Query 044749
Match_columns 413
No_of_seqs 295 out of 2462
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 06:24:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 4.8E-28 1E-32 217.3 11.7 303 64-396 72-388 (483)
2 KOG2120 SCF ubiquitin ligase, 99.9 2.8E-25 6.1E-30 191.4 12.0 276 64-384 98-391 (419)
3 KOG4341 F-box protein containi 99.8 2.1E-21 4.5E-26 174.9 5.8 279 108-411 141-459 (483)
4 cd00116 LRR_RI Leucine-rich re 99.5 5.4E-13 1.2E-17 124.6 17.9 36 355-390 250-288 (319)
5 cd00116 LRR_RI Leucine-rich re 99.5 9.9E-13 2.1E-17 122.8 18.0 219 164-392 20-262 (319)
6 KOG1947 Leucine rich repeat pr 99.5 1.2E-13 2.6E-18 136.5 10.2 237 155-396 176-443 (482)
7 KOG1947 Leucine rich repeat pr 99.5 1.4E-13 3E-18 136.1 9.8 221 157-391 204-463 (482)
8 KOG2120 SCF ubiquitin ligase, 99.4 6.8E-14 1.5E-18 121.5 4.7 211 167-392 159-375 (419)
9 KOG1909 Ran GTPase-activating 99.4 3E-12 6.6E-17 113.8 11.9 253 122-392 24-310 (382)
10 PLN00113 leucine-rich repeat r 99.4 3E-12 6.5E-17 137.3 11.2 128 271-410 234-362 (968)
11 KOG1909 Ran GTPase-activating 99.3 1.8E-11 3.9E-16 108.9 12.2 208 165-381 90-326 (382)
12 PLN00113 leucine-rich repeat r 99.3 1.2E-11 2.5E-16 132.7 13.1 222 165-408 162-384 (968)
13 PLN03210 Resistant to P. syrin 99.0 1.8E-09 4E-14 116.8 11.1 34 272-305 777-810 (1153)
14 KOG3207 Beta-tubulin folding c 98.9 8.4E-10 1.8E-14 101.2 4.3 35 352-387 298-333 (505)
15 COG5238 RNA1 Ran GTPase-activa 98.8 8.1E-08 1.8E-12 83.1 12.0 102 155-257 19-131 (388)
16 KOG3207 Beta-tubulin folding c 98.8 2.8E-09 6.1E-14 97.8 1.9 58 352-410 268-332 (505)
17 KOG3665 ZYG-1-like serine/thre 98.7 3.4E-08 7.3E-13 99.9 8.8 165 166-391 121-286 (699)
18 KOG4194 Membrane glycoprotein 98.7 5.2E-09 1.1E-13 99.4 2.2 129 165-305 100-229 (873)
19 PLN03210 Resistant to P. syrin 98.7 3.1E-08 6.7E-13 107.4 7.2 129 246-395 778-908 (1153)
20 KOG4194 Membrane glycoprotein 98.7 2E-09 4.4E-14 102.0 -2.0 200 165-391 219-427 (873)
21 PF12937 F-box-like: F-box-lik 98.6 1.4E-08 3E-13 65.3 1.9 37 64-105 1-37 (47)
22 KOG0444 Cytoskeletal regulator 98.5 4E-09 8.7E-14 100.9 -5.0 219 167-413 173-397 (1255)
23 KOG3665 ZYG-1-like serine/thre 98.5 4.1E-07 8.9E-12 92.2 8.8 155 128-303 122-281 (699)
24 KOG0444 Cytoskeletal regulator 98.2 5.8E-08 1.2E-12 93.2 -4.6 131 246-394 222-353 (1255)
25 COG5238 RNA1 Ran GTPase-activa 98.2 3.4E-05 7.4E-10 67.2 12.2 198 191-395 29-257 (388)
26 PRK15387 E3 ubiquitin-protein 98.2 2.2E-05 4.7E-10 80.4 12.4 72 166-256 241-312 (788)
27 PF14580 LRR_9: Leucine-rich r 98.1 1.2E-06 2.6E-11 73.2 2.5 127 167-305 19-148 (175)
28 smart00256 FBOX A Receptor for 98.1 2.4E-06 5.3E-11 53.0 3.0 34 67-105 1-34 (41)
29 PF14580 LRR_9: Leucine-rich r 98.1 3.9E-06 8.5E-11 70.1 5.0 111 165-283 40-150 (175)
30 PRK15387 E3 ubiquitin-protein 98.1 1.7E-06 3.8E-11 88.2 3.3 54 167-231 262-315 (788)
31 PF00646 F-box: F-box domain; 98.0 1.2E-06 2.5E-11 56.6 0.1 37 64-105 3-39 (48)
32 KOG0618 Serine/threonine phosp 98.0 1.4E-06 3.1E-11 87.4 -0.2 203 165-391 262-487 (1081)
33 KOG3864 Uncharacterized conser 97.9 1.1E-05 2.3E-10 67.3 3.3 85 168-257 102-187 (221)
34 KOG2982 Uncharacterized conser 97.8 2.5E-05 5.5E-10 68.9 5.2 108 169-282 47-155 (418)
35 KOG1259 Nischarin, modulator o 97.7 1.7E-05 3.6E-10 70.1 2.5 208 161-391 176-410 (490)
36 KOG2982 Uncharacterized conser 97.7 2.7E-05 5.9E-10 68.7 3.3 138 160-305 64-207 (418)
37 KOG0472 Leucine-rich repeat pr 97.7 8.8E-06 1.9E-10 74.6 0.1 39 352-392 502-540 (565)
38 PRK15370 E3 ubiquitin-protein 97.5 0.00023 5E-09 73.2 6.7 33 355-391 346-378 (754)
39 KOG0618 Serine/threonine phosp 97.4 1.2E-05 2.6E-10 81.0 -2.9 128 217-366 358-487 (1081)
40 KOG4308 LRR-containing protein 97.3 4.4E-05 9.5E-10 74.3 -0.2 68 165-233 113-187 (478)
41 KOG4658 Apoptotic ATPase [Sign 97.3 0.00031 6.7E-09 73.5 5.0 220 165-406 543-796 (889)
42 KOG3864 Uncharacterized conser 97.1 0.00025 5.4E-09 59.3 1.8 69 327-396 121-192 (221)
43 KOG1859 Leucine-rich repeat pr 97.1 3.4E-05 7.3E-10 76.0 -3.9 49 352-402 251-299 (1096)
44 KOG1259 Nischarin, modulator o 97.1 0.00026 5.6E-09 62.8 1.8 124 166-306 283-408 (490)
45 KOG4308 LRR-containing protein 96.9 0.00061 1.3E-08 66.4 2.6 214 169-391 89-329 (478)
46 PF12799 LRR_4: Leucine Rich r 96.8 0.0014 3E-08 41.1 3.1 40 355-397 1-40 (44)
47 KOG4658 Apoptotic ATPase [Sign 96.8 0.00072 1.6E-08 70.9 2.7 111 163-282 567-677 (889)
48 KOG2123 Uncharacterized conser 96.8 0.0004 8.7E-09 61.0 0.5 105 166-281 18-125 (388)
49 PF13855 LRR_8: Leucine rich r 96.7 0.00051 1.1E-08 46.7 0.7 59 192-256 1-59 (61)
50 KOG2123 Uncharacterized conser 96.7 0.00064 1.4E-08 59.7 0.9 100 192-303 19-123 (388)
51 PRK15370 E3 ubiquitin-protein 96.6 0.0059 1.3E-07 63.1 7.3 56 167-231 241-296 (754)
52 smart00367 LRR_CC Leucine-rich 96.5 0.0024 5.2E-08 34.9 2.3 23 354-376 1-24 (26)
53 KOG4237 Extracellular matrix p 96.5 0.00069 1.5E-08 62.4 0.2 106 168-283 68-174 (498)
54 KOG0281 Beta-TrCP (transducin 96.3 0.0036 7.7E-08 56.3 3.1 43 61-104 72-114 (499)
55 PF12799 LRR_4: Leucine Rich r 96.2 0.0051 1.1E-07 38.5 2.9 38 192-232 1-38 (44)
56 KOG0617 Ras suppressor protein 96.2 0.00012 2.5E-09 59.6 -5.7 14 353-366 148-161 (264)
57 smart00367 LRR_CC Leucine-rich 96.2 0.0063 1.4E-07 33.2 2.8 24 191-214 1-24 (26)
58 PLN03150 hypothetical protein; 96.2 0.0073 1.6E-07 61.6 5.3 103 194-305 420-523 (623)
59 KOG2739 Leucine-rich acidic nu 95.8 0.0051 1.1E-07 53.8 2.0 41 192-232 65-105 (260)
60 PF13855 LRR_8: Leucine rich r 95.8 0.0094 2E-07 40.3 2.9 58 218-283 1-59 (61)
61 KOG2739 Leucine-rich acidic nu 95.8 0.0012 2.6E-08 57.5 -1.9 107 190-305 41-151 (260)
62 COG4886 Leucine-rich repeat (L 95.4 0.011 2.4E-07 56.9 3.1 81 167-257 116-197 (394)
63 KOG1859 Leucine-rich repeat pr 95.2 0.0095 2E-07 59.4 1.9 31 356-389 233-263 (1096)
64 PF13516 LRR_6: Leucine Rich r 95.1 0.015 3.3E-07 30.9 1.7 23 354-376 1-23 (24)
65 KOG0617 Ras suppressor protein 95.1 0.00016 3.5E-09 58.8 -9.0 14 215-228 76-89 (264)
66 KOG2997 F-box protein FBX9 [Ge 94.8 0.025 5.4E-07 50.7 3.2 40 62-105 105-148 (366)
67 PLN03215 ascorbic acid mannose 94.8 0.019 4.2E-07 53.7 2.6 37 64-104 4-40 (373)
68 PRK15386 type III secretion pr 94.6 0.027 5.8E-07 53.5 3.0 70 191-282 51-121 (426)
69 PF13516 LRR_6: Leucine Rich r 94.5 0.037 7.9E-07 29.4 2.2 22 167-188 2-23 (24)
70 PLN03150 hypothetical protein; 94.5 0.047 1E-06 55.8 4.7 106 169-283 420-525 (623)
71 KOG0531 Protein phosphatase 1, 93.8 0.0052 1.1E-07 59.5 -3.5 100 192-306 95-195 (414)
72 KOG1644 U2-associated snRNP A' 93.7 0.032 7E-07 47.0 1.3 13 217-229 87-99 (233)
73 KOG0472 Leucine-rich repeat pr 92.9 0.054 1.2E-06 50.5 1.7 105 189-306 432-537 (565)
74 KOG1644 U2-associated snRNP A' 92.8 0.11 2.4E-06 43.8 3.3 88 165-256 62-150 (233)
75 KOG4237 Extracellular matrix p 92.7 0.081 1.8E-06 49.2 2.5 87 164-257 271-357 (498)
76 COG4886 Leucine-rich repeat (L 92.4 0.17 3.6E-06 48.8 4.5 172 192-392 116-289 (394)
77 smart00368 LRR_RI Leucine rich 92.1 0.25 5.3E-06 27.4 3.1 25 167-191 2-26 (28)
78 PRK15386 type III secretion pr 91.7 0.078 1.7E-06 50.4 1.2 136 215-390 49-187 (426)
79 smart00368 LRR_RI Leucine rich 91.4 0.25 5.5E-06 27.3 2.6 23 355-377 2-24 (28)
80 KOG3763 mRNA export factor TAP 90.3 0.54 1.2E-05 45.8 5.4 92 185-280 211-308 (585)
81 KOG4579 Leucine-rich repeat (L 89.1 0.18 4E-06 39.9 1.1 11 272-282 99-109 (177)
82 PF13504 LRR_7: Leucine rich r 88.4 0.31 6.8E-06 23.4 1.3 11 381-391 2-12 (17)
83 PF07723 LRR_2: Leucine Rich R 88.3 0.53 1.1E-05 25.5 2.2 25 356-380 1-26 (26)
84 PF13013 F-box-like_2: F-box-l 87.9 0.81 1.7E-05 34.8 3.9 29 64-97 22-50 (109)
85 PF00560 LRR_1: Leucine Rich R 87.1 0.25 5.3E-06 25.5 0.5 18 381-399 1-18 (22)
86 KOG3763 mRNA export factor TAP 82.3 1.3 2.8E-05 43.3 3.3 98 155-252 206-307 (585)
87 KOG0274 Cdc4 and related F-box 81.7 0.63 1.4E-05 46.5 1.0 42 59-105 103-144 (537)
88 KOG4579 Leucine-rich repeat (L 80.3 1.4 3.1E-05 35.1 2.3 104 168-283 28-133 (177)
89 KOG3735 Tropomodulin and leiom 75.3 3.4 7.3E-05 37.9 3.5 79 155-234 186-271 (353)
90 KOG0531 Protein phosphatase 1, 72.1 1.2 2.6E-05 43.1 -0.0 79 216-305 70-148 (414)
91 smart00370 LRR Leucine-rich re 50.5 13 0.00029 19.6 1.6 15 218-232 2-16 (26)
92 smart00369 LRR_TYP Leucine-ric 50.5 13 0.00029 19.6 1.6 15 218-232 2-16 (26)
93 KOG0532 Leucine-rich repeat (L 46.0 4.2 9E-05 40.2 -1.4 56 333-390 213-270 (722)
94 KOG3926 F-box proteins [Amino 45.7 19 0.00041 32.1 2.6 35 62-100 200-234 (332)
95 smart00365 LRR_SD22 Leucine-ri 45.4 17 0.00038 19.6 1.5 13 355-367 2-14 (26)
96 KOG3735 Tropomodulin and leiom 40.0 39 0.00084 31.3 3.8 99 181-281 187-291 (353)
97 PF09372 PRANC: PRANC domain; 38.5 19 0.00042 26.7 1.5 25 62-91 70-94 (97)
98 PF03382 DUF285: Mycoplasma pr 32.9 29 0.00062 26.9 1.7 38 348-387 54-92 (120)
99 KOG0532 Leucine-rich repeat (L 26.5 26 0.00056 35.0 0.5 36 354-391 210-245 (722)
100 KOG1665 AFH1-interacting prote 26.2 25 0.00054 30.3 0.3 79 170-257 129-207 (302)
101 PF07735 FBA_2: F-box associat 24.2 1.5E+02 0.0033 20.0 4.0 32 356-387 33-69 (70)
102 PF13306 LRR_5: Leucine rich r 22.8 46 0.00099 25.6 1.2 78 293-389 8-90 (129)
103 smart00364 LRR_BAC Leucine-ric 20.0 60 0.0013 17.6 0.9 13 355-367 2-14 (26)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.95 E-value=4.8e-28 Score=217.35 Aligned_cols=303 Identities=20% Similarity=0.281 Sum_probs=239.2
Q ss_pred cCCCCcchHHHHHHHHHhhcCCcchhhHHHHHhHHHHHhhcCC--CCeEEeccc----ccCChhHHHhcCC-CccEEEec
Q 044749 64 QSQYPDQVLEIVLENVLQFLTSRRDRNAASLVCKSWWRAEALT--RSELFIGNC----YAVSPDRARGRFR-RVRSVVLK 136 (413)
Q Consensus 64 ~~~LP~e~~~~il~~Ifs~L~~~~d~~~~~~vcr~W~~~~~~~--~~~l~~~~~----~~~~~~~l~~~~~-~l~~l~l~ 136 (413)
...||.| ++..||++| +.+.+++++.+|+.|+..+.+. |.++..... .......+..|+. .++.+.+.
T Consensus 72 ~~~LPpE----l~lkvFS~L-Dtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlr 146 (483)
T KOG4341|consen 72 SRSLPPE----LLLKVFSML-DTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLR 146 (483)
T ss_pred cccCCHH----HHHHHHHHH-hHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhcccccccccc
Confidence 3469999 999999999 6999999999999999876543 222222211 1112244555553 67788888
Q ss_pred CCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCC-ccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHH
Q 044749 137 GKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRM-SITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIAS 215 (413)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~ 215 (413)
|+.... ...+..+...||+++.|++.++ .++|..+..+++.|++|+.|.|..|..+++..+..++.
T Consensus 147 G~r~v~-------------~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 147 GCRAVG-------------DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred ccccCC-------------cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 765433 3445567779999999999999 89999999999999999999999999999999999999
Q ss_pred hCCcCcEEEccccc-cccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccCh--HHHHHH
Q 044749 216 KCRQLRVLDLIETE-VTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSI--RQLYRL 292 (413)
Q Consensus 216 ~~~~L~~L~L~~~~-i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~--~~l~~l 292 (413)
.|++|+.|++++|. |++.+ +..+..+|..++.+.+.||. ...++.+..+...++-+.++++.+|..+ .++..+
T Consensus 214 gC~kL~~lNlSwc~qi~~~g---v~~~~rG~~~l~~~~~kGC~-e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i 289 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNG---VQALQRGCKELEKLSLKGCL-ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI 289 (483)
T ss_pred hhhhHHHhhhccCchhhcCc---chHHhccchhhhhhhhcccc-cccHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence 99999999999997 88888 88888899999999999997 7788888888888888888888787433 355666
Q ss_pred HhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc--CCcccChhhHhhHhhcCCCCCEEEeeccc-CCh
Q 044749 293 MVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS--GFREITPDYLSAIYPVCANLTSLNFSYAT-ITA 369 (413)
Q Consensus 293 l~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~--~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~-it~ 369 (413)
-..|..|+.|..++.... .+..+....+++.+|+.|. +|..+++.++..+..+|+.|+.|++..|. +++
T Consensus 290 ~~~c~~lq~l~~s~~t~~--------~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDI--------TDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred hhhhhHhhhhcccCCCCC--------chHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh
Confidence 667888888887643322 3455555666788888877 88888888888888888888888888888 777
Q ss_pred hhHHHHHhcCCCCCEEEeecccccCCC
Q 044749 370 DQLKPVICNCHKLQIFGPSIQYVMKDF 396 (413)
Q Consensus 370 ~~l~~l~~~~~~L~~L~l~~c~~i~d~ 396 (413)
..+..+..+|+.|+.|.++.|+.|+|.
T Consensus 362 ~tL~sls~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 362 GTLASLSRNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred hhHhhhccCCchhccCChhhhhhhhhh
Confidence 778888888888888888888888774
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.8e-25 Score=191.40 Aligned_cols=276 Identities=20% Similarity=0.269 Sum_probs=194.9
Q ss_pred cCCCCcchHHHHHHHHHhhcCCcchhhHHHHHhHHHHHhhcCCCCeEEeccccc-CCh---hHHHhcCCCccEEEec---
Q 044749 64 QSQYPDQVLEIVLENVLQFLTSRRDRNAASLVCKSWWRAEALTRSELFIGNCYA-VSP---DRARGRFRRVRSVVLK--- 136 (413)
Q Consensus 64 ~~~LP~e~~~~il~~Ifs~L~~~~d~~~~~~vcr~W~~~~~~~~~~l~~~~~~~-~~~---~~l~~~~~~l~~l~l~--- 136 (413)
+..|||| |+..||+.|+ .+++.+++.||||||++..+.+.|....-... ..| .++.+| .+..+.+.
