Query 044749
Match_columns 413
No_of_seqs 295 out of 2462
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 10:56:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 2.4E-37 8.2E-42 312.0 29.3 322 61-390 3-324 (594)
2 3ogk_B Coronatine-insensitive 100.0 9.8E-35 3.4E-39 292.8 24.1 324 65-395 14-392 (592)
3 2ast_B S-phase kinase-associat 99.9 1.4E-26 4.8E-31 216.6 21.2 282 62-383 7-299 (336)
4 2p1m_B Transport inhibitor res 99.8 1.2E-19 4.2E-24 182.5 19.4 217 159-392 281-518 (594)
5 3ogk_B Coronatine-insensitive 99.8 7.2E-19 2.4E-23 176.9 22.5 221 160-395 286-527 (592)
6 1z7x_W Ribonuclease inhibitor; 99.8 4.5E-17 1.5E-21 158.7 21.8 252 121-392 21-296 (461)
7 2ast_B S-phase kinase-associat 99.7 6.7E-17 2.3E-21 150.7 19.6 210 167-395 70-285 (336)
8 1z7x_W Ribonuclease inhibitor; 99.7 1.5E-16 5E-21 155.0 21.1 265 121-411 49-348 (461)
9 2ca6_A RAN GTPase-activating p 99.7 1E-15 3.4E-20 145.6 21.7 252 121-395 25-318 (386)
10 2ca6_A RAN GTPase-activating p 99.7 8.6E-16 3E-20 146.1 19.3 247 124-387 56-337 (386)
11 3goz_A Leucine-rich repeat-con 99.7 4E-16 1.4E-20 147.1 12.7 253 121-391 15-295 (362)
12 3goz_A Leucine-rich repeat-con 99.6 3.2E-14 1.1E-18 134.1 22.4 116 167-283 80-206 (362)
13 3v47_A TOLL-like receptor 5B a 99.5 1.2E-13 4.1E-18 134.2 9.0 96 123-234 74-170 (455)
14 3un9_A NLR family member X1; l 99.4 7.3E-13 2.5E-17 124.7 13.3 176 166-377 71-261 (372)
15 4fmz_A Internalin; leucine ric 99.4 6.8E-12 2.3E-16 117.2 18.0 165 216-411 175-340 (347)
16 4fmz_A Internalin; leucine ric 99.4 4.3E-12 1.5E-16 118.6 16.6 165 216-411 153-318 (347)
17 4fcg_A Uncharacterized protein 99.3 1E-13 3.5E-18 128.6 0.8 224 125-409 78-306 (328)
18 3v47_A TOLL-like receptor 5B a 99.3 4.8E-13 1.6E-17 129.9 4.3 115 123-256 49-164 (455)
19 3un9_A NLR family member X1; l 99.3 2.7E-12 9.1E-17 120.9 8.1 164 190-392 70-251 (372)
20 3t6q_A CD180 antigen; protein- 99.3 5.6E-13 1.9E-17 134.2 0.3 78 328-408 473-551 (606)
21 3e4g_A ATP synthase subunit S, 99.3 3.9E-12 1.3E-16 105.1 5.1 104 167-276 61-170 (176)
22 2z80_A TOLL-like receptor 2, v 99.2 7.5E-12 2.6E-16 117.3 6.9 43 352-395 274-316 (353)
23 3t6q_A CD180 antigen; protein- 99.2 8.7E-13 3E-17 132.8 0.2 64 327-393 496-560 (606)
24 3rgz_A Protein brassinosteroid 99.2 2.1E-13 7.2E-18 141.1 -4.5 223 165-411 124-350 (768)
25 1o6v_A Internalin A; bacterial 99.2 1.4E-10 4.6E-15 113.0 15.6 234 124-410 64-315 (466)
26 2z80_A TOLL-like receptor 2, v 99.2 4.3E-12 1.5E-16 118.9 4.5 225 165-410 74-307 (353)
27 2id5_A Lingo-1, leucine rich r 99.2 2.1E-12 7.2E-17 126.2 2.4 85 165-256 78-162 (477)
28 1ozn_A Reticulon 4 receptor; N 99.2 1.2E-12 4E-17 119.0 0.2 63 329-393 175-238 (285)
29 1h6u_A Internalin H; cell adhe 99.2 3.2E-11 1.1E-15 110.8 9.5 169 165-392 61-229 (308)
30 3zyi_A Leucine-rich repeat-con 99.2 1.6E-12 5.6E-17 126.1 0.1 202 165-391 97-301 (452)
31 1ogq_A PGIP-2, polygalacturona 99.2 2.9E-13 1E-17 124.8 -5.1 243 128-409 50-296 (313)
32 1o6v_A Internalin A; bacterial 99.2 2.3E-10 7.8E-15 111.4 15.1 190 165-392 197-387 (466)
33 3e4g_A ATP synthase subunit S, 99.2 6.2E-11 2.1E-15 97.8 9.0 45 220-269 63-107 (176)
34 3zyj_A Leucine-rich repeat-con 99.2 1.3E-12 4.5E-17 126.3 -1.3 202 165-391 86-290 (440)
35 4fcg_A Uncharacterized protein 99.2 1.4E-12 4.6E-17 121.1 -1.3 201 165-412 79-285 (328)
36 3vq2_A TLR4, TOLL-like recepto 99.2 1.1E-12 3.8E-17 132.1 -2.4 216 165-403 326-543 (606)
37 2z81_A CD282 antigen, TOLL-lik 99.2 2.4E-11 8.2E-16 120.8 7.2 77 328-405 331-411 (549)
38 1xku_A Decorin; proteoglycan, 99.2 7.3E-12 2.5E-16 116.2 3.3 200 165-392 74-275 (330)
39 1wwl_A Monocyte differentiatio 99.2 3E-12 1E-16 117.9 0.5 205 165-391 93-307 (312)
40 2z66_A Variable lymphocyte rec 99.2 4.9E-13 1.7E-17 122.8 -4.9 240 127-405 27-278 (306)
41 3o53_A Protein LRIM1, AGAP0063 99.2 2.5E-12 8.4E-17 118.8 -0.4 237 121-408 27-266 (317)
42 3o53_A Protein LRIM1, AGAP0063 99.2 1.7E-12 5.9E-17 119.8 -2.1 225 121-394 51-276 (317)
43 3o6n_A APL1; leucine-rich repe 99.2 6.5E-12 2.2E-16 119.4 1.9 132 126-283 43-175 (390)
44 2z81_A CD282 antigen, TOLL-lik 99.1 4.2E-10 1.4E-14 111.8 15.0 174 215-395 331-512 (549)
45 3o6n_A APL1; leucine-rich repe 99.1 4.2E-12 1.4E-16 120.7 0.4 202 165-391 115-329 (390)
46 3oja_B Anopheles plasmodium-re 99.1 4.5E-12 1.6E-16 127.3 0.5 66 165-233 121-186 (597)
47 1ogq_A PGIP-2, polygalacturona 99.1 5.7E-13 1.9E-17 122.8 -5.8 235 121-394 69-305 (313)
48 1wwl_A Monocyte differentiatio 99.1 9.4E-13 3.2E-17 121.3 -4.7 203 190-411 93-303 (312)
49 3rgz_A Protein brassinosteroid 99.1 3.8E-12 1.3E-16 131.6 -0.7 35 271-305 416-450 (768)
50 2z66_A Variable lymphocyte rec 99.1 7E-13 2.4E-17 121.7 -5.9 183 165-367 76-260 (306)
51 4ecn_A Leucine-rich repeat pro 99.1 1.4E-11 4.7E-16 127.7 2.8 56 353-410 751-812 (876)
52 2id5_A Lingo-1, leucine rich r 99.1 4.9E-12 1.7E-16 123.5 -0.9 131 165-306 54-185 (477)
53 1io0_A Tropomodulin; LRR prote 99.1 9.5E-10 3.2E-14 92.9 13.3 126 155-283 24-161 (185)
54 3bz5_A Internalin-J, INLJ; leu 99.1 1.2E-10 4.2E-15 112.8 8.5 177 165-386 83-260 (457)
55 4glp_A Monocyte differentiatio 99.1 8.4E-12 2.9E-16 114.8 0.2 206 166-391 90-305 (310)
56 2z7x_B TOLL-like receptor 1, v 99.1 3.2E-10 1.1E-14 111.9 11.3 149 243-409 321-473 (520)
57 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 1.1E-10 3.7E-15 116.5 8.0 16 123-138 71-86 (562)
58 3vq2_A TLR4, TOLL-like recepto 99.1 5.4E-12 1.8E-16 127.0 -1.7 206 165-394 348-559 (606)
59 1ozn_A Reticulon 4 receptor; N 99.1 3.6E-11 1.2E-15 109.0 3.2 198 167-411 32-232 (285)
60 2z63_A TOLL-like receptor 4, v 99.1 7.2E-12 2.5E-16 125.1 -1.8 209 165-395 323-533 (570)
61 4eco_A Uncharacterized protein 99.1 2.6E-11 9E-16 122.6 2.0 246 126-411 247-543 (636)
62 3oja_B Anopheles plasmodium-re 99.1 2.5E-11 8.6E-16 121.9 1.6 110 163-283 71-181 (597)
63 3rfs_A Internalin B, repeat mo 99.1 1.1E-11 3.8E-16 111.7 -1.0 33 352-392 202-234 (272)
64 2z62_A TOLL-like receptor 4, v 99.1 5.6E-12 1.9E-16 113.9 -2.9 204 167-391 28-235 (276)
65 3zyj_A Leucine-rich repeat-con 99.0 8.2E-12 2.8E-16 120.7 -2.7 13 354-366 278-290 (440)
66 4glp_A Monocyte differentiatio 99.0 3.7E-11 1.3E-15 110.5 1.6 224 167-410 64-300 (310)
67 3oja_A Leucine-rich immune mol 99.0 7.8E-12 2.7E-16 122.3 -3.1 229 127-406 33-264 (487)
68 4ecn_A Leucine-rich repeat pro 99.0 1.4E-10 4.7E-15 120.3 5.8 244 126-411 489-783 (876)
69 3zyi_A Leucine-rich repeat-con 99.0 1.2E-11 4E-16 120.0 -2.1 201 167-392 75-278 (452)
70 4ezg_A Putative uncharacterize 99.0 2.1E-10 7.2E-15 98.0 5.8 104 166-283 43-146 (197)
71 1xku_A Decorin; proteoglycan, 99.0 2E-11 6.9E-16 113.2 -1.3 227 123-392 71-305 (330)
72 2z63_A TOLL-like receptor 4, v 99.0 1.2E-11 4E-16 123.6 -3.6 216 168-411 305-525 (570)
73 1h6u_A Internalin H; cell adhe 99.0 1.9E-09 6.3E-14 98.9 11.1 184 165-409 39-222 (308)
74 3oja_A Leucine-rich immune mol 99.0 1.4E-11 4.8E-16 120.5 -3.4 219 121-388 51-270 (487)
75 2z7x_B TOLL-like receptor 1, v 99.0 1.2E-09 3.9E-14 107.9 10.0 160 215-395 321-483 (520)
76 3j0a_A TOLL-like receptor 5; m 99.0 5E-11 1.7E-15 124.5 -0.2 87 165-256 71-158 (844)
77 1ziw_A TOLL-like receptor 3; i 99.0 1.4E-10 4.7E-15 118.4 2.7 110 165-283 71-181 (680)
78 2ft3_A Biglycan; proteoglycan, 99.0 4.6E-11 1.6E-15 110.9 -1.3 199 165-392 76-276 (332)
79 2ra8_A Uncharacterized protein 98.9 6.5E-09 2.2E-13 97.0 13.0 160 210-390 164-340 (362)
80 4ezg_A Putative uncharacterize 98.9 1.1E-09 3.7E-14 93.5 7.1 150 191-391 43-192 (197)
81 4eco_A Uncharacterized protein 98.9 6.2E-11 2.1E-15 119.9 -1.6 198 191-410 248-463 (636)
82 1m9s_A Internalin B; cell inva 98.9 9.3E-10 3.2E-14 110.0 6.6 120 166-305 42-161 (605)
83 1io0_A Tropomodulin; LRR prote 98.9 1.4E-08 5E-13 85.5 12.3 44 213-256 31-75 (185)
84 3bz5_A Internalin-J, INLJ; leu 98.9 1.9E-09 6.5E-14 104.4 7.8 208 123-392 37-245 (457)
85 1h6t_A Internalin B; cell adhe 98.9 3.5E-09 1.2E-13 96.2 9.0 169 165-392 44-212 (291)
86 3j0a_A TOLL-like receptor 5; m 98.9 5.2E-11 1.8E-15 124.4 -3.6 255 126-409 22-319 (844)
87 3g06_A SSPH2 (leucine-rich rep 98.9 1.4E-09 4.8E-14 109.0 6.7 55 166-231 80-134 (622)
88 2ft3_A Biglycan; proteoglycan, 98.9 2E-10 6.9E-15 106.5 0.5 245 123-409 73-325 (332)
89 1ziw_A TOLL-like receptor 3; i 98.9 6.6E-10 2.2E-14 113.4 3.7 246 128-410 25-278 (680)
90 1pgv_A TMD-1, tropomodulin TMD 98.8 3.3E-08 1.1E-12 83.1 12.5 129 154-283 28-167 (197)
91 2o6q_A Variable lymphocyte rec 98.8 2.8E-10 9.6E-15 102.3 -1.2 127 167-305 37-165 (270)
92 3rfs_A Internalin B, repeat mo 98.8 1.4E-09 4.9E-14 97.8 3.0 180 165-395 39-220 (272)
93 3g06_A SSPH2 (leucine-rich rep 98.8 2E-09 6.9E-14 107.8 3.8 187 165-394 99-298 (622)
94 2je0_A Acidic leucine-rich nuc 98.8 9.9E-09 3.4E-13 83.2 6.9 37 352-388 110-148 (149)
95 1h6t_A Internalin B; cell adhe 98.8 8.9E-09 3.1E-13 93.5 7.1 145 124-305 42-186 (291)
96 2je0_A Acidic leucine-rich nuc 98.8 1.8E-09 6E-14 87.7 2.0 13 292-304 135-147 (149)
97 1p9a_G Platelet glycoprotein I 98.8 4E-10 1.4E-14 102.4 -2.0 37 352-390 169-205 (290)
98 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 8E-09 2.7E-13 102.9 6.2 38 165-202 247-286 (562)
99 2ell_A Acidic leucine-rich nuc 98.7 7.7E-09 2.7E-13 85.7 5.1 41 352-392 117-159 (168)
100 2z62_A TOLL-like receptor 4, v 98.7 7.1E-10 2.4E-14 100.0 -1.5 195 192-410 28-230 (276)
101 2o6q_A Variable lymphocyte rec 98.7 5.9E-10 2E-14 100.2 -2.3 37 353-390 179-215 (270)
102 2ra8_A Uncharacterized protein 98.7 1.4E-07 4.8E-12 88.0 12.6 211 75-307 93-317 (362)
103 3m19_A Variable lymphocyte rec 98.6 6.2E-09 2.1E-13 92.4 2.1 83 167-256 35-117 (251)
104 1m9s_A Internalin B; cell inva 98.6 6E-08 2.1E-12 96.9 9.2 170 191-395 42-212 (605)
105 1fs1_A SKP2 F-BOX, cyclin A/CD 98.6 1.4E-08 4.7E-13 66.3 3.0 40 62-106 7-46 (53)
106 1p9a_G Platelet glycoprotein I 98.6 6.6E-09 2.2E-13 94.4 1.1 175 167-368 31-208 (290)
107 1xeu_A Internalin C; cellular 98.6 4.8E-08 1.6E-12 87.3 6.5 55 192-256 41-95 (263)
108 1jl5_A Outer protein YOPM; leu 98.6 6.4E-09 2.2E-13 100.6 0.2 75 165-256 193-267 (454)
109 2ell_A Acidic leucine-rich nuc 98.6 4.9E-09 1.7E-13 86.9 -0.8 14 292-305 142-155 (168)
110 2xwt_C Thyrotropin receptor; s 98.6 1.1E-09 3.6E-14 96.6 -5.5 199 167-392 31-238 (239)
111 3m19_A Variable lymphocyte rec 98.5 1.6E-08 5.6E-13 89.7 0.0 102 193-305 36-139 (251)
112 1xeu_A Internalin C; cellular 98.4 1E-07 3.6E-12 85.1 4.3 120 165-305 39-158 (263)
113 3cvr_A Invasion plasmid antige 98.4 5.7E-08 2E-12 96.1 2.2 190 127-374 58-249 (571)
114 1a9n_A U2A', U2A'; complex (nu 98.4 1.1E-07 3.7E-12 79.4 3.5 59 167-231 19-77 (176)
115 1jl5_A Outer protein YOPM; leu 98.4 3.9E-08 1.3E-12 95.1 0.9 178 167-392 111-289 (454)
116 1pgv_A TMD-1, tropomodulin TMD 98.4 4E-06 1.4E-10 70.3 12.4 123 181-305 30-165 (197)
117 2o6s_A Variable lymphocyte rec 98.4 3.4E-08 1.2E-12 84.8 -0.7 157 192-401 28-186 (208)
118 4g8a_A TOLL-like receptor 4; l 98.3 2E-07 6.9E-12 93.8 3.2 129 167-306 52-182 (635)
119 1ds9_A Outer arm dynein; leuci 98.3 3.2E-07 1.1E-11 78.1 2.6 35 352-386 137-180 (198)
120 3sb4_A Hypothetical leucine ri 98.2 1E-07 3.4E-12 88.1 -1.1 37 191-230 100-136 (329)
121 1ds9_A Outer arm dynein; leuci 98.2 3E-07 1E-11 78.2 2.0 105 165-283 46-150 (198)
122 1dce_A Protein (RAB geranylger 98.2 5.3E-09 1.8E-13 103.8 -10.4 40 352-391 505-544 (567)
123 1a9n_A U2A', U2A'; complex (nu 98.2 1.2E-06 4.2E-11 72.9 5.4 40 352-391 110-151 (176)
124 3cvr_A Invasion plasmid antige 98.2 5.4E-07 1.8E-11 89.2 3.1 111 167-306 59-169 (571)
125 2xot_A Amphoterin-induced prot 98.2 3E-07 1E-11 86.1 0.9 63 167-231 39-101 (361)
126 4g8a_A TOLL-like receptor 4; l 98.1 1.1E-06 3.6E-11 88.5 3.9 154 193-390 53-211 (635)
127 2xwt_C Thyrotropin receptor; s 98.1 1.7E-07 5.8E-12 82.3 -2.0 180 192-397 31-221 (239)
128 3e6j_A Variable lymphocyte rec 98.1 1.3E-06 4.3E-11 76.2 3.5 103 192-305 40-143 (229)
129 3e6j_A Variable lymphocyte rec 98.0 4.2E-07 1.4E-11 79.3 -1.0 128 167-306 40-168 (229)
130 2o6s_A Variable lymphocyte rec 98.0 3.4E-07 1.2E-11 78.5 -2.0 16 216-231 74-89 (208)
131 2v70_A SLIT-2, SLIT homolog 2 98.0 3.8E-07 1.3E-11 79.0 -2.8 128 167-305 32-161 (220)
132 2v70_A SLIT-2, SLIT homolog 2 98.0 1.8E-06 6.1E-11 74.7 1.5 121 170-305 14-137 (220)
133 2v9t_B SLIT homolog 2 protein 97.9 4.4E-07 1.5E-11 78.7 -2.9 59 192-256 56-114 (220)
134 4ay9_X Follicle-stimulating ho 97.9 1.1E-07 3.8E-12 88.7 -7.7 40 353-396 200-239 (350)
135 2xot_A Amphoterin-induced prot 97.9 6.8E-07 2.3E-11 83.7 -2.3 104 193-305 40-144 (361)
136 2e31_A FBS1, F-box only protei 97.8 4.4E-06 1.5E-10 74.5 1.7 38 63-105 50-88 (297)
137 2v9t_B SLIT homolog 2 protein 97.8 3.6E-06 1.2E-10 72.8 0.7 103 192-305 32-136 (220)
138 3sb4_A Hypothetical leucine ri 97.8 1.9E-05 6.3E-10 72.8 5.5 84 166-256 24-134 (329)
139 3l2o_B F-box only protein 4; s 97.8 5.3E-06 1.8E-10 73.1 1.1 40 62-106 3-42 (312)
140 1dce_A Protein (RAB geranylger 97.7 2E-05 6.7E-10 78.2 3.6 124 167-304 441-567 (567)
141 2wfh_A SLIT homolog 2 protein 97.5 2.2E-05 7.4E-10 66.3 0.9 105 167-283 31-136 (193)
142 2o6r_A Variable lymphocyte rec 97.5 1.4E-05 4.7E-10 66.4 -0.4 83 167-256 28-110 (177)
143 1w8a_A SLIT protein; signaling 97.5 7.3E-06 2.5E-10 69.2 -2.2 108 167-283 29-136 (192)
144 1p22_A F-BOX/WD-repeat protein 97.4 4.9E-05 1.7E-09 72.6 2.3 45 59-104 6-50 (435)
145 4b8c_D Glucose-repressible alc 97.4 1.3E-05 4.4E-10 82.0 -1.9 108 243-369 221-330 (727)
146 1w8a_A SLIT protein; signaling 97.3 1.6E-05 5.5E-10 67.0 -1.9 124 170-306 11-135 (192)
147 2wfh_A SLIT homolog 2 protein 97.3 3.9E-05 1.3E-09 64.8 0.5 103 192-306 31-135 (193)
148 4b8c_D Glucose-repressible alc 97.3 2.4E-05 8.2E-10 80.0 -1.2 82 165-256 222-303 (727)
149 3rw6_A Nuclear RNA export fact 97.3 0.00096 3.3E-08 58.9 9.3 69 184-257 162-231 (267)
150 3v7d_B Cell division control p 97.2 6.7E-05 2.3E-09 72.1 1.3 41 60-105 11-51 (464)
151 4ay9_X Follicle-stimulating ho 97.1 6.7E-06 2.3E-10 76.5 -7.2 183 192-397 30-218 (350)
152 2ovr_B FBW7, F-BOX/WD repeat p 97.1 0.00019 6.7E-09 68.5 2.5 40 60-104 15-54 (445)
153 2o6r_A Variable lymphocyte rec 97.0 0.00029 9.9E-09 58.2 3.0 109 127-257 27-135 (177)
154 3g39_A Variable lymphocyte rec 96.9 0.0002 6.9E-09 58.9 0.7 37 216-256 52-88 (170)
155 3rw6_A Nuclear RNA export fact 96.9 0.00056 1.9E-08 60.5 3.5 72 158-232 161-234 (267)
156 2r9u_A Variable lymphocyte rec 96.8 0.0003 1E-08 58.1 0.8 15 217-231 56-70 (174)
157 4fdw_A Leucine rich hypothetic 96.7 0.00064 2.2E-08 64.2 2.5 11 353-363 321-331 (401)
158 4fdw_A Leucine rich hypothetic 96.6 0.00011 3.7E-09 69.5 -3.6 188 165-389 178-379 (401)
159 2r9u_A Variable lymphocyte rec 96.0 0.0022 7.6E-08 52.8 1.8 84 167-257 33-116 (174)
160 3g39_A Variable lymphocyte rec 95.9 0.0021 7.2E-08 52.7 1.3 84 167-257 30-113 (170)
161 2ifg_A High affinity nerve gro 95.0 0.0047 1.6E-07 56.8 0.4 85 165-257 29-114 (347)
162 2ifg_A High affinity nerve gro 92.9 0.019 6.6E-07 52.7 0.0 83 191-283 30-113 (347)
163 4fs7_A Uncharacterized protein 92.0 0.077 2.6E-06 49.6 3.0 56 326-389 315-375 (394)
164 4gt6_A Cell surface protein; l 89.2 0.44 1.5E-05 44.4 5.5 120 244-388 263-386 (394)
165 4gt6_A Cell surface protein; l 85.5 0.56 1.9E-05 43.7 3.8 100 270-390 262-367 (394)
166 4fs7_A Uncharacterized protein 84.5 1.1 3.7E-05 41.7 5.2 158 192-385 230-393 (394)
167 4h09_A Hypothetical leucine ri 68.2 1.4 4.7E-05 40.6 0.8 123 165-305 215-341 (379)
168 3rfe_A Platelet glycoprotein I 64.3 6 0.00021 30.1 3.7 14 219-232 32-45 (130)
169 4h09_A Hypothetical leucine ri 59.4 2.5 8.5E-05 38.8 0.8 124 215-365 214-343 (379)
170 3rfe_A Platelet glycoprotein I 44.8 8.1 0.00028 29.3 1.4 34 355-389 31-64 (130)
171 2kwv_A RAD30 homolog B, DNA po 22.3 62 0.0021 19.3 2.2 19 61-83 18-36 (48)
172 2lz0_A Uncharacterized protein 21.5 47 0.0016 23.7 2.1 35 326-364 15-52 (100)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=2.4e-37 Score=311.97 Aligned_cols=322 Identities=48% Similarity=0.855 Sum_probs=264.6
Q ss_pred ccccCCCCcchHHHHHHHHHhhcCCcchhhHHHHHhHHHHHhhcCCCCeEEecccccCChhHHHhcCCCccEEEecCCCC
Q 044749 61 TEYQSQYPDQVLEIVLENVLQFLTSRRDRNAASLVCKSWWRAEALTRSELFIGNCYAVSPDRARGRFRRVRSVVLKGKPR 140 (413)
Q Consensus 61 ~d~~~~LP~e~~~~il~~Ifs~L~~~~d~~~~~~vcr~W~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~l~l~~~~~ 140 (413)
.|.++.|||| ||.+||+||++.+|+.++++|||+|+++..+.+..+.+.+++...+..+..+|++++.+++++++.
T Consensus 3 ~d~~~~LPde----vL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 78 (594)
T 2p1m_B 3 KRIALSFPEE----VLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPH 78 (594)
T ss_dssp -------CHH----HHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCG
T ss_pred ccchhhCCHH----HHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCc
Confidence 3778899999 999999999559999999999999999987888889998888888888999999999999999999
Q ss_pred CcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcC
Q 044749 141 FADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQL 220 (413)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L 220 (413)
..++.+.+..|++...+|+..+...+++|++|+|+++.+++..+..++..+++|++|+|.+|..++..++..+..+|++|
T Consensus 79 ~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L 158 (594)
T 2p1m_B 79 FADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158 (594)
T ss_dssp GGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTC
T ss_pred hhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCC
Confidence 98999999999999999999999999999999999999999999999988999999999999888888899999899999
Q ss_pred cEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCc
Q 044749 221 RVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLT 300 (413)
Q Consensus 221 ~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~ 300 (413)
++|+|++|.+++.+..++..+...+++|++|++.++...++...+..+...+++|++|++++|....++..++..+++|+
T Consensus 159 ~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 238 (594)
T 2p1m_B 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLE 238 (594)
T ss_dssp CEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCS
T ss_pred CEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcce
Confidence 99999999999988888998988999999999999865688899999988899999999999977888888999999999
Q ss_pred eecccCcCCCcccccCCCChhhHHHHHhhCCCcccccCCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCC
Q 044749 301 HLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLSGFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCH 380 (413)
Q Consensus 301 ~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~ 380 (413)
+|+++.+...... .....+...+..|++|+.|+++..+++..++.+...+++|++|+|++|.+++.++..++..|+
T Consensus 239 ~L~l~~~~~~~~~----~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~ 314 (594)
T 2p1m_B 239 ELGTGGYTAEVRP----DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314 (594)
T ss_dssp EEECSBCCCCCCH----HHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCT
T ss_pred EcccccccCccch----hhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCC
Confidence 9998754321100 012233344566677776654445555566666556667777777766666666666666666
Q ss_pred CCCEEEeecc
Q 044749 381 KLQIFGPSIQ 390 (413)
Q Consensus 381 ~L~~L~l~~c 390 (413)
+|++|++.+|
T Consensus 315 ~L~~L~l~~~ 324 (594)
T 2p1m_B 315 KLQRLWVLDY 324 (594)
T ss_dssp TCCEEEEEGG
T ss_pred CcCEEeCcCc
Confidence 6666666666
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=9.8e-35 Score=292.77 Aligned_cols=324 Identities=28% Similarity=0.487 Sum_probs=257.5
Q ss_pred CCCCcchHHHHHHHHHhhcCCcchhhHHHHHhHHHHHhhcCCCCeEEecccccCChhHHHhcCCCccEEEecCCCCCccc
Q 044749 65 SQYPDQVLEIVLENVLQFLTSRRDRNAASLVCKSWWRAEALTRSELFIGNCYAVSPDRARGRFRRVRSVVLKGKPRFADF 144 (413)
Q Consensus 65 ~~LP~e~~~~il~~Ifs~L~~~~d~~~~~~vcr~W~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~l~l~~~~~~~~~ 144 (413)
+.|||| +|.+||+||++.+|++++++|||+|+++..+.+..+.+.+++...+..+..+++++++|++++++...++
T Consensus 14 ~~LPde----il~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 89 (592)
T 3ogk_B 14 VATVDD----VIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMF 89 (592)
T ss_dssp CCCGGG----THHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGG
T ss_pred CCCCHH----HHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhc
Confidence 479999 9999999995599999999999999999988888999888888888999999999999999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCC-CcEEEeCCCCCCChHHHHHHHHhCCcCcEE
Q 044749 145 NLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSG-FKELTLVCCEGFGTCGLAFIASKCRQLRVL 223 (413)
Q Consensus 145 ~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~-L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L 223 (413)
++++..|+++..+|+..+...+++|++|+|+++.+++..+..++..+++ |++|+|++|.+++..++..+..+|++|++|
T Consensus 90 ~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L 169 (592)
T 3ogk_B 90 NLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169 (592)
T ss_dssp TCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEE
T ss_pred ccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEE
Confidence 9999999999999999999999999999999999999999999887787 999999999778888888888999999999
Q ss_pred EccccccccccchhhhccCccCCCcceEEeccccCC-CCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCcee
Q 044749 224 DLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCA-INFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHL 302 (413)
Q Consensus 224 ~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L 302 (413)
+|++|.+++.+.+|+..+...+++|++|++.++... ++...+..+...+++|++|++++|. +.++...+..+++|++|
T Consensus 170 ~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L 248 (592)
T 3ogk_B 170 LMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEF 248 (592)
T ss_dssp ECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEE
T ss_pred ECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhh
Confidence 999999999888888888888999999999988633 5688888888899999999999963 44566778888999999
Q ss_pred cccCcCCCccc----c----------------------------------cC---CCChhhHHHHHhhCCCccccc-CCc
Q 044749 303 GTGKYGPSEVA----Q----------------------------------RQ---GDTEPDYIAAFAACKSLVCLS-GFR 340 (413)
Q Consensus 303 ~l~~~~~~~~~----~----------------------------------~~---g~~~~~~~~~~~~~~~L~~L~-~~~ 340 (413)
+++.+...... . .. ...+..+...+..+++|+.|. . .
T Consensus 249 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~ 327 (592)
T 3ogk_B 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-N 327 (592)
T ss_dssp EECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-G
T ss_pred cccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-C
Confidence 88743221000 0 00 011222333345555555555 3 3
Q ss_pred ccChhhHhhHhhcCCCCCEEEeec----------cc-CChhhHHHHHhcCCCCCEEEeecccccCC
Q 044749 341 EITPDYLSAIYPVCANLTSLNFSY----------AT-ITADQLKPVICNCHKLQIFGPSIQYVMKD 395 (413)
Q Consensus 341 ~i~~~~l~~l~~~~~~L~~L~Ls~----------~~-it~~~l~~l~~~~~~L~~L~l~~c~~i~d 395 (413)
.+++..+..+...|++|++|+|+. |. +++.++..+...|++|++|++ +|..+++
T Consensus 328 ~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~ 392 (592)
T 3ogk_B 328 VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITN 392 (592)
T ss_dssp GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCH
T ss_pred ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccH
Confidence 445555555555666666666663 43 666666666666666666666 4555544
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.95 E-value=1.4e-26 Score=216.58 Aligned_cols=282 Identities=18% Similarity=0.161 Sum_probs=209.6
Q ss_pred cccCCCCcchHHHHHHHHHhhcCCcchhhHHHHHhHHHHHhhcCC--CCeEEecccccCChhHHHhcC--CCccEEEecC
Q 044749 62 EYQSQYPDQVLEIVLENVLQFLTSRRDRNAASLVCKSWWRAEALT--RSELFIGNCYAVSPDRARGRF--RRVRSVVLKG 137 (413)
Q Consensus 62 d~~~~LP~e~~~~il~~Ifs~L~~~~d~~~~~~vcr~W~~~~~~~--~~~l~~~~~~~~~~~~l~~~~--~~l~~l~l~~ 137 (413)
..++.||+| +|.+||+|| +.+|+.+++.|||+|+.+.... +..+.+.... .. .....++ ++++.+++.+
T Consensus 7 ~~~~~LP~e----il~~If~~L-~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~-~~-~~~~~~~~~~~l~~L~l~~ 79 (336)
T 2ast_B 7 VSWDSLPDE----LLLGIFSCL-CLPELLKVSGVCKRWYRLASDESLWQTLDLTGKN-LH-PDVTGRLLSQGVIAFRCPR 79 (336)
T ss_dssp CCSSSSCHH----HHHHHHTTS-CHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCB-CC-HHHHHHHHHTTCSEEECTT
T ss_pred CChhhCCHH----HHHHHHHhC-CHHHHHHHHHHHHHHHHHhcCchhheeecccccc-CC-HHHHHhhhhccceEEEcCC
Confidence 346789999 999999999 5999999999999999997533 4445443321 12 3344444 7889988876
Q ss_pred CCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhC
Q 044749 138 KPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKC 217 (413)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~ 217 (413)
+.-... .+. ...+++|++|+++++.+++..+..+...+++|++|+|++| .+++.....+ ..+
T Consensus 80 n~l~~~---~~~-------------~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l-~~~ 141 (336)
T 2ast_B 80 SFMDQP---LAE-------------HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTL-AKN 141 (336)
T ss_dssp CEECSC---CCS-------------CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHH-TTC
T ss_pred cccccc---chh-------------hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHH-hcC
Confidence 421110 000 0156899999999999998878888888899999999999 7877665554 459
Q ss_pred CcCcEEEcccc-ccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCC-CCcEEEccccc-Ch--HHHHHH
Q 044749 218 RQLRVLDLIET-EVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSP-FLRKLRLNRHV-SI--RQLYRL 292 (413)
Q Consensus 218 ~~L~~L~L~~~-~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~-~L~~L~l~~~~-~~--~~l~~l 292 (413)
++|++|++++| .+++.+ +..+...+++|++|++++|. .++..++......++ +|++|++++|. .+ ..+...
T Consensus 142 ~~L~~L~L~~~~~l~~~~---l~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~ 217 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFA---LQTLLSSCSRLDELNLSWCF-DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL 217 (336)
T ss_dssp TTCSEEECTTCBSCCHHH---HHHHHHHCTTCCEEECCCCT-TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred CCCCEEECCCCCCCCHHH---HHHHHhcCCCCCEEcCCCCC-CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH
Confidence 99999999999 587765 44444466799999999994 477777777777899 99999999873 22 566778
Q ss_pred HhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc--CCcccChhhHhhHhhcCCCCCEEEeecccCChh
Q 044749 293 MVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS--GFREITPDYLSAIYPVCANLTSLNFSYATITAD 370 (413)
Q Consensus 293 l~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~--~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~ 370 (413)
+..+++|++|+++..... .......+..+++|+.|. ++..+++..+..+ ..+++|++|+|++| ++++
T Consensus 218 ~~~~~~L~~L~l~~~~~l---------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~-i~~~ 286 (336)
T 2ast_B 218 VRRCPNLVHLDLSDSVML---------KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI-VPDG 286 (336)
T ss_dssp HHHCTTCSEEECTTCTTC---------CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS-SCTT
T ss_pred HhhCCCCCEEeCCCCCcC---------CHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCEEeccCc-cCHH
Confidence 888999999999843211 112222446678899988 6657777777666 46899999999999 9888
Q ss_pred hHHHHHhcCCCCC
Q 044749 371 QLKPVICNCHKLQ 383 (413)
Q Consensus 371 ~l~~l~~~~~~L~ 383 (413)
++..+...+++|+
T Consensus 287 ~~~~l~~~l~~L~ 299 (336)
T 2ast_B 287 TLQLLKEALPHLQ 299 (336)
T ss_dssp CHHHHHHHSTTSE
T ss_pred HHHHHHhhCcceE
Confidence 8888876677766
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=1.2e-19 Score=182.53 Aligned_cols=217 Identities=18% Similarity=0.198 Sum_probs=166.8
Q ss_pred HHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccc---------cc
Q 044749 159 VCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIE---------TE 229 (413)
Q Consensus 159 l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~---------~~ 229 (413)
+..+...+++|++|+++++.+++..+..+...+++|+.|.+.+| +++.++..++..|++|++|++.+ +.
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCC
Confidence 33334467888888988888888888887878888999999887 56677777888889999998833 34
Q ss_pred cccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcc-----cccCh------HHHHHHHhcCCC
Q 044749 230 VTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLN-----RHVSI------RQLYRLMVRAPQ 298 (413)
Q Consensus 230 i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~-----~~~~~------~~l~~ll~~~p~ 298 (413)
+++.+ +..+...|++|+.|.+.++ .++..++..+...+++|++|+++ +|..+ .++..++..+++
T Consensus 359 l~~~~---l~~l~~~~~~L~~L~~~~~--~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 433 (594)
T 2p1m_B 359 LTEQG---LVSVSMGCPKLESVLYFCR--QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433 (594)
T ss_dssp CCHHH---HHHHHHHCTTCCEEEEEES--CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT
T ss_pred CCHHH---HHHHHHhchhHHHHHHhcC--CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC
Confidence 66666 5555556779999966555 47788888888778999999998 34333 356777888999
Q ss_pred CceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHh
Q 044749 299 LTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVIC 377 (413)
Q Consensus 299 L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~ 377 (413)
|++|++++ . ..+..+......+++|+.|. +...+++.++..+...|++|+.|+|++|.+++.++..++.
T Consensus 434 L~~L~L~~-~---------l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~ 503 (594)
T 2p1m_B 434 LRRLSLSG-L---------LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANAS 503 (594)
T ss_dssp CCEEECCS-S---------CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGG
T ss_pred ccEEeecC-c---------ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHH
Confidence 99999863 1 23555555556688899988 4447888888888778999999999999998888888888
Q ss_pred cCCCCCEEEeecccc
Q 044749 378 NCHKLQIFGPSIQYV 392 (413)
Q Consensus 378 ~~~~L~~L~l~~c~~ 392 (413)
.+++|+.|+|++|+.
T Consensus 504 ~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 504 KLETMRSLWMSSCSV 518 (594)
T ss_dssp GGGGSSEEEEESSCC
T ss_pred hCCCCCEEeeeCCCC
Confidence 889999999999976
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=7.2e-19 Score=176.87 Aligned_cols=221 Identities=16% Similarity=0.138 Sum_probs=181.6
Q ss_pred HHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccc-----------c
Q 044749 160 CVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIE-----------T 228 (413)
Q Consensus 160 ~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~-----------~ 228 (413)
..+...+++|++|+++++.+++..+..+...+++|+.|++.. .+++.++..+...|++|++|++.+ +
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~ 363 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363 (592)
T ss_dssp GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccC
Confidence 344457889999999999999999888888889999999983 577788888889999999999994 4
Q ss_pred ccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEccc---ccChH------HHHHHHhcCCCC
Q 044749 229 EVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNR---HVSIR------QLYRLMVRAPQL 299 (413)
Q Consensus 229 ~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~---~~~~~------~l~~ll~~~p~L 299 (413)
.+++.+ +..+...|++|++|++.++ .++..++..+...+++|++|+++. |..++ ++..++..+++|
T Consensus 364 ~~~~~~---~~~l~~~~~~L~~L~l~~~--~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 364 LVSQRG---LIALAQGCQELEYMAVYVS--DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438 (592)
T ss_dssp CCCHHH---HHHHHHHCTTCSEEEEEES--CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred ccCHHH---HHHHHhhCccCeEEEeecC--CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence 577776 5555567889999999554 488899998888899999999973 32222 577778889999
Q ss_pred ceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhc
Q 044749 300 THLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICN 378 (413)
Q Consensus 300 ~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~ 378 (413)
++|+++. +.+. ..+..+......+++|+.|. +...+++..+..+...|++|++|+|++|.+++.++..++..
T Consensus 439 ~~L~L~~-~~~~------l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 439 RRFAFYL-RQGG------LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp CEEEEEC-CGGG------CCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred CEEEEec-CCCC------ccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 9999963 2211 24556666677799999999 66689999999998999999999999999999999999999
Q ss_pred CCCCCEEEeecccccCC
Q 044749 379 CHKLQIFGPSIQYVMKD 395 (413)
Q Consensus 379 ~~~L~~L~l~~c~~i~d 395 (413)
+++|+.|+|++|. +++
T Consensus 512 l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 512 LPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp CSSCCEEEEESCB-CCT
T ss_pred cCccCeeECcCCc-CCH
Confidence 9999999999998 554
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=4.5e-17 Score=158.66 Aligned_cols=252 Identities=16% Similarity=0.165 Sum_probs=179.4
Q ss_pred hHHHhcCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCC----CCcE
Q 044749 121 DRARGRFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFS----GFKE 196 (413)
Q Consensus 121 ~~l~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~----~L~~ 196 (413)
..+...+++++.|+++++.- .+ .....+......+++|++|+++++.+++.++..+...++ +|++
T Consensus 21 ~~~~~~~~~L~~L~L~~~~l-~~----------~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~ 89 (461)
T 1z7x_W 21 AELLPLLQQCQVVRLDDCGL-TE----------ARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK 89 (461)
T ss_dssp HHHHHHHTTCSEEEEESSCC-CH----------HHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCE
T ss_pred HHHHhhcCCccEEEccCCCC-CH----------HHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeE
Confidence 44577889999999987641 11 011123334456899999999999999988888888777 6999
Q ss_pred EEeCCCCCCChHH---HHHHHHhCCcCcEEEccccccccccchhhhc-cCccCCCcceEEeccccCCCCHH---HHHHHH
Q 044749 197 LTLVCCEGFGTCG---LAFIASKCRQLRVLDLIETEVTDDEVDWISL-FPEGETCLESLIFDCVDCAINFE---ALEKLV 269 (413)
Q Consensus 197 L~L~~c~~~~~~~---l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~-l~~~~~~L~~L~L~~~~~~~~~~---~l~~l~ 269 (413)
|+|++| .+++.+ +......+++|++|++++|.+++.++..+.. +....++|++|++++|. ++.. .+....
T Consensus 90 L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l 166 (461)
T 1z7x_W 90 LSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS--LSAASCEPLASVL 166 (461)
T ss_dssp EECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC--CBGGGHHHHHHHH
T ss_pred EEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC--CCHHHHHHHHHHH
Confidence 999999 788755 3444567899999999999998877444433 23345689999999985 4433 344445
Q ss_pred HhCCCCcEEEcccccChH-HHHHH---Hh-cCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccC
Q 044749 270 ARSPFLRKLRLNRHVSIR-QLYRL---MV-RAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREIT 343 (413)
Q Consensus 270 ~~~~~L~~L~l~~~~~~~-~l~~l---l~-~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~ 343 (413)
..+++|++|+++++.-.. +...+ +. ..++|++|+++...... .....+...+..+++|+.|. +...++
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~------~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS------DNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT------THHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH------HHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 568999999999874222 22222 22 46799999998543221 11224566777899999998 444787
Q ss_pred hhhHhhHhh----cCCCCCEEEeecccCChhhH---HHHHhcCCCCCEEEeecccc
Q 044749 344 PDYLSAIYP----VCANLTSLNFSYATITADQL---KPVICNCHKLQIFGPSIQYV 392 (413)
Q Consensus 344 ~~~l~~l~~----~~~~L~~L~Ls~~~it~~~l---~~l~~~~~~L~~L~l~~c~~ 392 (413)
+.++..+.. .+++|++|+|++|.+++.++ ...+..+++|++|+++++..
