BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044749
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 290 bits (742), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 150/311 (48%), Positives = 195/311 (62%), Gaps = 4/311 (1%)
Query: 73 EIVLENVLQFLTSRRDRNAASLVCKSWWRAEALTRSELFIGNCYAVSPDXXXXXXXXXXX 132
E VLE+V F+ +DRN+ SLVCKSW+ E R ++FIGNCYAVSP
Sbjct: 11 EEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRS 70
Query: 133 XXLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFS 192
LKGKP FADFNL+P WG + PW+ ++++Y WLE++ LKRM +TDD L L+A+SF
Sbjct: 71 VELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFK 130
Query: 193 GFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLI 252
FK L L CEGF T GLA IA+ CR L+ LDL E++V D W+S FP+ T L SL
Sbjct: 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN 190
Query: 253 FDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEV 312
C+ ++F ALE+LV R P L+ L+LNR V + +L L+ RAPQL LGTG Y
Sbjct: 191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY----T 246
Query: 313 AQRQGDTEPDYIAAFAACKSLVCLSGFREITPDYLSAIYPVCANLTSLNFSYATITADQL 372
A+ + D A + CK L CLSGF + P YL A+Y VC+ LT+LN SYAT+ + L
Sbjct: 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDL 306
Query: 373 KPVICNCHKLQ 383
++C C KLQ
Sbjct: 307 VKLLCQCPKLQ 317
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 149/313 (47%), Gaps = 11/313 (3%)
Query: 75 VLENVLQFLTSRRDRNAASLVCKSWWRAEALTRSELFIGNCYAVSPDXXXXXXXXXXXXX 134
V+E V+ ++T +DR++ASLVC+ W++ ++ TR + + CY +PD
Sbjct: 20 VIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLK 79
Query: 135 LKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFS-G 193
LKGKPR A FNL+P +WG + PWV ++N L+ V+ +RM ++D DL LA++ +
Sbjct: 80 LKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADD 139
Query: 194 FKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIF 253
+ L L C GF T GL I + CR+++ L + E+ ++ + W+ + T LE L F
Sbjct: 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNF 199
Query: 254 DCVDCA-INFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEV 312
+ A I+ + LE + L +++ I +L A L G
Sbjct: 200 YMTEFAKISPKDLETIARNCRSLVSVKVG-DFEILELVGFFKAAANLEEFCGGSLN---- 254
Query: 313 AQRQGDTEPDYIAAFAACKSLVCLSGFREITPDYLSAIYPVCANLTSLNFSYATITADQL 372
+ P+ + L C G + P+ + ++P A + L+ YA + +
Sbjct: 255 ---EDIGMPEKYMNLVFPRKL-CRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310
Query: 373 KPVICNCHKLQIF 385
+I C L++
Sbjct: 311 CTLIQKCPNLEVL 323
>pdb|3DGT|A Chain A, The 1.5 A Crystal Structure Of Endo-1,3-Beta-Glucanase
From Streptomyces Sioyaensis
Length = 280
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 301 HLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLSGFREITPDYLSAIYPVCANLTSL 360
H GT GP E I AC + C SGF T ++ ++ P +
Sbjct: 160 HCGTSPGGPCN--------ETSGIGNSTACPNTTCQSGFHTYTMEWDRSVSPEAIRFSVD 211
Query: 361 NFSYATITADQL 372
+Y T+TA+Q+
Sbjct: 212 GVTYQTVTANQM 223
>pdb|3B0M|A Chain A, M175k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 199 LVCCEGFGTCGLAFIASKCRQLRVLDLIETEVT 231
LV C G CG A I +K R L++ + ++ +V+
Sbjct: 466 LVACTGNQFCGQAIIETKARSLKITEEVQRQVS 498
>pdb|3B0J|A Chain A, M175e Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 199 LVCCEGFGTCGLAFIASKCRQLRVLDLIETEVT 231
LV C G CG A I +K R L++ + ++ +V+
Sbjct: 466 LVACTGNQFCGQAIIETKARSLKITEEVQRQVS 498
>pdb|3B0G|A Chain A, Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf
pdb|3VKP|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Low X-Ray Dose
pdb|3VKQ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Middle X-Ray Dose
pdb|3VKR|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With High X-Ray Dose
pdb|3VKS|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No Complex From
Tobbaco Leaf
pdb|3VKT|A Chain A, Assimilatory Nitrite Reductase (Nii3) - Nh2oh Complex From
Tobbaco Leaf
Length = 591
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 199 LVCCEGFGTCGLAFIASKCRQLRVLDLIETEVT 231
LV C G CG A I +K R L++ + ++ +V+
Sbjct: 466 LVACTGNQFCGQAIIETKARSLKITEEVQRQVS 498
>pdb|3VLX|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Ligand Free Form From Tobacco Leaf
pdb|3VLY|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Partial Complex From Tobacco Leaf
pdb|3VLZ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Full Complex From Tobacco Leaf
pdb|3VM0|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - No2
Complex From Tobacco Leaf
pdb|3VM1|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Hco3 Complex From Tobacco Leaf
Length = 584
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 199 LVCCEGFGTCGLAFIASKCRQLRVLDLIETEVT 231
LV C G CG A I +K R L++ + ++ +V+
Sbjct: 466 LVACTGNQFCGQAIIETKARSLKITEEVQRQVS 498
>pdb|3B0L|A Chain A, M175g Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 199 LVCCEGFGTCGLAFIASKCRQLRVLDLIETEVT 231
LV C G CG A I +K R L++ + ++ +V+
Sbjct: 466 LVACTGNQFCGQAIIETKARSLKITEEVQRQVS 498
>pdb|3B0N|A Chain A, Q448k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 199 LVCCEGFGTCGLAFIASKCRQLRVLDLIETEVT 231
LV C G CG A I +K R L++ + ++ +V+
Sbjct: 466 LVACTGNQFCGKAIIETKARSLKITEEVQRQVS 498
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 62 EYQSQYPDQVLEIVLENVLQFLTSRRDRNAASLVCKSWWRAEA 104
++ + P + L+ + EN+L +L ++ AA LVCK W+R +
Sbjct: 9 DFITALPARGLDHIAENILSYLDAK-SLCAAELVCKEWYRVTS 50
>pdb|1ZUW|A Chain A, Crystal Structure Of B.Subtilis Glutamate Racemase (Race)
With D-Glu
pdb|1ZUW|B Chain B, Crystal Structure Of B.Subtilis Glutamate Racemase (Race)
With D-Glu
pdb|1ZUW|C Chain C, Crystal Structure Of B.Subtilis Glutamate Racemase (Race)
With D-Glu
Length = 272
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 231 TDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVAR 271
T DE+ SL+P +T ++SLI C I EA+++ +
Sbjct: 161 TADEIVKTSLYPLKDTSIDSLILGCTHYPILKEAIQRYMGE 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,941,594
Number of Sequences: 62578
Number of extensions: 394958
Number of successful extensions: 922
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 11
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)