 KEIDLSGSESLTKLPD-LSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGI-HSKYLKILNLWGC 82 (602)
Q Consensus 5 ~~L~l~~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~~~L~~L~l~~~ 82 (602)
++++.++.. ...+|. +. +++++|++++|.+.+..|..|+.+++|++|++++|......|..+ .+++|++|++++|
T Consensus 15 ~~~~c~~~~-l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 15 KTYNCENLG-LNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TEEECTTSC-CSSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEECCCCC-cccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 467777776 556676 65 479999999999888778899999999999999996555567777 9999999999999
Q ss_pred CCCCCCcccccccccchhccccc--cccC-CccccCcccCceEecccccccccccccccccCCccEEEeeCCCCcccccc
Q 044748 83 SNLNNFPEITSCHICIFELAEVG--IKEL-PSSIECLSNLRELLIMDCSELESISSSIFKLKSLKSIVISHCSNFKRFLE 159 (602)
Q Consensus 83 ~~~~~~~~~~~~~~~L~~L~l~~--~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 159 (602)
.+.+..|..+..+++|++|++++ +..+ |..++.+++|++|++++|.+.+.....+..+++|++|++++|.+....+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 170 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK- 170 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH-
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh-
Confidence 98888888899999999999998 5555 5678899999999999997766333445568999999999998877666
Q ss_pred CCCCCCCCCcCcccce--eeecccCCCCCCccccccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCC--
Q 044748 160 IPSCNTDGCTGIERLA--SFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNF-- 235 (602)
Q Consensus 160 ~~~~~~~~~~~l~~L~--~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-- 235 (602)
..+..+++|+ .|++++ +.+..++........|+.|++++|. .++..+..+..+....+.-....
T Consensus 171 ------~~~~~l~~L~~l~L~l~~---n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 171 ------EDMSSLQQATNLSLNLNG---NDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp ------HHHHTTTTCCSEEEECTT---CCCCEECTTTTTTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred ------hhhhhhcccceeEEecCC---CccCccChhHhhhccccccccCCch---hHHHHhhhccccchhheechhhccc
Confidence 6788888888 778887 4556666666666789999999885 33444444544443333322211
Q ss_pred ---ccCCcccCCCC--CCcEEEcCcccccccccc-ccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCcccc
Q 044748 236 ---KRLPDELGNLK--ALQRLTVDRTAIREVPES-LGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRF 309 (602)
Q Consensus 236 ---~~~~~~~~~l~--~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 309 (602)
...+..+..+. +|+.|++++|.++.++.. +..+++|+.|++++|.+. .+|..+..+++|++|++++|. ++
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~-l~-- 314 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK-FE-- 314 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC-CS--
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCC-cC--
Confidence 11122333333 799999999999987665 888999999999999655 788889999999999999963 32
Q ss_pred ccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCc-cccCCCCccEEEecCcccccC---CccccccccCc
Q 044748 310 LEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPD-ELGNLKVLKRLTIDGTAIREV---PKSLSQLAILR 385 (602)
Q Consensus 310 ~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~l---~~~~~~l~~L~ 385 (602)
.++...+..+++|++|++++|.+.+.++. .+..+++|++|++++|.++.+ +..+..+++|+
T Consensus 315 ---------------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 379 (606)
T 3t6q_A 315 ---------------NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379 (606)
T ss_dssp ---------------BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCC
T ss_pred ---------------cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCC
Confidence 44444445589999999999988766654 488999999999999999855 56788999999
Q ss_pred EEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccc
Q 044748 386 WLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKF 465 (602)
Q Consensus 386 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 465 (602)
+|++++|.+.+..+..+..+++|++|++++|.+....+.. .+..+++|++|++++|.+.
T Consensus 380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------------------~~~~l~~L~~L~l~~n~l~ 438 (606)
T 3t6q_A 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS---------------------PFQNLHLLKVLNLSHSLLD 438 (606)
T ss_dssp EEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC---------------------TTTTCTTCCEEECTTCCCB
T ss_pred EEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch---------------------hhhCcccCCEEECCCCccC
Confidence 9999999888888888999999999999999877655431 4678899999999999998
Q ss_pred cCCChhhhCCcccceEeecCccccc--C--cccccCCCCCcEEEccCCccccc-chhhhcCCCCceeecccccccC-Cch
Q 044748 466 KRLPNEIGNSKCLTVLIVKGTAIRE--V--PESLGQLSSLESLVLSNNKLERL-PESFNQLSSLEYLQLFENSLEG-IPE 539 (602)
Q Consensus 466 ~~~~~~l~~~~~L~~L~L~~n~l~~--l--~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~N~l~~-~~~ 539 (602)
+..+..+..+++|++|++++|.++. + +..+..+++|+.|++++|+++.+ |..+..+++|++|++++|++++ .|+
T Consensus 439 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 518 (606)
T 3t6q_A 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518 (606)
T ss_dssp TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence 8888899999999999999999974 2 25688999999999999999666 5679999999999999999998 677
Q ss_pred hhhccccccccccccee---------eccccccccccchhhhhhc
Q 044748 540 YLRSLPSKLTSLNLSID---------LRYCLKLDSNELSEIVKGG 575 (602)
Q Consensus 540 ~l~~~~~~L~~L~l~~~---------~~~~~~L~~~~l~~~~~~~ 575 (602)
.+..++ .| .|+++.| +..+++|+.+++++|++..
T Consensus 519 ~l~~l~-~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 519 ALSHLK-GI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp GGTTCC-SC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred HhCccc-cc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 777776 77 8887755 3456788889999887754
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-45 Score=404.79 Aligned_cols=499 Identities=16% Similarity=0.125 Sum_probs=371.2
Q ss_pred CCCcEEecCCCCcCcCCcc-ccCCCCCcEEEcCCCcchhcc-hhhhccCCCCcEEeccCCccccCCCCcc-Cccccceec
Q 044748 2 VNLKEIDLSGSESLTKLPD-LSRAENLKILRLDDCLSLTET-HSSIQYLNKLEFLTLEMCKSLTSLPTGI-HSKYLKILN 78 (602)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~~~L~~L~ 78 (602)
+++++|||++|.+.+..+. |.++++|++|+|++|...+.+ |..|+++++|++|++++|......|..+ .+++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 5788889998886555555 888888999999888666666 6788888889999998885555557777 888899999
Q ss_pred ccCCCCCCCCccc--ccccccchhccccc--cccC--CccccCcccCceEeccccccccccccccccc--CCccEEEeeC
Q 044748 79 LWGCSNLNNFPEI--TSCHICIFELAEVG--IKEL--PSSIECLSNLRELLIMDCSELESISSSIFKL--KSLKSIVISH 150 (602)
Q Consensus 79 l~~~~~~~~~~~~--~~~~~~L~~L~l~~--~~~l--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~ 150 (602)
+++|.+.+..+.. +..+++|++|++++ +..+ +..++++++|++|++++|.+.+..+..+..+ ++|+.|++++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 9888877655554 78888888888888 4433 3568888888888888887776666667666 7888888888
Q ss_pred CCCccccccCCCCCCCCCcCccc------ceeeecccCCCCCCccccccccC---CCCCcccccccCC---------CCc
Q 044748 151 CSNFKRFLEIPSCNTDGCTGIER------LASFKLKLEGCSSPQSLPINMFS---FKSLPSIKIIHCP---------NIE 212 (602)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~------L~~L~l~~~~~~~~~~l~~~~~~---~~~L~~L~l~~~~---------~~~ 212 (602)
|.+....+ ..+..+.+ |+.|+++++. .....+..+.. ..+++.+.+..+. +..
T Consensus 184 n~l~~~~~-------~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 184 NSLYSRVS-------VDWGKCMNPFRNMVLEILDVSGNG--WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp SBSCCCCC-------CCCCSSSCTTTTCCBSEEBCSSCC--SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred Cccccccc-------cchhhcCCccccCceeEEecCCCc--CchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 87776655 44444443 8888888732 22233333222 2455566555221 111
Q ss_pred ccccchhc--cccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccc-cccccccccccEEeecCCCCcccccccc
Q 044748 213 SLPSSLCM--FKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREV-PESLGQLAILRRLKLTNCSGLESISSSI 289 (602)
Q Consensus 213 ~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 289 (602)
.....+.. .++|+.|++++|.+.+..+..+..+++|+.|++++|+++.+ +..+..+++|+.|++++|.+....+..+
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 334 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh
Confidence 22223333 36899999999988888888889999999999999999866 4568889999999999998877777888
Q ss_pred ccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCc
Q 044748 290 FKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGT 369 (602)
Q Consensus 290 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 369 (602)
..+++|+.|++++|. ++ .++...+..+++|++|++++|.+.+ +..+++|++|++++|
T Consensus 335 ~~l~~L~~L~L~~N~-i~-----------------~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N 391 (844)
T 3j0a_A 335 YGLPKVAYIDLQKNH-IA-----------------IIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGN 391 (844)
T ss_dssp SSCTTCCEEECCSCC-CC-----------------CCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESC
T ss_pred cCCCCCCEEECCCCC-CC-----------------ccChhhhcCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCC
Confidence 899999999999862 33 4555555668899999999987643 233788999999999
Q ss_pred ccccCCccccccccCcEEeccCCCCCCc-cCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccch
Q 044748 370 AIREVPKSLSQLAILRWLKLTNCSGLGR-ISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDL 448 (602)
Q Consensus 370 ~i~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 448 (602)
+++.+|.. ..+++.+++++|.+.+. .+..+..+++|++|++++|.+....+.. .+
T Consensus 392 ~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------------------~~ 447 (844)
T 3j0a_A 392 KLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ---------------------TP 447 (844)
T ss_dssp CCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS---------------------SS
T ss_pred Cccccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc---------------------cc
Confidence 99888754 46788999999876543 2233557899999999998876543321 23
Q ss_pred hccCCCCeEEeecccccc-----CCChhhhCCcccceEeecCcccccCc-ccccCCCCCcEEEccCCcccccchhhhcCC
Q 044748 449 CMVKNLTSLKIIDCQKFK-----RLPNEIGNSKCLTVLIVKGTAIREVP-ESLGQLSSLESLVLSNNKLERLPESFNQLS 522 (602)
Q Consensus 449 ~~~~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~ 522 (602)
..+++|+.|++++|.+.. ..+..+..+++|++|+|++|.++.++ ..+..+++|+.|+|++|+|+.+|..... +
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~ 526 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-A 526 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-S
T ss_pred ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-c
Confidence 457889999999988763 34456788899999999999998776 4578899999999999999888764323 8
Q ss_pred CCceeecccccccCCchhhhcccccccccccceeeccc
Q 044748 523 SLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLRYC 560 (602)
Q Consensus 523 ~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~~~~ 560 (602)
+|+.|++++|++++++... ++ +|+.|++++|++.|
T Consensus 527 ~L~~L~Ls~N~l~~~~~~~--~~-~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 527 NLEILDISRNQLLAPNPDV--FV-SLSVLDITHNKFIC 561 (844)
T ss_dssp CCCEEEEEEECCCCCCSCC--CS-SCCEEEEEEECCCC
T ss_pred cccEEECCCCcCCCCChhH--hC-CcCEEEecCCCccc
Confidence 8999999999999843332 33 78899999999877
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-44 Score=384.16 Aligned_cols=480 Identities=19% Similarity=0.160 Sum_probs=303.0
Q ss_pred CCCcEEecCCCCcCcCCcc-ccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCcc-Cccccceecc
Q 044748 2 VNLKEIDLSGSESLTKLPD-LSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGI-HSKYLKILNL 79 (602)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~~~L~~L~l 79 (602)
+++++|++++|++.+..+. |.++++|++|++++|.+.+..+..|+++++|++|++++|......|..+ .+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 3567777777774444343 7777777777777777666556667777777777777774333333444 7777777777
Q ss_pred cCCCCCCCCcccccccccchhccccc--cc--cCCccccCcccCceEecccccccccccccccccCCc----cEEEeeCC
Q 044748 80 WGCSNLNNFPEITSCHICIFELAEVG--IK--ELPSSIECLSNLRELLIMDCSELESISSSIFKLKSL----KSIVISHC 151 (602)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~L~~L~l~~--~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~ 151 (602)
++|.+.+..+..++.+++|++|++++ +. .+|..++++++|++|++++|.+.+..+..+..+++| +++++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 77765544444567777777777776 33 356777777777777777776655555556666666 67777777
Q ss_pred CCccccccCCCCCCCCCcCcccceeeecccCCCCCCccccccccCCCCCcccccccCCCC-----ccc-ccchhccc--c
Q 044748 152 SNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCPNI-----ESL-PSSLCMFK--S 223 (602)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-----~~~-~~~l~~~~--~ 223 (602)
.+....+ ..+... +|+.|+++++. .....++..+..++.++...+...... ..+ ...+..+. .
T Consensus 188 ~l~~~~~-------~~~~~~-~L~~L~l~~n~-~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 258 (570)
T 2z63_A 188 PMNFIQP-------GAFKEI-RLHKLTLRNNF-DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258 (570)
T ss_dssp CCCEECT-------TTTTTC-EEEEEEEESCC-SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred CceecCH-------HHhccC-cceeEeccccc-ccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence 6665544 444444 67777776631 122233444444444444333221110 011 11122222 3
Q ss_pred ccEEeeecc-CCCccCCcccCCCCCCcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEeec
Q 044748 224 LTSLEIVDC-QNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISH 302 (602)
Q Consensus 224 L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 302 (602)
++.+++.++ .+.+..+..+..+++|+.|++++|.++.+|..+..+ +|+.|++++|.+. .+|. ..+++|++|++++
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~ 334 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTS 334 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEES
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcC
Confidence 455666655 444556666777777888888887777777776666 7788888777554 4443 3567777777777
Q ss_pred CCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccC--CccccCCCCccEEEecCcccccCCccccc
Q 044748 303 CSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRL--PDELGNLKVLKRLTIDGTAIREVPKSLSQ 380 (602)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~i~~l~~~~~~ 380 (602)
|.... ..+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.++.++..+..
T Consensus 335 n~~~~-----------------~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 394 (570)
T 2z63_A 335 NKGGN-----------------AFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394 (570)
T ss_dssp CBSCC-----------------BCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEET
T ss_pred Ccccc-----------------cccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccc
Confidence 53221 1111 23677777777777654432 45566777777777777777766655677
Q ss_pred cccCcEEeccCCCCCCccC-ccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEe
Q 044748 381 LAILRWLKLTNCSGLGRIS-SSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKI 459 (602)
Q Consensus 381 l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l 459 (602)
+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+....+. .+..+++|++|++
T Consensus 395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~l 452 (570)
T 2z63_A 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG----------------------IFNGLSSLEVLKM 452 (570)
T ss_dssp CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT----------------------TTTTCTTCCEEEC
T ss_pred cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh----------------------hhhcCCcCcEEEC
Confidence 7777777777776655444 3566677777777777766655554 5566677777777
Q ss_pred eccccc-cCCChhhhCCcccceEeecCcccccC-cccccCCCCCcEEEccCCcccccch-hhhcCCCCceeecccccccC
Q 044748 460 IDCQKF-KRLPNEIGNSKCLTVLIVKGTAIREV-PESLGQLSSLESLVLSNNKLERLPE-SFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 460 ~~~~~~-~~~~~~l~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~N~l~~ 536 (602)
++|.+. +.+|..+..+++|++|++++|+++.+ |..+..+++|+.|++++|+++.++. .+..+++|++|++++|++++
T Consensus 453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 777665 35666667777777777777777655 5566777777777777777755543 46667777777777777776
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-43 Score=391.63 Aligned_cols=510 Identities=17% Similarity=0.126 Sum_probs=402.2
Q ss_pred cEEecCCCCcCcCCccccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCC-CCcc-CccccceecccCC
Q 044748 5 KEIDLSGSESLTKLPDLSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSL-PTGI-HSKYLKILNLWGC 82 (602)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~-~~~~L~~L~l~~~ 82 (602)
+..|.++++ ...+|. ..+++++|+|++|.+.+..|..|.++++|++|++++|.....+ |..+ .+++|++|++++|
T Consensus 7 ~~~dcs~~~-L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCN-LTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCC-SSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCC-CCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 457778887 566676 5689999999999988888899999999999999999766677 5556 9999999999999
Q ss_pred CCCCCCcccccccccchhccccc--cc-cCCcc--ccCcccCceEeccccccccccc-ccccccCCccEEEeeCCCCccc
Q 044748 83 SNLNNFPEITSCHICIFELAEVG--IK-ELPSS--IECLSNLRELLIMDCSELESIS-SSIFKLKSLKSIVISHCSNFKR 156 (602)
Q Consensus 83 ~~~~~~~~~~~~~~~L~~L~l~~--~~-~l~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~ 156 (602)
.+.+..|..+.++++|++|++++ +. ..|.. ++.+++|++|++++|.+.+..+ ..+.++++|++|++++|.+...
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 98888899999999999999998 43 35554 8999999999999997766544 5689999999999999988776
Q ss_pred cccCCCCCCCCCcCc--ccceeeecccCCCCCCccccccccCCCC------CcccccccCCCCcccccchhcc---cccc
Q 044748 157 FLEIPSCNTDGCTGI--ERLASFKLKLEGCSSPQSLPINMFSFKS------LPSIKIIHCPNIESLPSSLCMF---KSLT 225 (602)
Q Consensus 157 ~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~l~~~~~~~~~------L~~L~l~~~~~~~~~~~~l~~~---~~L~ 225 (602)
.+ ..+..+ ++|+.|+++.+ ......+..+..+++ |+.|++++|.+.+..+..+... ..++
T Consensus 164 ~~-------~~l~~l~~~~L~~L~L~~n--~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~ 234 (844)
T 3j0a_A 164 CE-------HELEPLQGKTLSFFSLAAN--SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234 (844)
T ss_dssp CS-------GGGHHHHHCSSCCCEECCS--BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS
T ss_pred CH-------HHcccccCCccceEECCCC--ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc
Confidence 66 677776 88999999983 333455555555544 9999999998877776655432 5677
Q ss_pred EEeeeccC---------CCccCCcccCCC--CCCcEEEcCccccccc-cccccccccccEEeecCCCCccccccccccCC
Q 044748 226 SLEIVDCQ---------NFKRLPDELGNL--KALQRLTVDRTAIREV-PESLGQLAILRRLKLTNCSGLESISSSIFKLK 293 (602)
Q Consensus 226 ~L~l~~~~---------~~~~~~~~~~~l--~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 293 (602)
.+.+..+. +.+.....+..+ ++|+.|++++|.+..+ +..+..+++|+.|++++|.+.+..+..+..++
T Consensus 235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 314 (844)
T 3j0a_A 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314 (844)
T ss_dssp EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS
T ss_pred ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC
Confidence 88776322 222222334443 7899999999998865 55688899999999999988877788889999
Q ss_pred CCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCccccc
Q 044748 294 SLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIRE 373 (602)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 373 (602)
+|++|++++|. ++ .+....+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.
T Consensus 315 ~L~~L~Ls~N~-l~-----------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 315 NLQVLNLSYNL-LG-----------------ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp SCCEEEEESCC-CS-----------------CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCCEEECCCCC-CC-----------------ccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 99999999863 22 4444445558999999999998777666778899999999999999987
Q ss_pred CCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCC
Q 044748 374 VPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKN 453 (602)
Q Consensus 374 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 453 (602)
++. +++|+.+++++|.+. .+|.. ...++.+++++|.+...-.. ..+..+++
T Consensus 377 i~~----~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~---------------------~~~~~l~~ 427 (844)
T 3j0a_A 377 IHF----IPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDIL---------------------YFLLRVPH 427 (844)
T ss_dssp CSS----CCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTH---------------------HHHTTCTT
T ss_pred ccC----CCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchh---------------------hhhhcCCc
Confidence 664 788999999999765 55542 56789999999876542111 03457899
Q ss_pred CCeEEeeccccccCCCh-hhhCCcccceEeecCcccccC------cccccCCCCCcEEEccCCcccccch-hhhcCCCCc
Q 044748 454 LTSLKIIDCQKFKRLPN-EIGNSKCLTVLIVKGTAIREV------PESLGQLSSLESLVLSNNKLERLPE-SFNQLSSLE 525 (602)
Q Consensus 454 L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~L~~n~l~~l------~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~ 525 (602)
|+.|++++|.+.+..+. .+..+++|++|++++|.++.+ +..+.++++|+.|+|++|+++.+|. .|..+++|+
T Consensus 428 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 507 (844)
T 3j0a_A 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507 (844)
T ss_dssp CCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCS
T ss_pred cceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhh
Confidence 99999999998764332 355689999999999999743 3457889999999999999977765 588999999
Q ss_pred eeecccccccCCchhhhcccccccccccceeecc------ccccccccchhhhhhc
Q 044748 526 YLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLRY------CLKLDSNELSEIVKGG 575 (602)
Q Consensus 526 ~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~~~------~~~L~~~~l~~~~~~~ 575 (602)
+|++++|+++.+|..... ++|+.||++.|-.. ...|+.+++++|++.-
T Consensus 508 ~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 508 GLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFIC 561 (844)
T ss_dssp EEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCC
T ss_pred eeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCEEEecCCCccc
Confidence 999999999997766433 69999999876543 3367778888876543
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.5e-43 Score=377.97 Aligned_cols=449 Identities=14% Similarity=0.140 Sum_probs=332.3
Q ss_pred CCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCcc------cc------CCCCccCccccceecccCCCCCCCCcccc
Q 044748 25 ENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKS------LT------SLPTGIHSKYLKILNLWGCSNLNNFPEIT 92 (602)
Q Consensus 25 ~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~------~l~~~~~~~~L~~L~l~~~~~~~~~~~~~ 92 (602)
.+++.|+|+++.+.+.+|..++.+++|++|++++|.. .+ .+|.. .+..|+ ++++++...+..+..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~-~~~~l~-l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE-QKQKMR-MHYQKTFVDYDPREDF 158 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHH-HHHHHH-THHHHHHTCCCGGGGS
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHH-HHHHHH-hhHHHhhhccCchhhH
Confidence 5799999999999999999999999999999999854 22 33332 256677 7787777666666655
Q ss_pred cc-cccchhccccccccCCccccCcccCceEecc--cccccccccccccccCCccEEEeeCCCCccc-------------
Q 044748 93 SC-HICIFELAEVGIKELPSSIECLSNLRELLIM--DCSELESISSSIFKLKSLKSIVISHCSNFKR------------- 156 (602)
Q Consensus 93 ~~-~~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~--~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------- 156 (602)
.. +..+..+++.. .+........++.+.+. .|.+.+ +|..+.++++|++|++++|.+.+.
T Consensus 159 ~~~~~~l~~~~l~~---~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 234 (636)
T 4eco_A 159 SDLIKDCINSDPQQ---KSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY 234 (636)
T ss_dssp CHHHHHHHHHCTTS---CCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred HHHHHHHhhcCccc---cccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccch
Confidence 53 23444444332 11111222334444443 344555 888888888999999998887764
Q ss_pred ----cccCCCCCCCCCc--CcccceeeecccCCCCCCccccccccCCCCCcccccccCC-CCc-ccccchhcc------c
Q 044748 157 ----FLEIPSCNTDGCT--GIERLASFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCP-NIE-SLPSSLCMF------K 222 (602)
Q Consensus 157 ----~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~------~ 222 (602)
+| ..+. .+++|++|++++ +...+.+|..+..+++|+.|++++|. +.+ .+|..+..+ +
T Consensus 235 ~~~~ip-------~~l~~~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~ 305 (636)
T 4eco_A 235 AQQYKT-------EDLKWDNLKDLTDVEVYN--CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305 (636)
T ss_dssp HHHHTT-------SCCCGGGCTTCCEEEEEC--CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG
T ss_pred hcccCc-------hhhhhcccCCCCEEEecC--CcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC
Confidence 66 6777 888888888888 45566788888888889999998887 666 788777765 8
Q ss_pred cccEEeeeccCCCccCCc--ccCCCCCCcEEEcCccccc-cccccccccccccEEeecCCCCccccccccccCCC-CcEE
Q 044748 223 SLTSLEIVDCQNFKRLPD--ELGNLKALQRLTVDRTAIR-EVPESLGQLAILRRLKLTNCSGLESISSSIFKLKS-LKSI 298 (602)
Q Consensus 223 ~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L 298 (602)
+|++|++++|.+. .+|. .+..+++|+.|++++|+++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |++|
T Consensus 306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 8999999988877 6777 7888899999999999888 888 7888889999999888655 77777888888 9999
Q ss_pred EeecCCCccccccCCCCCCCCCcchhcccccccc-CCCcccEEEEecCCCCccCCcccc-------CCCCccEEEecCcc
Q 044748 299 VISHCSNFKRFLEIPSGNTDGSTRIERLASSNLC-MFKSLKYLEIVDCQNFKRLPDELG-------NLKVLKRLTIDGTA 370 (602)
Q Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~n~ 370 (602)
++++|. ++ .+|..+.. .+++|++|++++|.+.+..|..+. .+++|++|++++|.
T Consensus 383 ~Ls~N~-l~-----------------~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~ 444 (636)
T 4eco_A 383 SFAHNK-LK-----------------YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444 (636)
T ss_dssp ECCSSC-CS-----------------SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC
T ss_pred EccCCc-Cc-----------------ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc
Confidence 998853 33 34433222 134789999999988888777777 77789999999999
Q ss_pred cccCCccc-cccccCcEEeccCCCCCCccCccccC--------CCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhh
Q 044748 371 IREVPKSL-SQLAILRWLKLTNCSGLGRISSSIFK--------LKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLAS 441 (602)
Q Consensus 371 i~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (602)
++.+|..+ ..+++|++|++++|.+. .+|..... +++|++|++++|.+. .+|.
T Consensus 445 l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~----------------- 505 (636)
T 4eco_A 445 ISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD----------------- 505 (636)
T ss_dssp CCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG-----------------
T ss_pred cCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccCh-----------------
Confidence 88888654 45788999999998776 55543322 227888888888766 4544
Q ss_pred hccccchh--ccCCCCeEEeeccccccCCChhhhCCcccceEeecC------ccc-ccCcccccCCCCCcEEEccCCccc
Q 044748 442 FKLRLDLC--MVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKG------TAI-REVPESLGQLSSLESLVLSNNKLE 512 (602)
Q Consensus 442 ~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~------n~l-~~l~~~~~~l~~L~~L~L~~n~l~ 512 (602)
.+. .+++|+.|++++|.+.+ +|..+..+++|++|++++ |.+ ..+|..+..+++|+.|++++|+++
T Consensus 506 -----~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 506 -----DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579 (636)
T ss_dssp -----GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred -----hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC
Confidence 443 67788888888887766 777777888888888844 444 367777888888888888888888
Q ss_pred ccchhhhcCCCCceeecccccccC
Q 044748 513 RLPESFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 513 ~l~~~l~~l~~L~~L~l~~N~l~~ 536 (602)
.+|..+. ++|++|++++|++.+
T Consensus 580 ~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 580 KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp BCCSCCC--TTCCEEECCSCTTCE
T ss_pred ccCHhHh--CcCCEEECcCCCCcc
Confidence 8887654 688888888887776
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-42 Score=369.26 Aligned_cols=494 Identities=18% Similarity=0.202 Sum_probs=391.4
Q ss_pred cEEecCCCCcCcCCcc-ccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCC-Ccc-CccccceecccC
Q 044748 5 KEIDLSGSESLTKLPD-LSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLP-TGI-HSKYLKILNLWG 81 (602)
Q Consensus 5 ~~L~l~~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~-~~~~L~~L~l~~ 81 (602)
++++-++.. ...+|. +. +++++|++++|.+.+..+..|..+++|++|++++|. +..++ ..+ .+++|++|++++
T Consensus 10 ~~~~c~~~~-l~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 10 ITYQCMELN-FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TEEECCSSC-CSSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEeCCCC-ccccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcC
Confidence 456666655 456666 53 679999999999877777899999999999999994 55554 445 899999999999
Q ss_pred CCCCCCCcccccccccchhccccc--cccCCc-cccCcccCceEecccccccc-cccccccccCCccEEEeeCCCCcccc
Q 044748 82 CSNLNNFPEITSCHICIFELAEVG--IKELPS-SIECLSNLRELLIMDCSELE-SISSSIFKLKSLKSIVISHCSNFKRF 157 (602)
Q Consensus 82 ~~~~~~~~~~~~~~~~L~~L~l~~--~~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~ 157 (602)
|.+.+..+..+..+++|++|++++ +..++. .++.+++|++|++++|.+.. .+|..+.++++|++|++++|.+....
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 987777778899999999999998 666654 58999999999999997766 46888999999999999999887766
Q ss_pred ccCCCCCCCCCcCcccc----eeeecccCCCCCCccccccccCCCCCcccccccCCCC-cccccchhccccccEEeeecc
Q 044748 158 LEIPSCNTDGCTGIERL----ASFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCPNI-ESLPSSLCMFKSLTSLEIVDC 232 (602)
Q Consensus 158 ~~~~~~~~~~~~~l~~L----~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~ 232 (602)
+ ..+..+++| +.|++++ +.+..++.......+|+.|++++|... ..++..+..+..++.+.+...
T Consensus 166 ~-------~~~~~l~~L~~~~~~L~l~~---n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~ 235 (570)
T 2z63_A 166 C-------TDLRVLHQMPLLNLSLDLSL---NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235 (570)
T ss_dssp G-------GGGHHHHTCTTCCCEEECTT---CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEE
T ss_pred H-------HHccchhccchhhhhcccCC---CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccc
Confidence 6 677888888 7889988 445555554444458999999987432 245556667777776665432
Q ss_pred CCC------ccCCcccCCCCC--CcEEEcCcc-ccc-cccccccccccccEEeecCCCCccccccccccCCCCcEEEeec
Q 044748 233 QNF------KRLPDELGNLKA--LQRLTVDRT-AIR-EVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISH 302 (602)
Q Consensus 233 ~~~------~~~~~~~~~l~~--L~~L~l~~n-~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 302 (602)
.+. ......+..+++ ++.++++++ .+. .++..+..+++|+.|++++|... .+|..+..+ +|++|++++
T Consensus 236 ~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~ 313 (570)
T 2z63_A 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVN 313 (570)
T ss_dssp ECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEES
T ss_pred cccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeecc
Confidence 221 111122333333 456666666 444 55677888999999999998654 678888888 999999999
Q ss_pred CCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccC---Ccccc
Q 044748 303 CSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREV---PKSLS 379 (602)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l---~~~~~ 379 (602)
|. +. .++. ..+++|++|++++|...+..+. ..+++|++|++++|.++.. +..+.
T Consensus 314 n~-~~-----------------~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~ 370 (570)
T 2z63_A 314 CK-FG-----------------QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDF 370 (570)
T ss_dssp CB-CS-----------------SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred Cc-cc-----------------ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccc
Confidence 63 22 3333 2378999999999987665544 7889999999999999855 56788
Q ss_pred ccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEe
Q 044748 380 QLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKI 459 (602)
Q Consensus 380 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l 459 (602)
.+++|++|++++|.+.+. +..+..+++|++|++++|.+....+.. .+..+++|++|++
T Consensus 371 ~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~---------------------~~~~l~~L~~L~l 428 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFS---------------------VFLSLRNLIYLDI 428 (570)
T ss_dssp TCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSC---------------------TTTTCTTCCEEEC
T ss_pred ccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchh---------------------hhhcCCCCCEEeC
Confidence 899999999999976654 444889999999999999876654420 5678899999999
Q ss_pred eccccccCCChhhhCCcccceEeecCcccc--cCcccccCCCCCcEEEccCCccccc-chhhhcCCCCceeecccccccC
Q 044748 460 IDCQKFKRLPNEIGNSKCLTVLIVKGTAIR--EVPESLGQLSSLESLVLSNNKLERL-PESFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 460 ~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~--~l~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~N~l~~ 536 (602)
++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|+++.+ |..+..+++|++|++++|++++
T Consensus 429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence 999999889999999999999999999997 6888999999999999999999766 6789999999999999999999
Q ss_pred Cch-hhhcccccccccccceeeccc
Q 044748 537 IPE-YLRSLPSKLTSLNLSIDLRYC 560 (602)
Q Consensus 537 ~~~-~l~~~~~~L~~L~l~~~~~~~ 560 (602)
+|. .+..++ +|+.|+++.|.+.|
T Consensus 509 ~~~~~~~~l~-~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 509 VPDGIFDRLT-SLQKIWLHTNPWDC 532 (570)
T ss_dssp CCTTTTTTCT-TCCEEECCSSCBCC
T ss_pred CCHHHhhccc-CCcEEEecCCcccC
Confidence 654 456666 99999999988765
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.5e-44 Score=386.81 Aligned_cols=449 Identities=16% Similarity=0.148 Sum_probs=358.7
Q ss_pred CCcEEecCCCCcCcCCcc-ccCCCCCcEEEcCCCcc------hh------cchhhhccCCCCcEEeccCCccccCCCCcc
Q 044748 3 NLKEIDLSGSESLTKLPD-LSRAENLKILRLDDCLS------LT------ETHSSIQYLNKLEFLTLEMCKSLTSLPTGI 69 (602)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~Ls~~~~------~~------~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~ 69 (602)
+++.|+|+++.+.+.+|. +.++++|++|+|++|.+ .+ .+|... +.+|+ ++++.+......|..+
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDF 158 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGS
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhH
Confidence 688999999998888887 99999999999999964 22 344333 55677 7787775555666655
Q ss_pred --CccccceecccCCCCCCCCcccccccccchhccccc----cccCCccccCcccCceEeccccccccc-----------
Q 044748 70 --HSKYLKILNLWGCSNLNNFPEITSCHICIFELAEVG----IKELPSSIECLSNLRELLIMDCSELES----------- 132 (602)
Q Consensus 70 --~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~----~~~l~~~~~~l~~L~~L~l~~~~~~~~----------- 132 (602)
.+..+..+++....+. ......++.+.+.. +..+|.+++++++|++|++++|.+.+.
T Consensus 159 ~~~~~~l~~~~l~~~~~~------~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 232 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIK------KSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS 232 (636)
T ss_dssp CHHHHHHHHHCTTSCCCC------CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred HHHHHHHhhcCccccccc------cccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCcccccccccccccccc
Confidence 4555555555543221 11223344444432 444899999999999999999987764
Q ss_pred ------cccccc--ccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecccCCCCCCc--cccccccCC-----
Q 044748 133 ------ISSSIF--KLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQ--SLPINMFSF----- 197 (602)
Q Consensus 133 ------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~l~~~~~~~----- 197 (602)
+|..+. ++++|++|++++|.+.+.+| ..+..+++|++|++++ +..+. .+|..+..+
T Consensus 233 ~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-------~~l~~l~~L~~L~Ls~--n~~l~~~~lp~~~~~L~~~~~ 303 (636)
T 4eco_A 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-------TFLKALPEMQLINVAC--NRGISGEQLKDDWQALADAPV 303 (636)
T ss_dssp HHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-------TTTTTCSSCCEEECTT--CTTSCHHHHHHHHHHHHHSGG
T ss_pred chhcccCchhhhhcccCCCCEEEecCCcCCccCh-------HHHhcCCCCCEEECcC--CCCCccccchHHHHhhhcccc
Confidence 888888 99999999999999988888 8899999999999998 33244 578777665
Q ss_pred -CCCcccccccCCCCccccc--chhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCcccccccccccccccc-ccE
Q 044748 198 -KSLPSIKIIHCPNIESLPS--SLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAI-LRR 273 (602)
Q Consensus 198 -~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~-L~~ 273 (602)
++|++|++++|.+. .+|. .+..+++|+.|++++|.+.+.+| .+..+++|+.|++++|+++.+|..+..+++ |+.
T Consensus 304 l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~ 381 (636)
T 4eco_A 304 GEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381 (636)
T ss_dssp GGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCE
T ss_pred CCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcE
Confidence 89999999999877 8888 89999999999999999888888 888999999999999999999998999999 999
Q ss_pred EeecCCCCccccccccccCC--CCcEEEeecCCCccccccCCCCCCCCCcchhccccccc------cCCCcccEEEEecC
Q 044748 274 LKLTNCSGLESISSSIFKLK--SLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNL------CMFKSLKYLEIVDC 345 (602)
Q Consensus 274 L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~L~~L~l~~~ 345 (602)
|++++|.+. .+|..+...+ +|++|++++|.... ..|..+. -.+++|++|++++|
T Consensus 382 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~l~~~~~~~~~~~~L~~L~Ls~N 443 (636)
T 4eco_A 382 LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS-----------------VDGKNFDPLDPTPFKGINVSSINLSNN 443 (636)
T ss_dssp EECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT-----------------TTTCSSCTTCSSCCCCCCEEEEECCSS
T ss_pred EEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC-----------------cchhhhcccccccccCCCCCEEECcCC
Confidence 999999866 7777776644 89999999864221 1222111 02679999999999
Q ss_pred CCCccCCccccCCCCccEEEecCcccccCCccccc--------cccCcEEeccCCCCCCccCcccc--CCCCCCeEEecc
Q 044748 346 QNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQ--------LAILRWLKLTNCSGLGRISSSIF--KLKSLKSIEISN 415 (602)
Q Consensus 346 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~ 415 (602)
.+.+..+..+..+++|++|++++|.++.+|..... +++|+.|++++|.+. .+|..+. .+++|++|++++
T Consensus 444 ~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~ 522 (636)
T 4eco_A 444 QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSY 522 (636)
T ss_dssp CCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCS
T ss_pred ccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCC
Confidence 87643334456789999999999999988865433 239999999999876 7888776 899999999999
Q ss_pred CCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEee------ccccccCCChhhhCCcccceEeecCcccc
Q 044748 416 CSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKII------DCQKFKRLPNEIGNSKCLTVLIVKGTAIR 489 (602)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~------~~~~~~~~~~~l~~~~~L~~L~L~~n~l~ 489 (602)
|.+.+ +|. .+..+++|+.|+++ +|.+.+.+|..+..+++|++|++++|.++
T Consensus 523 N~l~~-ip~----------------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 523 NSFSK-FPT----------------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579 (636)
T ss_dssp SCCSS-CCC----------------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred CCCCC-cCh----------------------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC
Confidence 98887 666 77889999999994 56778899999999999999999999999
Q ss_pred cCcccccCCCCCcEEEccCCcccccc
Q 044748 490 EVPESLGQLSSLESLVLSNNKLERLP 515 (602)
Q Consensus 490 ~l~~~~~~l~~L~~L~L~~n~l~~l~ 515 (602)
.+|..+. ++|+.|++++|++..+.
T Consensus 580 ~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 580 KVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred ccCHhHh--CcCCEEECcCCCCcccc
Confidence 9998766 79999999999986553
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.1e-42 Score=365.12 Aligned_cols=243 Identities=16% Similarity=0.081 Sum_probs=150.0
Q ss_pred CcEEecCCCCcCcCCcc-ccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCcc-CccccceecccC
Q 044748 4 LKEIDLSGSESLTKLPD-LSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGI-HSKYLKILNLWG 81 (602)
Q Consensus 4 L~~L~l~~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~~~L~~L~l~~ 81 (602)
..+.|.+++. ++.+|. +. ++|++|++++|.+.+..|..|+.+++|++|++++|......|..+ .+++|++|++++
T Consensus 7 ~~~c~~~~~~-l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 7 SGVCDGRSRS-FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp TSEEECTTSC-CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCc-cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence 3456777776 566676 53 789999999999877778889999999999999995444444556 889999999999
Q ss_pred CCCCCCCcccccccccchhccccc--cc--cCCccccCcccCceEeccccccccccc-ccccccCCccEEEeeCCCCccc
Q 044748 82 CSNLNNFPEITSCHICIFELAEVG--IK--ELPSSIECLSNLRELLIMDCSELESIS-SSIFKLKSLKSIVISHCSNFKR 156 (602)
Q Consensus 82 ~~~~~~~~~~~~~~~~L~~L~l~~--~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~ 156 (602)
|.+.+..+..+..+++|++|++++ +. ..|..++.+++|++|++++|...+.++ ..+..+++|++|++++|.+...
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 987766666677777777777766 33 334566667777777777765444444 3566667777777777766665
Q ss_pred cccCCCCCCCCCcCcccceeeecccCCCCCCccccccc-cCCCCCcccccccCCCCccc--c-cchhccccccEEeeecc
Q 044748 157 FLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPINM-FSFKSLPSIKIIHCPNIESL--P-SSLCMFKSLTSLEIVDC 232 (602)
Q Consensus 157 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~~--~-~~l~~~~~L~~L~l~~~ 232 (602)
.| ..+..+++|++|+++.+ ....++..+ ..+++|+.|++++|.+.+.. + .....+++|+.|++.+|
T Consensus 164 ~~-------~~l~~l~~L~~L~l~~n---~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 164 QS-------QSLKSIRDIHHLTLHLS---ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp CT-------TTTTTCSEEEEEEEECS---BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred Ch-------hhhhccccCceEecccC---cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence 55 56666666666666662 223333322 22455555555555444321 1 11123445555555554
Q ss_pred CCCccC----CcccCCCCCCcEEEcCccccc
Q 044748 233 QNFKRL----PDELGNLKALQRLTVDRTAIR 259 (602)
Q Consensus 233 ~~~~~~----~~~~~~l~~L~~L~l~~n~l~ 259 (602)
.+.+.. +..+..+++|+.+++++|.+.
T Consensus 234 ~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 234 VLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp EEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred ccchhHHHHHHHHhhhhcccccccccccccc
Confidence 443211 112233445555555555443
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-41 Score=358.58 Aligned_cols=452 Identities=17% Similarity=0.132 Sum_probs=277.1
Q ss_pred cEEecCCCCcCcCCcc-ccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCcc-CccccceecccCC
Q 044748 5 KEIDLSGSESLTKLPD-LSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGI-HSKYLKILNLWGC 82 (602)
Q Consensus 5 ~~L~l~~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~~~L~~L~l~~~ 82 (602)
++||+++|+ +..+|. +. ++|++|++++|.+.+..|..|..+++|++|++++|...+..|..+ .+++|++|++++|
T Consensus 3 ~~l~ls~n~-l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNG-LIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSC-CSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCC-ccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 689999998 456776 65 899999999999887778899999999999999995544446667 8999999999999
Q ss_pred CCCCCCcccccccccchhccccc--ccc--CCccccCcccCceEecccccccccccccccccCCc--cEEEeeCCCC--c
Q 044748 83 SNLNNFPEITSCHICIFELAEVG--IKE--LPSSIECLSNLRELLIMDCSELESISSSIFKLKSL--KSIVISHCSN--F 154 (602)
Q Consensus 83 ~~~~~~~~~~~~~~~L~~L~l~~--~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~ 154 (602)
.+. .+|.. .+++|++|++++ +.. +|..++.+++|++|++++|.+.+ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 754 45554 566666666666 332 45666666666666666665443 234445555 6666666655 3
Q ss_pred cccccCCCCCCCCCcCcccceeeecccCCCCCCccccc-cccCCCCCcccccccCCCCcccccchhccccccEEeeeccC
Q 044748 155 KRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPI-NMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQ 233 (602)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 233 (602)
...| ..+..+.. +.+++...++.....++. .+..+++|+.+++++|....... .
T Consensus 154 ~~~~-------~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----------------~ 208 (520)
T 2z7x_B 154 KEDP-------EGLQDFNT-ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS-----------------Y 208 (520)
T ss_dssp SCCT-------TTTTTCCE-EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-----------------H
T ss_pred cccc-------cccccccc-ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc-----------------e
Confidence 4434 34444332 222222211222222221 22334555555555543000000 0
Q ss_pred CCccCCcccCCCCCCcEEEcCcccccc-----ccccccccccccEEeecCCCCcccccccc-----ccCCCCcEEEeecC
Q 044748 234 NFKRLPDELGNLKALQRLTVDRTAIRE-----VPESLGQLAILRRLKLTNCSGLESISSSI-----FKLKSLKSIVISHC 303 (602)
Q Consensus 234 ~~~~~~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~ 303 (602)
+.+.++ .+..+++|+.|++++|.++. ++.. ...++|+.|++++|.+.+.+|..+ ..++.|+.++++++
T Consensus 209 ~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n 286 (520)
T 2z7x_B 209 FLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQL-VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286 (520)
T ss_dssp HHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHH-HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC
T ss_pred eecchh-hhccccchhhccccccccCHHHHHHHHHH-hhhCcccEEEeecccccCccccchhhcccccCceeEecccccc
Confidence 222222 33444445555554444431 1111 112355555555554444444444 45555555555553
Q ss_pred CCccccccCCCCCCCCCcchhccccc-ccc--CCCcccEEEEecCCCCccCCccccCCCCccEEEecCccccc-CCcccc
Q 044748 304 SNFKRFLEIPSGNTDGSTRIERLASS-NLC--MFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIRE-VPKSLS 379 (602)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~ 379 (602)
.. .+|.. ... ...+|++|++++|.+.+.. ....+++|++|++++|.++. +|..+.
T Consensus 287 ~~-------------------~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 345 (520)
T 2z7x_B 287 VF-------------------GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG 345 (520)
T ss_dssp CC-------------------CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred ce-------------------ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc
Confidence 21 11100 000 0134666666666543321 12456666677777766663 555666
Q ss_pred ccccCcEEeccCCCCCC--ccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeE
Q 044748 380 QLAILRWLKLTNCSGLG--RISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSL 457 (602)
Q Consensus 380 ~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L 457 (602)
.+++|++|++++|.+.+ .+|..+..+++|++|++++|.+...+|.- .+..+++|++|
T Consensus 346 ~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~---------------------~~~~l~~L~~L 404 (520)
T 2z7x_B 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG---------------------DCSWTKSLLSL 404 (520)
T ss_dssp CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC---------------------SCCCCTTCCEE
T ss_pred cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc---------------------hhccCccCCEE
Confidence 66777777777766554 44555667777777777777666544430 24456677777
Q ss_pred EeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccchh-hhcCCCCceeecccccccC
Q 044748 458 KIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPES-FNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 458 ~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~ 536 (602)
++++|.+.+..+..+. ++|++|++++|+++.+|..+..+++|+.|++++|+++.+|.. +..+++|++|++++|++++
T Consensus 405 ~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 405 NMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp ECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 7777776665555443 689999999999999998888999999999999999999886 8889999999999999988
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.9e-41 Score=355.53 Aligned_cols=480 Identities=17% Similarity=0.174 Sum_probs=367.0
Q ss_pred CCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCcc-CccccceecccCCCCCCCCcccccccccchhcc
Q 044748 24 AENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGI-HSKYLKILNLWGCSNLNNFPEITSCHICIFELA 102 (602)
Q Consensus 24 l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 102 (602)
|+...+.+.+++. .+.+|..+. ++|++|++++|......|..+ .+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 4 C~~~~~c~~~~~~-l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 4 CDASGVCDGRSRS-FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp ECTTSEEECTTSC-CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCceEECCCCc-cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 3444556777765 456776654 799999999995544456666 999999999999998877788899999999999
Q ss_pred ccc--cccCCc-cccCcccCceEecccccccc-cccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeee
Q 044748 103 EVG--IKELPS-SIECLSNLRELLIMDCSELE-SISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFK 178 (602)
Q Consensus 103 l~~--~~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 178 (602)
+++ +..++. .++.+++|++|++++|.+.+ ..+..+..+++|++|++++|.....++. ..+.++++|++|+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~------~~~~~l~~L~~L~ 154 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR------IDFAGLTSLNELE 154 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT------TTTTTCCEEEEEE
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH------hhhhcccccCeee
Confidence 999 666665 49999999999999997665 4567789999999999999986665541 5789999999999
Q ss_pred cccCCCCCCccccccccCCCCCcccccccCCCCcccccc-hhccccccEEeeeccCCCccC--C-cccCCCCCCcEEEcC
Q 044748 179 LKLEGCSSPQSLPINMFSFKSLPSIKIIHCPNIESLPSS-LCMFKSLTSLEIVDCQNFKRL--P-DELGNLKALQRLTVD 254 (602)
Q Consensus 179 l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~--~-~~~~~l~~L~~L~l~ 254 (602)
+++ +......|..+..+++|++|++++|... .++.. +..+++|+.|++++|.+.+.. + .....+++|+.|+++
T Consensus 155 L~~--n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 231 (549)
T 2z81_A 155 IKA--LSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231 (549)
T ss_dssp EEE--TTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEE
T ss_pred ccC--CcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecc
Confidence 998 3333457788888999999999998654 34443 356899999999999887642 1 224567899999999
Q ss_pred ccccc-----cccccccccccccEEeecCCCCccc------cccccccCCCCcEEEeecCCCccccccCCCCCCCCCcch
Q 044748 255 RTAIR-----EVPESLGQLAILRRLKLTNCSGLES------ISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRI 323 (602)
Q Consensus 255 ~n~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 323 (602)
+|.++ .++..+..+++|+.+++++|...+. ....+..+++++.+++.++..-. +...
