Query 044750
Match_columns 658
No_of_seqs 347 out of 3633
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 06:25:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.9E-54 6.4E-59 470.7 20.9 432 2-462 341-784 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.1E-46 4.7E-51 432.5 31.7 508 3-634 375-907 (1153)
3 PLN00113 leucine-rich repeat r 100.0 1.2E-29 2.6E-34 294.3 17.5 427 176-633 139-584 (968)
4 PLN00113 leucine-rich repeat r 100.0 3E-29 6.5E-34 291.0 18.1 411 176-633 117-560 (968)
5 KOG0472 Leucine-rich repeat pr 99.9 1.8E-25 4E-30 210.7 -4.4 405 179-631 47-539 (565)
6 KOG0444 Cytoskeletal regulator 99.9 2.1E-25 4.4E-30 221.4 -4.8 361 177-634 7-376 (1255)
7 PLN03210 Resistant to P. syrin 99.9 7.2E-22 1.6E-26 229.2 23.3 342 176-584 557-909 (1153)
8 KOG0444 Cytoskeletal regulator 99.9 1.1E-24 2.4E-29 216.2 -2.3 347 176-613 31-379 (1255)
9 KOG4194 Membrane glycoprotein 99.9 7.6E-23 1.7E-27 201.9 3.7 359 176-627 77-446 (873)
10 KOG4194 Membrane glycoprotein 99.8 6.7E-22 1.4E-26 195.3 4.6 344 199-631 77-427 (873)
11 KOG0618 Serine/threonine phosp 99.8 1.5E-22 3.2E-27 210.5 -6.0 135 179-331 47-181 (1081)
12 KOG0472 Leucine-rich repeat pr 99.8 1.4E-22 3.1E-27 191.4 -7.6 378 177-609 68-541 (565)
13 KOG0618 Serine/threonine phosp 99.7 1.9E-20 4E-25 195.1 -6.0 199 423-636 239-467 (1081)
14 PF00931 NB-ARC: NB-ARC domain 99.6 4.4E-17 9.6E-22 161.8 0.7 101 3-105 182-286 (287)
15 PRK15387 E3 ubiquitin-protein 99.6 3.1E-14 6.8E-19 153.8 16.5 261 200-613 201-462 (788)
16 KOG4658 Apoptotic ATPase [Sign 99.5 9.2E-15 2E-19 161.4 6.2 154 197-366 520-675 (889)
17 KOG0617 Ras suppressor protein 99.5 9.5E-16 2.1E-20 128.5 -5.4 135 180-327 59-193 (264)
18 PRK15370 E3 ubiquitin-protein 99.4 4.6E-13 1E-17 145.8 12.6 72 246-325 188-259 (754)
19 KOG0617 Ras suppressor protein 99.4 8.4E-15 1.8E-19 122.9 -3.2 147 176-337 32-180 (264)
20 PRK15387 E3 ubiquitin-protein 99.4 7.7E-12 1.7E-16 135.5 17.1 117 179-324 203-319 (788)
21 PRK15370 E3 ubiquitin-protein 99.4 1.9E-12 4.2E-17 141.0 12.3 81 228-325 200-280 (754)
22 KOG4237 Extracellular matrix p 99.4 7.2E-14 1.6E-18 132.9 -1.3 132 174-317 64-199 (498)
23 KOG4237 Extracellular matrix p 99.2 1E-12 2.3E-17 125.1 -4.3 88 540-631 270-357 (498)
24 cd00116 LRR_RI Leucine-rich re 99.1 2.2E-12 4.9E-17 130.4 -3.4 66 251-316 43-118 (319)
25 cd00116 LRR_RI Leucine-rich re 99.1 8.5E-12 1.8E-16 126.2 -1.4 64 253-316 17-91 (319)
26 KOG4341 F-box protein containi 99.0 2.2E-11 4.7E-16 117.2 -3.5 134 512-656 318-456 (483)