T Consensus 98 ~~slpDE----ill~IFs~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~r--gV~v~Rlar~~ 170 (419)
T KOG2120|consen 98 WDSLPDE----ILLGIFSCLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSR--GVIVFRLARSF 170 (419)
T ss_pred cccCCHH----HHHHHHHhcc-HHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhC--CeEEEEcchhh
Confidence 6789999 9999999996 99999999999999999887666554432211 112 223332 12222221
Q ss_pred -CCCCCcccCC--------CCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCCh
Q 044749 137 -GKPRFADFNL--------MPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGT 207 (413)
Q Consensus 137 -~~~~~~~~~l--------~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~ 207 (413)
..|+++.... +.-.-.......+..+...|.+|+.|.+.+..++|.....+++. .+|+.|+|++|++++.
T Consensus 171 ~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~ 249 (419)
T KOG2120|consen 171 MDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTE 249 (419)
T ss_pred hcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccch
Confidence 1122211110 00001223556778888899999999999999999999999988 8999999999999999
Q ss_pred HHHHHHHHhCCcCcEEEccccccccccchh-hhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccCh
Q 044749 208 CGLAFIASKCRQLRVLDLIETEVTDDEVDW-ISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSI 286 (413)
Q Consensus 208 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~-l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 286 (413)
.++..+..+|..|.+|+|++|....+.+.. +..+. ++|+.|+|+|+.-......++.++++||+|.+||+++|+.+
T Consensus 250 n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his---e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 250 NALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS---ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred hHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc---hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence 999999999999999999999866555432 33333 58999999999656777788999999999999999998654
Q ss_pred H-HHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCcccccCCcccChhhHhhHhhcCCCCCEEEeecc
Q 044749 287 R-QLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLSGFREITPDYLSAIYPVCANLTSLNFSYA 365 (413)
Q Consensus 287 ~-~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~~~~~i~~~~l~~l~~~~~~L~~L~Ls~~ 365 (413)
. +....+-.++.|++|.++. |..+.++.+..+ ...+.|++|++-+|
T Consensus 327 ~~~~~~~~~kf~~L~~lSlsR--------------------------------CY~i~p~~~~~l-~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 327 KNDCFQEFFKFNYLQHLSLSR--------------------------------CYDIIPETLLEL-NSKPSLVYLDVFGC 373 (419)
T ss_pred CchHHHHHHhcchheeeehhh--------------------------------hcCCChHHeeee-ccCcceEEEEeccc
Confidence 4 4555666677777777764 223333333333 34577888887766
Q ss_pred cCChhhHHHHHhcCCCCCE
Q 044749 366 TITADQLKPVICNCHKLQI 384 (413)
Q Consensus 366 ~it~~~l~~l~~~~~~L~~ 384 (413)
++|..+.-+...||+|+.
T Consensus 374 -vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 374 -VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred -cCchHHHHHHHhCccccc
Confidence 444455556666776653
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.84 E-value=2.1e-21 Score=174.89 Aligned_cols=279 Identities=22% Similarity=0.258 Sum_probs=201.2
Q ss_pred CeEEecccccC---ChhHHHhcCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCC-ccCHHH
Q 044749 108 SELFIGNCYAV---SPDRARGRFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRM-SITDDD 183 (413)
Q Consensus 108 ~~l~~~~~~~~---~~~~l~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~l~~~~ 183 (413)
+.+....+.++ ....+...+|++++|.+.||..+++. .+..+.+.|++|+.|++..| .+++..
T Consensus 141 k~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~-------------s~~sla~~C~~l~~l~L~~c~~iT~~~ 207 (483)
T KOG4341|consen 141 KELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDS-------------SLLSLARYCRKLRHLNLHSCSSITDVS 207 (483)
T ss_pred ccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHH-------------HHHHHHHhcchhhhhhhcccchhHHHH
Confidence 34444444332 34678889999999999998876553 33455566677777777665 666666
Q ss_pred HHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEE--------------------------Eccccc-cccccch
Q 044749 184 LALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVL--------------------------DLIETE-VTDDEVD 236 (413)
Q Consensus 184 l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L--------------------------~L~~~~-i~~~~~~ 236 (413)
+..+++.|++|++|++++|+.++..++..+..+|++|+++ ++..|. ++|+.
T Consensus 208 Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~-- 285 (483)
T KOG4341|consen 208 LKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED-- 285 (483)
T ss_pred HHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH--
Confidence 6666777777777777766666655555555555554444 444444 66666
Q ss_pred hhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChH--HHHHHHhcCCCCceecccCcCCCcccc
Q 044749 237 WISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIR--QLYRLMVRAPQLTHLGTGKYGPSEVAQ 314 (413)
Q Consensus 237 ~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~--~l~~ll~~~p~L~~L~l~~~~~~~~~~ 314 (413)
+..+...|..|+.|..++|. .+++..+..+.+++++|+.|-+..|..++ ++..+-.+++.|+.++++.....
T Consensus 286 -~~~i~~~c~~lq~l~~s~~t-~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~---- 359 (483)
T KOG4341|consen 286 -LWLIACGCHALQVLCYSSCT-DITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI---- 359 (483)
T ss_pred -HHHHhhhhhHhhhhcccCCC-CCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee----
Confidence 55555678899999999998 59999999999999999999999996555 45667788999999999854432
Q ss_pred cCCCChhhHHHHHhhCCCccccc--CCcccChhhHhhHhh---cCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeec
Q 044749 315 RQGDTEPDYIAAFAACKSLVCLS--GFREITPDYLSAIYP---VCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSI 389 (413)
Q Consensus 315 ~~g~~~~~~~~~~~~~~~L~~L~--~~~~i~~~~l~~l~~---~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~ 389 (413)
.+..+.....+|+.|+.|+ .|..++|+++..+.. ....|..|.|.+|+.+.+...+.+..|++||.+++.+
T Consensus 360 ----~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 360 ----TDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred ----hhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 3556788888899999998 777899998777754 2378999999999944445556678999999999999
Q ss_pred ccccCC--Cchhhhhccccccccc
Q 044749 390 QYVMKD--FRPWLQRAKNFVNFGF 411 (413)
Q Consensus 390 c~~i~d--~~~~~~~~~~~~~~~~ 411 (413)
|..++. ..++.+++.|......
T Consensus 436 ~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 436 CQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhhhhhhhhHHHHhhCccceehhh
Confidence 998864 3455555555554443
No 4
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=5.4e-13 Score=124.63 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=15.6
Q ss_pred CCCCEEEeecccCChhhHHHH---HhcCCCCCEEEeecc
Q 044749 355 ANLTSLNFSYATITADQLKPV---ICNCHKLQIFGPSIQ 390 (413)
Q Consensus 355 ~~L~~L~Ls~~~it~~~l~~l---~~~~~~L~~L~l~~c 390 (413)
+.|++|++++|.+++.+...+ +..+++|+.|+++++
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 345555555555443333222 223344555555444
No 5
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.51 E-value=9.9e-13 Score=122.84 Aligned_cols=219 Identities=20% Similarity=0.180 Sum_probs=149.6
Q ss_pred hhCCCCcEEeeeCCccCHHHHHHHHH---hCCCCcEEEeCCCCCCC--hHHHH---HHHHhCCcCcEEEccccccccccc
Q 044749 164 NAYPWLEKVYLKRMSITDDDLALLAE---SFSGFKELTLVCCEGFG--TCGLA---FIASKCRQLRVLDLIETEVTDDEV 235 (413)
Q Consensus 164 ~~~~~L~~L~L~~~~l~~~~l~~l~~---~~~~L~~L~L~~c~~~~--~~~l~---~~~~~~~~L~~L~L~~~~i~~~~~ 235 (413)
....+|+.|+++++.+++.++..+.. ..++|+.|.++++ .+. ..++. .....+++|+.|++++|.+.+...
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 34566999999999888776655554 3456899999887 444 33332 334457799999999998876555
Q ss_pred hhhhccCccCCCcceEEeccccCCCCHHHHHHHH---HhC-CCCcEEEcccccCh----HHHHHHHhcCCCCceecccCc
Q 044749 236 DWISLFPEGETCLESLIFDCVDCAINFEALEKLV---ARS-PFLRKLRLNRHVSI----RQLYRLMVRAPQLTHLGTGKY 307 (413)
Q Consensus 236 ~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~---~~~-~~L~~L~l~~~~~~----~~l~~ll~~~p~L~~L~l~~~ 307 (413)
..+..+... ++|++|+++++. +++.++..+. ..+ ++|+.|++++|.-. ..+...+..+++|++|+++..
T Consensus 99 ~~~~~l~~~-~~L~~L~ls~~~--~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 99 GVLESLLRS-SSLQELKLNNNG--LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred HHHHHHhcc-CcccEEEeeCCc--cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 556666655 679999999885 4444444332 234 88999999988321 234556677889999998743
Q ss_pred CCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhH---hhcCCCCCEEEeecccCChhhHHHHHhcC----
Q 044749 308 GPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAI---YPVCANLTSLNFSYATITADQLKPVICNC---- 379 (413)
Q Consensus 308 ~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l---~~~~~~L~~L~Ls~~~it~~~l~~l~~~~---- 379 (413)
.... .....+...+...++|+.|. ....+++.....+ ...+++|++|++++|.+++.++..+...+
T Consensus 176 ~l~~------~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~ 249 (319)
T cd00116 176 GIGD------AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPN 249 (319)
T ss_pred CCch------HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccC
Confidence 2210 01122333444556888888 3336666554433 35678999999999999998888877664
Q ss_pred CCCCEEEeecccc
Q 044749 380 HKLQIFGPSIQYV 392 (413)
Q Consensus 380 ~~L~~L~l~~c~~ 392 (413)
++|++|++.+|..
T Consensus 250 ~~L~~L~l~~n~i 262 (319)
T cd00116 250 ISLLTLSLSCNDI 262 (319)
T ss_pred CCceEEEccCCCC
Confidence 7999999999964
No 6
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.48 E-value=1.2e-13 Score=136.53 Aligned_cols=237 Identities=27% Similarity=0.276 Sum_probs=175.7
Q ss_pred chHHHHHHHhhCCCCcEEeeeCC-ccCHHHHHHHHHhCCCCcEEEeCC-CCCCChHH--HHHHHHhCCcCcEEEccccc-
Q 044749 155 FGPWVCVLANAYPWLEKVYLKRM-SITDDDLALLAESFSGFKELTLVC-CEGFGTCG--LAFIASKCRQLRVLDLIETE- 229 (413)
Q Consensus 155 ~~~~l~~l~~~~~~L~~L~L~~~-~l~~~~l~~l~~~~~~L~~L~L~~-c~~~~~~~--l~~~~~~~~~L~~L~L~~~~- 229 (413)
...++..+...+++|++|.+.++ .+++..+..++..+++|+.|.+++ |......+ ...+...|++|+.|++.++.
T Consensus 176 ~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 255 (482)
T KOG1947|consen 176 LDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL 255 (482)
T ss_pred cHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc
Confidence 55666777777999999999998 888888888999999999999998 33333332 44577789999999999998
Q ss_pred cccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccCh--HHHHHHHhcCCCCceecccCc
Q 044749 230 VTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSI--RQLYRLMVRAPQLTHLGTGKY 307 (413)
Q Consensus 230 i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~--~~l~~ll~~~p~L~~L~l~~~ 307 (413)
++|.+ +..+...|++|+.|.+.+|. .+++.++..+...|++|++|+++.|..+ .++..+...|++|+.|.+...
T Consensus 256 isd~~---l~~l~~~c~~L~~L~l~~c~-~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 256 VTDIG---LSALASRCPNLETLSLSNCS-NLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred cCchh---HHHHHhhCCCcceEccCCCC-ccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 99998 77777779999999988887 5899999999999999999999999654 357777778999888876543
Q ss_pred CC--CcccccC----CCC-hhhHHHHHhhCCCccccc--CCcccChhhHhhHhhcCCC--------------CCEEEeec
Q 044749 308 GP--SEVAQRQ----GDT-EPDYIAAFAACKSLVCLS--GFREITPDYLSAIYPVCAN--------------LTSLNFSY 364 (413)
Q Consensus 308 ~~--~~~~~~~----g~~-~~~~~~~~~~~~~L~~L~--~~~~i~~~~l~~l~~~~~~--------------L~~L~Ls~ 364 (413)
.. ......+ ... +.........|++|+.+. .+. .++..+..+...|++ ++.|+++.
T Consensus 332 ~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~ 410 (482)
T KOG1947|consen 332 NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSD 410 (482)
T ss_pred CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCccceEeccc
Confidence 32 0000000 011 234444556677777766 443 444444444445544 48888888
Q ss_pred cc-CChhhHHHHHhcCCCCCEEEeecccccCCC
Q 044749 365 AT-ITADQLKPVICNCHKLQIFGPSIQYVMKDF 396 (413)
Q Consensus 365 ~~-it~~~l~~l~~~~~~L~~L~l~~c~~i~d~ 396 (413)
|. +++..+......|.+++.+.+.+|..+++.
T Consensus 411 ~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 411 CRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred CccccccchHHHhhhhhccccCCccCcccccch
Confidence 88 888888877666888999999999887753
No 7
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.47 E-value=1.4e-13 Score=136.14 Aligned_cols=221 Identities=26% Similarity=0.338 Sum_probs=162.0
Q ss_pred HHHHHHHhhCCCCcEEeeeC-C-cc--CHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccc-cc
Q 044749 157 PWVCVLANAYPWLEKVYLKR-M-SI--TDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETE-VT 231 (413)
Q Consensus 157 ~~l~~l~~~~~~L~~L~L~~-~-~l--~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~ 231 (413)
.++..+...+++|++|++++ + .+ .......+...+++|+.|++++|..+++.++..++..|++|++|.+.+|. ++
T Consensus 204 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 204 DSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLT 283 (482)
T ss_pred hhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccc
Confidence 34667777899999999987 2 22 23334457778889999999999669999999999999999999988887 89
Q ss_pred cccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEccccc---ChH--------------HHHHHHh
Q 044749 232 DDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHV---SIR--------------QLYRLMV 294 (413)
Q Consensus 232 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~---~~~--------------~l~~ll~ 294 (413)
+++ +..+...|++|++|++++|. .+++.++..+...|++|+.|.+..+. .+. .....+.
T Consensus 284 ~~g---l~~i~~~~~~L~~L~l~~c~-~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~ 359 (482)
T KOG1947|consen 284 DEG---LVSIAERCPSLRELDLSGCH-GLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILR 359 (482)
T ss_pred hhH---HHHHHHhcCcccEEeeecCc-cchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHh
Confidence 999 88888889999999999998 67888888888889988887765442 121 1233446
Q ss_pred cCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCc--------------cccc--CCcccChhhHhhHhhcCCCCC
Q 044749 295 RAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSL--------------VCLS--GFREITPDYLSAIYPVCANLT 358 (413)
Q Consensus 295 ~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L--------------~~L~--~~~~i~~~~l~~l~~~~~~L~ 358 (413)
.+++|+++.+.... . .+........+|++| +.|. .+...++..+......|.+++
T Consensus 360 ~~~~l~~~~l~~~~-~--------~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~ 430 (482)
T KOG1947|consen 360 SCPKLTDLSLSYCG-I--------SDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLK 430 (482)
T ss_pred cCCCcchhhhhhhh-c--------cCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccc
Confidence 78999999987433 2 122223444555544 5555 565677777777765588999
Q ss_pred EEEeeccc-CChhhHHHHHhcCCCCCEEEeeccc
Q 044749 359 SLNFSYAT-ITADQLKPVICNCHKLQIFGPSIQY 391 (413)
Q Consensus 359 ~L~Ls~~~-it~~~l~~l~~~~~~L~~L~l~~c~ 391 (413)
.+++.++. ++...+..+...+ .+....+..+.
T Consensus 431 ~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 463 (482)
T KOG1947|consen 431 DLDLSGCRVITLKSLEGFASNC-DLISLDVGLKL 463 (482)
T ss_pred cCCccCcccccchhhhhhhccc-cccccccccce
Confidence 99999999 8888877766665 56555555443
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=6.8e-14 Score=121.52 Aligned_cols=211 Identities=19% Similarity=0.156 Sum_probs=156.6
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCC-CCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFS-GFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGE 245 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~-~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~ 245 (413)
.....+.+....+.+..+.....-+. .|+.|+|++. .++...+..+...|.+|+.|.|+++.+.|..+..+.. .
T Consensus 159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk----N 233 (419)
T KOG2120|consen 159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK----N 233 (419)
T ss_pred CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc----c
Confidence 45555666555555443433333333 5999999987 8888888889999999999999999998887444443 4
Q ss_pred CCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHH-HHHHhc-CCCCceecccCcCCCcccccCCCChhhH
Q 044749 246 TCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQL-YRLMVR-APQLTHLGTGKYGPSEVAQRQGDTEPDY 323 (413)
Q Consensus 246 ~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l-~~ll~~-~p~L~~L~l~~~~~~~~~~~~g~~~~~~ 323 (413)
.+|+.|+|++|. .++..++..+...|..|..|+++.|...... ..+..+ -++|+.|++++|... .....+
T Consensus 234 ~~L~~lnlsm~s-G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn-------l~~sh~ 305 (419)
T KOG2120|consen 234 SNLVRLNLSMCS-GFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN-------LQKSHL 305 (419)
T ss_pred ccceeecccccc-ccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh-------hhhhHH
Confidence 499999999998 6778888889999999999999998544333 333333 788999999877554 234566
Q ss_pred HHHHhhCCCccccc--CCcccChhhHhhHhhcCCCCCEEEeeccc-CChhhHHHHHhcCCCCCEEEeecccc
Q 044749 324 IAAFAACKSLVCLS--GFREITPDYLSAIYPVCANLTSLNFSYAT-ITADQLKPVICNCHKLQIFGPSIQYV 392 (413)
Q Consensus 324 ~~~~~~~~~L~~L~--~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~-it~~~l~~l~~~~~~L~~L~l~~c~~ 392 (413)
....+.|++|..|. .+..+++..+..+ ..++.|++|.++.|. |..+.+.++ ...|.|.+|++.||-.