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 777665543 47899999999999998874 44456799999999999853
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=6.7e-17 Score=150.73 Aligned_cols=210 Identities=17% Similarity=0.142 Sum_probs=165.9
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGET 246 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~ 246 (413)
++++.|+++++.++..... ...+++|++|+|++| .++..++..+...|++|++|++++|.+++.....+. .++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~----~~~ 142 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA----KNS 142 (336)
T ss_dssp TTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT----TCT
T ss_pred ccceEEEcCCccccccchh--hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh----cCC
Confidence 7889999988765432111 123578999999999 688877888889999999999999998877644343 367
Q ss_pred CcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChH--HHHHHHhcCC-CCceecccCcCCCcccccCCCChhhH
Q 044749 247 CLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIR--QLYRLMVRAP-QLTHLGTGKYGPSEVAQRQGDTEPDY 323 (413)
Q Consensus 247 ~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~--~l~~ll~~~p-~L~~L~l~~~~~~~~~~~~g~~~~~~ 323 (413)
+|++|++++|. .+++.++..+...+++|++|++++|..++ ++...+..++ +|++|++++.... ..+..+
T Consensus 143 ~L~~L~L~~~~-~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~-------~~~~~l 214 (336)
T 2ast_B 143 NLVRLNLSGCS-GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN-------LQKSDL 214 (336)
T ss_dssp TCSEEECTTCB-SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG-------SCHHHH
T ss_pred CCCEEECCCCC-CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc-------CCHHHH
Confidence 99999999995 58887788878889999999999983444 4678888999 9999999843211 234667
Q ss_pred HHHHhhCCCccccc--CCcccChhhHhhHhhcCCCCCEEEeeccc-CChhhHHHHHhcCCCCCEEEeecccccCC
Q 044749 324 IAAFAACKSLVCLS--GFREITPDYLSAIYPVCANLTSLNFSYAT-ITADQLKPVICNCHKLQIFGPSIQYVMKD 395 (413)
Q Consensus 324 ~~~~~~~~~L~~L~--~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~-it~~~l~~l~~~~~~L~~L~l~~c~~i~d 395 (413)
...+..+++|+.|. ++..+++..+..+ ..+++|++|+|++|. +++.++..+ ..+++|+.|++.+| +++
T Consensus 215 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~--i~~ 285 (336)
T 2ast_B 215 STLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI--VPD 285 (336)
T ss_dssp HHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS--SCT
T ss_pred HHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCEEeccCc--cCH
Confidence 77888899999998 5544777777776 567999999999996 888877544 67999999999999 655
No 8
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=1.5e-16 Score=154.98 Aligned_cols=265 Identities=14% Similarity=0.119 Sum_probs=188.9
Q ss_pred hHHHhcCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCC----CCcEEeeeCCccCHHHHHHHHH---hCCC
Q 044749 121 DRARGRFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYP----WLEKVYLKRMSITDDDLALLAE---SFSG 193 (413)
Q Consensus 121 ~~l~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~----~L~~L~L~~~~l~~~~l~~l~~---~~~~ 193 (413)
......+++++.|+++++. .....+..+...++ +|++|+++++.+++.++..+.. .+++
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~--------------l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 114 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNE--------------LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT 114 (461)
T ss_dssp HHHHHTCTTCCEEECTTCC--------------CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTT
T ss_pred HHHHHhCCCcCEEeCCCCc--------------CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCc
Confidence 4556678999999998643 12334455655666 7999999999998766555443 4578
Q ss_pred CcEEEeCCCCCCChHHHHHHHHh----CCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHH
Q 044749 194 FKELTLVCCEGFGTCGLAFIASK----CRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLV 269 (413)
Q Consensus 194 L~~L~L~~c~~~~~~~l~~~~~~----~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~ 269 (413)
|++|+|++| .+++.++..+... .++|++|++++|.+++.+...+......+++|++|+++++. +++.++..+.
T Consensus 115 L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~ 191 (461)
T 1z7x_W 115 LQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND--INEAGVRVLC 191 (461)
T ss_dssp CCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB--CHHHHHHHHH
T ss_pred eeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC--cchHHHHHHH
Confidence 999999999 6887777666553 45799999999999987755555554567799999999986 6666665554
Q ss_pred H----hCCCCcEEEcccccCh----HHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHH----hhCCCccccc
Q 044749 270 A----RSPFLRKLRLNRHVSI----RQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAF----AACKSLVCLS 337 (413)
Q Consensus 270 ~----~~~~L~~L~l~~~~~~----~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~----~~~~~L~~L~ 337 (413)
. ..++|++|++++|.-. ..+...+..+++|++|+++.... .+..+.... ..+++|+.|.
T Consensus 192 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l---------~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL---------GDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC---------HHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC---------ChHHHHHHHHHHhcCCCCceEEE
Confidence 4 3569999999998321 13667778899999999984321 122332222 2478899998
Q ss_pred -CCcccChhhHhhH---hhcCCCCCEEEeecccCChhhHHHHHhc----CCCCCEEEeecccccCC----Cchhhhhccc
Q 044749 338 -GFREITPDYLSAI---YPVCANLTSLNFSYATITADQLKPVICN----CHKLQIFGPSIQYVMKD----FRPWLQRAKN 405 (413)
Q Consensus 338 -~~~~i~~~~l~~l---~~~~~~L~~L~Ls~~~it~~~l~~l~~~----~~~L~~L~l~~c~~i~d----~~~~~~~~~~ 405 (413)
....+++.+...+ ...+++|++|+|++|.+++.++..+... .++|+.|++++|..-.. +..++...++
T Consensus 263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 342 (461)
T 1z7x_W 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred CcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCC
Confidence 4447888764444 3458999999999999988877666543 36999999999974332 2445555566
Q ss_pred cccccc
Q 044749 406 FVNFGF 411 (413)
Q Consensus 406 ~~~~~~ 411 (413)
+..+.+
T Consensus 343 L~~L~L 348 (461)
T 1z7x_W 343 LLELQI 348 (461)
T ss_dssp CCEEEC
T ss_pred ccEEEc
Confidence 665544
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=1e-15 Score=145.63 Aligned_cols=252 Identities=15% Similarity=0.090 Sum_probs=170.1
Q ss_pred hHHHhcCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHH---HhhCCCCcEEeeeCCccC------HHHHHHHHH--
Q 044749 121 DRARGRFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVL---ANAYPWLEKVYLKRMSIT------DDDLALLAE-- 189 (413)
Q Consensus 121 ~~l~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l---~~~~~~L~~L~L~~~~l~------~~~l~~l~~-- 189 (413)
......+++++.|+++++. + .......+ ...+++|+.|+|+++.+. ..++..++.
T Consensus 25 ~~~l~~~~~L~~L~L~~n~-i-------------~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNT-I-------------GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp SHHHHHCSCCCEEECTTSE-E-------------CHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred HHHHhcCCCccEEECCCCC-C-------------CHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 4566778899999998752 1 12222333 336889999999887433 345544443
Q ss_pred -hCCCCcEEEeCCCCCCChHH---HHHHHHhCCcCcEEEccccccccccchhhhccCccC---------CCcceEEeccc
Q 044749 190 -SFSGFKELTLVCCEGFGTCG---LAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGE---------TCLESLIFDCV 256 (413)
Q Consensus 190 -~~~~L~~L~L~~c~~~~~~~---l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~---------~~L~~L~L~~~ 256 (413)
.+++|++|+|++| .++..+ +......+++|++|+|++|.+++.++..+......+ ++|++|+++++
T Consensus 91 ~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 91 LKCPKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp TTCTTCCEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred hhCCcccEEECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 4578999999998 777654 344456799999999999998876644444332233 69999999988
Q ss_pred cCCCCHHHHH---HHHHhCCCCcEEEccccc-ChHH---HHH-HHhcCCCCceecccCcCCCcccccCCCChhhHHHHHh
Q 044749 257 DCAINFEALE---KLVARSPFLRKLRLNRHV-SIRQ---LYR-LMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFA 328 (413)
Q Consensus 257 ~~~~~~~~l~---~l~~~~~~L~~L~l~~~~-~~~~---l~~-ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~ 328 (413)
. ++..++. .....+++|++|++++|. ...+ +.. .+..+++|+.|+++...... .....+...+.
T Consensus 170 ~--l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~------~g~~~l~~~l~ 241 (386)
T 2ca6_A 170 R--LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH------LGSSALAIALK 241 (386)
T ss_dssp C--CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH------HHHHHHHHHGG
T ss_pred C--CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc------HHHHHHHHHHc
Confidence 5 4433333 344468999999999873 2223 333 45578999999998432110 00134455667
Q ss_pred hCCCccccc-CCcccChhhHhhHhhc-----CCCCCEEEeecccCChhhHHHH---H-hcCCCCCEEEeecccccCC
Q 044749 329 ACKSLVCLS-GFREITPDYLSAIYPV-----CANLTSLNFSYATITADQLKPV---I-CNCHKLQIFGPSIQYVMKD 395 (413)
Q Consensus 329 ~~~~L~~L~-~~~~i~~~~l~~l~~~-----~~~L~~L~Ls~~~it~~~l~~l---~-~~~~~L~~L~l~~c~~i~d 395 (413)
.+++|+.|. +.+.+++.+...+... +++|++|+|++|.+++.++..+ + .++++|++|++++|..-.+
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 788999988 4447877765554432 7899999999999988654433 3 5689999999999875443
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.69 E-value=8.6e-16 Score=146.10 Aligned_cols=247 Identities=15% Similarity=0.073 Sum_probs=141.4
Q ss_pred HhcCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHH---hhCCCCcEEeeeCCccCHHHHHH---HHHhCCCCcEE
Q 044749 124 RGRFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLA---NAYPWLEKVYLKRMSITDDDLAL---LAESFSGFKEL 197 (413)
Q Consensus 124 ~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~---~~~~~L~~L~L~~~~l~~~~l~~---l~~~~~~L~~L 197 (413)
+..+++++.|+++++..-. .......++..+. ..+++|+.|+|+++.+++.+... ....+++|+.|
T Consensus 56 l~~~~~L~~L~Ls~~~~~~--------l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L 127 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGR--------VKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 127 (386)
T ss_dssp TTTCTTCCEEECCSCCTTS--------CGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEE
T ss_pred HHhCCCccEEeCcccccCc--------cccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEE
Confidence 3456777777777542110 1112223343332 35677888888887776643332 22445778888
Q ss_pred EeCCCCCCChHHHHHHH---HhC---------CcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHH
Q 044749 198 TLVCCEGFGTCGLAFIA---SKC---------RQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEAL 265 (413)
Q Consensus 198 ~L~~c~~~~~~~l~~~~---~~~---------~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l 265 (413)
+|++| .++..+...+. ..+ ++|++|+|++|.+++.+...+......+++|+.|+++++. +++.++
T Consensus 128 ~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~--l~~~g~ 204 (386)
T 2ca6_A 128 YLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG--IRPEGI 204 (386)
T ss_dssp ECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC--CCHHHH
T ss_pred ECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC--CCHhHH
Confidence 88877 66644433322 233 7888888888877766533333333355688888887774 666655
Q ss_pred HHHHH----hCCCCcEEEcccccCh----HHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhh--CCCccc
Q 044749 266 EKLVA----RSPFLRKLRLNRHVSI----RQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAA--CKSLVC 335 (413)
Q Consensus 266 ~~l~~----~~~~L~~L~l~~~~~~----~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~--~~~L~~ 335 (413)
..+.. .+++|+.|+++++.-. ..+...+..+++|++|+++...... .....+...+.. +++|+.
T Consensus 205 ~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~------~~~~~l~~~l~~~~~~~L~~ 278 (386)
T 2ca6_A 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA------RGAAAVVDAFSKLENIGLQT 278 (386)
T ss_dssp HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH------HHHHHHHHHHHTCSSCCCCE
T ss_pred HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch------hhHHHHHHHHhhccCCCeEE
Confidence 44433 5677888888776421 3445556677888888877332110 001123333433 677777
Q ss_pred cc-CCcccChhhHhhH----hhcCCCCCEEEeecccCChhh--HHHHHhcCCCCCEEEe
Q 044749 336 LS-GFREITPDYLSAI----YPVCANLTSLNFSYATITADQ--LKPVICNCHKLQIFGP 387 (413)
Q Consensus 336 L~-~~~~i~~~~l~~l----~~~~~~L~~L~Ls~~~it~~~--l~~l~~~~~~L~~L~l 387 (413)
|. +.+.+++.++..+ ...+++|++|+|++|.++... +..+...+++++.+++
T Consensus 279 L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l 337 (386)
T 2ca6_A 279 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL 337 (386)
T ss_dssp EECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEE
T ss_pred EECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchh
Confidence 77 4446666433322 244678888888887776655 4555555555554444
No 11
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=4e-16 Score=147.07 Aligned_cols=253 Identities=14% Similarity=0.078 Sum_probs=170.2
Q ss_pred hHHHhcCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCC-CCcEEeeeCCccCHHHHHHHHHh----CCCCc
Q 044749 121 DRARGRFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYP-WLEKVYLKRMSITDDDLALLAES----FSGFK 195 (413)
Q Consensus 121 ~~l~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~-~L~~L~L~~~~l~~~~l~~l~~~----~~~L~ 195 (413)
..+....++++.|+++++. +.+ .....+......++ +|++|+|+++.+++.+...++.. +++|+
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~-l~~----------~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNN-LYS----------ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp HHHHTSCTTCCEEECTTSC-GGG----------SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred HHHHhCCCCceEEEccCCC-CCh----------HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 4555556679999999764 221 12222333334677 89999999998876555554443 38899
Q ss_pred EEEeCCCCCCChHH---HHHHHHhC-CcCcEEEccccccccccchhhhccCcc-CCCcceEEeccccC-CCCHHHHHHHH
Q 044749 196 ELTLVCCEGFGTCG---LAFIASKC-RQLRVLDLIETEVTDDEVDWISLFPEG-ETCLESLIFDCVDC-AINFEALEKLV 269 (413)
Q Consensus 196 ~L~L~~c~~~~~~~---l~~~~~~~-~~L~~L~L~~~~i~~~~~~~l~~l~~~-~~~L~~L~L~~~~~-~~~~~~l~~l~ 269 (413)
+|+|++| .++..+ +......+ ++|++|+|++|.+++.+...+...... +++|++|+|+++.- ......+....
T Consensus 84 ~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 84 SLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp EEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred EEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 9999999 666544 33444455 899999999999998876555443333 46999999999841 12233333333
Q ss_pred HhCC-CCcEEEcccccC----hHHHHHHHhcCC-CCceecccCcCCCcccccCCCChhhHHHHHhh-CCCccccc-CCcc
Q 044749 270 ARSP-FLRKLRLNRHVS----IRQLYRLMVRAP-QLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAA-CKSLVCLS-GFRE 341 (413)
Q Consensus 270 ~~~~-~L~~L~l~~~~~----~~~l~~ll~~~p-~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~L~~L~-~~~~ 341 (413)
...+ +|++|++++|.- ...+...+..++ +|++|+++...... .....+...+.. .++|+.|. +.+.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~------~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL------KSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG------SCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh------hHHHHHHHHHhcCCCCceEEECcCCC
Confidence 4454 999999999731 224556677774 99999998533221 223446666666 45899998 5557
Q ss_pred cChhhH---hhHhhcCCCCCEEEeeccc---CChhhHHHHHhcC---CCCCEEEeeccc
Q 044749 342 ITPDYL---SAIYPVCANLTSLNFSYAT---ITADQLKPVICNC---HKLQIFGPSIQY 391 (413)
Q Consensus 342 i~~~~l---~~l~~~~~~L~~L~Ls~~~---it~~~l~~l~~~~---~~L~~L~l~~c~ 391 (413)
+++.+. ..+...+++|++|+|++|. ++++++..+...+ ++|+.|++++..
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 777554 4444567899999999998 7887777776544 556677787765
No 12
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=3.2e-14 Score=134.06 Aligned_cols=116 Identities=14% Similarity=0.084 Sum_probs=47.6
Q ss_pred CCCcEEeeeCCccCHHHHHHHHH---hC-CCCcEEEeCCCCCCChHHHHHHHH---h-CCcCcEEEccccccccccchhh
Q 044749 167 PWLEKVYLKRMSITDDDLALLAE---SF-SGFKELTLVCCEGFGTCGLAFIAS---K-CRQLRVLDLIETEVTDDEVDWI 238 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~---~~-~~L~~L~L~~c~~~~~~~l~~~~~---~-~~~L~~L~L~~~~i~~~~~~~l 238 (413)
++|++|+|+++.+++.....++. .+ ++|+.|+|++| .++..+...+.. . +++|++|+|++|.+++.++..+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 55555555555444332222222 22 34555555555 444333322222 1 2455555555555554443322
Q ss_pred hccCccC-CCcceEEeccccC-CCCHHHHHHHHHhC-CCCcEEEcccc
Q 044749 239 SLFPEGE-TCLESLIFDCVDC-AINFEALEKLVARS-PFLRKLRLNRH 283 (413)
Q Consensus 239 ~~l~~~~-~~L~~L~L~~~~~-~~~~~~l~~l~~~~-~~L~~L~l~~~ 283 (413)
....... ++|++|+|+++.- ......+......+ ++|++|+++++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 2221122 2555555555421 12222232222333 25555555554
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.45 E-value=1.2e-13 Score=134.16 Aligned_cols=96 Identities=17% Similarity=0.106 Sum_probs=57.0
Q ss_pred HHhcCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHH-HHHhCCCCcEEEeCC
Q 044749 123 ARGRFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLAL-LAESFSGFKELTLVC 201 (413)
Q Consensus 123 l~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~-l~~~~~~L~~L~L~~ 201 (413)
.+..+++++.|+++++.-.. ..+..+ ..+++|++|+++++.+++..+.. ....+++|++|+|++
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~---~~~~~~------------~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 138 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQ---LETGAF------------NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCE---ECTTTT------------TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCS
T ss_pred cccccccCCEEeCCCCccCc---cChhhc------------cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCC
Confidence 44567788888887653211 111111 25678888888888776543332 123347788888887
Q ss_pred CCCCChHHHHHHHHhCCcCcEEEcccccccccc
Q 044749 202 CEGFGTCGLAFIASKCRQLRVLDLIETEVTDDE 234 (413)
Q Consensus 202 c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~ 234 (413)
| .++...-..+...+++|++|++++|.+....
T Consensus 139 n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 139 N-NIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp S-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred C-ccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 7 4443221222456788888888888766544
No 14
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.44 E-value=7.3e-13 Score=124.75 Aligned_cols=176 Identities=14% Similarity=0.139 Sum_probs=117.1
Q ss_pred CCCCcEEeeeCCccCHHHHHHHHHhC----CCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhcc
Q 044749 166 YPWLEKVYLKRMSITDDDLALLAESF----SGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLF 241 (413)
Q Consensus 166 ~~~L~~L~L~~~~l~~~~l~~l~~~~----~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l 241 (413)
.+.|++|+|+++.+++.....++..+ ++|++|+|++| .+++.++..+...+++|++|+|++|.+++.++..+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 46788888888888887777766652 46888888888 78887777777777788888888888887775555433
Q ss_pred C-ccCCCcceEEeccccCCCCHHHHHHHH---HhCCCCcEEEcccccChH----HHHHHHhcCCCCceecccCcCCCccc
Q 044749 242 P-EGETCLESLIFDCVDCAINFEALEKLV---ARSPFLRKLRLNRHVSIR----QLYRLMVRAPQLTHLGTGKYGPSEVA 313 (413)
Q Consensus 242 ~-~~~~~L~~L~L~~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~----~l~~ll~~~p~L~~L~l~~~~~~~~~ 313 (413)
. ..+++|++|+|++|. +++.++..+. ..+++|++|++++|.-.. .+...+...++|++|+++.
T Consensus 150 L~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~------- 220 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP--LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY------- 220 (372)
T ss_dssp HHSTTCCCCEEECCSSC--CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS-------
T ss_pred HHhcCCccceeeCCCCC--CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC-------
Confidence 2 345678888888875 6555554443 346778888887763111 2233444556666666652
Q ss_pred ccCCCChhhHHHHHhhCCCcccccCCcccChhhHhhHh---hcCCCCCEEEeecccCChhhHHHHHh
Q 044749 314 QRQGDTEPDYIAAFAACKSLVCLSGFREITPDYLSAIY---PVCANLTSLNFSYATITADQLKPVIC 377 (413)
Q Consensus 314 ~~~g~~~~~~~~~~~~~~~L~~L~~~~~i~~~~l~~l~---~~~~~L~~L~Ls~~~it~~~l~~l~~ 377 (413)
+.+++.+...+. ..+++|++|+|++|.|++.++..+..
T Consensus 221 --------------------------N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 221 --------------------------NGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp --------------------------SCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred --------------------------CCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 244444443333 34577888888888888887776643
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.41 E-value=6.8e-12 Score=117.20 Aligned_cols=165 Identities=22% Similarity=0.225 Sum_probs=98.5
Q ss_pred hCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhc
Q 044749 216 KCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVR 295 (413)
Q Consensus 216 ~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~ 295 (413)
.+++|++|++++|.+.+... + ..+++|+.|++.++... .... ...+++|++|++++|. +..+.. +..
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~--~----~~l~~L~~L~l~~n~l~-~~~~----~~~~~~L~~L~l~~n~-l~~~~~-~~~ 241 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDISP--L----ASLTSLHYFTAYVNQIT-DITP----VANMTRLNSLKIGNNK-ITDLSP-LAN 241 (347)
T ss_dssp GCTTCSEEECTTSCCCCCGG--G----GGCTTCCEEECCSSCCC-CCGG----GGGCTTCCEEECCSSC-CCCCGG-GTT
T ss_pred cCCCCCEEEccCCccccccc--c----cCCCccceeecccCCCC-CCch----hhcCCcCCEEEccCCc-cCCCcc-hhc
Confidence 45555555555555443221 1 23446666666665311 1111 2356778888887762 111111 566
Q ss_pred CCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHH
Q 044749 296 APQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKP 374 (413)
Q Consensus 296 ~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~ 374 (413)
+++|++|+++..... .. ..+..+++|+.|. +...+++. +. ...+++|++|++++|.++......
T Consensus 242 l~~L~~L~l~~n~l~-------~~-----~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 242 LSQLTWLEIGTNQIS-------DI-----NAVKDLTKLKMLNVGSNQISDI--SV-LNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp CTTCCEEECCSSCCC-------CC-----GGGTTCTTCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCGGGHHH
T ss_pred CCCCCEEECCCCccC-------CC-----hhHhcCCCcCEEEccCCccCCC--hh-hcCCCCCCEEECcCCcCCCcChhH
Confidence 788888888743221 11 2345678888887 33355543 33 357899999999999988766544
Q ss_pred HHhcCCCCCEEEeecccccCCCchhhhhccccccccc
Q 044749 375 VICNCHKLQIFGPSIQYVMKDFRPWLQRAKNFVNFGF 411 (413)
Q Consensus 375 l~~~~~~L~~L~l~~c~~i~d~~~~~~~~~~~~~~~~ 411 (413)
+..+++|+.|++++|. +++..+ +..++++..+.+
T Consensus 307 -l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l 340 (347)
T 4fmz_A 307 -IGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADF 340 (347)
T ss_dssp -HHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESS
T ss_pred -hhccccCCEEEccCCc-cccccC-hhhhhccceeeh
Confidence 4689999999999997 455544 555666665554
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.41 E-value=4.3e-12 Score=118.61 Aligned_cols=165 Identities=18% Similarity=0.135 Sum_probs=90.9
Q ss_pred hCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhc
Q 044749 216 KCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVR 295 (413)
Q Consensus 216 ~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~ 295 (413)
.+++|++|++++|.+.+... + ..+++|++|+++++.- ..... ...+++|+.|+++++.. ..+.. +..
T Consensus 153 ~l~~L~~L~l~~~~~~~~~~--~----~~l~~L~~L~l~~n~l-~~~~~----~~~l~~L~~L~l~~n~l-~~~~~-~~~ 219 (347)
T 4fmz_A 153 NMTGLNYLTVTESKVKDVTP--I----ANLTDLYSLSLNYNQI-EDISP----LASLTSLHYFTAYVNQI-TDITP-VAN 219 (347)
T ss_dssp TCTTCCEEECCSSCCCCCGG--G----GGCTTCSEEECTTSCC-CCCGG----GGGCTTCCEEECCSSCC-CCCGG-GGG
T ss_pred hCCCCcEEEecCCCcCCchh--h----ccCCCCCEEEccCCcc-ccccc----ccCCCccceeecccCCC-CCCch-hhc
Confidence 34455555555544433221 1 1334666666665531 11101 23456666666665421 11111 456
Q ss_pred CCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHH
Q 044749 296 APQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKP 374 (413)
Q Consensus 296 ~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~ 374 (413)
+++|++|+++..... ... . +..+++|+.|. +...+++. .. ...+++|++|++++|.+++- .
T Consensus 220 ~~~L~~L~l~~n~l~-------~~~-~----~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~---~ 281 (347)
T 4fmz_A 220 MTRLNSLKIGNNKIT-------DLS-P----LANLSQLTWLEIGTNQISDI--NA-VKDLTKLKMLNVGSNQISDI---S 281 (347)
T ss_dssp CTTCCEEECCSSCCC-------CCG-G----GTTCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCC---G
T ss_pred CCcCCEEEccCCccC-------CCc-c----hhcCCCCCEEECCCCccCCC--hh-HhcCCCcCEEEccCCccCCC---h
Confidence 777777777643221 111 1 55677888877 33344432 22 35678899999999887653 2
Q ss_pred HHhcCCCCCEEEeecccccCCCchhhhhccccccccc
Q 044749 375 VICNCHKLQIFGPSIQYVMKDFRPWLQRAKNFVNFGF 411 (413)
Q Consensus 375 l~~~~~~L~~L~l~~c~~i~d~~~~~~~~~~~~~~~~ 411 (413)
.+..+++|+.|++++|........++..++++..+.+
T Consensus 282 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence 3578899999999998754444555666666655543
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.35 E-value=1e-13 Score=128.64 Aligned_cols=224 Identities=15% Similarity=0.140 Sum_probs=129.2
Q ss_pred hcCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCC
Q 044749 125 GRFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEG 204 (413)
Q Consensus 125 ~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~ 204 (413)
...++++.|++.++. +. -+|... ..+++|+.|+|+++.++ .+......+++|++|+|++| .
T Consensus 78 ~~~~~l~~L~L~~n~-l~---~lp~~l------------~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n-~ 138 (328)
T 4fcg_A 78 ATQPGRVALELRSVP-LP---QFPDQA------------FRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARN-P 138 (328)
T ss_dssp HTSTTCCEEEEESSC-CS---SCCSCG------------GGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESC-C
T ss_pred ccccceeEEEccCCC-ch---hcChhh------------hhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCC-c
Confidence 346788888888643 22 222221 14688888998888665 12111234578888888887 5
Q ss_pred CChHHHHHHHHhCCcCcEEEccccccccccchhhhc-----cCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEE
Q 044749 205 FGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISL-----FPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLR 279 (413)
Q Consensus 205 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~-----l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~ 279 (413)
+. .+......+++|++|++++|.+....+..+.. ....+++|+.|+++++. ++ .+......+++|+.|+
T Consensus 139 l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~--~lp~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 139 LR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG--IR--SLPASIANLQNLKSLK 212 (328)
T ss_dssp CC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC--CC--CCCGGGGGCTTCCEEE
T ss_pred cc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC--cC--cchHhhcCCCCCCEEE
Confidence 55 22333556888888888887654433222221 01235688888888774 21 1111123467788888
Q ss_pred cccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCcccccCCcccChhhHhhHhhcCCCCCE
Q 044749 280 LNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLSGFREITPDYLSAIYPVCANLTS 359 (413)
Q Consensus 280 l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~~~~~i~~~~l~~l~~~~~~L~~ 359 (413)
++++. +..+...+..+++|+.|+++.... ... ++.....+++|++
T Consensus 213 L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~---------------------------------~~~-~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 213 IRNSP-LSALGPAIHHLPKLEELDLRGCTA---------------------------------LRN-YPPIFGGRAPLKR 257 (328)
T ss_dssp EESSC-CCCCCGGGGGCTTCCEEECTTCTT---------------------------------CCB-CCCCTTCCCCCCE
T ss_pred ccCCC-CCcCchhhccCCCCCEEECcCCcc---------------------------------hhh-hHHHhcCCCCCCE
Confidence 87752 122222345566777777652111 110 1111235677888
Q ss_pred EEeecccCChhhHHHHHhcCCCCCEEEeecccccCCCchhhhhccccccc
Q 044749 360 LNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKDFRPWLQRAKNFVNF 409 (413)
Q Consensus 360 L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~~~~~~~~~~~~~ 409 (413)
|+|++|.+.... ..-+..+++|+.|+|++|..++..+.++.+++++..+
T Consensus 258 L~L~~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 258 LILKDCSNLLTL-PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp EECTTCTTCCBC-CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred EECCCCCchhhc-chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 888877633221 1224677788888888887777777777776665544
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.33 E-value=4.8e-13 Score=129.89 Aligned_cols=115 Identities=11% Similarity=0.075 Sum_probs=73.7
Q ss_pred HHhcCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCC
Q 044749 123 ARGRFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCC 202 (413)
Q Consensus 123 l~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c 202 (413)
.+..+++++.|+++++...... .+..+ ..+++|+.|+|+++.++......+ ..+++|++|+|++|
T Consensus 49 ~~~~l~~L~~L~L~~n~~~~~i--~~~~~------------~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n 113 (455)
T 3v47_A 49 SFSRLQDLQFLKVEQQTPGLVI--RNNTF------------RGLSSLIILKLDYNQFLQLETGAF-NGLANLEVLTLTQC 113 (455)
T ss_dssp TTSSCTTCCEEECCCCSTTCEE--CTTTT------------TTCTTCCEEECTTCTTCEECTTTT-TTCTTCCEEECTTS
T ss_pred HhccCccccEEECcCCcccceE--Ccccc------------cccccCCEEeCCCCccCccChhhc-cCcccCCEEeCCCC
Confidence 3456778888888865321110 00111 257899999999987654322222 33588999999999
Q ss_pred CCCChHHHHH-HHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccc
Q 044749 203 EGFGTCGLAF-IASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCV 256 (413)
Q Consensus 203 ~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~ 256 (413)
.++...... ....+++|++|+|++|.+....... +...+++|++|+++++
T Consensus 114 -~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 114 -NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS---FFLNMRRFHVLDLTFN 164 (455)
T ss_dssp -CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG---GGGGCTTCCEEECTTC
T ss_pred -CCCccccCcccccCcccCCEEECCCCccCccCccc---ccCCCCcccEEeCCCC
Confidence 666433221 2456899999999999987654222 1224458888888776
No 19
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=2.7e-12 Score=120.91 Aligned_cols=164 Identities=14% Similarity=0.116 Sum_probs=117.8
Q ss_pred hCCCCcEEEeCCCCCCChHHHHHHHHh----CCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHH
Q 044749 190 SFSGFKELTLVCCEGFGTCGLAFIASK----CRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEAL 265 (413)
Q Consensus 190 ~~~~L~~L~L~~c~~~~~~~l~~~~~~----~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l 265 (413)
..++|+.|+|++| .++..+...+... +++|++|+|++|.+++.+ +..+...+++|++|+|++|. +++.+.
T Consensus 70 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~---~~~l~~~L~~L~~L~Ls~n~--l~~~~~ 143 (372)
T 3un9_A 70 VLSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG---LRTLLPVFLRARKLGLQLNS--LGPEAC 143 (372)
T ss_dssp HHTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH---HHHTHHHHHTEEEEECCSSC--CCHHHH
T ss_pred HHhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH---HHHHHHHHHhccHhhcCCCC--CCHHHH
Confidence 3468999999999 7888776555442 469999999999998877 44444444589999999985 777776
Q ss_pred HHHHH----hCCCCcEEEcccccChH----HHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc
Q 044749 266 EKLVA----RSPFLRKLRLNRHVSIR----QLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS 337 (413)
Q Consensus 266 ~~l~~----~~~~L~~L~l~~~~~~~----~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~ 337 (413)
..+.. .+++|++|++++|.-.. .+...+..+++|++|+++..
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N------------------------------ 193 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT------------------------------ 193 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS------------------------------
T ss_pred HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC------------------------------
Confidence 66543 35889999998874211 24445566777777777621
Q ss_pred CCcccChhhHhhH---hhcCCCCCEEEeecccCChhhHHHH---HhcCCCCCEEEeecccc
Q 044749 338 GFREITPDYLSAI---YPVCANLTSLNFSYATITADQLKPV---ICNCHKLQIFGPSIQYV 392 (413)
Q Consensus 338 ~~~~i~~~~l~~l---~~~~~~L~~L~Ls~~~it~~~l~~l---~~~~~~L~~L~l~~c~~ 392 (413)
.+++.++..+ ...+++|++|+|++|.+++.++..+ +..+++|++|+|++|..
T Consensus 194 ---~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 194 ---GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp ---SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred ---CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 3334333322 2456799999999999999876655 45789999999999863
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.26 E-value=5.6e-13 Score=134.23 Aligned_cols=78 Identities=9% Similarity=0.087 Sum_probs=35.3
Q ss_pred hhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCCCchhhhhcccc
Q 044749 328 AACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKDFRPWLQRAKNF 406 (413)
Q Consensus 328 ~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~~~~~~~~~~ 406 (413)
..+++|+.|. ....++......+ ..+++|++|+|++|.++...... +..+++| .|+++++....-.+..+..+.++
T Consensus 473 ~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L 549 (606)
T 3t6q_A 473 QTLGRLEILVLSFCDLSSIDQHAF-TSLKMMNHVDLSHNRLTSSSIEA-LSHLKGI-YLNLASNHISIILPSLLPILSQQ 549 (606)
T ss_dssp GGCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCGGGGGG-GTTCCSC-EEECCSSCCCCCCGGGHHHHHTS
T ss_pred ccCCCccEEECCCCccCccChhhh-ccccCCCEEECCCCccCcCChhH-hCccccc-EEECcCCcccccCHhhcccCCCC
Confidence 3455555555 2223332211122 34566666666666655433222 3455566 66666654433223333444444
Q ss_pred cc
Q 044749 407 VN 408 (413)
Q Consensus 407 ~~ 408 (413)
..
T Consensus 550 ~~ 551 (606)
T 3t6q_A 550 RT 551 (606)
T ss_dssp SE
T ss_pred CE
Confidence 33
No 21
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.25 E-value=3.9e-12 Score=105.07 Aligned_cols=104 Identities=13% Similarity=0.150 Sum_probs=82.3
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHH---hCCcCcEEEccccc-cccccchhhhccC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIAS---KCRQLRVLDLIETE-VTDDEVDWISLFP 242 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~---~~~~L~~L~L~~~~-i~~~~~~~l~~l~ 242 (413)
..|++|+++++.+++.++..+. .+++|+.|+|++|..+++.++..+.. .|++|++|+|++|. |+|.+ +..+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G---l~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG---IIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH---HHHGG
T ss_pred ceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH---HHHHh
Confidence 4689999999999999988874 67899999999998899999988876 36789999999886 88888 54443
Q ss_pred ccCCCcceEEeccccCCCCHHH--HHHHHHhCCCCc
Q 044749 243 EGETCLESLIFDCVDCAINFEA--LEKLVARSPFLR 276 (413)
Q Consensus 243 ~~~~~L~~L~L~~~~~~~~~~~--l~~l~~~~~~L~ 276 (413)
.|++|++|+|++|. .+++.+ ...+....|+++
T Consensus 137 -~~~~L~~L~L~~c~-~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 137 -HFRNLKYLFLSDLP-GVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp -GCTTCCEEEEESCT-TCCCHHHHHHHHHHHCTTCE
T ss_pred -cCCCCCEEECCCCC-CCCchHHHHHHHHHHCCCcE
Confidence 46789999998887 566654 455666677765
No 22
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.24 E-value=7.5e-12 Score=117.30 Aligned_cols=43 Identities=14% Similarity=0.006 Sum_probs=27.6
Q ss_pred hcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCC
Q 044749 352 PVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKD 395 (413)
Q Consensus 352 ~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d 395 (413)
..+++|++|+|++|.++.-. ..++..+++|+.|++++++...+
T Consensus 274 ~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 274 NQISGLLELEFSRNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCBCCC
T ss_pred hcccCCCEEECCCCCCCccC-HHHHhcCCCCCEEEeeCCCccCc
Confidence 45678888888887765211 12235677888888877765444
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.23 E-value=8.7e-13 Score=132.84 Aligned_cols=64 Identities=11% Similarity=0.109 Sum_probs=36.7
Q ss_pred HhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeeccccc
Q 044749 327 FAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVM 393 (413)
Q Consensus 327 ~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i 393 (413)
+..+++|+.|. ..+.++......+ ..+++| .|+|++|.++... ...+..+++|+.|++++++..
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L-~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSSIEAL-SHLKGI-YLNLASNHISIIL-PSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGGGGGG-TTCCSC-EEECCSSCCCCCC-GGGHHHHHTSSEEECTTCCEE
T ss_pred hccccCCCEEECCCCccCcCChhHh-Cccccc-EEECcCCcccccC-HhhcccCCCCCEEeCCCCCcc
Confidence 34566777766 3335554433333 456777 7777777755322 222345667777777776543
No 24
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.23 E-value=2.1e-13 Score=141.07 Aligned_cols=223 Identities=14% Similarity=0.153 Sum_probs=127.7
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHH--HHHhCCcCcEEEccccccccccchhhhccC
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAF--IASKCRQLRVLDLIETEVTDDEVDWISLFP 242 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~--~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~ 242 (413)
.+++|+.|+++++.++......+...+++|++|+|++| .++...... ...+|++|++|++++|.+.+... +
T Consensus 124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~---- 196 (768)
T 3rgz_A 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDVD--V---- 196 (768)
T ss_dssp GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--C----
T ss_pred CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCCcccccCC--c----
Confidence 56667777776664432111111123456777777776 444322211 14567777777777777654321 1
Q ss_pred ccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhh
Q 044749 243 EGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPD 322 (413)
Q Consensus 243 ~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~ 322 (413)
..+++|++|+++++...... .. ...+++|++|+++++.-...+...+..+++|++|+++...... ....
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~---~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~------~~~~- 265 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGI---PF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG------PIPP- 265 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCC---CB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE------SCCC-
T ss_pred ccCCcCCEEECcCCcCCCCC---cc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccC------ccCc-
Confidence 35568888888777411111 11 2346888888888764333455666778888888887432110 0000
Q ss_pred HHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCCCchh-h
Q 044749 323 YIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKDFRPW-L 400 (413)
Q Consensus 323 ~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~~~-~ 400 (413)
..+++|+.|. ....++......+...|++|++|+|++|.++... ...+..+++|++|++.+|......+.. +
T Consensus 266 -----~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~ip~~~l 339 (768)
T 3rgz_A 266 -----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV-PPFFGSCSLLESLALSSNNFSGELPMDTL 339 (768)
T ss_dssp -----CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC-CGGGGGCTTCCEEECCSSEEEEECCHHHH
T ss_pred -----cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc-chHHhcCCCccEEECCCCcccCcCCHHHH
Confidence 1466777777 3334443333334344688999999998865322 233578899999999998765444443 5
Q ss_pred hhccccccccc
Q 044749 401 QRAKNFVNFGF 411 (413)
Q Consensus 401 ~~~~~~~~~~~ 411 (413)
..++++..+.+
T Consensus 340 ~~l~~L~~L~L 350 (768)
T 3rgz_A 340 LKMRGLKVLDL 350 (768)
T ss_dssp TTCTTCCEEEC
T ss_pred hcCCCCCEEeC
Confidence 66666655543
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.23 E-value=1.4e-10 Score=112.97 Aligned_cols=234 Identities=15% Similarity=0.149 Sum_probs=127.7
Q ss_pred HhcCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCC
Q 044749 124 RGRFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCE 203 (413)
Q Consensus 124 ~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~ 203 (413)
...+++++.|+++++.- ... .+ ...+++|+.|+++++.+++... ...+++|++|++++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l-~~~-----------~~-----~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n- 122 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQL-TDI-----------TP-----LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNN- 122 (466)
T ss_dssp GGGCTTCCEEECCSSCC-CCC-----------GG-----GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSS-
T ss_pred hhhhcCCCEEECCCCcc-CCc-----------hh-----hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCC-
Confidence 46688999999987642 111 00 1367888888888886654221 334578888888888
Q ss_pred CCChHHHHHHHHhCCcCcEEEccccccccccchhhhcc-----------------CccCCCcceEEeccccCCCCHHHHH
Q 044749 204 GFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLF-----------------PEGETCLESLIFDCVDCAINFEALE 266 (413)
Q Consensus 204 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l-----------------~~~~~~L~~L~L~~~~~~~~~~~l~ 266 (413)
.++... . ...+++|++|++++|.+.+.. .+..+ ...+++|+.|+++++. +.. +.
T Consensus 123 ~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~--~~ 193 (466)
T 1o6v_A 123 QITDID--P-LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK--VSD--IS 193 (466)
T ss_dssp CCCCCG--G-GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC--CCC--CG
T ss_pred CCCCCh--H-HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc--CCC--Ch
Confidence 554322 1 456888888888888766532 12111 1234455555555553 110 01
Q ss_pred HHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChh
Q 044749 267 KLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPD 345 (413)
Q Consensus 267 ~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~ 345 (413)
....+++|++|+++++.. ..+.. +..+++|++|+++..... .. ..+..+++|+.|. ....++..
T Consensus 194 -~l~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~l~-------~~-----~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 194 -VLAKLTNLESLIATNNQI-SDITP-LGILTNLDELSLNGNQLK-------DI-----GTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp -GGGGCTTCSEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCCC-------CC-----GGGGGCTTCSEEECCSSCCCCC
T ss_pred -hhccCCCCCEEEecCCcc-ccccc-ccccCCCCEEECCCCCcc-------cc-----hhhhcCCCCCEEECCCCccccc
Confidence 122355666666655421 11111 344566666666532211 00 1234566777766 22233322
Q ss_pred hHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCCCchhhhhcccccccc
Q 044749 346 YLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKDFRPWLQRAKNFVNFG 410 (413)
Q Consensus 346 ~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~~~~~~~~~~~~~~ 410 (413)
. . ...+++|++|++++|.++.... +..+++|+.|++++|.. ++..+ +..++++..+.
T Consensus 259 ~--~-~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l-~~~~~-~~~l~~L~~L~ 315 (466)
T 1o6v_A 259 A--P-LSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQL-EDISP-ISNLKNLTYLT 315 (466)
T ss_dssp G--G-GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCC-SCCGG-GGGCTTCSEEE
T ss_pred h--h-hhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcc-cCchh-hcCCCCCCEEE
Confidence 1 1 3466778888888877654321 46778888888887753 44333 44455544443
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.22 E-value=4.3e-12 Score=118.93 Aligned_cols=225 Identities=15% Similarity=0.070 Sum_probs=125.3
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+++|+.|+++++.++......+ ..+++|++|+|++| .++... ......+++|++|++++|.+..-.. ......
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~---~~~~~~ 147 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSF-SSLGSLEHLDLSYN-YLSNLS-SSWFKPLSSLTFLNLLGNPYKTLGE---TSLFSH 147 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSS-CCSSCC-HHHHTTCTTCSEEECTTCCCSSSCS---SCSCTT
T ss_pred cCCCCCEEECCCCccCccCHhhc-CCCCCCCEEECCCC-cCCcCC-HhHhCCCccCCEEECCCCCCcccCc---hhhhcc
Confidence 56788888888776553211111 23467888888877 554322 1224567888888888877664321 012224
Q ss_pred CCCcceEEecccc--CCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhh
Q 044749 245 ETCLESLIFDCVD--CAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPD 322 (413)
Q Consensus 245 ~~~L~~L~L~~~~--~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~ 322 (413)
+++|+.|+++++. ..+.... ...+++|++|+++++.-.......+..+++|++|+++.... ...
T Consensus 148 l~~L~~L~l~~n~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l----------~~~ 213 (353)
T 2z80_A 148 LTKLQILRVGNMDTFTKIQRKD----FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH----------ILL 213 (353)
T ss_dssp CTTCCEEEEEESSSCCEECTTT----TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS----------TTH
T ss_pred CCCCcEEECCCCccccccCHHH----ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc----------ccc
Confidence 5588888887762 1111111 13467788888877532111133445677788887763221 111
Q ss_pred HHHHHhhCCCccccc-CCcccChhhHhhH--hhcCCCCCEEEeecccCChhhHHHH---HhcCCCCCEEEeecccccCCC
Q 044749 323 YIAAFAACKSLVCLS-GFREITPDYLSAI--YPVCANLTSLNFSYATITADQLKPV---ICNCHKLQIFGPSIQYVMKDF 396 (413)
Q Consensus 323 ~~~~~~~~~~L~~L~-~~~~i~~~~l~~l--~~~~~~L~~L~Ls~~~it~~~l~~l---~~~~~~L~~L~l~~c~~i~d~ 396 (413)
-......+++|+.|. ....++......+ ...+..++.++|+.+.+++..+..+ +..+++|+.|+++++.. +..
T Consensus 214 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l-~~i 292 (353)
T 2z80_A 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL-KSV 292 (353)
T ss_dssp HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC-CCC
T ss_pred hhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC-Ccc
Confidence 122344567777776 2223333222211 1345778888888888877765543 56788888888888753 444
Q ss_pred chh-hhhcccccccc
Q 044749 397 RPW-LQRAKNFVNFG 410 (413)
Q Consensus 397 ~~~-~~~~~~~~~~~ 410 (413)
+.+ +..++++..+.