27 KOG3207 Beta-tubulin folding c 98.7 4.5E-09 9.8E-14 102.1 0.8 14 446-459 170-183 (505)
28 PF14580 LRR_9: Leucine-rich r 98.7 1.8E-08 4E-13 89.3 4.6 127 198-341 17-151 (175)
29 PF14580 LRR_9: Leucine-rich r 98.7 2.9E-08 6.3E-13 88.1 5.5 121 178-313 20-147 (175)
30 KOG0532 Leucine-rich repeat (L 98.7 7.1E-10 1.5E-14 111.0 -5.6 106 219-336 90-195 (722)
31 KOG0532 Leucine-rich repeat (L 98.6 3E-09 6.5E-14 106.7 -1.8 164 184-367 105-268 (722)
32 KOG2120 SCF ubiquitin ligase, 98.5 3.7E-09 8E-14 97.5 -5.0 61 260-320 186-248 (419)
33 COG4886 Leucine-rich repeat (L 98.5 1.1E-07 2.3E-12 99.1 4.2 118 204-336 97-215 (394)
34 PLN03150 hypothetical protein; 98.4 5.3E-07 1.2E-11 98.4 8.3 94 228-329 419-513 (623)
35 KOG4341 F-box protein containi 98.4 1.2E-08 2.6E-13 98.7 -4.4 120 511-636 291-417 (483)
36 PF13855 LRR_8: Leucine rich r 98.3 3.4E-07 7.4E-12 66.4 2.9 56 260-316 2-59 (61)
37 KOG1259 Nischarin, modulator o 98.3 8.1E-08 1.8E-12 88.8 -0.9 126 196-338 280-407 (490)
38 KOG3207 Beta-tubulin folding c 98.3 1.5E-07 3.3E-12 91.8 0.7 136 387-554 197-336 (505)
39 PLN03150 hypothetical protein; 98.3 9.4E-07 2E-11 96.5 6.4 78 260-337 419-497 (623)
40 KOG1909 Ran GTPase-activating 98.3 1.3E-07 2.9E-12 89.6 -0.7 83 255-337 26-127 (382)
41 PF13855 LRR_8: Leucine rich r 98.3 1.2E-06 2.5E-11 63.6 4.3 58 227-293 1-60 (61)
42 KOG1259 Nischarin, modulator o 98.2 1.7E-07 3.6E-12 86.8 -1.1 101 224-337 281-381 (490)
43 COG4886 Leucine-rich repeat (L 98.2 9.7E-07 2.1E-11 92.0 4.2 129 193-336 109-238 (394)
44 PF12799 LRR_4: Leucine Rich r 98.2 2.1E-06 4.7E-11 56.7 3.5 39 259-298 1-39 (44)
45 PRK15386 type III secretion pr 98.0 1.6E-05 3.5E-10 79.6 8.8 167 419-638 46-218 (426)
46 KOG1909 Ran GTPase-activating 98.0 6.4E-07 1.4E-11 85.1 -1.0 136 196-338 26-193 (382)
47 PRK15386 type III secretion pr 97.9 1.4E-05 3.1E-10 79.9 6.3 61 513-585 51-111 (426)
48 KOG2120 SCF ubiquitin ligase, 97.8 8.7E-07 1.9E-11 82.2 -3.8 160 383-578 206-373 (419)
49 PF12799 LRR_4: Leucine Rich r 97.8 2.3E-05 5.1E-10 51.8 3.7 40 227-275 1-40 (44)
50 KOG3665 ZYG-1-like serine/thre 97.4 9.9E-05 2.1E-09 80.6 3.8 129 178-319 123-263 (699)
51 KOG0531 Protein phosphatase 1, 97.2 5.4E-05 1.2E-09 79.0 -0.7 82 223-316 91-172 (414)
52 KOG3665 ZYG-1-like serine/thre 97.2 0.00013 2.8E-09 79.7 2.0 110 199-319 121-233 (699)
53 KOG2982 Uncharacterized conser 97.2 0.00014 3E-09 68.0 1.6 66 512-583 197-264 (418)
54 KOG1859 Leucine-rich repeat pr 97.1 1.6E-05 3.5E-10 82.8 -6.3 88 246-337 174-261 (1096)
55 KOG4579 Leucine-rich repeat (L 97.0 0.00017 3.7E-09 59.3 -0.2 70 246-316 63-133 (177)