T Consensus 306 ~tL~~rcp~l~~LDLSD~v~l~~~~~~~~-~kf~~L~~lSlsRCY~i~p~~~~~l-~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 306 STLVRRCPNLVHLDLSDSVMLKNDCFQEF-FKFNYLQHLSLSRCYDIIPETLLEL-NSKPSLVYLDVFGCVS 375 (419)
T ss_pred HHHHHhCCceeeeccccccccCchHHHHH-HhcchheeeehhhhcCCChHHeeee-ccCcceEEEEeccccC
Confidence 66777888888887 6667777544444 578889999999988 877777765 5778999999988854
No 9
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.40 E-value=3e-12 Score=113.80 Aligned_cols=253 Identities=17% Similarity=0.177 Sum_probs=132.3
Q ss_pred HHHhcCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCc---cCHHH---HHHHH---HhCC
Q 044749 122 RARGRFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMS---ITDDD---LALLA---ESFS 192 (413)
Q Consensus 122 ~l~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~---l~~~~---l~~l~---~~~~ 192 (413)
.....+..++.++++|.. +|.-...|+.....+.++|++.+++.+. ..++. +..++ ..+|
T Consensus 24 ~~~~~~~s~~~l~lsgnt-----------~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~ 92 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNT-----------FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCP 92 (382)
T ss_pred HHhcccCceEEEeccCCc-----------hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCC
Confidence 344455566666666532 3334455665555566667777766552 22222 11222 2235
Q ss_pred CCcEEEeCCCCCCChHH---HHHHHHhCCcCcEEEccccccccccchhhh---------ccCccCCCcceEEecccc-CC
Q 044749 193 GFKELTLVCCEGFGTCG---LAFIASKCRQLRVLDLIETEVTDDEVDWIS---------LFPEGETCLESLIFDCVD-CA 259 (413)
Q Consensus 193 ~L~~L~L~~c~~~~~~~---l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~---------~l~~~~~~L~~L~L~~~~-~~ 259 (413)
+|++|+|+.+ .++..+ +..+..+|..|++|.|.+|.++..+...+. .....-+.|+.+....+. ..
T Consensus 93 ~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 93 KLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred ceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 6777777665 555443 344555677777777776666655433321 122234566666665552 12
Q ss_pred CCHHHHHHHHHhCCCCcEEEccccc----ChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccc
Q 044749 260 INFEALEKLVARSPFLRKLRLNRHV----SIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVC 335 (413)
Q Consensus 260 ~~~~~l~~l~~~~~~L~~L~l~~~~----~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~ 335 (413)
-+...+....+.+|.|+.+++..+. .+..+..-+.+||+|+.|++....-.. .....+...+..+++|+.
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~------egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL------EGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh------HHHHHHHHHhcccchhee
Confidence 2233444555556777777666541 122345555667777777765311000 123344455555666666
Q ss_pred cc-CCcccChhhHhhHh----hcCCCCCEEEeecccCChhhHHHH---HhcCCCCCEEEeecccc
Q 044749 336 LS-GFREITPDYLSAIY----PVCANLTSLNFSYATITADQLKPV---ICNCHKLQIFGPSIQYV 392 (413)
Q Consensus 336 L~-~~~~i~~~~l~~l~----~~~~~L~~L~Ls~~~it~~~l~~l---~~~~~~L~~L~l~~c~~ 392 (413)
|+ +...+.+.+..++. ...++|+.|.+.||.|+.++...+ +..-|.|+.|.|++|..
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 66 22244444443333 334677777777777666554433 23356677777777654
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.35 E-value=3e-12 Score=137.26 Aligned_cols=128 Identities=12% Similarity=0.045 Sum_probs=70.3
Q ss_pred hCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhh
Q 044749 271 RSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSA 349 (413)
Q Consensus 271 ~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~ 349 (413)
.+++|++|+++++.....+...+..+++|+.|+++.... ...+...+..+++|+.|. ....+... ++.
T Consensus 234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l----------~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~ 302 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL----------SGPIPPSIFSLQKLISLDLSDNSLSGE-IPE 302 (968)
T ss_pred cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee----------eccCchhHhhccCcCEEECcCCeeccC-CCh
Confidence 355666666655432223334455556666666552111 111222334556666665 22233322 233
Q ss_pred HhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCCCchhhhhcccccccc
Q 044749 350 IYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKDFRPWLQRAKNFVNFG 410 (413)
Q Consensus 350 l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~~~~~~~~~~~~~~ 410 (413)
....+++|+.|++++|.++... ...+..+++|+.|++.+|....+.+.++..+.++..+.
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKI-PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcC-ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 3356678888888887765432 23356788888888888876556666666666655544
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.32 E-value=1.8e-11 Score=108.93 Aligned_cols=208 Identities=20% Similarity=0.232 Sum_probs=128.1
Q ss_pred hCCCCcEEeeeCCccCHHHHH---HHHHhCCCCcEEEeCCCCCCChHHHHHHH------------HhCCcCcEEEccccc
Q 044749 165 AYPWLEKVYLKRMSITDDDLA---LLAESFSGFKELTLVCCEGFGTCGLAFIA------------SKCRQLRVLDLIETE 229 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~---~l~~~~~~L~~L~L~~c~~~~~~~l~~~~------------~~~~~L~~L~L~~~~ 229 (413)
.||.|+.|+|+.+-++..++. .+..++.+|+.|.|.+| +++..+-..+. .+-+.|+++...+|.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 467788888887766655443 34455566888888887 77765533322 134677888877777
Q ss_pred cccccchhhhccCccCCCcceEEeccccCCCCHHH---HHHHHHhCCCCcEEEcccccC----hHHHHHHHhcCCCCcee
Q 044749 230 VTDDEVDWISLFPEGETCLESLIFDCVDCAINFEA---LEKLVARSPFLRKLRLNRHVS----IRQLYRLMVRAPQLTHL 302 (413)
Q Consensus 230 i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~----~~~l~~ll~~~p~L~~L 302 (413)
+.+.+...+......++.|+.+.+..+. |..++ +..-...||+|+.|++..+.- ...+...+..+|+|+.|
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~--I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNG--IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEeccc--ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 7777766666655566788888776663 33332 333344578888888877521 11355666777788888
Q ss_pred cccCcCCCcccccCCCChhhHHHHHhh-CCCccccc-CCcccChhhHhhHhhc---CCCCCEEEeecccC--ChhhHHHH
Q 044749 303 GTGKYGPSEVAQRQGDTEPDYIAAFAA-CKSLVCLS-GFREITPDYLSAIYPV---CANLTSLNFSYATI--TADQLKPV 375 (413)
Q Consensus 303 ~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~L~~L~-~~~~i~~~~l~~l~~~---~~~L~~L~Ls~~~i--t~~~l~~l 375 (413)
.++.+.... .....+..++.. .++|+.|. .++.++-+....+... -+.|..|+|++|.+ .++++..+
T Consensus 247 ~l~dcll~~------~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei 320 (382)
T KOG1909|consen 247 NLGDCLLEN------EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEI 320 (382)
T ss_pred ccccccccc------ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHH
Confidence 877433322 223444444433 56777777 5546666555544322 36777888888877 66777777
Q ss_pred HhcCCC
Q 044749 376 ICNCHK 381 (413)
Q Consensus 376 ~~~~~~ 381 (413)
...++-
T Consensus 321 ~~~~~~ 326 (382)
T KOG1909|consen 321 ASKFDT 326 (382)
T ss_pred HHhccc
Confidence 666543
No 12
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.32 E-value=1.2e-11 Score=132.74 Aligned_cols=222 Identities=12% Similarity=0.043 Sum_probs=118.3
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+++|+.|+++++.+.......+.. +++|++|+|++| .+... +.....++++|++|+|.+|.+....+..+..
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~---- 234 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASN-QLVGQ-IPRELGQMKSLKWIYLGYNNLSGEIPYEIGG---- 234 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhh-CcCCCeeeccCC-CCcCc-CChHHcCcCCccEEECcCCccCCcCChhHhc----
Confidence 3455555555555433222222222 355666666555 32211 1122344566666666666655444333333
Q ss_pred CCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHH
Q 044749 245 ETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYI 324 (413)
Q Consensus 245 ~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~ 324 (413)
+++|++|++.++. +... +......+++|+.|+++++.....+...+..+++|++|+++.... ...+.
T Consensus 235 l~~L~~L~L~~n~--l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l----------~~~~p 301 (968)
T PLN00113 235 LTSLNHLDLVYNN--LTGP-IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL----------SGEIP 301 (968)
T ss_pred CCCCCEEECcCce--eccc-cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee----------ccCCC
Confidence 3478888877764 1111 111223477888888887642233344556678888888863211 11223
Q ss_pred HHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCCCchhhhhc
Q 044749 325 AAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKDFRPWLQRA 403 (413)
Q Consensus 325 ~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~~~~~~~ 403 (413)
..+..+++|+.|. ..+.++... +.....+++|+.|+|++|.++... ...+..+++|+.|++++|......+.++..+
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~ 379 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTGKI-PVALTSLPRLQVLQLWSNKFSGEI-PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS 379 (968)
T ss_pred hhHcCCCCCcEEECCCCccCCcC-ChhHhcCCCCCEEECcCCCCcCcC-ChHHhCCCCCcEEECCCCeeEeeCChhHhCc
Confidence 3445677777776 332443322 222346788888888888765432 3335677888888888876544444454444
Q ss_pred ccccc
Q 044749 404 KNFVN 408 (413)
Q Consensus 404 ~~~~~ 408 (413)
.++..
T Consensus 380 ~~L~~ 384 (968)
T PLN00113 380 GNLFK 384 (968)
T ss_pred CCCCE
Confidence 44433
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.99 E-value=1.8e-09 Score=116.82 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=21.7
Q ss_pred CCCCcEEEcccccChHHHHHHHhcCCCCceeccc
Q 044749 272 SPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTG 305 (413)
Q Consensus 272 ~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~ 305 (413)
+++|+.|++++|.....+...+..+++|++|++.
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls 810 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE 810 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECC
Confidence 3566777776664444455556667777777776
No 14
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=8.4e-10 Score=101.15 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=19.7
Q ss_pred hcCCCCCEEEeecccC-ChhhHHHHHhcCCCCCEEEe
Q 044749 352 PVCANLTSLNFSYATI-TADQLKPVICNCHKLQIFGP 387 (413)
Q Consensus 352 ~~~~~L~~L~Ls~~~i-t~~~l~~l~~~~~~L~~L~l 387 (413)
..+++|+.|++..|+| ....+..+ ...++|++|.+
T Consensus 298 ~~f~kL~~L~i~~N~I~~w~sl~~l-~~l~nlk~l~~ 333 (505)
T KOG3207|consen 298 HTFPKLEYLNISENNIRDWRSLNHL-RTLENLKHLRI 333 (505)
T ss_pred cccccceeeecccCccccccccchh-hccchhhhhhc
Confidence 3457777777777774 33444332 34455555553
No 15
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.80 E-value=8.1e-08 Score=83.14 Aligned_cols=102 Identities=19% Similarity=0.155 Sum_probs=70.8
Q ss_pred chHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCC-CCCh---H----H---HHHHHHhCCcCcEE
Q 044749 155 FGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCE-GFGT---C----G---LAFIASKCRQLRVL 223 (413)
Q Consensus 155 ~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~-~~~~---~----~---l~~~~~~~~~L~~L 223 (413)
+.+.++.+. ....+++++|+++.|+.+...+++....+-+.|.+.+-+ -++. + . +......||+|++.
T Consensus 19 vk~v~eel~-~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v 97 (388)
T COG5238 19 VKGVVEELE-MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKV 97 (388)
T ss_pred hhHHHHHHH-hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceee
Confidence 445555555 478899999999999999999988877654444443211 1221 1 1 11223469999999
Q ss_pred EccccccccccchhhhccCccCCCcceEEecccc
Q 044749 224 DLIETEVTDDEVDWISLFPEGETCLESLIFDCVD 257 (413)
Q Consensus 224 ~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~ 257 (413)
+|+.|.++...++.+..+....+.|++|.+.+|.
T Consensus 98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred eccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 9999998877766677777777788888888773
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.8e-09 Score=97.79 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=36.7
Q ss_pred hcCCCCCEEEeecccCChhhH-----HHHHhcCCCCCEEEeecccccCCCch--hhhhcccccccc
Q 044749 352 PVCANLTSLNFSYATITADQL-----KPVICNCHKLQIFGPSIQYVMKDFRP--WLQRAKNFVNFG 410 (413)
Q Consensus 352 ~~~~~L~~L~Ls~~~it~~~l-----~~l~~~~~~L~~L~l~~c~~i~d~~~--~~~~~~~~~~~~ 410 (413)
..++.|..|+++.|.+.+-.. ......+|+|+.|++..-+ |.|++. .++.++|+.|+.
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhh
Confidence 467888888888877654322 2225678999999997754 444322 245555666554
No 17
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.73 E-value=3.4e-08 Score=99.88 Aligned_cols=165 Identities=17% Similarity=0.197 Sum_probs=105.6
Q ss_pred CCCCcEEeeeCC-ccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 166 YPWLEKVYLKRM-SITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 166 ~~~L~~L~L~~~-~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
-.+|+.|++++. .++......++..+|+|+.|.+.+- .+..+.+..+..++|+|+.||++++.|++-. .++.+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~--GIS~Lk-- 195 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNLS--GISRLK-- 195 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCcH--HHhccc--
Confidence 367888888877 6677777788888888888888876 5655566777778888888888888777631 144444
Q ss_pred CCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHH
Q 044749 245 ETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYI 324 (413)
Q Consensus 245 ~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~ 324 (413)
+|+.|.+.+.. ..+...+..+.. +.+|+.||++...... ...+.
T Consensus 196 --nLq~L~mrnLe-~e~~~~l~~LF~-L~~L~vLDIS~~~~~~--------------------------------~~~ii 239 (699)
T KOG3665|consen 196 --NLQVLSMRNLE-FESYQDLIDLFN-LKKLRVLDISRDKNND--------------------------------DTKII 239 (699)
T ss_pred --cHHHHhccCCC-CCchhhHHHHhc-ccCCCeeecccccccc--------------------------------chHHH
Confidence 77777777665 222334444443 5666666666532111 00000
Q ss_pred HHHhhCCCcccccCCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeeccc
Q 044749 325 AAFAACKSLVCLSGFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQY 391 (413)
Q Consensus 325 ~~~~~~~~L~~L~~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~ 391 (413)
...-.| ...+|+|+.||.|++.++.+.+..++..-|+|+.+.+-+|.
T Consensus 240 ~qYlec--------------------~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~ 286 (699)
T KOG3665|consen 240 EQYLEC--------------------GMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCL 286 (699)
T ss_pred HHHHHh--------------------cccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhh
Confidence 000001 12467888888888888888888888877888877766554
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.71 E-value=5.2e-09 Score=99.36 Aligned_cols=129 Identities=22% Similarity=0.238 Sum_probs=67.8
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
..++|+++++.++.++. +..++....+|+.|+|.+. .++...-.. ....+.|++|||+.|.|+.-. ...|+ .
T Consensus 100 nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N-~I~sv~se~-L~~l~alrslDLSrN~is~i~---~~sfp-~ 171 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHN-LISSVTSEE-LSALPALRSLDLSRNLISEIP---KPSFP-A 171 (873)
T ss_pred cCCcceeeeeccchhhh--cccccccccceeEEeeecc-ccccccHHH-HHhHhhhhhhhhhhchhhccc---CCCCC-C
Confidence 55777777777765432 2223333355777777665 433222111 233566777777777665543 33344 2
Q ss_pred CCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHH-HHHHhcCCCCceeccc
Q 044749 245 ETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQL-YRLMVRAPQLTHLGTG 305 (413)
Q Consensus 245 ~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l-~~ll~~~p~L~~L~l~ 305 (413)
-.++++|+|+++. |+.-....+. ...+|..|+++.+. ++.+ ...++++|+|+.|++.
T Consensus 172 ~~ni~~L~La~N~--It~l~~~~F~-~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 172 KVNIKKLNLASNR--ITTLETGHFD-SLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred CCCceEEeecccc--cccccccccc-ccchheeeecccCc-ccccCHHHhhhcchhhhhhcc
Confidence 2467777777663 3221111111 23466666666642 3333 4455667777777766
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.67 E-value=3.1e-08 Score=107.41 Aligned_cols=129 Identities=12% Similarity=0.098 Sum_probs=79.3
Q ss_pred CCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHH
Q 044749 246 TCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIA 325 (413)
Q Consensus 246 ~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~ 325 (413)
++|+.|+|+++..... +......+++|+.|++++|..+..+...+ .+++|+.|+++++.... .
T Consensus 778 ~sL~~L~Ls~n~~l~~---lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~-------------~ 840 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVE---LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR-------------T 840 (1153)
T ss_pred ccchheeCCCCCCccc---cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc-------------c
Confidence 5778888877641111 11123458999999999986655443322 57889999988432210 0
Q ss_pred HHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeeccc-CChhhHHHHHhcCCCCCEEEeecccccCC
Q 044749 326 AFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYAT-ITADQLKPVICNCHKLQIFGPSIQYVMKD 395 (413)
Q Consensus 326 ~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~-it~~~l~~l~~~~~~L~~L~l~~c~~i~d 395 (413)
......+|+.|. ..+.++ .++.-...+++|+.|+|++|+ +.. +..-+..+++|+.|++.+|..+++
T Consensus 841 ~p~~~~nL~~L~Ls~n~i~--~iP~si~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 841 FPDISTNISDLNLSRTGIE--EVPWWIEKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ccccccccCEeECCCCCCc--cChHHHhcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCccccc
Confidence 111234666666 333443 233333567889999998887 643 333345778888889999987764
No 20
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.66 E-value=2e-09 Score=102.05 Aligned_cols=200 Identities=17% Similarity=0.141 Sum_probs=106.9
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCC--hHHHHHHHHhCCcCcEEEccccccccccchhhhccC
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFG--TCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFP 242 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~--~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~ 242 (413)
.+++|+.|+|.++.|...... -.+.+++|+.|+|... ++. ++| ....|.++++|+|+.|.+..-.-.|+..+.
T Consensus 219 ~L~~L~~LdLnrN~irive~l-tFqgL~Sl~nlklqrN-~I~kL~DG---~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 219 RLPKLESLDLNRNRIRIVEGL-TFQGLPSLQNLKLQRN-DISKLDDG---AFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred hcchhhhhhccccceeeehhh-hhcCchhhhhhhhhhc-CcccccCc---ceeeecccceeecccchhhhhhcccccccc
Confidence 455566666655543321100 1223345555555543 221 111 122466777777777776554434455444
Q ss_pred ccCCCcceEEecccc-CCCCHHHHHHHHHhCCCCcEEEcccccChHHH-HHHHhcCCCCceecccCcCCCcccccCCCCh
Q 044749 243 EGETCLESLIFDCVD-CAINFEALEKLVARSPFLRKLRLNRHVSIRQL-YRLMVRAPQLTHLGTGKYGPSEVAQRQGDTE 320 (413)
Q Consensus 243 ~~~~~L~~L~L~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l-~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~ 320 (413)
.|+.|+|+.+. ..+..++++ .+++|+.|+++++. +..+ ..-+..+.+|++|.++... .+
T Consensus 294 ----~L~~L~lS~NaI~rih~d~Ws----ftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Ns----------i~ 354 (873)
T KOG4194|consen 294 ----SLEQLDLSYNAIQRIHIDSWS----FTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNS----------ID 354 (873)
T ss_pred ----hhhhhccchhhhheeecchhh----hcccceeEeccccc-cccCChhHHHHHHHhhhhcccccc----------hH
Confidence 78888777662 123333332 37888888888752 2222 2334455667777776321 22
Q ss_pred hhHHHHHhhCCCccccc-CCc----ccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeeccc
Q 044749 321 PDYIAAFAACKSLVCLS-GFR----EITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQY 391 (413)
Q Consensus 321 ~~~~~~~~~~~~L~~L~-~~~----~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~ 391 (413)
.--..++..+++|+.|. ..+ .|.| ....+..++.|+.|.|.+|++..-.-+. +..+++||+|+|.+-.