T Consensus 293 ~~~~~~~l~~L~~L~ 307 (353)
T 2z80_A 293 PDGIFDRLTSLQKIW 307 (353)
T ss_dssp CTTTTTTCTTCCEEE
T ss_pred CHHHHhcCCCCCEEE
Confidence 444 35555555443
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.22 E-value=2.1e-12 Score=126.18 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=37.2
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+++|+.|+|+++.++.-... ....+++|+.|+|+++ .+.... ......+++|++|++++|.+.......+. .
T Consensus 78 ~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~ 150 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKLIPLG-VFTGLSNLTKLDISEN-KIVILL-DYMFQDLYNLKSLEVGDNDLVYISHRAFS----G 150 (477)
T ss_dssp TCTTCCEEECCSSCCCSCCTT-SSTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEEECCTTCCEECTTSST----T
T ss_pred CCccCCEEECCCCcCCccCcc-cccCCCCCCEEECCCC-ccccCC-hhHccccccCCEEECCCCccceeChhhcc----C
Confidence 345566666665544321100 0112355666666655 332211 11123455666666665554433211122 2
Q ss_pred CCCcceEEeccc
Q 044749 245 ETCLESLIFDCV 256 (413)
Q Consensus 245 ~~~L~~L~L~~~ 256 (413)
+++|++|++.++
T Consensus 151 l~~L~~L~l~~n 162 (477)
T 2id5_A 151 LNSLEQLTLEKC 162 (477)
T ss_dssp CTTCCEEEEESC
T ss_pred CCCCCEEECCCC
Confidence 335555555555
No 28
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.22 E-value=1.2e-12 Score=118.95 Aligned_cols=63 Identities=14% Similarity=-0.007 Sum_probs=37.4
Q ss_pred hCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeeccccc
Q 044749 329 ACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVM 393 (413)
Q Consensus 329 ~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i 393 (413)
.+++|+.|. ....++......+ ..+++|++|+|++|.++.... ..+..+++|+.|++++++..
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCEE
T ss_pred CccccCEEECCCCcccccCHhHc-cCcccccEeeCCCCcCCcCCH-HHcccCcccCEEeccCCCcc
Confidence 345555555 2223333222222 456788888888888665332 34567888888888876644
No 29
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.21 E-value=3.2e-11 Score=110.79 Aligned_cols=169 Identities=22% Similarity=0.240 Sum_probs=84.2
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+++|+.|+++++.+++-.. ...+++|+.|+|++| .++.. . ....+++|++|++++|.+++-. .+ ..
T Consensus 61 ~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n-~l~~~--~-~~~~l~~L~~L~l~~n~l~~~~--~l----~~ 127 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITDLAP---LKNLTKITELELSGN-PLKNV--S-AIAGLQSIKTLDLTSTQITDVT--PL----AG 127 (308)
T ss_dssp GCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSC-CCSCC--G-GGTTCTTCCEEECTTSCCCCCG--GG----TT
T ss_pred ccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCC-cCCCc--h-hhcCCCCCCEEECCCCCCCCch--hh----cC
Confidence 45666666666665443211 233456666666665 33322 1 1334566666666666655421 12 23
Q ss_pred CCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHH
Q 044749 245 ETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYI 324 (413)
Q Consensus 245 ~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~ 324 (413)
+++|+.|+++++. ++. +.. ...+++|+.|+++++. +..+.. +..+++|++|+++.
T Consensus 128 l~~L~~L~l~~n~--l~~--~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~------------------ 182 (308)
T 1h6u_A 128 LSNLQVLYLDLNQ--ITN--ISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADD------------------ 182 (308)
T ss_dssp CTTCCEEECCSSC--CCC--CGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCS------------------
T ss_pred CCCCCEEECCCCc--cCc--Ccc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCC------------------
Confidence 3466666666553 110 000 2235556666665541 111111 34455555555542
Q ss_pred HHHhhCCCcccccCCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccc
Q 044749 325 AAFAACKSLVCLSGFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYV 392 (413)
Q Consensus 325 ~~~~~~~~L~~L~~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~ 392 (413)
..+++. .. ...+++|++|+|++|.+++.. . +..+++|+.|++.+++.
T Consensus 183 ---------------n~l~~~--~~-l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 183 ---------------NKISDI--SP-LASLPNLIEVHLKNNQISDVS--P-LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp ---------------SCCCCC--GG-GGGCTTCCEEECTTSCCCBCG--G-GTTCTTCCEEEEEEEEE
T ss_pred ---------------CccCcC--hh-hcCCCCCCEEEccCCccCccc--c-ccCCCCCCEEEccCCee
Confidence 122221 11 245677777777777765433 2 46777777777777653
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.20 E-value=1.6e-12 Score=126.07 Aligned_cols=202 Identities=15% Similarity=0.014 Sum_probs=118.3
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+++|+.|+|+++.++......+ ..+++|++|+|+++ .++... ......+++|++|+|++|.+..-....+. .
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~ 169 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIEVGAF-NGLASLNTLELFDN-WLTVIP-SGAFEYLSKLRELWLRNNPIESIPSYAFN----R 169 (452)
T ss_dssp TCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSS-CCSBCC-TTTSSSCTTCCEEECCSCCCCEECTTTTT----T
T ss_pred CCCCCCEEECCCCccCCcChhhc-cCcccCCEEECCCC-cCCccC-hhhhcccCCCCEEECCCCCcceeCHhHHh----c
Confidence 56788888888876553211112 23477888888877 444221 11234578888888888876643321222 4
Q ss_pred CCCcceEEeccccC--CCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhh
Q 044749 245 ETCLESLIFDCVDC--AINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPD 322 (413)
Q Consensus 245 ~~~L~~L~L~~~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~ 322 (413)
+++|+.|++.++.. .+... ....+++|+.|+++++. +..+. .+..+++|+.|+++..... ..
T Consensus 170 l~~L~~L~l~~~~~l~~i~~~----~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N~l~----------~~ 233 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISEG----AFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELEMSGNHFP----------EI 233 (452)
T ss_dssp CTTCCEEECCCCTTCCEECTT----TTTTCTTCCEEECTTSC-CSSCC-CCTTCTTCCEEECTTSCCS----------EE
T ss_pred CCcccEEeCCCCCCccccChh----hccCCCCCCEEECCCCc-ccccc-cccccccccEEECcCCcCc----------cc
Confidence 55888888877531 11111 12346888888888762 12211 2445778888888743221 11
Q ss_pred HHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeeccc
Q 044749 323 YIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQY 391 (413)
Q Consensus 323 ~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~ 391 (413)
....+..+++|+.|. ..+.++......+ ..+++|++|+|++|.++... ...+..+++|+.|+|.+++
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAF-DGLASLVELNLAHNNLSSLP-HDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCSCCC-TTSSTTCTTCCEEECCSSC
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHh-cCCCCCCEEECCCCcCCccC-hHHhccccCCCEEEccCCC
Confidence 122345677888877 3334443322222 56788999999988865322 2234578889999988865
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.19 E-value=2.9e-13 Score=124.75 Aligned_cols=243 Identities=13% Similarity=0.123 Sum_probs=149.6
Q ss_pred CCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeC-CccCHHHHHHHHHhCCCCcEEEeCCCCCCC
Q 044749 128 RRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKR-MSITDDDLALLAESFSGFKELTLVCCEGFG 206 (413)
Q Consensus 128 ~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~-~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~ 206 (413)
.+++.+++.++.-... ..++. ....+++|+.|++++ +.+.......+ ..+++|++|+|+++ .++
T Consensus 50 ~~l~~L~L~~~~l~~~-~~~~~------------~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n-~l~ 114 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP-YPIPS------------SLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHT-NVS 114 (313)
T ss_dssp CCEEEEEEECCCCSSC-EECCG------------GGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEE-CCE
T ss_pred ceEEEEECCCCCccCC-cccCh------------hHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCC-eeC
Confidence 6888999987542210 01111 113689999999994 54432222222 34689999999988 554
Q ss_pred hHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCC-CCHHHHHHHHHhCC-CCcEEEccccc
Q 044749 207 TCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCA-INFEALEKLVARSP-FLRKLRLNRHV 284 (413)
Q Consensus 207 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~-~~~~~l~~l~~~~~-~L~~L~l~~~~ 284 (413)
.. +......+++|++|++++|.+....+..+..+ ++|++|+++++.-. .-... + ..++ +|+.|+++++.
T Consensus 115 ~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l----~~L~~L~L~~N~l~~~~p~~---l-~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 115 GA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSL----PNLVGITFDGNRISGAIPDS---Y-GSFSKLFTSMTISRNR 185 (313)
T ss_dssp EE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGC----TTCCEEECCSSCCEEECCGG---G-GCCCTTCCEEECCSSE
T ss_pred Cc-CCHHHhCCCCCCEEeCCCCccCCcCChHHhcC----CCCCeEECcCCcccCcCCHH---H-hhhhhcCcEEECcCCe
Confidence 21 12224568999999999999886654455554 49999999988511 11111 1 2355 89999999873
Q ss_pred ChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEee
Q 044749 285 SIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFS 363 (413)
Q Consensus 285 ~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls 363 (413)
-.......+..++ |+.|+++..... ......+..+++|+.|. ....++.. .+. ...+++|++|+|+
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~----------~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~-~~~l~~L~~L~Ls 252 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLE----------GDASVLFGSDKNTQKIHLAKNSLAFD-LGK-VGLSKNLNGLDLR 252 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEE----------ECCGGGCCTTSCCSEEECCSSEECCB-GGG-CCCCTTCCEEECC
T ss_pred eeccCChHHhCCc-ccEEECcCCccc----------CcCCHHHhcCCCCCEEECCCCceeee-cCc-ccccCCCCEEECc
Confidence 2212223344455 999999842211 11122345678888887 44355422 222 3467999999999
Q ss_pred cccCChhhHHHHHhcCCCCCEEEeecccccCCCchhhhhccccccc
Q 044749 364 YATITADQLKPVICNCHKLQIFGPSIQYVMKDFRPWLQRAKNFVNF 409 (413)
Q Consensus 364 ~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~~~~~~~~~~~~~ 409 (413)
+|.++... ...+..+++|+.|+++++...+..+.. ..++++..+
T Consensus 253 ~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l 296 (313)
T 1ogq_A 253 NNRIYGTL-PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296 (313)
T ss_dssp SSCCEECC-CGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG
T ss_pred CCcccCcC-ChHHhcCcCCCEEECcCCcccccCCCC-ccccccChH
Confidence 99976432 233578899999999998754444333 444444443
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.19 E-value=2.3e-10 Score=111.36 Aligned_cols=190 Identities=19% Similarity=0.177 Sum_probs=103.9
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+++|+.|+++++.+++... ...+++|+.|++++| .++... ....+++|++|++++|.+.+... + ..
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--~----~~ 263 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP---LGILTNLDELSLNGN-QLKDIG---TLASLTNLTDLDLANNQISNLAP--L----SG 263 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSSCCCCCGG--G----TT
T ss_pred cCCCCCEEEecCCccccccc---ccccCCCCEEECCCC-Ccccch---hhhcCCCCCEEECCCCccccchh--h----hc
Confidence 45666666666665443211 223466777777666 443321 13456677777777766554321 1 24
Q ss_pred CCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHH
Q 044749 245 ETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYI 324 (413)
Q Consensus 245 ~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~ 324 (413)
+++|+.|+++++.-. .... ...+++|+.|+++++. +.++.. +..+++|+.|+++..... ....
T Consensus 264 l~~L~~L~l~~n~l~-~~~~----~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~-------~~~~--- 326 (466)
T 1o6v_A 264 LTKLTELKLGANQIS-NISP----LAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNNIS-------DISP--- 326 (466)
T ss_dssp CTTCSEEECCSSCCC-CCGG----GTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSCCS-------CCGG---
T ss_pred CCCCCEEECCCCccC-cccc----ccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCcCC-------Cchh---
Confidence 457777777766411 1111 2346777777777652 111111 456777777777632211 0111
Q ss_pred HHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccc
Q 044749 325 AAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYV 392 (413)
Q Consensus 325 ~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~ 392 (413)
+..+++|+.|. ....+++. ..+ ..+++|+.|++++|.+++..- +..+++|+.|++.+|..
T Consensus 327 --~~~l~~L~~L~l~~n~l~~~--~~l-~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 327 --VSSLTKLQRLFFYNNKVSDV--SSL-ANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAW 387 (466)
T ss_dssp --GGGCTTCCEEECCSSCCCCC--GGG-TTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEE
T ss_pred --hccCccCCEeECCCCccCCc--hhh-ccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcc
Confidence 34667777776 22244432 233 456778888888777654332 56778888888877753
No 33
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.18 E-value=6.2e-11 Score=97.85 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=20.3
Q ss_pred CcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHH
Q 044749 220 LRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLV 269 (413)
Q Consensus 220 L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~ 269 (413)
|++|++++|.|+|.+ +..+. +|++|++|+|++|. .+++.++..+.
T Consensus 63 L~~LDLs~~~Itd~G---L~~L~-~~~~L~~L~L~~C~-~ItD~gL~~L~ 107 (176)
T 3e4g_A 63 IQAIDATDSCIMSIG---FDHME-GLQYVEKIRLCKCH-YIEDGCLERLS 107 (176)
T ss_dssp EEEEEEESCCCCGGG---GGGGT-TCSCCCEEEEESCT-TCCHHHHHHHH
T ss_pred EeEEeCcCCCccHHH---HHHhc-CCCCCCEEEeCCCC-ccCHHHHHHHH
Confidence 444444444444444 32221 34455555555554 44454444444
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.18 E-value=1.3e-12 Score=126.31 Aligned_cols=202 Identities=16% Similarity=0.043 Sum_probs=126.3
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+++|+.|+|+++.++......+ ..+++|++|+|+++ .++... ......+++|++|+|++|.+..-....+. .
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~-~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~~----~ 158 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAF-NGLANLNTLELFDN-RLTTIP-NGAFVYLSKLKELWLRNNPIESIPSYAFN----R 158 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGG-TTCSSCCEEECCSS-CCSSCC-TTTSCSCSSCCEEECCSCCCCEECTTTTT----T
T ss_pred CCCCCCEEECCCCcCCccChhhc-cCCccCCEEECCCC-cCCeeC-HhHhhccccCceeeCCCCcccccCHHHhh----h
Confidence 67889999999886653222122 23578999999887 554321 11234678899999999887654322233 4
Q ss_pred CCCcceEEeccccC--CCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhh
Q 044749 245 ETCLESLIFDCVDC--AINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPD 322 (413)
Q Consensus 245 ~~~L~~L~L~~~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~ 322 (413)
+++|+.|++.++.. .+... ....+++|+.|+++++. +..+. .+..+++|+.|+++...... .
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~----~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N~l~~----------~ 222 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEG----AFEGLSNLRYLNLAMCN-LREIP-NLTPLIKLDELDLSGNHLSA----------I 222 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTT----TTTTCSSCCEEECTTSC-CSSCC-CCTTCSSCCEEECTTSCCCE----------E
T ss_pred CcccCEeCCCCCCCcceeCcc----hhhcccccCeecCCCCc-Ccccc-ccCCCcccCEEECCCCccCc----------c
Confidence 55999999987531 11111 12357899999998862 12221 14567889999988432211 1
Q ss_pred HHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeeccc
Q 044749 323 YIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQY 391 (413)
Q Consensus 323 ~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~ 391 (413)
....+..+++|+.|. ..+.++......+ ..+++|++|+|++|.++... ...+..+++|+.|+|.+.+
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAF-DNLQSLVEINLAHNNLTLLP-HDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSS-TTCTTCCEEECTTSCCCCCC-TTTTSSCTTCCEEECCSSC
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhh-cCCCCCCEEECCCCCCCccC-hhHhccccCCCEEEcCCCC
Confidence 112345677888887 3334543332223 56789999999999876433 2234678999999998865
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.18 E-value=1.4e-12 Score=121.06 Aligned_cols=201 Identities=15% Similarity=0.085 Sum_probs=121.1
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
..++++.|+|+++.++. ....+.. +++|++|+|+++ .++ .+......+++|++|+|++|.+. ..+..+. .
T Consensus 79 ~~~~l~~L~L~~n~l~~-lp~~l~~-l~~L~~L~L~~n-~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~----~ 148 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ-FPDQAFR-LSHLQHMTIDAA-GLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIA----S 148 (328)
T ss_dssp TSTTCCEEEEESSCCSS-CCSCGGG-GTTCSEEEEESS-CCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG----G
T ss_pred cccceeEEEccCCCchh-cChhhhh-CCCCCEEECCCC-Ccc--chhHHHhccCCCCEEECCCCccc-cCcHHHh----c
Confidence 45889999999886651 1111233 578999999888 555 22233456888999999988877 3323333 3
Q ss_pred CCCcceEEeccccCCCC-HHHHH-----HHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCC
Q 044749 245 ETCLESLIFDCVDCAIN-FEALE-----KLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGD 318 (413)
Q Consensus 245 ~~~L~~L~L~~~~~~~~-~~~l~-----~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~ 318 (413)
+++|+.|++++|..... ...+. .....+++|+.|+++++. +..+...+..+++|++|+++.
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~------------ 215 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRN------------ 215 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEES------------
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccC------------
Confidence 45888888888631100 00000 000125566666666542 112222234444555555441
Q ss_pred ChhhHHHHHhhCCCcccccCCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCCCch
Q 044749 319 TEPDYIAAFAACKSLVCLSGFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKDFRP 398 (413)
Q Consensus 319 ~~~~~~~~~~~~~~L~~L~~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~~ 398 (413)
+ .++. ++.....+++|++|+|++|.+.... ...+..+++|+.|+|.+|..++..+.
T Consensus 216 --------------------N-~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 216 --------------------S-PLSA--LGPAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp --------------------S-CCCC--CCGGGGGCTTCCEEECTTCTTCCBC-CCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred --------------------C-CCCc--CchhhccCCCCCEEECcCCcchhhh-HHHhcCCCCCCEEECCCCCchhhcch
Confidence 1 2221 1222357899999999998854332 22356889999999999999888888
Q ss_pred hhhhcccccccccc
Q 044749 399 WLQRAKNFVNFGFF 412 (413)
Q Consensus 399 ~~~~~~~~~~~~~~ 412 (413)
++..++++..+.+.
T Consensus 272 ~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 272 DIHRLTQLEKLDLR 285 (328)
T ss_dssp TGGGCTTCCEEECT
T ss_pred hhhcCCCCCEEeCC
Confidence 88888877766543
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.17 E-value=1.1e-12 Score=132.06 Aligned_cols=216 Identities=14% Similarity=0.061 Sum_probs=114.7
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHH-HHHHHHhCCcCcEEEccccccccccchhhhccCc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCG-LAFIASKCRQLRVLDLIETEVTDDEVDWISLFPE 243 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~-l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~ 243 (413)
.+++|++|+++++...... . ...+++|++|++++| .++... +......+++|++|++++|.+.... ..+ .
T Consensus 326 ~l~~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~----~ 396 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF--K-KVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANF----M 396 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC--C-CCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCC----T
T ss_pred CCCccceeeccCCcCccch--h-hccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCccccch-hhc----c
Confidence 3455555555555211100 0 112456666666665 333211 1223455677777777776654321 112 2
Q ss_pred cCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhH
Q 044749 244 GETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDY 323 (413)
Q Consensus 244 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~ 323 (413)
.+++|+.|+++++.-.... .. .....+++|+.|+++++.........+..+++|++|+++..... ...+
T Consensus 397 ~l~~L~~L~l~~n~l~~~~-~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~ 465 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVT-EF-SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK---------DNTL 465 (606)
T ss_dssp TCTTCCEEECTTSEEESTT-TT-TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG---------GGEE
T ss_pred CCCCCCeeECCCCccCCcc-Ch-hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC---------Ccch
Confidence 3457888887776311000 00 01234678888888776422222334566788888887632111 0011
Q ss_pred HHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCCCchhhhh
Q 044749 324 IAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKDFRPWLQR 402 (413)
Q Consensus 324 ~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~~~~~~ 402 (413)
...+..+++|+.|. ....++...... ...+++|++|+|++|.++...- ..+..+++|+.|+|++|. ++..+..+..
T Consensus 466 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~p~~~~~ 542 (606)
T 3vq2_A 466 SNVFANTTNLTFLDLSKCQLEQISWGV-FDTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNR-IETSKGILQH 542 (606)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSC-CCCEESCGGG
T ss_pred HHhhccCCCCCEEECCCCcCCccChhh-hcccccCCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCc-CcccCHhHhh
Confidence 22344567788877 333454332222 3567889999999888765322 234678889999998886 4555555554
Q ss_pred c
Q 044749 403 A 403 (413)
Q Consensus 403 ~ 403 (413)
+
T Consensus 543 l 543 (606)
T 3vq2_A 543 F 543 (606)
T ss_dssp S
T ss_pred h
Confidence 4
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.17 E-value=2.4e-11 Score=120.78 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=43.4
Q ss_pred hhCCCccccc-CCcccChhhHhh--HhhcCCCCCEEEeecccCChhh-HHHHHhcCCCCCEEEeecccccCCCchhhhhc
Q 044749 328 AACKSLVCLS-GFREITPDYLSA--IYPVCANLTSLNFSYATITADQ-LKPVICNCHKLQIFGPSIQYVMKDFRPWLQRA 403 (413)
Q Consensus 328 ~~~~~L~~L~-~~~~i~~~~l~~--l~~~~~~L~~L~Ls~~~it~~~-l~~l~~~~~~L~~L~l~~c~~i~d~~~~~~~~ 403 (413)
..+++|+.|. ....+++..... ....+++|+.|+|++|.++.-. ....+..+++|+.|++++|. ++..+.+...+
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~ 409 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWP 409 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCC
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCChhhccc
Confidence 4566777766 333555433221 1245677888888887765432 12345677888888888774 34444433333
Q ss_pred cc
Q 044749 404 KN 405 (413)
Q Consensus 404 ~~ 405 (413)
++
T Consensus 410 ~~ 411 (549)
T 2z81_A 410 EK 411 (549)
T ss_dssp TT
T ss_pred cc
Confidence 33
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.17 E-value=7.3e-12 Score=116.21 Aligned_cols=200 Identities=13% Similarity=0.090 Sum_probs=107.5
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+++|+.|+++++.++......+ ..+++|++|+|+++ .++... ....++|++|++++|.+.......+. .
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~l~----~~~~~~L~~L~l~~n~l~~~~~~~~~----~ 143 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISPGAF-APLVKLERLYLSKN-QLKELP----EKMPKTLQELRVHENEITKVRKSVFN----G 143 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSS-CCSBCC----SSCCTTCCEEECCSSCCCBBCHHHHT----T
T ss_pred cCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEEECCCC-cCCccC----hhhcccccEEECCCCcccccCHhHhc----C
Confidence 56777777777765543211111 23466777777766 443211 01135777777777776654422233 3
Q ss_pred CCCcceEEeccccCCCCHHH-HHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhH
Q 044749 245 ETCLESLIFDCVDCAINFEA-LEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDY 323 (413)
Q Consensus 245 ~~~L~~L~L~~~~~~~~~~~-l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~ 323 (413)
+++|+.|+++++. +...+ .......+++|+.|+++++.- ..+.. ...++|++|+++...... ..
T Consensus 144 l~~L~~L~l~~n~--l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~--~~~~~L~~L~l~~n~l~~----------~~ 208 (330)
T 1xku_A 144 LNQMIVVELGTNP--LKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKITK----------VD 208 (330)
T ss_dssp CTTCCEEECCSSC--CCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCS--SCCTTCSEEECTTSCCCE----------EC
T ss_pred CccccEEECCCCc--CCccCcChhhccCCCCcCEEECCCCcc-ccCCc--cccccCCEEECCCCcCCc----------cC
Confidence 4477777777764 11100 001123467777777776521 11100 012677777776322110 11
Q ss_pred HHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccc
Q 044749 324 IAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYV 392 (413)
Q Consensus 324 ~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~ 392 (413)
...+..+++|+.|. ....++......+ ..+++|++|+|++|.++ .+...+..+++|+.|+++++..
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSL-ANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTG-GGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSSCC
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhc-cCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCCCcC
Confidence 12344567788777 3334443322223 45788888888888865 2222346778888888888753
No 39
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.17 E-value=3e-12 Score=117.85 Aligned_cols=205 Identities=16% Similarity=0.118 Sum_probs=107.3
Q ss_pred hCCCCcEEeeeCCccCHHHHHHH-HHhCCCCcEEEeCCCCCCChH--HHHHHHH-hCCcCcEEEccccccccccchhhhc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALL-AESFSGFKELTLVCCEGFGTC--GLAFIAS-KCRQLRVLDLIETEVTDDEVDWISL 240 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l-~~~~~~L~~L~L~~c~~~~~~--~l~~~~~-~~~~L~~L~L~~~~i~~~~~~~l~~ 240 (413)
.+++|++|+++++.++......+ ...+++|++|+|+++ .++.. .+..+.. .+++|++|+|++|.+.......+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~- 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR- 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-
Confidence 45677777777765543211111 133466777777776 44432 1111111 127788888887777654433333
Q ss_pred cCccCCCcceEEeccccCCCCHHHH-HHH-HHhCCCCcEEEccccc--ChHHH-HHHHhcCCCCceecccCcCCCccccc
Q 044749 241 FPEGETCLESLIFDCVDCAINFEAL-EKL-VARSPFLRKLRLNRHV--SIRQL-YRLMVRAPQLTHLGTGKYGPSEVAQR 315 (413)
Q Consensus 241 l~~~~~~L~~L~L~~~~~~~~~~~l-~~l-~~~~~~L~~L~l~~~~--~~~~l-~~ll~~~p~L~~L~l~~~~~~~~~~~ 315 (413)
.+++|++|+++++. ..+...+ ..+ ...+++|++|+++++. .+..+ ..++..+++|++|+++.......
T Consensus 171 ---~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--- 243 (312)
T 1wwl_A 171 ---VFPALSTLDLSDNP-ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA--- 243 (312)
T ss_dssp ---CCSSCCEEECCSCT-TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS---
T ss_pred ---cCCCCCEEECCCCC-cCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc---
Confidence 34478888887775 1211111 111 1346778888887762 12233 34455677888888774221110
Q ss_pred CCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeeccc
Q 044749 316 QGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQY 391 (413)
Q Consensus 316 ~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~ 391 (413)
.. ......+++|+.|. +.+.++ .++... .++|++|+|++|.++.. .. +..+++|+.|++.+.+
T Consensus 244 ---~~---~~~~~~l~~L~~L~Ls~N~l~--~ip~~~--~~~L~~L~Ls~N~l~~~--p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 244 ---AG---APSCDWPSQLNSLNLSFTGLK--QVPKGL--PAKLSVLDLSYNRLDRN--PS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ---CC---CSCCCCCTTCCEEECTTSCCS--SCCSSC--CSEEEEEECCSSCCCSC--CC-TTTSCEEEEEECTTCT
T ss_pred ---cc---hhhhhhcCCCCEEECCCCccC--hhhhhc--cCCceEEECCCCCCCCC--hh-HhhCCCCCEEeccCCC
Confidence 00 00111245666665 332343 111111 16788888888886543 12 4577888888887753
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.17 E-value=4.9e-13 Score=122.78 Aligned_cols=240 Identities=14% Similarity=0.101 Sum_probs=151.4
Q ss_pred CCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHH--HHHHHHhCCCCcEEEeCCCCC
Q 044749 127 FRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDD--LALLAESFSGFKELTLVCCEG 204 (413)
Q Consensus 127 ~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~--l~~l~~~~~~L~~L~L~~c~~ 204 (413)
.++++.|+++++. +.. ++.. ....+++|+.|+++++.++..+ ...+. .+++|++|+|++| .
T Consensus 27 ~~~l~~L~L~~n~-l~~---i~~~-----------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~Ls~n-~ 89 (306)
T 2z66_A 27 PSSATRLELESNK-LQS---LPHG-----------VFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLDLSFN-G 89 (306)
T ss_dssp CTTCCEEECCSSC-CCC---CCTT-----------TTTTCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEECCSC-S
T ss_pred CCCCCEEECCCCc-cCc---cCHh-----------HhhccccCCEEECCCCccCcccCcccccc-cccccCEEECCCC-c
Confidence 4788999988753 221 2211 1126789999999999776321 11122 3689999999998 5
Q ss_pred CChHHHHHHHHhCCcCcEEEccccccccccc-hhhhccCccCCCcceEEeccccCC-CCHHHHHHHHHhCCCCcEEEccc
Q 044749 205 FGTCGLAFIASKCRQLRVLDLIETEVTDDEV-DWISLFPEGETCLESLIFDCVDCA-INFEALEKLVARSPFLRKLRLNR 282 (413)
Q Consensus 205 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~-~~l~~l~~~~~~L~~L~L~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~ 282 (413)
+.. +......+++|++|++++|.+.+... ..+. .+++|+.|+++++... +... ....+++|+.|++++
T Consensus 90 i~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 90 VIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL----SLRNLIYLDISHTHTRVAFNG----IFNGLSSLEVLKMAG 159 (306)
T ss_dssp EEE--EEEEEETCTTCCEEECTTSEEESSTTTTTTT----TCTTCCEEECTTSCCEECSTT----TTTTCTTCCEEECTT
T ss_pred ccc--ChhhcCCCCCCCEEECCCCcccccccchhhh----hccCCCEEECCCCcCCccchh----hcccCcCCCEEECCC
Confidence 442 11113468999999999998776441 1233 4569999999988411 1111 223579999999998
Q ss_pred ccChH-HHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEE
Q 044749 283 HVSIR-QLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSL 360 (413)
Q Consensus 283 ~~~~~-~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L 360 (413)
+.... .+...+..+++|++|+++...... .....+..+++|+.|. ..+.++......+ ..+++|++|
T Consensus 160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L 228 (306)
T 2z66_A 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQ----------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVL 228 (306)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCE----------ECTTTTTTCTTCCEEECTTSCCSBCCSGGG-TTCTTCCEE
T ss_pred CccccccchhHHhhCcCCCEEECCCCCcCC----------cCHHHhcCCCCCCEEECCCCccCccChhhc-cCcccCCEe
Confidence 73222 234456678999999998432221 1112345678888887 3334443322223 567999999
Q ss_pred EeecccCChhhHHHHHhcCC-CCCEEEeecccccCC-----Cchhhhhccc
Q 044749 361 NFSYATITADQLKPVICNCH-KLQIFGPSIQYVMKD-----FRPWLQRAKN 405 (413)
Q Consensus 361 ~Ls~~~it~~~l~~l~~~~~-~L~~L~l~~c~~i~d-----~~~~~~~~~~ 405 (413)
+|++|.++...... +..++ +|+.|++++++...+ +..|+++.+.
T Consensus 229 ~L~~N~l~~~~~~~-~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~ 278 (306)
T 2z66_A 229 DYSLNHIMTSKKQE-LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 278 (306)
T ss_dssp ECTTSCCCBCSSSS-CCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGG
T ss_pred ECCCCCCcccCHHH-HHhhhccCCEEEccCCCeecccChHHHHHHHHhhhh
Confidence 99999976644333 34564 999999999765333 3566665543
No 41
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.16 E-value=2.5e-12 Score=118.75 Aligned_cols=237 Identities=13% Similarity=0.073 Sum_probs=138.4
Q ss_pred hHHHhcCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeC
Q 044749 121 DRARGRFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLV 200 (413)
Q Consensus 121 ~~l~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~ 200 (413)
..+...+++++.|+++++.- .. ... .....+++|+.|+++++.++... . ...+++|++|+++
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l-~~----------~~~----~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPL-SQ----------ISA----ADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLN 88 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCC-CC----------CCH----HHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECC
T ss_pred HHHhccCCCCCEEECcCCcc-Cc----------CCH----HHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECc
Confidence 34455566777877776431 11 011 11236677888888777554211 1 2334678888887
Q ss_pred CCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEc
Q 044749 201 CCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRL 280 (413)
Q Consensus 201 ~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l 280 (413)
+| .++.. ..+++|++|++++|.++... .. .+++|+.|+++++. ++... ......+++|+.|++
T Consensus 89 ~n-~l~~l------~~~~~L~~L~l~~n~l~~~~---~~----~~~~L~~L~l~~N~--l~~~~-~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 89 NN-YVQEL------LVGPSIETLHAANNNISRVS---CS----RGQGKKNIYLANNK--ITMLR-DLDEGCRSRVQYLDL 151 (317)
T ss_dssp SS-EEEEE------EECTTCCEEECCSSCCSEEE---EC----CCSSCEEEECCSSC--CCSGG-GBCTGGGSSEEEEEC
T ss_pred CC-ccccc------cCCCCcCEEECCCCccCCcC---cc----ccCCCCEEECCCCC--CCCcc-chhhhccCCCCEEEC
Confidence 77 44421 13577888888887766543 22 24589999998874 22100 001234688999999
Q ss_pred ccccChH-HHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCC
Q 044749 281 NRHVSIR-QLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLT 358 (413)
Q Consensus 281 ~~~~~~~-~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~ 358 (413)
+++.-.. ....+...+++|++|+++........ ....+++|+.|. ..+.++... .-...+++|+
T Consensus 152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------~~~~l~~L~~L~Ls~N~l~~l~--~~~~~l~~L~ 217 (317)
T 3o53_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK------------GQVVFAKLKTLDLSSNKLAFMG--PEFQSAAGVT 217 (317)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE------------CCCCCTTCCEEECCSSCCCEEC--GGGGGGTTCS
T ss_pred CCCCCCcccHHHHhhccCcCCEEECCCCcCcccc------------cccccccCCEEECCCCcCCcch--hhhcccCccc
Confidence 8863211 12233346789999998843322100 011367788887 333444321 1134678999
Q ss_pred EEEeecccCChhhHHHHHhcCCCCCEEEeeccccc-CCCchhhhhcccccc
Q 044749 359 SLNFSYATITADQLKPVICNCHKLQIFGPSIQYVM-KDFRPWLQRAKNFVN 408 (413)
Q Consensus 359 ~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i-~d~~~~~~~~~~~~~ 408 (413)
+|+|++|.++. +...+..+++|+.|++++++.. .....|+..++++..
T Consensus 218 ~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~ 266 (317)
T 3o53_A 218 WISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266 (317)
T ss_dssp EEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHH
T ss_pred EEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceE
Confidence 99999998763 2333567889999999988765 345566665555443
No 42
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.15 E-value=1.7e-12 Score=119.81 Aligned_cols=225 Identities=12% Similarity=0.105 Sum_probs=152.4
Q ss_pred hHHHhcCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeC
Q 044749 121 DRARGRFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLV 200 (413)
Q Consensus 121 ~~l~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~ 200 (413)
...+..+++++.|+++++.-..... ...+++|+.|+++++.++.-. ..++|+.|+++
T Consensus 51 ~~~~~~l~~L~~L~Ls~n~l~~~~~-----------------~~~l~~L~~L~Ls~n~l~~l~------~~~~L~~L~l~ 107 (317)
T 3o53_A 51 AADLAPFTKLELLNLSSNVLYETLD-----------------LESLSTLRTLDLNNNYVQELL------VGPSIETLHAA 107 (317)
T ss_dssp HHHHTTCTTCCEEECTTSCCEEEEE-----------------ETTCTTCCEEECCSSEEEEEE------ECTTCCEEECC
T ss_pred HHHhhCCCcCCEEECCCCcCCcchh-----------------hhhcCCCCEEECcCCcccccc------CCCCcCEEECC
Confidence 4567889999999999764221111 126789999999999765311 23789999999
Q ss_pred CCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEc
Q 044749 201 CCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRL 280 (413)
Q Consensus 201 ~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l 280 (413)
+| .++... ...+++|++|++++|.++......+.. +++|+.|+++++. +.......+...+++|+.|++
T Consensus 108 ~n-~l~~~~----~~~~~~L~~L~l~~N~l~~~~~~~~~~----l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 108 NN-NISRVS----CSRGQGKKNIYLANNKITMLRDLDEGC----RSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp SS-CCSEEE----ECCCSSCEEEECCSSCCCSGGGBCTGG----GSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEEC
T ss_pred CC-ccCCcC----ccccCCCCEEECCCCCCCCccchhhhc----cCCCCEEECCCCC--CCcccHHHHhhccCcCCEEEC
Confidence 98 665432 234789999999999987654333433 4599999999884 322122223345799999999
Q ss_pred ccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCE
Q 044749 281 NRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTS 359 (413)
Q Consensus 281 ~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~ 359 (413)
+++. +..+. ....+++|++|+++...... ... .+..+++|+.|. ..+.++. ++.....+++|+.
T Consensus 177 ~~N~-l~~~~-~~~~l~~L~~L~Ls~N~l~~-------l~~----~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~ 241 (317)
T 3o53_A 177 QYNF-IYDVK-GQVVFAKLKTLDLSSNKLAF-------MGP----EFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEH 241 (317)
T ss_dssp TTSC-CCEEE-CCCCCTTCCEEECCSSCCCE-------ECG----GGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCE
T ss_pred CCCc-Ccccc-cccccccCCEEECCCCcCCc-------chh----hhcccCcccEEECcCCcccc--hhhHhhcCCCCCE
Confidence 9873 11111 11247899999998433221 111 145678899888 4445552 3333456799999
Q ss_pred EEeecccCChhhHHHHHhcCCCCCEEEeecccccC
Q 044749 360 LNFSYATITADQLKPVICNCHKLQIFGPSIQYVMK 394 (413)
Q Consensus 360 L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~ 394 (413)
|+|++|.++...+..++..+++|+.|++.++..++
T Consensus 242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred EEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 99999999866778888899999999888765543
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.15 E-value=6.5e-12 Score=119.39 Aligned_cols=132 Identities=14% Similarity=0.183 Sum_probs=83.4
Q ss_pred cCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCC
Q 044749 126 RFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGF 205 (413)
Q Consensus 126 ~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~ 205 (413)
.+++++.+++.++. +.. ++ ..+...+++|+.|+++++.+++.....+ ..+++|++|+|++| .+
T Consensus 43 ~l~~l~~l~l~~~~-l~~---l~-----------~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n-~l 105 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRK---LP-----------AALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFN-AI 105 (390)
T ss_dssp GGCCCSEEEEESCE-ESE---EC-----------THHHHHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSS-CC
T ss_pred ccCCceEEEecCCc-hhh---CC-----------hhHhcccccCcEEECCCCcccccChhhc-cCCCCcCEEECCCC-CC
Confidence 45677777777542 111 11 1233478999999999886654221122 33578999999988 55
Q ss_pred ChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccC-CCCHHHHHHHHHhCCCCcEEEcccc
Q 044749 206 GTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDC-AINFEALEKLVARSPFLRKLRLNRH 283 (413)
Q Consensus 206 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~ 283 (413)
+... ......+++|++|++++|.++.-....+. .+++|++|+++++.- .+.... ...+++|+.|+++++
T Consensus 106 ~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~----~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 106 RYLP-PHVFQNVPLLTVLVLERNDLSSLPRGIFH----NTPKLTTLSMSNNNLERIEDDT----FQATTSLQNLQLSSN 175 (390)
T ss_dssp CCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCCBCCTTT----TSSCTTCCEEECCSS
T ss_pred CcCC-HHHhcCCCCCCEEECCCCccCcCCHHHhc----CCCCCcEEECCCCccCccChhh----ccCCCCCCEEECCCC
Confidence 4321 11235689999999999987753322222 456999999998841 111111 235789999999986
No 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.15 E-value=4.2e-10 Score=111.75 Aligned_cols=174 Identities=11% Similarity=0.049 Sum_probs=74.8
Q ss_pred HhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHh
Q 044749 215 SKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMV 294 (413)
Q Consensus 215 ~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~ 294 (413)
..+++|++|++++|.+.+..+... .....+++|+.|+++++. -............+++|+.|+++++. +..+...+.
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~ 407 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNS-ACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQ 407 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHH-TCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCC
T ss_pred hcCccccEEEccCCccccccccch-hhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCC-CccCChhhc
Confidence 356666666666666554321111 111234466666666664 11111111223446666666666652 122222233
Q ss_pred cCCCCceecccCcCCCcccccCC-------CChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeeccc
Q 044749 295 RAPQLTHLGTGKYGPSEVAQRQG-------DTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYAT 366 (413)
Q Consensus 295 ~~p~L~~L~l~~~~~~~~~~~~g-------~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~ 366 (413)
.+++|++|+++.......+.... .....+......+++|+.|. +.+.++ .++.. ..+++|+.|+|++|.
T Consensus 408 ~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~--~ip~~-~~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 408 WPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK--TLPDA-SLFPVLLVMKISRNQ 484 (549)
T ss_dssp CCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS--SCCCG-GGCTTCCEEECCSSC
T ss_pred ccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC--cCCCc-ccCccCCEEecCCCc
Confidence 44556666655322110000000 00000000012345555555 222333 22222 245666666666666
Q ss_pred CChhhHHHHHhcCCCCCEEEeecccccCC
Q 044749 367 ITADQLKPVICNCHKLQIFGPSIQYVMKD 395 (413)
Q Consensus 367 it~~~l~~l~~~~~~L~~L~l~~c~~i~d 395 (413)
++... ...+..+++|+.|++++++...+
T Consensus 485 l~~~~-~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 485 LKSVP-DGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CCCCC-TTGGGGCTTCCEEECCSSCBCCC
T ss_pred cCCcC-HHHHhcCcccCEEEecCCCccCC
Confidence 54321 12235666777777766654433
No 45
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.15 E-value=4.2e-12 Score=120.72 Aligned_cols=202 Identities=13% Similarity=0.071 Sum_probs=87.3
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccC--
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFP-- 242 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~-- 242 (413)
.+++|+.|+++++.++.-. ..+...+++|+.|++++| .+.... ......+++|++|++++|.++......+..+.
T Consensus 115 ~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L 191 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNN-NLERIE-DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 191 (390)
T ss_dssp TCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCBCC-TTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEE
T ss_pred CCCCCCEEECCCCccCcCC-HHHhcCCCCCcEEECCCC-ccCccC-hhhccCCCCCCEEECCCCcCCcccccccccccee
Confidence 4566666666666444210 011123456666666665 333211 11123466667777766665543311111100
Q ss_pred ----------ccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcc
Q 044749 243 ----------EGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEV 312 (413)
Q Consensus 243 ----------~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~ 312 (413)
...++|++|+++++. +.... ....++|+.|+++++.- ... ..+..+++|++|+++......
T Consensus 192 ~l~~n~l~~~~~~~~L~~L~l~~n~--l~~~~----~~~~~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~Ls~n~l~~- 262 (390)
T 3o6n_A 192 NVSYNLLSTLAIPIAVEELDASHNS--INVVR----GPVNVELTILKLQHNNL-TDT-AWLLNYPGLVEVDLSYNELEK- 262 (390)
T ss_dssp ECCSSCCSEEECCSSCSEEECCSSC--CCEEE----CCCCSSCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCE-
T ss_pred ecccccccccCCCCcceEEECCCCe--eeecc----ccccccccEEECCCCCC-ccc-HHHcCCCCccEEECCCCcCCC-
Confidence 011123333333321 00000 00124555555555421 111 234556777777776322110
Q ss_pred cccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeeccc
Q 044749 313 AQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQY 391 (413)
Q Consensus 313 ~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~ 391 (413)
.....+..+++|+.|. ....++. ++.....+++|++|+|++|.++. +..-+..+++|+.|++.++.
T Consensus 263 ---------~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 263 ---------IMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp ---------EESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSC
T ss_pred ---------cChhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCccee--cCccccccCcCCEEECCCCc
Confidence 0112233456666665 2223332 11222345667777776666442 11113445666666666654
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.14 E-value=4.5e-12 Score=127.33 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=33.3
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDD 233 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~ 233 (413)
.+++|+.|+|+++.++.-. ..+...+++|+.|+|++| .++... ......+++|++|+|++|.++..