T Consensus 232 ~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~----------- 299 (549)
T 2z81_A 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ-FYLF----------- 299 (549)
T ss_dssp SCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSC-GGGS-----------
T ss_pred ccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccch-hhhc-----------
Confidence 99887 3444556788999999999865441 11234567899999998853111 0000
Q ss_pred hccccccccCCCcccEEEEecCCCCccCCccc-cCCCCccEEEecCccccc-CC---ccccccccCcEEeccCCCCCCcc
Q 044748 324 ERLASSNLCMFKSLKYLEIVDCQNFKRLPDEL-GNLKVLKRLTIDGTAIRE-VP---KSLSQLAILRWLKLTNCSGLGRI 398 (602)
Q Consensus 324 ~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~n~i~~-l~---~~~~~l~~L~~L~l~~~~~~~~~ 398 (602)
..++. .....++|++|++++|.+ +.+|..+ ..+++|++|++++|.++. +| ..+..+++|++|++++|.+.+..
T Consensus 300 ~~l~~-~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 377 (549)
T 2z81_A 300 YDLST-VYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377 (549)
T ss_dssp CCCCH-HHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHH
T ss_pred ccchh-hhhhcccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccc
Confidence 01111 112257899999999885 5667655 578999999999999884 32 33677899999999999775432
Q ss_pred C--ccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCc
Q 044748 399 S--SSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSK 476 (602)
Q Consensus 399 ~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 476 (602)
+ ..+..+++|++|++++|.+. .+|. .+..+++|++|++++|.+.. ++..+ .+
T Consensus 378 ~~~~~~~~l~~L~~L~Ls~N~l~-~lp~----------------------~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~ 431 (549)
T 2z81_A 378 KTGEILLTLKNLTSLDISRNTFH-PMPD----------------------SCQWPEKMRFLNLSSTGIRV-VKTCI--PQ 431 (549)
T ss_dssp HHHHHGGGCTTCCEEECTTCCCC-CCCS----------------------CCCCCTTCCEEECTTSCCSC-CCTTS--CT
T ss_pred cchhhhhcCCCCCEEECCCCCCc-cCCh----------------------hhcccccccEEECCCCCccc-ccchh--cC
Confidence 2 45788999999999999766 4554 56678899999999988653 44333 36
Q ss_pred ccceEeecCcccccCcccccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCch-hhhcccccccccccce
Q 044748 477 CLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPE-YLRSLPSKLTSLNLSI 555 (602)
Q Consensus 477 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~-~l~~~~~~L~~L~l~~ 555 (602)
+|++|++++|+++.++ ..+++|+.|++++|+|+.+|. ...+++|++|++++|+++++|+ .+..++ +|+.|+++.
T Consensus 432 ~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l~~ 506 (549)
T 2z81_A 432 TLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLT-SLQKIWLHT 506 (549)
T ss_dssp TCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCT-TCCEEECCS
T ss_pred CceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCc-ccCEEEecC
Confidence 8999999999998775 578899999999999999987 4678999999999999999544 566666 999999998
Q ss_pred eeccc
Q 044748 556 DLRYC 560 (602)
Q Consensus 556 ~~~~~ 560 (602)
|.+.|
T Consensus 507 N~~~~ 511 (549)
T 2z81_A 507 NPWDC 511 (549)
T ss_dssp SCBCC
T ss_pred CCccC
Confidence 88654
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.5e-41 Score=366.85 Aligned_cols=438 Identities=15% Similarity=0.146 Sum_probs=315.3
Q ss_pred CCCcEEEcCCCcchhcchhhhccCCCCcEEec-cCCccccCCCCcc-Cc---------cccceec---------------
Q 044748 25 ENLKILRLDDCLSLTETHSSIQYLNKLEFLTL-EMCKSLTSLPTGI-HS---------KYLKILN--------------- 78 (602)
Q Consensus 25 ~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~l~~~~-~~---------~~L~~L~--------------- 78 (602)
.+++.|+|+++.+.+.+|+.++.+++|++|+| ++|...+..|... .. ..++...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57889999999988899999999999999999 6664433322221 00 0000000
Q ss_pred -----ccCCCCCCCCcccccccccchhccccc----cccCCccccCcccCceEecccccccc-----------------c
Q 044748 79 -----LWGCSNLNNFPEITSCHICIFELAEVG----IKELPSSIECLSNLRELLIMDCSELE-----------------S 132 (602)
Q Consensus 79 -----l~~~~~~~~~~~~~~~~~~L~~L~l~~----~~~l~~~~~~l~~L~~L~l~~~~~~~-----------------~ 132 (602)
+..+.. ..+........++.+.+.. +..+|..++++++|++|++++|.+.+ .
T Consensus 403 l~~~~l~~~~~--~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPE--MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTT--SCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCcc--ccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 000000 0111112233344444433 44489999999999999999998777 3
Q ss_pred cccccc--ccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecccCCCCCCc--cccccccCC-------CCCc
Q 044748 133 ISSSIF--KLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQ--SLPINMFSF-------KSLP 201 (602)
Q Consensus 133 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~l~~~~~~~-------~~L~ 201 (602)
+|..+. .+++|++|++++|.+.+.+| ..+..+++|++|++++| ..+. .+|..+..+ ++|+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-------~~l~~L~~L~~L~Ls~N--~~lsg~~iP~~i~~L~~~~~~l~~L~ 551 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLP-------DFLYDLPELQSLNIACN--RGISAAQLKADWTRLADDEDTGPKIQ 551 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCC-------GGGGGCSSCCEEECTTC--TTSCHHHHHHHHHHHHHCTTTTTTCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccCh-------HHHhCCCCCCEEECcCC--CCcccccchHHHHhhhhcccccCCcc
Confidence 888877 99999999999999888888 88999999999999983 3143 466655544 4999
Q ss_pred ccccccCCCCccccc--chhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCcccccccccccccccc-ccEEeecC
Q 044748 202 SIKIIHCPNIESLPS--SLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAI-LRRLKLTN 278 (602)
Q Consensus 202 ~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~-L~~L~l~~ 278 (602)
.|++++|.+. .+|. .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|+++.+|..+..+++ |+.|++++
T Consensus 552 ~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 552 IFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp EEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred EEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC
Confidence 9999999887 8888 8999999999999999887 777 889999999999999999999988999999 99999999
Q ss_pred CCCccccccccccCCC--CcEEEeecCCCccccccCCCCCCCCCcchhccccccc-cCCCcccEEEEecCCCCccCCccc
Q 044748 279 CSGLESISSSIFKLKS--LKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNL-CMFKSLKYLEIVDCQNFKRLPDEL 355 (602)
Q Consensus 279 ~~~~~~~~~~~~~l~~--L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~ 355 (602)
|.+. .+|..+...+. |+.|++++|......+ .++.... ...++|++|++++|.+. .+|..+
T Consensus 629 N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip--------------~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~ 692 (876)
T 4ecn_A 629 NKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR--------------NISCSMDDYKGINASTVTLSYNEIQ-KFPTEL 692 (876)
T ss_dssp SCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS--------------SCSSCTTTCCCCCEEEEECCSSCCC-SCCHHH
T ss_pred CCCC-cCchhhhccccCCCCEEECcCCcCCCccc--------------cchhhhccccCCCcCEEEccCCcCC-ccCHHH
Confidence 9866 77877766654 9999999974322111 1111111 11458999999999876 556544
Q ss_pred -cCCCCccEEEecCcccccCCccccc--------cccCcEEeccCCCCCCccCcccc--CCCCCCeEEeccCCCcccccc
Q 044748 356 -GNLKVLKRLTIDGTAIREVPKSLSQ--------LAILRWLKLTNCSGLGRISSSIF--KLKSLKSIEISNCSNFKRFLK 424 (602)
Q Consensus 356 -~~~~~L~~L~l~~n~i~~l~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~ 424 (602)
..+++|+.|++++|.++.+|..+.. +++|+.|++++|.+. .+|..+. .+++|+.|++++|.+.+ +|.
T Consensus 693 ~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~ 770 (876)
T 4ecn_A 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPT 770 (876)
T ss_dssp HHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCC
T ss_pred HccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cch
Confidence 5889999999999999988865443 349999999999776 7888876 89999999999988776 555
Q ss_pred CCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccc-cCcccccCCCCCcE
Q 044748 425 IPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIR-EVPESLGQLSSLES 503 (602)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~-~l~~~~~~l~~L~~ 503 (602)
.+..+++|+.|++++|+ ++++|.+. .+|..+..+++|+.
T Consensus 771 ----------------------~l~~L~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~ 810 (876)
T 4ecn_A 771 ----------------------QPLNSSQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQ 810 (876)
T ss_dssp ----------------------GGGGCTTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCE
T ss_pred ----------------------hhhcCCCCCEEECCCCC------------------CcccccccccChHHHhcCCCCCE
Confidence 56677888888887743 23334432 44555555555555
Q ss_pred EEccCCcccccchhhhcCCCCceeecccccccC
Q 044748 504 LVLSNNKLERLPESFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 504 L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~ 536 (602)
|+|++|+++.+|..+. ++|+.|++++|++..
T Consensus 811 L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 811 LQIGSNDIRKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp EECCSSCCCBCCSCCC--SSSCEEECCSCTTCE
T ss_pred EECCCCCCCccCHhhc--CCCCEEECCCCCCCc
Confidence 5555555555555432 455555555555554
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.8e-40 Score=348.01 Aligned_cols=448 Identities=15% Similarity=0.141 Sum_probs=315.5
Q ss_pred cEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCC-Ccc-CccccceecccCCCCCCCCcccccccccchhccccc
Q 044748 28 KILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLP-TGI-HSKYLKILNLWGCSNLNNFPEITSCHICIFELAEVG 105 (602)
Q Consensus 28 ~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 105 (602)
++|++++|.+. .+|..+. ++|++|++++| .+..++ ..+ .+++|++|++++|.+.+..|..+..+
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---------- 68 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN---------- 68 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTC----------
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcc----------
Confidence 57888888754 5776665 78888888888 444444 445 78888888888887655445555444
Q ss_pred cccCCccccCcccCceEecccccccccccccccccCCccEEEeeCCCCcc-ccccCCCCCCCCCcCcccceeeecccCCC
Q 044748 106 IKELPSSIECLSNLRELLIMDCSELESISSSIFKLKSLKSIVISHCSNFK-RFLEIPSCNTDGCTGIERLASFKLKLEGC 184 (602)
Q Consensus 106 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 184 (602)
++|++|++++|.+. .+|.. .+++|++|++++|.+.. .+| ..+..+++|++|+++++.
T Consensus 69 -----------~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p-------~~~~~l~~L~~L~L~~n~- 126 (520)
T 2z7x_B 69 -----------QELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPIC-------KEFGNMSQLKFLGLSTTH- 126 (520)
T ss_dssp -----------TTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCC-------GGGGGCTTCCEEEEEESS-
T ss_pred -----------cCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccch-------hhhccCCcceEEEecCcc-
Confidence 44555555554332 33333 44555555555554443 233 344455555555555421
Q ss_pred CCCccccccccCCCCC--cccccccCCC--Ccccccchhccc-cccEEeeeccCCCccCC-cccCCCCCCcEEEcCccc-
Q 044748 185 SSPQSLPINMFSFKSL--PSIKIIHCPN--IESLPSSLCMFK-SLTSLEIVDCQNFKRLP-DELGNLKALQRLTVDRTA- 257 (602)
Q Consensus 185 ~~~~~l~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~- 257 (602)
+.. ..+..+++| +.|++++|.+ .+..|..+..+. ....+++.+|.+.+.++ ..+..+++|+.+++++|.
T Consensus 127 --l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 202 (520)
T 2z7x_B 127 --LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202 (520)
T ss_dssp --CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred --cch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccc
Confidence 111 123334444 6666666655 555555554443 23355666776665444 346788999999999886
Q ss_pred ------cccccccccccccccEEeecCCCCccccccccc---cCCCCcEEEeecCCCccccccCCCCCCCCCcchhcccc
Q 044748 258 ------IREVPESLGQLAILRRLKLTNCSGLESISSSIF---KLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLAS 328 (602)
Q Consensus 258 ------l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 328 (602)
+......+..+++|+.|++++|...+.....+. ..++|++|++++|. ++ +.+|.
T Consensus 203 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~----------------~~~p~ 265 (520)
T 2z7x_B 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK-LQ----------------GQLDF 265 (520)
T ss_dssp TTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE-EE----------------SCCCC
T ss_pred ccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc-cc----------------Ccccc
Confidence 443333678899999999998866543222211 24699999999863 22 13444
Q ss_pred ccc----cCCCcccEEEEecCCCCccCC-ccccCC---CCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCc
Q 044748 329 SNL----CMFKSLKYLEIVDCQNFKRLP-DELGNL---KVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISS 400 (602)
Q Consensus 329 ~~~----~~~~~L~~L~l~~~~~~~~~~-~~~~~~---~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 400 (602)
..+ ..+++|+.+++++|.+ .+| .++..+ .+|++|++++|.+..++. ...+++|++|++++|.+.+.+|.
T Consensus 266 ~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~ 342 (520)
T 2z7x_B 266 RDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFE 342 (520)
T ss_dssp CCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTT
T ss_pred chhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhh
Confidence 331 4488999999999886 455 344433 679999999999886542 26789999999999999888898
Q ss_pred cccCCCCCCeEEeccCCCcc--ccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChh-hhCCcc
Q 044748 401 SIFKLKSLKSIEISNCSNFK--RFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNE-IGNSKC 477 (602)
Q Consensus 401 ~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~ 477 (602)
.+..+++|++|++++|.+.+ .+|. .+..+++|++|++++|.+.+.+|.. +..+++
T Consensus 343 ~~~~l~~L~~L~L~~N~l~~l~~~~~----------------------~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 343 NCGHLTELETLILQMNQLKELSKIAE----------------------MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp TCCCCSSCCEEECCSSCCCBHHHHHH----------------------HHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhccCCCCCEEEccCCccCccccchH----------------------HHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 99999999999999998775 3443 6788999999999999988856654 778899
Q ss_pred cceEeecCcccc-cCcccccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCchh-hhcccccccccccce
Q 044748 478 LTVLIVKGTAIR-EVPESLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPEY-LRSLPSKLTSLNLSI 555 (602)
Q Consensus 478 L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~-l~~~~~~L~~L~l~~ 555 (602)
|++|++++|+++ .+|..+. ++|+.|++++|+|+.+|..+..+++|++|++++|+++.+|.. +..++ +|+.|+++.
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~-~L~~L~l~~ 477 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT-SLQKIWLHT 477 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCS
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCC-cccEEECcC
Confidence 999999999996 5555443 799999999999999999888999999999999999999987 55665 999999999
Q ss_pred eeccc
Q 044748 556 DLRYC 560 (602)
Q Consensus 556 ~~~~~ 560 (602)
|.+.|
T Consensus 478 N~~~c 482 (520)
T 2z7x_B 478 NPWDC 482 (520)
T ss_dssp SCBCC
T ss_pred CCCcc
Confidence 98876
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.1e-40 Score=357.42 Aligned_cols=439 Identities=15% Similarity=0.110 Sum_probs=261.1
Q ss_pred CCCcEEeccCCccccCCCCcc-Cccccceecc-cCCCCCCCCcccccc----ccc--chhccc---------------cc
Q 044748 49 NKLEFLTLEMCKSLTSLPTGI-HSKYLKILNL-WGCSNLNNFPEITSC----HIC--IFELAE---------------VG 105 (602)
Q Consensus 49 ~~L~~L~l~~~~~~~~l~~~~-~~~~L~~L~l-~~~~~~~~~~~~~~~----~~~--L~~L~l---------------~~ 105 (602)
.+++.|+|+++...+.+|..+ .++.|++|+| ++|.+.+..+..... +.. ++.+.. ..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 578999999997777899888 9999999999 776544432211100 000 000000 00
Q ss_pred -----c----ccCCccccCcccCceEeccc--ccccccccccccccCCccEEEeeCCCCccc-----------------c
Q 044748 106 -----I----KELPSSIECLSNLRELLIMD--CSELESISSSIFKLKSLKSIVISHCSNFKR-----------------F 157 (602)
Q Consensus 106 -----~----~~l~~~~~~l~~L~~L~l~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~ 157 (602)
+ ...+........++.+.+.. |.+.+ +|..+.++++|+.|++++|.+.+. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0 00011112223344444443 54555 888899999999999999988762 4
Q ss_pred ccCCCCCCCCCc--CcccceeeecccCCCCCCccccccccCCCCCcccccccCC-CCc-ccccchhccc-------cccE
Q 044748 158 LEIPSCNTDGCT--GIERLASFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCP-NIE-SLPSSLCMFK-------SLTS 226 (602)
Q Consensus 158 ~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~~-------~L~~ 226 (602)
| ..+. .+++|++|++++ +.....+|..+..+++|+.|++++|. +.+ .+|..+..++ +|+.
T Consensus 482 P-------~~l~f~~L~~L~~L~Ls~--N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~ 552 (876)
T 4ecn_A 482 N-------EELSWSNLKDLTDVELYN--CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552 (876)
T ss_dssp T-------SCCCGGGCTTCCEEEEES--CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCE
T ss_pred C-------hhhhhccCCCCCEEECcC--CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccE
Confidence 4 4444 666666666666 33445566666666666666666665 444 4555554443 6666
Q ss_pred EeeeccCCCccCCc--ccCCCCCCcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCC-CcEEEeecC
Q 044748 227 LEIVDCQNFKRLPD--ELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKS-LKSIVISHC 303 (602)
Q Consensus 227 L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~ 303 (602)
|++++|.+. .+|. .+.++++|+.|++++|+++.+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|
T Consensus 553 L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 553 FYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp EECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred EEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence 666665555 4555 5556666666666666666555 4555666666666665544 45555555555 555555553
Q ss_pred CCccccccCCCCCCCCCcchhcccccccc-CCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCcccc--c
Q 044748 304 SNFKRFLEIPSGNTDGSTRIERLASSNLC-MFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLS--Q 380 (602)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~--~ 380 (602)
. ++ .+|..+.. ..++|++|++++|.+.+.+|... ..+. .
T Consensus 630 ~-L~-----------------~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~--------------------~~l~~~~ 671 (876)
T 4ecn_A 630 K-LK-----------------YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS--------------------CSMDDYK 671 (876)
T ss_dssp C-CC-----------------SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS--------------------SCTTTCC
T ss_pred C-CC-----------------cCchhhhccccCCCCEEECcCCcCCCccccch--------------------hhhcccc
Confidence 2 21 22211111 01235555555554443332111 1111 1
Q ss_pred cccCcEEeccCCCCCCccCccc-cCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEe
Q 044748 381 LAILRWLKLTNCSGLGRISSSI-FKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKI 459 (602)
Q Consensus 381 l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l 459 (602)
.++|+.|++++|.+. .+|..+ ..+++|++|++++|.+. .+|.. .+... ......+++|+.|++
T Consensus 672 ~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~---~~~~~-----------~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 672 GINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPEN---SLKPK-----------DGNYKNTYLLTTIDL 735 (876)
T ss_dssp CCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTT---SSSCT-----------TSCCTTGGGCCEEEC
T ss_pred CCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChH---Hhccc-----------cccccccCCccEEEC
Confidence 234555555555443 333322 24455555555555443 22220 00000 001234457888888
Q ss_pred eccccccCCChhhh--CCcccceEeecCcccccCcccccCCCCCcEEEccC------Ccc-cccchhhhcCCCCceeecc
Q 044748 460 IDCQKFKRLPNEIG--NSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSN------NKL-ERLPESFNQLSSLEYLQLF 530 (602)
Q Consensus 460 ~~~~~~~~~~~~l~--~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~------n~l-~~l~~~l~~l~~L~~L~l~ 530 (602)
++|.+. .+|..+. .+++|+.|++++|.++.+|..+..+++|+.|+|++ |++ +.+|..+..+++|+.|+++
T Consensus 736 s~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 736 RFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp CSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence 888766 6677776 88999999999999999998899999999999977 666 7889999999999999999
Q ss_pred cccccCCchhhhcccccccccccceeec
Q 044748 531 ENSLEGIPEYLRSLPSKLTSLNLSIDLR 558 (602)
Q Consensus 531 ~N~l~~~~~~l~~~~~~L~~L~l~~~~~ 558 (602)
+|++..+|..+. ++|+.||++.|..
T Consensus 815 ~N~L~~Ip~~l~---~~L~~LdLs~N~l 839 (876)
T 4ecn_A 815 SNDIRKVDEKLT---PQLYILDIADNPN 839 (876)
T ss_dssp SSCCCBCCSCCC---SSSCEEECCSCTT
T ss_pred CCCCCccCHhhc---CCCCEEECCCCCC
Confidence 999966998754 5899999887654
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.1e-38 Score=346.11 Aligned_cols=502 Identities=20% Similarity=0.147 Sum_probs=320.2
Q ss_pred CCcEEecCCCCcCcCCcc-ccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCc-c-Cccccceecc
Q 044748 3 NLKEIDLSGSESLTKLPD-LSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTG-I-HSKYLKILNL 79 (602)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~-~-~~~~L~~L~l 79 (602)
++++|||++|++.+..+. |.++++|++|+|++|.+.+..+++|+++++|++|+|++| .+..+|.. + .+++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEEC
Confidence 466677777764333333 677777777777776655555556666777777777766 44555543 3 6667777777
Q ss_pred cCCCCCCCCcccccccccchhccccc--cc--cCCccccCcccCceEecccccccccccccccccCCc----cEEEeeCC
Q 044748 80 WGCSNLNNFPEITSCHICIFELAEVG--IK--ELPSSIECLSNLRELLIMDCSELESISSSIFKLKSL----KSIVISHC 151 (602)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~L~~L~l~~--~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~ 151 (602)
++|.+.+..+..++++++|++|++++ +. ..|..++.+++|++|++++|.+.+..+..+..+.++ ..++++.+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 77665544444566666666666665 22 345555666666666666665554444444443332 24555555
Q ss_pred CCccccccCCCCCCCCCcCcccceeeecccCCCCCCccccccccCCCCCcccccccCCC------Ccccccchhcccccc
Q 044748 152 SNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCPN------IESLPSSLCMFKSLT 225 (602)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~------~~~~~~~l~~~~~L~ 225 (602)
.+....+ .......++.+++..+. ......+..+..+..++...+..+.. .......+.....+.
T Consensus 212 ~l~~i~~--------~~~~~~~~~~l~l~~n~-~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 212 PMNFIQP--------GAFKEIRLHKLTLRNNF-DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CCCEECT--------TTTTTCEEEEEEEESCC-SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred cccccCc--------ccccchhhhhhhhhccc-ccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence 4433222 22222334445544411 11111122223333333333322111 111122233344444
Q ss_pred EEeeeccCCC---ccCCcccCCCCCCcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEeec
Q 044748 226 SLEIVDCQNF---KRLPDELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISH 302 (602)
Q Consensus 226 ~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 302 (602)
...+..+... ......+....+++.+.+.++.+..++. +.....++.|++.+|....... ..++.|+.+++..
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~ 358 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTS 358 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEES
T ss_pred hhhhhhhhhcccccchhhhhhhhcccccccccccccccccc-cccchhhhhhhcccccccCcCc---ccchhhhhccccc
Confidence 4444433221 1223344556677777777777665544 4556677778777765433221 2456777777776
Q ss_pred CCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCc--cCCccccCCCCccEEEecCcccccCCccccc
Q 044748 303 CSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFK--RLPDELGNLKVLKRLTIDGTAIREVPKSLSQ 380 (602)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~ 380 (602)
+.... .. .. ..+++|+.+++++|.+.. ..+.......+++.+++..+.+..++..+..
T Consensus 359 n~~~~------------------~~-~~-~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~ 418 (635)
T 4g8a_A 359 NKGGN------------------AF-SE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG 418 (635)
T ss_dssp CCSCC------------------BC-CC-CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTT
T ss_pred ccCCC------------------Cc-cc-ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccc
Confidence 43211 11 11 127889999998887643 3444556778899999998888877777888
Q ss_pred cccCcEEeccCCCCCCccC-ccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEe
Q 044748 381 LAILRWLKLTNCSGLGRIS-SSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKI 459 (602)
Q Consensus 381 l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l 459 (602)
+++|+.+++..+......+ ..+..+++++.++++.|.+....+. .+..+++++.|++
T Consensus 419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~----------------------~~~~~~~L~~L~L 476 (635)
T 4g8a_A 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG----------------------IFNGLSSLEVLKM 476 (635)
T ss_dssp CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTT----------------------TTTTCTTCCEEEC
T ss_pred cccccchhhhhcccccccccccccccccccccccccccccccccc----------------------ccccchhhhhhhh
Confidence 8999999998876655443 4567888999999999887776665 6778899999999
Q ss_pred ecccccc-CCChhhhCCcccceEeecCcccccC-cccccCCCCCcEEEccCCcccccch-hhhcCCCCceeecccccccC
Q 044748 460 IDCQKFK-RLPNEIGNSKCLTVLIVKGTAIREV-PESLGQLSSLESLVLSNNKLERLPE-SFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 460 ~~~~~~~-~~~~~l~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~N~l~~ 536 (602)
++|.... ..|..+..+++|++|+|++|+++.+ |..|.++++|++|+|++|+|+.++. .|..+++|++|++++|+|+.
T Consensus 477 s~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 477 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred hhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 9987554 5677888999999999999999877 5678999999999999999987764 58899999999999999999
Q ss_pred -Cchhhhcccccccccccceeeccc
Q 044748 537 -IPEYLRSLPSKLTSLNLSIDLRYC 560 (602)
Q Consensus 537 -~~~~l~~~~~~L~~L~l~~~~~~~ 560 (602)
.|..+..++++|+.|+++.|++.|
T Consensus 557 ~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 557 SKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 666778888899999999999987
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.6e-38 Score=334.70 Aligned_cols=449 Identities=15% Similarity=0.098 Sum_probs=279.4
Q ss_pred CCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCC-Ccc-CccccceecccCCCCCCCCcccccccccchhccc
Q 044748 26 NLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLP-TGI-HSKYLKILNLWGCSNLNNFPEITSCHICIFELAE 103 (602)
Q Consensus 26 ~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 103 (602)
..++++++++.+. .+|..+. ++|++|++++| .+..++ ..+ .+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 32 ~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLT-HVPKDLP--PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCC-SCCTTSC--TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 3345555554432 2443332 45555555555 223332 233 4555555555555444444444555555555555
Q ss_pred cc--cccCCccccCcccCceEecccccccc-cccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccc--eeee
Q 044748 104 VG--IKELPSSIECLSNLRELLIMDCSELE-SISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERL--ASFK 178 (602)
Q Consensus 104 ~~--~~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L--~~L~ 178 (602)
++ +..+|.. .+++|++|++++|.+.+ .+|..+..+++|++|++++|.+.. ..+..+++| ++|+
T Consensus 108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~----------~~~~~l~~L~L~~L~ 175 (562)
T 3a79_B 108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ----------LDLLPVAHLHLSCIL 175 (562)
T ss_dssp TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT----------TTTGGGTTSCEEEEE
T ss_pred CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc----------CchhhhhhceeeEEE
Confidence 54 4455544 67777777777776554 344667777788888887776643 233444444 7777
Q ss_pred cccCCCCCCccccccccCCC-CCcccccccCCCCccccc-chhccccccEEeeeccCCC----ccCCcccCCCCCCcEEE
Q 044748 179 LKLEGCSSPQSLPINMFSFK-SLPSIKIIHCPNIESLPS-SLCMFKSLTSLEIVDCQNF----KRLPDELGNLKALQRLT 252 (602)
Q Consensus 179 l~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~ 252 (602)
++++........|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|... ......+..+++|+.++
T Consensus 176 L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255 (562)
T ss_dssp EEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred eecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence 77732211233344433322 111345566655554433 3456778888888876421 11123456677788887
Q ss_pred cCccccc-----cccccccccccccEEeecCCCCcccccccc-----ccCCCCcEEEeecCCCccccccCCCCCCCCCcc
Q 044748 253 VDRTAIR-----EVPESLGQLAILRRLKLTNCSGLESISSSI-----FKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTR 322 (602)
Q Consensus 253 l~~n~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 322 (602)
++++.+. .++... ..++|+.|++++|.+.+.+|..+ ..++.|+.+++..+..
T Consensus 256 L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~----------------- 317 (562)
T 3a79_B 256 LQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF----------------- 317 (562)
T ss_dssp EEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-----------------
T ss_pred ecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-----------------
Confidence 7776655 233322 23588888888887776777665 4444454445544211
Q ss_pred hhccccc----cccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCccccc-CCccccccccCcEEeccCCCCCC-
Q 044748 323 IERLASS----NLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIRE-VPKSLSQLAILRWLKLTNCSGLG- 396 (602)
Q Consensus 323 ~~~l~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~l~~L~~L~l~~~~~~~- 396 (602)
.+|.. .+. ..++++|++++|.+.... ....+++|++|++++|.++. +|..+..+++|++|++++|.+.+
T Consensus 318 --~~p~~~~~~~~~-~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 392 (562)
T 3a79_B 318 --LFSKEALYSVFA-EMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392 (562)
T ss_dssp --SSCHHHHHHHHH-TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT
T ss_pred --ecChhhhhhhhc-cCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc
Confidence 11110 111 256888888888764322 12577888888888888884 66777888888888888887654
Q ss_pred -ccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCC
Q 044748 397 -RISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNS 475 (602)
Q Consensus 397 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 475 (602)
.+|..+..+++|++|++++|.+...+|.. .+..+++|++|++++|.+.+..+..+.
T Consensus 393 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~---------------------~~~~l~~L~~L~l~~n~l~~~~~~~l~-- 449 (562)
T 3a79_B 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDR---------------------TCAWAESILVLNLSSNMLTGSVFRCLP-- 449 (562)
T ss_dssp THHHHTTTTCTTCCEEECTTSCCBSCCSSC---------------------CCCCCTTCCEEECCSSCCCGGGGSSCC--
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCccChh---------------------hhcCcccCCEEECCCCCCCcchhhhhc--
Confidence 34456778888888888888877655541 355678888888888887766555433
Q ss_pred cccceEeecCcccccCcccccCCCCCcEEEccCCcccccchh-hhcCCCCceeecccccccC
Q 044748 476 KCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPES-FNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 476 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~ 536 (602)
++|++|++++|+++.+|..+..+++|+.|++++|+++.+|.. +..+++|++|++++|++++
T Consensus 450 ~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 450 PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 688899999999888888777888899999999998888876 8888889999999998887
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.5e-37 Score=325.83 Aligned_cols=450 Identities=16% Similarity=0.109 Sum_probs=331.6
Q ss_pred CCCCcEEeccCCccccCCCCccCccccceecccCCCCCCCCcccccccccchhccccc--cccC-CccccCcccCceEec
Q 044748 48 LNKLEFLTLEMCKSLTSLPTGIHSKYLKILNLWGCSNLNNFPEITSCHICIFELAEVG--IKEL-PSSIECLSNLRELLI 124 (602)
Q Consensus 48 ~~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~l-~~~~~~l~~L~~L~l 124 (602)
+...+++++++| .+..+|..+. ++|++|++++|.+.+..+..+.++++|++|++++ +..+ |..+..+++|++|++
T Consensus 30 ~~~~~~l~ls~~-~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 30 NELESMVDYSNR-NLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp ---CCEEECTTS-CCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCcEEEcCCC-CCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 445689999999 6677887654 8999999999998777778888899999999988 5554 667888899999999
Q ss_pred ccccccccccccccccCCccEEEeeCCCCcc-ccccCCCCCCCCCcCcccceeeecccCCCCCCccccccccCCCCC--c
Q 044748 125 MDCSELESISSSIFKLKSLKSIVISHCSNFK-RFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPINMFSFKSL--P 201 (602)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L--~ 201 (602)
++|.+. .+|.. .+++|++|++++|++.. ..| ..+.++++|++|+++++. +.. ..+..++++ +
T Consensus 108 s~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p-------~~~~~l~~L~~L~L~~n~---l~~--~~~~~l~~L~L~ 172 (562)
T 3a79_B 108 SHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVC-------KEFGNLTKLTFLGLSAAK---FRQ--LDLLPVAHLHLS 172 (562)
T ss_dssp TTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCC-------GGGGGCTTCCEEEEECSB---CCT--TTTGGGTTSCEE
T ss_pred CCCcCC-ccCcc--ccccCCEEECCCCCccccCch-------HhhcccCcccEEecCCCc---ccc--Cchhhhhhceee
Confidence 988654 56665 78889999999887765 334 578888889999988833 322 233445555 8
Q ss_pred ccccccCCC--Ccccccchhccc-cccEEeeeccCCCccCCc-ccCCCCCCcEEEcCccc-----ccccccccccccccc
Q 044748 202 SIKIIHCPN--IESLPSSLCMFK-SLTSLEIVDCQNFKRLPD-ELGNLKALQRLTVDRTA-----IREVPESLGQLAILR 272 (602)
Q Consensus 202 ~L~l~~~~~--~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~-----l~~l~~~~~~l~~L~ 272 (602)
.|++++|.+ .+..|..+..+. ..-.+++.+|.+.+.++. .+..+++|+.+++++|+ +......+..+++++
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 888888877 666666665543 122456677766654443 35678888889888874 223333466778888
Q ss_pred EEeecCCCCccc----cccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccc----cCCCcccEEEEec
Q 044748 273 RLKLTNCSGLES----ISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNL----CMFKSLKYLEIVD 344 (602)
Q Consensus 273 ~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~L~~L~l~~ 344 (602)
.++++++..... ++.. ...++|++|++++|.. + +.+|...+ ..++.|+.+++..
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l-~----------------~~ip~~~~~~~~~~L~~L~~~~~~~ 314 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTI-T----------------ERIDREEFTYSETALKSLMIEHVKN 314 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEE-C----------------SCCCCCCCCCCSCSCCEEEEEEEEE
T ss_pred EEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEe-e----------------ccccchhhhcccccchheehhhccc
Confidence 888877654431 1111 2235889999988632 1 13333321 2355566666666
Q ss_pred CCCCccCC-cccc---CCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCcc
Q 044748 345 CQNFKRLP-DELG---NLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFK 420 (602)
Q Consensus 345 ~~~~~~~~-~~~~---~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (602)
+.+ .+| .++. ...++++|++++|.+..++. ...+++|++|++++|.+.+..|..+..+++|++|++++|.+.+
T Consensus 315 ~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 391 (562)
T 3a79_B 315 QVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391 (562)
T ss_dssp CCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred cee--ecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence 554 333 2222 22579999999998875542 2678999999999999988888899999999999999997765
Q ss_pred --ccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCCh-hhhCCcccceEeecCcccc-cCccccc
Q 044748 421 --RFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPN-EIGNSKCLTVLIVKGTAIR-EVPESLG 496 (602)
Q Consensus 421 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~L~~n~l~-~l~~~~~ 496 (602)
.+|. .+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|.++ .+|..+.
T Consensus 392 ~~~~~~----------------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 449 (562)
T 3a79_B 392 FFKVAL----------------------MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP 449 (562)
T ss_dssp TTHHHH----------------------TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC
T ss_pred cccchh----------------------hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc
Confidence 2233 567889999999999998885554 4778999999999999996 4444333
Q ss_pred CCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCchh-hhcccccccccccceeeccc
Q 044748 497 QLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPEY-LRSLPSKLTSLNLSIDLRYC 560 (602)
Q Consensus 497 ~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~-l~~~~~~L~~L~l~~~~~~~ 560 (602)
++|+.|++++|+|+.+|..+..+++|++|++++|+++.+|.. +..++ +|+.|+++.|.+.|
T Consensus 450 --~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~-~L~~L~l~~N~~~c 511 (562)
T 3a79_B 450 --PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLT-SLQYIWLHDNPWDC 511 (562)
T ss_dssp --TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCT-TCCCEECCSCCBCC
T ss_pred --CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCC-CCCEEEecCCCcCC
Confidence 699999999999999998877999999999999999999988 66666 99999999999876
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-34 Score=314.13 Aligned_cols=499 Identities=18% Similarity=0.173 Sum_probs=372.2
Q ss_pred CcCCcc-ccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCc-c-CccccceecccCCCCCCCCccc
Q 044748 15 LTKLPD-LSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTG-I-HSKYLKILNLWGCSNLNNFPEI 91 (602)
Q Consensus 15 ~~~~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~ 91 (602)
...+|. +. +++++|||++|.+....+.+|.++++|++|+|++| .+..++.. + .+++|++|+|++|.+.+..+..
T Consensus 43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 345554 53 47999999999977766778999999999999999 66666654 4 8999999999999876666678
Q ss_pred ccccccchhccccc--cccCCc-cccCcccCceEecccccccc-cccccccccCCccEEEeeCCCCccccccCCCCCCCC
Q 044748 92 TSCHICIFELAEVG--IKELPS-SIECLSNLRELLIMDCSELE-SISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDG 167 (602)
Q Consensus 92 ~~~~~~L~~L~l~~--~~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 167 (602)
|.++++|++|++++ +..+|. .|+++++|++|++++|.+.. .+|..+..+++|++|++++|++....+ ..
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~ 192 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-------TD 192 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-------GG
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc-------cc
Confidence 89999999999998 666664 58999999999999997655 457778889999999999998877666 56
Q ss_pred CcCcccce----eeecccCCCCCCccccccccCCCCCcccccccCCCCc-ccccchhccccccEEeeeccCCC------c
Q 044748 168 CTGIERLA----SFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCPNIE-SLPSSLCMFKSLTSLEIVDCQNF------K 236 (602)
Q Consensus 168 ~~~l~~L~----~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~------~ 236 (602)
+..+.+++ .++++. +.+..++........++.+.+.++.... ..+..+..+..++...+..+... .
T Consensus 193 l~~L~~l~~~~~~~~ls~---n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 269 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSL---NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 269 (635)
T ss_dssp GHHHHTCTTCCCEEECTT---CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred ccchhhhhhhhhhhhccc---CcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence 66655544 455665 5566666666666677788888775433 23344566677776666543321 1
Q ss_pred cCCcccCCCCCCcEEEcCccccc----cccccccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccC
Q 044748 237 RLPDELGNLKALQRLTVDRTAIR----EVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEI 312 (602)
Q Consensus 237 ~~~~~~~~l~~L~~L~l~~n~l~----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 312 (602)
.....+..+..+....+..+... .++..+....+++.+.+.++..... ..+.....++.|++.+|. +.
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~-~~----- 341 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCK-FG----- 341 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCE-ES-----
T ss_pred ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhccccc-cc-----
Confidence 22233445556666666554332 3444466678889998888754332 335567889999998852 11
Q ss_pred CCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccc---cCCccccccccCcEEec
Q 044748 313 PSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIR---EVPKSLSQLAILRWLKL 389 (602)
Q Consensus 313 ~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~---~l~~~~~~l~~L~~L~l 389 (602)
.++. ..++.++.+++..+...... ....+++|+.+++++|.+. ..+.....+.+|+.+++
T Consensus 342 ------------~~~~---~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~ 404 (635)
T 4g8a_A 342 ------------QFPT---LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL 404 (635)
T ss_dssp ------------SCCC---CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEEC
T ss_pred ------------CcCc---ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhc
Confidence 2222 23678999999988654332 3557899999999999886 34555667889999999
Q ss_pred cCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCC
Q 044748 390 TNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLP 469 (602)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 469 (602)
..+... ..+..+..+++|+.+++..++.....+.. .+..+.+++.++++.|.+....+
T Consensus 405 ~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~---------------------~~~~l~~l~~l~ls~n~l~~~~~ 462 (635)
T 4g8a_A 405 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS---------------------VFLSLRNLIYLDISHTHTRVAFN 462 (635)
T ss_dssp CSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSC---------------------TTTTCTTCCEEECTTSCCEECCT
T ss_pred cccccc-cccccccccccccchhhhhcccccccccc---------------------ccccccccccccccccccccccc
Confidence 998554 45556788999999999987665544331 56778899999999999988888
Q ss_pred hhhhCCcccceEeecCcccc--cCcccccCCCCCcEEEccCCccccc-chhhhcCCCCceeecccccccCCch-hhhccc
Q 044748 470 NEIGNSKCLTVLIVKGTAIR--EVPESLGQLSSLESLVLSNNKLERL-PESFNQLSSLEYLQLFENSLEGIPE-YLRSLP 545 (602)
Q Consensus 470 ~~l~~~~~L~~L~L~~n~l~--~l~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~N~l~~~~~-~l~~~~ 545 (602)
..+..++.+++|++++|.+. ..|..+..+++|+.|+|++|+|+.+ |..|..+++|++|+|++|+|++++. .+..++
T Consensus 463 ~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 542 (635)
T 4g8a_A 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 542 (635)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCT
T ss_pred cccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCC
Confidence 88999999999999999864 3677899999999999999999776 4579999999999999999999654 455665
Q ss_pred ccccccccceeec---------cc-cccccccchhhhhh
Q 044748 546 SKLTSLNLSIDLR---------YC-LKLDSNELSEIVKG 574 (602)
Q Consensus 546 ~~L~~L~l~~~~~---------~~-~~L~~~~l~~~~~~ 574 (602)
+|+.||++.|-. .+ .+|+.+++++|++.
T Consensus 543 -~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 543 -SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp -TCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred -CCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 899999886532 23 46778888877664
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.4e-34 Score=297.30 Aligned_cols=401 Identities=20% Similarity=0.169 Sum_probs=219.2
Q ss_pred CCCCcEEeccCCccccCCCCcc-CccccceecccCCCCCCCCcccccccccchhccccccccCCccccCcccCceEeccc
Q 044748 48 LNKLEFLTLEMCKSLTSLPTGI-HSKYLKILNLWGCSNLNNFPEITSCHICIFELAEVGIKELPSSIECLSNLRELLIMD 126 (602)
Q Consensus 48 ~~~L~~L~l~~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~ 126 (602)
.++|++|++++|. ++.+|..+ .+++|++|++++|.+.+.+|..++.+.+|+.+++.. ....++++|++++
T Consensus 10 ~~~L~~L~l~~n~-l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~--------c~~~~l~~L~l~~ 80 (454)
T 1jl5_A 10 NTFLQEPLRHSSN-LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD--------CLDRQAHELELNN 80 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHH--------HHHHTCSEEECTT
T ss_pred cccchhhhcccCc-hhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhh--------hhccCCCEEEecC
Confidence 4678888888874 47888777 788888888888877777787777777776666543 1124577788887
Q ss_pred ccccccccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecccCCCCCCccccccccCCCCCcccccc
Q 044748 127 CSELESISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPINMFSFKSLPSIKII 206 (602)
Q Consensus 127 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~ 206 (602)
|.+. .+|.. .++|++|++++|.+.. +| .. .++|++|+++++ .+..++.. .++|++|+++
T Consensus 81 ~~l~-~lp~~---~~~L~~L~l~~n~l~~-lp-------~~---~~~L~~L~l~~n---~l~~l~~~---~~~L~~L~L~ 139 (454)
T 1jl5_A 81 LGLS-SLPEL---PPHLESLVASCNSLTE-LP-------EL---PQSLKSLLVDNN---NLKALSDL---PPLLEYLGVS 139 (454)
T ss_dssp SCCS-CCCSC---CTTCSEEECCSSCCSS-CC-------CC---CTTCCEEECCSS---CCSCCCSC---CTTCCEEECC
T ss_pred Cccc-cCCCC---cCCCCEEEccCCcCCc-cc-------cc---cCCCcEEECCCC---ccCcccCC---CCCCCEEECc
Confidence 7543 34431 3578888888776654 44 22 267777777773 33333321 1577777777
Q ss_pred cCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccccccccccccEEeecCCCCccccc
Q 044748 207 HCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESIS 286 (602)
Q Consensus 207 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 286 (602)
+|.+.+ +| .+..+++|++|++++|.+.+ +|.. .++|+.|++++|+++.+| .+..+++|+.|++++|.+.+ +|
T Consensus 140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~ 211 (454)
T 1jl5_A 140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LP 211 (454)
T ss_dssp SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CC
T ss_pred CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CC
Confidence 776654 55 47777777777777776654 3433 247777777777777776 36777777777777776543 33
Q ss_pred cccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEe
Q 044748 287 SSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTI 366 (602)
Q Consensus 287 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 366 (602)
.. .++|++|++++| .++ .++. +..+++|++|++++|.+.+ +|. .+++|++|++
T Consensus 212 ~~---~~~L~~L~l~~n-~l~-----------------~lp~--~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l 264 (454)
T 1jl5_A 212 DL---PLSLESIVAGNN-ILE-----------------ELPE--LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNV 264 (454)
T ss_dssp CC---CTTCCEEECCSS-CCS-----------------SCCC--CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEEC
T ss_pred CC---cCcccEEECcCC-cCC-----------------cccc--cCCCCCCCEEECCCCcCCc-ccc---cccccCEEEC
Confidence 22 247777777775 222 3332 2336777777777776543 333 2367777777
Q ss_pred cCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhcccc
Q 044748 367 DGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRL 446 (602)
Q Consensus 367 ~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (602)
++|.++.+|.. +++|+.|++++|.+.+ ++. ..++|++|++++|.+.+ ++.
T Consensus 265 ~~N~l~~l~~~---~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~-i~~---------------------- 314 (454)
T 1jl5_A 265 RDNYLTDLPEL---PQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRS-LCD---------------------- 314 (454)
T ss_dssp CSSCCSCCCCC---CTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSE-ECC----------------------
T ss_pred CCCcccccCcc---cCcCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCc-ccC----------------------
Confidence 77777776643 3677777777776543 221 12567777777775543 111
Q ss_pred chhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccc---cchhhhcC--
Q 044748 447 DLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLER---LPESFNQL-- 521 (602)
Q Consensus 447 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~---l~~~l~~l-- 521 (602)
..++|+.|++++|.+.+ +|.. +++|++|++++|.++.+|. .+++|++|++++|+++. +|.++..+
T Consensus 315 ---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~ 384 (454)
T 1jl5_A 315 ---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRM 384 (454)
T ss_dssp ---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred ---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhh
Confidence 11367777777777654 4432 4677888888888877776 45778888888887744 55556555
Q ss_pred -----------CCCceeecccccccCCchhhhcccccccccccceee
Q 044748 522 -----------SSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDL 557 (602)
Q Consensus 522 -----------~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~ 557 (602)
++|+.|++++|+++++| .+|++++.|++..+.