56 KOG0531 Protein phosphatase 1, 96.8 0.00025 5.4E-09 74.1 -0.2 118 184-317 79-197 (414)
57 KOG1859 Leucine-rich repeat pr 96.8 3E-05 6.4E-10 80.9 -7.3 125 176-317 163-290 (1096)
58 KOG1947 Leucine rich repeat pr 96.8 6.3E-05 1.4E-09 80.9 -5.7 91 511-607 240-332 (482)
59 KOG1644 U2-associated snRNP A' 96.7 0.0028 6.1E-08 56.2 5.3 13 260-272 89-101 (233)
60 KOG4579 Leucine-rich repeat (L 96.7 0.00036 7.9E-09 57.5 -0.4 89 200-301 53-141 (177)
61 KOG1644 U2-associated snRNP A' 96.6 0.0026 5.6E-08 56.4 4.3 103 178-293 43-151 (233)
62 PF00560 LRR_1: Leucine Rich R 96.6 0.001 2.2E-08 36.4 1.1 21 260-280 1-21 (22)
63 KOG2739 Leucine-rich acidic nu 96.1 0.0031 6.8E-08 58.4 2.0 82 257-341 63-154 (260)
64 KOG2123 Uncharacterized conser 96.1 0.00062 1.3E-08 63.1 -2.6 100 198-312 17-123 (388)
65 KOG2982 Uncharacterized conser 95.9 0.0048 1E-07 58.0 2.4 83 542-627 197-286 (418)
66 KOG2739 Leucine-rich acidic nu 95.8 0.0078 1.7E-07 55.8 3.4 108 511-631 40-154 (260)
67 KOG2123 Uncharacterized conser 95.3 0.00099 2.1E-08 61.8 -4.3 60 510-574 59-123 (388)
68 KOG1947 Leucine rich repeat pr 95.2 0.0032 6.9E-08 67.6 -1.5 115 513-633 187-308 (482)
69 COG5238 RNA1 Ran GTPase-activa 94.9 0.012 2.6E-07 54.7 1.5 94 198-293 28-131 (388)
70 KOG3864 Uncharacterized conser 94.8 0.0046 9.9E-08 54.9 -1.4 67 511-581 122-189 (221)
71 PF13504 LRR_7: Leucine rich r 94.8 0.017 3.6E-07 29.2 1.2 16 260-275 2-17 (17)
72 PF00560 LRR_1: Leucine Rich R 94.7 0.0096 2.1E-07 32.5 0.2 20 283-303 1-20 (22)
73 COG5238 RNA1 Ran GTPase-activa 94.4 0.032 6.9E-07 52.0 2.9 85 223-316 26-130 (388)
74 KOG3864 Uncharacterized conser 93.2 0.0062 1.4E-07 54.1 -3.7 40 595-634 150-190 (221)
75 KOG0473 Leucine-rich repeat pr 92.7 0.0065 1.4E-07 55.0 -4.3 85 223-317 38-122 (326)
76 PF13504 LRR_7: Leucine rich r 92.6 0.074 1.6E-06 26.8 1.3 17 282-299 1-17 (17)
77 PF13306 LRR_5: Leucine rich r 92.0 0.52 1.1E-05 39.8 6.7 103 195-315 7-112 (129)
78 smart00370 LRR Leucine-rich re 91.6 0.15 3.2E-06 29.1 1.9 19 259-277 2-20 (26)
79 smart00369 LRR_TYP Leucine-ric 91.6 0.15 3.2E-06 29.1 1.9 19 259-277 2-20 (26)
80 smart00370 LRR Leucine-rich re 88.1 0.44 9.5E-06 27.1 2.0 21 281-302 1-21 (26)
81 smart00369 LRR_TYP Leucine-ric 88.1 0.44 9.5E-06 27.1 2.0 21 281-302 1-21 (26)
82 KOG0473 Leucine-rich repeat pr 87.0 0.017 3.7E-07 52.5 -6.5 86 196-294 38-123 (326)
83 smart00367 LRR_CC Leucine-rich 85.1 0.64 1.4E-05 26.5 1.6 14 596-609 2-15 (26)
84 PF13306 LRR_5: Leucine rich r 84.8 3.4 7.5E-05 34.7 6.8 112 178-308 13-128 (129)