T Consensus 121 ~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 121 NVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNN-NLERIE-DDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp TCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECTTSCCSBC
T ss_pred CCCCCCEEEeeCCCCCCCC-HHHhccCCCCCEEEeeCC-cCCCCC-hhhhhcCCcCcEEECcCCCCCCc
Confidence 4566666666666544210 011123456666666666 443211 11123466677777766665543
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.14 E-value=5.7e-13 Score=122.81 Aligned_cols=235 Identities=13% Similarity=0.084 Sum_probs=135.1
Q ss_pred hHHHhcCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeC
Q 044749 121 DRARGRFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLV 200 (413)
Q Consensus 121 ~~l~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~ 200 (413)
...+..+++++.|+++++..+.. .+|..+ ..+++|+.|+++++.++......+ ..+++|++|+|+
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~--~~p~~l------------~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls 133 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVG--PIPPAI------------AKLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFS 133 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEES--CCCGGG------------GGCTTCSEEEEEEECCEEECCGGG-GGCTTCCEEECC
T ss_pred ChhHhCCCCCCeeeCCCCCcccc--cCChhH------------hcCCCCCEEECcCCeeCCcCCHHH-hCCCCCCEEeCC
Confidence 34566788888888885222221 122111 267888899888876542211122 335788999888
Q ss_pred CCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCC-CCHHHHHHHHHhCCCCcEEE
Q 044749 201 CCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCA-INFEALEKLVARSPFLRKLR 279 (413)
Q Consensus 201 ~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~-~~~~~l~~l~~~~~~L~~L~ 279 (413)
++ .++.. +......+++|++|++++|.+++..+..+..+. +.|+.|+++++.-. .....+ ..++ |+.|+
T Consensus 134 ~N-~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~---~~L~~L~L~~N~l~~~~~~~~----~~l~-L~~L~ 203 (313)
T 1ogq_A 134 YN-ALSGT-LPPSISSLPNLVGITFDGNRISGAIPDSYGSFS---KLFTSMTISRNRLTGKIPPTF----ANLN-LAFVD 203 (313)
T ss_dssp SS-EEESC-CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC---TTCCEEECCSSEEEEECCGGG----GGCC-CSEEE
T ss_pred CC-ccCCc-CChHHhcCCCCCeEECcCCcccCcCCHHHhhhh---hcCcEEECcCCeeeccCChHH----hCCc-ccEEE
Confidence 87 44321 112235688899999988887755433333322 37888888877311 111111 2233 88888
Q ss_pred cccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCC
Q 044749 280 LNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLT 358 (413)
Q Consensus 280 l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~ 358 (413)
++++.-.......+..+++|+.|+++...... ... .+..+++|+.|. ..+.+++. ++.....+++|+
T Consensus 204 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~~----~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~ 271 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF-------DLG----KVGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLH 271 (313)
T ss_dssp CCSSEEEECCGGGCCTTSCCSEEECCSSEECC-------BGG----GCCCCTTCCEEECCSSCCEEC-CCGGGGGCTTCC
T ss_pred CcCCcccCcCCHHHhcCCCCCEEECCCCceee-------ecC----cccccCCCCEEECcCCcccCc-CChHHhcCcCCC
Confidence 88763222233445668888888887422110 011 134467788877 33344432 223335678889
Q ss_pred EEEeecccCChhhHHHHHhcCCCCCEEEeecccccC
Q 044749 359 SLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMK 394 (413)
Q Consensus 359 ~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~ 394 (413)
+|+|++|.++... ... ..+++|+.|++.+.+.+.
T Consensus 272 ~L~Ls~N~l~~~i-p~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 272 SLNVSFNNLCGEI-PQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EEECCSSEEEEEC-CCS-TTGGGSCGGGTCSSSEEE
T ss_pred EEECcCCcccccC-CCC-ccccccChHHhcCCCCcc
Confidence 9999888865321 122 567788888887766443
No 48
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.13 E-value=9.4e-13 Score=121.30 Aligned_cols=203 Identities=19% Similarity=0.194 Sum_probs=127.8
Q ss_pred hCCCCcEEEeCCCCCCChHHHHHH-HHhCCcCcEEEccccccccccchhhhccCc-cCCCcceEEeccccC-CCCHHHHH
Q 044749 190 SFSGFKELTLVCCEGFGTCGLAFI-ASKCRQLRVLDLIETEVTDDEVDWISLFPE-GETCLESLIFDCVDC-AINFEALE 266 (413)
Q Consensus 190 ~~~~L~~L~L~~c~~~~~~~l~~~-~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~-~~~~L~~L~L~~~~~-~~~~~~l~ 266 (413)
.+++|++|+|++| .++......+ ...+++|++|+|++|.+++. +..+..+.. ..++|++|+++++.- .+....
T Consensus 93 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~-- 168 (312)
T 1wwl_A 93 GISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-- 168 (312)
T ss_dssp TTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT--
T ss_pred CcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHH--
Confidence 3589999999998 5543211111 25689999999999998876 344554421 125999999998841 111111
Q ss_pred HHHHhCCCCcEEEcccccChHH--HHHHH--hcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcc
Q 044749 267 KLVARSPFLRKLRLNRHVSIRQ--LYRLM--VRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFRE 341 (413)
Q Consensus 267 ~l~~~~~~L~~L~l~~~~~~~~--l~~ll--~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~ 341 (413)
...+++|+.|+++++...+. +...+ ..+++|++|+++..... .........+..+++|+.|. +.+.
T Consensus 169 --~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 169 --VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME-------TPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp --CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC-------CHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred --hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc-------chHHHHHHHHhcCCCCCEEECCCCc
Confidence 23579999999998753322 22233 67899999999843221 01122334556789999998 4445
Q ss_pred cChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCCCchhhhhccccccccc
Q 044749 342 ITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKDFRPWLQRAKNFVNFGF 411 (413)
Q Consensus 342 i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~~~~~~~~~~~~~~~ 411 (413)
+++.........+++|++|+|++|.++ .+..-+ .++|+.|+++++. +++.+. +..++++..+.+
T Consensus 240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~--~~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 240 LRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKGL--PAKLSVLDLSYNR-LDRNPS-PDELPQVGNLSL 303 (312)
T ss_dssp CCSSCCCSCCCCCTTCCEEECTTSCCS--SCCSSC--CSEEEEEECCSSC-CCSCCC-TTTSCEEEEEEC
T ss_pred CCcccchhhhhhcCCCCEEECCCCccC--hhhhhc--cCCceEEECCCCC-CCCChh-HhhCCCCCEEec
Confidence 554331122234689999999999976 222211 2799999999975 455443 556666555543
No 49
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.13 E-value=3.8e-12 Score=131.63 Aligned_cols=35 Identities=14% Similarity=-0.000 Sum_probs=16.7
Q ss_pred hCCCCcEEEcccccChHHHHHHHhcCCCCceeccc
Q 044749 271 RSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTG 305 (413)
Q Consensus 271 ~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~ 305 (413)
.+++|+.|+++++.-...+...+..+++|+.|++.
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 450 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECC
Confidence 35566666666542111122233445556666555
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.13 E-value=7e-13 Score=121.74 Aligned_cols=183 Identities=14% Similarity=0.067 Sum_probs=85.0
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+++|+.|+++++.++. +..-...+++|+.|+++++ .++..........+++|++|++++|.+.......+. .
T Consensus 76 ~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~ 148 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN----G 148 (306)
T ss_dssp SCSCCCEEECCSCSEEE--EEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT----T
T ss_pred cccccCEEECCCCcccc--ChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcc----c
Confidence 45667777776664431 0000122456777777665 332211111234466777777776665543322222 3
Q ss_pred CCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHH
Q 044749 245 ETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYI 324 (413)
Q Consensus 245 ~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~ 324 (413)
+++|++|+++++. +....+......+++|+.|+++++.-.......+..+++|++|+++...... ...
T Consensus 149 l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~~--- 216 (306)
T 2z66_A 149 LSSLEVLKMAGNS--FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-------LDT--- 216 (306)
T ss_dssp CTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-------CCS---
T ss_pred CcCCCEEECCCCc--cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-------cCh---
Confidence 3467777776653 1110000112235667777776652111112334456677777766322110 000
Q ss_pred HHHhhCCCccccc-CCcccChhhHhhHhhcC-CCCCEEEeecccC
Q 044749 325 AAFAACKSLVCLS-GFREITPDYLSAIYPVC-ANLTSLNFSYATI 367 (413)
Q Consensus 325 ~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~-~~L~~L~Ls~~~i 367 (413)
..+..+++|+.|. +.+.++......+ ..+ ++|+.|+|++|.+
T Consensus 217 ~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 217 FPYKCLNSLQVLDYSLNHIMTSKKQEL-QHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCSSSSC-CCCCTTCCEEECTTCCE
T ss_pred hhccCcccCCEeECCCCCCcccCHHHH-HhhhccCCEEEccCCCe
Confidence 0123456666665 3334433322222 223 4677777777663
No 51
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.12 E-value=1.4e-11 Score=127.73 Aligned_cols=56 Identities=13% Similarity=0.320 Sum_probs=31.2
Q ss_pred cCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeec------ccccCCCchhhhhcccccccc
Q 044749 353 VCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSI------QYVMKDFRPWLQRAKNFVNFG 410 (413)
Q Consensus 353 ~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~------c~~i~d~~~~~~~~~~~~~~~ 410 (413)
.+++|+.|+|++|.++. +..-+..+++|+.|+|++ |...+..+.++..++++..+.
T Consensus 751 ~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~ 812 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812 (876)
T ss_dssp TCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred cCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEE
Confidence 56677777777776553 222245667777777755 333334444555555554443
No 52
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.11 E-value=4.9e-12 Score=123.55 Aligned_cols=131 Identities=16% Similarity=0.089 Sum_probs=87.9
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+++|++|+|+++.++......+ ..+++|++|+|+++ .++... .....++++|++|+|++|.+.......+. .
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----~ 126 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRSN-RLKLIP-LGVFTGLSNLTKLDISENKIVILLDYMFQ----D 126 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSS-CCCSCC-TTSSTTCTTCCEEECTTSCCCEECTTTTT----T
T ss_pred CCCCCCEEECCCCccCEeChhhh-hCCccCCEEECCCC-cCCccC-cccccCCCCCCEEECCCCccccCChhHcc----c
Confidence 67999999999987654222222 24588999999988 554321 11235689999999999988765422233 4
Q ss_pred CCCcceEEeccccC-CCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccC
Q 044749 245 ETCLESLIFDCVDC-AINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGK 306 (413)
Q Consensus 245 ~~~L~~L~L~~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~ 306 (413)
+++|++|++.++.- .+.... ...+++|+.|+++++.-.......+..+++|+.|++..
T Consensus 127 l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVYISHRA----FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp CTTCCEEEECCTTCCEECTTS----STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred cccCCEEECCCCccceeChhh----ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence 56999999998741 111111 23578999999998732122234567889999999874
No 53
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.11 E-value=9.5e-10 Score=92.85 Aligned_cols=126 Identities=15% Similarity=0.098 Sum_probs=100.1
Q ss_pred chHHHHHHHhhCCCCcEEeeeCC-ccCHHHHHHHHHhC---CCCcEEEeCCCCCCChHHHHHH---HHhCCcCcEEEccc
Q 044749 155 FGPWVCVLANAYPWLEKVYLKRM-SITDDDLALLAESF---SGFKELTLVCCEGFGTCGLAFI---ASKCRQLRVLDLIE 227 (413)
Q Consensus 155 ~~~~l~~l~~~~~~L~~L~L~~~-~l~~~~l~~l~~~~---~~L~~L~L~~c~~~~~~~l~~~---~~~~~~L~~L~L~~ 227 (413)
+...+..+...++.|++|+|+++ .+++.++..++..+ ++|++|+|++| .+++.+...+ ....+.|++|+|++
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 45666777778999999999999 99999988887764 56999999999 8998876544 44678999999999
Q ss_pred cccccccchhhhccCccCCCcceEEe--ccccCCCCHHHHHHHH---HhCCCCcEEEcccc
Q 044749 228 TEVTDDEVDWISLFPEGETCLESLIF--DCVDCAINFEALEKLV---ARSPFLRKLRLNRH 283 (413)
Q Consensus 228 ~~i~~~~~~~l~~l~~~~~~L~~L~L--~~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~ 283 (413)
|.|++++...+......+++|++|+| .++. +++++...+. ..+++|++|+++++
T Consensus 103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~--i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 103 NFISGSGILALVEALQSNTSLIELRIDNQSQP--LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC--CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CcCCHHHHHHHHHHHHhCCCceEEEecCCCCC--CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 99999987766666667789999999 5564 7777754443 34578888888775
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.10 E-value=1.2e-10 Score=112.83 Aligned_cols=177 Identities=16% Similarity=0.119 Sum_probs=86.8
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+++|+.|+++++.++... ...+++|++|++++| .++... ...+++|++|++++|.++.-. +. .
T Consensus 83 ~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~l~~l~---l~----~ 146 (457)
T 3bz5_A 83 QNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNTLTEID---VS----H 146 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTSCCSCCC---CT----T
T ss_pred cCCCCCEEECcCCCCceee----cCCCCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCCccceec---cc----c
Confidence 4466666666666544321 123456666666666 443321 344666666666666655422 22 3
Q ss_pred CCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHH
Q 044749 245 ETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYI 324 (413)
Q Consensus 245 ~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~ 324 (413)
+++|+.|+++++. .++... ...+++|+.|+++++. +..+. +..+++|+.|+++..... ..
T Consensus 147 l~~L~~L~l~~n~-~~~~~~----~~~l~~L~~L~ls~n~-l~~l~--l~~l~~L~~L~l~~N~l~-------~~----- 206 (457)
T 3bz5_A 147 NTQLTELDCHLNK-KITKLD----VTPQTQLTTLDCSFNK-ITELD--VSQNKLLNRLNCDTNNIT-------KL----- 206 (457)
T ss_dssp CTTCCEEECTTCS-CCCCCC----CTTCTTCCEEECCSSC-CCCCC--CTTCTTCCEEECCSSCCS-------CC-----
T ss_pred CCcCCEEECCCCC-cccccc----cccCCcCCEEECCCCc-cceec--cccCCCCCEEECcCCcCC-------ee-----
Confidence 4466666666652 111101 1235666666666642 11121 445666666666532211 00
Q ss_pred HHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEE
Q 044749 325 AAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFG 386 (413)
Q Consensus 325 ~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~ 386 (413)
.+..+++|+.|. ....++. ++ ...+++|+.|++++|.++... ...+++|+.|+
T Consensus 207 -~l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~ 260 (457)
T 3bz5_A 207 -DLNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLH 260 (457)
T ss_dssp -CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEE
T ss_pred -ccccCCCCCEEECcCCcccc--cC--ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEe
Confidence 133455666665 3334433 22 235566777777766654432 23455554443
No 55
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.10 E-value=8.4e-12 Score=114.78 Aligned_cols=206 Identities=16% Similarity=0.102 Sum_probs=100.9
Q ss_pred CCCCcEEeeeCCccCHHHHHHHH-HhCCCCcEEEeCCCCCCChHH--HH-HHHHhCCcCcEEEccccccccccchhhhcc
Q 044749 166 YPWLEKVYLKRMSITDDDLALLA-ESFSGFKELTLVCCEGFGTCG--LA-FIASKCRQLRVLDLIETEVTDDEVDWISLF 241 (413)
Q Consensus 166 ~~~L~~L~L~~~~l~~~~l~~l~-~~~~~L~~L~L~~c~~~~~~~--l~-~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l 241 (413)
+++|++|+++++.++......+. ..+++|+.|+|+++ .++... +. .....+++|++|+|++|.+.......+.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-- 166 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR-- 166 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC--
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc--
Confidence 35577777776654432211111 23456777777776 444311 11 1112567777777777776544322232
Q ss_pred CccCCCcceEEeccccCCCCHHHHHH--HHHhCCCCcEEEcccccC--hHHH-HHHHhcCCCCceecccCcCCCcccccC
Q 044749 242 PEGETCLESLIFDCVDCAINFEALEK--LVARSPFLRKLRLNRHVS--IRQL-YRLMVRAPQLTHLGTGKYGPSEVAQRQ 316 (413)
Q Consensus 242 ~~~~~~L~~L~L~~~~~~~~~~~l~~--l~~~~~~L~~L~l~~~~~--~~~l-~~ll~~~p~L~~L~l~~~~~~~~~~~~ 316 (413)
.+++|++|+|+++. -.+..++.. ....+++|++|++++|.- +... ..++..+++|++|+++.......
T Consensus 167 --~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~---- 239 (310)
T 4glp_A 167 --AFPALTSLDLSDNP-GLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT---- 239 (310)
T ss_dssp --CCTTCCEEECCSCT-TCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC----
T ss_pred --cCCCCCEEECCCCC-CccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc----
Confidence 34477777777764 122222211 112456777777776521 1222 22345677777777763221110
Q ss_pred CCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeeccc
Q 044749 317 GDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQY 391 (413)
Q Consensus 317 g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~ 391 (413)
....+ ......++|+.|. +.+.++ .++.. .+++|++|+|++|.++.-. ....+++|+.|++++.+
T Consensus 240 --~p~~~-~~~~~~~~L~~L~Ls~N~l~--~lp~~--~~~~L~~L~Ls~N~l~~~~---~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 240 --VNPSA-PRCMWSSALNSLNLSFAGLE--QVPKG--LPAKLRVLDLSSNRLNRAP---QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp --CCSCC-SSCCCCTTCCCEECCSSCCC--SCCSC--CCSCCSCEECCSCCCCSCC---CTTSCCCCSCEECSSTT
T ss_pred --chhhH-HhccCcCcCCEEECCCCCCC--chhhh--hcCCCCEEECCCCcCCCCc---hhhhCCCccEEECcCCC
Confidence 00000 0001124666665 333443 11111 1267778888777765421 13566777777776643
No 56
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.10 E-value=3.2e-10 Score=111.89 Aligned_cols=149 Identities=13% Similarity=0.123 Sum_probs=75.3
Q ss_pred ccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEccccc--ChHHHHHHHhcCCCCceecccCcCCCcccccCCCCh
Q 044749 243 EGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHV--SIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTE 320 (413)
Q Consensus 243 ~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~ 320 (413)
..+++|++|+++++. ++..... ....+++|+.|+++++. .+..+...+..+++|++|+++....... ..
T Consensus 321 ~~l~~L~~L~Ls~n~--l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~------l~ 391 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL--LTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD------EK 391 (520)
T ss_dssp SSCCCCCEEECCSSC--CCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC------GG
T ss_pred hhCCcccEEEeECCc--cChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc------cc
Confidence 345566666666663 2110111 11235667777776652 2224445566677777777763221100 00
Q ss_pred hhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCCCchh
Q 044749 321 PDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKDFRPW 399 (413)
Q Consensus 321 ~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~~~ 399 (413)
. ..+..+++|+.|. +...+++.....+ .++|+.|+|++|.++ .+..-+..+++|+.|++++|. +++.+..
T Consensus 392 ~---~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~-l~~l~~~ 462 (520)
T 2z7x_B 392 K---GDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQ-LKSVPDG 462 (520)
T ss_dssp G---CSCCCCTTCCEEECCSSCCCGGGGGSC---CTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSC-CCCCCTT
T ss_pred c---chhccCccCCEEECcCCCCCcchhhhh---cccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCc-CCccCHH
Confidence 0 0123345666665 3334443222211 157888888887765 233323477888888888874 3444443
Q ss_pred -hhhccccccc
Q 044749 400 -LQRAKNFVNF 409 (413)
Q Consensus 400 -~~~~~~~~~~ 409 (413)
+..++++..+
T Consensus 463 ~~~~l~~L~~L 473 (520)
T 2z7x_B 463 IFDRLTSLQKI 473 (520)
T ss_dssp TTTTCTTCCEE
T ss_pred HhccCCcccEE
Confidence 4445554444
No 57
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.10 E-value=1.1e-10 Score=116.48 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=8.8
Q ss_pred HHhcCCCccEEEecCC
Q 044749 123 ARGRFRRVRSVVLKGK 138 (413)
Q Consensus 123 l~~~~~~l~~l~l~~~ 138 (413)
.+..+++++.|+++++
T Consensus 71 ~~~~l~~L~~L~Ls~N 86 (562)
T 3a79_B 71 DISFLSELRVLRLSHN 86 (562)
T ss_dssp GTTTCTTCCEEECCSC
T ss_pred hhccCCCccEEECCCC
Confidence 3445556666666544
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.09 E-value=5.4e-12 Score=127.03 Aligned_cols=206 Identities=17% Similarity=0.103 Sum_probs=136.2
Q ss_pred hCCCCcEEeeeCCccCHHH-HHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccc-hhhhccC
Q 044749 165 AYPWLEKVYLKRMSITDDD-LALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEV-DWISLFP 242 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~-l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~-~~l~~l~ 242 (413)
.+++|+.|+++++.++... +......+++|++|++++| .+.... .....+++|++|++++|.+..... ..+.
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--- 421 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFL--- 421 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEEC--CCCTTCTTCCEEECTTSEEESTTTTTTTT---
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccch--hhccCCCCCCeeECCCCccCCccChhhhh---
Confidence 6799999999998654321 0112345689999999998 444321 224568999999999998776542 2233
Q ss_pred ccCCCcceEEeccccCCC-CHHHHHHHHHhCCCCcEEEcccccChH-HHHHHHhcCCCCceecccCcCCCcccccCCCCh
Q 044749 243 EGETCLESLIFDCVDCAI-NFEALEKLVARSPFLRKLRLNRHVSIR-QLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTE 320 (413)
Q Consensus 243 ~~~~~L~~L~L~~~~~~~-~~~~l~~l~~~~~~L~~L~l~~~~~~~-~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~ 320 (413)
.+++|+.|+++++.... ... ....+++|+.|+++++.-.. .+...+..+++|+.|+++.....
T Consensus 422 -~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~---------- 486 (606)
T 3vq2_A 422 -SLEKLLYLDISYTNTKIDFDG----IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE---------- 486 (606)
T ss_dssp -TCTTCCEEECTTSCCEECCTT----TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC----------
T ss_pred -ccccCCEEECcCCCCCccchh----hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC----------
Confidence 45699999999984111 111 12357999999999874222 13445677899999999843221
Q ss_pred hhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCC-CCCEEEeecccccC
Q 044749 321 PDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCH-KLQIFGPSIQYVMK 394 (413)
Q Consensus 321 ~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~-~L~~L~l~~c~~i~ 394 (413)
......+..+++|+.|. ..+.+++.. +.....+++|+.|+|++|.++. +..-+..++ +|+.|++++++..-
T Consensus 487 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~--~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 487 QISWGVFDTLHRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSFNRIET--SKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCEE-GGGTTTCTTCCEEECTTSCCCC--EESCGGGSCTTCCEEECCSCCCCC
T ss_pred ccChhhhcccccCCEEECCCCcCCCcC-HHHccCCCcCCEEECCCCcCcc--cCHhHhhhcccCcEEEccCCCccc
Confidence 11112345678899988 433555433 2333568999999999999763 222256776 69999999976543
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.07 E-value=3.6e-11 Score=109.05 Aligned_cols=198 Identities=14% Similarity=0.038 Sum_probs=103.5
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccc-cccccchhhhccCccC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETE-VTDDEVDWISLFPEGE 245 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~l~~~~ 245 (413)
++|++|+++++.++......+ ..+++|++|+|+++ .++.... .....+++|++|++++|. +.......+. .+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~~~~~----~l 104 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASF-RACRNLTILWLHSN-VLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPATFH----GL 104 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTTTTT----TC
T ss_pred CCceEEEeeCCcCCccCHHHc-ccCCCCCEEECCCC-ccceeCH-hhcCCccCCCEEeCCCCCCccccCHHHhc----CC
Confidence 577777777765543211111 23466777777766 4442211 113346677777777765 5443322232 23
Q ss_pred CCcceEEeccccC-CCCHHHHHHHHHhCCCCcEEEcccccChHHH-HHHHhcCCCCceecccCcCCCcccccCCCChhhH
Q 044749 246 TCLESLIFDCVDC-AINFEALEKLVARSPFLRKLRLNRHVSIRQL-YRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDY 323 (413)
Q Consensus 246 ~~L~~L~L~~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l-~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~ 323 (413)
++|++|++.++.- .+... ....+++|++|+++++.- ..+ ...+..+++|++|+++
T Consensus 105 ~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~------------------ 161 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLH------------------ 161 (285)
T ss_dssp TTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECC------------------
T ss_pred cCCCEEECCCCcCCEECHh----HhhCCcCCCEEECCCCcc-cccCHhHhccCCCccEEECC------------------
Confidence 4677777666531 01010 112356666666665421 111 1112334444444443
Q ss_pred HHHHhhCCCcccccCCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCCCchhhhhc
Q 044749 324 IAAFAACKSLVCLSGFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKDFRPWLQRA 403 (413)
Q Consensus 324 ~~~~~~~~~L~~L~~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~~~~~~~ 403 (413)
...++.... .....+++|++|+|++|.++.... ..+..+++|+.|+++++..-.-...++..+
T Consensus 162 ---------------~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 224 (285)
T 1ozn_A 162 ---------------GNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPTEALAPL 224 (285)
T ss_dssp ---------------SSCCCEECT-TTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred ---------------CCcccccCH-HHhcCccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcCCHHHcccC
Confidence 223322111 122467999999999999765432 234688999999999986543333446666
Q ss_pred cccccccc
Q 044749 404 KNFVNFGF 411 (413)
Q Consensus 404 ~~~~~~~~ 411 (413)
+++..+.+
T Consensus 225 ~~L~~L~l 232 (285)
T 1ozn_A 225 RALQYLRL 232 (285)
T ss_dssp TTCCEEEC
T ss_pred cccCEEec
Confidence 66655543
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.07 E-value=7.2e-12 Score=125.07 Aligned_cols=209 Identities=14% Similarity=0.014 Sum_probs=128.3
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHH-HHHHHHhCCcCcEEEccccccccccchhhhccCc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCG-LAFIASKCRQLRVLDLIETEVTDDEVDWISLFPE 243 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~-l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~ 243 (413)
.+++|+.|+++++.+...... ..+++|+.|++++| .++..+ .......+++|++|++++|.+...... ..
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-----~~ 393 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-----FL 393 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-----EE
T ss_pred cccccCEEeCcCCcccccccc---ccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCcccccccc-----cc
Confidence 457777777777643321100 34578888888887 554321 122345688999999988876653311 23
Q ss_pred cCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhH
Q 044749 244 GETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDY 323 (413)
Q Consensus 244 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~ 323 (413)
.+++|+.|++.++.-.... .......+++|+.|++++|.........+..+++|+.|+++..... +..+
T Consensus 394 ~l~~L~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~ 462 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ---------ENFL 462 (570)
T ss_dssp TCTTCCEEECTTSEEESCT--TSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG---------GGEE
T ss_pred ccCCCCEEEccCCcccccc--chhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCc---------cccc
Confidence 5669999999887411000 0001235789999999987432223345667899999998743211 0111
Q ss_pred HHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCC
Q 044749 324 IAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKD 395 (413)
Q Consensus 324 ~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d 395 (413)
...+..+++|+.|. +...+++.....+ ..+++|++|+|++|.++... ...+..+++|+.|++++++...+
T Consensus 463 p~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 463 PDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMASNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhhhhcccCCCEEECCCCccccCChhhh-hcccCCCEEeCCCCcCCCCC-HHHhhcccCCcEEEecCCcccCC
Confidence 22345678888887 3335554322233 56789999999999876532 22346889999999999765443
No 61
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.07 E-value=2.6e-11 Score=122.60 Aligned_cols=246 Identities=12% Similarity=0.075 Sum_probs=133.9
Q ss_pred cCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCc-cCH-HHHHHHHHh-----CCCCcEEE
Q 044749 126 RFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMS-ITD-DDLALLAES-----FSGFKELT 198 (413)
Q Consensus 126 ~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-l~~-~~l~~l~~~-----~~~L~~L~ 198 (413)
.+++++.|++.++.-.. .+|..++ .+++|+.|+++++. ++. .....+... +++|+.|+
T Consensus 247 ~l~~L~~L~L~~n~l~~---~~p~~l~------------~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~ 311 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLT---KLPTFLK------------ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311 (636)
T ss_dssp GCTTCCEEEEECCTTCS---SCCTTTT------------TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred ccCCCCEEEecCCcCCc---cChHHHh------------cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE
Confidence 67899999999764322 1222221 56888888888886 776 443344432 37888888
Q ss_pred eCCCCCCChHHHHH--HHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCC---
Q 044749 199 LVCCEGFGTCGLAF--IASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSP--- 273 (413)
Q Consensus 199 L~~c~~~~~~~l~~--~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~--- 273 (413)
+++| .++ .+.. ....+++|++|++++|.+....+ .+.. +++|+.|+++++. +. .+......++
T Consensus 312 L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~----l~~L~~L~L~~N~--l~--~lp~~l~~l~~~L 379 (636)
T 4eco_A 312 IGYN-NLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS----EIKLASLNLAYNQ--IT--EIPANFCGFTEQV 379 (636)
T ss_dssp CCSS-CCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE----EEEESEEECCSSE--EE--ECCTTSEEECTTC
T ss_pred CCCC-cCC--ccCchhhhccCCCCCEEeCcCCcCccchh-hhCC----CCCCCEEECCCCc--cc--cccHhhhhhcccC
Confidence 8888 555 3333 45668888888888887663322 1222 2255555554442 00 0000011233
Q ss_pred -----------------------CCcEEEcccccChHHHHHHHh-------cCCCCceecccCcCCCcccccCCCChhhH
Q 044749 274 -----------------------FLRKLRLNRHVSIRQLYRLMV-------RAPQLTHLGTGKYGPSEVAQRQGDTEPDY 323 (413)
Q Consensus 274 -----------------------~L~~L~l~~~~~~~~l~~ll~-------~~p~L~~L~l~~~~~~~~~~~~g~~~~~~ 323 (413)
+|+.|+++++.-.......+. .+++|+.|+++..... ..-
T Consensus 380 ~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~----------~lp 449 (636)
T 4eco_A 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS----------KFP 449 (636)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC----------SCC
T ss_pred cEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC----------cCC
Confidence 444454444321111111111 3345566665532111 111
Q ss_pred HHHHhhCCCccccc-CCcccC---hhhHhhH---hhcCCCCCEEEeecccCChhhHHHHHh--cCCCCCEEEeecccccC
Q 044749 324 IAAFAACKSLVCLS-GFREIT---PDYLSAI---YPVCANLTSLNFSYATITADQLKPVIC--NCHKLQIFGPSIQYVMK 394 (413)
Q Consensus 324 ~~~~~~~~~L~~L~-~~~~i~---~~~l~~l---~~~~~~L~~L~Ls~~~it~~~l~~l~~--~~~~L~~L~l~~c~~i~ 394 (413)
...+..+++|+.|. ..+.++ ...+... ...+++|+.|+|++|.++ .+...+. .+++|+.|+|+++.. +
T Consensus 450 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l-~ 526 (636)
T 4eco_A 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRATTLPYLVGIDLSYNSF-S 526 (636)
T ss_dssp THHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC--BCCGGGSTTTCTTCCEEECCSSCC-S
T ss_pred HHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC--ccChhhhhccCCCcCEEECCCCCC-C
Confidence 12345578888887 333443 1111111 012238999999999877 3333343 789999999999765 4
Q ss_pred CCchhhhhccccccccc
Q 044749 395 DFRPWLQRAKNFVNFGF 411 (413)
Q Consensus 395 d~~~~~~~~~~~~~~~~ 411 (413)
..+..+..++++..+.+
T Consensus 527 ~ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 527 KFPTQPLNSSTLKGFGI 543 (636)
T ss_dssp SCCCGGGGCSSCCEEEC
T ss_pred CcChhhhcCCCCCEEEC
Confidence 46666777777666544
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.06 E-value=2.5e-11 Score=121.92 Aligned_cols=110 Identities=14% Similarity=0.131 Sum_probs=73.8
Q ss_pred HhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccC
Q 044749 163 ANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFP 242 (413)
Q Consensus 163 ~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~ 242 (413)
...+++|+.|+|+++.++......+ ..+++|++|+|++| .++... .....++++|++|+|++|.++.-....+.
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~--- 144 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFN-AIRYLP-PHVFQNVPLLTVLVLERNDLSSLPRGIFH--- 144 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTT---
T ss_pred HccCCCCcEEECCCCCCCCCChHHh-cCCCCCCEEECCCC-cCCCCC-HHHHcCCCCCCEEEeeCCCCCCCCHHHhc---
Confidence 3478999999999987654221122 24578999999988 555321 12235689999999999987753322223
Q ss_pred ccCCCcceEEeccccC-CCCHHHHHHHHHhCCCCcEEEcccc
Q 044749 243 EGETCLESLIFDCVDC-AINFEALEKLVARSPFLRKLRLNRH 283 (413)
Q Consensus 243 ~~~~~L~~L~L~~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~ 283 (413)
.+++|+.|+|+++.- .+... ....+++|+.|+++++
T Consensus 145 -~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 145 -NTPKLTTLSMSNNNLERIEDD----TFQATTSLQNLQLSSN 181 (597)
T ss_dssp -TCTTCCEEECCSSCCCBCCTT----TTTTCTTCCEEECTTS
T ss_pred -cCCCCCEEEeeCCcCCCCChh----hhhcCCcCcEEECcCC
Confidence 456999999998841 11111 1235799999999986
No 63
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.06 E-value=1.1e-11 Score=111.74 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=19.5
Q ss_pred hcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccc
Q 044749 352 PVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYV 392 (413)
Q Consensus 352 ~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~ 392 (413)
..+++|+.|+|++|.++ ..||+|+.|+++.+..
T Consensus 202 ~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 202 DRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKH 234 (272)
T ss_dssp TTCTTCCEEECCSSCBC--------CCTTTTHHHHHHHHHT
T ss_pred hCCcCCCEEEccCCCcc--------ccCcHHHHHHHHHHhC
Confidence 45567777777777643 2355666665555443
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.06 E-value=5.6e-12 Score=113.87 Aligned_cols=204 Identities=14% Similarity=0.046 Sum_probs=105.3
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGET 246 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~ 246 (413)
++|+.|+++++.++......+ ..+++|++|++++| .++.... .....+++|++|++++|.+.......+. .++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFS----GLS 100 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTT-TTCTTCSEEECTTC-CCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTT----TCT
T ss_pred CCccEEECCCCcccccCHhHh-ccccCCcEEECCCC-cCCccCH-HHccCCcCCCEEECCCCccCccChhhhc----CCc
Confidence 457777777765543211111 23466777777776 4442211 1134567777777777776554322233 344
Q ss_pred CcceEEeccccCC-CCHHHHHHHHHhCCCCcEEEcccccChH-HHHHHHhcCCCCceecccCcCCCcccccCCCChhhHH
Q 044749 247 CLESLIFDCVDCA-INFEALEKLVARSPFLRKLRLNRHVSIR-QLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYI 324 (413)
Q Consensus 247 ~L~~L~L~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~-~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~ 324 (413)
+|+.|++.++.-. +.... ...+++|++|+++++.-.. .+...+..+++|++|+++...... ......
T Consensus 101 ~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~ 169 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-------IYCTDL 169 (276)
T ss_dssp TCCEEECTTSCCCCSTTCC----CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-------ECGGGG
T ss_pred cccEEECCCCCccccCchh----cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-------CCHHHh
Confidence 7777777766311 11000 2246777777777652111 123445667788888877422211 111111
Q ss_pred HHHhhCCCcc-ccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeeccc
Q 044749 325 AAFAACKSLV-CLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQY 391 (413)
Q Consensus 325 ~~~~~~~~L~-~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~ 391 (413)
.....++.|. .|. ..+.++...... -...+|++|+|++|.++... ..++..+++|+.|++++.+
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~--~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGA--FKEIRLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCCEECTTS--SCSCCEEEEECCSSCCSCCC-TTTTTTCCSCCEEECCSSC
T ss_pred hhhhhccccceeeecCCCcccccCccc--cCCCcccEEECCCCceeecC-HhHhcccccccEEEccCCc
Confidence 1222233332 333 222333211111 12347999999998866432 2334678999999998644
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.04 E-value=8.2e-12 Score=120.68 Aligned_cols=13 Identities=8% Similarity=0.156 Sum_probs=6.3
Q ss_pred CCCCCEEEeeccc
Q 044749 354 CANLTSLNFSYAT 366 (413)
Q Consensus 354 ~~~L~~L~Ls~~~ 366 (413)
+++|+.|+|++|.
T Consensus 278 l~~L~~L~L~~Np 290 (440)
T 3zyj_A 278 LHHLERIHLHHNP 290 (440)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEcCCCC
Confidence 3445555555444
No 66
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.04 E-value=3.7e-11 Score=110.46 Aligned_cols=224 Identities=17% Similarity=0.108 Sum_probs=140.9
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHh--CCCCcEEEeCCCCCCChHHHHHHH-HhCCcCcEEEccccccccccchhh-hccC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAES--FSGFKELTLVCCEGFGTCGLAFIA-SKCRQLRVLDLIETEVTDDEVDWI-SLFP 242 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~--~~~L~~L~L~~c~~~~~~~l~~~~-~~~~~L~~L~L~~~~i~~~~~~~l-~~l~ 242 (413)
..++.+.+.++.+++..+..+... +++|++|++++| .+.......+. ..+++|++|+|++|.+++.....- ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 567889999999988877665443 367999999998 55432211111 568999999999999886432111 1222
Q ss_pred ccCCCcceEEeccccC-CCCHHHHHHHHHhCCCCcEEEcccccChH--HHHH--HHhcCCCCceecccCcCCCcccccCC
Q 044749 243 EGETCLESLIFDCVDC-AINFEALEKLVARSPFLRKLRLNRHVSIR--QLYR--LMVRAPQLTHLGTGKYGPSEVAQRQG 317 (413)
Q Consensus 243 ~~~~~L~~L~L~~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~--~l~~--ll~~~p~L~~L~l~~~~~~~~~~~~g 317 (413)
.+++|++|+++++.- .+... ....+++|++|+++++.-.. .+.. .+..+++|++|+++.....
T Consensus 143 -~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~------- 210 (310)
T 4glp_A 143 -LKPGLKVLSIAQAHSPAFSCE----QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME------- 210 (310)
T ss_dssp -BCSCCCEEEEECCSSCCCCTT----SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-------
T ss_pred -hccCCCEEEeeCCCcchhhHH----HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-------
Confidence 567999999999851 11111 12347999999999974222 1221 1256899999999843321
Q ss_pred CChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcC---CCCCEEEeecccCChhhHHHHHhcCCCCCEEEeeccccc
Q 044749 318 DTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVC---ANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVM 393 (413)
Q Consensus 318 ~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~---~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i 393 (413)
.........+..+++|+.|. +.+.+++.....+ ..+ ++|++|+|++|.++. +.. .-+++|+.|+++++..
T Consensus 211 ~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~l~~--lp~--~~~~~L~~L~Ls~N~l- 284 (310)
T 4glp_A 211 TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA-PRCMWSSALNSLNLSFAGLEQ--VPK--GLPAKLRVLDLSSNRL- 284 (310)
T ss_dssp CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC-SSCCCCTTCCCEECCSSCCCS--CCS--CCCSCCSCEECCSCCC-
T ss_pred chHHHHHHHHhcCCCCCEEECCCCCCCccchhhH-HhccCcCcCCEEECCCCCCCc--hhh--hhcCCCCEEECCCCcC-
Confidence 11222233457889999998 4445554322222 233 799999999999762 221 1247999999999864
Q ss_pred CCCchhhhhcccccccc
Q 044749 394 KDFRPWLQRAKNFVNFG 410 (413)
Q Consensus 394 ~d~~~~~~~~~~~~~~~ 410 (413)
+..+. ...++++..+.
T Consensus 285 ~~~~~-~~~l~~L~~L~ 300 (310)
T 4glp_A 285 NRAPQ-PDELPEVDNLT 300 (310)
T ss_dssp CSCCC-TTSCCCCSCEE
T ss_pred CCCch-hhhCCCccEEE
Confidence 33322 34445544443
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.04 E-value=7.8e-12 Score=122.28 Aligned_cols=229 Identities=13% Similarity=0.086 Sum_probs=138.5
Q ss_pred CCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCC
Q 044749 127 FRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFG 206 (413)
Q Consensus 127 ~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~ 206 (413)
+++++.|+++++.- .. +.+ .. ...+++|+.|+|+++.++...- ...+++|+.|+|++| .++
T Consensus 33 ~~~L~~L~Ls~n~l-~~--~~~--------~~----~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N-~l~ 93 (487)
T 3oja_A 33 AWNVKELDLSGNPL-SQ--ISA--------AD----LAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNN-YVQ 93 (487)
T ss_dssp GGGCCEEECCSSCC-CC--CCG--------GG----GTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSS-EEE
T ss_pred CCCccEEEeeCCcC-CC--CCH--------HH----HhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCC-cCC
Confidence 34788888887532 21 111 11 1267888899988886542111 234578899998888 554
Q ss_pred hHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccCh
Q 044749 207 TCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSI 286 (413)
Q Consensus 207 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 286 (413)
.. ...++|++|++++|.+++.. .. .+++|+.|+++++. ++... ......+++|+.|+++++.-.
T Consensus 94 ~l------~~~~~L~~L~L~~N~l~~~~---~~----~l~~L~~L~L~~N~--l~~~~-~~~~~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 94 EL------LVGPSIETLHAANNNISRVS---CS----RGQGKKNIYLANNK--ITMLR-DLDEGCRSRVQYLDLKLNEID 157 (487)
T ss_dssp EE------EECTTCCEEECCSSCCCCEE---EC----CCSSCEEEECCSSC--CCSGG-GBCGGGGSSEEEEECTTSCCC
T ss_pred CC------CCCCCcCEEECcCCcCCCCC---cc----ccCCCCEEECCCCC--CCCCC-chhhcCCCCCCEEECCCCCCC
Confidence 32 13478899999888877654 22 24589999998885 22100 001234789999999886321
Q ss_pred H-HHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeec
Q 044749 287 R-QLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSY 364 (413)
Q Consensus 287 ~-~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~ 364 (413)
. ....+...+++|+.|+++....... . ....+++|+.|. +.+.++... +. ...+++|+.|+|++
T Consensus 158 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~--------~----~~~~l~~L~~L~Ls~N~l~~~~-~~-~~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 158 TVNFAELAASSDTLEHLNLQYNFIYDV--------K----GQVVFAKLKTLDLSSNKLAFMG-PE-FQSAAGVTWISLRN 223 (487)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEE--------E----CCCCCTTCCEEECCSSCCCEEC-GG-GGGGTTCSEEECTT
T ss_pred CcChHHHhhhCCcccEEecCCCccccc--------c----ccccCCCCCEEECCCCCCCCCC-Hh-HcCCCCccEEEecC
Confidence 1 1122334688999999984332210 0 011367788887 444554321 12 34678999999999
Q ss_pred ccCChhhHHHHHhcCCCCCEEEeeccccc-CCCchhhhhcccc
Q 044749 365 ATITADQLKPVICNCHKLQIFGPSIQYVM-KDFRPWLQRAKNF 406 (413)
Q Consensus 365 ~~it~~~l~~l~~~~~~L~~L~l~~c~~i-~d~~~~~~~~~~~ 406 (413)
|.++. +...+..+++|+.|++.++... ...+.|+..++++
T Consensus 224 N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 224 NKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp SCCCE--ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred CcCcc--cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 98763 3333567889999999987654 2344555544433
No 68
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=1.4e-10 Score=120.26 Aligned_cols=244 Identities=14% Similarity=0.134 Sum_probs=130.9
Q ss_pred cCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCc-cCH-HHHHHHHH------hCCCCcEE
Q 044749 126 RFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMS-ITD-DDLALLAE------SFSGFKEL 197 (413)
Q Consensus 126 ~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-l~~-~~l~~l~~------~~~~L~~L 197 (413)
.+++|+.|+++++..... +|..+ ..+++|+.|+|+++. ++. .....+.. .+++|+.|
T Consensus 489 ~L~~L~~L~Ls~N~l~~~---iP~~l------------~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQ---LPDFL------------YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp GCTTCCEEEEESCTTCCS---CCGGG------------GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred cCCCCCEEECcCCCCCcc---ChHHH------------hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 788999999987642211 11111 256788888888875 765 33222322 23478888
Q ss_pred EeCCCCCCChHHHHH--HHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCC-
Q 044749 198 TLVCCEGFGTCGLAF--IASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPF- 274 (413)
Q Consensus 198 ~L~~c~~~~~~~l~~--~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~- 274 (413)
+|++| .++ .+.. ...++++|+.|+|++|.++ .. ..+ ..+++|+.|+|+++. +. .+......+++
T Consensus 554 ~Ls~N-~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~-~l----p~~-~~L~~L~~L~Ls~N~--l~--~lp~~l~~l~~~ 620 (876)
T 4ecn_A 554 YMGYN-NLE--EFPASASLQKMVKLGLLDCVHNKVR-HL----EAF-GTNVKLTDLKLDYNQ--IE--EIPEDFCAFTDQ 620 (876)
T ss_dssp ECCSS-CCC--BCCCHHHHTTCTTCCEEECTTSCCC-BC----CCC-CTTSEESEEECCSSC--CS--CCCTTSCEECTT
T ss_pred EeeCC-cCC--ccCChhhhhcCCCCCEEECCCCCcc-cc----hhh-cCCCcceEEECcCCc--cc--cchHHHhhcccc
Confidence 88877 555 2333 4556778888888877766 21 111 234466777666663 11 01101122455
Q ss_pred CcEEEcccccChHHHHHHHhc-------------------------------CCCCceecccCcCCCcccccCCCChhhH
Q 044749 275 LRKLRLNRHVSIRQLYRLMVR-------------------------------APQLTHLGTGKYGPSEVAQRQGDTEPDY 323 (413)
Q Consensus 275 L~~L~l~~~~~~~~l~~ll~~-------------------------------~p~L~~L~l~~~~~~~~~~~~g~~~~~~ 323 (413)
|+.|+++++. +..+...+.. .++|+.|+++.... ..--
T Consensus 621 L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L----------~~lp 689 (876)
T 4ecn_A 621 VEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI----------QKFP 689 (876)
T ss_dssp CCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC----------CSCC
T ss_pred CCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC----------CccC
Confidence 6666666542 1111111111 22444444442111 1111
Q ss_pred HHHHhhCCCccccc-CCcccC---hhhHhhH---hhcCCCCCEEEeecccCChhhHHHHHh--cCCCCCEEEeecccccC
Q 044749 324 IAAFAACKSLVCLS-GFREIT---PDYLSAI---YPVCANLTSLNFSYATITADQLKPVIC--NCHKLQIFGPSIQYVMK 394 (413)
Q Consensus 324 ~~~~~~~~~L~~L~-~~~~i~---~~~l~~l---~~~~~~L~~L~Ls~~~it~~~l~~l~~--~~~~L~~L~l~~c~~i~ 394 (413)
...+..+++|+.|. ..+.++ ....... ...|++|++|+|++|.++ .+...+. .+++|+.|+|++|.. +
T Consensus 690 ~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~Ls~N~L-~ 766 (876)
T 4ecn_A 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDVSYNCF-S 766 (876)
T ss_dssp HHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTTCTTCCEEECCSSCC-S
T ss_pred HHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc--cchHHhhhccCCCcCEEEeCCCCC-C
Confidence 23345678888887 333443 1111111 112348999999999876 3333344 789999999998754 4
Q ss_pred CCchhhhhccccccccc
Q 044749 395 DFRPWLQRAKNFVNFGF 411 (413)
Q Consensus 395 d~~~~~~~~~~~~~~~~ 411 (413)
..+..+..++++..+.+
T Consensus 767 ~lp~~l~~L~~L~~L~L 783 (876)
T 4ecn_A 767 SFPTQPLNSSQLKAFGI 783 (876)
T ss_dssp SCCCGGGGCTTCCEEEC
T ss_pred ccchhhhcCCCCCEEEC
Confidence 46656666666655543
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.03 E-value=1.2e-11 Score=120.00 Aligned_cols=201 Identities=12% Similarity=0.018 Sum_probs=112.8
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGET 246 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~ 246 (413)
++++.|+|+++.++......+ ..+++|++|+|+++ .++.... .....+++|++|+|++|.++.-....+. .++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~ 147 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRN-SIRQIEV-GAFNGLASLNTLELFDNWLTVIPSGAFE----YLS 147 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSCCSBCCTTTSS----SCT
T ss_pred CCccEEECcCCcCceECHHHc-CCCCCCCEEECCCC-ccCCcCh-hhccCcccCCEEECCCCcCCccChhhhc----ccC
Confidence 567788887775543211112 23467888888877 5543211 1234577888888888776644322222 345
Q ss_pred CcceEEeccccC-CCCHHHHHHHHHhCCCCcEEEcccccChHHH-HHHHhcCCCCceecccCcCCCcccccCCCChhhHH
Q 044749 247 CLESLIFDCVDC-AINFEALEKLVARSPFLRKLRLNRHVSIRQL-YRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYI 324 (413)
Q Consensus 247 ~L~~L~L~~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l-~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~ 324 (413)
+|++|+|+++.- .+... ....+++|+.|+++++..+..+ ...+..+++|+.|+++...... . .
