BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044750
(658 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 15/151 (9%)
Query: 192 LPMSIYGLNRLRTLLI------YDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSP 245
LP SI LNRLR L I + L S+ G L L++L +
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG------- 194
Query: 246 NFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKL 305
IR +P +I L +LK L + + L + L L +LD+R C LR P G
Sbjct: 195 --IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252
Query: 306 MNMRSLLNGQTYSLKYMPIGISKLTSLRTLE 336
++ L+ +L +P+ I +LT L L+
Sbjct: 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 248 IREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELP---AGIGK 304
+ E+P+ + L+ L L+ + LP ++ L LR+L IR CP L ELP A
Sbjct: 116 LXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175
Query: 305 LMNMRSLLNGQTYSLKY-----MPIGISKLTSLRTLE 336
+ L+N Q+ L++ +P I+ L +L++L+
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK 212
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 16/153 (10%)
Query: 241 SHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPA 300
S P P F P+ +L HL++ + + LP+T + L L + R P LR LPA
Sbjct: 90 SVPLPQF----PDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNP-LRALPA 144
Query: 301 GIGKLMNMRSLLNGQTYSLKYMPIGISK---------LTSLRTLEKFVVGGGVDGGSTCR 351
I L +R L L +P ++ L +L++L G S
Sbjct: 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN 204
Query: 352 LESLKNLQLLRKCGIEGLS-NVSHLDEAERIGL 383
L++LK+L+ +R + L + HL + E + L
Sbjct: 205 LQNLKSLK-IRNSPLSALGPAIHHLPKLEELDL 236
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 163 EIDGNKESVINSFGDKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGL 222
+ G + ++N ++ L L + G LP SI L L++L I + S S++ P +
Sbjct: 174 DASGEHQGLVN-----LQSLRLEWTGIRSLPASIANLQNLKSLKIRN---SPLSALGPAI 225
Query: 223 FSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELC-IERLPETLCEL 281
L L L +R ++ +R P G LK L L + + LP + L
Sbjct: 226 H-HLPKLEELDLRGCTA--------LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276
Query: 282 YNLRKLDIRRCPNLRELPAGIGKL 305
L KLD+R C NL LP+ I +L
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 27/119 (22%)
Query: 539 NISIMPRLSSLWIRGCPKLKALPDYLLQSTA---------LQELRIYFCDL--------- 580
+I+ + RL L IR CP+L LP+ L + A LQ LR+ + +
Sbjct: 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN 204
Query: 581 LEELPILEDRKTT---------DIPRLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRC 630
L+ L L+ R + +P+L L++ C L+ P L+ LI+ C
Sbjct: 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 19/159 (11%)
Query: 179 VRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLS 238
VR+L L GG L I L L L + S+ G+F KL L+ LV+ +
Sbjct: 65 VRYLAL---GGNKL-HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-- 118
Query: 239 SFSHPSPNFIREIPENI-GKLIHLKYLNLSELCIERLPETLCE-LYNLRKLDIRRCPNLR 296
N ++ +P+ + KL +L YLNL+ ++ LP+ + + L NL +LD+ L+
Sbjct: 119 -------NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQ 170
Query: 297 ELPAGI-GKLMNMRSLLNGQTYSLKYMPIGI-SKLTSLR 333
LP G+ KL ++ L Q LK +P G+ +LTSL+
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQ 208
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 18/126 (14%)
Query: 213 SLRSSILP-GLFSKLACLRALVIRQLSSFSHPSPNFIREIPENI-GKLIHLKYLNLSELC 270
SL+S LP G+F +L L L + N ++ +P + KL L YLNLS
Sbjct: 39 SLKS--LPNGVFDELTSLTQLYL---------GGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 271 IERLPETLCE-LYNLRKLDIRRCPNLRELPAGI-GKLMNMRSLLNGQTYSLKYMPIGI-S 327
++ LP + + L L++L + L+ LP G+ KL ++ L Q LK +P G+
Sbjct: 88 LQSLPNGVFDKLTQLKELAL-NTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFD 145
Query: 328 KLTSLR 333
+LTSL+
Sbjct: 146 RLTSLQ 151
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 274 LPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGI-SKLTSL 332
LP+ EL NL LD+ +C + P L +++ +LN + LK +P GI +LTSL
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ-VLNMASNQLKSVPDGIFDRLTSL 520
Query: 333 RTL 335
+ +
Sbjct: 521 QKI 523
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 588 EDRKTTDIPRLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCPLLENRYREGE--GEDW 645
ED K ++ L+ +E+ CP L LP + L+ +LI C NR GE +DW
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEXQLINVAC----NRGISGEQLKDDW 295
Query: 646 HKISHIPYIE 655
++ P E
Sbjct: 296 QALADAPVGE 305
>pdb|3QXY|A Chain A, Human Setd6 In Complex With Rela Lys310
pdb|3QXY|B Chain B, Human Setd6 In Complex With Rela Lys310
pdb|3RC0|A Chain A, Human Setd6 In Complex With Rela Lys310 Peptide
pdb|3RC0|B Chain B, Human Setd6 In Complex With Rela Lys310 Peptide
Length = 449
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 17/80 (21%)
Query: 513 FPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQE 572
F +LK D GG ++ EE SL I PKLKA LLQ++ L
Sbjct: 357 FRELKDQDGGGDDKREE-----------------GSLTITNIPKLKASWRQLLQNSVLLT 399
Query: 573 LRIYFCDLLEELPILEDRKT 592
L+ Y DL + +L +++
Sbjct: 400 LQTYATDLKTDQGLLSNKEV 419
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,169,901
Number of Sequences: 62578
Number of extensions: 713003
Number of successful extensions: 1428
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1414
Number of HSP's gapped (non-prelim): 21
length of query: 658
length of database: 14,973,337
effective HSP length: 105
effective length of query: 553
effective length of database: 8,402,647
effective search space: 4646663791
effective search space used: 4646663791
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)