T Consensus 385 n~~~~~i~~~~~~L~~L~ls~N~l~~~~----~iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 385 NSHLAEVPELPQNLKQLHVETNPLREFP----DIPESVEDLRMNSER 427 (454)
T ss_dssp CC---------------------------------------------
T ss_pred cccccccccccCcCCEEECCCCcCCccc----cchhhHhheeCcCcc
Confidence 67777777777777643 245566665554433
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.7e-35 Score=299.30 Aligned_cols=408 Identities=20% Similarity=0.170 Sum_probs=176.9
Q ss_pred CCCcEEecCCCCcCcCCcc-ccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCccCccccceeccc
Q 044748 2 VNLKEIDLSGSESLTKLPD-LSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGIHSKYLKILNLW 80 (602)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~ 80 (602)
++|++|++++|.+ +.+|. ++++++|++|++++|.+.+.+|..++.+++|+++++..|. ...+++|+++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~----------~~~l~~L~l~ 79 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL----------DRQAHELELN 79 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH----------HHTCSEEECT
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh----------ccCCCEEEec
Confidence 3455666666653 55555 6666666666666665555566666555555444444331 1334555555
Q ss_pred CCCCCCCCcccccccccchhccccccccCCccccCcccCceEecccccccccccccccccCCccEEEeeCCCCccccccC
Q 044748 81 GCSNLNNFPEITSCHICIFELAEVGIKELPSSIECLSNLRELLIMDCSELESISSSIFKLKSLKSIVISHCSNFKRFLEI 160 (602)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 160 (602)
+|.+. .+|.. .++|++|++++|.+.+ +|.. +++|++|++++|++.. ++
T Consensus 80 ~~~l~----------------------~lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~-- 127 (454)
T 1jl5_A 80 NLGLS----------------------SLPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LS-- 127 (454)
T ss_dssp TSCCS----------------------CCCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CC--
T ss_pred CCccc----------------------cCCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-cc--
Confidence 55422 22221 1345555555554333 3321 2455555555554432 11
Q ss_pred CCCCCCCCcCcccceeeecccCCCCCCccccccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCc
Q 044748 161 PSCNTDGCTGIERLASFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPD 240 (602)
Q Consensus 161 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 240 (602)
. + .++|++|++++ +.+..+| .+..+++|++|++++|.+.+ +|.. ..+|++|++++|.+.+ +|
T Consensus 128 -----~-~--~~~L~~L~L~~---n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~- 189 (454)
T 1jl5_A 128 -----D-L--PPLLEYLGVSN---NQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP- 189 (454)
T ss_dssp -----S-C--CTTCCEEECCS---SCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-
T ss_pred -----C-C--CCCCCEEECcC---CCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-
Confidence 0 0 13555555555 2333344 35555566666666654433 3332 2356666666665544 33
Q ss_pred ccCCCCCCcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCC
Q 044748 241 ELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGS 320 (602)
Q Consensus 241 ~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 320 (602)
.+..+++|+.|++++|+++.+|... ++|+.|++++|.+. .+| .+..+++|++|++++|. ++
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~-l~------------- 250 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNL-LK------------- 250 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSC-CS-------------
T ss_pred cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCc-CC-------------
Confidence 3566666666666666666555432 46666666666444 444 25566666666666642 22
Q ss_pred cchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCc
Q 044748 321 TRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISS 400 (602)
Q Consensus 321 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 400 (602)
.++. .+++|++|++++|.+.+ +|.. +++|++|++++|.++.++.. .++|+.|++++|.+.+ ++.
T Consensus 251 ----~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~-i~~ 314 (454)
T 1jl5_A 251 ----TLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRS-LCD 314 (454)
T ss_dssp ----SCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSE-ECC
T ss_pred ----cccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCc-ccC
Confidence 1221 13566666666665433 3332 25666666666666654421 2566666666665442 221
Q ss_pred cccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccce
Q 044748 401 SIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTV 480 (602)
Q Consensus 401 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 480 (602)
..++|++|++++|.+.+ +|. .+++|+.|++++|.+. .+|. .+++|++
T Consensus 315 ---~~~~L~~L~Ls~N~l~~-lp~-------------------------~~~~L~~L~L~~N~l~-~lp~---~l~~L~~ 361 (454)
T 1jl5_A 315 ---LPPSLEELNVSNNKLIE-LPA-------------------------LPPRLERLIASFNHLA-EVPE---LPQNLKQ 361 (454)
T ss_dssp ---CCTTCCEEECCSSCCSC-CCC-------------------------CCTTCCEEECCSSCCS-CCCC---CCTTCCE
T ss_pred ---CcCcCCEEECCCCcccc-ccc-------------------------cCCcCCEEECCCCccc-cccc---hhhhccE
Confidence 12466666666665543 332 1356666666666554 3443 3566777
Q ss_pred EeecCccccc---CcccccCC-------------CCCcEEEccCCcccccchhhhcCCCCceeecccccccC-Cchhh
Q 044748 481 LIVKGTAIRE---VPESLGQL-------------SSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEG-IPEYL 541 (602)
Q Consensus 481 L~L~~n~l~~---l~~~~~~l-------------~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~-~~~~l 541 (602)
|++++|.++. +|..+..+ ++|+.|++++|+++.+|.. .++++.|.+.+|.+.+ +|.+.
T Consensus 362 L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~i---P~sl~~L~~~~~~~~~~~~~~~ 436 (454)
T 1jl5_A 362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI---PESVEDLRMNSERVVDPYEFAH 436 (454)
T ss_dssp EECCSSCCSSCCCCCTTCCEEECCC-----------------------------------------------------
T ss_pred EECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccc---hhhHhheeCcCcccCCccccCH
Confidence 7777776654 34444444 7899999999999654321 2457788899998887 55443
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.4e-34 Score=295.83 Aligned_cols=365 Identities=15% Similarity=0.143 Sum_probs=221.7
Q ss_pred cccCCccccCcccCceEecccccccccccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecccCCCC
Q 044748 106 IKELPSSIECLSNLRELLIMDCSELESISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCS 185 (602)
Q Consensus 106 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 185 (602)
+..+|. + .++|++|++++|.+.+..+..+..+++|++|++++|.+...++. ..+.++++|++|++++ +
T Consensus 22 l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~------~~~~~l~~L~~L~Ls~---n 89 (455)
T 3v47_A 22 LHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN------NTFRGLSSLIILKLDY---N 89 (455)
T ss_dssp CSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECT------TTTTTCTTCCEEECTT---C
T ss_pred cccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECc------ccccccccCCEEeCCC---C
Confidence 455554 2 25677777777765555566667777777777777765544321 4566666666666665 2
Q ss_pred CCc-cccccccCCCCCcccccccCCCCcccccc--hhccccccEEeeeccCCCccCCcc-cCCCCCCcEEEcCccccccc
Q 044748 186 SPQ-SLPINMFSFKSLPSIKIIHCPNIESLPSS--LCMFKSLTSLEIVDCQNFKRLPDE-LGNLKALQRLTVDRTAIREV 261 (602)
Q Consensus 186 ~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l 261 (602)
.+. ..|..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..|.. +.++++|+.|++++|+++.+
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 222 22445555556666666555554433322 455555555555555555444433 45555555555555555433
Q ss_pred -ccccccc--ccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCccc
Q 044748 262 -PESLGQL--AILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLK 338 (602)
Q Consensus 262 -~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~ 338 (602)
+..+..+ ++++.+++++|......+..+. ........ .+++|+
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~---------------------------------~~~~~~~~-~~~~L~ 215 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG---------------------------------WEKCGNPF-KNTSIT 215 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT---------------------------------HHHHCCTT-TTCEEE
T ss_pred ChhhhhccccccccccccccCcccccchhhcc---------------------------------cccccccc-ccceee
Confidence 2223222 3445555554433321111100 00000011 134555
Q ss_pred EEEEecCCCCccCCccccC---CCCccEEEecCcccccC-----------Ccccc--ccccCcEEeccCCCCCCccCccc
Q 044748 339 YLEIVDCQNFKRLPDELGN---LKVLKRLTIDGTAIREV-----------PKSLS--QLAILRWLKLTNCSGLGRISSSI 402 (602)
Q Consensus 339 ~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~n~i~~l-----------~~~~~--~l~~L~~L~l~~~~~~~~~~~~~ 402 (602)
+|++++|.+.+..+..+.. .++++.|++++|..... +..+. ..++|+.+++++|.+.+..+..+
T Consensus 216 ~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 295 (455)
T 3v47_A 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF 295 (455)
T ss_dssp EEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT
T ss_pred eEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhc
Confidence 5666555554444433322 24555566555433211 01111 23678888888888877778788
Q ss_pred cCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEe
Q 044748 403 FKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLI 482 (602)
Q Consensus 403 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 482 (602)
..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~----------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDN----------------------AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTT----------------------TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCCCCCEEECCCCcccccChh----------------------HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 8888888888888887766665 667788888888888888777777888888899999
Q ss_pred ecCcccccC-cccccCCCCCcEEEccCCcccccchh-hhcCCCCceeecccccccC-Cc
Q 044748 483 VKGTAIREV-PESLGQLSSLESLVLSNNKLERLPES-FNQLSSLEYLQLFENSLEG-IP 538 (602)
Q Consensus 483 L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~-~~ 538 (602)
+++|.++.+ |..+..+++|++|++++|+++.+|.. +..+++|++|++++|++++ .|
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999988866 66788888999999999998777764 6788889999999998888 54
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.1e-33 Score=291.44 Aligned_cols=345 Identities=18% Similarity=0.188 Sum_probs=277.6
Q ss_pred ccceeeecccCCCCCCccc-cccccCCCCCcccccccCCCCccc-ccchhccccccEEeeeccCCCccCCcccCCCCCCc
Q 044748 172 ERLASFKLKLEGCSSPQSL-PINMFSFKSLPSIKIIHCPNIESL-PSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQ 249 (602)
Q Consensus 172 ~~L~~L~l~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 249 (602)
++|++|++++ +.+..+ |..+..+++|++|++++|.+.+.+ +..+..+++|++|++++|.+.+..|..+.++++|+
T Consensus 30 ~~l~~L~Ls~---n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 30 AHVNYVDLSL---NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp TTCCEEECCS---SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred CccCEEEecC---CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 7899999998 445544 677888999999999999887555 56788999999999999999888888999999999
Q ss_pred EEEcCcccccc-cccc--ccccccccEEeecCCCCccccccc-cccCCCCcEEEeecCCCccccccCCCCCCCCCcchhc
Q 044748 250 RLTVDRTAIRE-VPES--LGQLAILRRLKLTNCSGLESISSS-IFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIER 325 (602)
Q Consensus 250 ~L~l~~n~l~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (602)
+|++++|+++. ++.. +..+++|+.|++++|.+.+..+.. +..+++|++|++++|. ++ .
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~-----------------~ 168 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VK-----------------S 168 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BS-----------------C
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-cc-----------------c
Confidence 99999999984 4443 788999999999999887766665 7889999999999863 22 1
Q ss_pred cccccccC--CCcccEEEEecCCCCccCCcc--------ccCCCCccEEEecCcccc-cCCcccccc---ccCcEEeccC
Q 044748 326 LASSNLCM--FKSLKYLEIVDCQNFKRLPDE--------LGNLKVLKRLTIDGTAIR-EVPKSLSQL---AILRWLKLTN 391 (602)
Q Consensus 326 l~~~~~~~--~~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~n~i~-~l~~~~~~l---~~L~~L~l~~ 391 (602)
+....+.. ..+++.+++++|.+.+..+.+ +..+++|++|++++|.++ ..+..+... ++|+.+++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 21111111 268999999998876644333 235678999999999987 444444433 8899999998
Q ss_pred CCCCCccC----------cccc--CCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEe
Q 044748 392 CSGLGRIS----------SSIF--KLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKI 459 (602)
Q Consensus 392 ~~~~~~~~----------~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l 459 (602)
|...+... ..+. ..++|++|++++|.+.+..+. .+..+++|++|++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~L 306 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS----------------------VFSHFTDLEQLTL 306 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT----------------------TTTTCTTCCEEEC
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchh----------------------hcccCCCCCEEEC
Confidence 86543211 1111 237899999999998887776 7788999999999
Q ss_pred eccccccCCChhhhCCcccceEeecCcccccC-cccccCCCCCcEEEccCCccccc-chhhhcCCCCceeecccccccCC
Q 044748 460 IDCQKFKRLPNEIGNSKCLTVLIVKGTAIREV-PESLGQLSSLESLVLSNNKLERL-PESFNQLSSLEYLQLFENSLEGI 537 (602)
Q Consensus 460 ~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~N~l~~~ 537 (602)
++|.+.+..+..+..+++|++|++++|.++.+ |..+..+++|++|++++|+++.+ |..+..+++|++|++++|+++++
T Consensus 307 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC
Confidence 99999988888999999999999999999877 56789999999999999999766 66799999999999999999997
Q ss_pred chhh-hcccccccccccceeeccc
Q 044748 538 PEYL-RSLPSKLTSLNLSIDLRYC 560 (602)
Q Consensus 538 ~~~l-~~~~~~L~~L~l~~~~~~~ 560 (602)
|... ..++ +|+.|+++.|.+.|
T Consensus 387 ~~~~~~~l~-~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 387 PDGIFDRLT-SLQKIWLHTNPWDC 409 (455)
T ss_dssp CTTTTTTCT-TCCEEECCSSCBCC
T ss_pred CHhHhccCC-cccEEEccCCCccc
Confidence 7765 4555 99999999988754
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.1e-31 Score=275.18 Aligned_cols=350 Identities=19% Similarity=0.233 Sum_probs=209.3
Q ss_pred cccCceEecccccccccccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecccCCCCCCcccccccc
Q 044748 116 LSNLRELLIMDCSELESISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPINMF 195 (602)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~ 195 (602)
+++++.|++.++.+ ..++. +..+++|++|++++|.+... + . +..+++|++|++++ +.+..++. +.
T Consensus 45 l~~l~~L~l~~~~i-~~l~~-~~~l~~L~~L~Ls~n~l~~~-~-------~-~~~l~~L~~L~l~~---n~l~~~~~-~~ 109 (466)
T 1o6v_A 45 LDQVTTLQADRLGI-KSIDG-VEYLNNLTQINFSNNQLTDI-T-------P-LKNLTKLVDILMNN---NQIADITP-LA 109 (466)
T ss_dssp HHTCCEEECCSSCC-CCCTT-GGGCTTCCEEECCSSCCCCC-G-------G-GTTCTTCCEEECCS---SCCCCCGG-GT
T ss_pred hccccEEecCCCCC-ccCcc-hhhhcCCCEEECCCCccCCc-h-------h-hhccccCCEEECCC---CccccChh-hc
Confidence 34455555555432 22332 44455555555555543321 1 1 44455555555554 22233333 44
Q ss_pred CCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccccccccccccEEe
Q 044748 196 SFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAILRRLK 275 (602)
Q Consensus 196 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~ 275 (602)
.+++|++|++++|.+.+.. . +..+++|++|++++|.+.+. + .+..+++|+.|+++ +.+..++. +..+++|+.|+
T Consensus 110 ~l~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~ 183 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQITDID-P-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLD 183 (466)
T ss_dssp TCTTCCEEECCSSCCCCCG-G-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEE
T ss_pred CCCCCCEEECCCCCCCCCh-H-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCchh-hccCCCCCEEE
Confidence 4555555555555443322 1 45555666666655554432 1 25555566666654 33333332 45556666666
Q ss_pred ecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccc
Q 044748 276 LTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDEL 355 (602)
Q Consensus 276 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 355 (602)
+++|.+.. + ..+..+++|++|++++|. ++ .++. ...+++|++|++++|.+.+. ..+
T Consensus 184 l~~n~l~~-~-~~l~~l~~L~~L~l~~n~-l~-----------------~~~~--~~~l~~L~~L~l~~n~l~~~--~~l 239 (466)
T 1o6v_A 184 ISSNKVSD-I-SVLAKLTNLESLIATNNQ-IS-----------------DITP--LGILTNLDELSLNGNQLKDI--GTL 239 (466)
T ss_dssp CCSSCCCC-C-GGGGGCTTCSEEECCSSC-CC-----------------CCGG--GGGCTTCCEEECCSSCCCCC--GGG
T ss_pred CcCCcCCC-C-hhhccCCCCCEEEecCCc-cc-----------------cccc--ccccCCCCEEECCCCCcccc--hhh
Confidence 66654332 2 234555666666666542 11 1111 12256666666666664332 246
Q ss_pred cCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcc
Q 044748 356 GNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTR 435 (602)
Q Consensus 356 ~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 435 (602)
..+++|++|++++|.++.++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~------------- 303 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS------------- 303 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG-------------
T ss_pred hcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch-------------
Confidence 667777777777777776654 6667777777777776554332 667777888888777654321
Q ss_pred hhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccc
Q 044748 436 IERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLP 515 (602)
Q Consensus 436 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~ 515 (602)
.+..+++|+.|++++|.+.+..+ +..+++|++|++++|.++.++ .+..+++|+.|++++|+++.++
T Consensus 304 -----------~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 304 -----------PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp -----------GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCG
T ss_pred -----------hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccc
Confidence 24567788888888887766554 678889999999999998885 6888999999999999986665
Q ss_pred hhhhcCCCCceeecccccccCCchhh
Q 044748 516 ESFNQLSSLEYLQLFENSLEGIPEYL 541 (602)
Q Consensus 516 ~~l~~l~~L~~L~l~~N~l~~~~~~l 541 (602)
. +..+++|++|++++|+++++|...
T Consensus 370 ~-~~~l~~L~~L~l~~n~~~~~p~~~ 394 (466)
T 1o6v_A 370 P-LANLTRITQLGLNDQAWTNAPVNY 394 (466)
T ss_dssp G-GTTCTTCCEEECCCEEEECCCBCC
T ss_pred h-hhcCCCCCEEeccCCcccCCchhh
Confidence 5 788899999999999998877654
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.7e-31 Score=275.65 Aligned_cols=340 Identities=16% Similarity=0.200 Sum_probs=171.4
Q ss_pred CCCcEEecCCCCcCcCCccccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCCccccCCCCcc-Cccccceeccc
Q 044748 2 VNLKEIDLSGSESLTKLPDLSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMCKSLTSLPTGI-HSKYLKILNLW 80 (602)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~~~L~~L~l~ 80 (602)
+++++|+++++. +..++.+..+++|++|++++|.+.+. +. +..+++|++|++++| .+..++. + .+++|++|+++
T Consensus 46 ~~l~~L~l~~~~-i~~l~~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 46 DQVTTLQADRLG-IKSIDGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HTCCEEECCSSC-CCCCTTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred ccccEEecCCCC-CccCcchhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECC
Confidence 467777777776 45566677777788888877765443 33 777777788887777 4444444 4 77777777777
Q ss_pred CCCCCCCCcccccccccchhccccc--cccCCccccCcccCceEecccccccccccccccccCCccEEEeeCCCCccccc
Q 044748 81 GCSNLNNFPEITSCHICIFELAEVG--IKELPSSIECLSNLRELLIMDCSELESISSSIFKLKSLKSIVISHCSNFKRFL 158 (602)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~--~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 158 (602)
+|.+.+ ++. +..+++|++|++++ +..++ .+..+++|++|++.++ ... ++. +..+++|++|++++|.+...
T Consensus 121 ~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~-~~~-~~~-~~~l~~L~~L~l~~n~l~~~-- 192 (466)
T 1o6v_A 121 NNQITD-IDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ-VTD-LKP-LANLTTLERLDISSNKVSDI-- 192 (466)
T ss_dssp SSCCCC-CGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES-CCC-CGG-GTTCTTCCEEECCSSCCCCC--
T ss_pred CCCCCC-ChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc-ccC-chh-hccCCCCCEEECcCCcCCCC--
Confidence 776433 232 55555555555555 33333 2555555555555432 221 111 45555555555555543321
Q ss_pred cCCCCCCCCCcCcccceeeecccCCCCCCccccccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccC
Q 044748 159 EIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRL 238 (602)
Q Consensus 159 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 238 (602)
..+..+++|++|+++++ .+..++. +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..
T Consensus 193 -------~~l~~l~~L~~L~l~~n---~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~ 259 (466)
T 1o6v_A 193 -------SVLAKLTNLESLIATNN---QISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA 259 (466)
T ss_dssp -------GGGGGCTTCSEEECCSS---CCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred -------hhhccCCCCCEEEecCC---ccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch
Confidence 22444455555555541 2222211 33344555555555443321 12444445555555554443332
Q ss_pred CcccCCCCCCcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCC
Q 044748 239 PDELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTD 318 (602)
Q Consensus 239 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 318 (602)
+ +..+++|+.|++++|.++.++. +..+++|+.|++++|.+.+..+ +..++
T Consensus 260 ~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~------------------------- 309 (466)
T 1o6v_A 260 P--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLK------------------------- 309 (466)
T ss_dssp G--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCT-------------------------
T ss_pred h--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCC-------------------------
Confidence 2 4444455555555554444433 4444455555554444332211 33444
Q ss_pred CCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCcc
Q 044748 319 GSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRI 398 (602)
Q Consensus 319 ~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~ 398 (602)
+|++|++++|.+.+..+ +..+++|++|++++|.++.++ .+..+++|+.|++++|.+.+..
T Consensus 310 -----------------~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 310 -----------------NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp -----------------TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCG
T ss_pred -----------------CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccc
Confidence 45555555544433322 344455555555555554442 3444555555555555444333
Q ss_pred CccccCCCCCCeEEeccCCCc
Q 044748 399 SSSIFKLKSLKSIEISNCSNF 419 (602)
Q Consensus 399 ~~~~~~~~~L~~L~l~~~~~~ 419 (602)
| +..+++|++|++++|.+.
T Consensus 370 ~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 370 P--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp G--GTTCTTCCEEECCCEEEE
T ss_pred h--hhcCCCCCEEeccCCccc
Confidence 3 444555555555554433
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=2.6e-31 Score=277.08 Aligned_cols=310 Identities=18% Similarity=0.189 Sum_probs=245.2
Q ss_pred CCCccccccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCcccccccccc
Q 044748 185 SSPQSLPINMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPES 264 (602)
Q Consensus 185 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~ 264 (602)
..+..+|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.+.+..|..|.++++|+.|++++|+++.+|..
T Consensus 21 ~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 21 KRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp CCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred CCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc
Confidence 44555665443 5788888888877777777788888888888888888777778888888888888888888877754
Q ss_pred -ccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEe
Q 044748 265 -LGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIV 343 (602)
Q Consensus 265 -~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~ 343 (602)
+.++++|+.|++++|.+....+..+..+++|++|++++|. ++ .+....+..+++|++|+++
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~-----------------~~~~~~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LV-----------------YISHRAFSGLNSLEQLTLE 160 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CC-----------------EECTTSSTTCTTCCEEEEE
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cc-----------------eeChhhccCCCCCCEEECC
Confidence 6778888888888888777777778888888888888752 22 3444444557888899998
Q ss_pred cCCCCccCCccccCCCCccEEEecCcccccCC-ccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCcccc
Q 044748 344 DCQNFKRLPDELGNLKVLKRLTIDGTAIREVP-KSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRF 422 (602)
Q Consensus 344 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 422 (602)
+|.+.+..+..+..+++|+.|++++|.+..++ ..+..+++|+.|++++|...+.++.......+|++|++++|.+....
T Consensus 161 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 240 (477)
T 2id5_A 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240 (477)
T ss_dssp SCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC
T ss_pred CCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC
Confidence 88876655566888889999999998888554 46778889999999988888887777777778999999988766432
Q ss_pred ccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccC-cccccCCCCC
Q 044748 423 LKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREV-PESLGQLSSL 501 (602)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L 501 (602)
+. .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.+ |..+..+++|
T Consensus 241 ~~----------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (477)
T 2id5_A 241 YL----------------------AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298 (477)
T ss_dssp HH----------------------HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC
T ss_pred HH----------------------HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC
Confidence 22 567788899999999888877777788889999999999998866 5678888999
Q ss_pred cEEEccCCcccccch-hhhcCCCCceeecccccccC
Q 044748 502 ESLVLSNNKLERLPE-SFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 502 ~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~N~l~~ 536 (602)
+.|++++|+++.++. .|..+++|++|++++|++++
T Consensus 299 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 999999999987776 46788899999999999887
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=2.9e-31 Score=272.95 Aligned_cols=341 Identities=16% Similarity=0.123 Sum_probs=198.0
Q ss_pred ccCcccCceEecccccccccccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecccCCCCCCccccc
Q 044748 113 IECLSNLRELLIMDCSELESISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPI 192 (602)
Q Consensus 113 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~ 192 (602)
+..+++|++|++++|.+.+ ++ +..+++|++|++++|.+... .+..+++|++|++++ +.+..++
T Consensus 60 l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~----------~~~~l~~L~~L~L~~---N~l~~l~- 122 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL----------DVTPLTKLTYLNCDT---NKLTKLD- 122 (457)
T ss_dssp GGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC----------CCTTCTTCCEEECCS---SCCSCCC-
T ss_pred hcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee----------ecCCCCcCCEEECCC---CcCCeec-
Confidence 4555666666666664333 22 55566666666666654431 245556666666665 2333333
Q ss_pred cccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCcccccccccccccccccc
Q 044748 193 NMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAILR 272 (602)
Q Consensus 193 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~ 272 (602)
+..+++|++|++++|.+.+. + +..+++|+.|++++|...+.+ .+..+++|+.|++++|+++.+| +..+++|+
T Consensus 123 -~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~ 194 (457)
T 3bz5_A 123 -VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLN 194 (457)
T ss_dssp -CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCC
T ss_pred -CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCC
Confidence 45566666666666655442 2 556667777777776555444 3556677777777777777665 56667777
Q ss_pred EEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCC
Q 044748 273 RLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLP 352 (602)
Q Consensus 273 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~ 352 (602)
.|++++|.+.+. .+..+++|++|++++| .++ .+| ...+++|++|++++|.+.+..
T Consensus 195 ~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N-~l~-----------------~ip---~~~l~~L~~L~l~~N~l~~~~- 249 (457)
T 3bz5_A 195 RLNCDTNNITKL---DLNQNIQLTFLDCSSN-KLT-----------------EID---VTPLTQLTYFDCSVNPLTELD- 249 (457)
T ss_dssp EEECCSSCCSCC---CCTTCTTCSEEECCSS-CCS-----------------CCC---CTTCTTCSEEECCSSCCSCCC-
T ss_pred EEECcCCcCCee---ccccCCCCCEEECcCC-ccc-----------------ccC---ccccCCCCEEEeeCCcCCCcC-
Confidence 777777655443 2556677777777664 222 222 223667777777776654432
Q ss_pred ccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCC
Q 044748 353 DELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDG 432 (602)
Q Consensus 353 ~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 432 (602)
...+++|+.|++++| +|+.+++++|...+.+| +..+++|+.|++++|...+.+|.-
T Consensus 250 --~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~------- 305 (457)
T 3bz5_A 250 --VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ------- 305 (457)
T ss_dssp --CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT-------
T ss_pred --HHHCCCCCEEeccCC-------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC-------
Confidence 345666666666554 35566777777666666 356788888888888777666540
Q ss_pred CcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCccc
Q 044748 433 GTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLE 512 (602)
Q Consensus 433 ~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~ 512 (602)
...+..+ .+..+++|++|++++|.+.+. + +..+++|+.|++++|+++.+ +.|+.|++++|.+.
T Consensus 306 ~~~L~~L-------~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l-------~~L~~L~l~~n~l~ 368 (457)
T 3bz5_A 306 AAGITEL-------DLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF-------SSVGKIPALNNNFE 368 (457)
T ss_dssp TCCCSCC-------CCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC-------TTGGGSSGGGTSEE
T ss_pred CCcceEe-------chhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc-------cccccccccCCcEE
Confidence 0000000 233345555566655555442 2 45555566666666555543 23444455555553
Q ss_pred ccchhhhcCCCCceeecccccccC-Cchhhhcccccc
Q 044748 513 RLPESFNQLSSLEYLQLFENSLEG-IPEYLRSLPSKL 548 (602)
Q Consensus 513 ~l~~~l~~l~~L~~L~l~~N~l~~-~~~~l~~~~~~L 548 (602)
.. ..+..|+.+++++|++++ +|..+......+
T Consensus 369 g~----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~ 401 (457)
T 3bz5_A 369 AE----GQTITMPKETLTNNSLTIAVSPDLLDQFGNP 401 (457)
T ss_dssp EE----EEEEECCCBCCBTTBEEEECCTTCBCTTSCC
T ss_pred ec----ceeeecCccccccCcEEEEcChhHhcccCce
Confidence 32 234567888999999988 887665544333
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=1.7e-31 Score=270.91 Aligned_cols=285 Identities=17% Similarity=0.140 Sum_probs=139.8
Q ss_pred CCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCcccccccccc-ccccccccEEe
Q 044748 197 FKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPES-LGQLAILRRLK 275 (602)
Q Consensus 197 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~ 275 (602)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+++.+|.. +..+++|+.|+
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 45555555555544444444555555666666666555555555555666666666666666655544 35556666666
Q ss_pred ecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccc
Q 044748 276 LTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDEL 355 (602)
Q Consensus 276 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 355 (602)
+++|.+....+..+..+++|++|++++|. ++ .++ ...+++|+++++++|.+.+ +
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~-----------------~~~---~~~l~~L~~L~l~~n~l~~-----~ 201 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNR-LT-----------------HVD---LSLIPSLFHANVSYNLLST-----L 201 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSC-CS-----------------BCC---GGGCTTCSEEECCSSCCSE-----E
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCc-CC-----------------ccc---cccccccceeecccccccc-----c
Confidence 66655544444445555566666665532 11 111 1124555555555554321 2
Q ss_pred cCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcc
Q 044748 356 GNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTR 435 (602)
Q Consensus 356 ~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 435 (602)
...++|++|++++|.++.++.. ..++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|.
T Consensus 202 ~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~----------- 266 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH----------- 266 (390)
T ss_dssp ECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG-----------
T ss_pred CCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh-----------
Confidence 2234555556655555544322 234555555555544322 2344455555555555444433333
Q ss_pred hhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccc
Q 044748 436 IERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLP 515 (602)
Q Consensus 436 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~ 515 (602)
.+..+++|+.|++++|.+.+ ++..+..+++|++|++++|.++.+|..+..+++|+.|++++|+++.++
T Consensus 267 -----------~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 267 -----------PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp -----------GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred -----------HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC
Confidence 33344444444444443322 222233444555555555555555444444455555555555554443
Q ss_pred hhhhcCCCCceeecccccccC
Q 044748 516 ESFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 516 ~~l~~l~~L~~L~l~~N~l~~ 536 (602)
+..+++|++|++++|++++
T Consensus 335 --~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 335 --LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp --CCTTCCCSEEECCSSCEEH
T ss_pred --chhhccCCEEEcCCCCccc
Confidence 3344455555555555544
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=4.5e-31 Score=271.47 Aligned_cols=343 Identities=15% Similarity=0.122 Sum_probs=174.0
Q ss_pred cccCcccCceEecccccccccccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecccCCCCCCcccc
Q 044748 112 SIECLSNLRELLIMDCSELESISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLP 191 (602)
Q Consensus 112 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~ 191 (602)
.++++++|++|++++|.+.+ +| .+..+++|++|++++|.+... .+..+++|++|++++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~----------~~~~l~~L~~L~Ls~---------- 94 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL----------DLSQNTNLTYLACDS---------- 94 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC----------CCTTCTTCSEEECCS----------
T ss_pred ChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE----------ccccCCCCCEEECcC----------
Confidence 45556666666666664433 33 456666666666666654331 134445555555555
Q ss_pred ccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccccccccccc
Q 044748 192 INMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAIL 271 (602)
Q Consensus 192 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L 271 (602)
|.+.+. + +..+++|++|++++|.+.+. + +..+++|+.|++++|+++.++ +..+++|
T Consensus 95 ----------------N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L 150 (457)
T 3bz5_A 95 ----------------NKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEID--VSHNTQL 150 (457)
T ss_dssp ----------------SCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCC--CTTCTTC
T ss_pred ----------------CCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceec--cccCCcC
Confidence 433321 1 33444555555555444332 1 444555555555555555442 3445555
Q ss_pred cEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccC
Q 044748 272 RRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRL 351 (602)
Q Consensus 272 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~ 351 (602)
+.|++++|...+.+ .+..+++|++|++++| .++ .++ ...+++|++|++++|.+.+.
T Consensus 151 ~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~-----------------~l~---l~~l~~L~~L~l~~N~l~~~- 206 (457)
T 3bz5_A 151 TELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KIT-----------------ELD---VSQNKLLNRLNCDTNNITKL- 206 (457)
T ss_dssp CEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCC-----------------CCC---CTTCTTCCEEECCSSCCSCC-
T ss_pred CEEECCCCCccccc--ccccCCcCCEEECCCC-ccc-----------------eec---cccCCCCCEEECcCCcCCee-
Confidence 55555555433333 2344555555555553 121 122 12245555555555554332
Q ss_pred CccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCC----------CeEEeccCCCccc
Q 044748 352 PDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSL----------KSIEISNCSNFKR 421 (602)
Q Consensus 352 ~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L----------~~L~l~~~~~~~~ 421 (602)
.+..+++|++|++++|+++.+| +..+++|+.|++++|.+.+.. +..+++| +.+++++|...+.
T Consensus 207 --~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~ 279 (457)
T 3bz5_A 207 --DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIY 279 (457)
T ss_dssp --CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred --ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEECCCCccCCc
Confidence 2455555555666555555554 445555566666555544322 2233444 4455555544443
Q ss_pred cccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCC
Q 044748 422 FLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSL 501 (602)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L 501 (602)
+| ...+++|+.|++++|...+.+|. ..++|+.|++ ..+++|
T Consensus 280 ~~------------------------~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l------------~~~~~L 320 (457)
T 3bz5_A 280 FQ------------------------AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDL------------SQNPKL 320 (457)
T ss_dssp EE------------------------CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCC------------TTCTTC
T ss_pred cc------------------------ccccccCCEEECCCCcccceecc---CCCcceEech------------hhcccC
Confidence 33 23567777788877776555443 1223333332 333567
Q ss_pred cEEEccCCcccccchhhhcCCCCceeecccccccCCchhhhcccccccccccceee----ccccccccccchhhhhhccc
Q 044748 502 ESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDL----RYCLKLDSNELSEIVKGGWM 577 (602)
Q Consensus 502 ~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~----~~~~~L~~~~l~~~~~~~~~ 577 (602)
+.|++++|+++.++ +..+++|+.|++++|++++++ .|..|+++.|- ..+..|..+++++|...+-.
T Consensus 321 ~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~--------~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~i 390 (457)
T 3bz5_A 321 VYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS--------SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAV 390 (457)
T ss_dssp CEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCT--------TGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEEC
T ss_pred CEEECCCCcccccc--cccCCcCcEEECCCCCCCCcc--------ccccccccCCcEEecceeeecCccccccCcEEEEc
Confidence 77777777776653 666777777777777776542 33444433321 13344555566665555544
Q ss_pred ccc
Q 044748 578 KQS 580 (602)
Q Consensus 578 ~~~ 580 (602)
|..
T Consensus 391 p~~ 393 (457)
T 3bz5_A 391 SPD 393 (457)
T ss_dssp CTT
T ss_pred Chh
Confidence 443
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=270.98 Aligned_cols=317 Identities=21% Similarity=0.208 Sum_probs=266.7
Q ss_pred ccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccc-cccccccccccEEeecCCC
Q 044748 202 SIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREV-PESLGQLAILRRLKLTNCS 280 (602)
Q Consensus 202 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~ 280 (602)
.++.+++ ....+|..+ .+.++.|++++|.+.+..+..|.++++|+.|++++|.++.+ |..+.++++|+.|++++|.
T Consensus 15 ~v~c~~~-~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRK-RFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSC-CCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCC-CcCcCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 4455444 334566544 36899999999999888888999999999999999999977 6678999999999999998
Q ss_pred CccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCC
Q 044748 281 GLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKV 360 (602)
Q Consensus 281 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 360 (602)
+....+..+..+++|++|++++|. ++ .++...+..+++|++|++++|.+.+..+..+..+++
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~-i~-----------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 153 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENK-IV-----------------ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSC-CC-----------------EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT
T ss_pred CCccCcccccCCCCCCEEECCCCc-cc-----------------cCChhHccccccCCEEECCCCccceeChhhccCCCC
Confidence 766555667899999999999863 33 444444556899999999999988887888999999
Q ss_pred ccEEEecCcccccCCc-cccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhh
Q 044748 361 LKRLTIDGTAIREVPK-SLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERL 439 (602)
Q Consensus 361 L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l 439 (602)
|++|++++|.++.++. .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.....++.
T Consensus 154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------------- 218 (477)
T 2id5_A 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP--------------- 218 (477)
T ss_dssp CCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT---------------
T ss_pred CCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc---------------
Confidence 9999999999998774 578899999999999988777777889999999999999988877765
Q ss_pred hhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCc-ccccCCCCCcEEEccCCccccc-chh
Q 044748 440 ASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVP-ESLGQLSSLESLVLSNNKLERL-PES 517 (602)
Q Consensus 440 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~l-~~~ 517 (602)
......+|++|++++|.+....+..+..+++|++|++++|.++.++ ..+..+++|+.|++++|+++.+ |..
T Consensus 219 -------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (477)
T 2id5_A 219 -------NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291 (477)
T ss_dssp -------TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred -------ccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHH
Confidence 3444569999999999887665567899999999999999999776 4688999999999999999666 567
Q ss_pred hhcCCCCceeecccccccCCchhhhcccccccccccceeecccc
Q 044748 518 FNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLRYCL 561 (602)
Q Consensus 518 l~~l~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~~~~~ 561 (602)
|..+++|++|++++|+++.+|...+.-.++|+.|+++.|.+.|.
T Consensus 292 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp BTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred hcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 99999999999999999997776544444999999999988763
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.1e-30 Score=262.78 Aligned_cols=313 Identities=16% Similarity=0.111 Sum_probs=260.9
Q ss_pred CCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccc-cccccccccEEe
Q 044748 197 FKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPE-SLGQLAILRRLK 275 (602)
Q Consensus 197 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~ 275 (602)
+++++.++++++.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|+.|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 5788899998886555444557889999999999999888777789999999999999999997754 478999999999
Q ss_pred ecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccc
Q 044748 276 LTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDEL 355 (602)
Q Consensus 276 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 355 (602)
+++|.+....+..+..+++|++|++++|. ++ .++...+..+++|++|++++|.+.+. .+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~-----------------~~~~~~~~~l~~L~~L~l~~n~l~~~---~~ 182 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNN-LE-----------------RIEDDTFQATTSLQNLQLSSNRLTHV---DL 182 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC-----------------BCCTTTTSSCTTCCEEECCSSCCSBC---CG
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCc-cC-----------------ccChhhccCCCCCCEEECCCCcCCcc---cc
Confidence 99997664444446889999999999863 33 44444455589999999999987654 36
Q ss_pred cCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcc
Q 044748 356 GNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTR 435 (602)
Q Consensus 356 ~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 435 (602)
..+++|+.+++++|.++.++ ..++|+.|++++|.+... +. ..+++|++|++++|.+... .
T Consensus 183 ~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~----------- 242 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--A----------- 242 (390)
T ss_dssp GGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--G-----------
T ss_pred ccccccceeecccccccccC----CCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--H-----------
Confidence 67889999999999887543 346899999999976543 33 2358999999999976643 1
Q ss_pred hhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccc
Q 044748 436 IERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLP 515 (602)
Q Consensus 436 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~ 515 (602)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|+++.+|..+..+++|+.|++++|+++.+|
T Consensus 243 -----------~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~ 311 (390)
T 3o6n_A 243 -----------WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE 311 (390)
T ss_dssp -----------GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCG
T ss_pred -----------HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecC
Confidence 567889999999999999888899999999999999999999999888888999999999999999999
Q ss_pred hhhhcCCCCceeecccccccCCchhhhcccccccccccceeeccccccc
Q 044748 516 ESFNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLRYCLKLD 564 (602)
Q Consensus 516 ~~l~~l~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~~~~~~L~ 564 (602)
..+..+++|++|++++|+++.++ +..++ +|+.|++++|.+.|..+.
T Consensus 312 ~~~~~l~~L~~L~L~~N~i~~~~--~~~~~-~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 312 RNQPQFDRLENLYLDHNSIVTLK--LSTHH-TLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp GGHHHHTTCSEEECCSSCCCCCC--CCTTC-CCSEEECCSSCEEHHHHH
T ss_pred ccccccCcCCEEECCCCccceeC--chhhc-cCCEEEcCCCCccchhHH
Confidence 88999999999999999999875 44555 899999999988885543
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.5e-29 Score=252.45 Aligned_cols=100 Identities=32% Similarity=0.354 Sum_probs=48.5
Q ss_pred cCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCccccc-chhhhcCCCCceeec
Q 044748 451 VKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERL-PESFNQLSSLEYLQL 529 (602)
Q Consensus 451 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l 529 (602)
+++|++|++++|.+.+. ..+..+++|++|++++|.++.++ .+..+++|+.|++++|+++.. +..+..+++|++|++
T Consensus 242 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred CCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence 34444444444443321 23445555555555555555553 345555555555555555322 234555555555555
Q ss_pred ccccccCCchhhhcccccccccccce
Q 044748 530 FENSLEGIPEYLRSLPSKLTSLNLSI 555 (602)
Q Consensus 530 ~~N~l~~~~~~l~~~~~~L~~L~l~~ 555 (602)
++|++++++. +..++ +|+.|+++.
T Consensus 319 ~~n~l~~~~~-~~~l~-~L~~L~l~~ 342 (347)
T 4fmz_A 319 SQNHITDIRP-LASLS-KMDSADFAN 342 (347)
T ss_dssp CSSSCCCCGG-GGGCT-TCSEESSSC
T ss_pred cCCccccccC-hhhhh-ccceeehhh
Confidence 5555555333 33333 444444443
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.9e-30 Score=275.98 Aligned_cols=286 Identities=17% Similarity=0.148 Sum_probs=170.6
Q ss_pred CCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCcccccccccc-ccccccccEE
Q 044748 196 SFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPES-LGQLAILRRL 274 (602)
Q Consensus 196 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L 274 (602)
.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|.++++|+.|++++|.++.+|.. +..+++|+.|
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 355555555555555544444555666666666666665555555566666666666666666665544 3556666666
Q ss_pred eecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCcc
Q 044748 275 KLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDE 354 (602)
Q Consensus 275 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 354 (602)
++++|.+.+..+..+..+++|++|++++|. ++ .++ ...+++|+.|++++|.+.+
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~-----------------~~~---~~~l~~L~~L~l~~n~l~~----- 206 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNR-LT-----------------HVD---LSLIPSLFHANVSYNLLST----- 206 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CS-----------------BCC---GGGCTTCSEEECCSSCCSE-----
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCC-CC-----------------CcC---hhhhhhhhhhhcccCcccc-----
Confidence 666665555555556666666666666542 11 111 1225566666666655422
Q ss_pred ccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCc
Q 044748 355 LGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGT 434 (602)
Q Consensus 355 ~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 434 (602)
+...++|++|++++|.++.++..+ .++|+.|++++|.+.+ +..+..+++|++|++++|.+.+..|.
T Consensus 207 l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~---------- 272 (597)
T 3oja_B 207 LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH---------- 272 (597)
T ss_dssp EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG----------
T ss_pred ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH----------
Confidence 233445666677666666554322 2566666666665544 24455666666666666665555544
Q ss_pred chhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCccccc
Q 044748 435 RIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERL 514 (602)
Q Consensus 435 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l 514 (602)
.+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+
T Consensus 273 ------------~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 273 ------------PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp ------------GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred ------------HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc
Confidence 55566666666666665444 34444556677777777777777776666677777777777777665
Q ss_pred chhhhcCCCCceeecccccccC
Q 044748 515 PESFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 515 ~~~l~~l~~L~~L~l~~N~l~~ 536 (602)
+ +..+++|+.|++++|++.+
T Consensus 340 ~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 340 K--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp C--CCTTCCCSEEECCSSCEEH
T ss_pred C--hhhcCCCCEEEeeCCCCCC
Confidence 4 4556677777777777765
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.4e-29 Score=249.86 Aligned_cols=308 Identities=18% Similarity=0.201 Sum_probs=250.8
Q ss_pred CCcCcccceeeecccCCCCCCccccccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCC
Q 044748 167 GCTGIERLASFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLK 246 (602)
Q Consensus 167 ~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 246 (602)
.+..+++|++|++++ +.+..++. +..+++|++|++++|.+.+. +. +..+++|++|++++|.+... ..+..++
T Consensus 39 ~~~~l~~L~~L~l~~---~~i~~~~~-~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~ 110 (347)
T 4fmz_A 39 TQEELESITKLVVAG---EKVASIQG-IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLT 110 (347)
T ss_dssp CHHHHTTCSEEECCS---SCCCCCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred cchhcccccEEEEeC---Cccccchh-hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCC
Confidence 455788999999998 44555543 77799999999999976554 33 88999999999999977653 3588999
Q ss_pred CCcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhcc
Q 044748 247 ALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERL 326 (602)
Q Consensus 247 ~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l 326 (602)
+|+.|++++|.++.++. +..+++|+.|++++|.....++. +..+++|++|++++|. +. .+
T Consensus 111 ~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~-----------------~~ 170 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VK-----------------DV 170 (347)
T ss_dssp TCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CC-----------------CC
T ss_pred cCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cC-----------------Cc
Confidence 99999999999998877 78899999999999976665544 8889999999999864 22 22
Q ss_pred ccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCC
Q 044748 327 ASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLK 406 (602)
Q Consensus 327 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 406 (602)
+. +..+++|++|++++|.+.+. +. +..+++|+.+++++|.++.++. +..+++|++|++++|.+.+. +. +..++
T Consensus 171 ~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~-~~-~~~l~ 243 (347)
T 4fmz_A 171 TP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDL-SP-LANLS 243 (347)
T ss_dssp GG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCT
T ss_pred hh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCC-cc-hhcCC
Confidence 22 33488999999999986543 33 7889999999999999997765 78899999999999977644 33 78899
Q ss_pred CCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCc
Q 044748 407 SLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGT 486 (602)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n 486 (602)
+|++|++++|.+... + .+..+++|+.|++++|.+.+. ..+..+++|++|++++|
T Consensus 244 ~L~~L~l~~n~l~~~-~-----------------------~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 244 QLTWLEIGTNQISDI-N-----------------------AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp TCCEEECCSSCCCCC-G-----------------------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred CCCEEECCCCccCCC-h-----------------------hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC
Confidence 999999999876542 1 467789999999999987664 45788999999999999
Q ss_pred ccccC-cccccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccC
Q 044748 487 AIREV-PESLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 487 ~l~~l-~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~ 536 (602)
.++.. +..+..+++|+.|++++|+++.++. +..+++|++|++++|+|+.
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIKK 347 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC----
T ss_pred cCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcccC
Confidence 99855 4678999999999999999988766 8889999999999999863
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.6e-29 Score=270.20 Aligned_cols=312 Identities=16% Similarity=0.118 Sum_probs=262.0
Q ss_pred CCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCcccccccccc-ccccccccEEe
Q 044748 197 FKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPES-LGQLAILRRLK 275 (602)
Q Consensus 197 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~ 275 (602)
+.+++.++++++.+....+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.++.++.. ++.+++|+.|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56888888888866555555678899999999999999888888899999999999999999977654 68999999999
Q ss_pred ecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccc
Q 044748 276 LTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDEL 355 (602)
Q Consensus 276 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 355 (602)
+++|.+....+..+..+++|++|++++|. ++ .++...+..+++|++|++++|.+.+. .+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~-----------------~~~~~~~~~l~~L~~L~L~~N~l~~~---~~ 188 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNN-LE-----------------RIEDDTFQATTSLQNLQLSSNRLTHV---DL 188 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC-----------------BCCTTTTTTCTTCCEEECTTSCCSBC---CG
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCc-CC-----------------CCChhhhhcCCcCcEEECcCCCCCCc---Ch
Confidence 99997765555556899999999999963 33 44444455589999999999987654 25
Q ss_pred cCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcc
Q 044748 356 GNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTR 435 (602)
Q Consensus 356 ~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 435 (602)
..+++|+.|++++|.++.+ ...++|+.|++++|.+... +.. ..++|+.|++++|.+.+. .