T Consensus 148 ~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-------~-~--- 212 (452)
T 3zyi_A 148 KLRELWLRNNPIESIPSY----AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-------M-P--- 212 (452)
T ss_dssp TCCEEECCSCCCCEECTT----TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-------C-C---
T ss_pred CCCEEECCCCCcceeCHh----HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-------c-c---
Confidence 888888877641 11111 1234678888888775433322 1234567788888877432221 0 0
Q ss_pred HHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccc
Q 044749 325 AAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYV 392 (413)
Q Consensus 325 ~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~ 392 (413)
.+..+++|+.|. ..+.++...... ...+++|+.|+|++|.++..... .+..+++|+.|+|+++..
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGS-FHGLSSLKKLWVMNSQVSLIERN-AFDGLASLVELNLAHNNL 278 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGG-GTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCC
T ss_pred -cccccccccEEECcCCcCcccCccc-ccCccCCCEEEeCCCcCceECHH-HhcCCCCCCEEECCCCcC
Confidence 133456677766 333444322222 24667888888888776543322 235677888888877743
No 70
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.03 E-value=2.1e-10 Score=97.98 Aligned_cols=104 Identities=23% Similarity=0.229 Sum_probs=52.6
Q ss_pred CCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccC
Q 044749 166 YPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGE 245 (413)
Q Consensus 166 ~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~ 245 (413)
+++|+.|+++++.+++ +.. ...+++|++|++++| .+.... ....+++|++|++++|.+++..+..+. .+
T Consensus 43 l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~l~~n-~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l~----~l 111 (197)
T 4ezg_A 43 MNSLTYITLANINVTD--LTG-IEYAHNIKDLTINNI-HATNYN---PISGLSNLERLRIMGKDVTSDKIPNLS----GL 111 (197)
T ss_dssp HHTCCEEEEESSCCSC--CTT-GGGCTTCSEEEEESC-CCSCCG---GGTTCTTCCEEEEECTTCBGGGSCCCT----TC
T ss_pred cCCccEEeccCCCccC--hHH-HhcCCCCCEEEccCC-CCCcch---hhhcCCCCCEEEeECCccCcccChhhc----CC
Confidence 4566666666665542 111 233466777777766 433221 133467777777777776654422222 23
Q ss_pred CCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccc
Q 044749 246 TCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRH 283 (413)
Q Consensus 246 ~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 283 (413)
++|+.|+++++. ++......+ ..+++|+.|++++|
T Consensus 112 ~~L~~L~Ls~n~--i~~~~~~~l-~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 112 TSLTLLDISHSA--HDDSILTKI-NTLPKVNSIDLSYN 146 (197)
T ss_dssp TTCCEEECCSSB--CBGGGHHHH-TTCSSCCEEECCSC
T ss_pred CCCCEEEecCCc--cCcHhHHHH-hhCCCCCEEEccCC
Confidence 466666666653 222122212 23455555555543
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.01 E-value=2e-11 Score=113.24 Aligned_cols=227 Identities=12% Similarity=0.076 Sum_probs=143.7
Q ss_pred HHhcCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCC
Q 044749 123 ARGRFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCC 202 (413)
Q Consensus 123 l~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c 202 (413)
.+..+++++.|+++++.- .. +.+..+ ..+++|+.|+++++.++.-. ...+++|+.|+++++
T Consensus 71 ~~~~l~~L~~L~L~~n~l-~~--~~~~~~------------~~l~~L~~L~Ls~n~l~~l~----~~~~~~L~~L~l~~n 131 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKI-SK--ISPGAF------------APLVKLERLYLSKNQLKELP----EKMPKTLQELRVHEN 131 (330)
T ss_dssp TTTTCTTCCEEECCSSCC-CC--BCTTTT------------TTCTTCCEEECCSSCCSBCC----SSCCTTCCEEECCSS
T ss_pred hhccCCCCCEEECCCCcC-Ce--eCHHHh------------cCCCCCCEEECCCCcCCccC----hhhcccccEEECCCC
Confidence 456788888888886532 11 112212 26789999999998665210 112368999999998
Q ss_pred CCCChHHHHHHHHhCCcCcEEEcccccccccc--chhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEc
Q 044749 203 EGFGTCGLAFIASKCRQLRVLDLIETEVTDDE--VDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRL 280 (413)
Q Consensus 203 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~--~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l 280 (413)
.++... ......+++|++|++++|.+...+ ...+. .+++|+.|+++++. ++. +. ....++|++|++
T Consensus 132 -~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----~l~~L~~L~l~~n~--l~~--l~--~~~~~~L~~L~l 199 (330)
T 1xku_A 132 -EITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQ----GMKKLSYIRIADTN--ITT--IP--QGLPPSLTELHL 199 (330)
T ss_dssp -CCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGG----GCTTCCEEECCSSC--CCS--CC--SSCCTTCSEEEC
T ss_pred -cccccC-HhHhcCCccccEEECCCCcCCccCcChhhcc----CCCCcCEEECCCCc--ccc--CC--ccccccCCEEEC
Confidence 665432 233567999999999999876532 12233 45699999999884 111 00 011378999999
Q ss_pred ccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCE
Q 044749 281 NRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTS 359 (413)
Q Consensus 281 ~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~ 359 (413)
+++.-.......+..+++|+.|+++...... .....+..+++|+.|. ....++ .++.....+++|++
T Consensus 200 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----------~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~ 267 (330)
T 1xku_A 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISA----------VDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQV 267 (330)
T ss_dssp TTSCCCEECTGGGTTCTTCCEEECCSSCCCE----------ECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCE
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCce----------eChhhccCCCCCCEEECCCCcCc--cCChhhccCCCcCE
Confidence 9873211113445678999999998432221 0111345678899988 333454 23333456799999
Q ss_pred EEeecccCChhhHHHHH-----hcCCCCCEEEeecccc
Q 044749 360 LNFSYATITADQLKPVI-----CNCHKLQIFGPSIQYV 392 (413)
Q Consensus 360 L~Ls~~~it~~~l~~l~-----~~~~~L~~L~l~~c~~ 392 (413)
|+|++|.++......+. ...+.|+.|++.+.+.
T Consensus 268 L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp EECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred EECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 99999987654322221 1247899999988654
No 72
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.00 E-value=1.2e-11 Score=123.57 Aligned_cols=216 Identities=14% Similarity=0.121 Sum_probs=139.7
Q ss_pred CCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEcccccccccc--chhhhccCccC
Q 044749 168 WLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDE--VDWISLFPEGE 245 (413)
Q Consensus 168 ~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~--~~~l~~l~~~~ 245 (413)
+|++|+++++.+.. +. ...+++|+.|.+.+|........ ..+++|++|++++|.++... ...+. .+
T Consensus 305 ~L~~L~l~~n~~~~--l~--~~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~----~~ 372 (570)
T 2z63_A 305 GWQHLELVNCKFGQ--FP--TLKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQSDF----GT 372 (570)
T ss_dssp CCSEEEEESCBCSS--CC--BCBCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSCCBEEEEEEHHHH----TC
T ss_pred CccEEeeccCcccc--cC--cccccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCccCcccccccccc----cc
Confidence 89999999987652 11 13468899999998843222111 56899999999999877543 22333 45
Q ss_pred CCcceEEeccccCC-CCHHHHHHHHHhCCCCcEEEcccccChHHH-HHHHhcCCCCceecccCcCCCcccccCCCChhhH
Q 044749 246 TCLESLIFDCVDCA-INFEALEKLVARSPFLRKLRLNRHVSIRQL-YRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDY 323 (413)
Q Consensus 246 ~~L~~L~L~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l-~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~ 323 (413)
++|+.|+++++... +.. -...+++|+.|+++++...... ...+..+++|+.|+++..... ...
T Consensus 373 ~~L~~L~l~~n~l~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~----------~~~ 437 (570)
T 2z63_A 373 TSLKYLDLSFNGVITMSS-----NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR----------VAF 437 (570)
T ss_dssp SCCCEEECCSCSEEEEEE-----EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE----------ECC
T ss_pred CccCEEECCCCccccccc-----cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc----------ccc
Confidence 59999999988411 100 0235799999999986311111 124567899999999843221 111
Q ss_pred HHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCCCchhhhh
Q 044749 324 IAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKDFRPWLQR 402 (413)
Q Consensus 324 ~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~~~~~~ 402 (413)
...+..+++|+.|. ....+++..++.....+++|+.|+|++|.++..... .+..+++|+.|++++|...+-....+..
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 516 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMASNQLKSVPDGIFDR 516 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh-hhhcccCCCEEeCCCCcCCCCCHHHhhc
Confidence 22345678899888 333555444555556789999999999997754322 3468899999999998543322334555
Q ss_pred ccccccccc
Q 044749 403 AKNFVNFGF 411 (413)
Q Consensus 403 ~~~~~~~~~ 411 (413)
++++..+.+
T Consensus 517 l~~L~~L~l 525 (570)
T 2z63_A 517 LTSLQKIWL 525 (570)
T ss_dssp CTTCCEEEC
T ss_pred ccCCcEEEe
Confidence 555555443
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.99 E-value=1.9e-09 Score=98.92 Aligned_cols=184 Identities=14% Similarity=0.114 Sum_probs=96.5
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+++|++|+++++.+++- .. ...+++|++|+|++| .++... . ...+++|++|++++|.+.+-. .+. .
T Consensus 39 ~l~~L~~L~l~~~~i~~l--~~-~~~l~~L~~L~L~~n-~i~~~~--~-~~~l~~L~~L~L~~n~l~~~~--~~~----~ 105 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI--EG-VQYLNNLIGLELKDN-QITDLA--P-LKNLTKITELELSGNPLKNVS--AIA----G 105 (308)
T ss_dssp HHHTCCEEECTTSCCCCC--TT-GGGCTTCCEEECCSS-CCCCCG--G-GTTCCSCCEEECCSCCCSCCG--GGT----T
T ss_pred HcCCcCEEEeeCCCccCc--hh-hhccCCCCEEEccCC-cCCCCh--h-HccCCCCCEEEccCCcCCCch--hhc----C
Confidence 345666666666644321 11 123456666666666 443221 1 345666666666666654421 122 2
Q ss_pred CCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHH
Q 044749 245 ETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYI 324 (413)
Q Consensus 245 ~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~ 324 (413)
+++|+.|+++++. +.. +.. ...+++|+.|+++++. +..+.. +..+++|++|+++
T Consensus 106 l~~L~~L~l~~n~--l~~--~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~------------------- 159 (308)
T 1h6u_A 106 LQSIKTLDLTSTQ--ITD--VTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIG------------------- 159 (308)
T ss_dssp CTTCCEEECTTSC--CCC--CGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECC-------------------
T ss_pred CCCCCEEECCCCC--CCC--chh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEcc-------------------
Confidence 3466666666553 111 111 2234555555555541 111111 3334444444443
Q ss_pred HHHhhCCCcccccCCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCCCchhhhhcc
Q 044749 325 AAFAACKSLVCLSGFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKDFRPWLQRAK 404 (413)
Q Consensus 325 ~~~~~~~~L~~L~~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~~~~~~~~ 404 (413)
...+++. .. ...+++|++|++++|.+++... +..+++|+.|++++|.. ++..+ +..++
T Consensus 160 --------------~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l-~~~~~-l~~l~ 217 (308)
T 1h6u_A 160 --------------NAQVSDL--TP-LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQI-SDVSP-LANTS 217 (308)
T ss_dssp --------------SSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCC-CBCGG-GTTCT
T ss_pred --------------CCcCCCC--hh-hcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCcc-Ccccc-ccCCC
Confidence 2233321 22 3578999999999999765332 57899999999999864 44443 45555
Q ss_pred ccccc
Q 044749 405 NFVNF 409 (413)
Q Consensus 405 ~~~~~ 409 (413)
++..+
T Consensus 218 ~L~~L 222 (308)
T 1h6u_A 218 NLFIV 222 (308)
T ss_dssp TCCEE
T ss_pred CCCEE
Confidence 55444
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.99 E-value=1.4e-11 Score=120.45 Aligned_cols=219 Identities=12% Similarity=0.097 Sum_probs=147.5
Q ss_pred hHHHhcCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeC
Q 044749 121 DRARGRFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLV 200 (413)
Q Consensus 121 ~~l~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~ 200 (413)
...+..+++++.|+++++.-..... ...+++|+.|+|+++.++.-. ..++|+.|+++
T Consensus 51 ~~~~~~l~~L~~L~Ls~N~l~~~~~-----------------l~~l~~L~~L~Ls~N~l~~l~------~~~~L~~L~L~ 107 (487)
T 3oja_A 51 AADLAPFTKLELLNLSSNVLYETLD-----------------LESLSTLRTLDLNNNYVQELL------VGPSIETLHAA 107 (487)
T ss_dssp GGGGTTCTTCCEEECTTSCCEEEEE-----------------CTTCTTCCEEECCSSEEEEEE------ECTTCCEEECC
T ss_pred HHHHhCCCCCCEEEeeCCCCCCCcc-----------------cccCCCCCEEEecCCcCCCCC------CCCCcCEEECc
Confidence 4456788999999999764221111 126799999999999765311 23789999999
Q ss_pred CCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEc
Q 044749 201 CCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRL 280 (413)
Q Consensus 201 ~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l 280 (413)
+| .++... ...+++|+.|+|++|.++......+.. +++|+.|+|+++. ++......+...+++|+.|++
T Consensus 108 ~N-~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~Ls~N~--l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 108 NN-NISRVS----CSRGQGKKNIYLANNKITMLRDLDEGC----RSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp SS-CCCCEE----ECCCSSCEEEECCSSCCCSGGGBCGGG----GSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEEC
T ss_pred CC-cCCCCC----ccccCCCCEEECCCCCCCCCCchhhcC----CCCCCEEECCCCC--CCCcChHHHhhhCCcccEEec
Confidence 98 665432 134789999999999988754333443 4599999999884 222112223345799999999
Q ss_pred ccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCE
Q 044749 281 NRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTS 359 (413)
Q Consensus 281 ~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~ 359 (413)
+++. +.++. ....+++|+.|+++...... +...+..+++|+.|. +.+.++. ++.....+++|+.
T Consensus 177 s~N~-l~~~~-~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~ 241 (487)
T 3oja_A 177 QYNF-IYDVK-GQVVFAKLKTLDLSSNKLAF-----------MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEH 241 (487)
T ss_dssp TTSC-CCEEE-CCCCCTTCCEEECCSSCCCE-----------ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCE
T ss_pred CCCc-ccccc-ccccCCCCCEEECCCCCCCC-----------CCHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCE
Confidence 9873 12111 12248899999998433221 111245678899888 4445552 3333456789999
Q ss_pred EEeecccCChhhHHHHHhcCCCCCEEEee
Q 044749 360 LNFSYATITADQLKPVICNCHKLQIFGPS 388 (413)
Q Consensus 360 L~Ls~~~it~~~l~~l~~~~~~L~~L~l~ 388 (413)
|+|++|.++...+...+..+++|+.|++.
T Consensus 242 L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 99999998877777777888888877775
No 75
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.98 E-value=1.2e-09 Score=107.87 Aligned_cols=160 Identities=14% Similarity=0.074 Sum_probs=105.7
Q ss_pred HhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHH-HH
Q 044749 215 SKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYR-LM 293 (413)
Q Consensus 215 ~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~-ll 293 (413)
..+++|++|++++|.+++..+.++. .+++|+.|+++++. -.....+......+++|+.|+++++.-...+.. .+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCG----HLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCC----CCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred hhCCcccEEEeECCccChhhhhhhc----cCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence 4678899999999988875543343 45599999999986 222233434455689999999998742221222 34
Q ss_pred hcCCCCceecccCcCCCcccccCCCChhhHHHHHhhC-CCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhh
Q 044749 294 VRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAAC-KSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQ 371 (413)
Q Consensus 294 ~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~-~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~ 371 (413)
..+++|++|+++..... . . .+... ++|+.|. +...++ .++.....+++|++|+|++|.++.-.
T Consensus 396 ~~l~~L~~L~Ls~N~l~---------~-~---~~~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~l~ 460 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILT---------D-T---IFRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKSVP 460 (520)
T ss_dssp CCCTTCCEEECCSSCCC---------G-G---GGGSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred ccCccCCEEECcCCCCC---------c-c---hhhhhcccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCCccC
Confidence 56799999999843221 1 0 11122 5888887 444555 33333347899999999999976322
Q ss_pred HHHHHhcCCCCCEEEeecccccCC
Q 044749 372 LKPVICNCHKLQIFGPSIQYVMKD 395 (413)
Q Consensus 372 l~~l~~~~~~L~~L~l~~c~~i~d 395 (413)
. ..+..+++|+.|++++++...+
T Consensus 461 ~-~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 461 D-GIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp T-TTTTTCTTCCEEECCSSCBCCC
T ss_pred H-HHhccCCcccEEECcCCCCccc
Confidence 1 1356889999999999775433
No 76
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.97 E-value=5e-11 Score=124.55 Aligned_cols=87 Identities=20% Similarity=0.138 Sum_probs=40.7
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHH-HHHHhCCcCcEEEccccccccccchhhhccCc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLA-FIASKCRQLRVLDLIETEVTDDEVDWISLFPE 243 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~-~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~ 243 (413)
.+++|+.|+|+++.++......+ ..+++|++|+|++| .++..... .....+++|++|+|++|.+.... ......
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~ 145 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAF-QGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY---LHPSFG 145 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSS-CSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC---CCGGGG
T ss_pred CCCCCCEEECCCCcCcccCHhHc-cCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccc---cchhHh
Confidence 45666666666654432111111 12355666666666 44321111 01234566666666666655432 111112
Q ss_pred cCCCcceEEeccc
Q 044749 244 GETCLESLIFDCV 256 (413)
Q Consensus 244 ~~~~L~~L~L~~~ 256 (413)
.+++|++|+|+++
T Consensus 146 ~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 146 KLNSLKSIDFSSN 158 (844)
T ss_dssp TCSSCCEEEEESS
T ss_pred hCCCCCEEECCCC
Confidence 3446666666665
No 77
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.97 E-value=1.4e-10 Score=118.43 Aligned_cols=110 Identities=18% Similarity=0.190 Sum_probs=52.4
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+++|+.|+|+++.++.-.... ...+++|++|+|++| .+.... ......+++|++|++++|.+.......+ ..
T Consensus 71 ~l~~L~~L~L~~n~l~~l~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~ 143 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLSDKT-FAFCTNLTELHLMSN-SIQKIK-NNPFVKQKNLITLDLSHNGLSSTKLGTQ----VQ 143 (680)
T ss_dssp HCTTCCEEECCSSCCCCCCTTT-TTTCTTCSEEECCSS-CCCCCC-SCTTTTCTTCCEEECCSSCCSCCCCCSS----SC
T ss_pred cccCcCEEECCCCccCccChhh-hccCCCCCEEECCCC-ccCccC-hhHccccCCCCEEECCCCcccccCchhh----cc
Confidence 4566777777666443211001 122456777777666 333211 0112346667777777666554432212 23
Q ss_pred CCCcceEEeccccC-CCCHHHHHHHHHhCCCCcEEEcccc
Q 044749 245 ETCLESLIFDCVDC-AINFEALEKLVARSPFLRKLRLNRH 283 (413)
Q Consensus 245 ~~~L~~L~L~~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~ 283 (413)
+++|++|+++++.- .+....+. ...+++|+.|+++++
T Consensus 144 l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 144 LENLQELLLSNNKIQALKSEELD--IFANSSLKKLELSSN 181 (680)
T ss_dssp CTTCCEEECCSSCCCCBCHHHHG--GGTTCEESEEECTTC
T ss_pred cccCCEEEccCCcccccCHHHhh--ccccccccEEECCCC
Confidence 44667776666531 12222211 112456666666654
No 78
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.95 E-value=4.6e-11 Score=110.89 Aligned_cols=199 Identities=11% Similarity=0.064 Sum_probs=114.0
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+++|+.|+++++.++......+ ..+++|++|+|+++ .++... . ...++|++|++++|.+..-....+. .
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~--~--~~~~~L~~L~l~~n~i~~~~~~~~~----~ 145 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHEKAF-SPLRKLQKLYISKN-HLVEIP--P--NLPSSLVELRIHDNRIRKVPKGVFS----G 145 (332)
T ss_dssp TCTTCCEEECCSSCCCEECGGGS-TTCTTCCEEECCSS-CCCSCC--S--SCCTTCCEEECCSSCCCCCCSGGGS----S
T ss_pred CCCCCcEEECCCCccCccCHhHh-hCcCCCCEEECCCC-cCCccC--c--cccccCCEEECCCCccCccCHhHhC----C
Confidence 56788888888776553211122 23467888888877 444211 0 1126788888888877654322233 3
Q ss_pred CCCcceEEeccccCCCCHHHH-HHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhH
Q 044749 245 ETCLESLIFDCVDCAINFEAL-EKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDY 323 (413)
Q Consensus 245 ~~~L~~L~L~~~~~~~~~~~l-~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~ 323 (413)
+++|+.|++.++. ++..+. ....... +|+.|+++++. +..+.. ...++|++|+++...... . .
T Consensus 146 l~~L~~L~l~~n~--l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~--~~~~~L~~L~l~~n~i~~-------~---~ 209 (332)
T 2ft3_A 146 LRNMNCIEMGGNP--LENSGFEPGAFDGL-KLNYLRISEAK-LTGIPK--DLPETLNELHLDHNKIQA-------I---E 209 (332)
T ss_dssp CSSCCEEECCSCC--CBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCS--SSCSSCSCCBCCSSCCCC-------C---C
T ss_pred CccCCEEECCCCc--cccCCCCcccccCC-ccCEEECcCCC-CCccCc--cccCCCCEEECCCCcCCc-------c---C
Confidence 4588888888774 211000 0001112 77888887752 111110 113688888887432211 0 0
Q ss_pred HHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccc
Q 044749 324 IAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYV 392 (413)
Q Consensus 324 ~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~ 392 (413)
...+..+++|+.|. ..+.++......+ ..+++|++|+|++|.++ .+..-+..+++|+.|+++++..
T Consensus 210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSCC
T ss_pred HHHhcCCCCCCEEECCCCcCCcCChhHh-hCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCCC
Confidence 11234577888887 3334543322223 56789999999999876 2333357899999999998753
No 79
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=6.5e-09 Score=97.04 Aligned_cols=160 Identities=18% Similarity=0.124 Sum_probs=98.5
Q ss_pred HHHHHHhCCcCcEEEccccc-cccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHH-hCCCCcEEEccccc---
Q 044749 210 LAFIASKCRQLRVLDLIETE-VTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVA-RSPFLRKLRLNRHV--- 284 (413)
Q Consensus 210 l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~-~~~~L~~L~l~~~~--- 284 (413)
+..+...+|+|++|+|.++. +. +..+ ..++|++|+|..+. ++.+.+..+.. .+|+|++|+|+.+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~------l~~~--~~~~L~~L~L~~~~--l~~~~l~~l~~~~lp~L~~L~L~~~~~~~ 233 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS------IGKK--PRPNLKSLEIISGG--LPDSVVEDILGSDLPNLEKLVLYVGVEDY 233 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB------CCSC--BCTTCSEEEEECSB--CCHHHHHHHHHSBCTTCCEEEEECBCGGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCce------eccc--cCCCCcEEEEecCC--CChHHHHHHHHccCCCCcEEEEecccccc
Confidence 45566678888888887762 21 1111 25688888887664 67777776664 47888888875321
Q ss_pred ----ChHHHHHHHh--cCCCCceecccCcCCCcccccCCCChhhHHHHHh--hCCCccccc-CCcccChhhHhhHh---h
Q 044749 285 ----SIRQLYRLMV--RAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFA--ACKSLVCLS-GFREITPDYLSAIY---P 352 (413)
Q Consensus 285 ----~~~~l~~ll~--~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~--~~~~L~~L~-~~~~i~~~~l~~l~---~ 352 (413)
.+..+..++. .+|+|++|++..... .+......+. .+++|+.|. .++.+++.+...+. .
T Consensus 234 ~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i---------~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~ 304 (362)
T 2ra8_A 234 GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE---------QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD 304 (362)
T ss_dssp TCCSCGGGTGGGSCTTTCTTCCEEEEESCTT---------HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHH
T ss_pred ccchhHHHHHHHHhcCCCCCcCEEeCCCCCC---------chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcc
Confidence 1223333332 478888888763221 1111112221 356777777 66677777666654 3
Q ss_pred cCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecc
Q 044749 353 VCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQ 390 (413)
Q Consensus 353 ~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c 390 (413)
.+++|+.|+|++|.++++++..+...+ .-.+++++-
T Consensus 305 ~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 305 KIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp HHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSB
T ss_pred cCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCC
Confidence 468899999998889988888776544 345666553
No 80
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.95 E-value=1.1e-09 Score=93.52 Aligned_cols=150 Identities=17% Similarity=0.158 Sum_probs=93.9
Q ss_pred CCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHH
Q 044749 191 FSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVA 270 (413)
Q Consensus 191 ~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~ 270 (413)
+++|+.|+++++ .++.- . -...+++|++|++++|.+.+-. .+. .+++|++|+++++. ++......+ .
T Consensus 43 l~~L~~L~l~~n-~i~~l--~-~l~~l~~L~~L~l~~n~~~~~~--~l~----~l~~L~~L~l~~n~--l~~~~~~~l-~ 109 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTDL--T-GIEYAHNIKDLTINNIHATNYN--PIS----GLSNLERLRIMGKD--VTSDKIPNL-S 109 (197)
T ss_dssp HHTCCEEEEESS-CCSCC--T-TGGGCTTCSEEEEESCCCSCCG--GGT----TCTTCCEEEEECTT--CBGGGSCCC-T
T ss_pred cCCccEEeccCC-CccCh--H-HHhcCCCCCEEEccCCCCCcch--hhh----cCCCCCEEEeECCc--cCcccChhh-c
Confidence 367899999887 55531 1 1456888999999888665422 233 35588999888874 322112112 2
Q ss_pred hCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCcccccCCcccChhhHhhH
Q 044749 271 RSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLSGFREITPDYLSAI 350 (413)
Q Consensus 271 ~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~~~~~i~~~~l~~l 350 (413)
.+++|+.|+++++.-.......+..+++|++|+++... .+++. +.
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~--------------------------------~i~~~--~~- 154 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG--------------------------------AITDI--MP- 154 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT--------------------------------BCCCC--GG-
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC--------------------------------Ccccc--Hh-
Confidence 46888888888764323334555667777777776211 12211 12
Q ss_pred hhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeeccc
Q 044749 351 YPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQY 391 (413)
Q Consensus 351 ~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~ 391 (413)
...+++|++|++++|.+++-. .+..+++|+.|++.+.+
T Consensus 155 l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 155 LKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC-
T ss_pred hcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcc
Confidence 246788888888888876532 35678888888887754
No 81
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.93 E-value=6.2e-11 Score=119.89 Aligned_cols=198 Identities=11% Similarity=0.142 Sum_probs=96.9
Q ss_pred CCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccc-ccc-ccchhhhcc--CccCCCcceEEeccccCCCCHHHHH
Q 044749 191 FSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETE-VTD-DEVDWISLF--PEGETCLESLIFDCVDCAINFEALE 266 (413)
Q Consensus 191 ~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~-~~~~~l~~l--~~~~~~L~~L~L~~~~~~~~~~~l~ 266 (413)
+++|++|+|++| .+.. .+.....++++|++|++++|. ++. ..+..+..+ ...+++|++|+++++. ++ .+.
T Consensus 248 l~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~--l~--~ip 321 (636)
T 4eco_A 248 LKDLTDVEVYNC-PNLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN--LK--TFP 321 (636)
T ss_dssp CTTCCEEEEECC-TTCS-SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC--CS--SCC
T ss_pred cCCCCEEEecCC-cCCc-cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc--CC--ccC
Confidence 456666666666 3221 111223446666666666665 554 332223332 1123466666666663 11 111
Q ss_pred H--HHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCC-ccccc-CCccc
Q 044749 267 K--LVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKS-LVCLS-GFREI 342 (413)
Q Consensus 267 ~--l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~-L~~L~-~~~~i 342 (413)
. ....+++|+.|+++++.-.+.+. .+..+++|+.|+++..... .+...+..+++ |+.|. ..+.+
T Consensus 322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-----------~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 322 VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-----------EIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-----------ECCTTSEEECTTCCEEECCSSCC
T ss_pred chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-----------cccHhhhhhcccCcEEEccCCcC
Confidence 1 22345666666666653211222 3344566666666521110 11112344566 77776 33344
Q ss_pred ChhhHhhHhhc--CCCCCEEEeecccCChhhHHHHHh-------cCCCCCEEEeecccccCCCch-hhhhcccccccc
Q 044749 343 TPDYLSAIYPV--CANLTSLNFSYATITADQLKPVIC-------NCHKLQIFGPSIQYVMKDFRP-WLQRAKNFVNFG 410 (413)
Q Consensus 343 ~~~~l~~l~~~--~~~L~~L~Ls~~~it~~~l~~l~~-------~~~~L~~L~l~~c~~i~d~~~-~~~~~~~~~~~~ 410 (413)
+ .++..... +++|+.|++++|.++...-.. +. .+++|+.|++++|..- ..+. +...++++..+.
T Consensus 390 ~--~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 390 K--YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSIN 463 (636)
T ss_dssp S--SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEE
T ss_pred c--ccchhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEE
Confidence 3 22222222 247888888888765432111 12 5568888888887643 4443 344455555443
No 82
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.92 E-value=9.3e-10 Score=110.03 Aligned_cols=120 Identities=17% Similarity=0.163 Sum_probs=59.4
Q ss_pred CCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccC
Q 044749 166 YPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGE 245 (413)
Q Consensus 166 ~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~ 245 (413)
+++|+.|+++++.+..- .. ...+++|+.|+|++| .+.... . ...+++|+.|+|++|.+.+-. .+ ..+
T Consensus 42 L~~L~~L~l~~n~i~~l--~~-l~~l~~L~~L~Ls~N-~l~~~~--~-l~~l~~L~~L~Ls~N~l~~l~--~l----~~l 108 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGN-KLTDIK--P-LTNLKNLGWLFLDENKIKDLS--SL----KDL 108 (605)
T ss_dssp HTTCCCCBCTTCCCCCC--TT-GGGCTTCCEEECTTS-CCCCCG--G-GGGCTTCCEEECCSSCCCCCT--TS----TTC
T ss_pred CCCCCEEECcCCCCCCC--hH-HccCCCCCEEEeeCC-CCCCCh--h-hccCCCCCEEECcCCCCCCCh--hh----ccC
Confidence 35566666665544321 11 223466666666666 443221 1 345666777777766655421 12 234
Q ss_pred CCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceeccc
Q 044749 246 TCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTG 305 (413)
Q Consensus 246 ~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~ 305 (413)
++|+.|+|+++. +.. +.. ...+++|+.|+++++. +..+ ..+..+++|+.|+++
T Consensus 109 ~~L~~L~Ls~N~--l~~--l~~-l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 109 KKLKSLSLEHNG--ISD--ING-LVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLE 161 (605)
T ss_dssp TTCCEEECTTSC--CCC--CGG-GGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECC
T ss_pred CCCCEEEecCCC--CCC--Ccc-ccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECc
Confidence 466667666664 111 111 2235666666666652 1111 234455666666655
No 83
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.90 E-value=1.4e-08 Score=85.51 Aligned_cols=44 Identities=9% Similarity=0.036 Sum_probs=19.5
Q ss_pred HHHhCCcCcEEEcccc-ccccccchhhhccCccCCCcceEEeccc
Q 044749 213 IASKCRQLRVLDLIET-EVTDDEVDWISLFPEGETCLESLIFDCV 256 (413)
Q Consensus 213 ~~~~~~~L~~L~L~~~-~i~~~~~~~l~~l~~~~~~L~~L~L~~~ 256 (413)
+...++.|++|+|++| .|++++...+......+++|++|+|+++
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n 75 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT 75 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC
Confidence 3344444555555554 4444443333333233444455554444
No 84
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.90 E-value=1.9e-09 Score=104.40 Aligned_cols=208 Identities=18% Similarity=0.132 Sum_probs=146.6
Q ss_pred HHhcCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCC
Q 044749 123 ARGRFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCC 202 (413)
Q Consensus 123 l~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c 202 (413)
....+++++.|+++++. +.. ++ . ...+++|+.|+++++.++.-. ...+++|++|++++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~-l~~---~~------------~-l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N 95 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSS-ITD---MT------------G-IEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSN 95 (457)
T ss_dssp EHHHHTTCCEEECCSSC-CCC---CT------------T-GGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSS
T ss_pred ChhHcCCCCEEEccCCC-ccc---Ch------------h-hcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCC
Confidence 45668999999998753 221 11 1 137899999999999776531 234588999999998
Q ss_pred CCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEccc
Q 044749 203 EGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNR 282 (413)
Q Consensus 203 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 282 (413)
.++... ...+++|++|++++|.++.-. +. .+++|+.|+++++. ++. +. ...+++|+.|++++
T Consensus 96 -~l~~~~----~~~l~~L~~L~L~~N~l~~l~---~~----~l~~L~~L~l~~N~--l~~--l~--l~~l~~L~~L~l~~ 157 (457)
T 3bz5_A 96 -KLTNLD----VTPLTKLTYLNCDTNKLTKLD---VS----QNPLLTYLNCARNT--LTE--ID--VSHNTQLTELDCHL 157 (457)
T ss_dssp -CCSCCC----CTTCTTCCEEECCSSCCSCCC---CT----TCTTCCEEECTTSC--CSC--CC--CTTCTTCCEEECTT
T ss_pred -CCceee----cCCCCcCCEEECCCCcCCeec---CC----CCCcCCEEECCCCc--cce--ec--cccCCcCCEEECCC
Confidence 666532 457999999999999987632 33 45699999999885 221 11 23579999999998
Q ss_pred ccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEE
Q 044749 283 HVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLN 361 (413)
Q Consensus 283 ~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~ 361 (413)
+..+..+ -+..+++|++|+++..... ... +..+++|+.|. +...++... ...+++|+.|+
T Consensus 158 n~~~~~~--~~~~l~~L~~L~ls~n~l~-------~l~------l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~ 218 (457)
T 3bz5_A 158 NKKITKL--DVTPQTQLTTLDCSFNKIT-------ELD------VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLD 218 (457)
T ss_dssp CSCCCCC--CCTTCTTCCEEECCSSCCC-------CCC------CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEE
T ss_pred CCccccc--ccccCCcCCEEECCCCccc-------eec------cccCCCCCEEECcCCcCCeec----cccCCCCCEEE
Confidence 7433333 2456899999999843322 111 45678888887 433554432 25679999999
Q ss_pred eecccCChhhHHHHHhcCCCCCEEEeecccc
Q 044749 362 FSYATITADQLKPVICNCHKLQIFGPSIQYV 392 (413)
Q Consensus 362 Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~ 392 (413)
+++|.++.- . +..+++|+.|+++++..
T Consensus 219 Ls~N~l~~i--p--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 219 CSSNKLTEI--D--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp CCSSCCSCC--C--CTTCTTCSEEECCSSCC
T ss_pred CcCCccccc--C--ccccCCCCEEEeeCCcC
Confidence 999997762 2 57899999999999864
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.90 E-value=3.5e-09 Score=96.25 Aligned_cols=169 Identities=17% Similarity=0.149 Sum_probs=87.6
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+++|+.|+++++.+++- .. ...+++|+.|++++| .++... . ...+++|+.|++++|.+.+-. .+. .
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~-~~~l~~L~~L~L~~n-~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~--~l~----~ 110 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGN-KLTDIK--P-LANLKNLGWLFLDENKVKDLS--SLK----D 110 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TT-GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSCCCCGG--GGT----T
T ss_pred hcCcccEEEccCCCcccC--hh-HhcCCCCCEEEccCC-ccCCCc--c-cccCCCCCEEECCCCcCCCCh--hhc----c
Confidence 346677777766654421 11 233466777777766 444321 1 345667777777766655421 122 3
Q ss_pred CCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHH
Q 044749 245 ETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYI 324 (413)
Q Consensus 245 ~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~ 324 (413)
+++|+.|+++++. +.. +.. ...+++|+.|+++++. +..+ ..+..+++|++|+++.
T Consensus 111 l~~L~~L~L~~n~--i~~--~~~-l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~------------------ 165 (291)
T 1h6t_A 111 LKKLKSLSLEHNG--ISD--ING-LVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLED------------------ 165 (291)
T ss_dssp CTTCCEEECTTSC--CCC--CGG-GGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCS------------------
T ss_pred CCCCCEEECCCCc--CCC--Chh-hcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccC------------------
Confidence 4466666666663 111 111 1235666666666542 1111 2234455555555542
Q ss_pred HHHhhCCCcccccCCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccc
Q 044749 325 AAFAACKSLVCLSGFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYV 392 (413)
Q Consensus 325 ~~~~~~~~L~~L~~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~ 392 (413)
+.+++.. . ...+++|++|+|++|.+++-. . +..+++|+.|++.++..
T Consensus 166 ---------------N~l~~~~--~-l~~l~~L~~L~L~~N~i~~l~--~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 166 ---------------NQISDIV--P-LAGLTKLQNLYLSKNHISDLR--A-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp ---------------SCCCCCG--G-GTTCTTCCEEECCSSCCCBCG--G-GTTCTTCSEEEEEEEEE
T ss_pred ---------------Cccccch--h-hcCCCccCEEECCCCcCCCCh--h-hccCCCCCEEECcCCcc
Confidence 1222211 1 245677777777777765432 2 45677777777777653
No 86
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.90 E-value=5.2e-11 Score=124.43 Aligned_cols=255 Identities=11% Similarity=-0.001 Sum_probs=140.0
Q ss_pred cCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCC
Q 044749 126 RFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGF 205 (413)
Q Consensus 126 ~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~ 205 (413)
-.++++.|+++++. +.. +.+..+ ..+++|+.|+|+++......-......+++|++|+|++| .+
T Consensus 22 lp~~l~~LdLs~N~-i~~--i~~~~~------------~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l 85 (844)
T 3j0a_A 22 VLNTTERLLLSFNY-IRT--VTASSF------------PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KI 85 (844)
T ss_dssp SCTTCCEEEEESCC-CCE--ECSSSC------------SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CC
T ss_pred CCCCcCEEECCCCc-CCc--cChhHC------------cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cC
Confidence 45788999998753 221 122222 267899999999883211100011234578999999988 55
Q ss_pred ChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccC
Q 044749 206 GTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVS 285 (413)
Q Consensus 206 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 285 (413)
.... .....++++|++|+|++|.+.+..+.. .....+++|++|+|+++. +...........+++|+.|+++++.-
T Consensus 86 ~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N~--l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 86 YFLH-PDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKNQ--IRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp CEEC-TTSSCSCSSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESCC--CCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred cccC-HhHccCCcccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCCc--ccccccchhHhhCCCCCEEECCCCcC
Confidence 4321 122456899999999999887644211 112356699999999885 11111111234589999999988621
Q ss_pred ----hHHHHHHHhcCCCCceecccCcCCCc-ccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHh--------
Q 044749 286 ----IRQLYRLMVRAPQLTHLGTGKYGPSE-VAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIY-------- 351 (413)
Q Consensus 286 ----~~~l~~ll~~~p~L~~L~l~~~~~~~-~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~-------- 351 (413)
...+..+.. ++|+.|+++...... .+... ......+. ..+|+.|. ....+++.....+.
T Consensus 161 ~~~~~~~l~~l~~--~~L~~L~L~~n~l~~~~~~~~----~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l 233 (844)
T 3j0a_A 161 FLVCEHELEPLQG--KTLSFFSLAANSLYSRVSVDW----GKCMNPFR-NMVLEILDVSGNGWTVDITGNFSNAISKSQA 233 (844)
T ss_dssp CCCCSGGGHHHHH--CSSCCCEECCSBSCCCCCCCC----CSSSCTTT-TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred CeeCHHHcccccC--CccceEECCCCccccccccch----hhcCCccc-cCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence 122222211 789999887432111 00000 00000001 11377776 22222221111111
Q ss_pred ---------------------------h--cCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCCCchhhhh
Q 044749 352 ---------------------------P--VCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKDFRPWLQR 402 (413)
Q Consensus 352 ---------------------------~--~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~~~~~~ 402 (413)
. .+++|++|+|++|.++... ...+..+++|+.|+|.++..-...+..+..