T Consensus 355 ~l~e~af~~lssL~~LdLr~N~ls~~IED--aa~~f~gl~~LrkL~l~gNqlk~I~krA-fsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 355 HLAEGAFVGLSSLHKLDLRSNELSWCIED--AAVAFNGLPSLRKLRLTGNQLKSIPKRA-FSGLEALEHLDLGDNA 427 (873)
T ss_pred HHHhhHHHHhhhhhhhcCcCCeEEEEEec--chhhhccchhhhheeecCceeeecchhh-hccCcccceecCCCCc
Confidence 23334556677777776 221 2333 2233345788888888888754333233 3577888888887644
No 21
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.63 E-value=1.4e-08 Score=65.32 Aligned_cols=37 Identities=35% Similarity=0.648 Sum_probs=32.1
Q ss_pred cCCCCcchHHHHHHHHHhhcCCcchhhHHHHHhHHHHHhhcC
Q 044749 64 QSQYPDQVLEIVLENVLQFLTSRRDRNAASLVCKSWWRAEAL 105 (413)
Q Consensus 64 ~~~LP~e~~~~il~~Ifs~L~~~~d~~~~~~vcr~W~~~~~~ 105 (413)
+..||+| |+.+||+|| +.+|+.++++|||+|+.+...
T Consensus 1 i~~LP~E----il~~If~~L-~~~dl~~~~~vcr~w~~~~~~ 37 (47)
T PF12937_consen 1 ISSLPDE----ILLEIFSYL-DPRDLLRLSLVCRRWRRIAND 37 (47)
T ss_dssp CCCS-HH----HHHHHHTTS--HHHHHHHTTSSHHHHHHHTC
T ss_pred ChHhHHH----HHHHHHhcC-CHHHHHHHHHHHHHHHHHHCC
Confidence 4579999 999999999 699999999999999998754
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.49 E-value=4e-09 Score=100.93 Aligned_cols=219 Identities=16% Similarity=0.117 Sum_probs=112.2
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEcccccccc--ccchhhhccCcc
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTD--DEVDWISLFPEG 244 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~--~~~~~l~~l~~~ 244 (413)
.+|++|+|+++.+....+..+... ..|+.|.+++. .-+-..++.....+.+|+.+|++.|++.. ++ +..+.
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsm-tsL~vLhms~T-qRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPec---ly~l~-- 245 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSM-TSLSVLHMSNT-QRTLDNIPTSLDDLHNLRDVDLSENNLPIVPEC---LYKLR-- 245 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccc-hhhhhhhcccc-cchhhcCCCchhhhhhhhhccccccCCCcchHH---Hhhhh--
Confidence 355566666665555444433322 34555566554 22222333334445566666666665332 22 33333
Q ss_pred CCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHH
Q 044749 245 ETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYI 324 (413)
Q Consensus 245 ~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~ 324 (413)
+|+.|+|+++. ++. +..-...-.+|++|+++.+. ++.+...+..+++|+.|.+.... ...+++.
T Consensus 246 --~LrrLNLS~N~--ite--L~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~Nk---------L~FeGiP 309 (1255)
T KOG0444|consen 246 --NLRRLNLSGNK--ITE--LNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNK---------LTFEGIP 309 (1255)
T ss_pred --hhheeccCcCc--eee--eeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCc---------ccccCCc
Confidence 66666666663 111 00001112345666666532 34455555566666666654211 1233333
Q ss_pred HHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeeccc-CChhhHHHHHhcCCCCCEEEeecccccCC--Cchhh
Q 044749 325 AAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYAT-ITADQLKPVICNCHKLQIFGPSIQYVMKD--FRPWL 400 (413)
Q Consensus 325 ~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~-it~~~l~~l~~~~~~L~~L~l~~c~~i~d--~~~~~ 400 (413)
+-++++.+|+.+. ..+.+ +-++.-...|..|+.|.|+.|. ||-... +.-.+.|+.|++...+++-= .+.-.
T Consensus 310 SGIGKL~~Levf~aanN~L--ElVPEglcRC~kL~kL~L~~NrLiTLPea---IHlL~~l~vLDlreNpnLVMPPKP~da 384 (1255)
T KOG0444|consen 310 SGIGKLIQLEVFHAANNKL--ELVPEGLCRCVKLQKLKLDHNRLITLPEA---IHLLPDLKVLDLRENPNLVMPPKPNDA 384 (1255)
T ss_pred cchhhhhhhHHHHhhcccc--ccCchhhhhhHHHHHhcccccceeechhh---hhhcCCcceeeccCCcCccCCCCcchh
Confidence 3344444555544 11111 0111112468899999999998 765443 34558899999998876531 12223
Q ss_pred hhccccccccccC
Q 044749 401 QRAKNFVNFGFFL 413 (413)
Q Consensus 401 ~~~~~~~~~~~~~ 413 (413)
++.-.++||.|++
T Consensus 385 ~~~lefYNIDFSL 397 (1255)
T KOG0444|consen 385 RKKLEFYNIDFSL 397 (1255)
T ss_pred hhcceeeecceeh
Confidence 4556788888764
No 23
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.49 E-value=4.1e-07 Score=92.15 Aligned_cols=155 Identities=17% Similarity=0.225 Sum_probs=109.9
Q ss_pred CCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCCh
Q 044749 128 RRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGT 207 (413)
Q Consensus 128 ~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~ 207 (413)
.+|++|++.|.. .+...|...++..+|+|++|.+.+..+..+.+..+...+|+|..|+++++ ++++
T Consensus 122 ~nL~~LdI~G~~-------------~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~n 187 (699)
T KOG3665|consen 122 QNLQHLDISGSE-------------LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISN 187 (699)
T ss_pred HhhhhcCccccc-------------hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccC
Confidence 356666666532 23568889999999999999999998877778899999999999999998 7765
Q ss_pred HHHHHHHHhCCcCcEEEcccccccc-ccchhhhccCccCCCcceEEeccccCCCCHHHHHHH---HHhCCCCcEEEcccc
Q 044749 208 CGLAFIASKCRQLRVLDLIETEVTD-DEVDWISLFPEGETCLESLIFDCVDCAINFEALEKL---VARSPFLRKLRLNRH 283 (413)
Q Consensus 208 ~~l~~~~~~~~~L~~L~L~~~~i~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~ 283 (413)
- .-.+++++|++|.+.+-.+.. .. +..+. ..++|+.||++.....-....+... ...+|+|+.||.++.
T Consensus 188 l---~GIS~LknLq~L~mrnLe~e~~~~---l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 188 L---SGISRLKNLQVLSMRNLEFESYQD---LIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred c---HHHhccccHHHHhccCCCCCchhh---HHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 4 235679999999999877664 33 22222 3559999999887422222122222 234599999999976
Q ss_pred -cChHHHHHHHhcCCCCceec
Q 044749 284 -VSIRQLYRLMVRAPQLTHLG 303 (413)
Q Consensus 284 -~~~~~l~~ll~~~p~L~~L~ 303 (413)
.....+..++..-|+|+.+.
T Consensus 261 di~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 261 DINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred chhHHHHHHHHHhCccHhhhh
Confidence 23334566666677777665
No 24
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.20 E-value=5.8e-08 Score=93.21 Aligned_cols=131 Identities=17% Similarity=0.134 Sum_probs=82.7
Q ss_pred CCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHH
Q 044749 246 TCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIA 325 (413)
Q Consensus 246 ~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~ 325 (413)
.+|..++++.+..++-.+.+ ...++|+.|+++++ .++.+..-...+.+|++|+++.. .-..+..
T Consensus 222 ~NL~dvDlS~N~Lp~vPecl----y~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrN-----------QLt~LP~ 285 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLPIVPECL----YKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRN-----------QLTVLPD 285 (1255)
T ss_pred hhhhhccccccCCCcchHHH----hhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccc-----------hhccchH
Confidence 36777777666533333333 23577888888774 23333333445667788887631 2334445
Q ss_pred HHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccC
Q 044749 326 AFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMK 394 (413)
Q Consensus 326 ~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~ 394 (413)
+..+++.|+.|. ..+.++=++++.-..+..+|+.+...+|.+ +.+.+=+.+|++|++|.|.....|+
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L--ElVPEglcRC~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL--ELVPEGLCRCVKLQKLKLDHNRLIT 353 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc--ccCchhhhhhHHHHHhcccccceee
Confidence 556667777777 444566566666556778888888888874 2333446899999999997766655
No 25
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.18 E-value=3.4e-05 Score=67.23 Aligned_cols=198 Identities=18% Similarity=0.180 Sum_probs=131.5
Q ss_pred CCCCcEEEeCCCCCCChHHHHHHHH---hCCcCcEEEccccc---cccccchh---hhccCccCCCcceEEecccc-CCC
Q 044749 191 FSGFKELTLVCCEGFGTCGLAFIAS---KCRQLRVLDLIETE---VTDDEVDW---ISLFPEGETCLESLIFDCVD-CAI 260 (413)
Q Consensus 191 ~~~L~~L~L~~c~~~~~~~l~~~~~---~~~~L~~L~L~~~~---i~~~~~~~---l~~l~~~~~~L~~L~L~~~~-~~~ 260 (413)
...+..++|++. .++..+...+.. +-++|+..+++... ..|+.... +......||.|+..+|+.+. ...
T Consensus 29 ~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 477999999998 787776555543 45677777776643 22332222 22233579999999999883 234
Q ss_pred CHHHHHHHHHhCCCCcEEEccccc--ChH------HHHHH-----HhcCCCCceecccCcCCCcccccCCCChhhHHHHH
Q 044749 261 NFEALEKLVARSPFLRKLRLNRHV--SIR------QLYRL-----MVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAF 327 (413)
Q Consensus 261 ~~~~l~~l~~~~~~L~~L~l~~~~--~~~------~l~~l-----l~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~ 327 (413)
..+.+..+......|++|.+++|. .+. .+..+ ....|.|+....+...-.. .........+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen------gs~~~~a~~l 181 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN------GSKELSAALL 181 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc------CcHHHHHHHH
Confidence 456677788889999999999882 111 12111 2457889999877532221 1234445555
Q ss_pred hhCCCccccc-CCcccChhhHhhHh----hcCCCCCEEEeecccCChhh---HHHHHhcCCCCCEEEeecccccCC
Q 044749 328 AACKSLVCLS-GFREITPDYLSAIY----PVCANLTSLNFSYATITADQ---LKPVICNCHKLQIFGPSIQYVMKD 395 (413)
Q Consensus 328 ~~~~~L~~L~-~~~~i~~~~l~~l~----~~~~~L~~L~Ls~~~it~~~---l~~l~~~~~~L~~L~l~~c~~i~d 395 (413)
+...+|+.+. ..+.|.++++..++ ..|.+|+.|||.+|.+|..+ +...+...+.|+.|.+..|-.-+.
T Consensus 182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence 6667888887 45567777665543 45799999999999987765 344456678899999999975443
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.16 E-value=2.2e-05 Score=80.38 Aligned_cols=72 Identities=18% Similarity=0.114 Sum_probs=39.1
Q ss_pred CCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccC
Q 044749 166 YPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGE 245 (413)
Q Consensus 166 ~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~ 245 (413)
.++|+.|++++|.++.- ....++|+.|+|+++ .+. .+. ....+|+.|++++|.++. ++...
T Consensus 241 p~~Lk~LdLs~N~LtsL-----P~lp~sL~~L~Ls~N-~L~--~Lp---~lp~~L~~L~Ls~N~Lt~--------LP~~p 301 (788)
T PRK15387 241 PPELRTLEVSGNQLTSL-----PVLPPGLLELSIFSN-PLT--HLP---ALPSGLCKLWIFGNQLTS--------LPVLP 301 (788)
T ss_pred CCCCcEEEecCCccCcc-----cCcccccceeeccCC-chh--hhh---hchhhcCEEECcCCcccc--------ccccc
Confidence 36788888887765521 122356777777766 332 122 123456666666665442 12222
Q ss_pred CCcceEEeccc
Q 044749 246 TCLESLIFDCV 256 (413)
Q Consensus 246 ~~L~~L~L~~~ 256 (413)
++|+.|+++++
T Consensus 302 ~~L~~LdLS~N 312 (788)
T PRK15387 302 PGLQELSVSDN 312 (788)
T ss_pred cccceeECCCC
Confidence 46666666665
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.14 E-value=1.2e-06 Score=73.17 Aligned_cols=127 Identities=18% Similarity=0.198 Sum_probs=34.4
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGET 246 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~ 246 (413)
..+++|+|.++.|+. +..+...+.+|+.|+|++| .+..- .. ...++.|++|++++|.|++-.. .+ ...++
T Consensus 19 ~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N-~I~~l--~~-l~~L~~L~~L~L~~N~I~~i~~-~l---~~~lp 88 (175)
T PF14580_consen 19 VKLRELNLRGNQIST--IENLGATLDKLEVLDLSNN-QITKL--EG-LPGLPRLKTLDLSNNRISSISE-GL---DKNLP 88 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--SS---S-CH-HH---HHH-T
T ss_pred ccccccccccccccc--ccchhhhhcCCCEEECCCC-CCccc--cC-ccChhhhhhcccCCCCCCcccc-ch---HHhCC
Confidence 345666666665553 2334434456666766666 43321 11 2235666677776666654220 01 11234
Q ss_pred CcceEEeccccCCCCHHHHHHHHHhCCCCcEEEccccc--ChHH-HHHHHhcCCCCceeccc
Q 044749 247 CLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHV--SIRQ-LYRLMVRAPQLTHLGTG 305 (413)
Q Consensus 247 ~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~~~-l~~ll~~~p~L~~L~l~ 305 (413)
+|++|+++++.- .+...+..+. .+|+|+.|++.++. .... -..++..+|+|+.||-.
T Consensus 89 ~L~~L~L~~N~I-~~l~~l~~L~-~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 89 NLQELYLSNNKI-SDLNELEPLS-SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp T--EEE-TTS----SCCCCGGGG-G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCEEECcCCcC-CChHHhHHHH-cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 666666666530 0011122232 36666666666541 1112 23444557777777643
No 28
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.12 E-value=2.4e-06 Score=52.99 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=31.0
Q ss_pred CCcchHHHHHHHHHhhcCCcchhhHHHHHhHHHHHhhcC
Q 044749 67 YPDQVLEIVLENVLQFLTSRRDRNAASLVCKSWWRAEAL 105 (413)
Q Consensus 67 LP~e~~~~il~~Ifs~L~~~~d~~~~~~vcr~W~~~~~~ 105 (413)
||+| ++.+||.+| +..|+.+++.|||+|+.+...
T Consensus 1 lP~~----ll~~I~~~l-~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDE----ILEEILSKL-PPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHH----HHHHHHHcC-CHHHHHHHHHHHHHHHHHhcC
Confidence 6899 999999999 599999999999999998654
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.11 E-value=3.9e-06 Score=70.06 Aligned_cols=111 Identities=16% Similarity=0.080 Sum_probs=51.1
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+.+|+.|+|+++.++.- ..+. .+++|+.|.+++. .++..+ ..+...||+|++|.+++|.|.+-. .+..+. .
T Consensus 40 ~l~~L~~L~Ls~N~I~~l--~~l~-~L~~L~~L~L~~N-~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~--~l~~L~-~ 111 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKL--EGLP-GLPRLKTLDLSNN-RISSIS-EGLDKNLPNLQELYLSNNKISDLN--ELEPLS-S 111 (175)
T ss_dssp T-TT--EEE-TTS--S----TT-----TT--EEE--SS----S-C-HHHHHH-TT--EEE-TTS---SCC--CCGGGG-G
T ss_pred hhcCCCEEECCCCCCccc--cCcc-ChhhhhhcccCCC-CCCccc-cchHHhCCcCCEEECcCCcCCChH--HhHHHH-c
Confidence 568999999999977642 2222 3588999999987 665432 123456999999999999988732 133332 4
Q ss_pred CCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccc
Q 044749 245 ETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRH 283 (413)
Q Consensus 245 ~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 283 (413)
+++|+.|+|.++...-....-..+...+|+|+.||-...
T Consensus 112 l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 112 LPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 669999999998522222333446667899999987653
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.10 E-value=1.7e-06 Score=88.22 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=27.9
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccc
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVT 231 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~ 231 (413)
++|+.|+++++.++. +.....+|+.|.|+++ .++. +. ...++|+.|+|++|.+.
T Consensus 262 ~sL~~L~Ls~N~L~~-----Lp~lp~~L~~L~Ls~N-~Lt~--LP---~~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 262 PGLLELSIFSNPLTH-----LPALPSGLCKLWIFGN-QLTS--LP---VLPPGLQELSVSDNQLA 315 (788)
T ss_pred cccceeeccCCchhh-----hhhchhhcCEEECcCC-cccc--cc---ccccccceeECCCCccc
Confidence 566667776665442 1222245666666665 3332 11 12355666666666544
No 31
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.02 E-value=1.2e-06 Score=56.62 Aligned_cols=37 Identities=32% Similarity=0.552 Sum_probs=30.6
Q ss_pred cCCCCcchHHHHHHHHHhhcCCcchhhHHHHHhHHHHHhhcC
Q 044749 64 QSQYPDQVLEIVLENVLQFLTSRRDRNAASLVCKSWWRAEAL 105 (413)
Q Consensus 64 ~~~LP~e~~~~il~~Ifs~L~~~~d~~~~~~vcr~W~~~~~~ 105 (413)
+..||+| ++.+||+|| +..|+.+++.|||+|+++...
T Consensus 3 ~~~LP~~----il~~Il~~l-~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDE----ILQEILSYL-DPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HH----HHHHHHHTS--HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHH----HHHHHHHHC-cHHHHHHHHHHhhHHHHHHcC
Confidence 3569999 999999999 599999999999999998654
No 32
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.97 E-value=1.4e-06 Score=87.40 Aligned_cols=203 Identities=13% Similarity=0.136 Sum_probs=105.1
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccC--
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFP-- 242 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~-- 242 (413)
.|.+|+.++..++.++. ....+... .+|+.|.+..| .+ ..+.......+.|++|+|..|.+.+-....+....