T Consensus 189 ~~l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~~~-~~~--~~~~L~~L~L~~n~l~~~--~----------- 248 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--A----------- 248 (597)
T ss_dssp GGCTTCSEEECCSSCCSEE----ECCTTCSEEECCSSCCCEE-ECS--CCSCCCEEECCSSCCCCC--G-----------
T ss_pred hhhhhhhhhhcccCccccc----cCCchhheeeccCCccccc-ccc--cCCCCCEEECCCCCCCCC--h-----------
Confidence 6788999999999988754 3457899999999976533 322 247899999999987652 2
Q ss_pred hhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccc
Q 044748 436 IERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLP 515 (602)
Q Consensus 436 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~ 515 (602)
.+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++.+|..+..+++|+.|+|++|.++.+|
T Consensus 249 -----------~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~ 317 (597)
T 3oja_B 249 -----------WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE 317 (597)
T ss_dssp -----------GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCG
T ss_pred -----------hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccC
Confidence 577899999999999999999899999999999999999999999988888999999999999999999
Q ss_pred hhhhcCCCCceeecccccccCCchhhhcccccccccccceeecccccc
Q 044748 516 ESFNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLRYCLKL 563 (602)
Q Consensus 516 ~~l~~l~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~~~~~~L 563 (602)
..+..+++|+.|++++|.++.+| +..++ +|+.|++++|.+.|..+
T Consensus 318 ~~~~~l~~L~~L~L~~N~l~~~~--~~~~~-~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 318 RNQPQFDRLENLYLDHNSIVTLK--LSTHH-TLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp GGHHHHTTCSEEECCSSCCCCCC--CCTTC-CCSEEECCSSCEEHHHH
T ss_pred cccccCCCCCEEECCCCCCCCcC--hhhcC-CCCEEEeeCCCCCChhH
Confidence 98999999999999999999875 44555 99999999998887653
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.2e-27 Score=232.74 Aligned_cols=266 Identities=18% Similarity=0.208 Sum_probs=146.3
Q ss_pred cceeeecccCCCCCCccccccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEE
Q 044748 173 RLASFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLT 252 (602)
Q Consensus 173 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 252 (602)
+++.+++++ ..+..+|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|+
T Consensus 32 ~l~~l~~~~---~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSD---LGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTT---SCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecC---CCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 455555554 33344444332 4566666666655554444566666666666666666555566666666666666
Q ss_pred cCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhcccccccc
Q 044748 253 VDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLC 332 (602)
Q Consensus 253 l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 332 (602)
+++|+++.+|..+. ++|+.|++++|.+....+..+..+++|++|++
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-------------------------------- 152 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVEL-------------------------------- 152 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC--------------------------------
T ss_pred CCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEEC--------------------------------
Confidence 66666665554332 45555555555444333333444444444444
Q ss_pred CCCcccEEEEecCCCCc--cCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCe
Q 044748 333 MFKSLKYLEIVDCQNFK--RLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKS 410 (602)
Q Consensus 333 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 410 (602)
++|.+.. ..+..+..+++|++|++++|.++.+|..+. ++|++|++++|.+.+..+..+..+++|++
T Consensus 153 ----------~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 220 (330)
T 1xku_A 153 ----------GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAK 220 (330)
T ss_dssp ----------CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred ----------CCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 4444321 334456666777777777777766665432 56666666666555544555555666666
Q ss_pred EEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCccccc
Q 044748 411 IEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIRE 490 (602)
Q Consensus 411 L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~ 490 (602)
|++++|.+.. ..+..+..+++|++|++++|.++.
T Consensus 221 L~Ls~n~l~~----------------------------------------------~~~~~~~~l~~L~~L~L~~N~l~~ 254 (330)
T 1xku_A 221 LGLSFNSISA----------------------------------------------VDNGSLANTPHLRELHLNNNKLVK 254 (330)
T ss_dssp EECCSSCCCE----------------------------------------------ECTTTGGGSTTCCEEECCSSCCSS
T ss_pred EECCCCcCce----------------------------------------------eChhhccCCCCCCEEECCCCcCcc
Confidence 6666554433 333334445555556666665555
Q ss_pred CcccccCCCCCcEEEccCCcccccchh-hhc------CCCCceeeccccccc
Q 044748 491 VPESLGQLSSLESLVLSNNKLERLPES-FNQ------LSSLEYLQLFENSLE 535 (602)
Q Consensus 491 l~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~------l~~L~~L~l~~N~l~ 535 (602)
+|..+..+++|+.|++++|+|+.++.. |.. .+.++.|++++|++.
T Consensus 255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 555555556666666666665555432 221 245556666666654
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=4.4e-28 Score=237.21 Aligned_cols=249 Identities=21% Similarity=0.232 Sum_probs=188.9
Q ss_pred cccEEeecCCCCcc--ccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCC
Q 044748 270 ILRRLKLTNCSGLE--SISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQN 347 (602)
Q Consensus 270 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~ 347 (602)
+++.|++++|.+.+ .+|..+..+++|++|+++++..+. +.+|..+. .+++|++|++++|.+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~----------------~~~p~~l~-~l~~L~~L~Ls~n~l 113 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV----------------GPIPPAIA-KLTQLHYLYITHTNV 113 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE----------------SCCCGGGG-GCTTCSEEEEEEECC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc----------------ccCChhHh-cCCCCCEEECcCCee
Confidence 45555555555554 455555566666666665322222 13333332 266777777777776
Q ss_pred CccCCccccCCCCccEEEecCcccc-cCCccccccccCcEEeccCCCCCCccCccccCCC-CCCeEEeccCCCccccccC
Q 044748 348 FKRLPDELGNLKVLKRLTIDGTAIR-EVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLK-SLKSIEISNCSNFKRFLKI 425 (602)
Q Consensus 348 ~~~~~~~~~~~~~L~~L~l~~n~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~ 425 (602)
.+.+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..++ .|++|++++|.+.+.+|.
T Consensus 114 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~- 192 (313)
T 1ogq_A 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP- 192 (313)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-
T ss_pred CCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-
Confidence 6677777888888888888888888 6777788888888888888888778888888887 888888888887776666
Q ss_pred CCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEE
Q 044748 426 PSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLV 505 (602)
Q Consensus 426 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~ 505 (602)
.+..+. |+.|++++|.+.+..+..+..+++|++|++++|.++..+..+..+++|++|+
T Consensus 193 ---------------------~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~ 250 (313)
T 1ogq_A 193 ---------------------TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD 250 (313)
T ss_dssp ---------------------GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEE
T ss_pred ---------------------HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEE
Confidence 556665 8999999988888888888899999999999999986666688889999999
Q ss_pred ccCCccc-ccchhhhcCCCCceeecccccccC-Cchhhhcccccccccccceeeccc
Q 044748 506 LSNNKLE-RLPESFNQLSSLEYLQLFENSLEG-IPEYLRSLPSKLTSLNLSIDLRYC 560 (602)
Q Consensus 506 L~~n~l~-~l~~~l~~l~~L~~L~l~~N~l~~-~~~~l~~~~~~L~~L~l~~~~~~~ 560 (602)
+++|+++ .+|..+..+++|++|++++|++++ +|+. ..++ +|+.++++.|..-|
T Consensus 251 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~-~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ-RFDVSAYANNKCLC 305 (313)
T ss_dssp CCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGG-GSCGGGTCSSSEEE
T ss_pred CcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cccc-ccChHHhcCCCCcc
Confidence 9999995 888889999999999999999997 7765 5565 78888877776544
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=8.8e-27 Score=230.44 Aligned_cols=264 Identities=19% Similarity=0.185 Sum_probs=162.6
Q ss_pred cccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccc-cccccccccEEeecCCCCccccccccccCCCCcEEEee
Q 044748 223 SLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPE-SLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVIS 301 (602)
Q Consensus 223 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 301 (602)
+++.++++++.+. .+|..+ .+.++.|++++|+++.++. .+..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4555555554433 233322 2456666666666665543 35556666666666665544445555555556666555
Q ss_pred cCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCcccccc
Q 044748 302 HCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQL 381 (602)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l 381 (602)
+|. ++ .++... .++|++|++++|.+.+..+..+ ..+
T Consensus 109 ~n~-l~-----------------~l~~~~---~~~L~~L~l~~n~l~~~~~~~~-----------------------~~l 144 (330)
T 1xku_A 109 KNQ-LK-----------------ELPEKM---PKTLQELRVHENEITKVRKSVF-----------------------NGL 144 (330)
T ss_dssp SSC-CS-----------------BCCSSC---CTTCCEEECCSSCCCBBCHHHH-----------------------TTC
T ss_pred CCc-CC-----------------ccChhh---cccccEEECCCCcccccCHhHh-----------------------cCC
Confidence 531 11 122111 1344444444444333333334 444
Q ss_pred ccCcEEeccCCCCCC--ccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEe
Q 044748 382 AILRWLKLTNCSGLG--RISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKI 459 (602)
Q Consensus 382 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l 459 (602)
++|+.|++++|.+.. ..+..+..+++|++|++++|.+.. +|. . ..++|++|++
T Consensus 145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~----------------------~--~~~~L~~L~l 199 (330)
T 1xku_A 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ----------------------G--LPPSLTELHL 199 (330)
T ss_dssp TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCS----------------------S--CCTTCSEEEC
T ss_pred ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCc----------------------c--ccccCCEEEC
Confidence 555555555554421 334455556666666666655432 222 1 1256777778
Q ss_pred eccccccCCChhhhCCcccceEeecCcccccCcc-cccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCc
Q 044748 460 IDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE-SLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIP 538 (602)
Q Consensus 460 ~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~ 538 (602)
++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|+.|++++|+++.+|..+..+++|++|++++|+++++|
T Consensus 200 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccC
Confidence 7777777777788899999999999999997764 788999999999999999999999999999999999999999977
Q ss_pred hhhhccc------ccccccccceeec
Q 044748 539 EYLRSLP------SKLTSLNLSIDLR 558 (602)
Q Consensus 539 ~~l~~~~------~~L~~L~l~~~~~ 558 (602)
...+.-. +.++.++++.|+.
T Consensus 280 ~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 280 SNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred hhhcCCcccccccccccceEeecCcc
Confidence 6544321 3556666655543
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=7.1e-27 Score=231.21 Aligned_cols=243 Identities=16% Similarity=0.222 Sum_probs=121.9
Q ss_pred cccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccc-cccccccccccEEeecCCCCccccccccccCCCCcEEEee
Q 044748 223 SLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREV-PESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVIS 301 (602)
Q Consensus 223 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 301 (602)
+++.|++++|.+.+..+..+.++++|+.|++++|+++.+ |..+..+++|+.|++++|.+. .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 444444444444433333444444444444444444433 333444444444444444332 2222222 444555554
Q ss_pred cCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCC--ccCCccccCCCCccEEEecCcccccCCcccc
Q 044748 302 HCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNF--KRLPDELGNLKVLKRLTIDGTAIREVPKSLS 379 (602)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~ 379 (602)
+|. ++ .++...+..+++|++|++++|.+. +..+..+..+ +|++|++++|.++.+|..+.
T Consensus 132 ~n~-i~-----------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~ 192 (332)
T 2ft3_A 132 DNR-IR-----------------KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP 192 (332)
T ss_dssp SSC-CC-----------------CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC
T ss_pred CCc-cC-----------------ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc
Confidence 421 11 222222333455555555555543 2334445555 77777777777777665443
Q ss_pred ccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEe
Q 044748 380 QLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKI 459 (602)
Q Consensus 380 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l 459 (602)
++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 193 --~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~--------------------------------------- 231 (332)
T 2ft3_A 193 --ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM--------------------------------------- 231 (332)
T ss_dssp --SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC---------------------------------------
T ss_pred --CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc---------------------------------------
Confidence 567777777766555544555556666666666554433
Q ss_pred eccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccchh-hhc------CCCCceeecccc
Q 044748 460 IDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPES-FNQ------LSSLEYLQLFEN 532 (602)
Q Consensus 460 ~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~------l~~L~~L~l~~N 532 (602)
..+..+..+++|++|++++|.++.+|..+..+++|+.|++++|+|+.++.. |.. .++|+.|++++|
T Consensus 232 -------~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 232 -------IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp -------CCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred -------CChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecC
Confidence 333344455555555555555555555555555555555555555544432 222 244555666666
Q ss_pred ccc
Q 044748 533 SLE 535 (602)
Q Consensus 533 ~l~ 535 (602)
++.
T Consensus 305 ~~~ 307 (332)
T 2ft3_A 305 PVP 307 (332)
T ss_dssp SSC
T ss_pred ccc
Confidence 554
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=7.2e-27 Score=231.19 Aligned_cols=261 Identities=23% Similarity=0.235 Sum_probs=169.4
Q ss_pred cccEEeeeccCCCccCCcccCCCCCCcEEEcCcccccccc-ccccccccccEEeecCCCCccccccccccCCCCcEEEee
Q 044748 223 SLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVP-ESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVIS 301 (602)
Q Consensus 223 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 301 (602)
+++.++++++.+. .+|..+ .++++.|++++|.++.++ ..+..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4566666665443 333333 246666666666666553 345666666666666665554445555555555555555
Q ss_pred cCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCc-cccc
Q 044748 302 HCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPK-SLSQ 380 (602)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~ 380 (602)
+ |.+. .+|..+. ++|++|++++|.++.++. .+..
T Consensus 111 ~------------------------------------------n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~ 145 (332)
T 2ft3_A 111 K------------------------------------------NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSG 145 (332)
T ss_dssp S------------------------------------------SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSS
T ss_pred C------------------------------------------CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCC
Confidence 5 3322 2222222 455555555555554443 2455
Q ss_pred cccCcEEeccCCCCC--CccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEE
Q 044748 381 LAILRWLKLTNCSGL--GRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLK 458 (602)
Q Consensus 381 l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~ 458 (602)
+++|+.|++++|.+. +..+..+..+ +|++|++++|.+.. +|. .+ .++|++|+
T Consensus 146 l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~----------------------~~--~~~L~~L~ 199 (332)
T 2ft3_A 146 LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPK----------------------DL--PETLNELH 199 (332)
T ss_dssp CSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCS----------------------SS--CSSCSCCB
T ss_pred CccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCc----------------------cc--cCCCCEEE
Confidence 566666666666543 2334444455 67777777765443 222 11 25788888
Q ss_pred eeccccccCCChhhhCCcccceEeecCcccccCcc-cccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCC
Q 044748 459 IIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE-SLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGI 537 (602)
Q Consensus 459 l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~ 537 (602)
+++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|+.|++++|+++.+|..+..+++|++|++++|+++.+
T Consensus 200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCcc
Confidence 88888777777788899999999999999998764 78999999999999999999999999999999999999999997
Q ss_pred chhhh-cc-----cccccccccceee
Q 044748 538 PEYLR-SL-----PSKLTSLNLSIDL 557 (602)
Q Consensus 538 ~~~l~-~~-----~~~L~~L~l~~~~ 557 (602)
+...+ .. .+.|+.|+++.|+
T Consensus 280 ~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 280 GVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred ChhHccccccccccccccceEeecCc
Confidence 65432 22 2356666665544
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=6.2e-30 Score=265.83 Aligned_cols=356 Identities=18% Similarity=0.184 Sum_probs=204.6
Q ss_pred ccCceEecccccccccccc-cccccCCccEEEeeCCCCccc----cccCCCCCCCCCcCcccceeeecccCCCCCCcccc
Q 044748 117 SNLRELLIMDCSELESISS-SIFKLKSLKSIVISHCSNFKR----FLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLP 191 (602)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~ 191 (602)
++|++|+++++.+...... .+..+++|++|++++|.+... ++ ..+..+++|++|+++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-------~~l~~~~~L~~L~Ls----------- 64 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-------SALRVNPALAELNLR----------- 64 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-------HHHHTCTTCCEEECT-----------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-------HHHHhCCCcCEEeCC-----------
Confidence 4677777777755443222 256677777777777765432 12 233344445555554
Q ss_pred ccccCCCCCcccccccCCCCcccccch-hccc----cccEEeeeccCCCc----cCCcccCCCCCCcEEEcCccccccc-
Q 044748 192 INMFSFKSLPSIKIIHCPNIESLPSSL-CMFK----SLTSLEIVDCQNFK----RLPDELGNLKALQRLTVDRTAIREV- 261 (602)
Q Consensus 192 ~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~l- 261 (602)
+|.+....+..+ ..++ +|++|++++|.+.. .++..+..+++|+.|++++|.++..
T Consensus 65 ---------------~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 129 (461)
T 1z7x_W 65 ---------------SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG 129 (461)
T ss_dssp ---------------TCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred ---------------CCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHH
Confidence 443332222111 1222 46666666665542 3345556666666666666665521
Q ss_pred cccc-----cccccccEEeecCCCCccc----cccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhcccccccc
Q 044748 262 PESL-----GQLAILRRLKLTNCSGLES----ISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLC 332 (602)
Q Consensus 262 ~~~~-----~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 332 (602)
+..+ ...++|++|++++|.+... ++..+..+++|++|++++|. ++. .....+......
T Consensus 130 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~------------~~~~~l~~~l~~ 196 (461)
T 1z7x_W 130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INE------------AGVRVLCQGLKD 196 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cch------------HHHHHHHHHHhc
Confidence 1111 1234567777766655542 23444556677777776653 220 000112222222
Q ss_pred CCCcccEEEEecCCCCcc----CCccccCCCCccEEEecCcccccC------CccccccccCcEEeccCCCCCCc----c
Q 044748 333 MFKSLKYLEIVDCQNFKR----LPDELGNLKVLKRLTIDGTAIREV------PKSLSQLAILRWLKLTNCSGLGR----I 398 (602)
Q Consensus 333 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~i~~l------~~~~~~l~~L~~L~l~~~~~~~~----~ 398 (602)
..++|++|++++|.+.+. ++..+..+++|++|++++|.++.. +..+..+++|++|++++|.+... +
T Consensus 197 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 276 (461)
T 1z7x_W 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276 (461)
T ss_dssp SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred CCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence 245777777777765542 345556677788888887776632 11222467788888888766543 4
Q ss_pred CccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccc-hhccCCCCeEEeeccccccC----CChhhh
Q 044748 399 SSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLD-LCMVKNLTSLKIIDCQKFKR----LPNEIG 473 (602)
Q Consensus 399 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~l~ 473 (602)
+..+..+++|++|++++|.+....+. .+... ....++|++|++++|.+.+. ++..+.
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~------------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 338 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGAR------------------LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHH------------------HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred HHHHhhCCCcceEECCCCCCchHHHH------------------HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh
Confidence 55566677888888887765433221 00001 11225788888888876654 445566
Q ss_pred CCcccceEeecCcccccC-cc----cccC-CCCCcEEEccCCccc-----ccchhhhcCCCCceeecccccccC
Q 044748 474 NSKCLTVLIVKGTAIREV-PE----SLGQ-LSSLESLVLSNNKLE-----RLPESFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 474 ~~~~L~~L~L~~n~l~~l-~~----~~~~-l~~L~~L~L~~n~l~-----~l~~~l~~l~~L~~L~l~~N~l~~ 536 (602)
.+++|++|++++|.++.. +. .+.. .++|+.|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 678888888888887633 22 2222 568888888888886 567777788888888888888875
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=4.9e-30 Score=266.60 Aligned_cols=376 Identities=19% Similarity=0.137 Sum_probs=214.9
Q ss_pred cccchhccccc--cccC--CccccCcccCceEecccccccc----cccccccccCCccEEEeeCCCCccccccCCCCCCC
Q 044748 95 HICIFELAEVG--IKEL--PSSIECLSNLRELLIMDCSELE----SISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTD 166 (602)
Q Consensus 95 ~~~L~~L~l~~--~~~l--~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 166 (602)
.++|++|++++ +... ...+..+++|++|++++|.+.. .++..+..+++|++|++++|.+....+. .
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~------~ 75 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH------C 75 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH------H
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHH------H
Confidence 35788888887 3322 2336788999999999997654 4566678889999999999987653220 1
Q ss_pred CCcCcc----cceeeecccCCCCCC--ccccccccCCCCCcccccccCCCCcccccchh-----ccccccEEeeeccCCC
Q 044748 167 GCTGIE----RLASFKLKLEGCSSP--QSLPINMFSFKSLPSIKIIHCPNIESLPSSLC-----MFKSLTSLEIVDCQNF 235 (602)
Q Consensus 167 ~~~~l~----~L~~L~l~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~ 235 (602)
....++ +|++|+++++..... ..++..+..+++|++|++++|.+....+..+. ..++|++|++++|.+.
T Consensus 76 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 76 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 112233 577888877322211 14455666667777777777665433332221 1335666666666554
Q ss_pred ccC----CcccCCCCCCcEEEcCccccccc-ccccc-----ccccccEEeecCCCCccc----cccccccCCCCcEEEee
Q 044748 236 KRL----PDELGNLKALQRLTVDRTAIREV-PESLG-----QLAILRRLKLTNCSGLES----ISSSIFKLKSLKSIVIS 301 (602)
Q Consensus 236 ~~~----~~~~~~l~~L~~L~l~~n~l~~l-~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~ 301 (602)
+.. +..+..+++|+.|++++|.++.. +..+. ..++|+.|++++|.+... ++..+..+++|++|+++
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence 422 33344456666666666655521 11111 133566666666544432 33344445555555555
Q ss_pred cCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccC-----CccccCCCCccEEEecCccccc---
Q 044748 302 HCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRL-----PDELGNLKVLKRLTIDGTAIRE--- 373 (602)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~n~i~~--- 373 (602)
+ |.+.+.. +..+..+++|++|++++|.++.
T Consensus 236 ~------------------------------------------n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~ 273 (461)
T 1z7x_W 236 S------------------------------------------NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC 273 (461)
T ss_dssp S------------------------------------------SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH
T ss_pred C------------------------------------------CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH
Confidence 5 4322211 1112234555555555555553
Q ss_pred --CCccccccccCcEEeccCCCCCCccCcccc-----CCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhcccc
Q 044748 374 --VPKSLSQLAILRWLKLTNCSGLGRISSSIF-----KLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRL 446 (602)
Q Consensus 374 --l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (602)
++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+...... .+..
T Consensus 274 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------------------~l~~ 335 (461)
T 1z7x_W 274 GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS------------------HFSS 335 (461)
T ss_dssp HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH------------------HHHH
T ss_pred HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHH------------------HHHH
Confidence 344445556666666666644322111111 124666667666654432110 0111
Q ss_pred chhccCCCCeEEeeccccccCCChhhhC-----CcccceEeecCcccc-----cCcccccCCCCCcEEEccCCcccccc-
Q 044748 447 DLCMVKNLTSLKIIDCQKFKRLPNEIGN-----SKCLTVLIVKGTAIR-----EVPESLGQLSSLESLVLSNNKLERLP- 515 (602)
Q Consensus 447 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~L~~n~l~~l~- 515 (602)
.+..+++|++|++++|.+.+..+..+.. .++|++|++++|.++ .+|..+..+++|++|++++|+++...
T Consensus 336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~ 415 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 415 (461)
T ss_dssp HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHH
Confidence 4555677777777777665543333332 678999999999988 67778888899999999999985432
Q ss_pred ----hhhh-cCCCCceeecccccccC
Q 044748 516 ----ESFN-QLSSLEYLQLFENSLEG 536 (602)
Q Consensus 516 ----~~l~-~l~~L~~L~l~~N~l~~ 536 (602)
..+. ...+|+.|++.++.+..
T Consensus 416 ~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 416 LQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHHHHHhccCCcchhheeecccccCH
Confidence 1121 23468888888887765
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=4.9e-29 Score=267.59 Aligned_cols=367 Identities=16% Similarity=0.056 Sum_probs=225.7
Q ss_pred CceEecccccccc--cccccccccCCccEEEeeCCCCccc----cccCCCCCCCCCcCcccceeeecccCCCCCC--ccc
Q 044748 119 LRELLIMDCSELE--SISSSIFKLKSLKSIVISHCSNFKR----FLEIPSCNTDGCTGIERLASFKLKLEGCSSP--QSL 190 (602)
Q Consensus 119 L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~l 190 (602)
|++|++++|.... .++.....+++|++|++++|.+... ++ .....+++|++|+++++.+..+ ..+
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~-------~~~~~~~~L~~L~L~~n~~~~~~~~~l 212 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLH-------ELAQHNTSLEVLNFYMTEFAKISPKDL 212 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHH-------HHHHHCCCCCEEECTTCCCSSCCHHHH
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHH-------HHHhcCCCccEEEeeccCCCccCHHHH
Confidence 6666666654211 1222233556666666666644322 11 2234456666666666433311 234
Q ss_pred cccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCC---ccCCcccCCCCCCcEEEcCccccccccccccc
Q 044748 191 PINMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNF---KRLPDELGNLKALQRLTVDRTAIREVPESLGQ 267 (602)
Q Consensus 191 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~ 267 (602)
+..+..+++|+.|++++|...+ ++..+..+++|+.|++...... ......+..+++|+.++++++....+|..+..
T Consensus 213 ~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~ 291 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPF 291 (592)
T ss_dssp HHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGG
T ss_pred HHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhh
Confidence 4445567788888888775543 5666777888888888753322 23334566778888888888766677777778
Q ss_pred cccccEEeecCCCCccccc-cccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEec--
Q 044748 268 LAILRRLKLTNCSGLESIS-SSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVD-- 344 (602)
Q Consensus 268 l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~-- 344 (602)
+++|++|++++|.+..... ..+..+++|++|+++++ +. +.........+++|++|++++
T Consensus 292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--~~----------------~~~l~~~~~~~~~L~~L~L~~g~ 353 (592)
T 3ogk_B 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IG----------------DRGLEVLAQYCKQLKRLRIERGA 353 (592)
T ss_dssp GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--GH----------------HHHHHHHHHHCTTCCEEEEECCC
T ss_pred cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc--cC----------------HHHHHHHHHhCCCCCEEEeecCc
Confidence 8888888888887443322 33567888888888742 11 122222233477888888883
Q ss_pred --------CCCCc-c-CCccccCCCCccEEEecCcccc-cCCcccc-ccccCcEEeccC----CCCCCc-----cCcccc
Q 044748 345 --------CQNFK-R-LPDELGNLKVLKRLTIDGTAIR-EVPKSLS-QLAILRWLKLTN----CSGLGR-----ISSSIF 403 (602)
Q Consensus 345 --------~~~~~-~-~~~~~~~~~~L~~L~l~~n~i~-~l~~~~~-~l~~L~~L~l~~----~~~~~~-----~~~~~~ 403 (602)
|...+ . +......+++|++|+++.+.++ ..+..+. .+++|+.|++.+ +.+.+. ++..+.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~ 433 (592)
T 3ogk_B 354 DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433 (592)
T ss_dssp CSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH
T ss_pred cccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHH
Confidence 33332 1 2222445788888888777776 2223333 378888888863 333321 333356
Q ss_pred CCCCCCeEEeccCC--CccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeecccccc-CCChhhhCCcccce
Q 044748 404 KLKSLKSIEISNCS--NFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFK-RLPNEIGNSKCLTV 480 (602)
Q Consensus 404 ~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~ 480 (602)
.+++|++|+++.|. +....+. .....+++|++|++++|.+.+ .++..+..+++|++
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~---------------------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 492 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLS---------------------YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQK 492 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHH---------------------HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCE
T ss_pred hCCCCCEEEEecCCCCccHHHHH---------------------HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCe
Confidence 68899999997654 2222111 022347889999999988665 34445577889999
Q ss_pred EeecCccccc--CcccccCCCCCcEEEccCCcccccc--hhhhcCCCCceeecccc
Q 044748 481 LIVKGTAIRE--VPESLGQLSSLESLVLSNNKLERLP--ESFNQLSSLEYLQLFEN 532 (602)
Q Consensus 481 L~L~~n~l~~--l~~~~~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~l~~N 532 (602)
|++++|.++. ++.....+++|+.|++++|+++... .-...+|.+....+..+
T Consensus 493 L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 493 LEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred eeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 9999999862 4444567889999999999985432 22335677776666654
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.8e-28 Score=263.21 Aligned_cols=401 Identities=15% Similarity=0.109 Sum_probs=282.4
Q ss_pred CCCCcEEecCCCCcCc---CCcc-------------ccCCCCCcEEEcCCCcchhcchhhhcc-CC-CCcEEeccCCccc
Q 044748 1 LVNLKEIDLSGSESLT---KLPD-------------LSRAENLKILRLDDCLSLTETHSSIQY-LN-KLEFLTLEMCKSL 62 (602)
Q Consensus 1 l~~L~~L~l~~~~~~~---~~~~-------------~~~l~~L~~L~Ls~~~~~~~~~~~~~~-~~-~L~~L~l~~~~~~ 62 (602)
|++|++|++++|.... .+|. +..+++|++|+|++|.+....+..+.. ++ +|++|++++|...
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~ 151 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence 5789999999875322 1221 227899999999999877766666666 44 4999999998633
Q ss_pred c--CCCCcc-CccccceecccCCCCCCC----Ccccccccccchhccccc--cc-----cCCccccCcccCceEeccccc
Q 044748 63 T--SLPTGI-HSKYLKILNLWGCSNLNN----FPEITSCHICIFELAEVG--IK-----ELPSSIECLSNLRELLIMDCS 128 (602)
Q Consensus 63 ~--~l~~~~-~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~--~~-----~l~~~~~~l~~L~~L~l~~~~ 128 (602)
. .++..+ .+++|++|++++|.+.+. ++.....+++|++|+++. .. .++..+.++++|++|++++|.
T Consensus 152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 2 233333 789999999999976544 344556789999999987 32 445556788999999999985
Q ss_pred ccccccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecccCCCCCCccccccccCCCCCcccccccC
Q 044748 129 ELESISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPINMFSFKSLPSIKIIHC 208 (602)
Q Consensus 129 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 208 (602)
.. .++..+..+++|++|+++.......... ....+..+++|+.|.+.. .....+|..+..+++|++|++++|
T Consensus 232 ~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~~~~L~~L~l~~---~~~~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 232 IL-ELVGFFKAAANLEEFCGGSLNEDIGMPE----KYMNLVFPRKLCRLGLSY---MGPNEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp GG-GGHHHHHHCTTCCEEEECBCCCCTTCTT----SSSCCCCCTTCCEEEETT---CCTTTGGGGGGGGGGCCEEEETTC
T ss_pred HH-HHHHHHhhhhHHHhhcccccccccchHH----HHHHhhccccccccCccc---cchhHHHHHHhhcCCCcEEecCCC
Confidence 54 4677788899999999986433211110 115677888999999987 345567777778999999999999
Q ss_pred CCCcccc-cchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCc-----------cccc--cccccccccccccEE
Q 044748 209 PNIESLP-SSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDR-----------TAIR--EVPESLGQLAILRRL 274 (602)
Q Consensus 209 ~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-----------n~l~--~l~~~~~~l~~L~~L 274 (602)
.+..... ..+..+++|+.|++.++.....++..+..+++|+.|++++ +.++ .++.....+++|++|
T Consensus 304 ~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L 383 (592)
T 3ogk_B 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383 (592)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred cCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence 8544332 4467899999999984322233334446788999999993 4665 344445678999999
Q ss_pred eecCCCCcccccccccc-CCCCcEEEeecC---CCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCC--CC
Q 044748 275 KLTNCSGLESISSSIFK-LKSLKSIVISHC---SNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQ--NF 348 (602)
Q Consensus 275 ~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~--~~ 348 (602)
+++.+.+.+.....+.. +++|++|+++++ +.++.. |. . ..++. ...++++|++|+++.|. +.
T Consensus 384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~---p~-----~---~~~~~-~~~~~~~L~~L~L~~~~~~l~ 451 (592)
T 3ogk_B 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL---PL-----D---NGVRS-LLIGCKKLRRFAFYLRQGGLT 451 (592)
T ss_dssp EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC---CC-----H---HHHHH-HHHHCTTCCEEEEECCGGGCC
T ss_pred EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc---hH-----H---HHHHH-HHHhCCCCCEEEEecCCCCcc
Confidence 99877776655555655 899999999853 333310 00 0 01211 23348899999998654 33
Q ss_pred ccCCccc-cCCCCccEEEecCcccc--cCCccccccccCcEEeccCCCCCCc-cCccccCCCCCCeEEeccCCCccc
Q 044748 349 KRLPDEL-GNLKVLKRLTIDGTAIR--EVPKSLSQLAILRWLKLTNCSGLGR-ISSSIFKLKSLKSIEISNCSNFKR 421 (602)
Q Consensus 349 ~~~~~~~-~~~~~L~~L~l~~n~i~--~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~ 421 (602)
+.....+ ..+++|++|++++|.++ .++..+..+++|++|++++|.+.+. ++..+..+++|++|++++|++...
T Consensus 452 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 3322233 34889999999999987 3455567789999999999986543 344456789999999999985543
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=2.5e-27 Score=231.79 Aligned_cols=246 Identities=21% Similarity=0.188 Sum_probs=187.6
Q ss_pred CCCcEEEcCCCcchh--cchhhhccCCCCcEEeccC-CccccCCCCcc-CccccceecccCCCCCCCCcccccccccchh
Q 044748 25 ENLKILRLDDCLSLT--ETHSSIQYLNKLEFLTLEM-CKSLTSLPTGI-HSKYLKILNLWGCSNLNNFPEITSCHICIFE 100 (602)
Q Consensus 25 ~~L~~L~Ls~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 100 (602)
.++++|++++|.+.+ .+|..++.+++|++|++++ |...+.+|..+ .+++|++|++++|.+.+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467777777777666 6677777777777777773 54555666666 6777777777777666667777777777777
Q ss_pred ccccc--c-ccCCccccCcccCceEecccccccccccccccccC-CccEEEeeCCCCccccccCCCCCCCCCcCccccee
Q 044748 101 LAEVG--I-KELPSSIECLSNLRELLIMDCSELESISSSIFKLK-SLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLAS 176 (602)
Q Consensus 101 L~l~~--~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 176 (602)
|++++ + +.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+....| ..+..+. |++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~-------~~~~~l~-L~~ 201 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP-------PTFANLN-LAF 201 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC-------GGGGGCC-CSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC-------hHHhCCc-ccE
Confidence 77776 3 36777788888888888888877777788788887 88888888887776666 6666666 888
Q ss_pred eecccCCCCCCccccccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCcc
Q 044748 177 FKLKLEGCSSPQSLPINMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRT 256 (602)
Q Consensus 177 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 256 (602)
|+++++ ......|..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+.+|..+..+++|+.|++++|
T Consensus 202 L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 202 VDLSRN--MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp EECCSS--EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred EECcCC--cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 888872 22235666777788899999988877766665 677889999999999988888888999999999999999
Q ss_pred ccc-cccccccccccccEEeecCCCCc
Q 044748 257 AIR-EVPESLGQLAILRRLKLTNCSGL 282 (602)
Q Consensus 257 ~l~-~l~~~~~~l~~L~~L~l~~~~~~ 282 (602)
+++ .+|.. ..+++|+.+++++|+..
T Consensus 279 ~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 279 NLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp EEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred cccccCCCC-ccccccChHHhcCCCCc
Confidence 988 66764 78889999999988633
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=7.1e-25 Score=215.64 Aligned_cols=183 Identities=24% Similarity=0.344 Sum_probs=107.1
Q ss_pred ccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEee
Q 044748 222 KSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVIS 301 (602)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 301 (602)
.+++.|++++|.+. .+|..+..+++|++|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..+++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 56666777666554 4555556666777777777766666666666677777777766554 556666666666666666
Q ss_pred cCCCccccccCCCCCCCCCcchhcccccc--------ccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCccccc
Q 044748 302 HCSNFKRFLEIPSGNTDGSTRIERLASSN--------LCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIRE 373 (602)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 373 (602)
+|.... .+|... +..+++|++|++++|.+. .+|..+..+++|++|++++|.++.
T Consensus 159 ~n~~~~-----------------~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 159 ACPELT-----------------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EETTCC-----------------CCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCcc-----------------ccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 654333 222211 122555666666665543 455555556666666666666665
Q ss_pred CCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCcccccc
Q 044748 374 VPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLK 424 (602)
Q Consensus 374 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 424 (602)
+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|+..+.+|.
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 555555556666666666555555555555555555555555554444443
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=223.65 Aligned_cols=272 Identities=17% Similarity=0.171 Sum_probs=161.8
Q ss_pred CCCccccccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCcccccccccc
Q 044748 185 SSPQSLPINMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPES 264 (602)
Q Consensus 185 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~ 264 (602)
+.++.+|..+. +++++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.++++|++|++++|+++.++..
T Consensus 41 ~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 118 (353)
T 2z80_A 41 GSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118 (353)
T ss_dssp TTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH
T ss_pred CCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh
Confidence 44555555443 4677777777766555555677777777777777777666666677777777777777777777655
Q ss_pred -ccccccccEEeecCCCCccccc-cccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEE
Q 044748 265 -LGQLAILRRLKLTNCSGLESIS-SSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEI 342 (602)
Q Consensus 265 -~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l 342 (602)
+..+++|+.|++++|.+..... ..+..+++|++|++++|..++ .++...+..+++|++|++
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-----------------~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-----------------KIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-----------------EECTTTTTTCCEEEEEEE
T ss_pred HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-----------------ccCHHHccCCCCCCEEEC
Confidence 6677777777777775543222 255666777777776653333 333333333566666666
Q ss_pred ecCCCCccCCccccCCCCccEEEecCcccccCCccc-cccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccc
Q 044748 343 VDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSL-SQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKR 421 (602)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 421 (602)
++|.+.+..+..+..+++|++|++++|.++.++..+ ..+++|+.|++++|.+.+..+..+.
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~------------------ 243 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS------------------ 243 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc------------------
Confidence 666655555555555566666666655555444322 2244455555554433221111000
Q ss_pred cccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCC
Q 044748 422 FLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSL 501 (602)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L 501 (602)
.......++.+++.++ .++++.+..+|..+..+++|
T Consensus 244 -------------------------~~~~~~~l~~l~L~~~-------------------~l~~~~l~~l~~~l~~l~~L 279 (353)
T 2z80_A 244 -------------------------TGETNSLIKKFTFRNV-------------------KITDESLFQVMKLLNQISGL 279 (353)
T ss_dssp ----------------------------CCCCCCEEEEESC-------------------BCCHHHHHHHHHHHHTCTTC
T ss_pred -------------------------cccccchhhccccccc-------------------cccCcchhhhHHHHhcccCC
Confidence 0001122223332222 22333344567777888888
Q ss_pred cEEEccCCcccccchh-hhcCCCCceeecccccccCC
Q 044748 502 ESLVLSNNKLERLPES-FNQLSSLEYLQLFENSLEGI 537 (602)
Q Consensus 502 ~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~~ 537 (602)
+.|++++|+++.+|.. |..+++|++|++++|++++-
T Consensus 280 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 280 LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 8888888888888876 57888888888888888873
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=2.9e-25 Score=221.64 Aligned_cols=270 Identities=17% Similarity=0.196 Sum_probs=185.8
Q ss_pred CcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccc
Q 044748 248 LQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLA 327 (602)
Q Consensus 248 L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 327 (602)
....+.++++++.+|..+. ++|++|++++|.+....+..+..+++|++|++++| .++ .++
T Consensus 33 ~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~-----------------~~~ 92 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GIN-----------------TIE 92 (353)
T ss_dssp TSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCC-----------------EEC
T ss_pred CeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccC-----------------ccC
Confidence 3345555555555555332 35666666665544433335555666666666653 222 333
Q ss_pred cccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCc--cccccccCcEEeccCCCCCCc-cCccccC
Q 044748 328 SSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPK--SLSQLAILRWLKLTNCSGLGR-ISSSIFK 404 (602)
Q Consensus 328 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~--~~~~l~~L~~L~l~~~~~~~~-~~~~~~~ 404 (602)
...+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|++|++++|...+. .+..+..
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 172 (353)
T 2z80_A 93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence 3333336677777777776554443447777888888888888887765 577788888888888753333 3556778
Q ss_pred CCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeec
Q 044748 405 LKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVK 484 (602)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~ 484 (602)
+++|++|++++|.+.+..|. .+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 173 l~~L~~L~l~~n~l~~~~~~----------------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPK----------------------SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230 (353)
T ss_dssp CCEEEEEEEEETTCCEECTT----------------------TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEE
T ss_pred CCCCCEEECCCCCcCccCHH----------------------HHhccccCCeecCCCCccccchhhhhhhcccccEEECC
Confidence 88888888888877766555 66777888888888887644333344568899999999
Q ss_pred CcccccCcc----cccCCCCCcEEEccCCccc-----ccchhhhcCCCCceeecccccccCCchhh-hcccccccccccc
Q 044748 485 GTAIREVPE----SLGQLSSLESLVLSNNKLE-----RLPESFNQLSSLEYLQLFENSLEGIPEYL-RSLPSKLTSLNLS 554 (602)
Q Consensus 485 ~n~l~~l~~----~~~~l~~L~~L~L~~n~l~-----~l~~~l~~l~~L~~L~l~~N~l~~~~~~l-~~~~~~L~~L~l~ 554 (602)
+|.++.++. .......++.++++++.++ .+|..+..+++|++|++++|+++.+|..+ ..++ +|+.|+++
T Consensus 231 ~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L~~L~L~ 309 (353)
T 2z80_A 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLT-SLQKIWLH 309 (353)
T ss_dssp SCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC
T ss_pred CCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCC-CCCEEEee
Confidence 999886542 1234577888999998874 47788899999999999999999999886 4565 99999999
Q ss_pred eeeccc
Q 044748 555 IDLRYC 560 (602)
Q Consensus 555 ~~~~~~ 560 (602)
.|.+.|
T Consensus 310 ~N~~~~ 315 (353)
T 2z80_A 310 TNPWDC 315 (353)
T ss_dssp SSCBCC
T ss_pred CCCccC
Confidence 988755
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.4e-24 Score=213.46 Aligned_cols=226 Identities=21% Similarity=0.349 Sum_probs=157.0
Q ss_pred CCCCcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchh
Q 044748 245 LKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIE 324 (602)
Q Consensus 245 l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 324 (602)
.++++.|++++|+++.+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|. ++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~----------------- 140 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LR----------------- 140 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CC-----------------
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cc-----------------
Confidence 46789999999999999888888999999999998766 778888888888888888852 22
Q ss_pred ccccccccCCCcccEEEEecCCCCccCCccccC---------CCCccEEEecCcccccCCccccccccCcEEeccCCCCC
Q 044748 325 RLASSNLCMFKSLKYLEIVDCQNFKRLPDELGN---------LKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGL 395 (602)
Q Consensus 325 ~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---------~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~ 395 (602)
.+|..+.. +++|++|++++|+..+.+|..+.. +++|++|++++|.++.+|..+..+++|++|++++|.+.
T Consensus 141 ~lp~~l~~-l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 141 ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp CCCGGGGG-CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC
T ss_pred cCcHHHhc-CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC
Confidence 44444333 778888888888777777665543 44555555555555444444444444555544444333
Q ss_pred CccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCC
Q 044748 396 GRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNS 475 (602)
Q Consensus 396 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 475 (602)
.+|.. +..+++|++|++++|.+.+.+|..+..+
T Consensus 220 -~l~~~----------------------------------------------l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 220 -ALGPA----------------------------------------------IHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp -CCCGG----------------------------------------------GGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred -cCchh----------------------------------------------hccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 23333 4445555555555555566666667777
Q ss_pred cccceEeecCccc-ccCcccccCCCCCcEEEccCCcc-cccchhhhcCCCCceeecccccccCC
Q 044748 476 KCLTVLIVKGTAI-REVPESLGQLSSLESLVLSNNKL-ERLPESFNQLSSLEYLQLFENSLEGI 537 (602)
Q Consensus 476 ~~L~~L~L~~n~l-~~l~~~~~~l~~L~~L~L~~n~l-~~l~~~l~~l~~L~~L~l~~N~l~~~ 537 (602)
++|++|++++|.+ ..+|..+..+++|+.|++++|.+ +.+|..+..+++|+.+++..|.+..+
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 7788888887654 46777788888888888888875 78888888888888888888777653
No 55
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=3.3e-27 Score=253.58 Aligned_cols=327 Identities=15% Similarity=0.120 Sum_probs=192.8
Q ss_pred cCcccCceEeccccc--cc-ccccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecccCCC----CC
Q 044748 114 ECLSNLRELLIMDCS--EL-ESISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGC----SS 186 (602)
Q Consensus 114 ~~l~~L~~L~l~~~~--~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----~~ 186 (602)
..+++|++|++++|. +. ..+...+..+++|++|++++|.....++ ..+..+++|++|++..... +.
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-------~~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA-------TLLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH-------HHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH-------HHHhcCCcceEcccccccCccchhh
Confidence 356677777777764 11 1122223446777777777774444444 5556667777777654110 11
Q ss_pred CccccccccCCCCCccc-ccccCCCCcccccchhccccccEEeeeccCCCcc-CCcccCCCCCCcEEEcCccccc--ccc
Q 044748 187 PQSLPINMFSFKSLPSI-KIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKR-LPDELGNLKALQRLTVDRTAIR--EVP 262 (602)
Q Consensus 187 ~~~l~~~~~~~~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~--~l~ 262 (602)
+..++..+..+++|+.+ .+.+. ..+.++..+..+++|++|++++|.+... +...+..+++|+.|++++| ++ .++
T Consensus 254 ~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~ 331 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLE 331 (594)
T ss_dssp HHHHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHH
T ss_pred HHHHHHHHhcCCCcccccCCccc-chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHH
Confidence 22344455667777777 33332 2234555555678888888888875432 2223557788888888887 43 333
Q ss_pred ccccccccccEEeecCC---------CCcccccccc-ccCCCCcEEEeecCCCccccccCCCCCCCCCcchhcccccccc
Q 044748 263 ESLGQLAILRRLKLTNC---------SGLESISSSI-FKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLC 332 (602)
Q Consensus 263 ~~~~~l~~L~~L~l~~~---------~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 332 (602)
.....+++|+.|++.++ .........+ ..+++|++|.+.+ ..++ +........
T Consensus 332 ~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~----------------~~~~~~l~~ 394 (594)
T 2p1m_B 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMT----------------NAALITIAR 394 (594)
T ss_dssp HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCC----------------HHHHHHHHH
T ss_pred HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcC----------------HHHHHHHHh
Confidence 33445788888888432 2222111222 3478888886654 3343 122222233
Q ss_pred CCCcccEEEEe-----cCCCCccCC------ccccCCCCccEEEecCcccc-cCCcccc-ccccCcEEeccCCCCCCccC
Q 044748 333 MFKSLKYLEIV-----DCQNFKRLP------DELGNLKVLKRLTIDGTAIR-EVPKSLS-QLAILRWLKLTNCSGLGRIS 399 (602)
Q Consensus 333 ~~~~L~~L~l~-----~~~~~~~~~------~~~~~~~~L~~L~l~~n~i~-~l~~~~~-~l~~L~~L~l~~~~~~~~~~ 399 (602)
.+++|++|+++ +|...+..+ ..+..+++|++|++++ .++ ..+..+. .+++|+.|++++|.+.+...