T Consensus 234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 312 (844)
T 3j0a_A 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN-SRVFETLKDLKVLNLAYNKINKIADEAFYG 312 (844)
T ss_dssp SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC-SCCSSSCCCCCEEEEESCCCCEECTTTTTT
T ss_pred cceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC-hhhhhcCCCCCEEECCCCcCCCCChHHhcC
Confidence 1 1368999999998865432 223467899999999998653333344555
Q ss_pred ccccccc
Q 044749 403 AKNFVNF 409 (413)
Q Consensus 403 ~~~~~~~ 409 (413)
++++..+
T Consensus 313 l~~L~~L 319 (844)
T 3j0a_A 313 LDNLQVL 319 (844)
T ss_dssp CSSCCEE
T ss_pred CCCCCEE
Confidence 5555544
No 87
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.89 E-value=1.4e-09 Score=108.96 Aligned_cols=55 Identities=18% Similarity=0.142 Sum_probs=29.9
Q ss_pred CCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccc
Q 044749 166 YPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVT 231 (413)
Q Consensus 166 ~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~ 231 (413)
+++|+.|+|+++.++. +...+++|++|+|++| .++.. . ..+++|+.|++++|.++
T Consensus 80 l~~L~~L~Ls~N~l~~-----lp~~l~~L~~L~Ls~N-~l~~l--~---~~l~~L~~L~L~~N~l~ 134 (622)
T 3g06_A 80 PPELRTLEVSGNQLTS-----LPVLPPGLLELSIFSN-PLTHL--P---ALPSGLCKLWIFGNQLT 134 (622)
T ss_dssp CTTCCEEEECSCCCSC-----CCCCCTTCCEEEECSC-CCCCC--C---CCCTTCCEEECCSSCCS
T ss_pred CCCCCEEEcCCCcCCc-----CCCCCCCCCEEECcCC-cCCCC--C---CCCCCcCEEECCCCCCC
Confidence 3667777777765542 1113466777777666 33321 0 13556666666665543
No 88
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.89 E-value=2e-10 Score=106.55 Aligned_cols=245 Identities=13% Similarity=0.083 Sum_probs=146.3
Q ss_pred HHhcCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCC
Q 044749 123 ARGRFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCC 202 (413)
Q Consensus 123 l~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c 202 (413)
.+..+++++.|+++++. +.. +.+..+ ..+++|+.|+++++.++.-. ...+++|++|+++++
T Consensus 73 ~~~~l~~L~~L~L~~n~-l~~--~~~~~~------------~~l~~L~~L~L~~n~l~~l~----~~~~~~L~~L~l~~n 133 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNK-ISK--IHEKAF------------SPLRKLQKLYISKNHLVEIP----PNLPSSLVELRIHDN 133 (332)
T ss_dssp TTTTCTTCCEEECCSSC-CCE--ECGGGS------------TTCTTCCEEECCSSCCCSCC----SSCCTTCCEEECCSS
T ss_pred HhhCCCCCcEEECCCCc-cCc--cCHhHh------------hCcCCCCEEECCCCcCCccC----ccccccCCEEECCCC
Confidence 45677788888887653 211 111111 26799999999998765210 112268999999998
Q ss_pred CCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEccc
Q 044749 203 EGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNR 282 (413)
Q Consensus 203 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 282 (413)
.++... ......+++|++|++++|.+++.+.. ...+. .. +|+.|+++++. ++. +. ....++|+.|++++
T Consensus 134 -~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~-~l-~L~~L~l~~n~--l~~--l~--~~~~~~L~~L~l~~ 202 (332)
T 2ft3_A 134 -RIRKVP-KGVFSGLRNMNCIEMGGNPLENSGFE-PGAFD-GL-KLNYLRISEAK--LTG--IP--KDLPETLNELHLDH 202 (332)
T ss_dssp -CCCCCC-SGGGSSCSSCCEEECCSCCCBGGGSC-TTSSC-SC-CCSCCBCCSSB--CSS--CC--SSSCSSCSCCBCCS
T ss_pred -ccCccC-HhHhCCCccCCEEECCCCccccCCCC-ccccc-CC-ccCEEECcCCC--CCc--cC--ccccCCCCEEECCC
Confidence 554321 11245699999999999988653210 12222 22 89999998874 111 00 01136899999988
Q ss_pred ccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEE
Q 044749 283 HVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLN 361 (413)
Q Consensus 283 ~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~ 361 (413)
+.-.......+..+++|+.|+++...... .. ...+..+++|+.|. ..+.++ .++.....+++|++|+
T Consensus 203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-------~~---~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRM-------IE---NGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVY 270 (332)
T ss_dssp SCCCCCCTTSSTTCTTCSCCBCCSSCCCC-------CC---TTGGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEE
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCc-------CC---hhHhhCCCCCCEEECCCCcCe--ecChhhhcCccCCEEE
Confidence 63111112345668899999988432221 11 11245678888887 433554 2333345789999999
Q ss_pred eecccCChhhHHHHHh-----cCCCCCEEEeeccccc--CCCchhhhhccccccc
Q 044749 362 FSYATITADQLKPVIC-----NCHKLQIFGPSIQYVM--KDFRPWLQRAKNFVNF 409 (413)
Q Consensus 362 Ls~~~it~~~l~~l~~-----~~~~L~~L~l~~c~~i--~d~~~~~~~~~~~~~~ 409 (413)
|++|.++......+.. ..++|+.|++.+++.. .-.+..++.++++..+
T Consensus 271 l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l 325 (332)
T 2ft3_A 271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325 (332)
T ss_dssp CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred CCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhh
Confidence 9999876554333221 1567999999987643 2233445555555544
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.87 E-value=6.6e-10 Score=113.36 Aligned_cols=246 Identities=13% Similarity=0.073 Sum_probs=144.7
Q ss_pred CCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCCh
Q 044749 128 RRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGT 207 (413)
Q Consensus 128 ~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~ 207 (413)
++++.|+++++.- .. ++ .. ....+++|+.|+++++.++......+ ..+++|++|+|++| .++.
T Consensus 25 ~~l~~L~Ls~n~l-~~---~~-------~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~ 87 (680)
T 1ziw_A 25 TNITVLNLTHNQL-RR---LP-------AA----NFTRYSQLTSLDVGFNTISKLEPELC-QKLPMLKVLNLQHN-ELSQ 87 (680)
T ss_dssp TTCSEEECCSSCC-CC---CC-------GG----GGGGGTTCSEEECCSSCCCCCCTTHH-HHCTTCCEEECCSS-CCCC
T ss_pred CCCcEEECCCCCC-CC---cC-------HH----HHhCCCcCcEEECCCCccCccCHHHH-hcccCcCEEECCCC-ccCc
Confidence 6888888886531 11 11 00 11367899999999886654322223 34589999999988 5543
Q ss_pred HHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCC-CCHHHHHHHHHhCCCCcEEEcccccCh
Q 044749 208 CGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCA-INFEALEKLVARSPFLRKLRLNRHVSI 286 (413)
Q Consensus 208 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~ 286 (413)
..- ....++++|++|++++|.+..-....+. .+++|++|+++++.-. +... ....+++|++|+++++.-.
T Consensus 88 l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 88 LSD-KTFAFCTNLTELHLMSNSIQKIKNNPFV----KQKNLITLDLSHNGLSSTKLG----TQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp CCT-TTTTTCTTCSEEECCSSCCCCCCSCTTT----TCTTCCEEECCSSCCSCCCCC----SSSCCTTCCEEECCSSCCC
T ss_pred cCh-hhhccCCCCCEEECCCCccCccChhHcc----ccCCCCEEECCCCcccccCch----hhcccccCCEEEccCCccc
Confidence 211 1235689999999999987654322233 4569999999988411 1111 1135789999999886311
Q ss_pred HHHHHHH--hcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhh--cCCCCCEEE
Q 044749 287 RQLYRLM--VRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYP--VCANLTSLN 361 (413)
Q Consensus 287 ~~l~~ll--~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~--~~~~L~~L~ 361 (413)
......+ ..+++|++|+++...... .....+..+++|+.|. ....+.+.....+.. ..++|++|+
T Consensus 159 ~~~~~~~~~~~~~~L~~L~L~~n~l~~----------~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~ 228 (680)
T 1ziw_A 159 ALKSEELDIFANSSLKKLELSSNQIKE----------FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228 (680)
T ss_dssp CBCHHHHGGGTTCEESEEECTTCCCCC----------BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEE
T ss_pred ccCHHHhhccccccccEEECCCCcccc----------cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEE
Confidence 1112222 246889999987432111 0111234566777766 222444433333321 348899999
Q ss_pred eecccCChhhHHHHHhcC--CCCCEEEeecccccCCCchhhhhcccccccc
Q 044749 362 FSYATITADQLKPVICNC--HKLQIFGPSIQYVMKDFRPWLQRAKNFVNFG 410 (413)
Q Consensus 362 Ls~~~it~~~l~~l~~~~--~~L~~L~l~~c~~i~d~~~~~~~~~~~~~~~ 410 (413)
+++|.++......+ ..+ ++|+.|++++|..-.-...++..+.++..+.
T Consensus 229 L~~n~l~~~~~~~~-~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (680)
T 1ziw_A 229 LSNSQLSTTSNTTF-LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278 (680)
T ss_dssp CTTSCCCEECTTTT-GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCcccccChhHh-hccCcCCCCEEECCCCCcCccCcccccCcccccEee
Confidence 99998765432222 334 4599999999865333334555555555443
No 90
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.85 E-value=3.3e-08 Score=83.13 Aligned_cols=129 Identities=11% Similarity=0.090 Sum_probs=98.8
Q ss_pred CchHHHHHHHhhCCCCcEEeeeCC-ccCHHHHHHHHHhCC---CCcEEEeCCCCCCChHHH---HHHHHhCCcCcEEEcc
Q 044749 154 HFGPWVCVLANAYPWLEKVYLKRM-SITDDDLALLAESFS---GFKELTLVCCEGFGTCGL---AFIASKCRQLRVLDLI 226 (413)
Q Consensus 154 ~~~~~l~~l~~~~~~L~~L~L~~~-~l~~~~l~~l~~~~~---~L~~L~L~~c~~~~~~~l---~~~~~~~~~L~~L~L~ 226 (413)
.+...+..+...-+.|++|+|+++ .+++++...+++.+. .|+.|+|++| .+++.+. ......-+.|++|+|+
T Consensus 28 ~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 28 DVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp CHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred CHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecC
Confidence 356677777778899999999986 999999988888765 4999999999 8988874 4444567889999999
Q ss_pred ccccccccchhhhccCccCCCcceEEeccccC-CCCHHHHH---HHHHhCCCCcEEEcccc
Q 044749 227 ETEVTDDEVDWISLFPEGETCLESLIFDCVDC-AINFEALE---KLVARSPFLRKLRLNRH 283 (413)
Q Consensus 227 ~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~~l~---~l~~~~~~L~~L~l~~~ 283 (413)
+|.|++++...+.......+.|++|+|.++.. .+++.+-. ......++|++|+++.+
T Consensus 107 ~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 107 SNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp SSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 99999998776666555667799999986643 46665533 33344678888887653
No 91
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.82 E-value=2.8e-10 Score=102.33 Aligned_cols=127 Identities=14% Similarity=0.060 Sum_probs=66.8
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGET 246 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~ 246 (413)
++|++|+|+++.++.-.... ...+++|++|+|+++ .++... ..+...+++|++|++++|.+..-....+. .++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~i~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~ 109 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKA-FHRLTKLRLLYLNDN-KLQTLP-AGIFKELKNLETLWVTDNKLQALPIGVFD----QLV 109 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTS-SSSCTTCCEEECCSS-CCSCCC-TTTTSSCTTCCEEECCSSCCCCCCTTTTT----TCS
T ss_pred CCCCEEECcCCCCCeeCHHH-hcCCCCCCEEECCCC-ccCeeC-hhhhcCCCCCCEEECCCCcCCcCCHhHcc----ccc
Confidence 56788888877554321111 123467888888776 443211 11224577788888887776653322222 345
Q ss_pred CcceEEeccccC-CCCHHHHHHHHHhCCCCcEEEcccccChHHH-HHHHhcCCCCceeccc
Q 044749 247 CLESLIFDCVDC-AINFEALEKLVARSPFLRKLRLNRHVSIRQL-YRLMVRAPQLTHLGTG 305 (413)
Q Consensus 247 ~L~~L~L~~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l-~~ll~~~p~L~~L~l~ 305 (413)
+|++|+++++.- .+... ....+++|++|+++++. +..+ ...+..+++|++|+++
T Consensus 110 ~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLPPR----VFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp SCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCeeCHH----HhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEec
Confidence 777777777631 11111 11246777777777652 1111 1223445666666665
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.80 E-value=1.4e-09 Score=97.77 Aligned_cols=180 Identities=12% Similarity=0.051 Sum_probs=100.9
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+++|+.|+++++.+++- .. ...+++|++|++++| .++.. . ....+++|++|++++|.++......+. .
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~-l~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~~~----~ 107 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QG-IQYLPNVRYLALGGN-KLHDI--S-ALKELTNLTYLILTGNQLQSLPNGVFD----K 107 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TT-GGGCTTCCEEECTTS-CCCCC--G-GGTTCTTCCEEECTTSCCCCCCTTTTT----T
T ss_pred cccceeeeeeCCCCcccc--cc-cccCCCCcEEECCCC-CCCCc--h-hhcCCCCCCEEECCCCccCccChhHhc----C
Confidence 457777777777755421 11 223577777777777 44432 1 234577777777777776643322222 3
Q ss_pred CCCcceEEeccccCC-CCHHHHHHHHHhCCCCcEEEcccccChHHH-HHHHhcCCCCceecccCcCCCcccccCCCChhh
Q 044749 245 ETCLESLIFDCVDCA-INFEALEKLVARSPFLRKLRLNRHVSIRQL-YRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPD 322 (413)
Q Consensus 245 ~~~L~~L~L~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l-~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~ 322 (413)
+++|++|+++++.-. +... ....+++|+.|+++++. +..+ ...+..+++|+.|+++.
T Consensus 108 l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~---------------- 166 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDG----VFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSY---------------- 166 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS----------------
T ss_pred CcCCCEEECCCCcCCccCHH----HhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCC----------------
Confidence 447777777766311 1110 11235667777776652 1111 11233445555555542
Q ss_pred HHHHHhhCCCcccccCCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCC
Q 044749 323 YIAAFAACKSLVCLSGFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKD 395 (413)
Q Consensus 323 ~~~~~~~~~~L~~L~~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d 395 (413)
+.++... ......+++|++|+|++|.++... ...+..+++|+.|++.+++...+
T Consensus 167 -----------------n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 167 -----------------NQLQSLP-EGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp -----------------SCCCCCC-TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCC
T ss_pred -----------------CCcCccC-HHHhcCCccCCEEECCCCcCCccC-HHHHhCCcCCCEEEccCCCcccc
Confidence 1222111 122246789999999999976432 23357899999999999765443
No 93
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.79 E-value=2e-09 Score=107.81 Aligned_cols=187 Identities=14% Similarity=0.035 Sum_probs=98.6
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccc--cchh-----
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDD--EVDW----- 237 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~--~~~~----- 237 (413)
.+++|+.|+++++.++. +...+++|+.|++++| .++.. ...+++|++|+|++|.++.- ....
T Consensus 99 ~l~~L~~L~Ls~N~l~~-----l~~~l~~L~~L~L~~N-~l~~l-----p~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~ 167 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTH-----LPALPSGLCKLWIFGN-QLTSL-----PVLPPGLQELSVSDNQLASLPALPSELCKLW 167 (622)
T ss_dssp CCTTCCEEEECSCCCCC-----CCCCCTTCCEEECCSS-CCSCC-----CCCCTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred CCCCCCEEECcCCcCCC-----CCCCCCCcCEEECCCC-CCCcC-----CCCCCCCCEEECcCCcCCCcCCccCCCCEEE
Confidence 45788888888886553 1113467888888877 44431 12357788888888775541 1000
Q ss_pred -----hhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcc
Q 044749 238 -----ISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEV 312 (413)
Q Consensus 238 -----l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~ 312 (413)
+..++..+++|+.|+++++. ++. +....++|+.|+++++. +..+. ...++|+.|+++.....
T Consensus 168 L~~N~l~~l~~~~~~L~~L~Ls~N~--l~~-----l~~~~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N~L~-- 234 (622)
T 3g06_A 168 AYNNQLTSLPMLPSGLQELSVSDNQ--LAS-----LPTLPSELYKLWAYNNR-LTSLP---ALPSGLKELIVSGNRLT-- 234 (622)
T ss_dssp CCSSCCSCCCCCCTTCCEEECCSSC--CSC-----CCCCCTTCCEEECCSSC-CSSCC---CCCTTCCEEECCSSCCS--
T ss_pred CCCCCCCCCcccCCCCcEEECCCCC--CCC-----CCCccchhhEEECcCCc-ccccC---CCCCCCCEEEccCCccC--
Confidence 11122233456666665553 110 11123556666665542 11111 12356777776632111
Q ss_pred cccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeeccc
Q 044749 313 AQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQY 391 (413)
Q Consensus 313 ~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~ 391 (413)
. +...+++|+.|. +.+.++ .+...+++|+.|+|++|.++ .+...+..+++|+.|+|++++
T Consensus 235 -----~-------lp~~l~~L~~L~Ls~N~L~-----~lp~~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 235 -----S-------LPVLPSELKELMVSGNRLT-----SLPMLPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp -----C-------CCCCCTTCCEEECCSSCCS-----CCCCCCTTCCEEECCSSCCC--SCCGGGGGSCTTCEEECCSCC
T ss_pred -----c-------CCCCCCcCcEEECCCCCCC-----cCCcccccCcEEeCCCCCCC--cCCHHHhhccccCEEEecCCC
Confidence 0 003345666666 332333 12224577888888888765 233335677888888888876
Q ss_pred ccC
Q 044749 392 VMK 394 (413)
Q Consensus 392 ~i~ 394 (413)
...
T Consensus 296 l~~ 298 (622)
T 3g06_A 296 LSE 298 (622)
T ss_dssp CCH
T ss_pred CCC
Confidence 433
No 94
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.78 E-value=9.9e-09 Score=83.18 Aligned_cols=37 Identities=19% Similarity=0.078 Sum_probs=26.4
Q ss_pred hcCCCCCEEEeecccCChhhH--HHHHhcCCCCCEEEee
Q 044749 352 PVCANLTSLNFSYATITADQL--KPVICNCHKLQIFGPS 388 (413)
Q Consensus 352 ~~~~~L~~L~Ls~~~it~~~l--~~l~~~~~~L~~L~l~ 388 (413)
..+++|++|++++|.++...- ...+..+++|+.|+++
T Consensus 110 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 110 KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 567888888888888654432 2456788888888775
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.77 E-value=8.9e-09 Score=93.51 Aligned_cols=145 Identities=16% Similarity=0.183 Sum_probs=101.1
Q ss_pred HhcCCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCC
Q 044749 124 RGRFRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCE 203 (413)
Q Consensus 124 ~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~ 203 (413)
...+++++.+++.++. +.. ++ . ...+++|+.|+++++.+++... ...+++|+.|.+++|
T Consensus 42 ~~~l~~L~~L~l~~~~-i~~---~~------------~-~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n- 100 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-IKS---VQ------------G-IQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDEN- 100 (291)
T ss_dssp HHHHHTCCEEECTTSC-CCC---CT------------T-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSS-
T ss_pred hhhcCcccEEEccCCC-ccc---Ch------------h-HhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCC-
Confidence 4567889999998753 211 10 1 2368999999999997765321 345689999999998
Q ss_pred CCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccc
Q 044749 204 GFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRH 283 (413)
Q Consensus 204 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 283 (413)
.++.. .. ...+++|++|++++|.+.+- ..+. .+++|+.|+++++. ++. +. ....+++|+.|+++++
T Consensus 101 ~l~~~--~~-l~~l~~L~~L~L~~n~i~~~--~~l~----~l~~L~~L~l~~n~--l~~--~~-~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 101 KVKDL--SS-LKDLKKLKSLSLEHNGISDI--NGLV----HLPQLESLYLGNNK--ITD--IT-VLSRLTKLDTLSLEDN 166 (291)
T ss_dssp CCCCG--GG-GTTCTTCCEEECTTSCCCCC--GGGG----GCTTCCEEECCSSC--CCC--CG-GGGGCTTCSEEECCSS
T ss_pred cCCCC--hh-hccCCCCCEEECCCCcCCCC--hhhc----CCCCCCEEEccCCc--CCc--ch-hhccCCCCCEEEccCC
Confidence 66542 22 56799999999999998763 2233 45699999999985 221 11 2345899999999987
Q ss_pred cChHHHHHHHhcCCCCceeccc
Q 044749 284 VSIRQLYRLMVRAPQLTHLGTG 305 (413)
Q Consensus 284 ~~~~~l~~ll~~~p~L~~L~l~ 305 (413)
. +..+.. +..+++|++|+++
T Consensus 167 ~-l~~~~~-l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 167 Q-ISDIVP-LAGLTKLQNLYLS 186 (291)
T ss_dssp C-CCCCGG-GTTCTTCCEEECC
T ss_pred c-cccchh-hcCCCccCEEECC
Confidence 3 222222 6678888888887
No 96
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.77 E-value=1.8e-09 Score=87.70 Aligned_cols=13 Identities=38% Similarity=0.409 Sum_probs=6.4
Q ss_pred HHhcCCCCceecc
Q 044749 292 LMVRAPQLTHLGT 304 (413)
Q Consensus 292 ll~~~p~L~~L~l 304 (413)
.+..+++|+.|++
T Consensus 135 ~~~~l~~L~~L~l 147 (149)
T 2je0_A 135 VFKLLPQLTYLDG 147 (149)
T ss_dssp HHHHCTTCCEETT
T ss_pred HHHHCCCcccccC
Confidence 3444555555544
No 97
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.76 E-value=4e-10 Score=102.43 Aligned_cols=37 Identities=14% Similarity=0.009 Sum_probs=20.6
Q ss_pred hcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecc
Q 044749 352 PVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQ 390 (413)
Q Consensus 352 ~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c 390 (413)
..+++|++|+|++|.++. +..-+...++|+.|+|.+.
T Consensus 169 ~~l~~L~~L~L~~N~l~~--ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 169 NGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSC
T ss_pred cCcCCCCEEECCCCcCCc--cChhhcccccCCeEEeCCC
Confidence 345667777777766541 2222234556777777653
No 98
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.74 E-value=8e-09 Score=102.89 Aligned_cols=38 Identities=21% Similarity=0.081 Sum_probs=23.4
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhC--CCCcEEEeCCC
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESF--SGFKELTLVCC 202 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~--~~L~~L~L~~c 202 (413)
..++|+.|++.++.+++..+..+.... ++|++|++++|
T Consensus 247 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 286 (562)
T 3a79_B 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286 (562)
T ss_dssp SCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred ccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEecc
Confidence 556777777777766666554443322 36777777666
No 99
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.73 E-value=7.7e-09 Score=85.68 Aligned_cols=41 Identities=15% Similarity=-0.028 Sum_probs=32.1
Q ss_pred hcCCCCCEEEeecccCChhhH--HHHHhcCCCCCEEEeecccc
Q 044749 352 PVCANLTSLNFSYATITADQL--KPVICNCHKLQIFGPSIQYV 392 (413)
Q Consensus 352 ~~~~~L~~L~Ls~~~it~~~l--~~l~~~~~~L~~L~l~~c~~ 392 (413)
..+++|++|++++|.++.... ...+..+++|+.|++.+|..
T Consensus 117 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 117 KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 467899999999998654432 24678899999999999864
No 100
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.73 E-value=7.1e-10 Score=99.97 Aligned_cols=195 Identities=17% Similarity=0.074 Sum_probs=119.2
Q ss_pred CCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccC-CCCHHHHHHHHH
Q 044749 192 SGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDC-AINFEALEKLVA 270 (413)
Q Consensus 192 ~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~~l~~l~~ 270 (413)
++|+.|+++++ .++..... ....+++|++|++++|.+.......+. .+++|+.|+++++.- .+... ...
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~----~~~ 97 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQ----SLSHLSTLILTGNPIQSLALG----AFS 97 (276)
T ss_dssp TTCCEEECTTC-CCCEECTT-TTTTCTTCSEEECTTCCCCEECTTTTT----TCTTCCEEECTTCCCCEECTT----TTT
T ss_pred CCccEEECCCC-cccccCHh-HhccccCCcEEECCCCcCCccCHHHcc----CCcCCCEEECCCCccCccChh----hhc
Confidence 46999999998 66543211 235689999999999987754422233 456999999998841 11111 123
Q ss_pred hCCCCcEEEcccccChHHHH-HHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChh---
Q 044749 271 RSPFLRKLRLNRHVSIRQLY-RLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPD--- 345 (413)
Q Consensus 271 ~~~~L~~L~l~~~~~~~~l~-~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~--- 345 (413)
.+++|+.|+++++.. ..+. ..+..+++|++|+++..... ...+...+..+++|+.|. +...++..
T Consensus 98 ~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 98 GLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQ---------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp TCTTCCEEECTTSCC-CCSTTCCCTTCTTCCEEECCSSCCC---------CCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCccccEEECCCCCc-cccCchhcccCCCCCEEECcCCccc---------eecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 579999999988631 1111 12567899999999843221 111222456678899888 33344432
Q ss_pred hHhhHhhcCCCCC-EEEeecccCChhhHHHHHhcCCCCCEEEeecccccCCCchh-hhhcccccccc
Q 044749 346 YLSAIYPVCANLT-SLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKDFRPW-LQRAKNFVNFG 410 (413)
Q Consensus 346 ~l~~l~~~~~~L~-~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~~~-~~~~~~~~~~~ 410 (413)
.+..+ ...+.|. +|++++|.++..... .....+|+.|+++++. ++..... +..+.++..+.
T Consensus 168 ~~~~l-~~L~~l~l~L~ls~n~l~~~~~~--~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 168 DLRVL-HQMPLLNLSLDLSLNPMNFIQPG--AFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIW 230 (276)
T ss_dssp GGHHH-HTCTTCCEEEECCSSCCCEECTT--SSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEE
T ss_pred Hhhhh-hhccccceeeecCCCcccccCcc--ccCCCcccEEECCCCc-eeecCHhHhcccccccEEE
Confidence 33332 2334444 899999987643211 1234589999999986 4444433 45566555544
No 101
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.72 E-value=5.9e-10 Score=100.23 Aligned_cols=37 Identities=11% Similarity=0.129 Sum_probs=17.1
Q ss_pred cCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecc
Q 044749 353 VCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQ 390 (413)
Q Consensus 353 ~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c 390 (413)
.+++|++|+|++|.++.-. ...+..+++|+.|+|.++
T Consensus 179 ~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 179 KLTELKTLKLDNNQLKRVP-EGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp TCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred cCCCcCEEECCCCcCCcCC-HHHhccccCCCEEEecCC
Confidence 3455555555555543211 112234555555555543
No 102
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.69 E-value=1.4e-07 Score=88.02 Aligned_cols=211 Identities=12% Similarity=0.118 Sum_probs=126.0
Q ss_pred HHHHHHhhcCCcchhhH-HHHHhHHHHHhhcCCCCeEEecccccCChhHHHhcCCCccEEEecCCCCCcccCCCCCCCCC
Q 044749 75 VLENVLQFLTSRRDRNA-ASLVCKSWWRAEALTRSELFIGNCYAVSPDRARGRFRRVRSVVLKGKPRFADFNLMPPDWGA 153 (413)
Q Consensus 75 il~~Ifs~L~~~~d~~~-~~~vcr~W~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~ 153 (413)
.+..++.|| ...+..+ .++|+..|. . ..... .... ........++++|+.|.+.+.. ..+..+ .|-.
T Consensus 93 ~~~~~~~fl-~~~~~~~v~~L~lg~~~-~---~~~~~--~~~~-~~L~~s~~~l~~L~~L~l~~~~-~e~~~i---s~~~ 160 (362)
T 2ra8_A 93 GVNLMDKIL-KDKKLPSLKQITIGXWG-Y---EGEDC--SDIA-DGIVENKEKFAHFEGLFWGDID-FEEQEI---SWIE 160 (362)
T ss_dssp TCCHHHHHH-HCTTGGGCSEEEECCCC-S---SSCCS--HHHH-HHHHTTHHHHTTCSEEEECCCC-TTTCCG---GGCB
T ss_pred HHHHHHHHh-cCCCchhcceEEEcccc-c---CCCcH--HHHH-HHHHHhhhhcchhhheeecCcc-hhhccc---cccc
Confidence 455666688 4666665 366776663 1 10000 0000 0011224578999999886531 111111 1211
Q ss_pred CchHHHHHHHhhCCCCcEEeeeCC-ccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHH-hCCcCcEEEcccc--c
Q 044749 154 HFGPWVCVLANAYPWLEKVYLKRM-SITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIAS-KCRQLRVLDLIET--E 229 (413)
Q Consensus 154 ~~~~~l~~l~~~~~~L~~L~L~~~-~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~-~~~~L~~L~L~~~--~ 229 (413)
...+..+...+|+|++|+|+++ .+.-. .+ ..++|+.|.|..| +++..++..+.. .+|+|+.|+|+.+ .
T Consensus 161 --~~~L~~ll~~~P~L~~L~L~g~~~l~l~---~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~ 232 (362)
T 2ra8_A 161 --QVDLSPVLDAMPLLNNLKIKGTNNLSIG---KK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVED 232 (362)
T ss_dssp --CCBCHHHHHTCTTCCEEEEECCBTCBCC---SC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGG
T ss_pred --ccCHHHHHhcCCCCcEEEEeCCCCceec---cc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccc
Confidence 0112345557899999999886 22211 11 2578999999988 888888877764 6999999998632 2
Q ss_pred -cccccchhhhccC--ccCCCcceEEeccccCCCCHHHHHHHHH--hCCCCcEEEccccc-ChHHHHHH---HhcCCCCc
Q 044749 230 -VTDDEVDWISLFP--EGETCLESLIFDCVDCAINFEALEKLVA--RSPFLRKLRLNRHV-SIRQLYRL---MVRAPQLT 300 (413)
Q Consensus 230 -i~~~~~~~l~~l~--~~~~~L~~L~L~~~~~~~~~~~l~~l~~--~~~~L~~L~l~~~~-~~~~l~~l---l~~~p~L~ 300 (413)
..+.++..+..+. ..+++|+.|+|..|. +.+.+...+.. .+|+|++|+++.+. ...+...+ +..+++|+
T Consensus 233 ~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~--i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~ 310 (362)
T 2ra8_A 233 YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE--EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310 (362)
T ss_dssp GTCCSCGGGTGGGSCTTTCTTCCEEEEESCT--THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCS
T ss_pred cccchhHHHHHHHHhcCCCCCcCEEeCCCCC--CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcce
Confidence 2333332233332 247899999999885 55555555553 36899999998763 22233333 35689999
Q ss_pred eecccCc
Q 044749 301 HLGTGKY 307 (413)
Q Consensus 301 ~L~l~~~ 307 (413)
+|+++.+
T Consensus 311 ~L~L~~n 317 (362)
T 2ra8_A 311 FINMKYN 317 (362)
T ss_dssp EEECCSB
T ss_pred EEECCCC
Confidence 9999743
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.65 E-value=6.2e-09 Score=92.38 Aligned_cols=83 Identities=17% Similarity=0.102 Sum_probs=39.6
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGET 246 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~ 246 (413)
++++.|+|+++.++......+ ..+++|++|+|+++ .+.... ......+++|++|+|++|.++.-....+. .++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~ 107 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATF-RGLTKLTWLNLDYN-QLQTLS-AGVFDDLTELGTLGLANNQLASLPLGVFD----HLT 107 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTT----TCT
T ss_pred CCCCEEEccCCCcCccCHhHh-cCcccCCEEECCCC-cCCccC-HhHhccCCcCCEEECCCCcccccChhHhc----ccC
Confidence 466677776665443211111 12355666666665 333211 11123456666666666665543322222 233
Q ss_pred CcceEEeccc
Q 044749 247 CLESLIFDCV 256 (413)
Q Consensus 247 ~L~~L~L~~~ 256 (413)
+|+.|+|+++
T Consensus 108 ~L~~L~L~~N 117 (251)
T 3m19_A 108 QLDKLYLGGN 117 (251)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEEcCCC
Confidence 6666666555
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.64 E-value=6e-08 Score=96.92 Aligned_cols=170 Identities=18% Similarity=0.150 Sum_probs=120.5
Q ss_pred CCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHH
Q 044749 191 FSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVA 270 (413)
Q Consensus 191 ~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~ 270 (413)
+++|+.|.+++| .+... .. ...+++|+.|+|++|.+.+... + ..+++|+.|+|+++. +.. +.. ..
T Consensus 42 L~~L~~L~l~~n-~i~~l--~~-l~~l~~L~~L~Ls~N~l~~~~~--l----~~l~~L~~L~Ls~N~--l~~--l~~-l~ 106 (605)
T 1m9s_A 42 LNSIDQIIANNS-DIKSV--QG-IQYLPNVTKLFLNGNKLTDIKP--L----TNLKNLGWLFLDENK--IKD--LSS-LK 106 (605)
T ss_dssp HTTCCCCBCTTC-CCCCC--TT-GGGCTTCCEEECTTSCCCCCGG--G----GGCTTCCEEECCSSC--CCC--CTT-ST
T ss_pred CCCCCEEECcCC-CCCCC--hH-HccCCCCCEEEeeCCCCCCChh--h----ccCCCCCEEECcCCC--CCC--Chh-hc
Confidence 488999999988 55432 12 4679999999999999876442 3 356699999999985 221 111 23
Q ss_pred hCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc-CCcccChhhHhh
Q 044749 271 RSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS-GFREITPDYLSA 349 (413)
Q Consensus 271 ~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~-~~~~i~~~~l~~ 349 (413)
.+++|+.|+++++. +..+ ..+..+++|+.|+++..... .. ..+..+++|+.|. ..+.+++.. .
T Consensus 107 ~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~-------~l-----~~l~~l~~L~~L~Ls~N~l~~~~--~ 170 (605)
T 1m9s_A 107 DLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKIT-------DI-----TVLSRLTKLDTLSLEDNQISDIV--P 170 (605)
T ss_dssp TCTTCCEEECTTSC-CCCC-GGGGGCTTCSEEECCSSCCC-------CC-----GGGGSCTTCSEEECCSSCCCCCG--G
T ss_pred cCCCCCEEEecCCC-CCCC-ccccCCCccCEEECCCCccC-------Cc-----hhhcccCCCCEEECcCCcCCCch--h
Confidence 57999999999873 2222 23667999999999853322 11 3456788999988 433555432 2
Q ss_pred HhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCC
Q 044749 350 IYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKD 395 (413)
Q Consensus 350 l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d 395 (413)
...+++|++|+|++|.+++- . -+..+++|+.|+|.+|....+
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~l--~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISDL--R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCBC--G-GGTTCTTCSEEECCSEEEECC
T ss_pred -hccCCCCCEEECcCCCCCCC--h-HHccCCCCCEEEccCCcCcCC
Confidence 46789999999999998763 2 357899999999999876544
No 105
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.64 E-value=1.4e-08 Score=66.35 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=34.7
Q ss_pred cccCCCCcchHHHHHHHHHhhcCCcchhhHHHHHhHHHHHhhcCC
Q 044749 62 EYQSQYPDQVLEIVLENVLQFLTSRRDRNAASLVCKSWWRAEALT 106 (413)
Q Consensus 62 d~~~~LP~e~~~~il~~Ifs~L~~~~d~~~~~~vcr~W~~~~~~~ 106 (413)
..+..||+| ++.+||+|| +.+|+.+++.|||+|+.+....
T Consensus 7 ~~~~~LP~e----il~~I~~~L-~~~dl~~~~~Vck~w~~~~~~~ 46 (53)
T 1fs1_A 7 VSWDSLPDE----LLLGIFSCL-CLPELLKVSGVCKRWYRLASDE 46 (53)
T ss_dssp --CCSSCHH----HHHHHHTTS-CGGGHHHHHTTCHHHHHHHTCG
T ss_pred CCHHHCCHH----HHHHHHHcC-CHHHHHHHHHHHHHHHHHhCCh
Confidence 456789999 999999999 5999999999999999987643
No 106
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.61 E-value=6.6e-09 Score=94.35 Aligned_cols=175 Identities=14% Similarity=0.093 Sum_probs=95.2
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGET 246 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~ 246 (413)
++++.|+|+++.++......+ ..+++|+.|.|+++ .++.... ...+++|++|++++|.+.. +......++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~ 100 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRA-ELTKLQV---DGTLPVLGTLDLSHNQLQS-----LPLLGQTLP 100 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGG-TTCTTCCEEECTTS-CCCEEEC---CSCCTTCCEEECCSSCCSS-----CCCCTTTCT
T ss_pred CCCCEEEcCCCcCCccCHHHh-hcCCCCCEEECCCC-ccCcccC---CCCCCcCCEEECCCCcCCc-----CchhhccCC
Confidence 567777777775543211112 23467888888776 5543211 1457778888888777653 212223455
Q ss_pred CcceEEeccccC-CCCHHHHHHHHHhCCCCcEEEcccccChHHH-HHHHhcCCCCceecccCcCCCcccccCCCChhhHH
Q 044749 247 CLESLIFDCVDC-AINFEALEKLVARSPFLRKLRLNRHVSIRQL-YRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYI 324 (413)
Q Consensus 247 ~L~~L~L~~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l-~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~ 324 (413)
+|+.|+++++.- .+... ....+++|+.|+++++. +..+ ...+..+++|+.|+++...... .. .
T Consensus 101 ~L~~L~l~~N~l~~l~~~----~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------l~---~ 165 (290)
T 1p9a_G 101 ALTVLDVSFNRLTSLPLG----ALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTE-------LP---A 165 (290)
T ss_dssp TCCEEECCSSCCCCCCSS----TTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSC-------CC---T
T ss_pred CCCEEECCCCcCcccCHH----HHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCc-------cC---H
Confidence 788888877631 11111 12346778888887752 1111 2234567778888876422111 00 0
Q ss_pred HHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCC
Q 044749 325 AAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATIT 368 (413)
Q Consensus 325 ~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it 368 (413)
..+..+++|+.|. ..+.++ .++.-.....+|+.|+|++|.+.
T Consensus 166 ~~~~~l~~L~~L~L~~N~l~--~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 166 GLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCSCCBC
T ss_pred HHhcCcCCCCEEECCCCcCC--ccChhhcccccCCeEEeCCCCcc
Confidence 1234466777776 333343 12222234578999999998843
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.60 E-value=4.8e-08 Score=87.27 Aligned_cols=55 Identities=18% Similarity=0.146 Sum_probs=26.8
Q ss_pred CCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccc
Q 044749 192 SGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCV 256 (413)
Q Consensus 192 ~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~ 256 (413)
++|+.|++++| .++... ....+++|++|+|++|.+++-.. + ..+++|+.|+++++
T Consensus 41 ~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~L~~N~i~~~~~--l----~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 41 SGVQNFNGDNS-NIQSLA---GMQFFTNLKELHLSHNQISDLSP--L----KDLTKLEELSVNRN 95 (263)
T ss_dssp TTCSEEECTTS-CCCCCT---TGGGCTTCCEEECCSSCCCCCGG--G----TTCSSCCEEECCSS
T ss_pred CcCcEEECcCC-Ccccch---HHhhCCCCCEEECCCCccCCChh--h----ccCCCCCEEECCCC
Confidence 55555555555 333211 12345566666666655554321 1 13345666666555
No 108
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.58 E-value=6.4e-09 Score=100.62 Aligned_cols=75 Identities=15% Similarity=0.130 Sum_probs=38.0
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+++|+.|+++++.++. +....++|++|++++| .+.. +.. ...+++|++|++++|.+.. ++..
T Consensus 193 ~l~~L~~L~l~~N~l~~-----l~~~~~~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~l~~N~l~~--------l~~~ 255 (454)
T 1jl5_A 193 NLPFLTAIYADNNSLKK-----LPDLPLSLESIVAGNN-ILEE--LPE-LQNLPFLTTIYADNNLLKT--------LPDL 255 (454)
T ss_dssp TCTTCCEEECCSSCCSS-----CCCCCTTCCEEECCSS-CCSS--CCC-CTTCTTCCEEECCSSCCSS--------CCSC
T ss_pred CCCCCCEEECCCCcCCc-----CCCCcCcccEEECcCC-cCCc--ccc-cCCCCCCCEEECCCCcCCc--------cccc
Confidence 45666666666664442 1112235666666666 4431 111 2356667777776666443 1112
Q ss_pred CCCcceEEeccc
Q 044749 245 ETCLESLIFDCV 256 (413)
Q Consensus 245 ~~~L~~L~L~~~ 256 (413)
.++|+.|+++++
T Consensus 256 ~~~L~~L~l~~N 267 (454)
T 1jl5_A 256 PPSLEALNVRDN 267 (454)
T ss_dssp CTTCCEEECCSS
T ss_pred ccccCEEECCCC
Confidence 245666666555
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.57 E-value=4.9e-09 Score=86.87 Aligned_cols=14 Identities=36% Similarity=0.285 Sum_probs=7.1
Q ss_pred HHhcCCCCceeccc
Q 044749 292 LMVRAPQLTHLGTG 305 (413)
Q Consensus 292 ll~~~p~L~~L~l~ 305 (413)
.+..+++|++|++.
T Consensus 142 ~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 142 VFKLLPQLTYLDGY 155 (168)
T ss_dssp HHTTCSSCCEETTE
T ss_pred HHHhCccCcEecCC
Confidence 34445555555554
No 110
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.56 E-value=1.1e-09 Score=96.60 Aligned_cols=199 Identities=10% Similarity=0.016 Sum_probs=96.1
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccc-cccccccchhhhccCccC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIE-TEVTDDEVDWISLFPEGE 245 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~-~~i~~~~~~~l~~l~~~~ 245 (413)
++|+.|+++++.++.-.... ...+++|+.|+++++..++...- .....+++|++|++++ |.++.-....+. .+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~-~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~l~~i~~~~f~----~l 104 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHA-FSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYIDPDALK----EL 104 (239)
T ss_dssp TTCCEEEEESCCCSEECTTT-TTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETTCCEECTTSEE----CC
T ss_pred CcccEEEEeCCcceEECHHH-ccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCCeeEcCHHHhC----CC
Confidence 36777777776544211111 12346677777777621332110 0124577777777776 665543211122 34
Q ss_pred CCcceEEeccccCCCCHHHHHHHHHhCCCCc---EEEcccccChHHH-HHHHhcCCCCc-eecccCcCCCcccccCCCCh
Q 044749 246 TCLESLIFDCVDCAINFEALEKLVARSPFLR---KLRLNRHVSIRQL-YRLMVRAPQLT-HLGTGKYGPSEVAQRQGDTE 320 (413)
Q Consensus 246 ~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~---~L~l~~~~~~~~l-~~ll~~~p~L~-~L~l~~~~~~~~~~~~g~~~ 320 (413)
++|+.|+++++. +.. +.. ...+++|+ .|+++++..+..+ ...+..+++|+ +|+++....... .
T Consensus 105 ~~L~~L~l~~n~--l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i-------~ 172 (239)
T 2xwt_C 105 PLLKFLGIFNTG--LKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV-------Q 172 (239)
T ss_dssp TTCCEEEEEEEC--CCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-------C
T ss_pred CCCCEEeCCCCC--Ccc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-------C
Confidence 577777777763 110 111 12356666 7777765222222 12344566777 777653221100 0
Q ss_pred hhHHHHHhhCCCccccc-CCc-ccChhhHhhHhhcC-CCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccc
Q 044749 321 PDYIAAFAACKSLVCLS-GFR-EITPDYLSAIYPVC-ANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYV 392 (413)
Q Consensus 321 ~~~~~~~~~~~~L~~L~-~~~-~i~~~~l~~l~~~~-~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~ 392 (413)
. ..+.. ++|+.|. ... .++.... .....+ ++|+.|+|++|.++.-. . ..+++|+.|++.+++.
T Consensus 173 ~---~~~~~-~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~l~~l~--~--~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 173 G---YAFNG-TKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTSVTALP--S--KGLEHLKELIARNTWT 238 (239)
T ss_dssp T---TTTTT-CEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCCCCCCC--C--TTCTTCSEEECTTC--
T ss_pred H---hhcCC-CCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCccccCC--h--hHhccCceeeccCccC
Confidence 0 01111 3555555 221 1332111 122345 77888888877754321 1 1567788887777653
No 111
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.48 E-value=1.6e-08 Score=89.66 Aligned_cols=102 Identities=19% Similarity=0.142 Sum_probs=50.5
Q ss_pred CCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCC-CCHHHHHHHHHh
Q 044749 193 GFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCA-INFEALEKLVAR 271 (413)
Q Consensus 193 ~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~-~~~~~l~~l~~~ 271 (413)
+|+.|+|+++ .++...- .....+++|++|+|++|.+.+.....+. .+++|+.|+|+++.-. +... ....