T Consensus 262 ~~~nle~l~~n~N~l~~-lp~ri~~~-~~L~~l~~~~n-el--~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~ 336 (1081)
T KOG0618|consen 262 ACANLEALNANHNRLVA-LPLRISRI-TSLVSLSAAYN-EL--EYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNAS 336 (1081)
T ss_pred hcccceEecccchhHHh-hHHHHhhh-hhHHHHHhhhh-hh--hhCCCcccccceeeeeeehhccccccchHHHhhhhHH
Confidence 45666666666665421 11122221 23444444433 11 01111123356778888887765543211111100
Q ss_pred -------------------ccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHH-HHHHhcCCCCcee
Q 044749 243 -------------------EGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQL-YRLMVRAPQLTHL 302 (413)
Q Consensus 243 -------------------~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l-~~ll~~~p~L~~L 302 (413)
...+.|+.|.+.++. .++..+..+. ..++||.|+++++. +..+ ...+..++.|++|
T Consensus 337 l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~--Ltd~c~p~l~-~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL 412 (1081)
T KOG0618|consen 337 LNTLNVSSNKLSTLPSYEENNHAALQELYLANNH--LTDSCFPVLV-NFKHLKVLHLSYNR-LNSFPASKLRKLEELEEL 412 (1081)
T ss_pred HHHHhhhhccccccccccchhhHHHHHHHHhcCc--ccccchhhhc-cccceeeeeecccc-cccCCHHHHhchHHhHHH
Confidence 123356666666554 5555555443 47888888888852 2222 3445667888888
Q ss_pred cccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCC
Q 044749 303 GTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHK 381 (413)
Q Consensus 303 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~ 381 (413)
.+++.. -..+......|+.|++|. ..+.+. .++.+ ...+.|+.+|++.|+++.-.+...+ -.|+
T Consensus 413 ~LSGNk-----------L~~Lp~tva~~~~L~tL~ahsN~l~--~fPe~-~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~ 477 (1081)
T KOG0618|consen 413 NLSGNK-----------LTTLPDTVANLGRLHTLRAHSNQLL--SFPEL-AQLPQLKVLDLSCNNLSEVTLPEAL-PSPN 477 (1081)
T ss_pred hcccch-----------hhhhhHHHHhhhhhHHHhhcCCcee--echhh-hhcCcceEEecccchhhhhhhhhhC-CCcc
Confidence 887422 223334455666677776 221221 22322 3457788888887777655544433 2367
Q ss_pred CCEEEeeccc
Q 044749 382 LQIFGPSIQY 391 (413)
Q Consensus 382 L~~L~l~~c~ 391 (413)
|+.|++.|-.
T Consensus 478 LkyLdlSGN~ 487 (1081)
T KOG0618|consen 478 LKYLDLSGNT 487 (1081)
T ss_pred cceeeccCCc
Confidence 8888887754
No 33
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=1.1e-05 Score=67.30 Aligned_cols=85 Identities=24% Similarity=0.247 Sum_probs=66.2
Q ss_pred CCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccc-cccccchhhhccCccCC
Q 044749 168 WLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETE-VTDDEVDWISLFPEGET 246 (413)
Q Consensus 168 ~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~l~~~~~ 246 (413)
.++.++-+++.|..+++..+... +.++.|.+.+|.++.+.++..+..-.++|+.|+|++|. |++.+..++..++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l-~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk---- 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDL-RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK---- 176 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhcc-chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh----
Confidence 35677778888888888887765 88999999999888888888887777888888888876 8887766666665
Q ss_pred CcceEEecccc
Q 044749 247 CLESLIFDCVD 257 (413)
Q Consensus 247 ~L~~L~L~~~~ 257 (413)
+|+.|.|.+..
T Consensus 177 nLr~L~l~~l~ 187 (221)
T KOG3864|consen 177 NLRRLHLYDLP 187 (221)
T ss_pred hhHHHHhcCch
Confidence 77777766654
No 34
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=2.5e-05 Score=68.89 Aligned_cols=108 Identities=20% Similarity=0.249 Sum_probs=70.2
Q ss_pred CcEEeeeCCccCH-HHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCC
Q 044749 169 LEKVYLKRMSITD-DDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETC 247 (413)
Q Consensus 169 L~~L~L~~~~l~~-~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~ 247 (413)
++-|.+.++.|.. .+...++..+..+++|+|.+..--....+.++..++|.|+.|+|+.|.+... +..++....+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~----I~~lp~p~~n 122 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD----IKSLPLPLKN 122 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc----cccCcccccc
Confidence 3445566665543 3455667777778888888763233456777888888888888888776543 3444444558
Q ss_pred cceEEeccccCCCCHHHHHHHHHhCCCCcEEEccc
Q 044749 248 LESLIFDCVDCAINFEALEKLVARSPFLRKLRLNR 282 (413)
Q Consensus 248 L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 282 (413)
|+.|.|.|.. .+......+....|.++.|+++.
T Consensus 123 l~~lVLNgT~--L~w~~~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 123 LRVLVLNGTG--LSWTQSTSSLDDLPKVTELHMSD 155 (418)
T ss_pred eEEEEEcCCC--CChhhhhhhhhcchhhhhhhhcc
Confidence 8888887775 55555555666667777776665
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.73 E-value=1.7e-05 Score=70.06 Aligned_cols=208 Identities=17% Similarity=0.139 Sum_probs=117.9
Q ss_pred HHHhhCCCCcEEeeeCC--ccC-----HHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccc
Q 044749 161 VLANAYPWLEKVYLKRM--SIT-----DDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDD 233 (413)
Q Consensus 161 ~l~~~~~~L~~L~L~~~--~l~-----~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~ 233 (413)
.+...|..|+.|..+.. .+. ..-+..-...|.+|+.+.++.|+.- .+..+...-|.|.++.+.+..+.+.
T Consensus 176 hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~---~i~~~~~~kptl~t~~v~~s~~~~~ 252 (490)
T KOG1259|consen 176 HVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE---NIVDIELLKPTLQTICVHNTTIQDV 252 (490)
T ss_pred HHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh---heeceeecCchhheeeeeccccccc
Confidence 33445677777777654 122 1112222334577888888877432 2333333456777777665443332
Q ss_pred cc-------------------hhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHh
Q 044749 234 EV-------------------DWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMV 294 (413)
Q Consensus 234 ~~-------------------~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~ 294 (413)
.. ..+....+....|++|+|+++. |+ .+..-.+-.|.++.|+++++. +..+.. +.
T Consensus 253 ~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~--I~--~iDESvKL~Pkir~L~lS~N~-i~~v~n-La 326 (490)
T KOG1259|consen 253 PSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNL--IT--QIDESVKLAPKLRRLILSQNR-IRTVQN-LA 326 (490)
T ss_pred ccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccc--hh--hhhhhhhhccceeEEeccccc-eeeehh-hh
Confidence 10 0011122345689999999885 22 222233456999999999853 222223 67
Q ss_pred cCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHH
Q 044749 295 RAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLK 373 (413)
Q Consensus 295 ~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~ 373 (413)
.+++|++|+++. + .-..+...-..+.|+++|. .-+.+. .+..+ .+.-+|..||+++|+|..-.-.
T Consensus 327 ~L~~L~~LDLS~-N----------~Ls~~~Gwh~KLGNIKtL~La~N~iE--~LSGL-~KLYSLvnLDl~~N~Ie~ldeV 392 (490)
T KOG1259|consen 327 ELPQLQLLDLSG-N----------LLAECVGWHLKLGNIKTLKLAQNKIE--TLSGL-RKLYSLVNLDLSSNQIEELDEV 392 (490)
T ss_pred hcccceEeeccc-c----------hhHhhhhhHhhhcCEeeeehhhhhHh--hhhhh-HhhhhheeccccccchhhHHHh
Confidence 789999999983 2 1222222333466777766 211221 12222 2345789999999997443333
Q ss_pred HHHhcCCCCCEEEeeccc
Q 044749 374 PVICNCHKLQIFGPSIQY 391 (413)
Q Consensus 374 ~l~~~~~~L~~L~l~~c~ 391 (413)
.-+++.|.|+++.+.+.+
T Consensus 393 ~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 393 NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred cccccccHHHHHhhcCCC
Confidence 336889999999988865
No 36
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=2.7e-05 Score=68.70 Aligned_cols=138 Identities=14% Similarity=0.139 Sum_probs=65.6
Q ss_pred HHHHhhCCCCcEEeeeCCccCH-HHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhh
Q 044749 160 CVLANAYPWLEKVYLKRMSITD-DDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWI 238 (413)
Q Consensus 160 ~~l~~~~~~L~~L~L~~~~l~~-~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 238 (413)
..+...+..+++++|.++.+++ ..+..+.+.+|.|+.|+|+.. .+.. .|..+-.-..+|++|-|.+..+.-.. +
T Consensus 64 ~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s-~I~~lp~p~~nl~~lVLNgT~L~w~~---~ 138 (418)
T KOG2982|consen 64 MLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSS-DIKSLPLPLKNLRVLVLNGTGLSWTQ---S 138 (418)
T ss_pred HHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCC-ccccCcccccceEEEEEcCCCCChhh---h
Confidence 3444455666666666665543 445556666666666666543 3222 11111112345666666665554443 3
Q ss_pred hccCccCCCcceEEeccc---cCCCCHHHHHHHHHhCCCCcEEEcccccC--hHHHHHHHhcCCCCceeccc
Q 044749 239 SLFPEGETCLESLIFDCV---DCAINFEALEKLVARSPFLRKLRLNRHVS--IRQLYRLMVRAPQLTHLGTG 305 (413)
Q Consensus 239 ~~l~~~~~~L~~L~L~~~---~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~l~~ll~~~p~L~~L~l~ 305 (413)
..+.+..|.+++|+++.+ ...++++..+. ..+.+++|....|.. -.....+.+.+|++..+-+.
T Consensus 139 ~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~ 207 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVC 207 (418)
T ss_pred hhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeee
Confidence 334444445666655544 11222222221 234555555555521 11223344456666655543
No 37
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.69 E-value=8.8e-06 Score=74.57 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=32.6
Q ss_pred hcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccc
Q 044749 352 PVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYV 392 (413)
Q Consensus 352 ~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~ 392 (413)
..+.+|+.|||..|.+ ..+...+++|.+|++|+|+|-+.
T Consensus 502 ~nm~nL~tLDL~nNdl--q~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNNDL--QQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhhhcceeccCCCch--hhCChhhccccceeEEEecCCcc
Confidence 4678999999998875 45677889999999999999653
No 38
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.46 E-value=0.00023 Score=73.21 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=19.5
Q ss_pred CCCCEEEeecccCChhhHHHHHhcCCCCCEEEeeccc
Q 044749 355 ANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQY 391 (413)
Q Consensus 355 ~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~ 391 (413)
++|+.|+|++|.++. +..-+ .++|+.|+|.+|.
T Consensus 346 ~sL~~L~Ls~N~L~~--LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 346 PELQVLDVSKNQITV--LPETL--PPTITTLDVSRNA 378 (754)
T ss_pred CcccEEECCCCCCCc--CChhh--cCCcCEEECCCCc
Confidence 577777777777542 11111 2567777777764
No 39
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.43 E-value=1.2e-05 Score=81.02 Aligned_cols=128 Identities=20% Similarity=0.188 Sum_probs=77.4
Q ss_pred CCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCC-CCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhc
Q 044749 217 CRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCA-INFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVR 295 (413)
Q Consensus 217 ~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~ 295 (413)
.+.|+.|.+.+|.++|..+..+..+. +|+.|+|+.+.-. +.+..+ ...+.|+.|.++++ .+..+..-+..
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~----hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGN-kL~~Lp~tva~ 428 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFK----HLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGN-KLTTLPDTVAN 428 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhcccc----ceeeeeecccccccCCHHHH----hchHHhHHHhcccc-hhhhhhHHHHh
Confidence 34566677777777777755555544 7777777776311 222222 23566777777763 34555555666
Q ss_pred CCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeeccc
Q 044749 296 APQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYAT 366 (413)
Q Consensus 296 ~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~ 366 (413)
+++|+.|...+.... ... -+..++.|+.+. +|+.++...++...+. ++|++|||++|.
T Consensus 429 ~~~L~tL~ahsN~l~--------~fP----e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLL--------SFP----ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhhhHHHhhcCCcee--------ech----hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 777777764421111 111 223466777777 7777776666666443 899999999887
No 40
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.34 E-value=4.4e-05 Score=74.32 Aligned_cols=68 Identities=26% Similarity=0.356 Sum_probs=34.2
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCC----CcEEEeCCCCCCChHHHHH---HHHhCCcCcEEEccccccccc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSG----FKELTLVCCEGFGTCGLAF---IASKCRQLRVLDLIETEVTDD 233 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~----L~~L~L~~c~~~~~~~l~~---~~~~~~~L~~L~L~~~~i~~~ 233 (413)
..+.|++|+++++.+++.+...+...++. |+.|.+..| .++..+... ....+..|+.+++..|.+.+.
T Consensus 113 t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~ 187 (478)
T KOG4308|consen 113 TLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLNGLIEL 187 (478)
T ss_pred ccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhcccchh
Confidence 34555666666666656665555554432 445555555 444443222 222345555555555554433
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.27 E-value=0.00031 Score=73.53 Aligned_cols=220 Identities=18% Similarity=0.129 Sum_probs=107.1
Q ss_pred hCCCCcEEeeeCCcc-CHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCc
Q 044749 165 AYPWLEKVYLKRMSI-TDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPE 243 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l-~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~ 243 (413)
.+++|++|-+.++.. -......+....|.|++|+|++|...+ .++...+.+-+||.|+|+++.|.. .+..+..+.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk- 618 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLK- 618 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCCccc-cchHHHHHH-
Confidence 456677776665521 111111223445778888888764433 234445556778888888777652 112244444
Q ss_pred cCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEccccc-ChH-HHHHHHhcCCCCceecccCcCCCcccccCCCChh
Q 044749 244 GETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHV-SIR-QLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEP 321 (413)
Q Consensus 244 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~-~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~ 321 (413)
.|.+|++..+...-. +..+....++|+.|.+.... ..+ ....-+....+|+.|.+... ..
T Consensus 619 ---~L~~Lnl~~~~~l~~---~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~------------s~ 680 (889)
T KOG4658|consen 619 ---KLIYLNLEVTGRLES---IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS------------SV 680 (889)
T ss_pred ---hhheecccccccccc---ccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc------------hh
Confidence 777777766531111 12233446788888876542 111 11122233444444443210 11
Q ss_pred hHHHHHhhCCCccccc-CCc--ccChhhHhhHhhcCCCCCEEEeecccCChhh---------------HHHH--------
Q 044749 322 DYIAAFAACKSLVCLS-GFR--EITPDYLSAIYPVCANLTSLNFSYATITADQ---------------LKPV-------- 375 (413)
Q Consensus 322 ~~~~~~~~~~~L~~L~-~~~--~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~---------------l~~l-------- 375 (413)
.+..-+.....|.++. +.. ...............+|+.|.+.+|.+.+.. +..+
T Consensus 681 ~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 760 (889)
T KOG4658|consen 681 LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML 760 (889)
T ss_pred HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc
Confidence 1111111222222221 000 0011112222244578888888887754321 1111
Q ss_pred -----HhcCCCCCEEEeecccccCCCchhhhhcccc
Q 044749 376 -----ICNCHKLQIFGPSIQYVMKDFRPWLQRAKNF 406 (413)
Q Consensus 376 -----~~~~~~L~~L~l~~c~~i~d~~~~~~~~~~~ 406 (413)
..--|+|++|.+.+|..+.|.-+...++...
T Consensus 761 r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l 796 (889)
T KOG4658|consen 761 RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL 796 (889)
T ss_pred cccchhhccCcccEEEEecccccccCCCHHHHhhhc
Confidence 0123688889999998888877776665433
No 42
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.00025 Score=59.30 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=53.4
Q ss_pred HhhCCCccccc--CCcccChhhHhhHhhcCCCCCEEEeeccc-CChhhHHHHHhcCCCCCEEEeecccccCCC
Q 044749 327 FAACKSLVCLS--GFREITPDYLSAIYPVCANLTSLNFSYAT-ITADQLKPVICNCHKLQIFGPSIQYVMKDF 396 (413)
Q Consensus 327 ~~~~~~L~~L~--~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~-it~~~l~~l~~~~~~L~~L~l~~c~~i~d~ 396 (413)
+..++.++.|+ .|..+.|.++..+....++|+.|+|++|. ||+.++.-+ ..+++|+.|.|.+=+.+.+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL-LKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH-HHhhhhHHHHhcCchhhhch
Confidence 34455666666 77788888899888888899999999888 998888765 47888988888776655543
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.08 E-value=3.4e-05 Score=75.96 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=33.2
Q ss_pred hcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCCCchhhhh
Q 044749 352 PVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKDFRPWLQR 402 (413)
Q Consensus 352 ~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~~~~~~ 402 (413)
.+.++|..||++||-+.+-.-..++.....|..|+|.|.+. -+.+|.|-
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl--~c~p~hRa 299 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL--CCAPWHRA 299 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc--ccCHHHHH
Confidence 45688889999998866555455566666788888888553 23455443
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.07 E-value=0.00026 Score=62.75 Aligned_cols=124 Identities=20% Similarity=0.172 Sum_probs=79.5
Q ss_pred CCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccC
Q 044749 166 YPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGE 245 (413)
Q Consensus 166 ~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~ 245 (413)
...|+++||+++.|+. +..-.+..|.++.|+++.. ++...+ . ..++++|+.|||++|.++.-. .|=..+.
T Consensus 283 Wq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N-~i~~v~--n-La~L~~L~~LDLS~N~Ls~~~-Gwh~KLG--- 352 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQN-RIRTVQ--N-LAELPQLQLLDLSGNLLAECV-GWHLKLG--- 352 (490)
T ss_pred Hhhhhhccccccchhh--hhhhhhhccceeEEecccc-ceeeeh--h-hhhcccceEeecccchhHhhh-hhHhhhc---
Confidence 3457888999886653 2222345688999999987 544322 2 445889999999998765421 1333344
Q ss_pred CCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHH--HHhcCCCCceecccC
Q 044749 246 TCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYR--LMVRAPQLTHLGTGK 306 (413)
Q Consensus 246 ~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~--ll~~~p~L~~L~l~~ 306 (413)
+++.|.|.++. .+.+.-+.+ .-+|..|++.++ .+..+.. -+..+|.|+++.+..