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 36788888888 333333222 2255678899999977 554 2222333 37889999999887654433
Q ss_pred ccc-cCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhh-hCCcc
Q 044748 400 SSI-FKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEI-GNSKC 477 (602)
Q Consensus 400 ~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~ 477 (602)
..+ ..+++|++|++++|.+...... .....+++|+.|++++|+........+ ..+++
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~---------------------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~ 532 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALL---------------------ANASKLETMRSLWMSSCSVSFGACKLLGQKMPK 532 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHH---------------------HTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTT
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHH---------------------HHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCC
Confidence 333 5688899999999876332221 023457889999999988755444445 56788
Q ss_pred cceEeecCccc
Q 044748 478 LTVLIVKGTAI 488 (602)
Q Consensus 478 L~~L~L~~n~l 488 (602)
++...+..+.-
T Consensus 533 l~i~~~~~~~~ 543 (594)
T 2p1m_B 533 LNVEVIDERGA 543 (594)
T ss_dssp EEEEEECSSSC
T ss_pred CEEEEecCCCc
Confidence 88777776654
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=1.6e-24 Score=211.75 Aligned_cols=180 Identities=20% Similarity=0.259 Sum_probs=122.0
Q ss_pred CCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCc--cccccccCcEEeccCCCCCCccCccccCCCCCCeE
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPK--SLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSI 411 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 411 (602)
+++|++|++++|.+. .++..+..+++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 77 ~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 445555555555432 334446666777777777777775553 56667777777777776666666666677777777
Q ss_pred EeccCCCcc-ccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCccccc
Q 044748 412 EISNCSNFK-RFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIRE 490 (602)
Q Consensus 412 ~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~ 490 (602)
++++|.+.+ ..|. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.
T Consensus 156 ~l~~n~l~~~~~~~----------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 156 KMAGNSFQENFLPD----------------------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp ECTTCEEGGGEECS----------------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred ECCCCccccccchh----------------------HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 777776554 3343 45666777777777777766666677777788888888888876
Q ss_pred Ccc-cccCCCCCcEEEccCCcccc-cchhhhcCC-CCceeecccccccC
Q 044748 491 VPE-SLGQLSSLESLVLSNNKLER-LPESFNQLS-SLEYLQLFENSLEG 536 (602)
Q Consensus 491 l~~-~~~~l~~L~~L~L~~n~l~~-l~~~l~~l~-~L~~L~l~~N~l~~ 536 (602)
++. .+..+++|+.|++++|+++. .|..+..++ +|++|++++|++++
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 653 56777888888888888744 445566664 78888888888876
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=8.6e-25 Score=213.73 Aligned_cols=247 Identities=20% Similarity=0.207 Sum_probs=195.6
Q ss_pred cEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhcccc
Q 044748 249 QRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLAS 328 (602)
Q Consensus 249 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 328 (602)
+.++.++++++.+|..+ .+++++|++++|.+....+..+..+++|++|+
T Consensus 10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~----------------------------- 58 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLS----------------------------- 58 (306)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE-----------------------------
T ss_pred CEEEcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEE-----------------------------
Confidence 46677777777776533 25666666666654422222234444455544
Q ss_pred ccccCCCcccEEEEecCCCCc--cCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccC-ccccCC
Q 044748 329 SNLCMFKSLKYLEIVDCQNFK--RLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRIS-SSIFKL 405 (602)
Q Consensus 329 ~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~ 405 (602)
+++|.+.. ..+..+..+++|++|++++|.++.++..+..+++|++|++++|.+.+..+ ..+..+
T Consensus 59 -------------L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 125 (306)
T 2z66_A 59 -------------LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125 (306)
T ss_dssp -------------CCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTC
T ss_pred -------------CCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhc
Confidence 44444332 12344567899999999999999999889999999999999997765544 578899
Q ss_pred CCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeecccccc-CCChhhhCCcccceEeec
Q 044748 406 KSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFK-RLPNEIGNSKCLTVLIVK 484 (602)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~L~ 484 (602)
++|++|++++|.+....+. .+..+++|++|++++|.+.+ ..|..+..+++|++|+++
T Consensus 126 ~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNG----------------------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp TTCCEEECTTSCCEECSTT----------------------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred cCCCEEECCCCcCCccchh----------------------hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 9999999999988776665 67788999999999999876 578889999999999999
Q ss_pred CcccccC-cccccCCCCCcEEEccCCcccccch-hhhcCCCCceeecccccccC-Cchhhhcccccccccccceeecccc
Q 044748 485 GTAIREV-PESLGQLSSLESLVLSNNKLERLPE-SFNQLSSLEYLQLFENSLEG-IPEYLRSLPSKLTSLNLSIDLRYCL 561 (602)
Q Consensus 485 ~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~N~l~~-~~~~l~~~~~~L~~L~l~~~~~~~~ 561 (602)
+|.++.+ |..+..+++|+.|++++|+++.++. .+..+++|++|++++|++++ .|..+..+|++|+.|+++.|.+.|.
T Consensus 184 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 9999977 6788999999999999999987765 68889999999999999998 7778888877999999999988763
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=2.8e-23 Score=219.58 Aligned_cols=267 Identities=22% Similarity=0.189 Sum_probs=180.3
Q ss_pred CCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccccccccccccEEeecC
Q 044748 199 SLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTN 278 (602)
Q Consensus 199 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~ 278 (602)
+++.|+++++.+. .+|..+. ++|+.|++++|.+.. +|. .+++|+.|++++|+++.+|. .+++|+.|++++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence 4556666655443 4444332 566666666665543 333 35667777777777666665 456677777776
Q ss_pred CCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCC
Q 044748 279 CSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNL 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 358 (602)
|.+.. ++. .+++|+.|++++|. ++ .++.. +++|++|++++|.+.+ +|. .+
T Consensus 111 N~l~~-l~~---~l~~L~~L~L~~N~-l~-----------------~lp~~----l~~L~~L~Ls~N~l~~-l~~---~~ 160 (622)
T 3g06_A 111 NPLTH-LPA---LPSGLCKLWIFGNQ-LT-----------------SLPVL----PPGLQELSVSDNQLAS-LPA---LP 160 (622)
T ss_dssp CCCCC-CCC---CCTTCCEEECCSSC-CS-----------------CCCCC----CTTCCEEECCSSCCSC-CCC---CC
T ss_pred CcCCC-CCC---CCCCcCEEECCCCC-CC-----------------cCCCC----CCCCCEEECcCCcCCC-cCC---cc
Confidence 65433 333 45667777776642 22 22221 4677777777776543 332 34
Q ss_pred CCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhh
Q 044748 359 KVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIER 438 (602)
Q Consensus 359 ~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (602)
++|+.|++++|.++.+| ..+++|+.|++++|.+.+ +|. .+++|+.|++++|.+.. +|.
T Consensus 161 ~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~-------------- 218 (622)
T 3g06_A 161 SELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA-------------- 218 (622)
T ss_dssp TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC--------------
T ss_pred CCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC--------------
Confidence 57788888888888777 446778888888876543 443 34678888888876542 222
Q ss_pred hhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccchhh
Q 044748 439 LASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPESF 518 (602)
Q Consensus 439 l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~l 518 (602)
.+++|+.|++++|.+.+ +| ..+++|+.|++++|.++.+|. .+++|+.|++++|+|+.+|..+
T Consensus 219 -----------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l 280 (622)
T 3g06_A 219 -----------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESL 280 (622)
T ss_dssp -----------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGG
T ss_pred -----------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHH
Confidence 23678888888887654 44 456789999999999999886 6689999999999999999889
Q ss_pred hcCCCCceeecccccccC-Cchhhhccc
Q 044748 519 NQLSSLEYLQLFENSLEG-IPEYLRSLP 545 (602)
Q Consensus 519 ~~l~~L~~L~l~~N~l~~-~~~~l~~~~ 545 (602)
..+++|+.|++++|++++ .|..+..++
T Consensus 281 ~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 281 IHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp GGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred hhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 999999999999999988 666665554
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.6e-26 Score=248.10 Aligned_cols=373 Identities=12% Similarity=0.092 Sum_probs=197.5
Q ss_pred cccCceEeccccccccc--ccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecccCCCCCCc--ccc
Q 044748 116 LSNLRELLIMDCSELES--ISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQ--SLP 191 (602)
Q Consensus 116 l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~l~ 191 (602)
+++|++|++.+|...+. ++..+..+++|++|++++|.+....+. ........+++|++|+++++. ..+. .+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~---~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~ 204 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH---WLSHFPDTYTSLVSLNISCLA-SEVSFSALE 204 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGG---GGGGSCTTCCCCCEEECTTCC-SCCCHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchH---HHHHHhhcCCcCcEEEecccC-CcCCHHHHH
Confidence 44555555555522221 222233455555555555543221110 000122244555555555521 0111 122
Q ss_pred ccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCC------CccCCcccCCCCCCcEE-EcCcccccccccc
Q 044748 192 INMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQN------FKRLPDELGNLKALQRL-TVDRTAIREVPES 264 (602)
Q Consensus 192 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~------~~~~~~~~~~l~~L~~L-~l~~n~l~~l~~~ 264 (602)
.....+++|++|++++|...+.++..+..+++|+.|++..+.. ...++..+.++++|+.+ .+.+.....++..
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~ 284 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV 284 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH
Confidence 2223356666666666644444555566666677766554321 11122345566677766 3444333445555
Q ss_pred ccccccccEEeecCCCCccc-cccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEe
Q 044748 265 LGQLAILRRLKLTNCSGLES-ISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIV 343 (602)
Q Consensus 265 ~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~ 343 (602)
+..+++|++|++++|.+... +...+..+++|++|++++| ++ +.........+++|++|++.
T Consensus 285 ~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~----------------~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 285 YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IE----------------DAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GH----------------HHHHHHHHHHCTTCCEEEEE
T ss_pred HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cC----------------HHHHHHHHHhCCCCCEEEEe
Confidence 55667777777777763332 2223446677777777765 21 01111122236677777774
Q ss_pred cC---------CCCccCCccc-cCCCCccEEEecCcccccC-Cccc-cccccCcEEecc-----CCCCCCcc------Cc
Q 044748 344 DC---------QNFKRLPDEL-GNLKVLKRLTIDGTAIREV-PKSL-SQLAILRWLKLT-----NCSGLGRI------SS 400 (602)
Q Consensus 344 ~~---------~~~~~~~~~~-~~~~~L~~L~l~~n~i~~l-~~~~-~~l~~L~~L~l~-----~~~~~~~~------~~ 400 (602)
++ .+.+.....+ ..+++|++|.+..+.++.. ...+ ..+++|+.|++. +|...+.. +.
T Consensus 347 ~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~ 426 (594)
T 2p1m_B 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA 426 (594)
T ss_dssp CSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH
T ss_pred cCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH
Confidence 32 1111111111 2467788887776776621 1222 346788888887 23233322 22
Q ss_pred cccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchh-ccCCCCeEEeeccccccCCChhh-hCCccc
Q 044748 401 SIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLC-MVKNLTSLKIIDCQKFKRLPNEI-GNSKCL 478 (602)
Q Consensus 401 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L 478 (602)
.+..+++|++|++++ .+....+. .+. .+++|+.|++++|.+.+.....+ ..+++|
T Consensus 427 l~~~~~~L~~L~L~~-~l~~~~~~----------------------~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 427 IVEHCKDLRRLSLSG-LLTDKVFE----------------------YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL 483 (594)
T ss_dssp HHHHCTTCCEEECCS-SCCHHHHH----------------------HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred HHhhCCCccEEeecC-cccHHHHH----------------------HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc
Confidence 255678888888866 33332222 223 37788999998888655444444 568889
Q ss_pred ceEeecCcccccC--cccccCCCCCcEEEccCCccccc-chhh-hcCCCCceeeccccc
Q 044748 479 TVLIVKGTAIREV--PESLGQLSSLESLVLSNNKLERL-PESF-NQLSSLEYLQLFENS 533 (602)
Q Consensus 479 ~~L~L~~n~l~~l--~~~~~~l~~L~~L~L~~n~l~~l-~~~l-~~l~~L~~L~l~~N~ 533 (602)
++|++++|.++.. ......+++|+.|++++|+++.- ...+ ..+|.|+...+..+.
T Consensus 484 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 9999999988632 22345578999999999988321 1223 457888777776654
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=7.2e-23 Score=216.50 Aligned_cols=257 Identities=23% Similarity=0.236 Sum_probs=210.2
Q ss_pred ccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEee
Q 044748 222 KSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVIS 301 (602)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 301 (602)
.+++.|++++|.+. .+|..+. ++|+.|++++|.++.+|. .+++|+.|++++|.+. .+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 46999999998876 5666554 799999999999999987 5789999999999754 4555 67999999999
Q ss_pred cCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCcccccc
Q 044748 302 HCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQL 381 (602)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l 381 (602)
+|. ++ .++. .+++|++|++++|.+.+ +|.. +++|++|++++|.++.+|. .+
T Consensus 110 ~N~-l~-----------------~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---~~ 160 (622)
T 3g06_A 110 SNP-LT-----------------HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---LP 160 (622)
T ss_dssp SCC-CC-----------------CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CC
T ss_pred CCc-CC-----------------CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---cc
Confidence 863 33 3333 36899999999998654 5543 4899999999999998875 35
Q ss_pred ccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeec
Q 044748 382 AILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIID 461 (602)
Q Consensus 382 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 461 (602)
++|+.|++++|.+.+ +| ..+++|++|++++|.+.. +|. ..++|+.|++++
T Consensus 161 ~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~-------------------------~~~~L~~L~L~~ 210 (622)
T 3g06_A 161 SELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT-------------------------LPSELYKLWAYN 210 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-------------------------CCTTCCEEECCS
T ss_pred CCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC-------------------------ccchhhEEECcC
Confidence 789999999997654 55 467999999999987654 332 236899999999
Q ss_pred cccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCchhh
Q 044748 462 CQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPEYL 541 (602)
Q Consensus 462 ~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~l 541 (602)
|.+.. +|. .+++|+.|++++|.++.+| ..+++|+.|++++|+|+.+|. .+++|+.|++++|+|+.+|..+
T Consensus 211 N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l 280 (622)
T 3g06_A 211 NRLTS-LPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESL 280 (622)
T ss_dssp SCCSS-CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGG
T ss_pred Ccccc-cCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHH
Confidence 88664 443 3578999999999999998 456899999999999999987 6789999999999999999998
Q ss_pred hcccccccccccceeec
Q 044748 542 RSLPSKLTSLNLSIDLR 558 (602)
Q Consensus 542 ~~~~~~L~~L~l~~~~~ 558 (602)
..++ +|+.|+++.|..
T Consensus 281 ~~l~-~L~~L~L~~N~l 296 (622)
T 3g06_A 281 IHLS-SETTVNLEGNPL 296 (622)
T ss_dssp GGSC-TTCEEECCSCCC
T ss_pred hhcc-ccCEEEecCCCC
Confidence 8887 899988876553
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=1.4e-23 Score=215.83 Aligned_cols=245 Identities=22% Similarity=0.292 Sum_probs=159.8
Q ss_pred CcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccc
Q 044748 248 LQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLA 327 (602)
Q Consensus 248 L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 327 (602)
.+.++.++.+++.+|..+. ++++.|++++|.+....+..+..+++|++|++++|. ++ .++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~-----------------~i~ 104 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IR-----------------TIE 104 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CC-----------------EEC
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CC-----------------ccC
Confidence 3445555555555555332 455666666655544444555566666666666532 22 333
Q ss_pred cccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCc-cccccccCcEEeccCCCCCCccCc-cccCC
Q 044748 328 SSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPK-SLSQLAILRWLKLTNCSGLGRISS-SIFKL 405 (602)
Q Consensus 328 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~ 405 (602)
...+.++++|++|++++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|+.|++++|...+.++. .+..+
T Consensus 105 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l 184 (440)
T 3zyj_A 105 IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184 (440)
T ss_dssp GGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred hhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc
Confidence 3344446666777776666554444556677777777777777775553 566677777777777655555543 56677
Q ss_pred CCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecC
Q 044748 406 KSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKG 485 (602)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~ 485 (602)
++|++|++++|.+. .+| .+..+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 185 ~~L~~L~L~~n~l~-~~~-----------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 185 SNLRYLNLAMCNLR-EIP-----------------------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp SSCCEEECTTSCCS-SCC-----------------------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred cccCeecCCCCcCc-ccc-----------------------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence 77777777777554 222 245567778888888777777777777888888888888
Q ss_pred cccccCc-ccccCCCCCcEEEccCCcccccchh-hhcCCCCceeecccccccC
Q 044748 486 TAIREVP-ESLGQLSSLESLVLSNNKLERLPES-FNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 486 n~l~~l~-~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~ 536 (602)
|.++.++ ..|..+++|+.|+|++|+++.+|.. |..+++|+.|++++|++.+
T Consensus 241 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 8887653 5677778888888888888777653 6677888888888888765
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=1.4e-23 Score=216.66 Aligned_cols=244 Identities=21% Similarity=0.270 Sum_probs=157.9
Q ss_pred cEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhcccc
Q 044748 249 QRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLAS 328 (602)
Q Consensus 249 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 328 (602)
..++.++.+++.+|..+ .++++.|++++|.+....+..+..+++|++|++++| .++ .++.
T Consensus 57 ~~v~c~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~-----------------~~~~ 116 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIR-----------------QIEV 116 (452)
T ss_dssp CEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCC-----------------EECT
T ss_pred cEEEECCCCcCccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccC-----------------CcCh
Confidence 44555555555555432 245556666665555444555555666666666553 222 3333
Q ss_pred ccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCc-cccccccCcEEeccCCCCCCccCc-cccCCC
Q 044748 329 SNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPK-SLSQLAILRWLKLTNCSGLGRISS-SIFKLK 406 (602)
Q Consensus 329 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~ 406 (602)
..+.++++|++|++++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|+.|++++|...+.++. .+..++
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 196 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT
T ss_pred hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC
Confidence 334446666666666666555444556667777777777777775553 566677777777777655555543 466777
Q ss_pred CCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCc
Q 044748 407 SLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGT 486 (602)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n 486 (602)
+|++|++++|.+.. +| .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus 197 ~L~~L~L~~n~l~~-~~-----------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 197 NLKYLNLGMCNIKD-MP-----------------------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp TCCEEECTTSCCSS-CC-----------------------CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred CCCEEECCCCcccc-cc-----------------------cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 77777777775543 22 2445677777888877777777777778888888888888
Q ss_pred ccccC-cccccCCCCCcEEEccCCcccccchh-hhcCCCCceeecccccccC
Q 044748 487 AIREV-PESLGQLSSLESLVLSNNKLERLPES-FNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 487 ~l~~l-~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~ 536 (602)
.++.+ +..+..+++|+.|++++|+|+.+|.. +..+++|+.|++++|++.+
T Consensus 253 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred cCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 88755 45677778888888888888777653 6677888888888887765
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.8e-25 Score=218.73 Aligned_cols=178 Identities=21% Similarity=0.222 Sum_probs=91.4
Q ss_pred CCcccEEEEecCCCCccCCccccCC-----CCccEEEecCcccccCC-ccccccccCcEEeccCCCCCCc--cCccc--c
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNL-----KVLKRLTIDGTAIREVP-KSLSQLAILRWLKLTNCSGLGR--ISSSI--F 403 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~--~~~~~--~ 403 (602)
+++|++|++++|.+.+. |..+..+ ++|++|++++|.++.++ ..+..+++|++|++++|.+.+. ++..+ .
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 34444444444443333 3333332 45555555555555433 3444555555555555544332 11122 4
Q ss_pred CCCCCCeEEeccCCCcc--ccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCC-hhhhCCcccce
Q 044748 404 KLKSLKSIEISNCSNFK--RFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLP-NEIGNSKCLTV 480 (602)
Q Consensus 404 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~ 480 (602)
.+++|++|++++|.+.. .++. ..+..+++|++|++++|.+.+..| ..+..+++|++
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~---------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 257 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCS---------------------ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHH---------------------HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred cCCCCCEEECCCCcCcchHHHHH---------------------HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE
Confidence 55555555555554431 0110 022344556666666655555442 23344566666
Q ss_pred EeecCcccccCcccccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccC
Q 044748 481 LIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 481 L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~ 536 (602)
|++++|.++.+|..+. ++|+.|++++|+|+.+|. +..+++|++|++++|++++
T Consensus 258 L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 258 LNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred EECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 6666666666665554 566666666666666655 6666666666666666654
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=7.1e-25 Score=215.03 Aligned_cols=255 Identities=12% Similarity=0.094 Sum_probs=135.0
Q ss_pred ccEEeeeccCCCccCCcccCCCCCCcEEEcCcccccccc-ccccccccccEEeecCCCCccccccccccCCCCcEEEeec
Q 044748 224 LTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVP-ESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISH 302 (602)
Q Consensus 224 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 302 (602)
++..++..+.+.......+..+++|+.|++++|+++.++ ..+..+++|+.|++++|.+.+..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 334444444443333334455667777777777776554 346667777777777766544332 55666666666666
Q ss_pred CCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCC-cccccc
Q 044748 303 CSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVP-KSLSQL 381 (602)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l 381 (602)
|. ++ .++. .++|++|++++|.+.+..+. .+++|++|++++|.++.++ ..+..+
T Consensus 90 n~-l~-----------------~l~~-----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l 143 (317)
T 3o53_A 90 NY-VQ-----------------ELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCR 143 (317)
T ss_dssp SE-EE-----------------EEEE-----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGG
T ss_pred Cc-cc-----------------cccC-----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhcc
Confidence 41 11 2211 24555555555554333221 2344555555555555432 234444
Q ss_pred ccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeec
Q 044748 382 AILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIID 461 (602)
Q Consensus 382 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 461 (602)
++|++|++++|.+.+..+..+. ..+++|++|++++
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~---------------------------------------------~~l~~L~~L~L~~ 178 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELA---------------------------------------------ASSDTLEHLNLQY 178 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGG---------------------------------------------GGTTTCCEEECTT
T ss_pred CCCCEEECCCCCCCcccHHHHh---------------------------------------------hccCcCCEEECCC
Confidence 5555555555544433333221 2334444555544
Q ss_pred cccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccC--Cch
Q 044748 462 CQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEG--IPE 539 (602)
Q Consensus 462 ~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~--~~~ 539 (602)
|.+.+. + ....+++|++|++++|.++.+|..+..+++|+.|++++|+++.+|..+..+++|+.|++++|++++ +|.
T Consensus 179 N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 179 NFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp SCCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred CcCccc-c-cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 443332 1 122355666666666666666655666666666666666666666666666666666666666662 555
Q ss_pred hhhcccccccccccc
Q 044748 540 YLRSLPSKLTSLNLS 554 (602)
Q Consensus 540 ~l~~~~~~L~~L~l~ 554 (602)
.+..++ .|+.++++
T Consensus 257 ~~~~~~-~L~~l~l~ 270 (317)
T 3o53_A 257 FFSKNQ-RVQTVAKQ 270 (317)
T ss_dssp HHHTCH-HHHHHHHH
T ss_pred HHhccc-cceEEECC
Confidence 555554 55555543
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=2.8e-23 Score=200.63 Aligned_cols=157 Identities=22% Similarity=0.296 Sum_probs=72.7
Q ss_pred CCcccEEEEecCC-CCccCCccccCCCCccEEEecCcccccC-CccccccccCcEEeccCCCCCCccCccccCCCCCCeE
Q 044748 334 FKSLKYLEIVDCQ-NFKRLPDELGNLKVLKRLTIDGTAIREV-PKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSI 411 (602)
Q Consensus 334 ~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 411 (602)
+++|++|++++|. +.+..+..+..+++|++|++++|.++.+ +..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence 3444444444443 2222234444555555555555555433 2334445555555555554433333334444555555
Q ss_pred EeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccC
Q 044748 412 EISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREV 491 (602)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l 491 (602)
++++|.+. +..+..+..+++|++|++++|.++.+
T Consensus 159 ~l~~n~l~----------------------------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 159 FLHGNRIS----------------------------------------------SVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp ECCSSCCC----------------------------------------------EECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ECCCCccc----------------------------------------------ccCHHHhcCccccCEEECCCCccccc
Confidence 55544333 22222344444455555555554433
Q ss_pred -cccccCCCCCcEEEccCCcccccch-hhhcCCCCceeecccccccC
Q 044748 492 -PESLGQLSSLESLVLSNNKLERLPE-SFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 492 -~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~N~l~~ 536 (602)
|..+..+++|+.|++++|+++.++. .+..+++|++|++++|++.+
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 3444455555555555555544443 24445555555555555544
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=6.6e-25 Score=214.76 Aligned_cols=202 Identities=19% Similarity=0.187 Sum_probs=165.5
Q ss_pred CCcccEEEEecCCCCccCCccc--cCCCCccEEEecCcccccCCcccccc-----ccCcEEeccCCCCCCccCccccCCC
Q 044748 334 FKSLKYLEIVDCQNFKRLPDEL--GNLKVLKRLTIDGTAIREVPKSLSQL-----AILRWLKLTNCSGLGRISSSIFKLK 406 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~i~~l~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~ 406 (602)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.++.+|..+..+ ++|++|++++|.+.+..+..+..++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 6788889999888887788765 88999999999999999888777777 8999999999998877778899999
Q ss_pred CCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeecccccc--CCC-hhhhCCcccceEee
Q 044748 407 SLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFK--RLP-NEIGNSKCLTVLIV 483 (602)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~-~~l~~~~~L~~L~L 483 (602)
+|++|++++|.+.+.++..+ ...+..+++|++|++++|.+.+ .++ ..+..+++|++|++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~L 235 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLIS------------------ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHH------------------HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEEC
T ss_pred CCCEEECCCCCcCcchHHHH------------------HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEEC
Confidence 99999999998765422100 0023678999999999998763 222 33467899999999
Q ss_pred cCcccccCc--ccccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCchhhhcccccccccccceee
Q 044748 484 KGTAIREVP--ESLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDL 557 (602)
Q Consensus 484 ~~n~l~~l~--~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~ 557 (602)
++|.++..+ ..+..+++|+.|++++|+|+.+|..+. ++|++|++++|+|+++|. +..++ +|+.|+++.|.
T Consensus 236 s~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~-~L~~L~L~~N~ 307 (312)
T 1wwl_A 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELP-QVGNLSLKGNP 307 (312)
T ss_dssp TTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSC-EEEEEECTTCT
T ss_pred CCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCC-CCCEEeccCCC
Confidence 999998754 456678999999999999999998765 899999999999999876 66665 78887766554
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=6.4e-24 Score=220.26 Aligned_cols=234 Identities=12% Similarity=0.073 Sum_probs=138.5
Q ss_pred CCCCcEEEcCcccccccc-ccccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcch
Q 044748 245 LKALQRLTVDRTAIREVP-ESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRI 323 (602)
Q Consensus 245 l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 323 (602)
+++|+.|++++|.++.++ ..+..+++|+.|++++|.+.+..+ +..+++|++|++++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~--------------------- 89 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN--------------------- 89 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCS---------------------
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecC---------------------
Confidence 335666666666665443 345555666666666655443332 44555555555554
Q ss_pred hccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCcccc
Q 044748 324 ERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIF 403 (602)
Q Consensus 324 ~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 403 (602)
|.+.+. ...++|++|++++|.++.++. ..+++|+.|++++|.+.+..|..+.
T Consensus 90 ---------------------N~l~~l-----~~~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~ 141 (487)
T 3oja_A 90 ---------------------NYVQEL-----LVGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEG 141 (487)
T ss_dssp ---------------------SEEEEE-----EECTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGG
T ss_pred ---------------------CcCCCC-----CCCCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhc
Confidence 432211 112455555555555554432 2345566666666655555555555
Q ss_pred CCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchh-ccCCCCeEEeeccccccCCChhhhCCcccceEe
Q 044748 404 KLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLC-MVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLI 482 (602)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 482 (602)
.+++|++|++++|.+.+..|. .+. .+++|+.|++++|.+.+..+ ...+++|++|+
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~----------------------~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~ 197 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFA----------------------ELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLD 197 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGG----------------------GGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEE
T ss_pred CCCCCCEEECCCCCCCCcChH----------------------HHhhhCCcccEEecCCCccccccc--cccCCCCCEEE
Confidence 566666666666655554443 332 45666666666666544422 23467788888
Q ss_pred ecCcccccCcccccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccC--Cchhhhcccccccccccc
Q 044748 483 VKGTAIREVPESLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEG--IPEYLRSLPSKLTSLNLS 554 (602)
Q Consensus 483 L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~--~~~~l~~~~~~L~~L~l~ 554 (602)
+++|.++.+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|++.+ +|..+..++ .|+.++++
T Consensus 198 Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~-~L~~l~~~ 270 (487)
T 3oja_A 198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ-RVQTVAKQ 270 (487)
T ss_dssp CCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH-HHHHHHHH
T ss_pred CCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC-CCcEEecc
Confidence 888888777777777788888888888887777777777788888888888773 656665555 66666654
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=3e-24 Score=210.60 Aligned_cols=262 Identities=16% Similarity=0.145 Sum_probs=203.8
Q ss_pred CCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccccccccccccEEeecC
Q 044748 199 SLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTN 278 (602)
Q Consensus 199 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~ 278 (602)
.++..+++.+.+.......+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++.++. +..+++|+.|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 34455566655544444555667899999999999888777889999999999999999997766 88999999999999
Q ss_pred CCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCC
Q 044748 279 CSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNL 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 358 (602)
|.+.+ + ...++|++|++++|. ++ .++.. .+++|++|++++|.+.+..+..+..+
T Consensus 90 n~l~~-l----~~~~~L~~L~l~~n~-l~-----------------~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l 143 (317)
T 3o53_A 90 NYVQE-L----LVGPSIETLHAANNN-IS-----------------RVSCS---RGQGKKNIYLANNKITMLRDLDEGCR 143 (317)
T ss_dssp SEEEE-E----EECTTCCEEECCSSC-CS-----------------EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGG
T ss_pred Ccccc-c----cCCCCcCEEECCCCc-cC-----------------CcCcc---ccCCCCEEECCCCCCCCccchhhhcc
Confidence 96543 2 244899999999963 33 23322 26789999999999887777788899
Q ss_pred CCccEEEecCcccccCC-ccc-cccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcch
Q 044748 359 KVLKRLTIDGTAIREVP-KSL-SQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRI 436 (602)
Q Consensus 359 ~~L~~L~l~~n~i~~l~-~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 436 (602)
++|++|++++|.++.++ ..+ ..+++|++|++++|.+.+. +. ...+++|++|++++|
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N-------------------- 201 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSN-------------------- 201 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSS--------------------
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCC--------------------
Confidence 99999999999999654 334 4689999999999976533 22 223555666666555
Q ss_pred hhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCccc--cc
Q 044748 437 ERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLE--RL 514 (602)
Q Consensus 437 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~--~l 514 (602)
.+.+ ++..+..+++|++|++++|.++.+|..+..+++|+.|++++|.++ .+
T Consensus 202 --------------------------~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 202 --------------------------KLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp --------------------------CCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred --------------------------cCCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCH
Confidence 3332 233467788999999999999999999999999999999999996 67
Q ss_pred chhhhcCCCCceeecccc-cccC
Q 044748 515 PESFNQLSSLEYLQLFEN-SLEG 536 (602)
Q Consensus 515 ~~~l~~l~~L~~L~l~~N-~l~~ 536 (602)
|..+..+++|+.++++++ .+++
T Consensus 255 ~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 255 RDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHhccccceEEECCCchhccC
Confidence 778889999999999965 5655
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=1.7e-22 Score=195.14 Aligned_cols=204 Identities=21% Similarity=0.266 Sum_probs=159.3
Q ss_pred CCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccC-CccccccccCcEEeccCCC-CCCccCccccCCCCCCeE
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREV-PKSLSQLAILRWLKLTNCS-GLGRISSSIFKLKSLKSI 411 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L 411 (602)
.+++++|++++|.+.+..+..+..+++|++|++++|.++.+ +..+..+++|++|++++|. +....+..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 34667777777766555555667777777777777777755 4566777777777777776 333335667777888888
Q ss_pred EeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccC
Q 044748 412 EISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREV 491 (602)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l 491 (602)
++++|.+....+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.+
T Consensus 111 ~l~~n~l~~~~~~----------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 111 HLDRCGLQELGPG----------------------LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp ECTTSCCCCCCTT----------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ECCCCcCCEECHh----------------------HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 8888776655444 566778888888888887776666788999999999999999988
Q ss_pred cc-cccCCCCCcEEEccCCccccc-chhhhcCCCCceeecccccccCCchh-hhcccccccccccceeeccc
Q 044748 492 PE-SLGQLSSLESLVLSNNKLERL-PESFNQLSSLEYLQLFENSLEGIPEY-LRSLPSKLTSLNLSIDLRYC 560 (602)
Q Consensus 492 ~~-~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~N~l~~~~~~-l~~~~~~L~~L~l~~~~~~~ 560 (602)
+. .+..+++|+.|++++|+++.+ |..+..+++|++|++++|+++++|.. +..++ +|+.|+++.|.+.|
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR-ALQYLRLNDNPWVC 239 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT-TCCEEECCSSCEEC
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc-ccCEEeccCCCccC
Confidence 75 588999999999999999665 67899999999999999999997655 56665 99999999998876
No 70
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=3.7e-22 Score=206.06 Aligned_cols=236 Identities=17% Similarity=0.148 Sum_probs=137.7
Q ss_pred CccccccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCcccccccccc-c
Q 044748 187 PQSLPINMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPES-L 265 (602)
Q Consensus 187 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~ 265 (602)
+..+|..+. ++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|.++++|+.|++++|+++.++.. +
T Consensus 66 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 143 (452)
T 3zyi_A 66 LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF 143 (452)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS
T ss_pred cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhh
Confidence 344444332 4566666666655555555566666666666666666555555566666666666666666655443 5
Q ss_pred cccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecC
Q 044748 266 GQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDC 345 (602)
Q Consensus 266 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~ 345 (602)
..+++|+.|++++|.+....+..+..+++|++|++++|..+. .++...+..+++|++|++++|
T Consensus 144 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~-----------------~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-----------------YISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC-----------------EECTTTTTTCTTCCEEECTTS
T ss_pred cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc-----------------ccChhhccCCCCCCEEECCCC
Confidence 556666666666665544434455566666666666654433 444444444666666666666
Q ss_pred CCCccCCccccCCCCccEEEecCcccccC-CccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCcccccc
Q 044748 346 QNFKRLPDELGNLKVLKRLTIDGTAIREV-PKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLK 424 (602)
Q Consensus 346 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 424 (602)
.+.+ ++ .+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+.
T Consensus 207 ~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 284 (452)
T 3zyi_A 207 NIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284 (452)
T ss_dssp CCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH
Confidence 5433 23 355666666666666666644 44566666666666666666555555666666666666666655433332
Q ss_pred CCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccc
Q 044748 425 IPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKF 465 (602)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 465 (602)
.+..+++|+.|++++|++.
T Consensus 285 ----------------------~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 285 ----------------------LFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ----------------------SSTTCTTCCEEECCSSCEE
T ss_pred ----------------------HhccccCCCEEEccCCCcC
Confidence 3445566666666666543
No 71
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=4.5e-22 Score=204.67 Aligned_cols=117 Identities=14% Similarity=0.107 Sum_probs=55.8
Q ss_pred CCCccccccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccc-
Q 044748 185 SSPQSLPINMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPE- 263 (602)
Q Consensus 185 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~- 263 (602)
..+..+|..+. ++++.|++++|.+....+..+..+++|+.|++++|.+.+..+..|.++++|+.|++++|+++.++.
T Consensus 53 ~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 130 (440)
T 3zyj_A 53 KNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130 (440)
T ss_dssp CCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred CCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHh
Confidence 33444444332 445555555555444444445555555555555555444444445555555555555555554443
Q ss_pred cccccccccEEeecCCCCccccccccccCCCCcEEEeecC
Q 044748 264 SLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHC 303 (602)
Q Consensus 264 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 303 (602)
.+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC
Confidence 2444555555555554433333333444444444444443
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=2e-22 Score=208.96 Aligned_cols=235 Identities=13% Similarity=0.098 Sum_probs=149.0
Q ss_pred cccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEe
Q 044748 221 FKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVI 300 (602)
Q Consensus 221 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 300 (602)
+++|+.|++++|.+.+..|..|..+++|+.|++++|.++.++. +..+++|+.|++++|.+.+ ++ ..++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CC----CCCCcCEEEC
Confidence 4467777777777766666677777777777777777775554 6677777777777774332 11 2255666666
Q ss_pred ecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccc
Q 044748 301 SHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQ 380 (602)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~ 380 (602)
++|. ++ .++. ..+++|++|++++|.+.+..+..+ ..
T Consensus 107 ~~N~-l~-----------------~~~~---~~l~~L~~L~L~~N~l~~~~~~~~-----------------------~~ 142 (487)
T 3oja_A 107 ANNN-IS-----------------RVSC---SRGQGKKNIYLANNKITMLRDLDE-----------------------GC 142 (487)
T ss_dssp CSSC-CC-----------------CEEE---CCCSSCEEEECCSSCCCSGGGBCG-----------------------GG
T ss_pred cCCc-CC-----------------CCCc---cccCCCCEEECCCCCCCCCCchhh-----------------------cC
Confidence 5532 11 1111 113344444444444444333334 44
Q ss_pred cccCcEEeccCCCCCCccCcccc-CCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEe
Q 044748 381 LAILRWLKLTNCSGLGRISSSIF-KLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKI 459 (602)
Q Consensus 381 l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l 459 (602)
+++|+.|++++|.+.+..|..+. .+++|++|++++|.+.+. + ....+++|+.|++
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-----------------------~~~~l~~L~~L~L 198 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-----------------------GQVVFAKLKTLDL 198 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-----------------------CCCCCTTCCEEEC
T ss_pred CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-----------------------ccccCCCCCEEEC
Confidence 44555555555544444443333 455555555555544432 1 1123566677777
Q ss_pred eccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCccc--ccchhhhcCCCCceeecc
Q 044748 460 IDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLE--RLPESFNQLSSLEYLQLF 530 (602)
Q Consensus 460 ~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~--~l~~~l~~l~~L~~L~l~ 530 (602)
++|.+.+.. ..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..++.|+.++++
T Consensus 199 s~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 199 SSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CSSCCCEEC-GGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCCC-HhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 776655533 3477889999999999999999998999999999999999986 777788889999999987
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=3.8e-21 Score=184.77 Aligned_cols=157 Identities=16% Similarity=0.209 Sum_probs=98.5
Q ss_pred CCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCc-cccccccCcEEeccCCCCCC-ccCccccCCCCCCeE
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPK-SLSQLAILRWLKLTNCSGLG-RISSSIFKLKSLKSI 411 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L 411 (602)
+++|++|++++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|++|++++|.+.+ .+|..+..+++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 4445555555554444444445555566666666655554432 34555555555555554433 234445555555555
Q ss_pred EeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccc----eEeecCcc
Q 044748 412 EISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLT----VLIVKGTA 487 (602)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~L~~n~ 487 (602)
++++| .+.+..+..+..+++|+ .|++++|.
T Consensus 155 ~Ls~N----------------------------------------------~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 155 DLSSN----------------------------------------------KIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp ECCSS----------------------------------------------CCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred ECCCC----------------------------------------------CCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 55554 43333333344444444 78999999
Q ss_pred cccCcccccCCCCCcEEEccCCcccccchh-hhcCCCCceeecccccccC
Q 044748 488 IREVPESLGQLSSLESLVLSNNKLERLPES-FNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 488 l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~ 536 (602)
++.++.......+|+.|++++|+++.+|.. +..+++|+.|++++|++++
T Consensus 189 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 988876666667899999999999888765 6789999999999999987
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=1.4e-21 Score=187.75 Aligned_cols=211 Identities=19% Similarity=0.122 Sum_probs=176.5
Q ss_pred CCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCc-cccccccCcEEeccCCCCCCccCccccCCCCCCeEE
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPK-SLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIE 412 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 412 (602)
.+++++|++++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 3579999999999877766689999999999999999997664 688899999999999988777778899999999999
Q ss_pred eccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeecccccc-CCChhhhCCcccceEeecCcccccC
Q 044748 413 ISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFK-RLPNEIGNSKCLTVLIVKGTAIREV 491 (602)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~L~~n~l~~l 491 (602)
+++|.+....+. .+..+++|++|++++|.+.+ .+|..+..+++|++|++++|+++.+
T Consensus 107 l~~n~l~~~~~~----------------------~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 107 AVETNLASLENF----------------------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CTTSCCCCSTTC----------------------CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCCccccCch----------------------hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 999987665443 56788999999999999877 4688999999999999999999977
Q ss_pred c-ccccCCCCCc----EEEccCCcccccchhhhcCCCCceeecccccccCCchhhhcccccccccccceeeccc--cccc
Q 044748 492 P-ESLGQLSSLE----SLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLRYC--LKLD 564 (602)
Q Consensus 492 ~-~~~~~l~~L~----~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~~~~--~~L~ 564 (602)
+ ..+..+++|+ .|++++|+++.++.......+|++|++++|+++.+|.....-.++|+.|+++.|.+.| +.++
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence 5 4565555666 8999999998888765566699999999999999877654433499999999999765 3444
Q ss_pred cc
Q 044748 565 SN 566 (602)
Q Consensus 565 ~~ 566 (602)
.+
T Consensus 245 ~l 246 (276)
T 2z62_A 245 YL 246 (276)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=8.7e-21 Score=181.38 Aligned_cols=201 Identities=24% Similarity=0.321 Sum_probs=151.5
Q ss_pred CcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCc-cccccccCcEEeccCCCCCCccCccccCCCCCCeEEe
Q 044748 335 KSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPK-SLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEI 413 (602)
Q Consensus 335 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 413 (602)
...+.++++++.+. .+|..+. +++++|++++|.++.++. .+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35677888877644 4554443 578888888888887764 6778888888888888766444445677888888888
Q ss_pred ccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcc
Q 044748 414 SNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE 493 (602)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~ 493 (602)
++|.+....+. .+..+++|++|++++|.+....+..+..+++|++|++++|.++.+|.
T Consensus 93 ~~n~l~~~~~~----------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 93 TDNKLQALPIG----------------------VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp CSSCCCCCCTT----------------------TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcCCcCCHh----------------------HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH
Confidence 88876654333 56677888888888888777777777888888888888888887775
Q ss_pred c-ccCCCCCcEEEccCCcccccch-hhhcCCCCceeecccccccCCchh-hhcccccccccccceeecccc
Q 044748 494 S-LGQLSSLESLVLSNNKLERLPE-SFNQLSSLEYLQLFENSLEGIPEY-LRSLPSKLTSLNLSIDLRYCL 561 (602)
Q Consensus 494 ~-~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~N~l~~~~~~-l~~~~~~L~~L~l~~~~~~~~ 561 (602)
. +..+++|+.|++++|+++.++. .|..+++|++|++++|+++.+|.. +..++ +|+.|+++.|++.|.
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE-KLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBCCS
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcccc-CCCEEEecCCCeeCC
Confidence 4 6778888888888888877765 477888888888888888886665 34444 888888888887664
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=7.1e-21 Score=183.44 Aligned_cols=203 Identities=19% Similarity=0.177 Sum_probs=152.0
Q ss_pred cccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecC
Q 044748 289 IFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDG 368 (602)
Q Consensus 289 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 368 (602)
+..++++++++++++ .++ .+|... .+++++|++++|.+.+..+..+..+++|++|++++
T Consensus 6 ~~~l~~l~~l~~~~~-~l~-----------------~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 64 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLT-----------------ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64 (290)
T ss_dssp EECSTTCCEEECTTS-CCS-----------------SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT
T ss_pred ccccCCccEEECCCC-CCC-----------------cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC
Confidence 456777888888773 233 444433 35788888888887766667788888888888888
Q ss_pred cccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccch
Q 044748 369 TAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDL 448 (602)
Q Consensus 369 n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 448 (602)
|.++.++.. ..+++|+.|++++|.+. .+|..+..+++|++|++++|.+....+. .+
T Consensus 65 n~l~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~----------------------~~ 120 (290)
T 1p9a_G 65 AELTKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG----------------------AL 120 (290)
T ss_dssp SCCCEEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSS----------------------TT
T ss_pred CccCcccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHH----------------------HH
Confidence 888876653 67788888888888654 6677777888888888888876654444 56
Q ss_pred hccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCccc-ccCCCCCcEEEccCCcccccchhhhcCCCCcee
Q 044748 449 CMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPES-LGQLSSLESLVLSNNKLERLPESFNQLSSLEYL 527 (602)
Q Consensus 449 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L 527 (602)
..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++.+|.. +..+++|+.|++++|+++.+|..+...++|+.+
T Consensus 121 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFA 200 (290)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEE
T ss_pred cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeE
Confidence 6777888888888877766666677788888888888888877753 466788888888888888888777777788888
Q ss_pred ecccccccC
Q 044748 528 QLFENSLEG 536 (602)
Q Consensus 528 ~l~~N~l~~ 536 (602)
++++|++.+
T Consensus 201 ~L~~Np~~C 209 (290)
T 1p9a_G 201 FLHGNPWLC 209 (290)
T ss_dssp ECCSCCBCC
T ss_pred EeCCCCccC
Confidence 888888776
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=6.9e-21 Score=183.56 Aligned_cols=201 Identities=22% Similarity=0.171 Sum_probs=172.8
Q ss_pred cCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCC-ccccccccCcEEeccCCCCCCccCccccCCCCCCe
Q 044748 332 CMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVP-KSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKS 410 (602)
Q Consensus 332 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 410 (602)
..++++++++++++.+ +.+|..+. +.++.|++++|.++.++ ..+..+++|++|++++|.+.+. +.. ..+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l-~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCC-SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCE
T ss_pred cccCCccEEECCCCCC-CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCE
Confidence 3478899999999875 45565443 68999999999999664 6788999999999999977643 332 78999999
Q ss_pred EEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCccccc
Q 044748 411 IEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIRE 490 (602)
Q Consensus 411 L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~ 490 (602)
|++++|.+. .+|. .+..+++|++|++++|.+.+..+..+..+++|++|++++|+++.
T Consensus 82 L~Ls~N~l~-~l~~----------------------~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPL----------------------LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp EECCSSCCS-SCCC----------------------CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred EECCCCcCC-cCch----------------------hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence 999998765 4444 56788999999999999888877889999999999999999998
Q ss_pred Ccc-cccCCCCCcEEEccCCcccccchh-hhcCCCCceeecccccccCCchhhhcccccccccccceeecccc
Q 044748 491 VPE-SLGQLSSLESLVLSNNKLERLPES-FNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLRYCL 561 (602)
Q Consensus 491 l~~-~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~~~~~ 561 (602)
+|. .+..+++|+.|++++|+|+.+|.. |..+++|+.|++++|+++.+|..++..+ +|+.++++.|++.|.
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~-~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH-LLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-CCSEEECCSCCBCCS
T ss_pred cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccc-cCCeEEeCCCCccCc
Confidence 875 467899999999999999999875 6789999999999999999999998887 999999999999874
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=4.1e-20 Score=176.68 Aligned_cols=201 Identities=20% Similarity=0.222 Sum_probs=170.5
Q ss_pred CCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccc
Q 044748 293 KSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIR 372 (602)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~ 372 (602)
...+.++++++ .++ .+|... .+++++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 16 ~~~~~l~~~~~-~l~-----------------~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 74 (270)
T 2o6q_A 16 NNKNSVDCSSK-KLT-----------------AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74 (270)
T ss_dssp TTTTEEECTTS-CCS-----------------SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS
T ss_pred CCCCEEEccCC-CCC-----------------ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC
Confidence 35678888773 333 444433 357999999999977766668999999999999999999
Q ss_pred cCCcc-ccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhcc
Q 044748 373 EVPKS-LSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMV 451 (602)
Q Consensus 373 ~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 451 (602)
.++.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+. .+..+
T Consensus 75 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l 132 (270)
T 2o6q_A 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR----------------------VFDSL 132 (270)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT----------------------TTTTC
T ss_pred eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHH----------------------HhCcC
Confidence 88764 57899999999999987766666778999999999999987765554 67788
Q ss_pred CCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcc-cccCCCCCcEEEccCCcccccchh-hhcCCCCceeec
Q 044748 452 KNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE-SLGQLSSLESLVLSNNKLERLPES-FNQLSSLEYLQL 529 (602)
Q Consensus 452 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l 529 (602)
++|++|++++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|+.|++++|+++.+|.. +..+++|+.|++
T Consensus 133 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 999999999999887777778999999999999999998875 578899999999999999888864 888999999999
Q ss_pred ccccccC
Q 044748 530 FENSLEG 536 (602)
Q Consensus 530 ~~N~l~~ 536 (602)
++|++.+
T Consensus 213 ~~N~~~c 219 (270)
T 2o6q_A 213 QENPWDC 219 (270)
T ss_dssp CSSCBCC
T ss_pred cCCCeeC
Confidence 9999987
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=6e-22 Score=200.15 Aligned_cols=267 Identities=18% Similarity=0.174 Sum_probs=178.0
Q ss_pred EcCccccccccccccccccccEEeecCCCCccc----cccccccCCCCcEEEeecCC--CccccccCCCCCCCCCcchhc
Q 044748 252 TVDRTAIREVPESLGQLAILRRLKLTNCSGLES----ISSSIFKLKSLKSIVISHCS--NFKRFLEIPSGNTDGSTRIER 325 (602)
Q Consensus 252 ~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~~ 325 (602)
.++...+..++..+..+++|+.|++++|.+... +...+..+++|++|++++|. .++ ..+| ..+..