T Consensus 36 ~l~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~----~~~~ 105 (251)
T 3m19_A 36 DTEKLDLQST-GLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFD----DLTELGTLGLANNQLASLPLG----VFDH 105 (251)
T ss_dssp TCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTT----TCTTCCEEECTTSCCCCCCTT----TTTT
T ss_pred CCCEEEccCC-CcCccCH-hHhcCcccCCEEECCCCcCCccCHhHhc----cCCcCCEEECCCCcccccChh----Hhcc
Confidence 5677777666 4432211 1123466777777777666554322232 2346777777666311 1110 1123
Q ss_pred CCCCcEEEcccccChHHH-HHHHhcCCCCceeccc
Q 044749 272 SPFLRKLRLNRHVSIRQL-YRLMVRAPQLTHLGTG 305 (413)
Q Consensus 272 ~~~L~~L~l~~~~~~~~l-~~ll~~~p~L~~L~l~ 305 (413)
+++|+.|+++++. +..+ ...+..+++|++|+++
T Consensus 106 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 106 LTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred cCCCCEEEcCCCc-CCCcChhHhccCCcccEEECc
Confidence 5667777776642 1111 1223455666666665
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.44 E-value=1e-07 Score=85.05 Aligned_cols=120 Identities=14% Similarity=0.168 Sum_probs=68.7
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+++|+.|+++++.+++-. . ...+++|+.|+|++| .++... . ...+++|++|++++|.+++-. .+..
T Consensus 39 ~l~~L~~L~l~~n~i~~l~--~-l~~l~~L~~L~L~~N-~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~-----~~~~- 105 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA--G-MQFFTNLKELHLSHN-QISDLS--P-LKDLTKLEELSVNRNRLKNLN-----GIPS- 105 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT--T-GGGCTTCCEEECCSS-CCCCCG--G-GTTCSSCCEEECCSSCCSCCT-----TCCC-
T ss_pred hcCcCcEEECcCCCcccch--H-HhhCCCCCEEECCCC-ccCCCh--h-hccCCCCCEEECCCCccCCcC-----cccc-
Confidence 4477777777777554321 1 234577888888877 554322 1 456888888888888876522 1221
Q ss_pred CCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceeccc
Q 044749 245 ETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTG 305 (413)
Q Consensus 245 ~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~ 305 (413)
++|+.|+++++. ++. +.. ...+++|+.|+++++. +..+. .+..+++|+.|+++
T Consensus 106 -~~L~~L~L~~N~--l~~--~~~-l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 106 -ACLSRLFLDNNE--LRD--TDS-LIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLH 158 (263)
T ss_dssp -SSCCEEECCSSC--CSB--SGG-GTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECT
T ss_pred -CcccEEEccCCc--cCC--Chh-hcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECC
Confidence 578888888774 211 111 2246777777776652 11111 23445555555554
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.42 E-value=5.7e-08 Score=96.14 Aligned_cols=190 Identities=13% Similarity=0.084 Sum_probs=109.7
Q ss_pred CCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCC
Q 044749 127 FRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFG 206 (413)
Q Consensus 127 ~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~ 206 (413)
..+++.|+++++. +. -+|.. .+++|+.|+|+++.++. +. ..+++|+.|+|++| .++
T Consensus 58 ~~~L~~L~Ls~n~-L~---~lp~~--------------l~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N-~l~ 113 (571)
T 3cvr_A 58 INQFSELQLNRLN-LS---SLPDN--------------LPPQITVLEITQNALIS--LP---ELPASLEYLDACDN-RLS 113 (571)
T ss_dssp HTTCSEEECCSSC-CS---CCCSC--------------CCTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSS-CCS
T ss_pred cCCccEEEeCCCC-CC---ccCHh--------------HcCCCCEEECcCCCCcc--cc---cccCCCCEEEccCC-CCC
Confidence 3488899888653 21 14332 13679999999987662 21 34678999999988 555
Q ss_pred hHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccCh
Q 044749 207 TCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSI 286 (413)
Q Consensus 207 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 286 (413)
. +.. -..+|++|+|++|.++.-. ..+++|+.|+++++. ++. + ...+++|+.|+++++. +
T Consensus 114 ~--ip~---l~~~L~~L~Ls~N~l~~lp--------~~l~~L~~L~Ls~N~--l~~--l---p~~l~~L~~L~Ls~N~-L 172 (571)
T 3cvr_A 114 T--LPE---LPASLKHLDVDNNQLTMLP--------ELPALLEYINADNNQ--LTM--L---PELPTSLEVLSVRNNQ-L 172 (571)
T ss_dssp C--CCC---CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSC--CSC--C---CCCCTTCCEEECCSSC-C
T ss_pred C--cch---hhcCCCEEECCCCcCCCCC--------CcCccccEEeCCCCc--cCc--C---CCcCCCcCEEECCCCC-C
Confidence 3 222 1238999999998876522 145689999998885 211 1 1146889999998863 2
Q ss_pred HHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHH-HHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeec
Q 044749 287 RQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYI-AAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSY 364 (413)
Q Consensus 287 ~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~-~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~ 364 (413)
..+.. +. ++|+.|+++.......+ . +. ......+.|+.|. ..+.++. ++.-...+++|+.|+|++
T Consensus 173 ~~lp~-l~--~~L~~L~Ls~N~L~~lp-------~-~~~~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 173 TFLPE-LP--ESLEALDVSTNLLESLP-------A-VPVRNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILED 239 (571)
T ss_dssp SCCCC-CC--TTCCEEECCSSCCSSCC-------C-CC--------CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCS
T ss_pred CCcch-hh--CCCCEEECcCCCCCchh-------h-HHHhhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEeeC
Confidence 22222 22 78999988743322111 0 10 1111222336666 3334442 222223367788888887
Q ss_pred ccCChhhHHH
Q 044749 365 ATITADQLKP 374 (413)
Q Consensus 365 ~~it~~~l~~ 374 (413)
|.++......
T Consensus 240 N~l~~~~p~~ 249 (571)
T 3cvr_A 240 NPLSSRIRES 249 (571)
T ss_dssp SSCCHHHHHH
T ss_pred CcCCCcCHHH
Confidence 7776654333
No 114
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.42 E-value=1.1e-07 Score=79.40 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=24.3
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccc
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVT 231 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~ 231 (413)
.+|++|+++++.++. +..+....++|+.|++++| .++.. .....+++|++|++++|.++
T Consensus 19 ~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp TSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSSCCC
T ss_pred CCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCCccc
Confidence 444455554443331 1122222234555555544 33321 11223455555555555444
No 115
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.42 E-value=3.9e-08 Score=95.07 Aligned_cols=178 Identities=14% Similarity=0.140 Sum_probs=108.0
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGET 246 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~ 246 (413)
++|+.|+++++.++. +....++|++|++++| .++. +.. ...+++|++|++++|.++. ++...+
T Consensus 111 ~~L~~L~l~~n~l~~-----l~~~~~~L~~L~L~~n-~l~~--lp~-~~~l~~L~~L~l~~N~l~~--------lp~~~~ 173 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-----LSDLPPLLEYLGVSNN-QLEK--LPE-LQNSSFLKIIDVDNNSLKK--------LPDLPP 173 (454)
T ss_dssp TTCCEEECCSSCCSC-----CCSCCTTCCEEECCSS-CCSS--CCC-CTTCTTCCEEECCSSCCSC--------CCCCCT
T ss_pred CCCcEEECCCCccCc-----ccCCCCCCCEEECcCC-CCCC--Ccc-cCCCCCCCEEECCCCcCcc--------cCCCcc
Confidence 678888888876553 1112257888888887 5543 222 4568888888888887653 122234
Q ss_pred CcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHH
Q 044749 247 CLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAA 326 (413)
Q Consensus 247 ~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~ 326 (413)
+|++|+++++. +.. +.. ...+++|+.|+++++. +.++. ...++|++|+++...... .. .
T Consensus 174 ~L~~L~L~~n~--l~~--l~~-~~~l~~L~~L~l~~N~-l~~l~---~~~~~L~~L~l~~n~l~~-------lp-----~ 232 (454)
T 1jl5_A 174 SLEFIAAGNNQ--LEE--LPE-LQNLPFLTAIYADNNS-LKKLP---DLPLSLESIVAGNNILEE-------LP-----E 232 (454)
T ss_dssp TCCEEECCSSC--CSS--CCC-CTTCTTCCEEECCSSC-CSSCC---CCCTTCCEEECCSSCCSS-------CC-----C
T ss_pred cccEEECcCCc--CCc--Ccc-ccCCCCCCEEECCCCc-CCcCC---CCcCcccEEECcCCcCCc-------cc-----c
Confidence 88888888874 111 111 2357888889888763 11111 123588888887432211 11 1
Q ss_pred HhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccc
Q 044749 327 FAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYV 392 (413)
Q Consensus 327 ~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~ 392 (413)
+..+++|+.|. +...++. +....++|+.|++++|.++. +. ...++|+.|++++|..
T Consensus 233 ~~~l~~L~~L~l~~N~l~~-----l~~~~~~L~~L~l~~N~l~~--l~---~~~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKT-----LPDLPPSLEALNVRDNYLTD--LP---ELPQSLTFLDVSENIF 289 (454)
T ss_dssp CTTCTTCCEEECCSSCCSS-----CCSCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCC
T ss_pred cCCCCCCCEEECCCCcCCc-----ccccccccCEEECCCCcccc--cC---cccCcCCEEECcCCcc
Confidence 34677788877 3333332 11234789999999888654 11 2347899999988753
No 116
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.39 E-value=4e-06 Score=70.35 Aligned_cols=123 Identities=13% Similarity=0.194 Sum_probs=96.7
Q ss_pred HHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHH---hCCcCcEEEccccccccccchhhhccCccCCCcceEEecccc
Q 044749 181 DDDLALLAESFSGFKELTLVCCEGFGTCGLAFIAS---KCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVD 257 (413)
Q Consensus 181 ~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~---~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~ 257 (413)
++.+..+...-+.|+.|+|+++..+++.+...++. .-..|+.|+|++|.|+|.+...+.......+.|++|+|+.+.
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 44566666655789999999865889888666554 456899999999999999988887777778899999999986
Q ss_pred CCCCHHHHHHHHHhC---CCCcEEEccccc--ChH-----HHHHHHhcCCCCceeccc
Q 044749 258 CAINFEALEKLVARS---PFLRKLRLNRHV--SIR-----QLYRLMVRAPQLTHLGTG 305 (413)
Q Consensus 258 ~~~~~~~l~~l~~~~---~~L~~L~l~~~~--~~~-----~l~~ll~~~p~L~~L~l~ 305 (413)
+++++...+...+ ..|++|+++++. .++ .+...+..-+.|++|++.
T Consensus 110 --Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 110 --LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp --CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred --CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 8999988877655 679999997642 222 356677788899999886
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.37 E-value=3.4e-08 Score=84.81 Aligned_cols=157 Identities=13% Similarity=0.096 Sum_probs=86.8
Q ss_pred CCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccC-CCCHHHHHHHHH
Q 044749 192 SGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDC-AINFEALEKLVA 270 (413)
Q Consensus 192 ~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~~l~~l~~ 270 (413)
++|++|+++++ .++... ......+++|++|++++|.+..-....+. .+++|++|+++++.- .+... ...
T Consensus 28 ~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~----~~~ 97 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSLP-NGVFDELTSLTQLYLGGNKLQSLPNGVFN----KLTSLTYLNLSTNQLQSLPNG----VFD 97 (208)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCCCCCTT----TTT
T ss_pred CCCcEEEcCCC-ccCcCC-hhhhcccccCcEEECCCCccCccChhhcC----CCCCcCEEECCCCcCCccCHh----Hhc
Confidence 56899999887 554321 11235688899999988887643322222 445888888887741 11111 123
Q ss_pred hCCCCcEEEcccccChHHH-HHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCcccccCCcccChhhHhh
Q 044749 271 RSPFLRKLRLNRHVSIRQL-YRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLSGFREITPDYLSA 349 (413)
Q Consensus 271 ~~~~L~~L~l~~~~~~~~l-~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~~~~~i~~~~l~~ 349 (413)
.+++|+.|+++++. +..+ ...+..+++|++|+++.. .++... ..
T Consensus 98 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N---------------------------------~l~~~~-~~ 142 (208)
T 2o6s_A 98 KLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN---------------------------------QLKSVP-DG 142 (208)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS---------------------------------CCSCCC-TT
T ss_pred CccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC---------------------------------ccceeC-HH
Confidence 46777777777652 1111 112344555555555421 121111 11
Q ss_pred HhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCCCchhhh
Q 044749 350 IYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKDFRPWLQ 401 (413)
Q Consensus 350 l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~~~~~ 401 (413)
....+++|++|+|++|.++ ..|++|+.|+++++......+.+..
T Consensus 143 ~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp TTTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred HhccCCCccEEEecCCCee--------cCCCCHHHHHHHHHhCCceeeccCc
Confidence 1245678888888888753 3566777777766654444444433
No 118
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.31 E-value=2e-07 Score=93.79 Aligned_cols=129 Identities=16% Similarity=0.096 Sum_probs=70.5
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGET 246 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~ 246 (413)
+++++|+|+++.++.-.-.. ...+++|++|+|++| .++... .....++++|++|+|++|.++.-...++. +++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~-f~~l~~L~~L~Ls~N-~i~~i~-~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~----~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFS----GLS 124 (635)
T ss_dssp TTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTCCCCEECGGGGT----TCT
T ss_pred cCCCEEEeeCCCCCCCCHHH-HhCCCCCCEEECCCC-cCCCcC-hhHhcCCCCCCEEEccCCcCCCCCHHHhc----CCC
Confidence 36777777777554211011 123467778887777 444211 01134577788888887776653322233 344
Q ss_pred CcceEEeccccC-CCCHHHHHHHHHhCCCCcEEEcccccC-hHHHHHHHhcCCCCceecccC
Q 044749 247 CLESLIFDCVDC-AINFEALEKLVARSPFLRKLRLNRHVS-IRQLYRLMVRAPQLTHLGTGK 306 (413)
Q Consensus 247 ~L~~L~L~~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~-~~~l~~ll~~~p~L~~L~l~~ 306 (413)
+|++|+++++.- .+... ....+++|+.|+++++.- ...+...+..+++|++|+++.
T Consensus 125 ~L~~L~Ls~N~l~~l~~~----~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp TCCEEECTTSCCCCSTTC----CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCCEEECCCCcCCCCChh----hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 788888777631 11110 113467788888776521 112233455677888888764
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.25 E-value=3.2e-07 Score=78.08 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=24.0
Q ss_pred hcCCCCCEEEeecccCChh---------hHHHHHhcCCCCCEEE
Q 044749 352 PVCANLTSLNFSYATITAD---------QLKPVICNCHKLQIFG 386 (413)
Q Consensus 352 ~~~~~L~~L~Ls~~~it~~---------~l~~l~~~~~~L~~L~ 386 (413)
..+++|++|++++|.++.. ....++..+++|+.|+
T Consensus 137 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp TTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred hcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 4567888888888775432 2234467888999886
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.23 E-value=1e-07 Score=88.13 Aligned_cols=37 Identities=8% Similarity=0.103 Sum_probs=20.5
Q ss_pred CCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEcccccc
Q 044749 191 FSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEV 230 (413)
Q Consensus 191 ~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i 230 (413)
|++|+.|.|.. .+...+- ....+|++|++|++..+.+
T Consensus 100 ~~~L~~l~L~~--~i~~I~~-~aF~~~~~L~~l~l~~n~i 136 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIED-AAFKGCDNLKICQIRKKTA 136 (329)
T ss_dssp CTTCCC-CBCT--TCCEECT-TTTTTCTTCCEEEBCCSSC
T ss_pred cCCCcEEECCc--cccchhH-HHhhcCcccceEEcCCCCc
Confidence 56777777764 2221111 1134578888888877654
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.23 E-value=3e-07 Score=78.21 Aligned_cols=105 Identities=14% Similarity=0.105 Sum_probs=58.8
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.+++|+.|+++++.++. +..+. .+++|+.|++++| .++. +......+++|++|++++|.+++- ..+..
T Consensus 46 ~l~~L~~L~ls~n~l~~--l~~~~-~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N~l~~l--~~~~~---- 113 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK--ISSLS-GMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYNQIASL--SGIEK---- 113 (198)
T ss_dssp HTTTCSEEECSEEEESC--CCCHH-HHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEEECCCH--HHHHH----
T ss_pred cCCCCCEEECCCCCCcc--ccccc-cCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCCcCCcC--Ccccc----
Confidence 56777777777765543 22222 2367777777766 4442 223344456777777777776542 12333
Q ss_pred CCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccc
Q 044749 245 ETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRH 283 (413)
Q Consensus 245 ~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 283 (413)
+++|+.|+++++. -.....+. ....+++|+.|+++++
T Consensus 114 l~~L~~L~l~~N~-i~~~~~~~-~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 114 LVNLRVLYMSNNK-ITNWGEID-KLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHSSEEEESEEE-CCCHHHHH-HHTTTTTCSEEEECSC
T ss_pred CCCCCEEECCCCc-CCchhHHH-HHhcCCCCCEEEecCC
Confidence 3377777777764 11222222 2234677777777765
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.22 E-value=5.3e-09 Score=103.84 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=22.9
Q ss_pred hcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeeccc
Q 044749 352 PVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQY 391 (413)
Q Consensus 352 ~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~ 391 (413)
..+++|+.|+|++|.++.......+..+++|+.|+|+++.
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 4556677777776665433212234566667777776654
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.21 E-value=1.2e-06 Score=72.89 Aligned_cols=40 Identities=15% Similarity=0.079 Sum_probs=25.9
Q ss_pred hcCCCCCEEEeecccCChhh--HHHHHhcCCCCCEEEeeccc
Q 044749 352 PVCANLTSLNFSYATITADQ--LKPVICNCHKLQIFGPSIQY 391 (413)
Q Consensus 352 ~~~~~L~~L~Ls~~~it~~~--l~~l~~~~~~L~~L~l~~c~ 391 (413)
..+++|++|++++|.++... -..++..+|+|+.|++.++.
T Consensus 110 ~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 110 ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 35677888888877754321 12245677888888877764
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.19 E-value=5.4e-07 Score=89.18 Aligned_cols=111 Identities=15% Similarity=0.190 Sum_probs=54.0
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGET 246 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~ 246 (413)
.+|+.|+++++.++. +.. ..+++|+.|+|+++ .++. +. ..+++|++|+|++|.|+.-. .+..
T Consensus 59 ~~L~~L~Ls~n~L~~--lp~--~l~~~L~~L~Ls~N-~l~~--ip---~~l~~L~~L~Ls~N~l~~ip-----~l~~--- 120 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS--LPD--NLPPQITVLEITQN-ALIS--LP---ELPASLEYLDACDNRLSTLP-----ELPA--- 120 (571)
T ss_dssp TTCSEEECCSSCCSC--CCS--CCCTTCSEEECCSS-CCSC--CC---CCCTTCCEEECCSSCCSCCC-----CCCT---
T ss_pred CCccEEEeCCCCCCc--cCH--hHcCCCCEEECcCC-CCcc--cc---cccCCCCEEEccCCCCCCcc-----hhhc---
Confidence 466666666665442 100 01245666666666 4442 11 33566666666666655411 1221
Q ss_pred CcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccC
Q 044749 247 CLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGK 306 (413)
Q Consensus 247 ~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~ 306 (413)
+|+.|+|+++. ++. +.. .+++|+.|+++++. +..+.. .+++|+.|+++.
T Consensus 121 ~L~~L~Ls~N~--l~~--lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 121 SLKHLDVDNNQ--LTM--LPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRN 169 (571)
T ss_dssp TCCEEECCSSC--CSC--CCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCS
T ss_pred CCCEEECCCCc--CCC--CCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCC
Confidence 66666666653 111 111 35666666666642 111111 345666666653
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.17 E-value=3e-07 Score=86.09 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=27.3
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccc
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVT 231 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~ 231 (413)
+.++.|+|+++.++.-....+...+++|+.|+|+++ .++...- .....+++|+.|+|++|.+.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N~l~ 101 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISS-EAFVPVPNLRYLDLSSNHLH 101 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSCCC
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccCh-hhccCCCCCCEEECCCCcCC
Confidence 345666666654432111111112345555555555 3332110 01233555555555555544
No 126
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.13 E-value=1.1e-06 Score=88.52 Aligned_cols=154 Identities=19% Similarity=0.137 Sum_probs=82.8
Q ss_pred CCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccC-CCCHHHHHHHHHh
Q 044749 193 GFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDC-AINFEALEKLVAR 271 (413)
Q Consensus 193 ~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~~l~~l~~~ 271 (413)
++++|+|+++ .++... .....++++|++|+|++|.|+.-....+. ++++|++|+|+++.- .+... ....
T Consensus 53 ~~~~LdLs~N-~i~~l~-~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~----~L~~L~~L~Ls~N~l~~l~~~----~f~~ 122 (635)
T 4g8a_A 53 STKNLDLSFN-PLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQ----SLSHLSTLILTGNPIQSLALG----AFSG 122 (635)
T ss_dssp TCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTT----TCTTCCEEECTTCCCCEECGG----GGTT
T ss_pred CCCEEEeeCC-CCCCCC-HHHHhCCCCCCEEECCCCcCCCcChhHhc----CCCCCCEEEccCCcCCCCCHH----HhcC
Confidence 6888888887 554321 11235688888888888876643322233 345888888887731 11111 1234
Q ss_pred CCCCcEEEcccccChHHHH-HHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCcccccCCcccChhhHhhH
Q 044749 272 SPFLRKLRLNRHVSIRQLY-RLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLSGFREITPDYLSAI 350 (413)
Q Consensus 272 ~~~L~~L~l~~~~~~~~l~-~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~~~~~i~~~~l~~l 350 (413)
+++|++|+++++. +..+. ..+..+++|++|+++ .+.++....+..
T Consensus 123 L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls---------------------------------~N~l~~~~~~~~ 168 (635)
T 4g8a_A 123 LSSLQKLVAVETN-LASLENFPIGHLKTLKELNVA---------------------------------HNLIQSFKLPEY 168 (635)
T ss_dssp CTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECC---------------------------------SSCCCCCCCCGG
T ss_pred CCCCCEEECCCCc-CCCCChhhhhcCcccCeeccc---------------------------------cCccccCCCchh
Confidence 6777777777652 11111 112344455555544 112322223334
Q ss_pred hhcCCCCCEEEeecccCCh---hhHHHHHhcCCCCCEEEeecc
Q 044749 351 YPVCANLTSLNFSYATITA---DQLKPVICNCHKLQIFGPSIQ 390 (413)
Q Consensus 351 ~~~~~~L~~L~Ls~~~it~---~~l~~l~~~~~~L~~L~l~~c 390 (413)
...+++|++|+|++|.++. ..+..+-.....+..+++...
T Consensus 169 ~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 169 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 4567889999999887543 344443322233445665543
No 127
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.12 E-value=1.7e-07 Score=82.30 Aligned_cols=180 Identities=11% Similarity=0.028 Sum_probs=110.7
Q ss_pred CCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccc-cccccchhhhccCccCCCcceEEecc-cc-CCCCHHHHHHH
Q 044749 192 SGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETE-VTDDEVDWISLFPEGETCLESLIFDC-VD-CAINFEALEKL 268 (413)
Q Consensus 192 ~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~l~~~~~~L~~L~L~~-~~-~~~~~~~l~~l 268 (413)
++|+.|+++++ .++...- .....+++|++|++++|. ++.-....+. .+++|++|++++ +. ..+... .
T Consensus 31 ~~l~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~~f~----~l~~L~~L~l~~~n~l~~i~~~----~ 100 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESHSFY----NLSKVTHIEIRNTRNLTYIDPD----A 100 (239)
T ss_dssp TTCCEEEEESC-CCSEECT-TTTTTCTTCCEEEEECCSSCCEECTTTEE----SCTTCCEEEEEEETTCCEECTT----S
T ss_pred CcccEEEEeCC-cceEECH-HHccCCCCCcEEeCCCCCCcceeCHhHcC----CCcCCcEEECCCCCCeeEcCHH----H
Confidence 47999999998 6653221 123569999999999996 7653322233 456999999997 42 111111 1
Q ss_pred HHhCCCCcEEEcccccChHHHHHHHhcCCCCc---eecccCc-CCCcccccCCCChhhHHHHHhhCCCcc-ccc-CCccc
Q 044749 269 VARSPFLRKLRLNRHVSIRQLYRLMVRAPQLT---HLGTGKY-GPSEVAQRQGDTEPDYIAAFAACKSLV-CLS-GFREI 342 (413)
Q Consensus 269 ~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~---~L~l~~~-~~~~~~~~~g~~~~~~~~~~~~~~~L~-~L~-~~~~i 342 (413)
...+++|+.|+++++. +..+.. +..+++|+ .|+++.. ..... ....+..+++|+ .|. +...+
T Consensus 101 f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i----------~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSI----------PVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEE----------CTTTTTTTBSSEEEEECCSCCC
T ss_pred hCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhc----------CcccccchhcceeEEEcCCCCC
Confidence 2357999999999863 222222 55677777 8988743 22110 011245678888 887 33344
Q ss_pred ChhhHhhHhhcCCCCCEEEeeccc-CChhhHHHHHhcC-CCCCEEEeecccccCCCc
Q 044749 343 TPDYLSAIYPVCANLTSLNFSYAT-ITADQLKPVICNC-HKLQIFGPSIQYVMKDFR 397 (413)
Q Consensus 343 ~~~~l~~l~~~~~~L~~L~Ls~~~-it~~~l~~l~~~~-~~L~~L~l~~c~~i~d~~ 397 (413)
+.-....+ .. ++|++|+|++|. ++.-. ...+..+ ++|+.|+++++.. +..+
T Consensus 169 ~~i~~~~~-~~-~~L~~L~L~~n~~l~~i~-~~~~~~l~~~L~~L~l~~N~l-~~l~ 221 (239)
T 2xwt_C 169 TSVQGYAF-NG-TKLDAVYLNKNKYLTVID-KDAFGGVYSGPSLLDVSQTSV-TALP 221 (239)
T ss_dssp CEECTTTT-TT-CEEEEEECTTCTTCCEEC-TTTTTTCSBCCSEEECTTCCC-CCCC
T ss_pred cccCHhhc-CC-CCCCEEEcCCCCCcccCC-HHHhhccccCCcEEECCCCcc-ccCC
Confidence 42111112 22 789999999995 76432 1234567 8999999998653 4433
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.11 E-value=1.3e-06 Score=76.20 Aligned_cols=103 Identities=18% Similarity=0.094 Sum_probs=58.3
Q ss_pred CCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccC-CCCHHHHHHHHH
Q 044749 192 SGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDC-AINFEALEKLVA 270 (413)
Q Consensus 192 ~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~~l~~l~~ 270 (413)
++|+.|+|+++ .+.... ......+++|++|+|++|.+..-....+. .+++|+.|+|+++.- .+... ...
T Consensus 40 ~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~N~l~~i~~~~~~----~l~~L~~L~Ls~N~l~~l~~~----~~~ 109 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLE-PGVFDSLINLKELYLGSNQLGALPVGVFD----SLTQLTVLDLGTNQLTVLPSA----VFD 109 (229)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCCCCCTT----TTT
T ss_pred CCCCEEEcCCC-ccCccC-HHHhhCccCCcEEECCCCCCCCcChhhcc----cCCCcCEEECCCCcCCccChh----HhC
Confidence 57999999887 554321 12234678899999988887543322222 345888888887741 11110 112
Q ss_pred hCCCCcEEEcccccChHHHHHHHhcCCCCceeccc
Q 044749 271 RSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTG 305 (413)
Q Consensus 271 ~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~ 305 (413)
.+++|+.|+++++. +..+...+..+++|++|+++
T Consensus 110 ~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 110 RLVHLKELFMCCNK-LTELPRGIERLTHLTHLALD 143 (229)
T ss_dssp TCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECC
T ss_pred cchhhCeEeccCCc-ccccCcccccCCCCCEEECC
Confidence 46777777777642 12222223445555555554
No 129
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.04 E-value=4.2e-07 Score=79.31 Aligned_cols=128 Identities=23% Similarity=0.226 Sum_probs=68.7
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGET 246 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~ 246 (413)
++|+.|+|+++.++...... ...+++|+.|+|+++ .++... ......+++|+.|+|++|.++.-....+. .++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~N-~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~----~l~ 112 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGV-FDSLINLKELYLGSN-QLGALP-VGVFDSLTQLTVLDLGTNQLTVLPSAVFD----RLV 112 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCT
T ss_pred CCCCEEEcCCCccCccCHHH-hhCccCCcEEECCCC-CCCCcC-hhhcccCCCcCEEECCCCcCCccChhHhC----cch
Confidence 66777777776554321111 123466777777776 443211 11234577777777777776643322222 344
Q ss_pred CcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHH-HHHHhcCCCCceecccC
Q 044749 247 CLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQL-YRLMVRAPQLTHLGTGK 306 (413)
Q Consensus 247 ~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l-~~ll~~~p~L~~L~l~~ 306 (413)
+|+.|+|+++. +. .+..-...+++|+.|+++++. +..+ ...+..+++|+.|++.+
T Consensus 113 ~L~~L~Ls~N~--l~--~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 113 HLKELFMCCNK--LT--ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp TCCEEECCSSC--CC--SCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTT
T ss_pred hhCeEeccCCc--cc--ccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeC
Confidence 77777777764 11 111111346777777777652 2222 13345567777777763
No 130
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.02 E-value=3.4e-07 Score=78.54 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=8.4
Q ss_pred hCCcCcEEEccccccc
Q 044749 216 KCRQLRVLDLIETEVT 231 (413)
Q Consensus 216 ~~~~L~~L~L~~~~i~ 231 (413)
.+++|++|++++|.++
T Consensus 74 ~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp TCTTCCEEECCSSCCC
T ss_pred CCCCcCEEECCCCcCC
Confidence 3455555555555544
No 131
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.96 E-value=3.8e-07 Score=79.04 Aligned_cols=128 Identities=9% Similarity=0.073 Sum_probs=61.2
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGET 246 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~ 246 (413)
+.++.|+|+++.++..........+++|+.|+|+++ .++... ......+++|++|+|++|.++......+. .++
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~l~ 105 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFK----GLE 105 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGGT----TCS
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEEC-HHHhCCCCCCCEEECCCCccCccCHhHhc----CCc
Confidence 345666666664432110011223466666666665 443211 11123466677777776666544322232 334
Q ss_pred CcceEEeccccC-CCCHHHHHHHHHhCCCCcEEEcccccChHHH-HHHHhcCCCCceeccc
Q 044749 247 CLESLIFDCVDC-AINFEALEKLVARSPFLRKLRLNRHVSIRQL-YRLMVRAPQLTHLGTG 305 (413)
Q Consensus 247 ~L~~L~L~~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l-~~ll~~~p~L~~L~l~ 305 (413)
+|+.|+|+++.- .+.... ...+++|+.|+++++. +..+ ...+..+++|+.|+++
T Consensus 106 ~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 106 SLKTLMLRSNRITCVGNDS----FIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp SCCEEECTTSCCCCBCTTS----STTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCeECHhH----cCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEec
Confidence 677777666531 111111 1235666777766642 1111 2334456666666665
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.96 E-value=1.8e-06 Score=74.74 Aligned_cols=121 Identities=16% Similarity=0.136 Sum_probs=67.9
Q ss_pred cEEeeeCCccCHHHHHHHHHh-CCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCc
Q 044749 170 EKVYLKRMSITDDDLALLAES-FSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCL 248 (413)
Q Consensus 170 ~~L~L~~~~l~~~~l~~l~~~-~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L 248 (413)
+.++++++.++. +... .+.+++|.|+++ .++..........+++|++|+|++|.|+.-....+. .+++|
T Consensus 14 ~~l~~s~n~l~~-----iP~~~~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~----~l~~L 83 (220)
T 2v70_A 14 TTVDCSNQKLNK-----IPEHIPQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE----GASGV 83 (220)
T ss_dssp TEEECCSSCCSS-----CCSCCCTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT----TCTTC
T ss_pred CEeEeCCCCccc-----CccCCCCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhC----CCCCC
Confidence 467777665442 1111 235889999887 555321111235688999999999887754422233 34588
Q ss_pred ceEEeccccC-CCCHHHHHHHHHhCCCCcEEEcccccChHHH-HHHHhcCCCCceeccc
Q 044749 249 ESLIFDCVDC-AINFEALEKLVARSPFLRKLRLNRHVSIRQL-YRLMVRAPQLTHLGTG 305 (413)
Q Consensus 249 ~~L~L~~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l-~~ll~~~p~L~~L~l~ 305 (413)
+.|+|+++.- .+... ....+++|+.|+++++.- ..+ ...+..+++|+.|+++
T Consensus 84 ~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 84 NEILLTSNRLENVQHK----MFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp CEEECCSSCCCCCCGG----GGTTCSSCCEEECTTSCC-CCBCTTSSTTCTTCSEEECT
T ss_pred CEEECCCCccCccCHh----HhcCCcCCCEEECCCCcC-CeECHhHcCCCccCCEEECC
Confidence 8888888741 11111 123467788888876521 111 1223345555555554
No 133
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.93 E-value=4.4e-07 Score=78.66 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=25.4
Q ss_pred CCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccc
Q 044749 192 SGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCV 256 (413)
Q Consensus 192 ~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~ 256 (413)
++|++|+|+++ .++... ......+++|++|+|++|.|+.-....+. .+++|+.|+|+++
T Consensus 56 ~~L~~L~Ls~N-~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~----~l~~L~~L~L~~N 114 (220)
T 2v9t_B 56 KKLRRIDLSNN-QISELA-PDAFQGLRSLNSLVLYGNKITELPKSLFE----GLFSLQLLLLNAN 114 (220)
T ss_dssp TTCCEEECCSS-CCCEEC-TTTTTTCSSCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSS
T ss_pred CCCCEEECCCC-cCCCcC-HHHhhCCcCCCEEECCCCcCCccCHhHcc----CCCCCCEEECCCC
Confidence 44555555554 333210 11123355555555555554432211111 2335555555554
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.91 E-value=1.1e-07 Score=88.67 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=20.0
Q ss_pred cCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEeecccccCCC
Q 044749 353 VCANLTSLNFSYATITADQLKPVICNCHKLQIFGPSIQYVMKDF 396 (413)
Q Consensus 353 ~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~c~~i~d~ 396 (413)
.+++|+.|+|++|.++.-. ...+.+|++|.+.++..++..
T Consensus 200 ~l~~L~~LdLs~N~l~~lp----~~~~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 200 GASGPVILDISRTRIHSLP----SYGLENLKKLRARSTYNLKKL 239 (350)
T ss_dssp TEECCSEEECTTSCCCCCC----SSSCTTCCEEECTTCTTCCCC
T ss_pred cCcccchhhcCCCCcCccC----hhhhccchHhhhccCCCcCcC
Confidence 4456666666666543211 022445555555555555443
No 135
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.91 E-value=6.8e-07 Score=83.67 Aligned_cols=104 Identities=13% Similarity=-0.006 Sum_probs=48.9
Q ss_pred CCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccC-CCCHHHHHHHHHh
Q 044749 193 GFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDC-AINFEALEKLVAR 271 (413)
Q Consensus 193 ~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~~l~~l~~~ 271 (413)
.++.|+|+++ .++......+...+++|++|+|++|.|+.-....+. .+++|+.|+|+++.- .+... ....
T Consensus 40 ~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~----~l~~L~~L~Ls~N~l~~~~~~----~~~~ 110 (361)
T 2xot_A 40 YTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV----PVPNLRYLDLSSNHLHTLDEF----LFSD 110 (361)
T ss_dssp TCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSSCCCEECTT----TTTT
T ss_pred CCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhcc----CCCCCCEEECCCCcCCcCCHH----HhCC
Confidence 4666666665 444321111111466666666666665543322222 334666666666531 01000 1123
Q ss_pred CCCCcEEEcccccChHHHHHHHhcCCCCceeccc
Q 044749 272 SPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTG 305 (413)
Q Consensus 272 ~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~ 305 (413)
+++|+.|+++++.-.......+..+++|++|+++
T Consensus 111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 144 (361)
T 2xot_A 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcCCCEEECCCCcccEECHHHhCCcccCCEEECC
Confidence 5666666666642111112234455666666665
No 136
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.83 E-value=4.4e-06 Score=74.50 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=34.4
Q ss_pred ccCCCCcchHHHHHHHHHhhcCCcchhh-HHHHHhHHHHHhhcC
Q 044749 63 YQSQYPDQVLEIVLENVLQFLTSRRDRN-AASLVCKSWWRAEAL 105 (413)
Q Consensus 63 ~~~~LP~e~~~~il~~Ifs~L~~~~d~~-~~~~vcr~W~~~~~~ 105 (413)
.+..||+| +|.+||+||+ .++++ +|++|||+|+.+..+
T Consensus 50 ~~~~LP~e----ll~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~~~ 88 (297)
T 2e31_A 50 YLAELPEP----LLLRVLAELP-ATELVQACRLVCLRWKELVDG 88 (297)
T ss_dssp CTTSSCHH----HHHHHHHTSC-HHHHHHTGGGTCHHHHHHHTS
T ss_pred ChhhCCHH----HHHHHHHcCC-HHHHHHHHHHHhHHHHHHhcC
Confidence 46789999 9999999995 99999 999999999998654
No 137
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.81 E-value=3.6e-06 Score=72.79 Aligned_cols=103 Identities=19% Similarity=0.093 Sum_probs=59.7
Q ss_pred CCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccC-CCCHHHHHHHHH
Q 044749 192 SGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDC-AINFEALEKLVA 270 (413)
Q Consensus 192 ~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~~l~~l~~ 270 (413)
++|+.|+|+++ .+....- .....+++|++|+|++|.|+.-....+.. +++|+.|+|+++.- .+... ...
T Consensus 32 ~~l~~L~l~~n-~i~~i~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~----l~~L~~L~Ls~N~l~~l~~~----~f~ 101 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPP-GAFSPYKKLRRIDLSNNQISELAPDAFQG----LRSLNSLVLYGNKITELPKS----LFE 101 (220)
T ss_dssp TTCCEEECCSS-CCCEECT-TSSTTCTTCCEEECCSSCCCEECTTTTTT----CSSCCEEECCSSCCCCCCTT----TTT
T ss_pred cCCCEEECCCC-cCCCcCH-hHhhCCCCCCEEECCCCcCCCcCHHHhhC----CcCCCEEECCCCcCCccCHh----Hcc
Confidence 46899999887 5543211 12345788999999988877544333443 44888888888741 11111 123
Q ss_pred hCCCCcEEEcccccChHHH-HHHHhcCCCCceeccc
Q 044749 271 RSPFLRKLRLNRHVSIRQL-YRLMVRAPQLTHLGTG 305 (413)
Q Consensus 271 ~~~~L~~L~l~~~~~~~~l-~~ll~~~p~L~~L~l~ 305 (413)
.+++|+.|+++++. +..+ ...+..+++|+.|+++
T Consensus 102 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 102 GLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECC
Confidence 46777788777652 1111 1233445566666655
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.80 E-value=1.9e-05 Score=72.77 Aligned_cols=84 Identities=18% Similarity=0.188 Sum_probs=52.2
Q ss_pred CCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCC--h-------H---------HH-HHHHHh--------CC
Q 044749 166 YPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFG--T-------C---------GL-AFIASK--------CR 218 (413)
Q Consensus 166 ~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~--~-------~---------~l-~~~~~~--------~~ 218 (413)
.+++++|.+++. +....+..+...+++|+.|+|+++ .+. . . .+ .....+ |+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n-~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNA-EIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEE-EECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcc-eeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence 367889999874 566677777776789999999887 443 0 0 00 011235 78
Q ss_pred cCcEEEccccccccccchhhhccCccCCCcceEEeccc
Q 044749 219 QLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCV 256 (413)
Q Consensus 219 ~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~ 256 (413)
+|++|+|.. .+..-+ -.+| .+|++|+.|++...
T Consensus 102 ~L~~l~L~~-~i~~I~---~~aF-~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIE---DAAF-KGCDNLKICQIRKK 134 (329)
T ss_dssp TCCC-CBCT-TCCEEC---TTTT-TTCTTCCEEEBCCS
T ss_pred CCcEEECCc-cccchh---HHHh-hcCcccceEEcCCC
Confidence 888888876 433222 1112 35778888888655
No 139
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.76 E-value=5.3e-06 Score=73.11 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=35.4
Q ss_pred cccCCCCcchHHHHHHHHHhhcCCcchhhHHHHHhHHHHHhhcCC
Q 044749 62 EYQSQYPDQVLEIVLENVLQFLTSRRDRNAASLVCKSWWRAEALT 106 (413)
Q Consensus 62 d~~~~LP~e~~~~il~~Ifs~L~~~~d~~~~~~vcr~W~~~~~~~ 106 (413)
..+..||+| |+.+||+|| +++|+++++.|||+|+.+..+.
T Consensus 3 ~~l~~LP~e----i~l~IlsfL-~p~DL~~l~~vcr~Wr~la~D~ 42 (312)
T 3l2o_B 3 STLTRLPID----VQLYILSFL-SPHDLCQLGSTNHYWNETVRDP 42 (312)
T ss_dssp CHHHHSCHH----HHHHHHHTS-CHHHHHHHHTTCHHHHHHHTCH
T ss_pred chhHhCCHH----HHHHHHhcC-CHHHHHHHHHHHHHHHHHhccc
Confidence 346789999 999999999 6999999999999999986543
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.66 E-value=2e-05 Score=78.17 Aligned_cols=124 Identities=19% Similarity=0.121 Sum_probs=73.8
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGET 246 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~ 246 (413)
..|+.|+|+++.++. +.. ...+++|+.|+|+++ .++ .++.....+++|+.|+|++|.++.- ..+. .++
T Consensus 441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~l~~l--p~l~----~l~ 508 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDNALENV--DGVA----NLP 508 (567)
T ss_dssp TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSSCCCCC--GGGT----TCS
T ss_pred cCceEEEecCCCCCC--CcC-ccccccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCCCCCCC--cccC----CCC
Confidence 457788888876553 222 233477888888877 555 2223345688888888888877651 1233 345
Q ss_pred CcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccC---hHHHHHHHhcCCCCceecc
Q 044749 247 CLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVS---IRQLYRLMVRAPQLTHLGT 304 (413)
Q Consensus 247 ~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~---~~~l~~ll~~~p~L~~L~l 304 (413)
+|+.|+|+++. ++..........+++|+.|+++++.- ......++..+|+|+.|++
T Consensus 509 ~L~~L~Ls~N~--l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 509 RLQELLLCNNR--LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCEEECCSSC--CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcEEECCCCC--CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88888888774 21100011123578888888887621 1123345566788888753
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.48 E-value=2.2e-05 Score=66.34 Aligned_cols=105 Identities=15% Similarity=0.046 Sum_probs=57.3
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGET 246 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~ 246 (413)
++|++|+|+++.++. +......+++|+.|+|+++ .++...- .....+++|++|+|++|.|+.-....+. .++
T Consensus 31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~----~l~ 102 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNN-RISTLSN-QSFSNMTQLLTLILSYNRLRCIPPRTFD----GLK 102 (193)
T ss_dssp TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTT----TCT
T ss_pred CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCC-cCCEeCH-hHccCCCCCCEEECCCCccCEeCHHHhC----CCC
Confidence 567778887775542 1112233467777777776 4442211 1134567778888877776654422233 334
Q ss_pred CcceEEeccccCC-CCHHHHHHHHHhCCCCcEEEcccc
Q 044749 247 CLESLIFDCVDCA-INFEALEKLVARSPFLRKLRLNRH 283 (413)
Q Consensus 247 ~L~~L~L~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~ 283 (413)
+|+.|+|+++.-. +... ....+++|+.|+++++
T Consensus 103 ~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 103 SLRLLSLHGNDISVVPEG----AFNDLSALSHLAIGAN 136 (193)
T ss_dssp TCCEEECCSSCCCBCCTT----TTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCeeChh----hhhcCccccEEEeCCC
Confidence 7777777776311 1111 1123566777777654
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.48 E-value=1.4e-05 Score=66.44 Aligned_cols=83 Identities=14% Similarity=0.083 Sum_probs=38.0
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGET 246 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~ 246 (413)
++|++|+++++.++.... .....+++|++|+++++ .++... ......+++|++|++++|.++......+. .++
T Consensus 28 ~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----~l~ 100 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSQN-QIQSLP-DGVFDKLTKLTILYLHENKLQSLPNGVFD----KLT 100 (177)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCT
T ss_pred CCCcEEEeCCCcccEeCH-HHhcCcccccEEECCCC-cceEeC-hhHccCCCccCEEECCCCCccccCHHHhh----CCc
Confidence 456666666654432110 01122355666666655 333211 01123456666666666665533211122 233
Q ss_pred CcceEEeccc
Q 044749 247 CLESLIFDCV 256 (413)
Q Consensus 247 ~L~~L~L~~~ 256 (413)
+|+.|+++++
T Consensus 101 ~L~~L~l~~N 110 (177)
T 2o6r_A 101 QLKELALDTN 110 (177)
T ss_dssp TCCEEECCSS
T ss_pred ccCEEECcCC
Confidence 6666666555
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.47 E-value=7.3e-06 Score=69.21 Aligned_cols=108 Identities=13% Similarity=0.031 Sum_probs=53.8
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGET 246 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~ 246 (413)
++|++|+++++.++..........+++|++|+|+++ .++... ......+++|++|+|++|.++......+. ..+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~l~ 102 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIE-PNAFEGASHIQELQLGENKIKEISNKMFL----GLH 102 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBC-TTTTTTCTTCCEEECCSCCCCEECSSSST----TCT
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcC-HhHcCCcccCCEEECCCCcCCccCHHHhc----CCC
Confidence 367777777765542111111233466777777766 443211 11234467777777777766554322232 234
Q ss_pred CcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccc
Q 044749 247 CLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRH 283 (413)
Q Consensus 247 ~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 283 (413)
+|+.|+|+++. ++... .......++|+.|+++++
T Consensus 103 ~L~~L~L~~N~--l~~~~-~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 103 QLKTLNLYDNQ--ISCVM-PGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp TCCEEECCSSC--CCEEC-TTSSTTCTTCCEEECTTC
T ss_pred CCCEEECCCCc--CCeeC-HHHhhcCCCCCEEEeCCC
Confidence 77777776663 11000 001123456666666654
No 144
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.40 E-value=4.9e-05 Score=72.64 Aligned_cols=45 Identities=31% Similarity=0.670 Sum_probs=40.4
Q ss_pred ccccccCCCCcchHHHHHHHHHhhcCCcchhhHHHHHhHHHHHhhc
Q 044749 59 TVTEYQSQYPDQVLEIVLENVLQFLTSRRDRNAASLVCKSWWRAEA 104 (413)
Q Consensus 59 ~~~d~~~~LP~e~~~~il~~Ifs~L~~~~d~~~~~~vcr~W~~~~~ 104 (413)
-..|.+..||+|.|+.|+.+||+|| +.++++++++|||+|+++..