T Consensus 353 -NIKtL~La~N~----iE~LSGL~K-LYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 353 -NIKTLKLAQNK----IETLSGLRK-LYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred -CEeeeehhhhh----HhhhhhhHh-hhhheecccccc-chhhHHHhcccccccHHHHHhhcC
Confidence 88889888875 233433443 567888888874 3444432 345688888888763
No 45
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.87 E-value=0.00061 Score=66.45 Aligned_cols=214 Identities=17% Similarity=0.170 Sum_probs=121.6
Q ss_pred CcEEeeeCCccCHHHHHHHHHhCC---CCcEEEeCCCCCCChHHHHHHHHhCC----cCcEEEccccccccccchhhhcc
Q 044749 169 LEKVYLKRMSITDDDLALLAESFS---GFKELTLVCCEGFGTCGLAFIASKCR----QLRVLDLIETEVTDDEVDWISLF 241 (413)
Q Consensus 169 L~~L~L~~~~l~~~~l~~l~~~~~---~L~~L~L~~c~~~~~~~l~~~~~~~~----~L~~L~L~~~~i~~~~~~~l~~l 241 (413)
+..|.|.+|.+.+.+...++..++ +|+.|+++++ ++++.+...+....+ .|+.|++..|.+++++...+...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 666777777777777777766654 4788888887 777777666655443 35677777788777765544443
Q ss_pred CccCCCcceEEeccccCCCCHHHHHHHHH-------hCCCCcEEEccccc-ChH---HHHHHHhcCCC-CceecccCcCC
Q 044749 242 PEGETCLESLIFDCVDCAINFEALEKLVA-------RSPFLRKLRLNRHV-SIR---QLYRLMVRAPQ-LTHLGTGKYGP 309 (413)
Q Consensus 242 ~~~~~~L~~L~L~~~~~~~~~~~l~~l~~-------~~~~L~~L~l~~~~-~~~---~l~~ll~~~p~-L~~L~l~~~~~ 309 (413)
...+..++.+++..+. +...+...+.. ...++++|++.+|. ... .+...+...+. +..|++.....
T Consensus 168 L~~~~~l~~l~l~~n~--l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNG--LIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HhcccchhHHHHHhcc--cchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 3347778888887774 22333222221 23567778888773 211 23444445555 66677663332
Q ss_pred CcccccCCCChhhHHHHHhhC-CCccccc-CCcccChhh---HhhHhhcCCCCCEEEeecccCChhhHHHHHh---cCCC
Q 044749 310 SEVAQRQGDTEPDYIAAFAAC-KSLVCLS-GFREITPDY---LSAIYPVCANLTSLNFSYATITADQLKPVIC---NCHK 381 (413)
Q Consensus 310 ~~~~~~~g~~~~~~~~~~~~~-~~L~~L~-~~~~i~~~~---l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~---~~~~ 381 (413)
++ .....+...+... ..++.+. ....+++.+ +......|++++.|.++++.+++.+...++. ....
T Consensus 246 ~d------~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~ 319 (478)
T KOG4308|consen 246 GD------VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTP 319 (478)
T ss_pred ch------HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhccc
Confidence 21 0111222222223 3445555 222444443 3344455678888888888877776555543 3345
Q ss_pred CCEEEeeccc
Q 044749 382 LQIFGPSIQY 391 (413)
Q Consensus 382 L~~L~l~~c~ 391 (413)
+.++.+.++.
T Consensus 320 ~~~~~l~~~~ 329 (478)
T KOG4308|consen 320 LLHLVLGGTG 329 (478)
T ss_pred chhhhccccC
Confidence 5566665544
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.82 E-value=0.0014 Score=41.10 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=30.5
Q ss_pred CCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCCCc
Q 044749 355 ANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKDFR 397 (413)
Q Consensus 355 ~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~ 397 (413)
++|++|++++|.|++ +...+.++++|+.|++++++ +++++
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC-CCCCc
Confidence 579999999999874 44546899999999999984 56654
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.80 E-value=0.00072 Score=70.87 Aligned_cols=111 Identities=17% Similarity=0.102 Sum_probs=63.9
Q ss_pred HhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccC
Q 044749 163 ANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFP 242 (413)
Q Consensus 163 ~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~ 242 (413)
....|.|+.|||++|.-...-...++. +-+|++|+|+++ ++. .++.-..+++.|.+|++..+.........+..+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t-~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L- 641 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDT-GIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL- 641 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCC-Ccc--ccchHHHHHHhhheeccccccccccccchhhhc-
Confidence 346799999999976221111122333 367999999987 554 444455667888999988765221111112223
Q ss_pred ccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEccc
Q 044749 243 EGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNR 282 (413)
Q Consensus 243 ~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 282 (413)
++|+.|.+.......+...+..+ ....+|+.|.+..
T Consensus 642 ---~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 642 ---QSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSITI 677 (889)
T ss_pred ---ccccEEEeeccccccchhhHHhh-hcccchhhheeec
Confidence 48888888766423333334433 2355555555543
No 48
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.0004 Score=60.96 Aligned_cols=105 Identities=22% Similarity=0.312 Sum_probs=59.9
Q ss_pred CCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEcccccccc-ccchhhhccCcc
Q 044749 166 YPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTD-DEVDWISLFPEG 244 (413)
Q Consensus 166 ~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~-~~~~~l~~l~~~ 244 (413)
+.+.++|++-+|.++|-. +....+.|++|.|+-+ .++. +.. ...|++|++|.|..|.|.+ +...|+..++
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvN-kIss--L~p-l~rCtrLkElYLRkN~I~sldEL~YLknlp-- 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVN-KISS--LAP-LQRCTRLKELYLRKNCIESLDELEYLKNLP-- 88 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeecc-cccc--chh-HHHHHHHHHHHHHhcccccHHHHHHHhcCc--
Confidence 345667777777777653 3445577777777755 3332 222 3457778887777777665 3334444444
Q ss_pred CCCcceEEeccccCC--CCHHHHHHHHHhCCCCcEEEcc
Q 044749 245 ETCLESLIFDCVDCA--INFEALEKLVARSPFLRKLRLN 281 (413)
Q Consensus 245 ~~~L~~L~L~~~~~~--~~~~~l~~l~~~~~~L~~L~l~ 281 (413)
+|+.|.|..+.+. .+...=......+|+|++||=-
T Consensus 89 --sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 89 --SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred --hhhhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 7777777654321 1222222334446777777643
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.74 E-value=0.00051 Score=46.67 Aligned_cols=59 Identities=20% Similarity=0.089 Sum_probs=33.4
Q ss_pred CCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccc
Q 044749 192 SGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCV 256 (413)
Q Consensus 192 ~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~ 256 (413)
|+|++|.+++| .+.... .....++++|++|++++|.+..-....+. ++++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~-~~~f~~l~~L~~L~l~~N~l~~i~~~~f~----~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIP-PDSFSNLPNLETLDLSNNNLTSIPPDAFS----NLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEEC-TTTTTTGTTESEEEETSSSESEEETTTTT----TSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccC-HHHHcCCCCCCEeEccCCccCccCHHHHc----CCCCCCEEeCcCC
Confidence 45666777666 443221 11234577777888777776543322233 3447777777765
No 50
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.00064 Score=59.73 Aligned_cols=100 Identities=24% Similarity=0.311 Sum_probs=71.2
Q ss_pred CCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHh
Q 044749 192 SGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVAR 271 (413)
Q Consensus 192 ~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~ 271 (413)
.+.+.|+.-+| ++++.. +...++.|++|.|+-|.|+. +..+. .|++|++|.|+.+. --+...++.+. +
T Consensus 19 ~~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSvNkIss-----L~pl~-rCtrLkElYLRkN~-I~sldEL~YLk-n 86 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSVNKISS-----LAPLQ-RCTRLKELYLRKNC-IESLDELEYLK-N 86 (388)
T ss_pred HHhhhhcccCC-CccHHH---HHHhcccceeEEeecccccc-----chhHH-HHHHHHHHHHHhcc-cccHHHHHHHh-c
Confidence 46788888888 777754 45668999999999888765 33343 68899999998764 23344566555 5
Q ss_pred CCCCcEEEcccc--cC-hH--HHHHHHhcCCCCceec
Q 044749 272 SPFLRKLRLNRH--VS-IR--QLYRLMVRAPQLTHLG 303 (413)
Q Consensus 272 ~~~L~~L~l~~~--~~-~~--~l~~ll~~~p~L~~L~ 303 (413)
.|+|+.|.|..+ .. .+ --..++..+|+|+.|+
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 899999988764 21 11 2356677899999997
No 51
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.56 E-value=0.0059 Score=63.08 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=32.7
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccc
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVT 231 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~ 231 (413)
++|+.|+|++|.+..- ... ...+|+.|+++++ .++. +.. .-+++|+.|++++|.++
T Consensus 241 ~~L~~L~Ls~N~L~~L-P~~---l~s~L~~L~Ls~N-~L~~--LP~--~l~~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 241 DTIQEMELSINRITEL-PER---LPSALQSLDLFHN-KISC--LPE--NLPEELRYLSVYDNSIR 296 (754)
T ss_pred ccccEEECcCCccCcC-Chh---HhCCCCEEECcCC-ccCc--ccc--ccCCCCcEEECCCCccc
Confidence 4678888888765421 001 1246888888765 5542 211 11357888888877655
No 52
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.52 E-value=0.0024 Score=34.89 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=17.0
Q ss_pred CCCCCEEEeeccc-CChhhHHHHH
Q 044749 354 CANLTSLNFSYAT-ITADQLKPVI 376 (413)
Q Consensus 354 ~~~L~~L~Ls~~~-it~~~l~~l~ 376 (413)
|++|++|+|++|. |||.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 5677777887777 7777777664
No 53
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.51 E-value=0.00069 Score=62.36 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=53.0
Q ss_pred CCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccc-cccccccchhhhccCccCC
Q 044749 168 WLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIE-TEVTDDEVDWISLFPEGET 246 (413)
Q Consensus 168 ~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~-~~i~~~~~~~l~~l~~~~~ 246 (413)
.-.+++|..+.|+.-.-.++ ..+++|++|+|+.. .+...+-.+ ...+++|.+|-+.+ |.|++-.-..+..+.
T Consensus 68 ~tveirLdqN~I~~iP~~aF-~~l~~LRrLdLS~N-~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~---- 140 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAF-KTLHRLRRLDLSKN-NISFIAPDA-FKGLASLLSLVLYGNNKITDLPKGAFGGLS---- 140 (498)
T ss_pred cceEEEeccCCcccCChhhc-cchhhhceeccccc-chhhcChHh-hhhhHhhhHHHhhcCCchhhhhhhHhhhHH----
Confidence 44567776664442111111 22366888888766 444332222 23456666666655 567664433333333
Q ss_pred CcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccc
Q 044749 247 CLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRH 283 (413)
Q Consensus 247 ~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 283 (413)
.|+.|.+.-+. ++. ..+......++|..|.+.+.
T Consensus 141 slqrLllNan~--i~C-ir~~al~dL~~l~lLslyDn 174 (498)
T KOG4237|consen 141 SLQRLLLNANH--INC-IRQDALRDLPSLSLLSLYDN 174 (498)
T ss_pred HHHHHhcChhh--hcc-hhHHHHHHhhhcchhcccch
Confidence 56666555443 111 12223334677777777653
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.25 E-value=0.0036 Score=56.35 Aligned_cols=43 Identities=33% Similarity=0.623 Sum_probs=35.9
Q ss_pred ccccCCCCcchHHHHHHHHHhhcCCcchhhHHHHHhHHHHHhhc
Q 044749 61 TEYQSQYPDQVLEIVLENVLQFLTSRRDRNAASLVCKSWWRAEA 104 (413)
Q Consensus 61 ~d~~~~LP~e~~~~il~~Ifs~L~~~~d~~~~~~vcr~W~~~~~ 104 (413)
.|.+..||...|+.|-+.||+|| +..+++.|-+|||+|+++..
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyl-d~~sLc~celv~k~W~r~l~ 114 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYL-DALSLCACELVCKEWKRVLS 114 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhc-chhhhhHHHHHHHHHHHHhc
Confidence 45677899444444999999999 69999999999999999744
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.23 E-value=0.0051 Score=38.49 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEcccccccc
Q 044749 192 SGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTD 232 (413)
Q Consensus 192 ~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~ 232 (413)
++|++|+++++ .+++ +.....+|++|+.|++++|.|++
T Consensus 1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCCCCCC
Confidence 35667777666 5543 33334567777777777776654
No 56
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.22 E-value=0.00012 Score=59.63 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=8.0
Q ss_pred cCCCCCEEEeeccc
Q 044749 353 VCANLTSLNFSYAT 366 (413)
Q Consensus 353 ~~~~L~~L~Ls~~~ 366 (413)
..++|+.|.+..+.
T Consensus 148 ~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 148 KLTNLQILSLRDND 161 (264)
T ss_pred hhcceeEEeeccCc
Confidence 34556666666555
No 57
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.19 E-value=0.0063 Score=33.20 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=15.3
Q ss_pred CCCCcEEEeCCCCCCChHHHHHHH
Q 044749 191 FSGFKELTLVCCEGFGTCGLAFIA 214 (413)
Q Consensus 191 ~~~L~~L~L~~c~~~~~~~l~~~~ 214 (413)
|++|+.|+|++|.++++.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 356666666666666666666554
No 58
>PLN03150 hypothetical protein; Provisional
Probab=96.15 E-value=0.0073 Score=61.62 Aligned_cols=103 Identities=17% Similarity=0.103 Sum_probs=55.4
Q ss_pred CcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCC
Q 044749 194 FKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSP 273 (413)
Q Consensus 194 L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~ 273 (413)
++.|+|+++ .+... +......+++|+.|+|++|.+....+..+.. +++|+.|+|+++.. ... +......++
T Consensus 420 v~~L~L~~n-~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~----l~~L~~LdLs~N~l--sg~-iP~~l~~L~ 490 (623)
T PLN03150 420 IDGLGLDNQ-GLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGS----ITSLEVLDLSYNSF--NGS-IPESLGQLT 490 (623)
T ss_pred EEEEECCCC-Ccccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhC----CCCCCEEECCCCCC--CCC-CchHHhcCC
Confidence 667777766 44321 2223456778888888887776554333443 34788888877741 110 111223477
Q ss_pred CCcEEEcccccChHHHHHHHhc-CCCCceeccc
Q 044749 274 FLRKLRLNRHVSIRQLYRLMVR-APQLTHLGTG 305 (413)
Q Consensus 274 ~L~~L~l~~~~~~~~l~~ll~~-~p~L~~L~l~ 305 (413)
+|+.|+++++.-...+...+.. ..++..+++.
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred CCCEEECcCCcccccCChHHhhccccCceEEec
Confidence 8888888775322222222222 3345555554
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.81 E-value=0.0051 Score=53.75 Aligned_cols=41 Identities=29% Similarity=0.357 Sum_probs=24.1
Q ss_pred CCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEcccccccc
Q 044749 192 SGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTD 232 (413)
Q Consensus 192 ~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~ 232 (413)
|+|++|.++....-...++..++..||+|++|++++|.|.+
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 45677766644212223455556666777777777776654
No 60
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.79 E-value=0.0094 Score=40.31 Aligned_cols=58 Identities=28% Similarity=0.264 Sum_probs=37.9
Q ss_pred CcCcEEEccccccccccchhhhccCccCCCcceEEeccccC-CCCHHHHHHHHHhCCCCcEEEcccc
Q 044749 218 RQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDC-AINFEALEKLVARSPFLRKLRLNRH 283 (413)
Q Consensus 218 ~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~ 283 (413)
|+|++|++.+|.+..-...++.. +++|+.|+++++.- .+... ....+++|++|+++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~----l~~L~~L~l~~N~l~~i~~~----~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSN----LPNLETLDLSNNNLTSIPPD----AFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTT----GTTESEEEETSSSESEEETT----TTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcC----CCCCCEeEccCCccCccCHH----HHcCCCCCCEEeCcCC
Confidence 57899999999877544333444 45999999987731 11111 2235788888888764
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.77 E-value=0.0012 Score=57.52 Aligned_cols=107 Identities=18% Similarity=0.194 Sum_probs=69.6
Q ss_pred hCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEcccccccc-ccchhhhccCccCCCcceEEeccccCCCCHHHHHHH
Q 044749 190 SFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTD-DEVDWISLFPEGETCLESLIFDCVDCAINFEALEKL 268 (413)
Q Consensus 190 ~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l 268 (413)
.+..|+.|++.+| ++++.. . ...+|+|++|.++.|+... .+ +..+...||+|++|+++++...+ ...+..+
T Consensus 41 ~~~~le~ls~~n~-gltt~~--~-~P~Lp~LkkL~lsdn~~~~~~~---l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl 112 (260)
T KOG2739|consen 41 EFVELELLSVINV-GLTTLT--N-FPKLPKLKKLELSDNYRRVSGG---LEVLAEKAPNLKVLNLSGNKIKD-LSTLRPL 112 (260)
T ss_pred cccchhhhhhhcc-ceeecc--c-CCCcchhhhhcccCCccccccc---ceehhhhCCceeEEeecCCcccc-ccccchh
Confidence 3456777777777 443311 1 2347899999999995332 22 55555677899999999986221 3344444
Q ss_pred HHhCCCCcEEEccccc--ChHH-HHHHHhcCCCCceeccc
Q 044749 269 VARSPFLRKLRLNRHV--SIRQ-LYRLMVRAPQLTHLGTG 305 (413)
Q Consensus 269 ~~~~~~L~~L~l~~~~--~~~~-l~~ll~~~p~L~~L~l~ 305 (413)
.. ..+|.+|++.+|. +... -..++.-+|+|+.|+-.
T Consensus 113 ~~-l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 113 KE-LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hh-hcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 43 7889999999883 2222 24566678888888854
No 62
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.43 E-value=0.011 Score=56.86 Aligned_cols=81 Identities=23% Similarity=0.170 Sum_probs=42.2
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhC-CCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESF-SGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGE 245 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~-~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~ 245 (413)
+.++.|++.++.+++- ....... ++|+.|++++. .+.. +..-...+++|+.|++++|.+.+-.. .. ...
T Consensus 116 ~~l~~L~l~~n~i~~i--~~~~~~~~~nL~~L~l~~N-~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~--~~---~~~ 185 (394)
T COG4886 116 TNLTSLDLDNNNITDI--PPLIGLLKSNLKELDLSDN-KIES--LPSPLRNLPNLKNLDLSFNDLSDLPK--LL---SNL 185 (394)
T ss_pred cceeEEecCCcccccC--ccccccchhhccccccccc-chhh--hhhhhhccccccccccCCchhhhhhh--hh---hhh
Confidence 5677777776654431 1112222 26777777655 3222 11224557777777777777555320 11 023
Q ss_pred CCcceEEecccc
Q 044749 246 TCLESLIFDCVD 257 (413)
Q Consensus 246 ~~L~~L~L~~~~ 257 (413)
++|+.|+++++.