T Consensus 15 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~--~~~~-------~~~~~ 85 (386)
T 2ca6_A 15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK--DEIP-------EALRL 85 (386)
T ss_dssp SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCG--GGSH-------HHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccc--cchh-------HHHHH
Confidence 333344445555555566666666666654433 22234456666666666642 111 0000 00111
Q ss_pred cccccccCCCcccEEEEecCCCCc----cCCccccCCCCccEEEecCccccc-----CCcccccc---------ccCcEE
Q 044748 326 LASSNLCMFKSLKYLEIVDCQNFK----RLPDELGNLKVLKRLTIDGTAIRE-----VPKSLSQL---------AILRWL 387 (602)
Q Consensus 326 l~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~~l---------~~L~~L 387 (602)
+...+ ..+++|++|++++|.+.+ .++..+..+++|++|++++|.++. ++..+..+ ++|++|
T Consensus 86 l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 86 LLQAL-LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp HHHHH-TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred HHHHH-hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 11111 236788888888887665 355567788889999999888862 22333444 899999
Q ss_pred eccCCCCC-CccC---ccccCCCCCCeEEeccCCCccc-----cccCCCCCCCCCcchhhhhhhccccchhccCCCCeEE
Q 044748 388 KLTNCSGL-GRIS---SSIFKLKSLKSIEISNCSNFKR-----FLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLK 458 (602)
Q Consensus 388 ~l~~~~~~-~~~~---~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~ 458 (602)
++++|.+. ..++ ..+..+++|++|++++|.+... .+. .+..+++|+.|+
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~----------------------~l~~~~~L~~L~ 222 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE----------------------GLAYCQELKVLD 222 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT----------------------TGGGCTTCCEEE
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH----------------------HhhcCCCccEEE
Confidence 99999776 3344 4566788999999999876521 221 456788999999
Q ss_pred eeccccc----cCCChhhhCCcccceEeecCccccc-----Cccccc--CCCCCcEEEccCCcccc-----cchhh-hcC
Q 044748 459 IIDCQKF----KRLPNEIGNSKCLTVLIVKGTAIRE-----VPESLG--QLSSLESLVLSNNKLER-----LPESF-NQL 521 (602)
Q Consensus 459 l~~~~~~----~~~~~~l~~~~~L~~L~L~~n~l~~-----l~~~~~--~l~~L~~L~L~~n~l~~-----l~~~l-~~l 521 (602)
+++|.+. ..++..+..+++|++|++++|.++. ++..+. .+++|+.|++++|.++. +|..+ .++
T Consensus 223 Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l 302 (386)
T 2ca6_A 223 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302 (386)
T ss_dssp CCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC
T ss_pred CcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcC
Confidence 9999875 5677788899999999999999974 466663 48999999999999966 88876 668
Q ss_pred CCCceeecccccccCCc---hhhhcccccccc
Q 044748 522 SSLEYLQLFENSLEGIP---EYLRSLPSKLTS 550 (602)
Q Consensus 522 ~~L~~L~l~~N~l~~~~---~~l~~~~~~L~~ 550 (602)
++|+.|++++|++++.. ..+....+.++.
T Consensus 303 ~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~ 334 (386)
T 2ca6_A 303 PDLLFLELNGNRFSEEDDVVDEIREVFSTRGR 334 (386)
T ss_dssp TTCCEEECTTSBSCTTSHHHHHHHHHHHHHTC
T ss_pred CCceEEEccCCcCCcchhHHHHHHHHhhhcCc
Confidence 99999999999999844 344443334443
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=6.7e-20 Score=175.32 Aligned_cols=203 Identities=20% Similarity=0.242 Sum_probs=105.3
Q ss_pred CCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEe
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEI 413 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 413 (602)
+++|++|++++|.+. .++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 455666666655432 222 3555566666666666655543 4555566666666666554444444555556666666
Q ss_pred ccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcc
Q 044748 414 SNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE 493 (602)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~ 493 (602)
++|.+....+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.++.
T Consensus 117 ~~n~l~~~~~~----------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 117 VENQLQSLPDG----------------------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp TTSCCCCCCTT----------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcCCccCHH----------------------HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 65554433322 34445555555555555444444444555555555555555554442
Q ss_pred c-ccCCCCCcEEEccCCcccccch-hhhcCCCCceeecccccccCCchhhhcccccccccccceeeccccccccccchhh
Q 044748 494 S-LGQLSSLESLVLSNNKLERLPE-SFNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLRYCLKLDSNELSEI 571 (602)
Q Consensus 494 ~-~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~~~~~~L~~~~l~~~ 571 (602)
. +..+++|+.|++++|+++.++. .+..+++|+.|++++|++.+ .|+.|+.+++..+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----------------------~~~~l~~l~~~~n 232 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----------------------TCPGIRYLSEWIN 232 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC----------------------CTTTTHHHHHHHH
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc----------------------cCcHHHHHHHHHH
Confidence 2 3445555555555555544433 24455555555555555543 2445555666666
Q ss_pred hhhcccccccCc
Q 044748 572 VKGGWMKQSFDG 583 (602)
Q Consensus 572 ~~~~~~~~~~~~ 583 (602)
...+..+..+..
T Consensus 233 ~~~g~ip~~~~~ 244 (272)
T 3rfs_A 233 KHSGVVRNSAGS 244 (272)
T ss_dssp HTGGGBBCTTSC
T ss_pred hCCCcccCcccc
Confidence 666555544433
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=5.1e-20 Score=172.72 Aligned_cols=195 Identities=18% Similarity=0.158 Sum_probs=161.5
Q ss_pred CCcccEEEEecCCCCccCCccccCCCCccEEEecCcc-cccCCc-cccccccCcEEeccC-CCCCCccCccccCCCCCCe
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTA-IREVPK-SLSQLAILRWLKLTN-CSGLGRISSSIFKLKSLKS 410 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-i~~l~~-~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~ 410 (602)
.+++++|++++|.+.+..+..+..+++|++|++++|+ ++.++. .+..+++|++|++++ |.+.+..+..+..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 4589999999999877766689999999999999997 887775 688999999999998 7666555567889999999
Q ss_pred EEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCC---eEEeecc-ccccCCChhhhCCcccc-eEeecC
Q 044748 411 IEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLT---SLKIIDC-QKFKRLPNEIGNSKCLT-VLIVKG 485 (602)
Q Consensus 411 L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~L~~ 485 (602)
|++++|.+.+ +|. +..+++|+ +|++++| .+.+..+..+..+++|+ +|++++
T Consensus 110 L~l~~n~l~~-lp~-----------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-----------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp EEEEEECCCS-CCC-----------------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred EeCCCCCCcc-ccc-----------------------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 9999987665 442 34556676 9999999 77666666789999999 999999
Q ss_pred cccccCcccccCCCCCcEEEccCCc-ccccch-hhhcC-CCCceeecccccccCCchhhhcccccccccccce
Q 044748 486 TAIREVPESLGQLSSLESLVLSNNK-LERLPE-SFNQL-SSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSI 555 (602)
Q Consensus 486 n~l~~l~~~~~~l~~L~~L~L~~n~-l~~l~~-~l~~l-~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~ 555 (602)
|.++.+|......++|+.|++++|+ ++.+|. .|..+ ++|++|++++|+++.+|.. .++ +|+.|+++.
T Consensus 166 n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~-~L~~L~l~~ 235 (239)
T 2xwt_C 166 NGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLE-HLKELIARN 235 (239)
T ss_dssp CCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCT-TCSEEECTT
T ss_pred CCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--Hhc-cCceeeccC
Confidence 9999998655455899999999995 988865 58888 9999999999999998876 344 777766653
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=6.5e-20 Score=179.14 Aligned_cols=85 Identities=22% Similarity=0.246 Sum_probs=56.1
Q ss_pred hccCCCCeEEeeccccccCCChhhhCC---cccceEeecCcccccCcccccCCCCCcEEEccCCcccccchhhhcCCCCc
Q 044748 449 CMVKNLTSLKIIDCQKFKRLPNEIGNS---KCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPESFNQLSSLE 525 (602)
Q Consensus 449 ~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~ 525 (602)
..+++|++|++++|.+.+..|..+..+ ++|++|++++|+++.+|..+. ++|+.|++++|+|+.+|. +..+++|+
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~ 297 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVD 297 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCS
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCcc
Confidence 344556666666666555544444444 577777777777777776554 677777777777776654 56677777
Q ss_pred eeecccccccC
Q 044748 526 YLQLFENSLEG 536 (602)
Q Consensus 526 ~L~l~~N~l~~ 536 (602)
+|++++|+++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 77777777764
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=3.3e-20 Score=181.18 Aligned_cols=199 Identities=18% Similarity=0.183 Sum_probs=160.8
Q ss_pred CCcccEEEEecCCCCccCCccc--cCCCCccEEEecCcccccC-C----ccccccccCcEEeccCCCCCCccCccccCCC
Q 044748 334 FKSLKYLEIVDCQNFKRLPDEL--GNLKVLKRLTIDGTAIREV-P----KSLSQLAILRWLKLTNCSGLGRISSSIFKLK 406 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~i~~l-~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 406 (602)
.++|++|++++|.+.+..|..+ ..+++|++|++++|.++.. + ..+..+++|++|++++|.+.+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4679999999999988888777 8899999999999999842 2 2334689999999999998877778899999
Q ss_pred CCCeEEeccCCCccc--cccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCCh----hhhCCcccce
Q 044748 407 SLKSIEISNCSNFKR--FLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPN----EIGNSKCLTV 480 (602)
Q Consensus 407 ~L~~L~l~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~ 480 (602)
+|++|++++|++.+. ++. ...+..+++|++|++++|.+.. ++. .+..+++|++
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~--------------------~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMA--------------------ALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHS 228 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHT--------------------TSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSS
T ss_pred CCCEEECCCCCCccchhhhH--------------------HHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCE
Confidence 999999999987643 211 0034578899999999998753 232 2467899999
Q ss_pred EeecCcccccC-cccccCC---CCCcEEEccCCcccccchhhhcCCCCceeecccccccCCchhhhccccccccccccee
Q 044748 481 LIVKGTAIREV-PESLGQL---SSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSID 556 (602)
Q Consensus 481 L~L~~n~l~~l-~~~~~~l---~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~ 556 (602)
|++++|.++.+ |..+..+ ++|++|++++|+|+.+|..+. ++|++|++++|+|+++|. +..++ +|+.|+++.|
T Consensus 229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~-~L~~L~L~~N 304 (310)
T 4glp_A 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELP-EVDNLTLDGN 304 (310)
T ss_dssp EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCC-CCSCEECSST
T ss_pred EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCC-CccEEECcCC
Confidence 99999999976 7777776 699999999999999998763 899999999999998765 44454 7777666655
Q ss_pred e
Q 044748 557 L 557 (602)
Q Consensus 557 ~ 557 (602)
.
T Consensus 305 ~ 305 (310)
T 4glp_A 305 P 305 (310)
T ss_dssp T
T ss_pred C
Confidence 4
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=2.2e-19 Score=174.90 Aligned_cols=201 Identities=20% Similarity=0.263 Sum_probs=165.2
Q ss_pred cccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecC
Q 044748 289 IFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDG 368 (602)
Q Consensus 289 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 368 (602)
...+++|++|++++| .++ .++ . +..+++|++|++++|.+.+. +. +..+++|++|++++
T Consensus 37 ~~~l~~L~~L~l~~~-~i~-----------------~l~-~-~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVT-----------------TIE-G-VQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSG 94 (308)
T ss_dssp HHHHHTCCEEECTTS-CCC-----------------CCT-T-GGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCS
T ss_pred HHHcCCcCEEEeeCC-Ccc-----------------Cch-h-hhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccC
Confidence 456789999999886 333 333 1 23488999999999986554 34 88999999999999
Q ss_pred cccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccch
Q 044748 369 TAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDL 448 (602)
Q Consensus 369 n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 448 (602)
|.++.++ .+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.... .+
T Consensus 95 n~l~~~~-~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~------------------------~l 147 (308)
T 1h6u_A 95 NPLKNVS-AIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNIS------------------------PL 147 (308)
T ss_dssp CCCSCCG-GGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCG------------------------GG
T ss_pred CcCCCch-hhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCc------------------------cc
Confidence 9999876 58889999999999997755 44 3889999999999998765422 25
Q ss_pred hccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccchhhhcCCCCceee
Q 044748 449 CMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQ 528 (602)
Q Consensus 449 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~ 528 (602)
..+++|+.|++++|.+.+..+ +..+++|++|++++|.++.++. +..+++|+.|++++|+++.++. +..+++|++|+
T Consensus 148 ~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~ 223 (308)
T 1h6u_A 148 AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVT 223 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEE
T ss_pred cCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEE
Confidence 678899999999998765433 8899999999999999999875 8899999999999999988874 88999999999
Q ss_pred cccccccCCchhhh
Q 044748 529 LFENSLEGIPEYLR 542 (602)
Q Consensus 529 l~~N~l~~~~~~l~ 542 (602)
+++|++++.|..+.
T Consensus 224 l~~N~i~~~~~~~~ 237 (308)
T 1h6u_A 224 LTNQTITNQPVFYN 237 (308)
T ss_dssp EEEEEEECCCEECC
T ss_pred ccCCeeecCCeeec
Confidence 99999998776543
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=2e-19 Score=168.69 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=38.1
Q ss_pred cccceEeecCcc-cccCc-ccccCC-CCCcEEEccCCcccccchhhhcCCCCceeecccc
Q 044748 476 KCLTVLIVKGTA-IREVP-ESLGQL-SSLESLVLSNNKLERLPESFNQLSSLEYLQLFEN 532 (602)
Q Consensus 476 ~~L~~L~L~~n~-l~~l~-~~~~~l-~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N 532 (602)
++|++|++++|+ ++.+| ..+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 567777777774 77664 446666 7777777777777777654 5667777777765
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=3e-19 Score=173.88 Aligned_cols=192 Identities=19% Similarity=0.233 Sum_probs=165.8
Q ss_pred CCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEe
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEI 413 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 413 (602)
+++|++|++++|.+.. ++ .+..+++|++|++++|.++.++. +..+++|++|++++|.+.+ ++ .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 7899999999987544 44 58889999999999999998887 8999999999999997654 44 6889999999999
Q ss_pred ccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcc
Q 044748 414 SNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE 493 (602)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~ 493 (602)
++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.++.++.
T Consensus 115 ~~n~l~~~-~-----------------------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~ 168 (308)
T 1h6u_A 115 TSTQITDV-T-----------------------PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP 168 (308)
T ss_dssp TTSCCCCC-G-----------------------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCCCc-h-----------------------hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh
Confidence 99976542 2 35678999999999998766543 8899999999999999999876
Q ss_pred cccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCchhhhcccccccccccceeeccc
Q 044748 494 SLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLRYC 560 (602)
Q Consensus 494 ~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~~~~ 560 (602)
+..+++|+.|++++|+++.++. +..+++|++|++++|+++++++ +..++ +|+.|+++.|...+
T Consensus 169 -l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~-~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTS-NLFIVTLTNQTITN 231 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCT-TCCEEEEEEEEEEC
T ss_pred -hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCC-CCCEEEccCCeeec
Confidence 8999999999999999988875 8899999999999999999764 66666 99999999877654
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=3.8e-19 Score=167.94 Aligned_cols=178 Identities=19% Similarity=0.265 Sum_probs=136.9
Q ss_pred CcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCC-ccccccccCcEEeccCCCCCCccCccccCCCCCCeEEe
Q 044748 335 KSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVP-KSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEI 413 (602)
Q Consensus 335 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 413 (602)
...++++++++.+ ..+|..+. +.+++|++++|.++.++ ..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l-~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSL-DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCC-SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCc-cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4567888887664 45555444 57888888888888655 35778888888888888777766667788888888888
Q ss_pred ccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcc
Q 044748 414 SNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE 493 (602)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~ 493 (602)
++|.+....+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.++.
T Consensus 91 ~~n~l~~~~~~----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 91 ANNQLASLPLG----------------------VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp TTSCCCCCCTT----------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcccccChh----------------------HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence 88877654444 56677888888888888776666667788888888888888887775
Q ss_pred -cccCCCCCcEEEccCCcccccch-hhhcCCCCceeecccccccCC
Q 044748 494 -SLGQLSSLESLVLSNNKLERLPE-SFNQLSSLEYLQLFENSLEGI 537 (602)
Q Consensus 494 -~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~N~l~~~ 537 (602)
.+..+++|+.|++++|+++.++. .+..+++|+.|++++|++++-
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 57788888888888888877765 577788888888888888773
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=1.9e-19 Score=172.11 Aligned_cols=178 Identities=17% Similarity=0.192 Sum_probs=93.1
Q ss_pred hhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcE
Q 044748 218 LCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKS 297 (602)
Q Consensus 218 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 297 (602)
...+++|+.|++.+|.+... ..+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+.+..+..+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 34455666666666554322 23555666666666666665543 3555666666666666554444444455555555
Q ss_pred EEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCcc
Q 044748 298 IVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKS 377 (602)
Q Consensus 298 L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~ 377 (602)
|++++|. ++ .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.++..
T Consensus 114 L~L~~n~-l~-----------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 114 LVLVENQ-LQ-----------------SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp EECTTSC-CC-----------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred EECCCCc-CC-----------------ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 5555531 11 23333333355555555555554444444445555555566555555544432
Q ss_pred -ccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccC
Q 044748 378 -LSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNC 416 (602)
Q Consensus 378 -~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (602)
+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 345555555555555554444444455555555555555
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=2.4e-20 Score=186.43 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=26.4
Q ss_pred CCccEEEecCccccc-----CCccccccc-cCcEEeccCCCCCCccCc----cccCC-CCCCeEEeccCCC
Q 044748 359 KVLKRLTIDGTAIRE-----VPKSLSQLA-ILRWLKLTNCSGLGRISS----SIFKL-KSLKSIEISNCSN 418 (602)
Q Consensus 359 ~~L~~L~l~~n~i~~-----l~~~~~~l~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~ 418 (602)
++|++|++++|.++. ++..+...+ +|++|++++|.+.+..+. .+..+ ++|++|++++|.+
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence 355555555555542 122223333 555555555544333222 22223 3555555555543
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=3.8e-20 Score=183.37 Aligned_cols=181 Identities=18% Similarity=0.195 Sum_probs=111.3
Q ss_pred CCcccEEEEecCCCCccCCccccCCCCccEEEecCc-ccc--cCCccccccccCcEEeccCC-CCCCc-cCccccCCC-C
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGT-AIR--EVPKSLSQLAILRWLKLTNC-SGLGR-ISSSIFKLK-S 407 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~i~--~l~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~~~-~ 407 (602)
+++|++|++++|.+.+..+..+..+++|++|++++| .++ .++..+..+++|++|++++| .+.+. ++..+..++ +
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 555666666665554444555566667777777766 455 24555666677777777777 54432 455556667 7
Q ss_pred CCeEEeccCC--Cc-cccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccc-cccCCChhhhCCcccceEee
Q 044748 408 LKSIEISNCS--NF-KRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQ-KFKRLPNEIGNSKCLTVLIV 483 (602)
Q Consensus 408 L~~L~l~~~~--~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~L 483 (602)
|++|++++|. +. ..++. .+..+++|+.|++++|. +.+..+..+..+++|++|++
T Consensus 197 L~~L~l~~~~~~~~~~~l~~----------------------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLST----------------------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHH----------------------HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred CCEEEeCCCcccCCHHHHHH----------------------HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence 7777777763 22 22222 45566777777777777 44455566777788888888
Q ss_pred cCcc-cc-cCcccccCCCCCcEEEccCCcccccch-hhhcC-CCCceeecccccccC-Cchh
Q 044748 484 KGTA-IR-EVPESLGQLSSLESLVLSNNKLERLPE-SFNQL-SSLEYLQLFENSLEG-IPEY 540 (602)
Q Consensus 484 ~~n~-l~-~l~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l-~~L~~L~l~~N~l~~-~~~~ 540 (602)
++|. ++ .....+..+++|+.|++++| + +. .+..+ .+++.|++++|++++ .|..
T Consensus 255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i---~~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 255 SRCYDIIPETLLELGEIPTLKTLQVFGI-V---PDGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTS-S---CTTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred CCCCCCCHHHHHHHhcCCCCCEEeccCc-c---CHHHHHHHHhhCcceEEecccCccccCCc
Confidence 8874 22 11124677888888888888 3 32 23333 236666788888887 5443
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=2e-18 Score=162.96 Aligned_cols=178 Identities=20% Similarity=0.270 Sum_probs=151.1
Q ss_pred CCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhh
Q 044748 359 KVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIER 438 (602)
Q Consensus 359 ~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (602)
...++++++++.++.+|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.+....+.
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------- 77 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG-------------- 77 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT--------------
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHh--------------
Confidence 356789999999999887654 7899999999988877777888999999999999887765554
Q ss_pred hhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCccc-ccCCCCCcEEEccCCcccccch-
Q 044748 439 LASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPES-LGQLSSLESLVLSNNKLERLPE- 516 (602)
Q Consensus 439 l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~l~~l~~- 516 (602)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.++.. +..+++|+.|++++|+|+.+|.
T Consensus 78 --------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 149 (251)
T 3m19_A 78 --------VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG 149 (251)
T ss_dssp --------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred --------HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH
Confidence 577889999999999998877777888999999999999999988754 6789999999999999988876
Q ss_pred hhhcCCCCceeecccccccCCch-hhhcccccccccccceeecccc
Q 044748 517 SFNQLSSLEYLQLFENSLEGIPE-YLRSLPSKLTSLNLSIDLRYCL 561 (602)
Q Consensus 517 ~l~~l~~L~~L~l~~N~l~~~~~-~l~~~~~~L~~L~l~~~~~~~~ 561 (602)
.|..+++|++|++++|+++.+|. .+..++ +|+.|+++.|.+.|.
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLG-KLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSCCBCTT
T ss_pred HcCcCcCCCEEECCCCcCCccCHHHHhCCC-CCCEEEeeCCceeCC
Confidence 58889999999999999999665 455555 899999999988875
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=7e-20 Score=181.46 Aligned_cols=198 Identities=16% Similarity=0.221 Sum_probs=129.0
Q ss_pred CcccccccCCCCcccccchhcc--ccccEEeeeccCCCccCCcccCCCCCCcEEEcCcccccc--ccccccccccccEEe
Q 044748 200 LPSIKIIHCPNIESLPSSLCMF--KSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIRE--VPESLGQLAILRRLK 275 (602)
Q Consensus 200 L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~L~ 275 (602)
++.++++++.+. +..+..+ +.++.|++.+|.+.+..+. +..+++|+.|++++|.++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 556666665443 3344445 7788888888776665544 4567888888888887762 666677888888888
Q ss_pred ecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecC-CCCcc-CCc
Q 044748 276 LTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDC-QNFKR-LPD 353 (602)
Q Consensus 276 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~-~~~~~-~~~ 353 (602)
+++|.+....+..+..+++|++|++++|..++. ..++.. ...+++|++|++++| .+.+. ++.
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~---------------~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE---------------FALQTL-LSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH---------------HHHHHH-HHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH---------------HHHHHH-HhcCCCCCEEcCCCCCCcChHHHHH
Confidence 888876666667777788888888887744440 012222 223677777777777 54432 344
Q ss_pred cccCCC-CccEEEecCcc--cc--cCCccccccccCcEEeccCCC-CCCccCccccCCCCCCeEEeccCC
Q 044748 354 ELGNLK-VLKRLTIDGTA--IR--EVPKSLSQLAILRWLKLTNCS-GLGRISSSIFKLKSLKSIEISNCS 417 (602)
Q Consensus 354 ~~~~~~-~L~~L~l~~n~--i~--~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~ 417 (602)
.+..++ +|++|++++|. ++ .++..+..+++|+.|++++|. +.+..+..+..+++|++|++++|.
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 566667 77777777763 32 445555667777777777776 344455556666777777777664
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.77 E-value=1e-19 Score=181.89 Aligned_cols=256 Identities=12% Similarity=0.057 Sum_probs=157.7
Q ss_pred EEEcCcccccc-ccccccccccccEEeecCCCCccccc----cccccCC-CCcEEEeecCCCccccccCCCCCCCCCcch
Q 044748 250 RLTVDRTAIRE-VPESLGQLAILRRLKLTNCSGLESIS----SSIFKLK-SLKSIVISHCSNFKRFLEIPSGNTDGSTRI 323 (602)
Q Consensus 250 ~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 323 (602)
..+++.|.++. +|+.+...++|+.|++++|.+....+ ..+..++ +|++|++++| .++.. ..
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~------------~~ 68 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFK------------NS 68 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGS------------CH
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHH------------HH
Confidence 35677888874 45544555569999999987665544 5566777 8888988886 23300 00
Q ss_pred hccccccccCCCcccEEEEecCCCCccCCcc----ccCC-CCccEEEecCcccccCCc-c----ccc-cccCcEEeccCC
Q 044748 324 ERLASSNLCMFKSLKYLEIVDCQNFKRLPDE----LGNL-KVLKRLTIDGTAIREVPK-S----LSQ-LAILRWLKLTNC 392 (602)
Q Consensus 324 ~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~n~i~~l~~-~----~~~-l~~L~~L~l~~~ 392 (602)
..+.......+++|++|++++|.+.+..+.. +..+ ++|++|++++|.++..+. . +.. .++|++|++++|
T Consensus 69 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 69 DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred HHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 1112211221378888888888865554443 3334 788888888888875542 2 222 357888888888
Q ss_pred CCCCc----cCccccCCC-CCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhcc-CCCCeEEeecccccc
Q 044748 393 SGLGR----ISSSIFKLK-SLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMV-KNLTSLKIIDCQKFK 466 (602)
Q Consensus 393 ~~~~~----~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 466 (602)
.+... ++..+..++ +|++|++++|.+....+. .+...+..+ ++|++|++++|.+.+
T Consensus 149 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~------------------~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 149 DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCA------------------ELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH------------------HHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHH------------------HHHHHHHhCCCCCCEEECCCCCCCh
Confidence 66532 333444554 788888888766544332 001123334 478888888877665
Q ss_pred C----CChhhhC-CcccceEeecCcccccCc-----ccccCCCCCcEEEccCCcccc--------cchhhhcCCCCceee
Q 044748 467 R----LPNEIGN-SKCLTVLIVKGTAIREVP-----ESLGQLSSLESLVLSNNKLER--------LPESFNQLSSLEYLQ 528 (602)
Q Consensus 467 ~----~~~~l~~-~~~L~~L~L~~n~l~~l~-----~~~~~l~~L~~L~L~~n~l~~--------l~~~l~~l~~L~~L~ 528 (602)
. ++..+.. .++|++|++++|.++..+ ..+..+++|+.|++++|.+.. ++..+..+++|++||
T Consensus 211 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~Ld 290 (362)
T 3goz_A 211 KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290 (362)
T ss_dssp SCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEEC
T ss_pred hHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEe
Confidence 3 3334444 347888888888776543 234666778888888887432 233455667777788
Q ss_pred cccccccC
Q 044748 529 LFENSLEG 536 (602)
Q Consensus 529 l~~N~l~~ 536 (602)
+++|++..
T Consensus 291 L~~N~l~~ 298 (362)
T 3goz_A 291 KNGKEIHP 298 (362)
T ss_dssp TTSCBCCG
T ss_pred cCCCcCCC
Confidence 88887765
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=3.4e-20 Score=187.27 Aligned_cols=252 Identities=15% Similarity=0.102 Sum_probs=122.1
Q ss_pred cccccccCCCCCcccccccCCCCcccc----cchhccccccEEeeeccCC---CccCCccc-------CCCCCCcEEEcC
Q 044748 189 SLPINMFSFKSLPSIKIIHCPNIESLP----SSLCMFKSLTSLEIVDCQN---FKRLPDEL-------GNLKALQRLTVD 254 (602)
Q Consensus 189 ~l~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~---~~~~~~~~-------~~l~~L~~L~l~ 254 (602)
.++..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+ .+.+|..+ ..+++|+.|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 344444455566666666665444322 2244556666666665432 22223222 455666666666
Q ss_pred cccccc-----ccccccccccccEEeecCCCCcccccccc----ccCCCCcEEEeecCCCccccccCCCCCCCCCcchhc
Q 044748 255 RTAIRE-----VPESLGQLAILRRLKLTNCSGLESISSSI----FKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIER 325 (602)
Q Consensus 255 ~n~l~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (602)
+|.++. ++..+..+++|+.|++++|.+....+..+ ..+. . ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~--------~---------------------~~ 153 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA--------V---------------------NK 153 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHH--------H---------------------HH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHh--------h---------------------hh
Confidence 666553 44455556666666666665432222222 1120 0 00
Q ss_pred cccccccCCCcccEEEEecCCCCc-cCC---ccccCCCCccEEEecCcccc------cCCccccccccCcEEeccCCCCC
Q 044748 326 LASSNLCMFKSLKYLEIVDCQNFK-RLP---DELGNLKVLKRLTIDGTAIR------EVPKSLSQLAILRWLKLTNCSGL 395 (602)
Q Consensus 326 l~~~~~~~~~~L~~L~l~~~~~~~-~~~---~~~~~~~~L~~L~l~~n~i~------~l~~~~~~l~~L~~L~l~~~~~~ 395 (602)
.....++|++|++++|.+.. .++ ..+..+++|++|++++|.++ .++..+..+++|+.|++++|.+.
T Consensus 154 ----~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 154 ----KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp ----HHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred ----hcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 00000444555555544431 122 23334555555555555554 11224455556666666665543
Q ss_pred ----CccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccch--hccCCCCeEEeecccccc---
Q 044748 396 ----GRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDL--CMVKNLTSLKIIDCQKFK--- 466 (602)
Q Consensus 396 ----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~L~~L~l~~~~~~~--- 466 (602)
..++..+..+++|++|++++|.+...... .++..+ +.+++|+.|++++|.+..
T Consensus 230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~------------------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~ 291 (386)
T 2ca6_A 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAA------------------AVVDAFSKLENIGLQTLRLQYNEIELDAV 291 (386)
T ss_dssp HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH------------------HHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred cHHHHHHHHHHccCCCcCEEECCCCCCchhhHH------------------HHHHHHhhccCCCeEEEECcCCcCCHHHH
Confidence 33455555566666666666654432110 000022 225666666666666555
Q ss_pred -CCChhh-hCCcccceEeecCcccccC
Q 044748 467 -RLPNEI-GNSKCLTVLIVKGTAIREV 491 (602)
Q Consensus 467 -~~~~~l-~~~~~L~~L~L~~n~l~~l 491 (602)
.++..+ ..+++|++|++++|.++..
T Consensus 292 ~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 292 RTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 355555 4467777777777777643
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=2.3e-17 Score=163.81 Aligned_cols=239 Identities=17% Similarity=0.195 Sum_probs=120.7
Q ss_pred cEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccc-cccccccccEEeecCCCCcccccc-ccccCCCCcEEEeec
Q 044748 225 TSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPE-SLGQLAILRRLKLTNCSGLESISS-SIFKLKSLKSIVISH 302 (602)
Q Consensus 225 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~ 302 (602)
++++-++++++ .+|..+ .++++.|++++|+|+.+|. .|.++++|++|++++|.+.+.++. .+.++++++++...+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34444443332 344433 2456667777776666664 356666666666666655554432 344555555444433
Q ss_pred CCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecC-cccccCCcccccc
Q 044748 303 CSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDG-TAIREVPKSLSQL 381 (602)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-n~i~~l~~~~~~l 381 (602)
++.++ .++...+..+++|++|++++|.+....+..+....++..+++.+ +.+..++.
T Consensus 89 ~N~l~-----------------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~----- 146 (350)
T 4ay9_X 89 ANNLL-----------------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER----- 146 (350)
T ss_dssp ETTCC-----------------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT-----
T ss_pred CCccc-----------------ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc-----
Confidence 32222 33333333345555555555544333333333333444444433 33333331
Q ss_pred ccCcEEeccCCCCCCccCccccCC-CCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEee
Q 044748 382 AILRWLKLTNCSGLGRISSSIFKL-KSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKII 460 (602)
Q Consensus 382 ~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 460 (602)
..+..+ ..++.|++++|.+.. ++. ......+++++++.
T Consensus 147 ------------------~~f~~~~~~l~~L~L~~N~i~~-i~~----------------------~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 147 ------------------NSFVGLSFESVILWLNKNGIQE-IHN----------------------SAFNGTQLDELNLS 185 (350)
T ss_dssp ------------------TSSTTSBSSCEEEECCSSCCCE-ECT----------------------TSSTTEEEEEEECT
T ss_pred ------------------cchhhcchhhhhhccccccccC-CCh----------------------hhccccchhHHhhc
Confidence 122222 234445555544332 111 11122345555555
Q ss_pred ccccccCCC-hhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCc-ccccchhhhcCCCCceeecccc
Q 044748 461 DCQKFKRLP-NEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNK-LERLPESFNQLSSLEYLQLFEN 532 (602)
Q Consensus 461 ~~~~~~~~~-~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~L~l~~N 532 (602)
+++..+.+| ..+..+++|++|++++|+|+.+|. ..+.+|+.|.+.++. ++.+|. +..+++|+.+++.++
T Consensus 186 ~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp TCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred cCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 444444443 345677777777777777777765 335566666666654 577763 666777777777654
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.9e-17 Score=159.66 Aligned_cols=173 Identities=22% Similarity=0.300 Sum_probs=149.7
Q ss_pred CCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEe
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEI 413 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 413 (602)
+++|++|++++|.+.+ ++ .+..+++|++|++++|.++.++. +..+++|++|++++|.+.+ ++ .+..+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred cCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 7889999999987644 33 48889999999999999998877 8899999999999997654 44 4889999999999
Q ss_pred ccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcc
Q 044748 414 SNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE 493 (602)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~ 493 (602)
++|.+... + .+..+++|+.|++++|.+.+. ..+..+++|++|++++|.++.++.
T Consensus 120 ~~n~i~~~-~-----------------------~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 120 EHNGISDI-N-----------------------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp TTSCCCCC-G-----------------------GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CCCcCCCC-h-----------------------hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 99976652 2 467889999999999987765 568899999999999999998876
Q ss_pred cccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCch
Q 044748 494 SLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPE 539 (602)
Q Consensus 494 ~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~ 539 (602)
+..+++|+.|++++|+++.++. +..+++|+.|++++|+++..|.
T Consensus 174 -l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred -hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCcc
Confidence 8999999999999999998875 8899999999999999987554
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=1.5e-17 Score=173.74 Aligned_cols=188 Identities=19% Similarity=0.215 Sum_probs=154.4
Q ss_pred CCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccc
Q 044748 293 KSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIR 372 (602)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~ 372 (602)
.+++.|++++| .++ .+|... +++|++|++++|.+. .+| ..+++|++|++++|.++
T Consensus 59 ~~L~~L~Ls~n-~L~-----------------~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~ 113 (571)
T 3cvr_A 59 NQFSELQLNRL-NLS-----------------SLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS 113 (571)
T ss_dssp TTCSEEECCSS-CCS-----------------CCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS
T ss_pred CCccEEEeCCC-CCC-----------------ccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC
Confidence 38999999985 344 444433 468999999999865 566 45789999999999999
Q ss_pred cCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccC
Q 044748 373 EVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVK 452 (602)
Q Consensus 373 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 452 (602)
.+|. +.. +|+.|++++|.+.+ +|. .+++|++|++++|.+.. +|. .++
T Consensus 114 ~ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-------------------------~l~ 160 (571)
T 3cvr_A 114 TLPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE-------------------------LPT 160 (571)
T ss_dssp CCCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-------------------------CCT
T ss_pred Ccch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC-------------------------cCC
Confidence 9987 554 99999999998766 666 68999999999998764 332 357
Q ss_pred CCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCC-------cEEEccCCcccccchhhhcCCCCc
Q 044748 453 NLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSL-------ESLVLSNNKLERLPESFNQLSSLE 525 (602)
Q Consensus 453 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L-------~~L~L~~n~l~~l~~~l~~l~~L~ 525 (602)
+|+.|++++|.+.+ +|. +. ++|+.|++++|.|+.+|. +.. +| +.|++++|+|+.+|..+..+++|+
T Consensus 161 ~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~ 233 (571)
T 3cvr_A 161 SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTC 233 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTE
T ss_pred CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCC
Confidence 89999999998776 665 54 899999999999999998 655 78 999999999999999888899999
Q ss_pred eeecccccccC-Cchhhhccc
Q 044748 526 YLQLFENSLEG-IPEYLRSLP 545 (602)
Q Consensus 526 ~L~l~~N~l~~-~~~~l~~~~ 545 (602)
.|++++|++++ +|..+..+.
T Consensus 234 ~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 234 TIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp EEECCSSSCCHHHHHHHHHHH
T ss_pred EEEeeCCcCCCcCHHHHHHhh
Confidence 99999999998 888777665
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.5e-17 Score=150.53 Aligned_cols=154 Identities=16% Similarity=0.229 Sum_probs=107.2
Q ss_pred cCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcc
Q 044748 356 GNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTR 435 (602)
Q Consensus 356 ~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 435 (602)
..+++|++|++++|.++.++ .+..+++|++|++++|.+ ..+ ..+..+++|++|++++|.+....+.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~l~~n~l~~~~~~----------- 106 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-TNY-NPISGLSNLERLRIMGKDVTSDKIP----------- 106 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC-SCC-GGGTTCTTCCEEEEECTTCBGGGSC-----------
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC-Ccc-hhhhcCCCCCEEEeECCccCcccCh-----------
Confidence 44556777777777776666 566677777777777633 222 3566677777777777766654444
Q ss_pred hhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcc-cccCcccccCCCCCcEEEccCCccccc
Q 044748 436 IERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTA-IREVPESLGQLSSLESLVLSNNKLERL 514 (602)
Q Consensus 436 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~-l~~l~~~~~~l~~L~~L~L~~n~l~~l 514 (602)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|. ++.+| .+..+++|+.|++++|+++.+
T Consensus 107 -----------~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 107 -----------NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp -----------CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC
T ss_pred -----------hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh
Confidence 45566777777777777766666777788888888888887 77776 577888888888888888777
Q ss_pred chhhhcCCCCceeecccccccC
Q 044748 515 PESFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 515 ~~~l~~l~~L~~L~l~~N~l~~ 536 (602)
+ .+..+++|+.|++++|++..
T Consensus 175 ~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp T-TGGGCSSCCEEEECBC----
T ss_pred H-HhccCCCCCEEEeeCcccCC
Confidence 6 67778888888888888754
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=2.8e-17 Score=171.64 Aligned_cols=177 Identities=25% Similarity=0.284 Sum_probs=147.8
Q ss_pred CcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEec
Q 044748 335 KSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEIS 414 (602)
Q Consensus 335 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 414 (602)
.+++.|++++|.+.+ +|..+ +++|++|++++|.++.+| ..+++|+.|++++|.+.+ +|. +.. +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 489999999998655 66655 378999999999999998 457999999999998766 776 544 99999999
Q ss_pred cCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCccc
Q 044748 415 NCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPES 494 (602)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~ 494 (602)
+|.+.+ +|. .+++|+.|++++|.+.+ +|. .+++|++|++++|.++.+|.
T Consensus 129 ~N~l~~-lp~-------------------------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~- 177 (571)
T 3cvr_A 129 NNQLTM-LPE-------------------------LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE- 177 (571)
T ss_dssp SSCCSC-CCC-------------------------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-
T ss_pred CCcCCC-CCC-------------------------cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-
Confidence 997765 332 46799999999999776 554 57899999999999999998
Q ss_pred ccCCCCCcEEEccCCcccccchhhhcCCCC-------ceeecccccccCCchhhhcccccccccccceeec
Q 044748 495 LGQLSSLESLVLSNNKLERLPESFNQLSSL-------EYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLR 558 (602)
Q Consensus 495 ~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L-------~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~~ 558 (602)
+. ++|+.|++++|+|+.+|. +.. +| +.|++++|+|+.+|..+..++ +|+.|+++.|..
T Consensus 178 l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~-~L~~L~L~~N~l 242 (571)
T 3cvr_A 178 LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLD-PTCTIILEDNPL 242 (571)
T ss_dssp CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSC-TTEEEECCSSSC
T ss_pred hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCC-CCCEEEeeCCcC
Confidence 65 899999999999999988 544 67 999999999999999998876 899988876543
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=4.9e-17 Score=156.76 Aligned_cols=172 Identities=20% Similarity=0.229 Sum_probs=148.1
Q ss_pred ccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCc
Q 044748 355 LGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGT 434 (602)
Q Consensus 355 ~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 434 (602)
...+++|++|++++|.++.++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.. ++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~----------- 106 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS----------- 106 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-----------
T ss_pred hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-----------
Confidence 456789999999999999886 48889999999999997765433 8899999999999987654 22
Q ss_pred chhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCccccc
Q 044748 435 RIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERL 514 (602)
Q Consensus 435 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l 514 (602)
.+..+++|+.|++++|.+.+. ..+..+++|++|++++|.++.+ ..+..+++|+.|++++|+++.+
T Consensus 107 ------------~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 107 ------------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp ------------GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCC
T ss_pred ------------hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccc
Confidence 467889999999999987664 4588899999999999999998 5789999999999999999888
Q ss_pred chhhhcCCCCceeecccccccCCchhhhcccccccccccceeecc
Q 044748 515 PESFNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLRY 559 (602)
Q Consensus 515 ~~~l~~l~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~~~ 559 (602)
+. +..+++|++|++++|.++.+|. +..++ +|+.|+++.|...
T Consensus 172 ~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~-~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 172 VP-LAGLTKLQNLYLSKNHISDLRA-LAGLK-NLDVLELFSQECL 213 (291)
T ss_dssp GG-GTTCTTCCEEECCSSCCCBCGG-GTTCT-TCSEEEEEEEEEE
T ss_pred hh-hcCCCccCEEECCCCcCCCChh-hccCC-CCCEEECcCCccc
Confidence 76 8899999999999999999864 77776 9999999887643
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=7.3e-17 Score=149.65 Aligned_cols=152 Identities=20% Similarity=0.178 Sum_probs=124.1
Q ss_pred ccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhh
Q 044748 361 LKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLA 440 (602)
Q Consensus 361 L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 440 (602)
.+.++.+++.++.+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+....+.
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~---------------- 82 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG---------------- 82 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------------
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh----------------
Confidence 5567788888887776443 7888888888877777677778888888888888876433322
Q ss_pred hhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccch-hhh
Q 044748 441 SFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPE-SFN 519 (602)
Q Consensus 441 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~-~l~ 519 (602)
.+..+++|+.|++++|.+....+..+..+++|++|++++|.++.+|..+..+++|+.|++++|+|+.++. .+.
T Consensus 83 ------~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 156 (229)
T 3e6j_A 83 ------VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156 (229)
T ss_dssp ------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTT
T ss_pred ------hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHh
Confidence 4567788888888888877766667788999999999999999999889999999999999999988875 488
Q ss_pred cCCCCceeecccccccC
Q 044748 520 QLSSLEYLQLFENSLEG 536 (602)
Q Consensus 520 ~l~~L~~L~l~~N~l~~ 536 (602)
.+++|+.|++++|++++
T Consensus 157 ~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 157 RLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TCTTCCEEECTTSCBCT
T ss_pred CCCCCCEEEeeCCCccC
Confidence 89999999999999987
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=5.2e-17 Score=161.93 Aligned_cols=174 Identities=21% Similarity=0.183 Sum_probs=127.4
Q ss_pred cEEEEecCCCCccCCccccCCCCccEEEecCcccccCCcc-cc-ccccCcEEeccCCCCCCccCccccCCCCCCeEEecc
Q 044748 338 KYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKS-LS-QLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISN 415 (602)
Q Consensus 338 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (602)
+.++++++.+ +.+|..+. +.++.|++++|.++.++.. +. .+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l-~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQL-PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCC-SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCc-CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 5677777663 44555433 4578888888888866543 44 788888888888877666666778888888888888
Q ss_pred CCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccc
Q 044748 416 CSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESL 495 (602)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~ 495 (602)
|.+....+. .+..+++|+.|++++|.+....+..+..+++|++|+|++|.++.+|..+
T Consensus 98 N~l~~~~~~----------------------~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 98 NHLHTLDEF----------------------LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp SCCCEECTT----------------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred CcCCcCCHH----------------------HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 876654443 5667788888888888877777777788888888888888888777554
Q ss_pred ----cCCCCCcEEEccCCcccccch-hhhcCCC--CceeecccccccC
Q 044748 496 ----GQLSSLESLVLSNNKLERLPE-SFNQLSS--LEYLQLFENSLEG 536 (602)
Q Consensus 496 ----~~l~~L~~L~L~~n~l~~l~~-~l~~l~~--L~~L~l~~N~l~~ 536 (602)
..+++|+.|+|++|+|+.+|. .+..++. ++.|++++|++.+
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 457888888888888877774 4667776 4778888888876
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=9.6e-17 Score=146.78 Aligned_cols=178 Identities=17% Similarity=0.179 Sum_probs=126.7
Q ss_pred cEEEEecCCCCccCCccccCCCCccEEEecCcccccCCc-cccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccC
Q 044748 338 KYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPK-SLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNC 416 (602)
Q Consensus 338 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (602)
+.++.+++.+ ..+|..+ .+++++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l-~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGR-TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCc-cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 3455555443 3333322 3577888888888776654 3567788888888887666544455677788888888887
Q ss_pred CCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCccc-c
Q 044748 417 SNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPES-L 495 (602)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~-~ 495 (602)
.+....+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.++.. +
T Consensus 87 ~l~~~~~~----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 144 (208)
T 2o6s_A 87 QLQSLPNG----------------------VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144 (208)
T ss_dssp CCCCCCTT----------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cCCccCHh----------------------HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh
Confidence 66543333 456777888888888877766666677888888888888888877754 6
Q ss_pred cCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccC-Cchhhhcccc
Q 044748 496 GQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEG-IPEYLRSLPS 546 (602)
Q Consensus 496 ~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~-~~~~l~~~~~ 546 (602)
..+++|+.|++++|.+. ..+++|+.|+++.|++++ +|+++..++.