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~ 50 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYL-DAKSLCAAELVCKEWYRVTS 50 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTC-CHHHHHHHHHHCHHHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhc
Confidence 3468889999999988999999999 59999999999999998754
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.39 E-value=1.3e-05 Score=82.03 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=61.7
Q ss_pred ccCCCcceEEeccccC-CCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccCcCCCcccccCCCChh
Q 044749 243 EGETCLESLIFDCVDC-AINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEP 321 (413)
Q Consensus 243 ~~~~~L~~L~L~~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~ 321 (413)
..++.|+.|+|+++.. .+... ...+++|+.|+|+++. +..+...+..+++|+.|+++.....
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~-----~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~----------- 283 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISAN-----IFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLT----------- 283 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGG-----GGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCS-----------
T ss_pred ccCCCCcEEECCCCCCCCCChh-----hcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCC-----------
Confidence 3456899999988741 12211 1257888999988863 2234444567888888888743221
Q ss_pred hHHHHHhhCCCccccc-CCcccChhhHhhHhhcCCCCCEEEeecccCCh
Q 044749 322 DYIAAFAACKSLVCLS-GFREITPDYLSAIYPVCANLTSLNFSYATITA 369 (413)
Q Consensus 322 ~~~~~~~~~~~L~~L~-~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~ 369 (413)
.+...+..+++|+.|. ..+.++ .++.-...+++|+.|+|++|.++.
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred ccChhhcCCCCCCEEECCCCCCC--ccChhhhcCCCccEEeCCCCccCC
Confidence 1111234566677766 333343 222223456777777777777654
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.32 E-value=1.6e-05 Score=67.05 Aligned_cols=124 Identities=15% Similarity=0.052 Sum_probs=78.1
Q ss_pred cEEeeeCCccCHHHHHHHHH-hCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCc
Q 044749 170 EKVYLKRMSITDDDLALLAE-SFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCL 248 (413)
Q Consensus 170 ~~L~L~~~~l~~~~l~~l~~-~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L 248 (413)
+.++++++.++. +.. ..++|+.|.++++ .++..........+++|++|+|++|.|+......+.. +++|
T Consensus 11 ~~l~~s~~~l~~-----ip~~~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----l~~L 80 (192)
T 1w8a_A 11 TTVDCTGRGLKE-----IPRDIPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----ASHI 80 (192)
T ss_dssp TEEECTTSCCSS-----CCSCCCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT----CTTC
T ss_pred CEEEcCCCCcCc-----CccCCCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC----cccC
Confidence 566776664432 111 1237999999988 5543221112457899999999999988654334444 4599
Q ss_pred ceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccChHHHHHHHhcCCCCceecccC
Q 044749 249 ESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSIRQLYRLMVRAPQLTHLGTGK 306 (413)
Q Consensus 249 ~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~ll~~~p~L~~L~l~~ 306 (413)
+.|+|+++. +....- .....+++|+.|+++++.-.......+..+++|++|+++.
T Consensus 81 ~~L~Ls~N~--l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 81 QELQLGENK--IKEISN-KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CEEECCSCC--CCEECS-SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CEEECCCCc--CCccCH-HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 999999884 111000 0123478999999998632111233456688999999874
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.32 E-value=3.9e-05 Score=64.76 Aligned_cols=103 Identities=22% Similarity=0.188 Sum_probs=70.2
Q ss_pred CCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccC-CCCHHHHHHHHH
Q 044749 192 SGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDC-AINFEALEKLVA 270 (413)
Q Consensus 192 ~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~~l~~l~~ 270 (413)
++|++|.|+++ .++. +......+++|+.|+|++|.|+.-....+. .+++|+.|+|+++.- .+.... ..
T Consensus 31 ~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~----~l~~L~~L~Ls~N~l~~i~~~~----f~ 99 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFS----NMTQLLTLILSYNRLRCIPPRT----FD 99 (193)
T ss_dssp TTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCCBCCTTT----TT
T ss_pred CCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCcCCEeCHhHcc----CCCCCCEEECCCCccCEeCHHH----hC
Confidence 57999999988 6653 223356789999999999998865533344 445999999998841 121111 23
Q ss_pred hCCCCcEEEcccccChHHH-HHHHhcCCCCceecccC
Q 044749 271 RSPFLRKLRLNRHVSIRQL-YRLMVRAPQLTHLGTGK 306 (413)
Q Consensus 271 ~~~~L~~L~l~~~~~~~~l-~~ll~~~p~L~~L~l~~ 306 (413)
.+++|+.|+++++. +..+ ...+..+++|+.|+++.
T Consensus 100 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 100 GLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp TCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCC
Confidence 57899999999863 2222 22455678899998874
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.30 E-value=2.4e-05 Score=80.03 Aligned_cols=82 Identities=17% Similarity=0.075 Sum_probs=37.2
Q ss_pred hCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCcc
Q 044749 165 AYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEG 244 (413)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~ 244 (413)
.++.|+.|+|+++.+.. +..-...+++|++|+|++| .++ .+......+++|+.|+|++|.|+ ..+..+..
T Consensus 222 ~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~---- 291 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS---- 291 (727)
T ss_dssp CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG----
T ss_pred cCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC----
Confidence 34556666666554331 0000113455666666655 443 12222344556666666666554 22222222
Q ss_pred CCCcceEEeccc
Q 044749 245 ETCLESLIFDCV 256 (413)
Q Consensus 245 ~~~L~~L~L~~~ 256 (413)
+++|+.|+|+++
T Consensus 292 l~~L~~L~L~~N 303 (727)
T 4b8c_D 292 CFQLKYFYFFDN 303 (727)
T ss_dssp GTTCSEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 335666666555
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.30 E-value=0.00096 Score=58.94 Aligned_cols=69 Identities=22% Similarity=0.287 Sum_probs=43.1
Q ss_pred HHHHHHhCCCCcEEEeCCCCCCCh-HHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEecccc
Q 044749 184 LALLAESFSGFKELTLVCCEGFGT-CGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVD 257 (413)
Q Consensus 184 l~~l~~~~~~L~~L~L~~c~~~~~-~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~ 257 (413)
+..+...+++|+.|+|+++ .++. .++..+...+++|+.|+|++|.|.+.. .+..+. .. +|++|+|.++.
T Consensus 162 l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l~~l~-~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 162 LRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSER--ELDKIK-GL-KLEELWLDGNS 231 (267)
T ss_dssp HHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG--GGGGGT-TS-CCSEEECTTST
T ss_pred HHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCch--hhhhcc-cC-CcceEEccCCc
Confidence 3344456677888888777 4443 234445567888888888888877541 133333 22 77778777764
No 150
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.24 E-value=6.7e-05 Score=72.11 Aligned_cols=41 Identities=12% Similarity=0.193 Sum_probs=37.1
Q ss_pred cccccCCCCcchHHHHHHHHHhhcCCcchhhHHHHHhHHHHHhhcC
Q 044749 60 VTEYQSQYPDQVLEIVLENVLQFLTSRRDRNAASLVCKSWWRAEAL 105 (413)
Q Consensus 60 ~~d~~~~LP~e~~~~il~~Ifs~L~~~~d~~~~~~vcr~W~~~~~~ 105 (413)
..|.+..||+| ++.+||+|| +.+++++|++|||+|+++...
T Consensus 11 ~~d~~~~lp~~----~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 11 KRDLITSLPFE----ISLKIFNYL-QFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCHHHHSCHH----HHHHHHTTS-CHHHHHHHHTTCHHHHHHHTT
T ss_pred ccCChHHCCHH----HHHHHHhcC-CHHHHHHHHHHHHHHHHHHcC
Confidence 35788999999 999999999 599999999999999998654
No 151
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.10 E-value=6.7e-06 Score=76.48 Aligned_cols=183 Identities=16% Similarity=0.067 Sum_probs=94.3
Q ss_pred CCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEe-cccc-CCCCHHHHHHHH
Q 044749 192 SGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIF-DCVD-CAINFEALEKLV 269 (413)
Q Consensus 192 ~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L-~~~~-~~~~~~~l~~l~ 269 (413)
+++++|+|+++ .++... .....++++|++|+|++|.+..... -..| .++++|.++.+ .++. ..+..+. .
T Consensus 30 ~~l~~L~Ls~N-~i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~i~--~~~f-~~L~~l~~~l~~~~N~l~~l~~~~----f 100 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIE--ADVF-SNLPKLHEIRIEKANNLLYINPEA----F 100 (350)
T ss_dssp TTCSEEEEESC-CCSEEC-TTSSTTCTTCCEEEEECCTTCCEEC--TTSB-CSCTTCCEEEEEEETTCCEECTTS----B
T ss_pred CCCCEEEccCC-cCCCcC-HHHHcCCCCCCEEECcCCCCCCccC--hhHh-hcchhhhhhhcccCCcccccCchh----h
Confidence 57999999988 665321 1123568999999999998654221 1111 23446665444 3331 0121111 2
Q ss_pred HhCCCCcEEEcccccChHHHH-HHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhh-CCCccccc-CCcccChhh
Q 044749 270 ARSPFLRKLRLNRHVSIRQLY-RLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAA-CKSLVCLS-GFREITPDY 346 (413)
Q Consensus 270 ~~~~~L~~L~l~~~~~~~~l~-~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~L~~L~-~~~~i~~~~ 346 (413)
..+++|+.|+++++.- ..+. .......++..|++........ .. ...+.. ...++.|. +.+.++.-
T Consensus 101 ~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~------l~---~~~f~~~~~~l~~L~L~~N~i~~i- 169 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHT------IE---RNSFVGLSFESVILWLNKNGIQEI- 169 (350)
T ss_dssp CCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCE------EC---TTSSTTSBSSCEEEECCSSCCCEE-
T ss_pred hhcccccccccccccc-ccCCchhhcccchhhhhhhcccccccc------cc---ccchhhcchhhhhhccccccccCC-
Confidence 3578999999988621 1110 1112334556666542211100 00 001112 23466665 33233321
Q ss_pred HhhHhhcCCCCCEEEeeccc-CChhhHHHHHhcCCCCCEEEeecccccCCCc
Q 044749 347 LSAIYPVCANLTSLNFSYAT-ITADQLKPVICNCHKLQIFGPSIQYVMKDFR 397 (413)
Q Consensus 347 l~~l~~~~~~L~~L~Ls~~~-it~~~l~~l~~~~~~L~~L~l~~c~~i~d~~ 397 (413)
+.-.-...+|++|+++.++ ++.-. ...+..+++|+.|+|+++. ++..+
T Consensus 170 -~~~~f~~~~L~~l~l~~~n~l~~i~-~~~f~~l~~L~~LdLs~N~-l~~lp 218 (350)
T 4ay9_X 170 -HNSAFNGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTR-IHSLP 218 (350)
T ss_dssp -CTTSSTTEEEEEEECTTCTTCCCCC-TTTTTTEECCSEEECTTSC-CCCCC
T ss_pred -ChhhccccchhHHhhccCCcccCCC-HHHhccCcccchhhcCCCC-cCccC
Confidence 1111134678999998655 54321 1234678999999999874 45443
No 152
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.07 E-value=0.00019 Score=68.54 Aligned_cols=40 Identities=25% Similarity=0.452 Sum_probs=36.6
Q ss_pred cccccCCCCcchHHHHHHHHHhhcCCcchhhHHHHHhHHHHHhhc
Q 044749 60 VTEYQSQYPDQVLEIVLENVLQFLTSRRDRNAASLVCKSWWRAEA 104 (413)
Q Consensus 60 ~~d~~~~LP~e~~~~il~~Ifs~L~~~~d~~~~~~vcr~W~~~~~ 104 (413)
..|.+..||+| ++.+||+|| +.+|+++++.|||+|+.+..
T Consensus 15 ~~d~~~~lp~e----~~~~i~~~l-~~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 15 QRDFISLLPKE----LALYVLSFL-EPKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCSTTTSSCHH----HHHHHHTTS-CHHHHHHHTTSCHHHHHHHT
T ss_pred cCChhHHCCHH----HHHHHHHhC-CHHHHHHHHHHhHHHHhhcC
Confidence 46889999999 999999999 59999999999999998754
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.03 E-value=0.00029 Score=58.25 Aligned_cols=109 Identities=14% Similarity=0.084 Sum_probs=70.1
Q ss_pred CCCccEEEecCCCCCcccCCCCCCCCCCchHHHHHHHhhCCCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCC
Q 044749 127 FRRVRSVVLKGKPRFADFNLMPPDWGAHFGPWVCVLANAYPWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFG 206 (413)
Q Consensus 127 ~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~ 206 (413)
+++++.|++.++. +.. ++.. ....+++|+.|+++++.++.-.. .....+++|+.|+++++ .++
T Consensus 27 ~~~l~~L~l~~n~-l~~---~~~~-----------~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N-~l~ 89 (177)
T 2o6r_A 27 PSSATRLELESNK-LQS---LPHG-----------VFDKLTQLTKLSLSQNQIQSLPD-GVFDKLTKLTILYLHEN-KLQ 89 (177)
T ss_dssp CTTCSEEECCSSC-CCC---CCTT-----------TTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCC
T ss_pred CCCCcEEEeCCCc-ccE---eCHH-----------HhcCcccccEEECCCCcceEeCh-hHccCCCccCEEECCCC-Ccc
Confidence 4688899888653 211 1110 01256899999999987653111 11234578999999998 555
Q ss_pred hHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEecccc
Q 044749 207 TCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVD 257 (413)
Q Consensus 207 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~ 257 (413)
... ......+++|++|++++|.++.-....+. .+++|+.|++.++.
T Consensus 90 ~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 90 SLP-NGVFDKLTQLKELALDTNQLKSVPDGIFD----RLTSLQKIWLHTNP 135 (177)
T ss_dssp CCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTT----TCTTCCEEECCSSC
T ss_pred ccC-HHHhhCCcccCEEECcCCcceEeCHHHhc----CCcccCEEEecCCC
Confidence 321 11235689999999999998753322222 45589999998885
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.88 E-value=0.0002 Score=58.89 Aligned_cols=37 Identities=24% Similarity=0.135 Sum_probs=16.5
Q ss_pred hCCcCcEEEccccccccccchhhhccCccCCCcceEEeccc
Q 044749 216 KCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCV 256 (413)
Q Consensus 216 ~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~ 256 (413)
.+++|++|+|++|.|+.-....+. .+++|+.|+|+++
T Consensus 52 ~l~~L~~L~Ls~N~l~~l~~~~f~----~l~~L~~L~L~~N 88 (170)
T 3g39_A 52 RLTQLTRLDLDNNQLTVLPAGVFD----KLTQLTQLSLNDN 88 (170)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTT----TCTTCCEEECCSS
T ss_pred CcccCCEEECCCCCcCccChhhcc----CCCCCCEEECCCC
Confidence 345555555555554432211122 2235555555554
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.87 E-value=0.00056 Score=60.47 Aligned_cols=72 Identities=19% Similarity=0.181 Sum_probs=51.0
Q ss_pred HHHHHHhhCCCCcEEeeeCCccCH-HHHHHHHHhCCCCcEEEeCCCCCCChH-HHHHHHHhCCcCcEEEcccccccc
Q 044749 158 WVCVLANAYPWLEKVYLKRMSITD-DDLALLAESFSGFKELTLVCCEGFGTC-GLAFIASKCRQLRVLDLIETEVTD 232 (413)
Q Consensus 158 ~l~~l~~~~~~L~~L~L~~~~l~~-~~l~~l~~~~~~L~~L~L~~c~~~~~~-~l~~~~~~~~~L~~L~L~~~~i~~ 232 (413)
.+..+...+++|+.|+|+++.++. ..+..+...+++|+.|+|+++ .+... .+..+ ..+ +|++|+|.+|.+..
T Consensus 161 ~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l-~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 161 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKI-KGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGG-TTS-CCSEEECTTSTTGG
T ss_pred HHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhc-ccC-CcceEEccCCcCcc
Confidence 334444679999999999997764 123334456799999999988 66643 23222 123 89999999999765
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.75 E-value=0.0003 Score=58.13 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=7.3
Q ss_pred CCcCcEEEccccccc
Q 044749 217 CRQLRVLDLIETEVT 231 (413)
Q Consensus 217 ~~~L~~L~L~~~~i~ 231 (413)
+++|+.|+|++|.|+
T Consensus 56 l~~L~~L~Ls~N~l~ 70 (174)
T 2r9u_A 56 LVNLQQLYFNSNKLT 70 (174)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CcCCCEEECCCCCCC
Confidence 444555555554443
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.67 E-value=0.00064 Score=64.22 Aligned_cols=11 Identities=18% Similarity=0.169 Sum_probs=5.1
Q ss_pred cCCCCCEEEee
Q 044749 353 VCANLTSLNFS 363 (413)
Q Consensus 353 ~~~~L~~L~Ls 363 (413)
.|.+|+.|.|.
T Consensus 321 ~c~~L~~l~lp 331 (401)
T 4fdw_A 321 GNRKVTQLTIP 331 (401)
T ss_dssp TCCSCCEEEEC
T ss_pred CCCCccEEEEC
Confidence 34444444443
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.56 E-value=0.00011 Score=69.52 Aligned_cols=188 Identities=12% Similarity=0.121 Sum_probs=103.3
Q ss_pred hCCCCcEEeeeCCc---cCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccc--cccccchhhh
Q 044749 165 AYPWLEKVYLKRMS---ITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETE--VTDDEVDWIS 239 (413)
Q Consensus 165 ~~~~L~~L~L~~~~---l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~--i~~~~~~~l~ 239 (413)
.|++|+.++|.++. +.+..+. +.+|+.+.|... +...+- ....+|++|+.+++..+- |.+..
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF~-----~~~L~~l~lp~~--l~~I~~-~aF~~~~~L~~l~l~~~l~~I~~~a----- 244 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTFV-----YAGIEEVLLPVT--LKEIGS-QAFLKTSQLKTIEIPENVSTIGQEA----- 244 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTTT-----TCCCSEEECCTT--CCEECT-TTTTTCTTCCCEECCTTCCEECTTT-----
T ss_pred CcccCCeeecCCCcceEechhhEe-----ecccCEEEeCCc--hheehh-hHhhCCCCCCEEecCCCccCccccc-----
Confidence 56777777776542 3332221 356777777532 221111 123458888888886531 32222
Q ss_pred ccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccCh----HHH-HHHHhcCCCCceecccCcCCCcccc
Q 044749 240 LFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVSI----RQL-YRLMVRAPQLTHLGTGKYGPSEVAQ 314 (413)
Q Consensus 240 ~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~----~~l-~~ll~~~p~L~~L~l~~~~~~~~~~ 314 (413)
|.. .+|+.+.+......+....+ ..|++|+.+.+.+.... ..+ ...+..|++|+.+.+.. ...
T Consensus 245 -F~~--~~L~~i~lp~~i~~I~~~aF----~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~---- 312 (401)
T 4fdw_A 245 -FRE--SGITTVKLPNGVTNIASRAF----YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR---- 312 (401)
T ss_dssp -TTT--CCCSEEEEETTCCEECTTTT----TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC----
T ss_pred -ccc--CCccEEEeCCCccEEChhHh----hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE----
Confidence 221 47888888554323333232 36888999988664211 001 34466788899988762 111
Q ss_pred cCCCChhhHHHHHhhCCCccccc---CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCC-CCCEEEeec
Q 044749 315 RQGDTEPDYIAAFAACKSLVCLS---GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCH-KLQIFGPSI 389 (413)
Q Consensus 315 ~~g~~~~~~~~~~~~~~~L~~L~---~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~-~L~~L~l~~ 389 (413)
.--..++..|.+|+.+. ....+... .+..| +|+.|++..+.+..-. ......|+ +++.|++..
T Consensus 313 ------~I~~~aF~~c~~L~~l~lp~~l~~I~~~----aF~~~-~L~~l~l~~n~~~~l~-~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 313 ------ILGQGLLGGNRKVTQLTIPANVTQINFS----AFNNT-GIKEVKVEGTTPPQVF-EKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp ------EECTTTTTTCCSCCEEEECTTCCEECTT----SSSSS-CCCEEEECCSSCCBCC-CSSCCCSCTTCCEEEECG
T ss_pred ------EEhhhhhcCCCCccEEEECccccEEcHH----hCCCC-CCCEEEEcCCCCcccc-cccccCCCCCccEEEeCH
Confidence 00112456788888876 33233322 22567 9999999987632211 11124554 788998865
No 159
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.99 E-value=0.0022 Score=52.78 Aligned_cols=84 Identities=13% Similarity=0.103 Sum_probs=52.8
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGET 246 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~ 246 (413)
++|+.|+|+++.++.-... ....+++|++|+|+++ .++... ..+...+++|++|+|++|.|..-....+. .++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~----~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPG-VFDHLVNLQQLYFNSN-KLTAIP-TGVFDKLTQLTQLDLNDNHLKSIPRGAFD----NLK 105 (174)
T ss_dssp TTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCT
T ss_pred CCCcEEEeCCCCccccCHH-HhcCCcCCCEEECCCC-CCCccC-hhHhCCcchhhEEECCCCccceeCHHHhc----ccc
Confidence 7888999988866532111 1223578999999887 554311 11234678899999988887653322233 344
Q ss_pred CcceEEecccc
Q 044749 247 CLESLIFDCVD 257 (413)
Q Consensus 247 ~L~~L~L~~~~ 257 (413)
+|+.|+|.++.
T Consensus 106 ~L~~L~L~~N~ 116 (174)
T 2r9u_A 106 SLTHIYLYNNP 116 (174)
T ss_dssp TCSEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 78888887764
No 160
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.92 E-value=0.0021 Score=52.68 Aligned_cols=84 Identities=15% Similarity=0.078 Sum_probs=53.0
Q ss_pred CCCcEEeeeCCccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCC
Q 044749 167 PWLEKVYLKRMSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGET 246 (413)
Q Consensus 167 ~~L~~L~L~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~ 246 (413)
++|+.|+|+++.++.-.... ...+++|++|+|+++ .++... ......+++|++|+|++|.|+.-....+. .++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~-~~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~~~~~----~l~ 102 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGV-FDRLTQLTRLDLDNN-QLTVLP-AGVFDKLTQLTQLSLNDNQLKSIPRGAFD----NLK 102 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTT-TTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCT
T ss_pred CCCcEEEcCCCcCCccChhh-hcCcccCCEEECCCC-CcCccC-hhhccCCCCCCEEECCCCccCEeCHHHhc----CCC
Confidence 78888999888665321111 123578999999887 554221 11235688899999998887654322233 344
Q ss_pred CcceEEecccc
Q 044749 247 CLESLIFDCVD 257 (413)
Q Consensus 247 ~L~~L~L~~~~ 257 (413)
+|+.|+|.++.
T Consensus 103 ~L~~L~L~~N~ 113 (170)
T 3g39_A 103 SLTHIWLLNNP 113 (170)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 78888887764
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.01 E-value=0.0047 Score=56.85 Aligned_cols=85 Identities=14% Similarity=0.126 Sum_probs=49.2
Q ss_pred hCCCCcEEeeeC-CccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCc
Q 044749 165 AYPWLEKVYLKR-MSITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPE 243 (413)
Q Consensus 165 ~~~~L~~L~L~~-~~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~ 243 (413)
.+.+|+.|+|++ +.++.-.... ...+++|+.|+|+++ .++... .....++++|+.|+|++|.++.-....+..
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--- 102 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS-GLRFVA-PDAFHFTPRLSRLNLSFNALESLSWKTVQG--- 102 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSS-CCCEEC-TTGGGSCSCCCEEECCSSCCSCCCSTTTCS---
T ss_pred CCCCeeEEEccCCCCCCCcChhH-hccccCCCEEECCCC-ccceeC-HHHhcCCcCCCEEeCCCCccceeCHHHccc---
Confidence 446788888875 6544211111 123467888888877 554321 112356888888888888876433111211
Q ss_pred cCCCcceEEecccc
Q 044749 244 GETCLESLIFDCVD 257 (413)
Q Consensus 244 ~~~~L~~L~L~~~~ 257 (413)
. .|+.|+|.++.
T Consensus 103 -~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 103 -L-SLQELVLSGNP 114 (347)
T ss_dssp -C-CCCEEECCSSC
T ss_pred -C-CceEEEeeCCC
Confidence 1 38888887764
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=92.86 E-value=0.019 Score=52.66 Aligned_cols=83 Identities=14% Similarity=0.106 Sum_probs=53.3
Q ss_pred CCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccCccCCCcceEEeccccC-CCCHHHHHHHH
Q 044749 191 FSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFPEGETCLESLIFDCVDC-AINFEALEKLV 269 (413)
Q Consensus 191 ~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~~l~~l~ 269 (413)
+.+|+.|+|+++..++... ......+++|+.|+|++|.|+.-....+.. +++|+.|+|+++.- .+... +.
T Consensus 30 ~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~----l~~L~~L~l~~N~l~~~~~~----~~ 100 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSGLRFVAPDAFHF----TPRLSRLNLSFNALESLSWK----TV 100 (347)
T ss_dssp CSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSCCCEECTTGGGS----CSCCCEEECCSSCCSCCCST----TT
T ss_pred CCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCCccceeCHHHhcC----CcCCCEEeCCCCccceeCHH----Hc
Confidence 3579999998632655321 112456899999999999987654333444 44999999998841 11111 11
Q ss_pred HhCCCCcEEEcccc
Q 044749 270 ARSPFLRKLRLNRH 283 (413)
Q Consensus 270 ~~~~~L~~L~l~~~ 283 (413)
. ...|+.|++.++
T Consensus 101 ~-~~~L~~l~l~~N 113 (347)
T 2ifg_A 101 Q-GLSLQELVLSGN 113 (347)
T ss_dssp C-SCCCCEEECCSS
T ss_pred c-cCCceEEEeeCC
Confidence 1 233999999875
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.99 E-value=0.077 Score=49.64 Aligned_cols=56 Identities=29% Similarity=0.502 Sum_probs=31.7
Q ss_pred HHhhCCCccccc---CCcccChhhHhhHhhcCCCCCEEEeeccc--CChhhHHHHHhcCCCCCEEEeec
Q 044749 326 AFAACKSLVCLS---GFREITPDYLSAIYPVCANLTSLNFSYAT--ITADQLKPVICNCHKLQIFGPSI 389 (413)
Q Consensus 326 ~~~~~~~L~~L~---~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~--it~~~l~~l~~~~~~L~~L~l~~ 389 (413)
++..|.+|+.+. +...+++. ....|.+|+.++|..+- |.+.+ ...|++|+.++|..
T Consensus 315 aF~~c~~L~~i~lp~~v~~I~~~----aF~~c~~L~~i~lp~~l~~I~~~a----F~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYLVEEIGKR----SFRGCTSLSNINFPLSLRKIGANA----FQGCINLKKVELPK 375 (394)
T ss_dssp TTTTCTTCCEECCCTTCCEECTT----TTTTCTTCCEECCCTTCCEECTTT----BTTCTTCCEEEEEG
T ss_pred hhcCCCCCCEEEeCCcccEEhHH----hccCCCCCCEEEECccccEehHHH----hhCCCCCCEEEECC
Confidence 345566666665 22233322 22467778888776542 33332 35778888887754
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.23 E-value=0.44 Score=44.36 Aligned_cols=120 Identities=17% Similarity=0.248 Sum_probs=60.4
Q ss_pred cCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccC-hHHHHHHHhcCCCCceecccCcCCCcccccCCCChhh
Q 044749 244 GETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVS-IRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPD 322 (413)
Q Consensus 244 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~-~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~ 322 (413)
.|..|+.+.+......+....+ ..|++|+.+.+..... +. ...+..|.+|+.+.+.. ... .-
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~aF----~~c~~L~~i~l~~~i~~I~--~~aF~~c~~L~~i~lp~-~v~----------~I 325 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGAF----MNCPALQDIEFSSRITELP--ESVFAGCISLKSIDIPE-GIT----------QI 325 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTTT----TTCTTCCEEECCTTCCEEC--TTTTTTCTTCCEEECCT-TCC----------EE
T ss_pred ecccccEEecccccceecCccc----ccccccccccCCCcccccC--ceeecCCCCcCEEEeCC-ccc----------Ee
Confidence 6778888887654323333222 3578888888765321 11 22356677788777652 100 00
Q ss_pred HHHHHhhCCCccccc---CCcccChhhHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEEEee
Q 044749 323 YIAAFAACKSLVCLS---GFREITPDYLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIFGPS 388 (413)
Q Consensus 323 ~~~~~~~~~~L~~L~---~~~~i~~~~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~ 388 (413)
-..++..|.+|+.+. ....+++. .+..|.+|+.+++..+.... .-...|.+|+.+.+.
T Consensus 326 ~~~aF~~C~~L~~i~ip~sv~~I~~~----aF~~C~~L~~i~~~~~~~~~----~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 326 LDDAFAGCEQLERIAIPSSVTKIPES----AFSNCTALNNIEYSGSRSQW----NAISTDSGLQNLPVA 386 (394)
T ss_dssp CTTTTTTCTTCCEEEECTTCCBCCGG----GGTTCTTCCEEEESSCHHHH----HTCBCCCCC------
T ss_pred hHhHhhCCCCCCEEEECcccCEEhHh----HhhCCCCCCEEEECCceeeh----hhhhccCCCCEEEeC
Confidence 012455667777665 33333322 22567778877777654211 112456667776654
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=85.54 E-value=0.56 Score=43.67 Aligned_cols=100 Identities=20% Similarity=0.335 Sum_probs=65.9
Q ss_pred HhCCCCcEEEcccccC-hHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc---CCcccChh
Q 044749 270 ARSPFLRKLRLNRHVS-IRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS---GFREITPD 345 (413)
Q Consensus 270 ~~~~~L~~L~l~~~~~-~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~---~~~~i~~~ 345 (413)
..|..|+.+.+..... +. ...+..|+.|+.+.+... .. .--..++..|.+|+.+. +...+++.
T Consensus 262 ~~c~~L~~i~lp~~~~~I~--~~aF~~c~~L~~i~l~~~-i~----------~I~~~aF~~c~~L~~i~lp~~v~~I~~~ 328 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIG--TGAFMNCPALQDIEFSSR-IT----------ELPESVFAGCISLKSIDIPEGITQILDD 328 (394)
T ss_dssp TTCSSCCEEECCTTCCEEC--TTTTTTCTTCCEEECCTT-CC----------EECTTTTTTCTTCCEEECCTTCCEECTT
T ss_pred eecccccEEecccccceec--CcccccccccccccCCCc-cc----------ccCceeecCCCCcCEEEeCCcccEehHh
Confidence 4689999999876421 11 234567899999987621 11 11112567789999876 44445443
Q ss_pred hHhhHhhcCCCCCEEEeeccc--CChhhHHHHHhcCCCCCEEEeecc
Q 044749 346 YLSAIYPVCANLTSLNFSYAT--ITADQLKPVICNCHKLQIFGPSIQ 390 (413)
Q Consensus 346 ~l~~l~~~~~~L~~L~Ls~~~--it~~~l~~l~~~~~~L~~L~l~~c 390 (413)
.+..|.+|+.+.|..+- |.+.+ ..+|.+|+.+++.+.
T Consensus 329 ----aF~~C~~L~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 329 ----AFAGCEQLERIAIPSSVTKIPESA----FSNCTALNNIEYSGS 367 (394)
T ss_dssp ----TTTTCTTCCEEEECTTCCBCCGGG----GTTCTTCCEEEESSC
T ss_pred ----HhhCCCCCCEEEECcccCEEhHhH----hhCCCCCCEEEECCc
Confidence 23678999999997542 55444 468999999999774
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=84.45 E-value=1.1 Score=41.69 Aligned_cols=158 Identities=15% Similarity=0.207 Sum_probs=86.1
Q ss_pred CCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccc--cccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHH
Q 044749 192 SGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETE--VTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLV 269 (413)
Q Consensus 192 ~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~--i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~ 269 (413)
.+|+.+.+... +...+ ......|..|+.+.+..+. +.... ...|..++.+.+.... +... ..
T Consensus 230 ~~l~~i~ip~~--~~~i~-~~~f~~~~~l~~~~~~~~~~~i~~~~-------F~~~~~l~~~~~~~~~--i~~~----~F 293 (394)
T 4fs7_A 230 TGVKNIIIPDS--FTELG-KSVFYGCTDLESISIQNNKLRIGGSL-------FYNCSGLKKVIYGSVI--VPEK----TF 293 (394)
T ss_dssp CCCCEEEECTT--CCEEC-SSTTTTCSSCCEEEECCTTCEECSCT-------TTTCTTCCEEEECSSE--ECTT----TT
T ss_pred CCCceEEECCC--ceecc-cccccccccceeEEcCCCcceeeccc-------cccccccceeccCcee--eccc----cc
Confidence 45666666532 11100 0123468899998887653 22222 1245677777665442 2211 12
Q ss_pred HhCCCCcEEEcccccC-hHHHHHHHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc---CCcccChh
Q 044749 270 ARSPFLRKLRLNRHVS-IRQLYRLMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS---GFREITPD 345 (413)
Q Consensus 270 ~~~~~L~~L~l~~~~~-~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~---~~~~i~~~ 345 (413)
..|.+|+.+.+..... +. ...+..|.+|+.+.+.. ... .--..++..|.+|+.+. +...+++.
T Consensus 294 ~~~~~L~~i~l~~~i~~I~--~~aF~~c~~L~~i~lp~-~v~----------~I~~~aF~~c~~L~~i~lp~~l~~I~~~ 360 (394)
T 4fs7_A 294 YGCSSLTEVKLLDSVKFIG--EEAFESCTSLVSIDLPY-LVE----------EIGKRSFRGCTSLSNINFPLSLRKIGAN 360 (394)
T ss_dssp TTCTTCCEEEECTTCCEEC--TTTTTTCTTCCEECCCT-TCC----------EECTTTTTTCTTCCEECCCTTCCEECTT
T ss_pred cccccccccccccccceec--hhhhcCCCCCCEEEeCC-ccc----------EEhHHhccCCCCCCEEEECccccEehHH
Confidence 3578888888765421 11 23356788888888752 111 00012456788888876 33344332
Q ss_pred hHhhHhhcCCCCCEEEeecccCChhhHHHHHhcCCCCCEE
Q 044749 346 YLSAIYPVCANLTSLNFSYATITADQLKPVICNCHKLQIF 385 (413)
Q Consensus 346 ~l~~l~~~~~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L 385 (413)
....|.+|+.++|..+- +.- ..-..+|++|+.+
T Consensus 361 ----aF~~C~~L~~i~lp~~~-~~~--~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 ----AFQGCINLKKVELPKRL-EQY--RYDFEDTTKFKWI 393 (394)
T ss_dssp ----TBTTCTTCCEEEEEGGG-GGG--GGGBCTTCEEEEE
T ss_pred ----HhhCCCCCCEEEECCCC-EEh--hheecCCCCCcEE
Confidence 23678999999997653 111 1123577777765
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=68.17 E-value=1.4 Score=40.62 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=71.5
Q ss_pred hCCCCcEEeeeCC--ccCHHHHHHHHHhCCCCcEEEeCCCCCCChHHHHHHHHhCCcCcEEEccccccccccchhhhccC
Q 044749 165 AYPWLEKVYLKRM--SITDDDLALLAESFSGFKELTLVCCEGFGTCGLAFIASKCRQLRVLDLIETEVTDDEVDWISLFP 242 (413)
Q Consensus 165 ~~~~L~~L~L~~~--~l~~~~l~~l~~~~~~L~~L~L~~c~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~l~ 242 (413)
.+.+|+.+.+... .+.+.. ...+.+|+.+.+... ++..+- ....+|.+|+.+.+... +..-+ -..|
T Consensus 215 ~~~~l~~i~~~~~~~~i~~~~----f~~~~~L~~i~lp~~--v~~I~~-~aF~~~~~l~~i~l~~~-i~~i~---~~aF- 282 (379)
T 4h09_A 215 YGKNLKKITITSGVTTLGDGA----FYGMKALDEIAIPKN--VTSIGS-FLLQNCTALKTLNFYAK-VKTVP---YLLC- 282 (379)
T ss_dssp TCSSCSEEECCTTCCEECTTT----TTTCSSCCEEEECTT--CCEECT-TTTTTCTTCCEEEECCC-CSEEC---TTTT-
T ss_pred cccccceeeeccceeEEcccc----ccCCccceEEEcCCC--ccEeCc-cccceeehhcccccccc-ceecc---cccc-
Confidence 5677888887654 333321 223567888888642 221111 12346888999888643 22111 1122
Q ss_pred ccCCCcceEEecccc-CCCCHHHHHHHHHhCCCCcEEEccccc-ChHHHHHHHhcCCCCceeccc
Q 044749 243 EGETCLESLIFDCVD-CAINFEALEKLVARSPFLRKLRLNRHV-SIRQLYRLMVRAPQLTHLGTG 305 (413)
Q Consensus 243 ~~~~~L~~L~L~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~l~~ll~~~p~L~~L~l~ 305 (413)
.+|.+|+.+.+.... ..+....+ ..|.+|+++.+.... .+. ...+..|.+|+.+.+.
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF----~~c~~L~~i~lp~~l~~I~--~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVF----MDCVKLSSVTLPTALKTIQ--VYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTT----TTCTTCCEEECCTTCCEEC--TTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccccceehhhhh----cCCCCCCEEEcCccccEEH--HHHhhCCCCCCEEEEC
Confidence 367899999987542 13433333 468999999987542 122 2346678999998875
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=64.31 E-value=6 Score=30.09 Aligned_cols=14 Identities=21% Similarity=0.159 Sum_probs=7.5
Q ss_pred cCcEEEcccccccc
Q 044749 219 QLRVLDLIETEVTD 232 (413)
Q Consensus 219 ~L~~L~L~~~~i~~ 232 (413)
+|++|+|++|.|+.
T Consensus 32 ~l~~L~Ls~N~l~~ 45 (130)
T 3rfe_A 32 DTTELVLTGNNLTA 45 (130)
T ss_dssp TCSEEECTTSCCSS
T ss_pred CCCEEECCCCcCCc
Confidence 45555555555443
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=59.43 E-value=2.5 Score=38.81 Aligned_cols=124 Identities=16% Similarity=0.232 Sum_probs=64.8
Q ss_pred HhCCcCcEEEccccc--cccccchhhhccCccCCCcceEEeccccCCCCHHHHHHHHHhCCCCcEEEcccccC-hHHHHH
Q 044749 215 SKCRQLRVLDLIETE--VTDDEVDWISLFPEGETCLESLIFDCVDCAINFEALEKLVARSPFLRKLRLNRHVS-IRQLYR 291 (413)
Q Consensus 215 ~~~~~L~~L~L~~~~--i~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~-~~~l~~ 291 (413)
..|.+|+.+.+...- +.+.. ...|..|+.+.+......+....+ ..|.+|+.+.+..... +. ..
T Consensus 214 ~~~~~l~~i~~~~~~~~i~~~~-------f~~~~~L~~i~lp~~v~~I~~~aF----~~~~~l~~i~l~~~i~~i~--~~ 280 (379)
T 4h09_A 214 SYGKNLKKITITSGVTTLGDGA-------FYGMKALDEIAIPKNVTSIGSFLL----QNCTALKTLNFYAKVKTVP--YL 280 (379)
T ss_dssp TTCSSCSEEECCTTCCEECTTT-------TTTCSSCCEEEECTTCCEECTTTT----TTCTTCCEEEECCCCSEEC--TT
T ss_pred ccccccceeeeccceeEEcccc-------ccCCccceEEEcCCCccEeCcccc----ceeehhccccccccceecc--cc
Confidence 356777777775431 22211 125667777777554222332222 3467777777754321 11 12
Q ss_pred HHhcCCCCceecccCcCCCcccccCCCChhhHHHHHhhCCCccccc---CCcccChhhHhhHhhcCCCCCEEEeecc
Q 044749 292 LMVRAPQLTHLGTGKYGPSEVAQRQGDTEPDYIAAFAACKSLVCLS---GFREITPDYLSAIYPVCANLTSLNFSYA 365 (413)
Q Consensus 292 ll~~~p~L~~L~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~L~~L~---~~~~i~~~~l~~l~~~~~~L~~L~Ls~~ 365 (413)
.+..|.+|+.+.+....... --..++..|.+|+.+. +...+++. ....|.+|+.+.|..+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~----------I~~~aF~~c~~L~~i~lp~~l~~I~~~----aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIET----------LEPRVFMDCVKLSSVTLPTALKTIQVY----AFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCE----------ECTTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccccccce----------ehhhhhcCCCCCCEEEcCccccEEHHH----HhhCCCCCCEEEECCc
Confidence 34567778777764211110 0012456677777765 33344332 2257888888888643
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=44.84 E-value=8.1 Score=29.34 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=18.7
Q ss_pred CCCCEEEeecccCChhhHHHHHhcCCCCCEEEeec
Q 044749 355 ANLTSLNFSYATITADQLKPVICNCHKLQIFGPSI 389 (413)
Q Consensus 355 ~~L~~L~Ls~~~it~~~l~~l~~~~~~L~~L~l~~ 389 (413)
.+|++|+|++|.|+.-. ..++...++|+.|+|.+
T Consensus 31 ~~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALP-PGLLDALPALRTAHLGA 64 (130)
T ss_dssp TTCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCS
T ss_pred cCCCEEECCCCcCCccC-hhhhhhccccCEEEecC
Confidence 35667777766643221 12234566677776665
No 171
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=22.28 E-value=62 Score=19.31 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=14.9
Q ss_pred ccccCCCCcchHHHHHHHHHhhc
Q 044749 61 TEYQSQYPDQVLEIVLENVLQFL 83 (413)
Q Consensus 61 ~d~~~~LP~e~~~~il~~Ifs~L 83 (413)
.+-+..||.| |-.+|++--
T Consensus 18 ~eVF~~LP~d----IQ~Ells~~ 36 (48)
T 2kwv_A 18 QEVFKQLPAD----IQEEILSGK 36 (48)
T ss_dssp GGGTTTSCHH----HHHHHTTCC
T ss_pred HHHHHHCcHH----HHHHHHhcc
Confidence 3458899999 999998754
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.49 E-value=47 Score=23.69 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=18.0
Q ss_pred HHhhCCCccccc---CCcccChhhHhhHhhcCCCCCEEEeec
Q 044749 326 AFAACKSLVCLS---GFREITPDYLSAIYPVCANLTSLNFSY 364 (413)
Q Consensus 326 ~~~~~~~L~~L~---~~~~i~~~~l~~l~~~~~~L~~L~Ls~ 364 (413)
++.+|.+|+.+. ....|++.. +..|.+|+.+.+..
T Consensus 15 aF~~c~~L~~i~iP~~v~~Ig~~a----F~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPNIGLLYDGM----FSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTTSSCCCTTS----STTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCchheEcHHH----HhccCCccEEEEcC
Confidence 345566666655 333333322 14566666666654
Done!