T Consensus 186 ~~L~~L~ls~N~ 197 (394)
T COG4886 186 SNLNNLDLSGNK 197 (394)
T ss_pred hhhhheeccCCc
Confidence 467777776664
No 63
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.24 E-value=0.0095 Score=59.42 Aligned_cols=31 Identities=29% Similarity=0.274 Sum_probs=21.1
Q ss_pred CCCEEEeecccCChhhHHHHHhcCCCCCEEEeec
Q 044749 356 NLTSLNFSYATITADQLKPVICNCHKLQIFGPSI 389 (413)
Q Consensus 356 ~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~ 389 (413)
.|..|.|++|.++. +.. +.+..+|+.|++++
T Consensus 233 ~L~~L~lrnN~l~t--L~g-ie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 233 KLQLLNLRNNALTT--LRG-IENLKSLYGLDLSY 263 (1096)
T ss_pred hheeeeecccHHHh--hhh-HHhhhhhhccchhH
Confidence 38888998887532 223 34667888888866
No 64
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.11 E-value=0.015 Score=30.90 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=16.8
Q ss_pred CCCCCEEEeecccCChhhHHHHH
Q 044749 354 CANLTSLNFSYATITADQLKPVI 376 (413)
Q Consensus 354 ~~~L~~L~Ls~~~it~~~l~~l~ 376 (413)
|++|++|+|++|.|+++++..+.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 47899999999999998887763
No 65
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.06 E-value=0.00016 Score=58.83 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=6.2
Q ss_pred HhCCcCcEEEcccc
Q 044749 215 SKCRQLRVLDLIET 228 (413)
Q Consensus 215 ~~~~~L~~L~L~~~ 228 (413)
++++.|+.|++.-|
T Consensus 76 ssl~klr~lnvgmn 89 (264)
T KOG0617|consen 76 SSLPKLRILNVGMN 89 (264)
T ss_pred hhchhhhheecchh
Confidence 33444444444433
No 66
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.84 E-value=0.025 Score=50.69 Aligned_cols=40 Identities=25% Similarity=0.467 Sum_probs=30.7
Q ss_pred cccCCCCcchHHHHHHHHHhhc----CCcchhhHHHHHhHHHHHhhcC
Q 044749 62 EYQSQYPDQVLEIVLENVLQFL----TSRRDRNAASLVCKSWWRAEAL 105 (413)
Q Consensus 62 d~~~~LP~e~~~~il~~Ifs~L----~~~~d~~~~~~vcr~W~~~~~~ 105 (413)
+.+..|||| ||..||... -+.+++.++++|||.|+..++.
T Consensus 105 ~~~~~LPdE----vLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~ 148 (366)
T KOG2997|consen 105 ISISVLPDE----VLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARD 148 (366)
T ss_pred hhhhhCCHH----HHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcC
Confidence 447899999 666666532 2679999999999999986543
No 67
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=94.82 E-value=0.019 Score=53.66 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=34.2
Q ss_pred cCCCCcchHHHHHHHHHhhcCCcchhhHHHHHhHHHHHhhc
Q 044749 64 QSQYPDQVLEIVLENVLQFLTSRRDRNAASLVCKSWWRAEA 104 (413)
Q Consensus 64 ~~~LP~e~~~~il~~Ifs~L~~~~d~~~~~~vcr~W~~~~~ 104 (413)
++.||+| +|..|..+|+..-|+.+.+.|||.||....
T Consensus 4 Ws~Lp~d----ll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 4 WSTLPEE----LLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhhCCHH----HHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 5789999 999999999889999999999999999754
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.63 E-value=0.027 Score=53.48 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=36.6
Q ss_pred CCCCcEEEeCCCCCCChHHHHHHHHhCC-cCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHH
Q 044749 191 FSGFKELTLVCCEGFGTCGLAFIASKCR-QLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLV 269 (413)
Q Consensus 191 ~~~L~~L~L~~c~~~~~~~l~~~~~~~~-~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~ 269 (413)
+.+++.|.+++| .+.. ++ .+| +|++|.+.+|.--...+ ..+ .++|+.|++.+|. .+.
T Consensus 51 ~~~l~~L~Is~c-~L~s--LP----~LP~sLtsL~Lsnc~nLtsLP---~~L---P~nLe~L~Ls~Cs-~L~-------- 108 (426)
T PRK15386 51 ARASGRLYIKDC-DIES--LP----VLPNELTEITIENCNNLTTLP---GSI---PEGLEKLTVCHCP-EIS-------- 108 (426)
T ss_pred hcCCCEEEeCCC-CCcc--cC----CCCCCCcEEEccCCCCcccCC---chh---hhhhhheEccCcc-ccc--------
Confidence 477888888877 4432 11 133 57777777654111110 011 1377777777763 121
Q ss_pred HhCCCCcEEEccc
Q 044749 270 ARSPFLRKLRLNR 282 (413)
Q Consensus 270 ~~~~~L~~L~l~~ 282 (413)
.-.++|+.|++..
T Consensus 109 sLP~sLe~L~L~~ 121 (426)
T PRK15386 109 GLPESVRSLEIKG 121 (426)
T ss_pred ccccccceEEeCC
Confidence 1134567777653
No 69
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.52 E-value=0.037 Score=29.40 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=12.8
Q ss_pred CCCcEEeeeCCccCHHHHHHHH
Q 044749 167 PWLEKVYLKRMSITDDDLALLA 188 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~ 188 (413)
++|++|+|+++.|+++++..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 5666666666666666666554
No 70
>PLN03150 hypothetical protein; Provisional
Probab=94.48 E-value=0.047 Score=55.78 Aligned_cols=106 Identities=10% Similarity=0.071 Sum_probs=69.7
Q ss_pred CcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCc
Q 044749 169 LEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCL 248 (413)
Q Consensus 169 L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L 248 (413)
++.|+|+++.++......+. .+++|+.|+|+++ .+.. .+......+++|+.|+|++|.+....+..+..+. +|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N-~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~----~L 492 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGN-SIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT----SL 492 (623)
T ss_pred EEEEECCCCCccccCCHHHh-CCCCCCEEECCCC-cccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC----CC
Confidence 77889998876543333344 3589999999988 5543 2333456799999999999998876655566554 99
Q ss_pred ceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccc
Q 044749 249 ESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRH 283 (413)
Q Consensus 249 ~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 283 (413)
+.|+|+++. +....-..+.....++..+++.++
T Consensus 493 ~~L~Ls~N~--l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 493 RILNLNGNS--LSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CEEECcCCc--ccccCChHHhhccccCceEEecCC
Confidence 999999884 111111112222345567777654
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.83 E-value=0.0052 Score=59.54 Aligned_cols=100 Identities=22% Similarity=0.179 Sum_probs=48.4
Q ss_pred CCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHh
Q 044749 192 SGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVAR 271 (413)
Q Consensus 192 ~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~ 271 (413)
.+|+.|++... .+. .+.....++++|++|++++|.|++-. .+..+. .|+.|++.++. -...++++ .
T Consensus 95 ~~l~~l~l~~n-~i~--~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~----~L~~L~l~~N~-i~~~~~~~----~ 160 (414)
T KOG0531|consen 95 KSLEALDLYDN-KIE--KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLT----LLKELNLSGNL-ISDISGLE----S 160 (414)
T ss_pred cceeeeecccc-chh--hcccchhhhhcchheecccccccccc--chhhcc----chhhheeccCc-chhccCCc----c
Confidence 45666666544 222 12222345677777777777665421 033333 57777776664 11111111 1
Q ss_pred CCCCcEEEcccccChHHHHHH-HhcCCCCceecccC
Q 044749 272 SPFLRKLRLNRHVSIRQLYRL-MVRAPQLTHLGTGK 306 (413)
Q Consensus 272 ~~~L~~L~l~~~~~~~~l~~l-l~~~p~L~~L~l~~ 306 (413)
++.|+.++++++. +..+... +..+..++.+.++.
T Consensus 161 l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 161 LKSLKLLDLSYNR-IVDIENDELSELISLEELDLGG 195 (414)
T ss_pred chhhhcccCCcch-hhhhhhhhhhhccchHHHhccC
Confidence 4556666666542 1222111 35566666666653
No 72
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.67 E-value=0.032 Score=47.02 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=6.3
Q ss_pred CCcCcEEEccccc
Q 044749 217 CRQLRVLDLIETE 229 (413)
Q Consensus 217 ~~~L~~L~L~~~~ 229 (413)
.|+|++|.|.+|+
T Consensus 87 ~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 87 LPNLKTLILTNNS 99 (233)
T ss_pred ccccceEEecCcc
Confidence 4444555554444
No 73
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.94 E-value=0.054 Score=50.51 Aligned_cols=105 Identities=16% Similarity=0.136 Sum_probs=56.8
Q ss_pred HhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEecccc-CCCCHHHHHH
Q 044749 189 ESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVD-CAINFEALEK 267 (413)
Q Consensus 189 ~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~l~~ 267 (413)
..+++|..|+|++. -+. .++.-......|++|+++.|.+..- ++.+..+. .||.+-.+... ..++..++.
T Consensus 432 ~~l~kLt~L~L~NN-~Ln--~LP~e~~~lv~Lq~LnlS~NrFr~l-P~~~y~lq----~lEtllas~nqi~~vd~~~l~- 502 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNN-LLN--DLPEEMGSLVRLQTLNLSFNRFRML-PECLYELQ----TLETLLASNNQIGSVDPSGLK- 502 (565)
T ss_pred Hhhhcceeeecccc-hhh--hcchhhhhhhhhheecccccccccc-hHHHhhHH----HHHHHHhccccccccChHHhh-
Confidence 34467777777754 111 1222233455577888877753221 11122222 34444333331 134444442
Q ss_pred HHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccC
Q 044749 268 LVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGK 306 (413)
Q Consensus 268 l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~ 306 (413)
.+.+|+.|++.+ ..+..+...+.++.+|++|.+.+
T Consensus 503 ---nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~g 537 (565)
T KOG0472|consen 503 ---NMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDG 537 (565)
T ss_pred ---hhhhcceeccCC-CchhhCChhhccccceeEEEecC
Confidence 356788888876 33556677888888888888874
No 74
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.82 E-value=0.11 Score=43.85 Aligned_cols=88 Identities=24% Similarity=0.272 Sum_probs=57.7
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHH-HHHHHHhCCcCcEEEccccccccccchhhhccCc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCG-LAFIASKCRQLRVLDLIETEVTDDEVDWISLFPE 243 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~-l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~ 243 (413)
.++.|..|.+.++.|+.-+- .+...+|+|+.|.|.+. ++..-+ +.. ...||.|+.|.+-+|.+.+.. .|=..+..
T Consensus 62 ~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnN-si~~l~dl~p-La~~p~L~~Ltll~Npv~~k~-~YR~yvl~ 137 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNN-SIQELGDLDP-LASCPKLEYLTLLGNPVEHKK-NYRLYVLY 137 (233)
T ss_pred CccccceEEecCCcceeecc-chhhhccccceEEecCc-chhhhhhcch-hccCCccceeeecCCchhccc-CceeEEEE
Confidence 56788999999987764322 34566789999999986 433221 222 345999999999999877643 11111222
Q ss_pred cCCCcceEEeccc
Q 044749 244 GETCLESLIFDCV 256 (413)
Q Consensus 244 ~~~~L~~L~L~~~ 256 (413)
..|+|+.|++.+.
T Consensus 138 klp~l~~LDF~kV 150 (233)
T KOG1644|consen 138 KLPSLRTLDFQKV 150 (233)
T ss_pred ecCcceEeehhhh
Confidence 3448888887766
No 75
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=92.69 E-value=0.081 Score=49.21 Aligned_cols=87 Identities=17% Similarity=0.123 Sum_probs=51.7
Q ss_pred hhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCc
Q 044749 164 NAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPE 243 (413)
Q Consensus 164 ~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~ 243 (413)
+.+++|++|+|+++.++.-.-.++... ..+++|.|... .+.... ..+..++.+|++|+|++|+|+--....+..
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~-a~l~eL~L~~N-~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~~~aF~~--- 344 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGA-AELQELYLTRN-KLEFVS-SGMFQGLSGLKTLSLYDNQITTVAPGAFQT--- 344 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcch-hhhhhhhcCcc-hHHHHH-HHhhhccccceeeeecCCeeEEEecccccc---
Confidence 356788888888886665433333333 56777777765 322111 123456778888888888877544222332
Q ss_pred cCCCcceEEecccc
Q 044749 244 GETCLESLIFDCVD 257 (413)
Q Consensus 244 ~~~~L~~L~L~~~~ 257 (413)
...|.+|+|-.+.
T Consensus 345 -~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 345 -LFSLSTLNLLSNP 357 (498)
T ss_pred -cceeeeeehccCc
Confidence 3377777776553
No 76
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=92.42 E-value=0.17 Score=48.76 Aligned_cols=172 Identities=17% Similarity=0.179 Sum_probs=101.5
Q ss_pred CCCcEEEeCCCCCCChHHHHHHHHhC-CcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHH
Q 044749 192 SGFKELTLVCCEGFGTCGLAFIASKC-RQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVA 270 (413)
Q Consensus 192 ~~L~~L~L~~c~~~~~~~l~~~~~~~-~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~ 270 (413)
+.++.|.+.+. .++. +....... ++|+.|+++++.+.... ..+. .+++|+.|++..+. +. .+.....
T Consensus 116 ~~l~~L~l~~n-~i~~--i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~----~l~~L~~L~l~~N~--l~--~l~~~~~ 183 (394)
T COG4886 116 TNLTSLDLDNN-NITD--IPPLIGLLKSNLKELDLSDNKIESLP-SPLR----NLPNLKNLDLSFND--LS--DLPKLLS 183 (394)
T ss_pred cceeEEecCCc-cccc--Cccccccchhhcccccccccchhhhh-hhhh----ccccccccccCCch--hh--hhhhhhh
Confidence 56888888765 3332 22333334 38999999999876531 0133 45599999998885 22 2322332
Q ss_pred hCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhh
Q 044749 271 RSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSA 349 (413)
Q Consensus 271 ~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~ 349 (413)
..+.|+.|++++.. +..+.........|++|.++.... ...........++..+. ....+.+ +..
T Consensus 184 ~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~-----------~~~~~~~~~~~~l~~l~l~~n~~~~--~~~ 249 (394)
T COG4886 184 NLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSI-----------IELLSSLSNLKNLSGLELSNNKLED--LPE 249 (394)
T ss_pred hhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcc-----------eecchhhhhcccccccccCCceeee--ccc
Confidence 57889999998852 344444444455688888773211 11122233344444443 1112211 123
Q ss_pred HhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccc
Q 044749 350 IYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYV 392 (413)
Q Consensus 350 l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~ 392 (413)
.....++|+.|+++.+.+++-.- +....+|+.|++.+-..
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSL 289 (394)
T ss_pred hhccccccceecccccccccccc---ccccCccCEEeccCccc
Confidence 33566789999999998765432 56778999999988544
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=92.06 E-value=0.25 Score=27.36 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=18.2
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESF 191 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~ 191 (413)
++|++|+|+++.+++++...+++.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 5677788888777777777776653
No 78
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.66 E-value=0.078 Score=50.40 Aligned_cols=136 Identities=13% Similarity=0.139 Sum_probs=75.9
Q ss_pred HhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHh
Q 044749 215 SKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMV 294 (413)
Q Consensus 215 ~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~ 294 (413)
..|++++.|++++|.+. .++.--.+|++|.+.+|........ .-.++|++|++++|..+..+
T Consensus 49 ~~~~~l~~L~Is~c~L~--------sLP~LP~sLtsL~Lsnc~nLtsLP~-----~LP~nLe~L~Ls~Cs~L~sL----- 110 (426)
T PRK15386 49 EEARASGRLYIKDCDIE--------SLPVLPNELTEITIENCNNLTTLPG-----SIPEGLEKLTVCHCPEISGL----- 110 (426)
T ss_pred HHhcCCCEEEeCCCCCc--------ccCCCCCCCcEEEccCCCCcccCCc-----hhhhhhhheEccCccccccc-----
Confidence 35899999999998633 3332234799999999852111111 01368999999998544422
Q ss_pred cCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc--CCcccChhhHhhHhhcCCCCCEEEeecccCChhhH
Q 044749 295 RAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS--GFREITPDYLSAIYPVCANLTSLNFSYATITADQL 372 (413)
Q Consensus 295 ~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~--~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l 372 (413)
.+.|+.|.+..+.. ..+..++ ++|+.|. ++.......++.. --++|++|++++|....
T Consensus 111 -P~sLe~L~L~~n~~-----------~~L~~LP---ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~--- 170 (426)
T PRK15386 111 -PESVRSLEIKGSAT-----------DSIKNVP---NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII--- 170 (426)
T ss_pred -ccccceEEeCCCCC-----------cccccCc---chHhheeccccccccccccccc--cCCcccEEEecCCCccc---
Confidence 35688888763211 1111111 2455554 2211111111111 12689999999988321
Q ss_pred HHHHhcC-CCCCEEEeecc
Q 044749 373 KPVICNC-HKLQIFGPSIQ 390 (413)
Q Consensus 373 ~~l~~~~-~~L~~L~l~~c 390 (413)
+.... .+|+.|++..+
T Consensus 171 --LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 171 --LPEKLPESLQSITLHIE 187 (426)
T ss_pred --CcccccccCcEEEeccc
Confidence 11112 48999998764
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=91.39 E-value=0.25 Score=27.30 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=19.7
Q ss_pred CCCCEEEeecccCChhhHHHHHh
Q 044749 355 ANLTSLNFSYATITADQLKPVIC 377 (413)
Q Consensus 355 ~~L~~L~Ls~~~it~~~l~~l~~ 377 (413)
++|++|+|++|.++++++..+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 57999999999999999877654
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=90.33 E-value=0.54 Score=45.81 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=54.4
Q ss_pred HHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEcccc--ccccccchhhhccCccCCCcceEEeccccCCC--
Q 044749 185 ALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIET--EVTDDEVDWISLFPEGETCLESLIFDCVDCAI-- 260 (413)
Q Consensus 185 ~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~--~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-- 260 (413)
..+....|.+..++|+++.-..-+++..++...|+|+.|+|++| .+..+ .++..+. ..-||+|.+.|+....
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k--~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLK--GLPLEELVLEGNPLCTTF 286 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhc--CCCHHHeeecCCccccch
Confidence 44455556677777776644445566667777788888888877 33322 1233332 3467788887774211
Q ss_pred --CHHHHHHHHHhCCCCcEEEc
Q 044749 261 --NFEALEKLVARSPFLRKLRL 280 (413)
Q Consensus 261 --~~~~l~~l~~~~~~L~~L~l 280 (413)
..+.+..+....|+|..||=
T Consensus 287 ~~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 287 SDRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred hhhHHHHHHHHHhcchheeecC
Confidence 13445556666787777753
No 81
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=89.10 E-value=0.18 Score=39.93 Aligned_cols=11 Identities=45% Similarity=0.549 Sum_probs=6.2
Q ss_pred CCCCcEEEccc
Q 044749 272 SPFLRKLRLNR 282 (413)
Q Consensus 272 ~~~L~~L~l~~ 282 (413)
.|.|++|+++.