T Consensus 145 ~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 145 DRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 77888899999888763 245678888888888887 8877766663
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=1.7e-16 Score=146.19 Aligned_cols=151 Identities=18% Similarity=0.246 Sum_probs=106.8
Q ss_pred cEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhh
Q 044748 362 KRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLAS 441 (602)
Q Consensus 362 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (602)
+.++++++.++.+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+....|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~----------------- 74 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD----------------- 74 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT-----------------
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH-----------------
Confidence 356666666666665433 5667777777665544444566667777777777666555444
Q ss_pred hccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccC-cccccCCCCCcEEEccCCcccccch-hhh
Q 044748 442 FKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREV-PESLGQLSSLESLVLSNNKLERLPE-SFN 519 (602)
Q Consensus 442 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~l~~-~l~ 519 (602)
.+..+++|++|++++|.+....+..+..+++|++|++++|.++.+ |..|..+++|+.|++++|+|+.++. .|.
T Consensus 75 -----~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 149 (220)
T 2v9t_B 75 -----AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149 (220)
T ss_dssp -----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred -----HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh
Confidence 566667777777777776655555567788888888888888866 4567788888888888888877765 477
Q ss_pred cCCCCceeecccccccC
Q 044748 520 QLSSLEYLQLFENSLEG 536 (602)
Q Consensus 520 ~l~~L~~L~l~~N~l~~ 536 (602)
.+++|+.|++++|++.+
T Consensus 150 ~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 150 PLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TCTTCCEEECCSSCEEC
T ss_pred CCCCCCEEEeCCCCcCC
Confidence 78888888888888876
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=1.8e-16 Score=145.98 Aligned_cols=151 Identities=19% Similarity=0.205 Sum_probs=109.1
Q ss_pred cEEEecCcccccCCccccccccCcEEeccCCCCCCccC-ccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhh
Q 044748 362 KRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRIS-SSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLA 440 (602)
Q Consensus 362 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 440 (602)
+++++++|.++.+|..+ .+.++.|++++|.+.+..+ ..+..+++|++|++++|.+....+.
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~---------------- 75 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG---------------- 75 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT----------------
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH----------------
Confidence 35666666666666533 2345666666665554433 3356677777777777665554443
Q ss_pred hhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccC-cccccCCCCCcEEEccCCccccc-chhh
Q 044748 441 SFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREV-PESLGQLSSLESLVLSNNKLERL-PESF 518 (602)
Q Consensus 441 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~l-~~~l 518 (602)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.+ |..+..+++|+.|++++|+|+.+ |..|
T Consensus 76 ------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 76 ------AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp ------TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred ------HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence 556677777777777777776677788888899999999998877 56788888999999999998766 5678
Q ss_pred hcCCCCceeecccccccC
Q 044748 519 NQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 519 ~~l~~L~~L~l~~N~l~~ 536 (602)
..+++|++|++++|++++
T Consensus 150 ~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTCTTCCEEECCSCCEEC
T ss_pred cCCCCCCEEEecCcCCcC
Confidence 888899999999998887
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=4.9e-16 Score=154.23 Aligned_cols=231 Identities=18% Similarity=0.164 Sum_probs=141.8
Q ss_pred cccCCccccCcccCceEecccccccccccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecccCCCC
Q 044748 106 IKELPSSIECLSNLRELLIMDCSELESISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCS 185 (602)
Q Consensus 106 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 185 (602)
+..+|..+ .+++++|++++|.+...-+..|.++++|++|++++|++.+.++. ..|.+++++.++.... ++
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~------~~f~~L~~l~~~l~~~--~N 90 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA------DVFSNLPKLHEIRIEK--AN 90 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT------TSBCSCTTCCEEEEEE--ET
T ss_pred CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh------hHhhcchhhhhhhccc--CC
Confidence 45556544 35788888888865443334578888888888888887665552 4677777776544433 35
Q ss_pred CCcccc-ccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCc-cCCcccCCCC-CCcEEEcCcccccccc
Q 044748 186 SPQSLP-INMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFK-RLPDELGNLK-ALQRLTVDRTAIREVP 262 (602)
Q Consensus 186 ~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~l~-~L~~L~l~~n~l~~l~ 262 (602)
.+..++ ..+..+++|+.|++++|.+....+..+....++..+++.++.... ..+..|..+. .++.|++++|+++.++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 566554 445667788888888876655555455555667777776644333 3333455543 5777888888887777
Q ss_pred ccccccccccEEeecCCCCcccccc-ccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEE
Q 044748 263 ESLGQLAILRRLKLTNCSGLESISS-SIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLE 341 (602)
Q Consensus 263 ~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~ 341 (602)
......++++.+.+.++...+.++. .+..+++|++|++++| .++ .+|... +.+|+.|.
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~-----------------~lp~~~---~~~L~~L~ 229 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIH-----------------SLPSYG---LENLKKLR 229 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCC-----------------CCCSSS---CTTCCEEE
T ss_pred hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcC-----------------ccChhh---hccchHhh
Confidence 6655566777777766555555553 3566677777777664 222 333322 34555555
Q ss_pred EecCCCCccCCccccCCCCccEEEecC
Q 044748 342 IVDCQNFKRLPDELGNLKVLKRLTIDG 368 (602)
Q Consensus 342 l~~~~~~~~~~~~~~~~~~L~~L~l~~ 368 (602)
+.++...+.+|. +..+++|+.+++.+
T Consensus 230 ~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 230 ARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred hccCCCcCcCCC-chhCcChhhCcCCC
Confidence 555544555543 45555565555554
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.69 E-value=3.8e-16 Score=142.81 Aligned_cols=151 Identities=20% Similarity=0.245 Sum_probs=107.5
Q ss_pred cEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhh
Q 044748 362 KRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLAS 441 (602)
Q Consensus 362 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (602)
+.++.+++.++.+|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.+....+.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------- 70 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG----------------- 70 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT-----------------
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh-----------------
Confidence 56788888888887544 46889999999877655555677888888888888766543332
Q ss_pred hccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCccc-ccCCCCCcEEEccCCcccccchh-hh
Q 044748 442 FKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPES-LGQLSSLESLVLSNNKLERLPES-FN 519 (602)
Q Consensus 442 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~l~~l~~~-l~ 519 (602)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.++.. +..+++|+.|++++|+++.++.. +.
T Consensus 71 -----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 145 (208)
T 2o6s_A 71 -----VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145 (208)
T ss_dssp -----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred -----hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhc
Confidence 455667777777777776655555566777777777777777766543 56677777777777777666653 66
Q ss_pred cCCCCceeecccccccC
Q 044748 520 QLSSLEYLQLFENSLEG 536 (602)
Q Consensus 520 ~l~~L~~L~l~~N~l~~ 536 (602)
.+++|++|++++|++.+
T Consensus 146 ~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp TCTTCCEEECCSCCBCC
T ss_pred cCCCccEEEecCCCeec
Confidence 67777777777776665
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.5e-16 Score=143.89 Aligned_cols=153 Identities=15% Similarity=0.203 Sum_probs=132.7
Q ss_pred CCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEe
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEI 413 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 413 (602)
+++|++|++++|.+. .++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 788999999998865 555 6889999999999999887765 6888999999999999888777888999999999999
Q ss_pred ccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcc
Q 044748 414 SNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE 493 (602)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~ 493 (602)
++|.+....+. .+..+++|++|++++|...+.++ .+..+++|++|++++|.++.++
T Consensus 120 s~n~i~~~~~~----------------------~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~- 175 (197)
T 4ezg_A 120 SHSAHDDSILT----------------------KINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR- 175 (197)
T ss_dssp CSSBCBGGGHH----------------------HHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-
T ss_pred cCCccCcHhHH----------------------HHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-
Confidence 99988876665 67889999999999998566666 6899999999999999999987
Q ss_pred cccCCCCCcEEEccCCcccc
Q 044748 494 SLGQLSSLESLVLSNNKLER 513 (602)
Q Consensus 494 ~~~~l~~L~~L~L~~n~l~~ 513 (602)
.+..+++|+.|++++|+|+.
T Consensus 176 ~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TGGGCSSCCEEEECBC----
T ss_pred HhccCCCCCEEEeeCcccCC
Confidence 78999999999999999854
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=2.6e-16 Score=156.85 Aligned_cols=176 Identities=23% Similarity=0.254 Sum_probs=139.5
Q ss_pred cEEEecCcccccCCccccccccCcEEeccCCCCCCccCcccc-CCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhh
Q 044748 362 KRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIF-KLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLA 440 (602)
Q Consensus 362 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 440 (602)
+.++++++.++.+|..+. +.++.|++++|.+.+..+..+. .+++|++|++++|.+....+.
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~---------------- 82 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE---------------- 82 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTT----------------
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChh----------------
Confidence 578888888888886543 5688999999877666566666 889999999999887765554
Q ss_pred hhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccC-cccccCCCCCcEEEccCCcccccchh-h
Q 044748 441 SFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREV-PESLGQLSSLESLVLSNNKLERLPES-F 518 (602)
Q Consensus 441 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~l~~~-l 518 (602)
.+..+++|+.|++++|.+....+..+..+++|++|+|++|.++.+ +..|..+++|+.|+|++|+|+.+|.. |
T Consensus 83 ------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 156 (361)
T 2xot_A 83 ------AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156 (361)
T ss_dssp ------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred ------hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence 677888999999999888777777788889999999999999876 56788889999999999999888865 3
Q ss_pred ---hcCCCCceeecccccccCCch-hhhcccc-cccccccceeecccc
Q 044748 519 ---NQLSSLEYLQLFENSLEGIPE-YLRSLPS-KLTSLNLSIDLRYCL 561 (602)
Q Consensus 519 ---~~l~~L~~L~l~~N~l~~~~~-~l~~~~~-~L~~L~l~~~~~~~~ 561 (602)
..+++|+.|++++|+|+.+|. .+..++. .++.|+++.|++.|.
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp C----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred cCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 568899999999999988764 4555553 157888888888763
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=3.5e-16 Score=165.29 Aligned_cols=173 Identities=22% Similarity=0.300 Sum_probs=148.2
Q ss_pred CCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEe
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEI 413 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 413 (602)
+++|+.|++++|.+. .++ .+..+++|+.|+|++|.++.++. +..+++|+.|++++|.+.+ ++ .+..+++|++|++
T Consensus 42 L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence 678999999998754 344 48889999999999999998876 8899999999999997654 44 6888999999999
Q ss_pred ccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcc
Q 044748 414 SNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE 493 (602)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~ 493 (602)
++|.+... + .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.++.++.
T Consensus 117 s~N~l~~l-~-----------------------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 117 EHNGISDI-N-----------------------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp TTSCCCCC-G-----------------------GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred cCCCCCCC-c-----------------------cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 99876642 2 467889999999999987765 568899999999999999998876
Q ss_pred cccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCch
Q 044748 494 SLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPE 539 (602)
Q Consensus 494 ~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~ 539 (602)
+..+++|+.|+|++|+|+.+| .+..+++|+.|+|++|++...|.
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCCC
T ss_pred -hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCcc
Confidence 899999999999999998885 58899999999999999988554
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=1.1e-16 Score=151.73 Aligned_cols=173 Identities=16% Similarity=0.176 Sum_probs=141.9
Q ss_pred CCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEe
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEI 413 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 413 (602)
+.++..++++++.+.+ ++ .+..+++|++|++++|.++.++ .+..+++|+.|++++|.+.+. +. +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEEC
Confidence 5567777787776543 33 4678889999999999999887 688899999999999976654 43 889999999999
Q ss_pred ccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcc
Q 044748 414 SNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE 493 (602)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~ 493 (602)
++|.+.. ++. +.. ++|+.|++++|.+.+. + .+..+++|++|++++|+++.++
T Consensus 93 ~~N~l~~-l~~-----------------------~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~~- 144 (263)
T 1xeu_A 93 NRNRLKN-LNG-----------------------IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSIV- 144 (263)
T ss_dssp CSSCCSC-CTT-----------------------CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBCG-
T ss_pred CCCccCC-cCc-----------------------ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCCh-
Confidence 9987655 332 122 7899999999987663 3 5889999999999999999997
Q ss_pred cccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCchh
Q 044748 494 SLGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPEY 540 (602)
Q Consensus 494 ~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~ 540 (602)
.+..+++|+.|++++|+++.+ ..+..+++|+.|++++|++++.|..
T Consensus 145 ~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCccc
Confidence 688999999999999999887 6688999999999999999886543
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=6.4e-16 Score=143.29 Aligned_cols=153 Identities=21% Similarity=0.169 Sum_probs=130.6
Q ss_pred cCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeecc
Q 044748 383 ILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDC 462 (602)
Q Consensus 383 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 462 (602)
+-+.++.+++. .+.+|..+ .++|++|++++|.+.+..+. .+..+++|+.|++++|
T Consensus 20 s~~~v~c~~~~-l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~----------------------~~~~l~~L~~L~L~~N 74 (229)
T 3e6j_A 20 SGTTVDCRSKR-HASVPAGI--PTNAQILYLHDNQITKLEPG----------------------VFDSLINLKELYLGSN 74 (229)
T ss_dssp ETTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTT----------------------TTTTCTTCCEEECCSS
T ss_pred eCCEeEccCCC-cCccCCCC--CCCCCEEEcCCCccCccCHH----------------------HhhCccCCcEEECCCC
Confidence 35678888764 45677644 48999999999998877666 6788999999999999
Q ss_pred ccccCCChhhhCCcccceEeecCcccccCccc-ccCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCchh-
Q 044748 463 QKFKRLPNEIGNSKCLTVLIVKGTAIREVPES-LGQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPEY- 540 (602)
Q Consensus 463 ~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~- 540 (602)
.+....+..+..+++|++|++++|.++.++.. +..+++|+.|++++|+|+.+|..+..+++|+.|++++|+|+.+|..
T Consensus 75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 98766667788999999999999999988754 6889999999999999999999999999999999999999997765
Q ss_pred hhcccccccccccceeecccc
Q 044748 541 LRSLPSKLTSLNLSIDLRYCL 561 (602)
Q Consensus 541 l~~~~~~L~~L~l~~~~~~~~ 561 (602)
+..++ +|+.|+++.|.+.|.
T Consensus 155 ~~~l~-~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 155 FDRLS-SLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTCT-TCCEEECTTSCBCTT
T ss_pred HhCCC-CCCEEEeeCCCccCC
Confidence 45555 999999999998764
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=1e-15 Score=134.63 Aligned_cols=135 Identities=25% Similarity=0.366 Sum_probs=100.0
Q ss_pred ccCcEEeccCCCCC-CccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEee
Q 044748 382 AILRWLKLTNCSGL-GRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKII 460 (602)
Q Consensus 382 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 460 (602)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+... . .+..+++|++|+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~----------------------~~~~l~~L~~L~Ls 79 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S----------------------NLPKLPKLKKLELS 79 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S----------------------SCCCCSSCCEEEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h----------------------hhccCCCCCEEECc
Confidence 45556666655544 35555555566666666666554332 1 44566677777777
Q ss_pred ccccccCCChhhhCCcccceEeecCcccccCc--ccccCCCCCcEEEccCCcccccch----hhhcCCCCceeecccccc
Q 044748 461 DCQKFKRLPNEIGNSKCLTVLIVKGTAIREVP--ESLGQLSSLESLVLSNNKLERLPE----SFNQLSSLEYLQLFENSL 534 (602)
Q Consensus 461 ~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~L~~n~l~~l~~----~l~~l~~L~~L~l~~N~l 534 (602)
+|.+.+.+|..+..+++|++|++++|.++.+| ..+..+++|+.|++++|.++.+|. .+..+++|++|++++|.+
T Consensus 80 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp SCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 77776667777777899999999999999876 678899999999999999988876 688899999999999999
Q ss_pred cCCchh
Q 044748 535 EGIPEY 540 (602)
Q Consensus 535 ~~~~~~ 540 (602)
.++|++
T Consensus 160 ~~~~~~ 165 (168)
T 2ell_A 160 QEAPDS 165 (168)
T ss_dssp CBCCSS
T ss_pred hhcccc
Confidence 887754
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=3.1e-18 Score=179.87 Aligned_cols=202 Identities=20% Similarity=0.196 Sum_probs=117.4
Q ss_pred CCCCCCcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcc
Q 044748 243 GNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTR 322 (602)
Q Consensus 243 ~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 322 (602)
..+++|+.|++++|+++.+|..++.+++|+.|++++|......+.... .++..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~------~~~~~--------------------- 398 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR------ALDPL--------------------- 398 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------HHCTG---------------------
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHH------hcccc---------------------
Confidence 567899999999999999999999999999999866521111111000 00000
Q ss_pred hhccccccccCCCcccEEE-EecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCcc
Q 044748 323 IERLASSNLCMFKSLKYLE-IVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSS 401 (602)
Q Consensus 323 ~~~l~~~~~~~~~~L~~L~-l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 401 (602)
+..+.. ...+++|+.|+ ++.+. +..|..+.+.+|.++.++. ..|+.|++++|.+.+ +|.
T Consensus 399 -~~~~~~-l~~l~~L~~L~~l~~n~-----------~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~- 458 (567)
T 1dce_A 399 -LYEKET-LQYFSTLKAVDPMRAAY-----------LDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH- 458 (567)
T ss_dssp -GGHHHH-HHHHHHHHHHCGGGHHH-----------HHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-
T ss_pred -cCCHHH-HHHHHhcccCcchhhcc-----------cchhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-
Confidence 011111 11244454444 22221 1234445555555554432 247778888876554 554
Q ss_pred ccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceE
Q 044748 402 IFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVL 481 (602)
Q Consensus 402 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 481 (602)
+..+++|++|++++|.+. .+|..+..+++|+.|
T Consensus 459 ~~~l~~L~~L~Ls~N~l~-----------------------------------------------~lp~~~~~l~~L~~L 491 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR-----------------------------------------------ALPPALAALRCLEVL 491 (567)
T ss_dssp GGGGTTCCEEECCSSCCC-----------------------------------------------CCCGGGGGCTTCCEE
T ss_pred ccccccCcEeecCccccc-----------------------------------------------ccchhhhcCCCCCEE
Confidence 666666666666665433 233445556666666
Q ss_pred eecCcccccCcccccCCCCCcEEEccCCccccc--chhhhcCCCCceeecccccccCCch
Q 044748 482 IVKGTAIREVPESLGQLSSLESLVLSNNKLERL--PESFNQLSSLEYLQLFENSLEGIPE 539 (602)
Q Consensus 482 ~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l--~~~l~~l~~L~~L~l~~N~l~~~~~ 539 (602)
+|++|.++.+| .+..+++|+.|+|++|+|+.+ |..+..+++|+.|++++|+++++|+
T Consensus 492 ~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 492 QASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp ECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred ECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 66666666666 566666666666666666555 5566666666666666666666444
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.64 E-value=1.3e-15 Score=140.15 Aligned_cols=150 Identities=21% Similarity=0.337 Sum_probs=128.2
Q ss_pred cEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeecccc
Q 044748 385 RWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQK 464 (602)
Q Consensus 385 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 464 (602)
+.++.+++.+ ..+|..+ .+++++|++++|.+....+. .+..+++|+.|++++|.+
T Consensus 14 ~~v~c~~~~l-~~iP~~l--~~~l~~L~l~~n~i~~i~~~----------------------~~~~l~~L~~L~Ls~N~i 68 (220)
T 2v9t_B 14 NIVDCRGKGL-TEIPTNL--PETITEIRLEQNTIKVIPPG----------------------AFSPYKKLRRIDLSNNQI 68 (220)
T ss_dssp TEEECTTSCC-SSCCSSC--CTTCCEEECCSSCCCEECTT----------------------SSTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCc-CcCCCcc--CcCCCEEECCCCcCCCcCHh----------------------HhhCCCCCCEEECCCCcC
Confidence 5678887744 4566644 37899999999987765554 677889999999999999
Q ss_pred ccCCChhhhCCcccceEeecCcccccCccc-ccCCCCCcEEEccCCcccccc-hhhhcCCCCceeecccccccCCchh-h
Q 044748 465 FKRLPNEIGNSKCLTVLIVKGTAIREVPES-LGQLSSLESLVLSNNKLERLP-ESFNQLSSLEYLQLFENSLEGIPEY-L 541 (602)
Q Consensus 465 ~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~N~l~~~~~~-l 541 (602)
.+..|..+..+++|++|++++|.++.+|.. |..+++|+.|++++|+|+.++ ..|..+++|+.|++++|+|+.++.. +
T Consensus 69 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 69 SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp CEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence 888899999999999999999999999865 688999999999999997774 5699999999999999999997665 5
Q ss_pred hcccccccccccceeeccc
Q 044748 542 RSLPSKLTSLNLSIDLRYC 560 (602)
Q Consensus 542 ~~~~~~L~~L~l~~~~~~~ 560 (602)
..++ +|+.|+++.|.+.|
T Consensus 149 ~~l~-~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 149 SPLR-AIQTMHLAQNPFIC 166 (220)
T ss_dssp TTCT-TCCEEECCSSCEEC
T ss_pred hCCC-CCCEEEeCCCCcCC
Confidence 5555 99999999999887
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=1.5e-15 Score=160.48 Aligned_cols=188 Identities=18% Similarity=0.184 Sum_probs=154.0
Q ss_pred cccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEecc
Q 044748 336 SLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISN 415 (602)
Q Consensus 336 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (602)
++..+.+..+.+.+.. .+..+++|+.|++++|.+..++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3444444444433322 2457788999999999999887 58899999999999997765444 88999999999999
Q ss_pred CCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccc
Q 044748 416 CSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESL 495 (602)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~ 495 (602)
|.+.. ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.++.+ ..+
T Consensus 97 N~l~~-l~-----------------------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l 149 (605)
T 1m9s_A 97 NKIKD-LS-----------------------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVL 149 (605)
T ss_dssp SCCCC-CT-----------------------TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGG
T ss_pred CCCCC-Ch-----------------------hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhh
Confidence 97654 22 466789999999999987663 4588999999999999999998 578
Q ss_pred cCCCCCcEEEccCCcccccchhhhcCCCCceeecccccccCCchhhhcccccccccccceeec
Q 044748 496 GQLSSLESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLR 558 (602)
Q Consensus 496 ~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~~ 558 (602)
..+++|+.|+|++|+|+.++. +..+++|+.|+|++|+|+++| .+..++ +|+.|+++.|..
T Consensus 150 ~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~-~L~~L~L~~N~l 209 (605)
T 1m9s_A 150 SRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLK-NLDVLELFSQEC 209 (605)
T ss_dssp GSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCT-TCSEEECCSEEE
T ss_pred cccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HHccCC-CCCEEEccCCcC
Confidence 999999999999999987766 889999999999999999875 577776 999999887654
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=5.1e-16 Score=147.13 Aligned_cols=171 Identities=22% Similarity=0.242 Sum_probs=143.4
Q ss_pred CCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcch
Q 044748 357 NLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRI 436 (602)
Q Consensus 357 ~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 436 (602)
.+.++..++++++.+++++ .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+....
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~-------------- 79 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLS-------------- 79 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG--------------
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCCh--------------
Confidence 4556788899999999887 5788999999999999664 556 6889999999999998765432
Q ss_pred hhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccch
Q 044748 437 ERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPE 516 (602)
Q Consensus 437 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~ 516 (602)
.+..+++|+.|++++|.+.+ ++. +.. ++|++|++++|.++.++ .+..+++|+.|++++|+++.++
T Consensus 80 ----------~l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~- 144 (263)
T 1xeu_A 80 ----------PLKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV- 144 (263)
T ss_dssp ----------GGTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-
T ss_pred ----------hhccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-
Confidence 25678999999999998766 333 233 89999999999999986 5899999999999999999886
Q ss_pred hhhcCCCCceeecccccccCCchhhhcccccccccccceeecccc
Q 044748 517 SFNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLRYCL 561 (602)
Q Consensus 517 ~l~~l~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~~~~~ 561 (602)
.+..+++|++|++++|+++++ ..+..++ +|+.|+++.|...+.
T Consensus 145 ~l~~l~~L~~L~L~~N~i~~~-~~l~~l~-~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGNEITNT-GGLTRLK-KVNWIDLTGQKCVNE 187 (263)
T ss_dssp GGGGCTTCCEEECTTSCCCBC-TTSTTCC-CCCEEEEEEEEEECC
T ss_pred HHccCCCCCEEECCCCcCcch-HHhccCC-CCCEEeCCCCcccCC
Confidence 688999999999999999987 5666776 999999998776554
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=6.9e-15 Score=135.32 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=129.5
Q ss_pred cEEEEecCCCCccCCccccCCCCccEEEecCcccccCC--ccccccccCcEEeccCCCCCCccCccccCCCCCCeEEecc
Q 044748 338 KYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVP--KSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISN 415 (602)
Q Consensus 338 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (602)
+.++++++.+ +.+|..+. +.+++|++++|.++.++ ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l-~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKL-NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCc-ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 5789998775 45665443 46789999999999764 3478999999999999988776677899999999999999
Q ss_pred CCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccC-ccc
Q 044748 416 CSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREV-PES 494 (602)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l-~~~ 494 (602)
|.+....+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.++.+ |..
T Consensus 91 N~l~~~~~~----------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 91 NRLENVQHK----------------------MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp SCCCCCCGG----------------------GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred CccCccCHh----------------------HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence 988776655 678899999999999999988888999999999999999999988 678
Q ss_pred ccCCCCCcEEEccCCccc
Q 044748 495 LGQLSSLESLVLSNNKLE 512 (602)
Q Consensus 495 ~~~l~~L~~L~L~~n~l~ 512 (602)
+..+++|+.|++++|.+.
T Consensus 149 ~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTTCTTCCEEECCSCCEE
T ss_pred hcCCCCCCEEEecCcCCc
Confidence 999999999999999984
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=4.5e-17 Score=171.04 Aligned_cols=183 Identities=20% Similarity=0.151 Sum_probs=142.6
Q ss_pred cCCCCccEEEecCcccccCCccccccccCcEEeccCCC-------------CCCccCccccCCCCCCeEE-eccCCCccc
Q 044748 356 GNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCS-------------GLGRISSSIFKLKSLKSIE-ISNCSNFKR 421 (602)
Q Consensus 356 ~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~~ 421 (602)
...+.|+.|++++|.++.+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.+.+. .
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-D 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-H
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-h
Confidence 56788999999999999999999999999999987764 3455566777788888887 4543211 1
Q ss_pred cccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCC
Q 044748 422 FLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSL 501 (602)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L 501 (602)
++ .+........--....|+.|++++|.+.+ +|. +..+++|+.|++++|.++.+|..+..+++|
T Consensus 425 L~--------------~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 488 (567)
T 1dce_A 425 LR--------------SKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCL 488 (567)
T ss_dssp HH--------------HHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTC
T ss_pred hh--------------hhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCC
Confidence 11 00000000011112469999999998766 565 899999999999999999999999999999
Q ss_pred cEEEccCCcccccchhhhcCCCCceeecccccccCC--chhhhcccccccccccceee
Q 044748 502 ESLVLSNNKLERLPESFNQLSSLEYLQLFENSLEGI--PEYLRSLPSKLTSLNLSIDL 557 (602)
Q Consensus 502 ~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~--~~~l~~~~~~L~~L~l~~~~ 557 (602)
+.|+|++|+|+.+| .+..+++|+.|++++|+|+++ |..+..++ +|+.|+++.|.
T Consensus 489 ~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~-~L~~L~L~~N~ 544 (567)
T 1dce_A 489 EVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQGNS 544 (567)
T ss_dssp CEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT-TCCEEECTTSG
T ss_pred CEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC-CCCEEEecCCc
Confidence 99999999999898 899999999999999999996 88888877 78887766543
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=4e-15 Score=146.32 Aligned_cols=201 Identities=12% Similarity=0.110 Sum_probs=118.3
Q ss_pred ccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCccc----ccC-CccccccccCc-EEeccCCCCCCcc
Q 044748 325 RLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAI----REV-PKSLSQLAILR-WLKLTNCSGLGRI 398 (602)
Q Consensus 325 ~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i----~~l-~~~~~~l~~L~-~L~l~~~~~~~~~ 398 (602)
.++...+.++++|+++++.++.+....+..|.++.++..+....+.. ..+ ...+..+..|+ .+.+... +.+
T Consensus 114 ~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l 190 (329)
T 3sb4_A 114 NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKL 190 (329)
T ss_dssp EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCH
T ss_pred chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcH
Confidence 45555555566677777766665554455566655555555444221 111 12233444444 3333322 112
Q ss_pred Ccc----ccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhC
Q 044748 399 SSS----IFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGN 474 (602)
Q Consensus 399 ~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 474 (602)
+.. .....+++.+.+.+.-....+.. ....+++|+.+++++|.+....+..|.+
T Consensus 191 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~----------------------l~~~~~~L~~l~L~~n~i~~I~~~aF~~ 248 (329)
T 3sb4_A 191 EDEIMKAGLQPRDINFLTIEGKLDNADFKL----------------------IRDYMPNLVSLDISKTNATTIPDFTFAQ 248 (329)
T ss_dssp HHHHHHTTCCGGGCSEEEEEECCCHHHHHH----------------------HHHHCTTCCEEECTTBCCCEECTTTTTT
T ss_pred HHHHhhcccCccccceEEEeeeecHHHHHH----------------------HHHhcCCCeEEECCCCCcceecHhhhhC
Confidence 211 11344555555554311111000 1224678888888887777666677888
Q ss_pred CcccceEeecCcccccCc-ccccCCCCCc-EEEccCCcccccch-hhhcCCCCceeecccccccCCchhhhccccccccc
Q 044748 475 SKCLTVLIVKGTAIREVP-ESLGQLSSLE-SLVLSNNKLERLPE-SFNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSL 551 (602)
Q Consensus 475 ~~~L~~L~L~~n~l~~l~-~~~~~l~~L~-~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L 551 (602)
+.+|+.+++.+| ++.++ .+|.++++|+ .+++.+ .++.++. +|.++++|+.+++++|.++.+++..+.-.++|+.+
T Consensus 249 ~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 249 KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 888888888887 77665 5678888888 888887 7777764 58888888888888888887666544433356554
Q ss_pred c
Q 044748 552 N 552 (602)
Q Consensus 552 ~ 552 (602)
+
T Consensus 327 y 327 (329)
T 3sb4_A 327 Y 327 (329)
T ss_dssp E
T ss_pred c
Confidence 3
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.6e-14 Score=126.93 Aligned_cols=135 Identities=19% Similarity=0.219 Sum_probs=91.8
Q ss_pred CCccEEEecCcccc--cCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcch
Q 044748 359 KVLKRLTIDGTAIR--EVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRI 436 (602)
Q Consensus 359 ~~L~~L~l~~n~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 436 (602)
++|++|++++|.++ .+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+...+|.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~------------ 89 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM------------ 89 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH------------
Confidence 45666666666665 5555556666666666666654433 4555666666666666665554443
Q ss_pred hhhhhhccccchhccCCCCeEEeeccccccCC-ChhhhCCcccceEeecCcccccCcc----cccCCCCCcEEEccCCcc
Q 044748 437 ERLASFKLRLDLCMVKNLTSLKIIDCQKFKRL-PNEIGNSKCLTVLIVKGTAIREVPE----SLGQLSSLESLVLSNNKL 511 (602)
Q Consensus 437 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~L~~n~l~~l~~----~~~~l~~L~~L~L~~n~l 511 (602)
.+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.++.+|. .+..+++|+.|++++|.+
T Consensus 90 ----------~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 90 ----------LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ----------HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ----------HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 4445667777777777655432 2567788889999999999888876 678889999999999988
Q ss_pred cccchh
Q 044748 512 ERLPES 517 (602)
Q Consensus 512 ~~l~~~ 517 (602)
+.+|.+
T Consensus 160 ~~~~~~ 165 (168)
T 2ell_A 160 QEAPDS 165 (168)
T ss_dssp CBCCSS
T ss_pred hhcccc
Confidence 887754
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=1.1e-14 Score=125.20 Aligned_cols=126 Identities=24% Similarity=0.287 Sum_probs=67.7
Q ss_pred cccCcEEeccCCCCC-CccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEe
Q 044748 381 LAILRWLKLTNCSGL-GRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKI 459 (602)
Q Consensus 381 l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l 459 (602)
.++++.|++++|.+. +.+|..+..+++|++|++++|.+... . .+..+++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~----------------------~~~~l~~L~~L~L 71 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A----------------------NLPKLNKLKKLEL 71 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T----------------------TCCCCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h----------------------hhhcCCCCCEEEC
Confidence 355666666666554 45555556666666666666544332 1 3334445555555
Q ss_pred eccccccCCChhhhCCcccceEeecCcccccCc--ccccCCCCCcEEEccCCcccccch----hhhcCCCCceeecc
Q 044748 460 IDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVP--ESLGQLSSLESLVLSNNKLERLPE----SFNQLSSLEYLQLF 530 (602)
Q Consensus 460 ~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~L~~n~l~~l~~----~l~~l~~L~~L~l~ 530 (602)
++|.+.+.+|..+..+++|++|++++|.++.++ ..+..+++|+.|++++|+++.+|. .+..+++|++|+++
T Consensus 72 s~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555544444444444555555555555555443 445555555555555555544443 34555555555554
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1e-14 Score=125.43 Aligned_cols=126 Identities=20% Similarity=0.244 Sum_probs=107.1
Q ss_pred CCCCCCeEEeccCCCc-cccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEe
Q 044748 404 KLKSLKSIEISNCSNF-KRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLI 482 (602)
Q Consensus 404 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 482 (602)
..++|++|++++|.+. +.+|. .+..+++|+.|++++|.+.+. ..+..+++|++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~----------------------~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~ 70 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG----------------------LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLE 70 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS----------------------CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHH----------------------HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEE
Confidence 4588999999999877 56665 567889999999999987665 6688899999999
Q ss_pred ecCccccc-CcccccCCCCCcEEEccCCcccccc--hhhhcCCCCceeecccccccCCch----hhhcccccccccccc
Q 044748 483 VKGTAIRE-VPESLGQLSSLESLVLSNNKLERLP--ESFNQLSSLEYLQLFENSLEGIPE----YLRSLPSKLTSLNLS 554 (602)
Q Consensus 483 L~~n~l~~-l~~~~~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~l~~N~l~~~~~----~l~~~~~~L~~L~l~ 554 (602)
+++|.++. +|..+..+++|+.|++++|+++.++ ..+..+++|++|++++|+++++|. .+..++ +|+.||++
T Consensus 71 Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~ 148 (149)
T 2je0_A 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP-QLTYLDGY 148 (149)
T ss_dssp CCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT-TCCEETTB
T ss_pred CCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC-CcccccCC
Confidence 99999997 7877778999999999999998875 678999999999999999998765 455565 88887764
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.52 E-value=6.6e-15 Score=159.61 Aligned_cols=190 Identities=19% Similarity=0.178 Sum_probs=105.0
Q ss_pred CCcccEEEEecCCCCccCCccccCCCCc-----cEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCC
Q 044748 334 FKSLKYLEIVDCQNFKRLPDELGNLKVL-----KRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSL 408 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L-----~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 408 (602)
.+.++.|++.++.+.. .+..+.....| ..+++..|.+...+..+..++.|+.|++++|.+. .+|..+..+++|
T Consensus 172 ~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CCccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 4567788887766433 23222222222 2333333444445566778888889999888665 677777788888
Q ss_pred CeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCccc
Q 044748 409 KSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAI 488 (602)
Q Consensus 409 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l 488 (602)
++|++++|.+. .+|. .+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.|
T Consensus 250 ~~L~Ls~N~l~-~lp~----------------------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPA----------------------EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV 305 (727)
T ss_dssp SCCBCTTSCCS-CCCG----------------------GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC
T ss_pred CEEEeeCCcCc-ccCh----------------------hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC
Confidence 88888888776 5565 6778888888888888866 6677888888888888888888
Q ss_pred ccCcccccCCCCCcEEEccCCccc-ccchhhhcCC-CCceeecccccccC-Cchhhhccccccccccccee
Q 044748 489 REVPESLGQLSSLESLVLSNNKLE-RLPESFNQLS-SLEYLQLFENSLEG-IPEYLRSLPSKLTSLNLSID 556 (602)
Q Consensus 489 ~~l~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~-~L~~L~l~~N~l~~-~~~~l~~~~~~L~~L~l~~~ 556 (602)
+.+|..|..+++|+.|+|++|.|+ .+|..+..+. .+..+++++|.++. +| ..|+.|+++.|
T Consensus 306 ~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-------~~l~~l~l~~n 369 (727)
T 4b8c_D 306 TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-------HERRFIEINTD 369 (727)
T ss_dssp CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------CC---------
T ss_pred CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-------cccceeEeecc
Confidence 888888888888888888888884 4555554432 23347888888877 44 35555665544
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.50 E-value=5.3e-14 Score=126.39 Aligned_cols=83 Identities=27% Similarity=0.356 Sum_probs=43.7
Q ss_pred CCeEEeeccccccCCChhhhCCcccceEeecCcccccCcc-cccCCCCCcEEEccCCccccc-chhhhcCCCCceeeccc
Q 044748 454 LTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE-SLGQLSSLESLVLSNNKLERL-PESFNQLSSLEYLQLFE 531 (602)
Q Consensus 454 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~ 531 (602)
|++|++++|.+.+..|..+..+++|++|++++|+++.++. .+..+++|+.|++++|+|+.+ |..+..+++|++|++++
T Consensus 56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 3333333333333334445555555555555555554432 355556666666666666433 44455566666666666
Q ss_pred ccccC
Q 044748 532 NSLEG 536 (602)
Q Consensus 532 N~l~~ 536 (602)
|++++
T Consensus 136 N~l~c 140 (192)
T 1w8a_A 136 NPFNC 140 (192)
T ss_dssp CCBCC
T ss_pred CCccC
Confidence 66655
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=8.5e-15 Score=158.77 Aligned_cols=113 Identities=20% Similarity=0.224 Sum_probs=62.1
Q ss_pred CccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCC
Q 044748 352 PDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNID 431 (602)
Q Consensus 352 ~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 431 (602)
+..+..++.|+.|+|++|.+..+|..+..+++|++|+|++|.+. .+|..+..+++|++|++++|.+. .+|.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~------- 287 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPA------- 287 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCS-------
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccCh-------
Confidence 34455555666666666666655555555566666666666444 55555556666666666665544 3444
Q ss_pred CCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccc
Q 044748 432 GGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIR 489 (602)
Q Consensus 432 ~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~ 489 (602)
.+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.++
T Consensus 288 ---------------~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 288 ---------------ELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp ---------------SGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred ---------------hhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence 4555556666666665543 44555555666666666666665
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=6.3e-14 Score=124.07 Aligned_cols=134 Identities=17% Similarity=0.142 Sum_probs=78.3
Q ss_pred ccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeE
Q 044748 378 LSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSL 457 (602)
Q Consensus 378 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L 457 (602)
+..+++|+.|++++|.+. .++......++|++|++++|.+.+. . .+..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~----------------------~l~~l~~L~~L 69 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--D----------------------GFPLLRRLKTL 69 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--C----------------------CCCCCSSCCEE
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--c----------------------ccccCCCCCEE
Confidence 455677777777777554 3443323334777777777655442 1 34455666666
Q ss_pred EeeccccccCCChhhhCCcccceEeecCcccccCcc--cccCCCCCcEEEccCCcccccchh----hhcCCCCceeeccc
Q 044748 458 KIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE--SLGQLSSLESLVLSNNKLERLPES----FNQLSSLEYLQLFE 531 (602)
Q Consensus 458 ~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~--~~~~l~~L~~L~L~~n~l~~l~~~----l~~l~~L~~L~l~~ 531 (602)
++++|.+.+..+..+..+++|++|++++|.++.+|. .+..+++|+.|++++|.++.+|.. +..+++|+.||+++
T Consensus 70 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp ECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred ECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 666666554433334556666666666666665554 455566666666666666555543 55566666666666
Q ss_pred ccccC
Q 044748 532 NSLEG 536 (602)
Q Consensus 532 N~l~~ 536 (602)
|.+.+
T Consensus 150 n~~~~ 154 (176)
T 1a9n_A 150 VKLKE 154 (176)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 65544
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=9.4e-14 Score=122.97 Aligned_cols=129 Identities=19% Similarity=0.285 Sum_probs=87.5
Q ss_pred cccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccce
Q 044748 401 SIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTV 480 (602)
Q Consensus 401 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 480 (602)
.+..+++|++|++++|.+.. ++. .....++|+.|++++|.+.+. ..+..+++|++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~----------------------~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~ 68 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN----------------------LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKT 68 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC----------------------GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCE
T ss_pred hcCCcCCceEEEeeCCCCch-hHH----------------------hhhcCCCCCEEECCCCCCCcc--cccccCCCCCE
Confidence 34567777888888776553 232 122233778888888776554 45677777888
Q ss_pred EeecCcccccCcccc-cCCCCCcEEEccCCcccccch--hhhcCCCCceeecccccccCCchh----hhccccccccccc
Q 044748 481 LIVKGTAIREVPESL-GQLSSLESLVLSNNKLERLPE--SFNQLSSLEYLQLFENSLEGIPEY----LRSLPSKLTSLNL 553 (602)
Q Consensus 481 L~L~~n~l~~l~~~~-~~l~~L~~L~L~~n~l~~l~~--~l~~l~~L~~L~l~~N~l~~~~~~----l~~~~~~L~~L~l 553 (602)
|++++|.++.+|..+ ..+++|+.|++++|+|+.+|. .+..+++|+.|++++|+++.+|.. +..+| +|+.||+
T Consensus 69 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~-~L~~Ld~ 147 (176)
T 1a9n_A 69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP-QVRVLDF 147 (176)
T ss_dssp EECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCT-TCSEETT
T ss_pred EECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCC-ccceeCC
Confidence 888888887776443 677788888888888777776 577777888888888887776664 45554 6666665
Q ss_pred ce
Q 044748 554 SI 555 (602)
Q Consensus 554 ~~ 555 (602)
+.
T Consensus 148 ~~ 149 (176)
T 1a9n_A 148 QK 149 (176)
T ss_dssp EE
T ss_pred Cc
Confidence 54
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=2.4e-13 Score=122.05 Aligned_cols=127 Identities=18% Similarity=0.139 Sum_probs=110.0
Q ss_pred cEEEecCcccccCCccccccccCcEEeccCCCCCCccCc-cccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhh
Q 044748 362 KRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISS-SIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLA 440 (602)
Q Consensus 362 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 440 (602)
++++++++.++.+|..+. ++++.|++++|.+.+..+. .+..+++|++|++++|.+.+..|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------- 72 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN---------------- 72 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT----------------
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh----------------
Confidence 689999999999987554 4899999999977655543 478999999999999988877666
Q ss_pred hhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccC-cccccCCCCCcEEEccCCccc
Q 044748 441 SFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREV-PESLGQLSSLESLVLSNNKLE 512 (602)
Q Consensus 441 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~ 512 (602)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|+++.+ |..+..+++|+.|++++|.++
T Consensus 73 ------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 73 ------AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ------TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ------HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 778899999999999999888888889999999999999999865 677889999999999999984
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.46 E-value=1.5e-13 Score=134.98 Aligned_cols=258 Identities=14% Similarity=0.061 Sum_probs=136.2
Q ss_pred CCCCcEEecCCCCcCcCCcc-ccCCCCCcEEEcCCCcchhcchhhhcc--------CCCCcEEeccCCccccCCCCcc--
Q 044748 1 LVNLKEIDLSGSESLTKLPD-LSRAENLKILRLDDCLSLTETHSSIQY--------LNKLEFLTLEMCKSLTSLPTGI-- 69 (602)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~l~~~~-- 69 (602)
+++|++|||++|++. .+.. -..++.++.+.+..+.+ -...|.+ +++|+.|++.+ .+..++...
T Consensus 48 l~~L~~LdLs~n~i~-~~~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIK-MYSGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEEC-CEEESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTT
T ss_pred hccCeEEecCcceeE-EecCcccccccccccccccccc---CHHHhcccccccccccCCCcEEECCc--cccchhHHHhh
Confidence 468999999999854 1111 11122233344433321 1134445 66666666665 334444443
Q ss_pred CccccceecccCCCCCCCCcccccccccchhccccc------ccc-CCccccCcccCc-eEeccccccccc-cccccccc
Q 044748 70 HSKYLKILNLWGCSNLNNFPEITSCHICIFELAEVG------IKE-LPSSIECLSNLR-ELLIMDCSELES-ISSSIFKL 140 (602)
Q Consensus 70 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~-l~~~~~~l~~L~-~L~l~~~~~~~~-~~~~~~~l 140 (602)
.|++|+.+++.+|.+....+.+|..+.++..+.... ... -...|..+..|+ .+.+........ +...-...
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 666677777666655444455555555555554433 011 112344445554 333332211110 01111123
Q ss_pred CCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecccCCCCCCcccccc-ccCCCCCcccccccCCCCcccccchh
Q 044748 141 KSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLPIN-MFSFKSLPSIKIIHCPNIESLPSSLC 219 (602)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~ 219 (602)
.+++.+.+.+.-...... .....+++|+.+++.. +.+..++.. +.++.+|+.+++.++ +...-+.+|.
T Consensus 202 ~~~~~l~~~~~l~~~~~~-------~l~~~~~~L~~l~L~~---n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~ 270 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFK-------LIRDYMPNLVSLDISK---TNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS 270 (329)
T ss_dssp GGCSEEEEEECCCHHHHH-------HHHHHCTTCCEEECTT---BCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred cccceEEEeeeecHHHHH-------HHHHhcCCCeEEECCC---CCcceecHhhhhCCCCCCEEECCcc-cceehHHHhh
Confidence 445555555431111111 1111245666666665 334444443 444666777766665 4344445677
Q ss_pred cccccc-EEeeeccCCCccCCcccCCCCCCcEEEcCccccccccc-cccccccccEEee
Q 044748 220 MFKSLT-SLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPE-SLGQLAILRRLKL 276 (602)
Q Consensus 220 ~~~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l 276 (602)
.+.+|+ .+++.+ .+....+..|.+|++|+.+++++|+++.++. .|.++++|+.|..
T Consensus 271 ~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 271 NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 788888 888876 5555556778888888888888888887765 4777888887753
No 131
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.45 E-value=4e-12 Score=128.23 Aligned_cols=322 Identities=10% Similarity=0.014 Sum_probs=183.6
Q ss_pred hhccCCCCcEEeccCCccccCCCCcc--CccccceecccCCCCCCCCcccccccccchhccccc-cccCC-ccccCcccC
Q 044748 44 SIQYLNKLEFLTLEMCKSLTSLPTGI--HSKYLKILNLWGCSNLNNFPEITSCHICIFELAEVG-IKELP-SSIECLSNL 119 (602)
Q Consensus 44 ~~~~~~~L~~L~l~~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~l~-~~~~~l~~L 119 (602)
+|.+|.+|+.+.+..+ +..++... .|++|+.+++..+ +...-..+|.++.+|+.+.+.. +..+. .+|..+..+
T Consensus 66 AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence 4445555555555422 23333332 4555555555432 1212223344455555554443 22221 233333332
Q ss_pred ceEecccccccccccccccccCCccEEEeeCCCCccccccCCCCCCCCCcCcccceeeecccCCCCCCcccc-ccccCCC
Q 044748 120 RELLIMDCSELESISSSIFKLKSLKSIVISHCSNFKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQSLP-INMFSFK 198 (602)
Q Consensus 120 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~~~ 198 (602)
+....... ...-...|..+++|+.+.+.++ ....-. .+|.++.+|+.+.+.. + +..+. ..+..+.
T Consensus 143 ~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~-~~~I~~-------~~F~~c~~L~~i~l~~---~-~~~I~~~~F~~~~ 208 (394)
T 4fs7_A 143 EITIPEGV--TVIGDEAFATCESLEYVSLPDS-METLHN-------GLFSGCGKLKSIKLPR---N-LKIIRDYCFAECI 208 (394)
T ss_dssp EEECCTTC--CEECTTTTTTCTTCCEEECCTT-CCEECT-------TTTTTCTTCCBCCCCT---T-CCEECTTTTTTCT
T ss_pred ccccCccc--cccchhhhcccCCCcEEecCCc-cceecc-------ccccCCCCceEEEcCC---C-ceEeCchhhcccc
Confidence 22222221 1122334667777887777654 222112 6677777787777764 2 33332 3344567
Q ss_pred CCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccccccccccccEEeecC
Q 044748 199 SLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQLAILRRLKLTN 278 (602)
Q Consensus 199 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~ 278 (602)
.|+.+.+..+. ..+.+.......|+.+.+.. .........+..+..++.+.+..+...--...+..+..++.+....