T Consensus 99 m~aLr~lNl~~ 109 (177)
T KOG4579|consen 99 MPALRSLNLRF 109 (177)
T ss_pred hHHhhhccccc
Confidence 45555555554
No 82
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.38 E-value=0.31 Score=23.39 Aligned_cols=11 Identities=18% Similarity=0.117 Sum_probs=5.1
Q ss_pred CCCEEEeeccc
Q 044749 381 KLQIFGPSIQY 391 (413)
Q Consensus 381 ~L~~L~l~~c~ 391 (413)
+|+.|+|++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 45555555554
No 83
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=88.29 E-value=0.53 Score=25.53 Aligned_cols=25 Identities=20% Similarity=0.509 Sum_probs=20.0
Q ss_pred CCCEEEeecccC-ChhhHHHHHhcCC
Q 044749 356 NLTSLNFSYATI-TADQLKPVICNCH 380 (413)
Q Consensus 356 ~L~~L~Ls~~~i-t~~~l~~l~~~~~ 380 (413)
+||.|.|.+..+ +++.+..+++.||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 488999998885 4447899998887
No 84
>PF13013 F-box-like_2: F-box-like domain
Probab=87.94 E-value=0.81 Score=34.84 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=25.8
Q ss_pred cCCCCcchHHHHHHHHHhhcCCcchhhHHHHHhH
Q 044749 64 QSQYPDQVLEIVLENVLQFLTSRRDRNAASLVCK 97 (413)
Q Consensus 64 ~~~LP~e~~~~il~~Ifs~L~~~~d~~~~~~vcr 97 (413)
+.+||+| |+..||.+. +..+...+...|+
T Consensus 22 l~DLP~E----Ll~~I~~~C-~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWE----LLQLIFDYC-NDPILLALSRTCR 50 (109)
T ss_pred hhhChHH----HHHHHHhhc-CcHHHHHHHHHHH
Confidence 5679999 999999999 5999988888888
No 85
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=87.11 E-value=0.25 Score=25.54 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=10.0
Q ss_pred CCCEEEeecccccCCCchh
Q 044749 381 KLQIFGPSIQYVMKDFRPW 399 (413)
Q Consensus 381 ~L~~L~l~~c~~i~d~~~~ 399 (413)
+|+.|+|++| .++.++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp TESEEEETSS-EESEEGTT
T ss_pred CccEEECCCC-cCEeCChh
Confidence 4666666666 44444443
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=82.25 E-value=1.3 Score=43.28 Aligned_cols=98 Identities=16% Similarity=0.067 Sum_probs=64.7
Q ss_pred chHHHHHHHhhCCCCcEEeeeCCcc-CHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccc
Q 044749 155 FGPWVCVLANAYPWLEKVYLKRMSI-TDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDD 233 (413)
Q Consensus 155 ~~~~l~~l~~~~~~L~~L~L~~~~l-~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~ 233 (413)
..+.+......+|.+..++|+++.+ .-+.+..++...|+|+.|+|++....-......--.....|++|-+.+|.+...
T Consensus 206 M~~~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 206 MAAVLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred hHHHHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 3444556666889999999999854 456677788888999999999862221111111112345688999999876543
Q ss_pred c---chhhhccCccCCCcceEE
Q 044749 234 E---VDWISLFPEGETCLESLI 252 (413)
Q Consensus 234 ~---~~~l~~l~~~~~~L~~L~ 252 (413)
- .+++..+.+.+|.|..|+
T Consensus 286 f~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 286 FSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhhhHHHHHHHHHhcchheeec
Confidence 2 345665556666777775
No 87
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=81.71 E-value=0.63 Score=46.46 Aligned_cols=42 Identities=26% Similarity=0.462 Sum_probs=37.0
Q ss_pred ccccccCCCCcchHHHHHHHHHhhcCCcchhhHHHHHhHHHHHhhcC
Q 044749 59 TVTEYQSQYPDQVLEIVLENVLQFLTSRRDRNAASLVCKSWWRAEAL 105 (413)
Q Consensus 59 ~~~d~~~~LP~e~~~~il~~Ifs~L~~~~d~~~~~~vcr~W~~~~~~ 105 (413)
...|.+..||.| +...||.|| +.+++..++.||+.|+.+...
T Consensus 103 ~~~dfi~~lp~e----l~~~il~~L-d~~~l~~~~~v~~~w~~~~~~ 144 (537)
T KOG0274|consen 103 GQRDFLSLLPSE----LSLHILSFL-DGRDLLAVRQVCRNWNKLLDD 144 (537)
T ss_pred cccchhhcccch----hcccccccC-CHHHhhhhhhhcchhhhhhhc
Confidence 446778999999 999999999 599999999999999987543
No 88
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=80.26 E-value=1.4 Score=35.11 Aligned_cols=104 Identities=17% Similarity=0.167 Sum_probs=59.8
Q ss_pred CCcEEeeeCCccC--HHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccC
Q 044749 168 WLEKVYLKRMSIT--DDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGE 245 (413)
Q Consensus 168 ~L~~L~L~~~~l~--~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~ 245 (413)
.+..++|+.|.+- .+.+..+... ..|...+|++. .+.+ .-..+....+.+++|+|.+|.|.+-..+ +..++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~-~el~~i~ls~N-~fk~-fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~--- 100 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKG-YELTKISLSDN-GFKK-FPKKFTIKFPTATTLNLANNEISDVPEE-LAAMP--- 100 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCC-ceEEEEecccc-hhhh-CCHHHhhccchhhhhhcchhhhhhchHH-HhhhH---
Confidence 3455667776432 1222223322 45667777765 3321 1124455677899999999998886544 66655
Q ss_pred CCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccc
Q 044749 246 TCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRH 283 (413)
Q Consensus 246 ~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 283 (413)
.|+.|+++.+........+. ...+|-.|+..+.
T Consensus 101 -aLr~lNl~~N~l~~~p~vi~----~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 101 -ALRSLNLRFNPLNAEPRVIA----PLIKLDMLDSPEN 133 (177)
T ss_pred -HhhhcccccCccccchHHHH----HHHhHHHhcCCCC
Confidence 99999998885222222222 1444555655543
No 89
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=75.30 E-value=3.4 Score=37.92 Aligned_cols=79 Identities=15% Similarity=0.145 Sum_probs=56.3
Q ss_pred chHHHHHHHhhCCCCcEEeeeCC-ccCHHHHHHHHHhCCC---CcEEEeCCCCCCChH---HHHHHHHhCCcCcEEEccc
Q 044749 155 FGPWVCVLANAYPWLEKVYLKRM-SITDDDLALLAESFSG---FKELTLVCCEGFGTC---GLAFIASKCRQLRVLDLIE 227 (413)
Q Consensus 155 ~~~~l~~l~~~~~~L~~L~L~~~-~l~~~~l~~l~~~~~~---L~~L~L~~c~~~~~~---~l~~~~~~~~~L~~L~L~~ 227 (413)
+...+..+...-+++++++++++ .|+...+..+...+.+ .+...+.+. ..++. ++..+..-|+.|++|++.+
T Consensus 186 ~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnves 264 (353)
T KOG3735|consen 186 VESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVES 264 (353)
T ss_pred HHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheeccc
Confidence 56667777777899999999998 7888888777766543 555666654 33322 3445566788888888888
Q ss_pred ccccccc
Q 044749 228 TEVTDDE 234 (413)
Q Consensus 228 ~~i~~~~ 234 (413)
|.|+..+
T Consensus 265 nFItg~g 271 (353)
T KOG3735|consen 265 NFITGLG 271 (353)
T ss_pred cccccHH
Confidence 8888766
No 90
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=72.11 E-value=1.2 Score=43.15 Aligned_cols=79 Identities=22% Similarity=0.198 Sum_probs=42.8
Q ss_pred hCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhc
Q 044749 216 KCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVR 295 (413)
Q Consensus 216 ~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~ 295 (413)
.|..++.+.+..+.|.... ..+. .+.+|+.|++.+.. ...+......+++|++|+++++. ++.+.. +..
T Consensus 70 ~l~~l~~l~l~~n~i~~~~-~~l~----~~~~l~~l~l~~n~----i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~ 138 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKIL-NHLS----KLKSLEALDLYDNK----IEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LST 138 (414)
T ss_pred HhHhHHhhccchhhhhhhh-cccc----cccceeeeeccccc----hhhcccchhhhhcchheeccccc-cccccc-hhh
Confidence 3556666667776665410 0133 34488899888774 22233223347888888888752 222111 122
Q ss_pred CCCCceeccc
Q 044749 296 APQLTHLGTG 305 (413)
Q Consensus 296 ~p~L~~L~l~ 305 (413)
++.|+.|.+.
T Consensus 139 l~~L~~L~l~ 148 (414)
T KOG0531|consen 139 LTLLKELNLS 148 (414)
T ss_pred ccchhhheec
Confidence 3446666665
No 91
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=50.50 E-value=13 Score=19.63 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=9.5
Q ss_pred CcCcEEEcccccccc
Q 044749 218 RQLRVLDLIETEVTD 232 (413)
Q Consensus 218 ~~L~~L~L~~~~i~~ 232 (413)
++|+.|+|.+|.|..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 466777777766443
No 92
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=50.50 E-value=13 Score=19.63 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=9.5
Q ss_pred CcCcEEEcccccccc
Q 044749 218 RQLRVLDLIETEVTD 232 (413)
Q Consensus 218 ~~L~~L~L~~~~i~~ 232 (413)
++|+.|+|.+|.|..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 466777777766443
No 93
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=45.99 E-value=4.2 Score=40.24 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=30.7
Q ss_pred ccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHH-HHHhcCCCCCEEEeecc
Q 044749 333 LVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLK-PVICNCHKLQIFGPSIQ 390 (413)
Q Consensus 333 L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~-~l~~~~~~L~~L~l~~c 390 (413)
|..|. .|+.+. .++.-+..++.|+.|-|.+|.++..-.. -..+..+=-+.|++.-|
T Consensus 213 Li~lDfScNkis--~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 213 LIRLDFSCNKIS--YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeecccCcee--ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 44444 444442 3444445678888888888885443222 11223334566777777
No 94
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=45.65 E-value=19 Score=32.06 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=29.0
Q ss_pred cccCCCCcchHHHHHHHHHhhcCCcchhhHHHHHhHHHH
Q 044749 62 EYQSQYPDQVLEIVLENVLQFLTSRRDRNAASLVCKSWW 100 (413)
Q Consensus 62 d~~~~LP~e~~~~il~~Ifs~L~~~~d~~~~~~vcr~W~ 100 (413)
-.+.+||.| ++.+|+.+|++.+|+..++.|-..-.
T Consensus 200 ltl~dLP~e----~vl~Il~rlsDh~dL~s~aqa~etl~ 234 (332)
T KOG3926|consen 200 LTLHDLPLE----CVLNILLRLSDHRDLESLAQAWETLA 234 (332)
T ss_pred CCcccchHH----HHHHHHHHccCcchHHHHHHhhHHHH
Confidence 346789999 99999999999999998888755433
No 95
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=45.35 E-value=17 Score=19.61 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=10.0
Q ss_pred CCCCEEEeecccC
Q 044749 355 ANLTSLNFSYATI 367 (413)
Q Consensus 355 ~~L~~L~Ls~~~i 367 (413)
.+|+.|+|++|.|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4688888888776
No 96
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=40.02 E-value=39 Score=31.27 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=61.9
Q ss_pred HHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHH---hCCcCcEEEccccccccccchhhhccCccCCCcceEEecccc
Q 044749 181 DDDLALLAESFSGFKELTLVCCEGFGTCGLAFIAS---KCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVD 257 (413)
Q Consensus 181 ~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~---~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~ 257 (413)
+..+..+-..=++|+..+|++...++...+..+.. .-...+...+.+...+|.....+..+...|+.|++|++.++.
T Consensus 187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnF 266 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNF 266 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccc
Confidence 44555555555789999998877777665554433 344556666666666666655566666777888888888775
Q ss_pred CCCCHHHHHHHHHhC---CCCcEEEcc
Q 044749 258 CAINFEALEKLVARS---PFLRKLRLN 281 (413)
Q Consensus 258 ~~~~~~~l~~l~~~~---~~L~~L~l~ 281 (413)
|+..++.++.... .+|..|.+.
T Consensus 267 --Itg~gi~a~~~al~~n~tl~el~~d 291 (353)
T KOG3735|consen 267 --ITGLGIMALLRALQSNKSLTELKND 291 (353)
T ss_pred --cccHHHHHHHHHHhccchhhHhhhh
Confidence 6666655544432 344444443
No 97
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=38.53 E-value=19 Score=26.67 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=21.5
Q ss_pred cccCCCCcchHHHHHHHHHhhcCCcchhhH
Q 044749 62 EYQSQYPDQVLEIVLENVLQFLTSRRDRNA 91 (413)
Q Consensus 62 d~~~~LP~e~~~~il~~Ifs~L~~~~d~~~ 91 (413)
..|..||.| +-..|+++| +..|+..
T Consensus 70 ~~w~~LP~E----Ik~~Il~~L-~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIE----IKYKILEYL-SNKDLKK 94 (97)
T ss_pred CchhhCCHH----HHHHHHHcC-CHHHHHH
Confidence 567899999 999999999 5888764
No 98
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=32.92 E-value=29 Score=26.91 Aligned_cols=38 Identities=16% Similarity=0.346 Sum_probs=19.9
Q ss_pred hhHhhcCCCCCEEEeeccc-CChhhHHHHHhcCCCCCEEEe
Q 044749 348 SAIYPVCANLTSLNFSYAT-ITADQLKPVICNCHKLQIFGP 387 (413)
Q Consensus 348 ~~l~~~~~~L~~L~Ls~~~-it~~~l~~l~~~~~~L~~L~l 387 (413)
..+...|.+|+. +|+.-. -....+..+...|.+| ...|
T Consensus 54 ~~mF~~~~~l~~-dls~w~~s~v~~~~~mF~~~~~l-~~~l 92 (120)
T PF03382_consen 54 SGMFAGCSSLNQ-DLSNWDTSNVTNMSNMFSGCSSL-NQDL 92 (120)
T ss_pred HHHHhhhhhcCC-CcccccccccccHHHHHhhhHHc-CCch
Confidence 344455666666 665433 2223455566667777 3444
No 99
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=26.47 E-value=26 Score=35.03 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=25.4
Q ss_pred CCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeeccc
Q 044749 354 CANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQY 391 (413)
Q Consensus 354 ~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~ 391 (413)
+-.|..||++.|+|+-- .--+.++..|+.|.|.+-+
T Consensus 210 ~LpLi~lDfScNkis~i--Pv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 210 SLPLIRLDFSCNKISYL--PVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred CCceeeeecccCceeec--chhhhhhhhheeeeeccCC
Confidence 45689999999986532 2224677889999886543
No 100
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=26.20 E-value=25 Score=30.32 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=39.3
Q ss_pred cEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcc
Q 044749 170 EKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLE 249 (413)
Q Consensus 170 ~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~ 249 (413)
++|.+.+..++..++..+--..-+.++-.|++| .+.-.. -.|-+|+.-|+++..+.... +....-.|.++|
T Consensus 129 ~elRfqGvNlSGaDLskLDlr~inFkyA~ls~c-~lshtN-----L~ca~lerADl~gsil~cA~---L~~v~~lcaN~e 199 (302)
T KOG1665|consen 129 EELRFQGVNLSGADLSKLDLRLINFKYANLSNC-NLSHTN-----LQCAKLERADLEGSILHCAI---LREVEMLCANAE 199 (302)
T ss_pred hheeeecccccccchhhcccccccceehhhccc-cccccc-----hhhhhhcccccccchhhhhh---hhhhhheecccc
Confidence 556666655555444443333345666666666 433222 23555666666554333222 333333455666
Q ss_pred eEEecccc
Q 044749 250 SLIFDCVD 257 (413)
Q Consensus 250 ~L~L~~~~ 257 (413)
--.|.+|.
T Consensus 200 GA~L~gcN 207 (302)
T KOG1665|consen 200 GASLKGCN 207 (302)
T ss_pred cccccCcC
Confidence 66666664
No 101
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=24.16 E-value=1.5e+02 Score=19.96 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=23.3
Q ss_pred CCCEEEeecccCChhhHHHHH-----hcCCCCCEEEe
Q 044749 356 NLTSLNFSYATITADQLKPVI-----CNCHKLQIFGP 387 (413)
Q Consensus 356 ~L~~L~Ls~~~it~~~l~~l~-----~~~~~L~~L~l 387 (413)
+-+.+.+..+.++.+.+-.++ +..|+|+.|.+
T Consensus 33 nc~~i~l~~~~~t~~dln~Flk~W~~G~~~~Le~l~i 69 (70)
T PF07735_consen 33 NCKKIELWNSKFTNEDLNKFLKHWINGSNPRLEYLEI 69 (70)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 455677777778888887776 34678888776
No 102
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=22.81 E-value=46 Score=25.60 Aligned_cols=78 Identities=19% Similarity=0.323 Sum_probs=34.9
Q ss_pred HhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc---CCcccChhhHhhHhhcCCCCCEEEeeccc--C
Q 044749 293 MVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS---GFREITPDYLSAIYPVCANLTSLNFSYAT--I 367 (413)
Q Consensus 293 l~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~---~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~--i 367 (413)
+..|.+|+.+.+.. .. ..--..++..+.+|+.+. +...+.+ .....|++|+.+.+.... +
T Consensus 8 F~~~~~l~~i~~~~-~~----------~~I~~~~F~~~~~l~~i~~~~~~~~i~~----~~F~~~~~l~~i~~~~~~~~i 72 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TI----------KKIGENAFSNCTSLKSINFPNNLTSIGD----NAFSNCKSLESITFPNNLKSI 72 (129)
T ss_dssp TTT-TT--EEEETS-T------------EE-TTTTTT-TT-SEEEESSTTSCE-T----TTTTT-TT-EEEEETSTT-EE
T ss_pred HhCCCCCCEEEECC-Ce----------eEeChhhcccccccccccccccccccce----eeeeccccccccccccccccc
Confidence 45577788887652 10 111112345566677666 2222222 122456678888886532 2
Q ss_pred ChhhHHHHHhcCCCCCEEEeec
Q 044749 368 TADQLKPVICNCHKLQIFGPSI 389 (413)
Q Consensus 368 t~~~l~~l~~~~~~L~~L~l~~ 389 (413)
.+. ....|++|+.+.+..
T Consensus 73 ~~~----~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 73 GDN----AFSNCTNLKNIDIPS 90 (129)
T ss_dssp -TT----TTTT-TTECEEEETT
T ss_pred ccc----cccccccccccccCc
Confidence 222 245688888888743
No 103
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=20.03 E-value=60 Score=17.61 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=9.1
Q ss_pred CCCCEEEeecccC
Q 044749 355 ANLTSLNFSYATI 367 (413)
Q Consensus 355 ~~L~~L~Ls~~~i 367 (413)
++|+.|++++|++
T Consensus 2 ~~L~~L~vs~N~L 14 (26)
T smart00364 2 PSLKELNVSNNQL 14 (26)
T ss_pred cccceeecCCCcc
Confidence 3577788877764
Done!