T Consensus 209 ~L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 209 LLENMEFPNSL--YYLGDFALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp TCCBCCCCTTC--CEECTTTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECS
T ss_pred ccceeecCCCc--eEeehhhcccCCCceEEECC-CceecccccccccccceeEEcCCCcceeeccccccccccceeccCc
Confidence 77777665542 22333344556788887764 3333444567788888888887764432233466777888777755
Q ss_pred CCCccccccccccCCCCcEEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCC
Q 044748 279 CSGLESISSSIFKLKSLKSIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNL 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 358 (602)
.. .....+..+.+|+++.+.. .++ .+....+.++.+|+.+++..+ +...-...|.++
T Consensus 286 ~~---i~~~~F~~~~~L~~i~l~~--~i~-----------------~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c 342 (394)
T 4fs7_A 286 VI---VPEKTFYGCSSLTEVKLLD--SVK-----------------FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGC 342 (394)
T ss_dssp SE---ECTTTTTTCTTCCEEEECT--TCC-----------------EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC
T ss_pred ee---ecccccccccccccccccc--ccc-----------------eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCC
Confidence 32 1224466788888888865 233 566666777888999888653 333344678889
Q ss_pred CCccEEEecCcccccCC-ccccccccCcEEeccCCCCCCccCccccCCCCCCeE
Q 044748 359 KVLKRLTIDGTAIREVP-KSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSI 411 (602)
Q Consensus 359 ~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 411 (602)
.+|+++++..+ ++.+. .+|.++++|+.+++..+ ...+...|.++++|+++
T Consensus 343 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 343 TSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred CCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 99999998766 65544 46888899999998765 23344567788887765
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.44 E-value=1.1e-11 Score=124.98 Aligned_cols=144 Identities=11% Similarity=0.122 Sum_probs=79.4
Q ss_pred ccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCc
Q 044748 355 LGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGT 434 (602)
Q Consensus 355 ~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 434 (602)
+..+..++.+.+..+...--...+..+..++.+...... .....+..+.+|+.+.+.++ ...+...
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~--i~~I~~~--------- 314 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS--VKFIGEE--------- 314 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT--CCEECTT---------
T ss_pred ccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc--cceechh---------
Confidence 444555555555444332222334445555555444321 11123445566666665442 1222210
Q ss_pred chhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCc-ccccCCCCCcEEEccCCcccc
Q 044748 435 RIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVP-ESLGQLSSLESLVLSNNKLER 513 (602)
Q Consensus 435 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~ 513 (602)
++..|.+|+.+++.+ ........+|.++.+|+.+++..+ ++.+. .+|.+|.+|+.+++..+ ++.
T Consensus 315 ------------aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~ 379 (394)
T 4fs7_A 315 ------------AFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQ 379 (394)
T ss_dssp ------------TTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGG
T ss_pred ------------hhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEE
Confidence 455666666666654 233344456777778888888766 66664 57788888888888643 555
Q ss_pred cchhhhcCCCCcee
Q 044748 514 LPESFNQLSSLEYL 527 (602)
Q Consensus 514 l~~~l~~l~~L~~L 527 (602)
+..+|.++++|+.+
T Consensus 380 ~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 380 YRYDFEDTTKFKWI 393 (394)
T ss_dssp GGGGBCTTCEEEEE
T ss_pred hhheecCCCCCcEE
Confidence 55567777777764
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.43 E-value=9e-13 Score=118.24 Aligned_cols=126 Identities=25% Similarity=0.293 Sum_probs=83.0
Q ss_pred cEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhh
Q 044748 362 KRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLAS 441 (602)
Q Consensus 362 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (602)
+.++++++.++.+|..+ .++++.|++++|.+. .+|..+..+++|++|++++
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~-------------------------- 63 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSN-------------------------- 63 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCS--------------------------
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCC--------------------------
Confidence 45677777777666543 246666666666443 4444444555555555554
Q ss_pred hccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcc-cccCCCCCcEEEccCCcccccch-hhh
Q 044748 442 FKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE-SLGQLSSLESLVLSNNKLERLPE-SFN 519 (602)
Q Consensus 442 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~l~~l~~-~l~ 519 (602)
|.+.+..+..+..+++|++|++++|.++.++. .|..+++|+.|+|++|+|+.+|. .|.
T Consensus 64 --------------------N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~ 123 (193)
T 2wfh_A 64 --------------------NRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN 123 (193)
T ss_dssp --------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred --------------------CcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhh
Confidence 44444444556677777777888887776653 57777888888888888877765 377
Q ss_pred cCCCCceeecccccccC
Q 044748 520 QLSSLEYLQLFENSLEG 536 (602)
Q Consensus 520 ~l~~L~~L~l~~N~l~~ 536 (602)
.+++|+.|++++|++.+
T Consensus 124 ~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 124 DLSALSHLAIGANPLYC 140 (193)
T ss_dssp TCTTCCEEECCSSCEEC
T ss_pred cCccccEEEeCCCCeec
Confidence 77888888888888776
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=1.1e-11 Score=124.38 Aligned_cols=105 Identities=13% Similarity=0.183 Sum_probs=61.0
Q ss_pred chhccCCCCeEEeeccccc-----cCCChhhhCCcccceEeecCcccccCc-ccccCCCCCcEEEccCCcccccch-hhh
Q 044748 447 DLCMVKNLTSLKIIDCQKF-----KRLPNEIGNSKCLTVLIVKGTAIREVP-ESLGQLSSLESLVLSNNKLERLPE-SFN 519 (602)
Q Consensus 447 ~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~l~~-~l~ 519 (602)
+|..|++|+.+.+.++... ...+.+|.++++|+.+++.+ .++.++ .+|.+|++|+.+++.++ ++.++. +|.
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~ 343 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN 343 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC
Confidence 3444555555555443322 23344566677777777773 466554 46677777777777544 655554 477
Q ss_pred cCCCCceeecccccccCCch-hhhcccccccccccc
Q 044748 520 QLSSLEYLQLFENSLEGIPE-YLRSLPSKLTSLNLS 554 (602)
Q Consensus 520 ~l~~L~~L~l~~N~l~~~~~-~l~~~~~~L~~L~l~ 554 (602)
++ +|+.+++.+|.+..+++ .+..++..++.++++
T Consensus 344 ~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 344 NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence 77 77777777777666333 344455455554443
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.41 E-value=1.3e-12 Score=117.19 Aligned_cols=126 Identities=25% Similarity=0.300 Sum_probs=99.7
Q ss_pred cEEEEecCCCCccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCC
Q 044748 338 KYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCS 417 (602)
Q Consensus 338 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 417 (602)
+.++++++.+ +.+|..+ .+++++|++++|.++.+|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l-~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGL-KVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCC-SSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCC-CcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 6788888774 5566544 368999999999999999999999999999999998876666667777777777777764
Q ss_pred CccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcc-ccc
Q 044748 418 NFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE-SLG 496 (602)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~-~~~ 496 (602)
+ ....+..+..+++|++|++++|.++.+|. .|.
T Consensus 90 l----------------------------------------------~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~ 123 (193)
T 2wfh_A 90 L----------------------------------------------RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN 123 (193)
T ss_dssp C----------------------------------------------CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred c----------------------------------------------CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhh
Confidence 3 33334456777888888888888888875 477
Q ss_pred CCCCCcEEEccCCccc
Q 044748 497 QLSSLESLVLSNNKLE 512 (602)
Q Consensus 497 ~l~~L~~L~L~~n~l~ 512 (602)
.+++|+.|++++|.+.
T Consensus 124 ~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 124 DLSALSHLAIGANPLY 139 (193)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred cCccccEEEeCCCCee
Confidence 8889999999999874
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=1e-11 Score=124.61 Aligned_cols=264 Identities=9% Similarity=0.131 Sum_probs=181.2
Q ss_pred cccccEEeeeccCCCccCCcccCCCCCCcEEEcCcccccccccc-ccccccccEEeecCCCCccccccccccCCCCcEEE
Q 044748 221 FKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPES-LGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIV 299 (602)
Q Consensus 221 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 299 (602)
+..++.+.+-+ .+.......|.++ +|+.+.+..+ ++.++.. |.+ .+|+.+.+.. .....-...+..+++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 46677777755 4455555667775 7888888765 7666554 444 4788888876 34444446677888899998
Q ss_pred eecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccccCCc-cc
Q 044748 300 ISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIREVPK-SL 378 (602)
Q Consensus 300 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~-~~ 378 (602)
+..+ .++ .++...+. ..+|+.+.+..+ +...-...|.++++|+++++..+ ++.++. +|
T Consensus 187 l~~n-~l~-----------------~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF 245 (401)
T 4fdw_A 187 LSKT-KIT-----------------KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAF 245 (401)
T ss_dssp CTTS-CCS-----------------EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTT
T ss_pred cCCC-cce-----------------EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccc
Confidence 8763 233 56666666 578888888753 44444566888888999988764 554443 34
Q ss_pred cccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCcc----ccccCCCCCCCCCcchhhhhhhccccchhccCCC
Q 044748 379 SQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFK----RFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNL 454 (602)
Q Consensus 379 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 454 (602)
.. .+|+.+.+.++ +...-...|.++++|+.+.+.++.... .++. ..|..|++|
T Consensus 246 ~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~---------------------~aF~~c~~L 302 (401)
T 4fdw_A 246 RE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP---------------------YCLEGCPKL 302 (401)
T ss_dssp TT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT---------------------TTTTTCTTC
T ss_pred cc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECH---------------------HHhhCCccC
Confidence 44 78888888653 433335677888899999888765431 1211 167788889
Q ss_pred CeEEeeccccccCCChhhhCCcccceEeecCcccccCc-ccccCCCCCcEEEccCCcccccch-hhhcCC-CCceeeccc
Q 044748 455 TSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVP-ESLGQLSSLESLVLSNNKLERLPE-SFNQLS-SLEYLQLFE 531 (602)
Q Consensus 455 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~-~L~~L~l~~ 531 (602)
+.+.+.+ .+.......|.++.+|+.+++..+ ++.++ .+|.++ +|+.+++++|.+..++. .|.+++ .++.|++..
T Consensus 303 ~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 303 ARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred CeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 9888885 455555667888888999998655 66664 577888 89999999988866654 466664 678888888
Q ss_pred ccccC
Q 044748 532 NSLEG 536 (602)
Q Consensus 532 N~l~~ 536 (602)
+.+..
T Consensus 380 ~~~~~ 384 (401)
T 4fdw_A 380 ESVEK 384 (401)
T ss_dssp GGHHH
T ss_pred HHHHH
Confidence 76543
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.40 E-value=1.8e-12 Score=114.87 Aligned_cols=90 Identities=23% Similarity=0.378 Sum_probs=64.9
Q ss_pred ccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCccc-ccCCCCCcEEEccCCcccccchh-hhcCCCCcee
Q 044748 450 MVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPES-LGQLSSLESLVLSNNKLERLPES-FNQLSSLEYL 527 (602)
Q Consensus 450 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L 527 (602)
.+++|++|++++|.+.+..+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|+++.+|.. +..+++|++|
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEE
Confidence 334444444444444444444567788888888888888877653 57888999999999998888765 5778899999
Q ss_pred ecccccccCCch
Q 044748 528 QLFENSLEGIPE 539 (602)
Q Consensus 528 ~l~~N~l~~~~~ 539 (602)
++++|++++.++
T Consensus 130 ~l~~N~~~~~~~ 141 (177)
T 2o6r_A 130 WLHTNPWDCSCP 141 (177)
T ss_dssp ECCSSCBCCCHH
T ss_pred EecCCCeeccCc
Confidence 999999887433
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=7e-15 Score=133.05 Aligned_cols=86 Identities=26% Similarity=0.250 Sum_probs=47.1
Q ss_pred hccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCcccccch--hhhcCCCCce
Q 044748 449 CMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLERLPE--SFNQLSSLEY 526 (602)
Q Consensus 449 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~--~l~~l~~L~~ 526 (602)
..+++|+.|++++|.+. .+|..+..+++|++|++++|+++.+| .+..+++|+.|++++|+++.++. .+..+++|++
T Consensus 67 ~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~ 144 (198)
T 1ds9_A 67 SGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144 (198)
T ss_dssp HHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred ccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCE
Confidence 34445555555554433 34444444555666666666665554 35555566666666666655443 3555666666
Q ss_pred eecccccccC
Q 044748 527 LQLFENSLEG 536 (602)
Q Consensus 527 L~l~~N~l~~ 536 (602)
|++++|++++
T Consensus 145 L~l~~N~l~~ 154 (198)
T 1ds9_A 145 LLLAGNPLYN 154 (198)
T ss_dssp EEECSCHHHH
T ss_pred EEecCCcccc
Confidence 6666666654
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=3.1e-12 Score=113.30 Aligned_cols=130 Identities=15% Similarity=0.130 Sum_probs=95.3
Q ss_pred ccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhh
Q 044748 361 LKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLA 440 (602)
Q Consensus 361 L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 440 (602)
.+.++++++.++.+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+....+.
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------- 70 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG---------------- 70 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT----------------
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh----------------
Confidence 356667777776666433 35777777777766544444566777777777777766543333
Q ss_pred hhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCccc-ccCCCCCcEEEccCCccccc
Q 044748 441 SFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPES-LGQLSSLESLVLSNNKLERL 514 (602)
Q Consensus 441 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~l~~l 514 (602)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.+...
T Consensus 71 ------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 71 ------VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp ------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ------HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 456777888888888887776666778899999999999999988865 57799999999999998543
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=4.1e-14 Score=127.99 Aligned_cols=135 Identities=24% Similarity=0.220 Sum_probs=92.2
Q ss_pred cCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccC
Q 044748 373 EVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVK 452 (602)
Q Consensus 373 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 452 (602)
.+|..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|. .+..++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~----------------------~~~~~~ 93 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN----------------------LDAVAD 93 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS----------------------HHHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc----------------------hhhcCC
Confidence 333355555666666666654433 44 5555666666666665443 2333 444556
Q ss_pred CCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcc--cccCCCCCcEEEccCCccccc-ch----------hhh
Q 044748 453 NLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE--SLGQLSSLESLVLSNNKLERL-PE----------SFN 519 (602)
Q Consensus 453 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~--~~~~l~~L~~L~L~~n~l~~l-~~----------~l~ 519 (602)
+|++|++++|.+.+ +| .+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.. |. .+.
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 77777777776654 34 57788899999999999998764 688999999999999998443 32 277
Q ss_pred cCCCCceeecccccccC
Q 044748 520 QLSSLEYLQLFENSLEG 536 (602)
Q Consensus 520 ~l~~L~~L~l~~N~l~~ 536 (602)
.+++|+.|| +|.++.
T Consensus 172 ~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HCSSCSEEC--CGGGTT
T ss_pred hCCCcEEEC--CcccCH
Confidence 899999987 777765
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=2.1e-11 Score=107.20 Aligned_cols=92 Identities=22% Similarity=0.318 Sum_probs=77.9
Q ss_pred CCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCccc-ccCCCCCcEEEccCCcccccchh-hhcCCCCceeec
Q 044748 452 KNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPES-LGQLSSLESLVLSNNKLERLPES-FNQLSSLEYLQL 529 (602)
Q Consensus 452 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l 529 (602)
++|+.|++++|.+.+..|..+..+++|++|+|++|+|+.+|.. |..+++|+.|+|++|+|+.+|.. |..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 6889999999988888788888999999999999999988764 57889999999999999888865 888999999999
Q ss_pred ccccccCCchhhhc
Q 044748 530 FENSLEGIPEYLRS 543 (602)
Q Consensus 530 ~~N~l~~~~~~l~~ 543 (602)
++|++.+.+..+..
T Consensus 113 ~~N~~~c~~~~~~~ 126 (174)
T 2r9u_A 113 YNNPWDCECRDIMY 126 (174)
T ss_dssp CSSCBCTTBGGGHH
T ss_pred CCCCcccccccHHH
Confidence 99999886654433
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.25 E-value=1.9e-09 Score=108.50 Aligned_cols=132 Identities=11% Similarity=0.069 Sum_probs=59.0
Q ss_pred CCCcCcccceeeecccCCCCCCccccc-cccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCC
Q 044748 166 DGCTGIERLASFKLKLEGCSSPQSLPI-NMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGN 244 (602)
Q Consensus 166 ~~~~~l~~L~~L~l~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 244 (602)
.+|.++.+|+.+.+..+.-..++.+.. .+..+.+|+.+.+-.+ ....-...+..+.+|+.+.+.. .........|..
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~ 158 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPE-GVTSVADGMFSY 158 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCT-TCCEECTTTTTT
T ss_pred HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccc-eeeeecccceec
Confidence 444555555555444311112222221 2233445554444332 2222223455566666666643 223333345666
Q ss_pred CCCCcEEEcCccccccccccccccccccEEeecCCCCccccccccccCCCCcEEEee
Q 044748 245 LKALQRLTVDRTAIREVPESLGQLAILRRLKLTNCSGLESISSSIFKLKSLKSIVIS 301 (602)
Q Consensus 245 l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 301 (602)
+..|+.+.+..+ ++.+.........|+.+.+... ........+..+..++.....
T Consensus 159 c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~ 213 (394)
T 4gt6_A 159 CYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTITSD 213 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred ccccccccccce-eeEeccccccccceeEEEECCc-ccccccchhhhccccceeccc
Confidence 666776666543 4444333223345666666443 222223344445555555443
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.23 E-value=3.5e-11 Score=105.43 Aligned_cols=90 Identities=24% Similarity=0.350 Sum_probs=74.1
Q ss_pred CCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCccc-ccCCCCCcEEEccCCcccccch-hhhcCCCCceeec
Q 044748 452 KNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPES-LGQLSSLESLVLSNNKLERLPE-SFNQLSSLEYLQL 529 (602)
Q Consensus 452 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l 529 (602)
++++.|++++|.+.+..+..+..+++|++|++++|+++.+|.. |..+++|+.|+|++|+|+.+|. .|..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 6788899999888887788888888999999999998888754 5788889999999999887776 4788889999999
Q ss_pred ccccccCCchhh
Q 044748 530 FENSLEGIPEYL 541 (602)
Q Consensus 530 ~~N~l~~~~~~l 541 (602)
++|++++.+..+
T Consensus 110 ~~N~~~c~c~~l 121 (170)
T 3g39_A 110 LNNPWDCACSDI 121 (170)
T ss_dssp CSSCBCTTBGGG
T ss_pred CCCCCCCCchhH
Confidence 999888754433
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.17 E-value=9.5e-09 Score=103.39 Aligned_cols=154 Identities=14% Similarity=0.083 Sum_probs=91.2
Q ss_pred cccCcc-cCceEecccccccccccccccccCCccEEEeeCCCC--ccccccCCCCCCCCCcCcccceeeecccCCCCCCc
Q 044748 112 SIECLS-NLRELLIMDCSELESISSSIFKLKSLKSIVISHCSN--FKRFLEIPSCNTDGCTGIERLASFKLKLEGCSSPQ 188 (602)
Q Consensus 112 ~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 188 (602)
+|.++. .|+.+.+... +...-..+|..|++|+.+.+..+.- ...+. ..+|.++..|+.+.+.. .+.
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig------~~aF~~c~~L~~i~~~~----~~~ 126 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIG------RQAFMFCSELTDIPILD----SVT 126 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEEC------TTTTTTCTTCCBCGGGT----TCS
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEec------hhhchhcccceeeccCC----ccc
Confidence 355553 4777777654 3333345577788888888766421 12222 16777788888777654 233
Q ss_pred ccc-ccccCCCCCcccccccCCCCcccccchhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCccccccccccccc
Q 044748 189 SLP-INMFSFKSLPSIKIIHCPNIESLPSSLCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPESLGQ 267 (602)
Q Consensus 189 ~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~ 267 (602)
.+. ..+..+.+|+.+.+... ........+..+..|+.+.+.++ ........|. ...|+.+.+..+-..--...+..
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~ 203 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSE 203 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTT
T ss_pred eehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhh
Confidence 333 33455778888877653 33333445677888888888653 3333334454 35788888876533322334667
Q ss_pred cccccEEeecCC
Q 044748 268 LAILRRLKLTNC 279 (602)
Q Consensus 268 l~~L~~L~l~~~ 279 (602)
+..++.+.....
T Consensus 204 c~~l~~~~~~~~ 215 (394)
T 4gt6_A 204 CFALSTITSDSE 215 (394)
T ss_dssp CTTCCEEEECCS
T ss_pred ccccceeccccc
Confidence 777777776553
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.12 E-value=4.9e-12 Score=125.62 Aligned_cols=161 Identities=17% Similarity=0.125 Sum_probs=87.6
Q ss_pred CCcccEEEEecCCCCccCCccc----c-CCCCccEEEecCccccc--CCccccccccCcEEeccCCCCCCccCccc----
Q 044748 334 FKSLKYLEIVDCQNFKRLPDEL----G-NLKVLKRLTIDGTAIRE--VPKSLSQLAILRWLKLTNCSGLGRISSSI---- 402 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~~~~~----~-~~~~L~~L~l~~n~i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~---- 402 (602)
.+.|++|++++|.+.......+ . ..++|++|++++|.++. +......+++|+.|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4578888888887654322222 2 23678888888887762 22233445677888888876643322222
Q ss_pred -cCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccC----CChhhhCCcc
Q 044748 403 -FKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKR----LPNEIGNSKC 477 (602)
Q Consensus 403 -~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~ 477 (602)
...+.|++|++++|.+...... .+...+...++|++|++++|.+.+. ++..+...++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~------------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~ 212 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVA------------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ 212 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHH------------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC
T ss_pred HhcCCccceeeCCCCCCChHHHH------------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC
Confidence 2356677777777654331111 0111334455666666666654432 1333444555
Q ss_pred cceEeecCccccc-----CcccccCCCCCcEEEccCCccc
Q 044748 478 LTVLIVKGTAIRE-----VPESLGQLSSLESLVLSNNKLE 512 (602)
Q Consensus 478 L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~L~~n~l~ 512 (602)
|++|+|++|.|+. +...+...++|++|+|++|.|+
T Consensus 213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 6666666666652 2233344456666666666653
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.10 E-value=4.3e-10 Score=98.42 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=71.1
Q ss_pred ccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhh
Q 044748 361 LKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLA 440 (602)
Q Consensus 361 L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 440 (602)
.+.+++++|.++.+|..+ .+++++|++++|.+.+..+..+..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N------------------------ 64 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN------------------------ 64 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS------------------------
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC------------------------
Confidence 456677777776666544 256666666666555544555555555555555554
Q ss_pred hhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcc-cccCCCCCcEEEccCCccccc
Q 044748 441 SFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPE-SLGQLSSLESLVLSNNKLERL 514 (602)
Q Consensus 441 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~l~~l 514 (602)
.+.+..+..+..+++|++|++++|+++.+|. .+..+++|+.|++++|.++..
T Consensus 65 ----------------------~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 65 ----------------------QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp ----------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ----------------------CcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 4444444456778888899999999888875 478889999999999987544
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=4.6e-10 Score=98.54 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=72.3
Q ss_pred cEEEecCcccccCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhh
Q 044748 362 KRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLAS 441 (602)
Q Consensus 362 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (602)
+.++++++.++.+|..+. ++|+.|++++|.+.+..|..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N------------------------- 67 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN------------------------- 67 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-------------------------
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-------------------------
Confidence 466777777776665443 66666777666655554555555555555555554
Q ss_pred hccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCccc-ccCCCCCcEEEccCCcccccch
Q 044748 442 FKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPES-LGQLSSLESLVLSNNKLERLPE 516 (602)
Q Consensus 442 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~l~~l~~ 516 (602)
.+.+..+..+..+++|++|++++|.|+.+|.. +..+++|+.|++++|.+...+.
T Consensus 68 ---------------------~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 68 ---------------------KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp ---------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ---------------------CCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 43333334456778888888888888888764 7888899999999998865554
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.00 E-value=2.8e-11 Score=120.19 Aligned_cols=161 Identities=20% Similarity=0.188 Sum_probs=116.7
Q ss_pred CCCccEEEecCcccccCC-----cccc-ccccCcEEeccCCCCCCccC-ccccCCCCCCeEEeccCCCccccccCCCCCC
Q 044748 358 LKVLKRLTIDGTAIREVP-----KSLS-QLAILRWLKLTNCSGLGRIS-SSIFKLKSLKSIEISNCSNFKRFLKIPSCNI 430 (602)
Q Consensus 358 ~~~L~~L~l~~n~i~~l~-----~~~~-~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 430 (602)
.+.|++|++++|.++... ..+. ..++|+.|++++|.+..... .....+++|++|++++|.+......
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~------ 144 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK------ 144 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH------
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH------
Confidence 457999999999987322 2222 23689999999997754322 2233467899999999976543222
Q ss_pred CCCcchhhhhhhccccch-hccCCCCeEEeecccccc----CCChhhhCCcccceEeecCccccc-----CcccccCCCC
Q 044748 431 DGGTRIERLASFKLRLDL-CMVKNLTSLKIIDCQKFK----RLPNEIGNSKCLTVLIVKGTAIRE-----VPESLGQLSS 500 (602)
Q Consensus 431 ~~~~~~~~l~~~~~~~~~-~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~L~~n~l~~-----l~~~~~~l~~ 500 (602)
.+...+ ...++|++|++++|.+.. .++..+...++|++|+|++|.++. ++..+...++
T Consensus 145 ------------~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~ 212 (372)
T 3un9_A 145 ------------DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ 212 (372)
T ss_dssp ------------HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC
T ss_pred ------------HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC
Confidence 000012 246789999999998765 344455778999999999999973 3566777889
Q ss_pred CcEEEccCCcccc-----cchhhhcCCCCceeecccccccC
Q 044748 501 LESLVLSNNKLER-----LPESFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 501 L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~l~~N~l~~ 536 (602)
|+.|+|++|.|+. ++..+..+++|++|++++|.|+.
T Consensus 213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 9999999999964 33456678999999999999987
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.00 E-value=6.6e-08 Score=96.77 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=73.7
Q ss_pred cccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhccccchhccCCCCe
Q 044748 377 SLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTS 456 (602)
Q Consensus 377 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~ 456 (602)
.+.....++.+.+..+ ........+..+..|+.+.+..+ ...+.. ..+..+.+|+.
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~---------------------~aF~~~~~l~~ 267 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGS---------------------FLLQNCTALKT 267 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECT---------------------TTTTTCTTCCE
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCc---------------------cccceeehhcc
Confidence 3444556666665543 22222334556666666666542 111111 04555666666
Q ss_pred EEeeccccccCCChhhhCCcccceEeecCcccccCc-ccccCCCCCcEEEccCCcccccch-hhhcCCCCceeecccc
Q 044748 457 LKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVP-ESLGQLSSLESLVLSNNKLERLPE-SFNQLSSLEYLQLFEN 532 (602)
Q Consensus 457 L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~N 532 (602)
+.+.. .........+.++.+|+.+.+.++.++.++ .+|.+|.+|+.+++..+ ++.+.. +|.++.+|+++.+..+
T Consensus 268 i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 268 LNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 66654 233333445666777777777777776664 46677777777777543 666654 4777777777766543
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=1.2e-09 Score=107.98 Aligned_cols=88 Identities=28% Similarity=0.209 Sum_probs=47.2
Q ss_pred hhccCCCCeEEeec-cccccCCChhhhCCcccceEeecCcccccCc-ccccCCCCCcEEEccCCcccccchh-hhcCCCC
Q 044748 448 LCMVKNLTSLKIID-CQKFKRLPNEIGNSKCLTVLIVKGTAIREVP-ESLGQLSSLESLVLSNNKLERLPES-FNQLSSL 524 (602)
Q Consensus 448 ~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L 524 (602)
+..+.+|+.|+|++ |.+.+..+..+..+++|++|+|++|.|+.++ ..|.++++|+.|+|++|+|+.+|.. +..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 44445555666654 5544444455555555666666666555443 2445555666666666665555543 32232 5
Q ss_pred ceeecccccccC
Q 044748 525 EYLQLFENSLEG 536 (602)
Q Consensus 525 ~~L~l~~N~l~~ 536 (602)
+.|++.+|++.+
T Consensus 106 ~~l~l~~N~~~c 117 (347)
T 2ifg_A 106 QELVLSGNPLHC 117 (347)
T ss_dssp CEEECCSSCCCC
T ss_pred eEEEeeCCCccC
Confidence 566666665554
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.85 E-value=3.9e-07 Score=91.11 Aligned_cols=284 Identities=13% Similarity=0.089 Sum_probs=152.9
Q ss_pred hhccccccEEeeeccCCCccCCcccCCCCCCcEEEcCcccccccccc-ccccccccEEeecCCCCccccccccccCCCCc
Q 044748 218 LCMFKSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRTAIREVPES-LGQLAILRRLKLTNCSGLESISSSIFKLKSLK 296 (602)
Q Consensus 218 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 296 (602)
+....+|+.+.+.. .+......+|.+|.+|+.+.+..+ ++.+.+. |.++ +|+.+.+..+ ...+........+|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCCcc
Confidence 33344555555543 233333344566666666666432 4444332 3333 4555554332 222222222223566
Q ss_pred EEEeecCCCccccccCCCCCCCCCcchhccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecCcccc----
Q 044748 297 SIVISHCSNFKRFLEIPSGNTDGSTRIERLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDGTAIR---- 372 (602)
Q Consensus 297 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~---- 372 (602)
++++... ++ .+....+.. .+++.+.+..+ ........+..+..++.+.+......
T Consensus 117 ~i~lp~~--~~-----------------~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~ 175 (379)
T 4h09_A 117 DFEFPGA--TT-----------------EIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAE 175 (379)
T ss_dssp EEECCTT--CC-----------------EECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEE
T ss_pred cccCCCc--cc-----------------ccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecc
Confidence 6665431 11 222222221 23444444331 12222234555566666655542211
Q ss_pred ---------cCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhhhhc
Q 044748 373 ---------EVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLASFK 443 (602)
Q Consensus 373 ---------~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (602)
.....+.....+..+.+... ........+..+.+|+.+.+... . ..+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~-~~i~~------------------- 233 (379)
T 4h09_A 176 NYVLYNKNKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-V-TTLGD------------------- 233 (379)
T ss_dssp TTEEEETTSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-C-CEECT-------------------
T ss_pred cceecccccceeccccccccccccccccc-eeEEeecccccccccceeeeccc-e-eEEcc-------------------
Confidence 11112333344555554443 22223345566777888877553 1 11111
Q ss_pred cccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCc-ccccCCCCCcEEEccCCcccccch-hhhcC
Q 044748 444 LRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVP-ESLGQLSSLESLVLSNNKLERLPE-SFNQL 521 (602)
Q Consensus 444 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l 521 (602)
..+..+..|+.+.+..+ ........+.++.+|+.+.+..+ ++.++ .+|.++++|+.+++.++.++.+++ +|.++
T Consensus 234 --~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c 309 (379)
T 4h09_A 234 --GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC 309 (379)
T ss_dssp --TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC
T ss_pred --ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCC
Confidence 15677889999999774 44455567788899999999764 66554 578899999999999999988875 59999
Q ss_pred CCCceeecccccccCCchhhhcccccccccccc
Q 044748 522 SSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLS 554 (602)
Q Consensus 522 ~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~ 554 (602)
.+|+.+.+.++ ++.|++.-+.-..+|+.+.++
T Consensus 310 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 310 VKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred CCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 99999999754 555554433333356665554
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=3.6e-09 Score=103.97 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=99.6
Q ss_pred cCCCCccEEEecCcccc----------cCCccccccccCcEEeccCCCCCCccCccccCCCCCCeEEeccCCCccccccC
Q 044748 356 GNLKVLKRLTIDGTAIR----------EVPKSLSQLAILRWLKLTNCSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKI 425 (602)
Q Consensus 356 ~~~~~L~~L~l~~n~i~----------~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 425 (602)
..+++|+.|.+...... .+...+..+|+|+.|++++|... .++. + ..++|++|++..|.+......
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~- 211 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE- 211 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH-
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH-
Confidence 34567777777553221 23344566788999998887322 2333 3 378899999887765432211
Q ss_pred CCCCCCCCcchhhhhhhccccchhccCCCCeEEeecc--cccc-----CCChhh--hCCcccceEeecCccccc-Ccccc
Q 044748 426 PSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDC--QKFK-----RLPNEI--GNSKCLTVLIVKGTAIRE-VPESL 495 (602)
Q Consensus 426 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~--~~~~-----~~~~~l--~~~~~L~~L~L~~n~l~~-l~~~~ 495 (602)
.+ ....+++|+.|+|+.+ ...+ .+...+ ..+++|++|++++|.++. .+..+
T Consensus 212 ------------~l-------~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l 272 (362)
T 2ra8_A 212 ------------DI-------LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272 (362)
T ss_dssp ------------HH-------HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred ------------HH-------HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence 00 1226788999988632 1111 111122 247899999999988862 22222
Q ss_pred ---cCCCCCcEEEccCCcccc-----cchhhhcCCCCceeecccccccC
Q 044748 496 ---GQLSSLESLVLSNNKLER-----LPESFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 496 ---~~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~l~~N~l~~ 536 (602)
..+++|++|+|+.|.++. ++..+..+++|+.|++++|.|+.
T Consensus 273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 357899999999999854 34445678999999999998876
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.84 E-value=7.2e-09 Score=102.46 Aligned_cols=103 Identities=21% Similarity=0.108 Sum_probs=62.6
Q ss_pred EEEecCc-ccccCCccccccccCcEEeccC-CCCCCccCccccCCCCCCeEEeccCCCccccccCCCCCCCCCcchhhhh
Q 044748 363 RLTIDGT-AIREVPKSLSQLAILRWLKLTN-CSGLGRISSSIFKLKSLKSIEISNCSNFKRFLKIPSCNIDGGTRIERLA 440 (602)
Q Consensus 363 ~L~l~~n-~i~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 440 (602)
.++.+++ .++.+|. +..+++|+.|+|++ |.+.+..+..|..+++|++|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N------------------------ 66 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS------------------------ 66 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS------------------------
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC------------------------
Confidence 4566665 6666666 66666666666664 5444433344555555555555554
Q ss_pred hhccccchhccCCCCeEEeeccccccCCChhhhCCcccceEeecCcccccCcccccCCCCCcEEEccCCccc
Q 044748 441 SFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIGNSKCLTVLIVKGTAIREVPESLGQLSSLESLVLSNNKLE 512 (602)
Q Consensus 441 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~ 512 (602)
.+.+..+..|..+++|+.|+|++|+|+.+|........|+.|++.+|.+.
T Consensus 67 ----------------------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 67 ----------------------GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp ----------------------CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ----------------------ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 44444455566677777777777777777654333333777777777774
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=8.1e-09 Score=101.48 Aligned_cols=182 Identities=14% Similarity=0.112 Sum_probs=117.6
Q ss_pred CCcccEEEEecCCCC---------ccCCccccCCCCccEEEecCcccccCCccccccccCcEEeccCCCCCCccCccc--
Q 044748 334 FKSLKYLEIVDCQNF---------KRLPDELGNLKVLKRLTIDGTAIREVPKSLSQLAILRWLKLTNCSGLGRISSSI-- 402 (602)
Q Consensus 334 ~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-- 402 (602)
+++|+.|.+...... +.+...+..+|+|++|.++++.-..++. + ..++|++|++..|.+.......+
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHH
Confidence 788999998654321 1233445678999999998873223443 3 37899999999886644332233
Q ss_pred cCCCCCCeEEeccCCCc-cccccCCCCCCCCCcchhhhhhhccccchhccCCCCeEEeeccccccCCChhhh---CCccc
Q 044748 403 FKLKSLKSIEISNCSNF-KRFLKIPSCNIDGGTRIERLASFKLRLDLCMVKNLTSLKIIDCQKFKRLPNEIG---NSKCL 478 (602)
Q Consensus 403 ~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L 478 (602)
..+|+|++|+++.+... ..-. .+..+... .....+++|+.|++.+|.+.+..+..+. .+++|
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~-----------~~~~l~~~---l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L 281 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDG-----------DMNVFRPL---FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCS-----------CGGGTGGG---SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGC
T ss_pred ccCCCCcEEEEeccccccccch-----------hHHHHHHH---HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCC
Confidence 36899999998642110 0000 00000000 0123579999999999887654433333 57899
Q ss_pred ceEeecCccccc-----CcccccCCCCCcEEEccCCccccc-chhhhc-CCCCceeeccccc
Q 044748 479 TVLIVKGTAIRE-----VPESLGQLSSLESLVLSNNKLERL-PESFNQ-LSSLEYLQLFENS 533 (602)
Q Consensus 479 ~~L~L~~n~l~~-----l~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~-l~~L~~L~l~~N~ 533 (602)
++|+|++|.++. ++..+..+++|+.|++++|.|+.- -..+.. + ..++++++++
T Consensus 282 ~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 999999999974 444456679999999999998532 223433 3 4678898887
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=9.1e-08 Score=84.68 Aligned_cols=90 Identities=16% Similarity=0.148 Sum_probs=57.7
Q ss_pred chhccCCCCeEEeeccccccC----CChhhhCCcccceEeecCccccc-----CcccccCCCCCcEEEc--cCCcccc--
Q 044748 447 DLCMVKNLTSLKIIDCQKFKR----LPNEIGNSKCLTVLIVKGTAIRE-----VPESLGQLSSLESLVL--SNNKLER-- 513 (602)
Q Consensus 447 ~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~L--~~n~l~~-- 513 (602)
.+...++|++|+|++|.+.+. +...+...++|++|+|++|.|+. +..++...++|+.|++ ++|.|+.
T Consensus 60 ~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g 139 (185)
T 1io0_A 60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV 139 (185)
T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH
Confidence 344556777777777765542 23344555677777777777762 4455666677777777 6677743
Q ss_pred ---cchhhhcCCCCceeecccccccC
Q 044748 514 ---LPESFNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 514 ---l~~~l~~l~~L~~L~l~~N~l~~ 536 (602)
+...+...++|++|++++|.+..
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 33445566777777777777653
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=8.3e-08 Score=84.96 Aligned_cols=90 Identities=17% Similarity=0.150 Sum_probs=73.1
Q ss_pred chhccCCCCeEEeecc-ccccC----CChhhhCCcccceEeecCcccc-----cCcccccCCCCCcEEEccCCcccc---
Q 044748 447 DLCMVKNLTSLKIIDC-QKFKR----LPNEIGNSKCLTVLIVKGTAIR-----EVPESLGQLSSLESLVLSNNKLER--- 513 (602)
Q Consensus 447 ~~~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~L~~n~l~~--- 513 (602)
.+...++|++|++++| .+... +...+...++|++|+|++|.++ .+...+...++|++|+|++|.|+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 5667899999999998 76552 3445667789999999999997 344566677899999999999954
Q ss_pred --cchhhhcCCCCceeec--ccccccC
Q 044748 514 --LPESFNQLSSLEYLQL--FENSLEG 536 (602)
Q Consensus 514 --l~~~l~~l~~L~~L~l--~~N~l~~ 536 (602)
+...+...++|++|++ ++|.|..
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 4556778899999999 8899986
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.14 E-value=1.5e-06 Score=80.75 Aligned_cols=65 Identities=25% Similarity=0.233 Sum_probs=46.4
Q ss_pred hCCcccceEeecCcccccCc---ccccCCCCCcEEEccCCcccccchhhhcCC--CCceeecccccccC-Cc
Q 044748 473 GNSKCLTVLIVKGTAIREVP---ESLGQLSSLESLVLSNNKLERLPESFNQLS--SLEYLQLFENSLEG-IP 538 (602)
Q Consensus 473 ~~~~~L~~L~L~~n~l~~l~---~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~--~L~~L~l~~N~l~~-~~ 538 (602)
..+++|+.|+|++|+|+.++ ..+..+++|+.|+|++|+|+.+. .+..+. +|++|++++|++.. +|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 45677888888888887554 44557788888888888887663 233333 78888888888876 54
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.96 E-value=7.7e-06 Score=75.94 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=64.6
Q ss_pred hccCCCCeEEeecccccc--CCChhhhCCcccceEeecCcccccCcccccCCC--CCcEEEccCCcc-cccc-------h
Q 044748 449 CMVKNLTSLKIIDCQKFK--RLPNEIGNSKCLTVLIVKGTAIREVPESLGQLS--SLESLVLSNNKL-ERLP-------E 516 (602)
Q Consensus 449 ~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~--~L~~L~L~~n~l-~~l~-------~ 516 (602)
..+++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.|+.+. .+..++ +|+.|+|++|.+ ..+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 568899999999999887 55677788999999999999999773 344444 999999999999 4454 2
Q ss_pred hhhcCCCCceeec
Q 044748 517 SFNQLSSLEYLQL 529 (602)
Q Consensus 517 ~l~~l~~L~~L~l 529 (602)
.+..+|+|+.||=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3667889988763
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=9.7e-06 Score=69.61 Aligned_cols=86 Identities=14% Similarity=0.250 Sum_probs=59.9
Q ss_pred ccccEEeeeccCCCccCCcccCCCCCCcEEEcCcc-ccccc-cccccc----cccccEEeecCCCCcc-ccccccccCCC
Q 044748 222 KSLTSLEIVDCQNFKRLPDELGNLKALQRLTVDRT-AIREV-PESLGQ----LAILRRLKLTNCSGLE-SISSSIFKLKS 294 (602)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l-~~~~~~----l~~L~~L~l~~~~~~~-~~~~~~~~l~~ 294 (602)
..|+.|++++|.++..--..+.++++|+.|++++| .|+.- -..+.. .++|++|++++|...+ .-...+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 36788888887765544445677888888888888 46621 111333 3579999999986443 33455677899
Q ss_pred CcEEEeecCCCcc
Q 044748 295 LKSIVISHCSNFK 307 (602)
Q Consensus 295 L~~L~l~~~~~~~ 307 (602)
|++|++++|+.++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999998777
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=1.7e-05 Score=68.15 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=15.9
Q ss_pred cccEEeecCCCCccccccccccCCCCcEEEeecCCCcc
Q 044748 270 ILRRLKLTNCSGLESISSSIFKLKSLKSIVISHCSNFK 307 (602)
Q Consensus 270 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 307 (602)
.|+.|++++|.+...-...+..+++|++|++++|..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It 99 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE 99 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC
Confidence 34444444444333222333344444444444444333
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.56 E-value=0.00011 Score=60.20 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=47.5
Q ss_pred ceEeecCcccc--cCcccccCCCCCcEEEccCCcccccchh-hhcCCCCceeecccccccC
Q 044748 479 TVLIVKGTAIR--EVPESLGQLSSLESLVLSNNKLERLPES-FNQLSSLEYLQLFENSLEG 536 (602)
Q Consensus 479 ~~L~L~~n~l~--~l~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~ 536 (602)
..++.+++.++ .+|..+. .+|+.|+|++|+|+.+|.. |..+++|+.|+|++|++.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47888899998 8887655 3799999999999988864 7889999999999999876
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.23 E-value=0.00023 Score=62.28 Aligned_cols=85 Identities=19% Similarity=0.152 Sum_probs=39.3
Q ss_pred hccCCCCeEEeecccccc----CCChhhhCCcccceEeecCcccc-----cCcccccCCCCCcEEEccCC---ccc----
Q 044748 449 CMVKNLTSLKIIDCQKFK----RLPNEIGNSKCLTVLIVKGTAIR-----EVPESLGQLSSLESLVLSNN---KLE---- 512 (602)
Q Consensus 449 ~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~L~~n---~l~---- 512 (602)
..-..|+.|+|++|.+.+ .+...+..-+.|++|+|++|.|+ .+-+++..-+.|+.|+|++| .++
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~ 146 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE 146 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence 334455555555555443 22223334455555555555554 22233334445555555543 222
Q ss_pred -ccchhhhcCCCCceeeccccc
Q 044748 513 -RLPESFNQLSSLEYLQLFENS 533 (602)
Q Consensus 513 -~l~~~l~~l~~L~~L~l~~N~ 533 (602)
.+.+.+...+.|+.|+++.|.
T Consensus 147 ~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 147 MDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhCCCcCeEeccCCC
Confidence 122334444555555555443
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.18 E-value=0.00013 Score=63.88 Aligned_cols=109 Identities=20% Similarity=0.109 Sum_probs=76.8
Q ss_pred chhccCCCCeEEeecc-cccc----CCChhhhCCcccceEeecCcccc-----cCcccccCCCCCcEEEccCCcccc---
Q 044748 447 DLCMVKNLTSLKIIDC-QKFK----RLPNEIGNSKCLTVLIVKGTAIR-----EVPESLGQLSSLESLVLSNNKLER--- 513 (602)
Q Consensus 447 ~~~~~~~L~~L~l~~~-~~~~----~~~~~l~~~~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~L~~n~l~~--- 513 (602)
....-+.|++|+|+++ .+.. .+...+..-..|+.|+|++|.|+ .+.+.+..-+.|+.|+|++|.|+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 4456688999999986 5443 34455677788999999999997 444556666899999999999853
Q ss_pred --cchhhhcCCCCceeecccc---cccC-----Cchhhhccccccccccccee
Q 044748 514 --LPESFNQLSSLEYLQLFEN---SLEG-----IPEYLRSLPSKLTSLNLSID 556 (602)
Q Consensus 514 --l~~~l~~l~~L~~L~l~~N---~l~~-----~~~~l~~~~~~L~~L~l~~~ 556 (602)
+.+.+...+.|++|+|++| .+.. +-+.+..-+ +|+.|+++.+
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~-tL~~L~l~~~ 167 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENE-SLLRVGISFA 167 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCS-SCCEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCC-CcCeEeccCC
Confidence 3345667788999999865 4442 222333333 7777776543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.15 E-value=0.00032 Score=57.31 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=48.4
Q ss_pred cEEEccCCccc--ccchhhhcCCCCceeecccccccCCchhhhcccccccccccceeeccc
Q 044748 502 ESLVLSNNKLE--RLPESFNQLSSLEYLQLFENSLEGIPEYLRSLPSKLTSLNLSIDLRYC 560 (602)
Q Consensus 502 ~~L~L~~n~l~--~l~~~l~~l~~L~~L~l~~N~l~~~~~~l~~~~~~L~~L~l~~~~~~~ 560 (602)
..++.++++++ .+|..+ .++|++|+|++|+|+.+|...+.-.++|+.|+++.|++.|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47999999998 999654 3479999999999999888765554599999999999987
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.33 E-value=16 Score=27.40 Aligned_cols=38 Identities=11% Similarity=-0.067 Sum_probs=25.4
Q ss_pred ccCCCCCcEEEcCCCcchhcchhhhccCCCCcEEeccCC
Q 044748 21 LSRAENLKILRLDDCLSLTETHSSIQYLNKLEFLTLEMC 59 (602)
Q Consensus 21 ~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~L~~L~l~~~ 59 (602)
|.+|..|+.+.+-. .+...-..+|.+|.+|+.+.+...
T Consensus 16 F~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 16 FAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred hcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence 77777787777766 233333456777777777777653
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.56 E-value=42 Score=25.11 Aligned_cols=43 Identities=9% Similarity=0.062 Sum_probs=21.7
Q ss_pred ccccccccCCCcccEEEEecCCCCccCCccccCCCCccEEEecC
Q 044748 325 RLASSNLCMFKSLKYLEIVDCQNFKRLPDELGNLKVLKRLTIDG 368 (602)
Q Consensus 325 ~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 368 (602)
.+....+.++.+|+.+.|-.. ....-...|.+|.+|+.+.+..
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 444445555566666666542 2222334455555666555544
Done!