85 PRK04841 transcriptional regul 84.4 5.4 0.00012 46.7 10.4 125 3-155 205-332 (903)
86 smart00364 LRR_BAC Leucine-ric 78.4 1.3 2.8E-05 25.2 1.1 17 260-276 3-19 (26)
87 PF13516 LRR_6: Leucine Rich r 78.0 0.99 2.1E-05 25.0 0.6 14 259-272 2-15 (24)
88 smart00365 LRR_SD22 Leucine-ri 69.1 3.6 7.8E-05 23.4 1.5 14 259-272 2-15 (26)
89 smart00368 LRR_RI Leucine rich 55.0 8.7 0.00019 22.3 1.4 14 259-272 2-15 (28)
90 KOG3763 mRNA export factor TAP 43.8 7.6 0.00016 40.7 -0.0 68 512-583 216-285 (585)
91 PRK00080 ruvB Holliday junctio 36.0 56 0.0012 32.8 4.8 104 3-129 202-310 (328)
92 PF05491 RuvB_C: Holliday junc 33.1 57 0.0012 24.4 3.1 34 3-38 11-45 (76)
93 PF11430 EGL-1: Programmed cel 30.6 35 0.00076 18.0 1.1 13 3-15 1-13 (21)
94 KOG3763 mRNA export factor TAP 26.1 38 0.00082 35.8 1.6 64 257-320 216-284 (585)
95 TIGR00635 ruvB Holliday juncti 24.5 1.7E+02 0.0037 28.9 6.0 62 54-129 226-289 (305)
96 KOG4062 6-O-methylguanine-DNA 22.3 86 0.0019 27.1 2.7 35 7-41 110-146 (178)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-54 Score=470.72 Aligned_cols=432 Identities=26% Similarity=0.330 Sum_probs=303.7
Q ss_pred hhhhHHHHHHhhCC-HHHHHHHHhhhcCCCCHHHHHHHHhccccc----cccccCcchHHHHhhccCCCCCCchhhHHhh
Q 044750 2 AHAIVSSLLDQLKS-IAQDQVIGNLLRSKCTVKEWQRILESEMWK----VEEIRKGLLAPLLLSYNDLPSNSMVKQCFSY 76 (658)
Q Consensus 2 ~~~~~~~i~~~c~g-Plai~~ig~~L~~~~~~~~W~~~~~~~~~~----~~~~~~~i~~~L~~sY~~L~~~~~~k~cFl~ 76 (658)
+.++|++||+||+| |||++|||++|++|.++++|+++.+.+.+. ..++.+.|+++|++|||+||+ ++|.||+|
T Consensus 341 i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~--~lK~CFLy 418 (889)
T KOG4658|consen 341 IEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE--ELKSCFLY 418 (889)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH--HHHHHHHh
Confidence 46899999999999 999999999999999999999998866555 333457799999999999996 99999999
Q ss_pred hcCCCCCceeCHHHHHHHHHHcCCcCCCc-chhHHHHHHHHHHHHHhccCceeeeecCCCCeeceEEcCHHHHHHHHHhh
Q 044750 77 CAVFPKDHYMHKKELIDMWMAQGYLNAEE-DEEMEMVGEEYFNILATHSFFQEFETYGGDNEFMRCKMHDIVHDFAQFVS 155 (658)
Q Consensus 77 ~~~fp~~~~i~~~~Li~~w~~~g~~~~~~-~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~mhdl~~d~~~~~~ 155 (658)
||+|||||+|++++||.|||||||+.+.+ +..+++.|+.|+.+|+.++|++..... ++.. +|+|||++||+|.+++
T Consensus 419 calFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~-~~kmHDvvRe~al~ia 495 (889)
T KOG4658|consen 419 CALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKE-TVKMHDVVREMALWIA 495 (889)
T ss_pred hccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--ccee-EEEeeHHHHHHHHHHh
Confidence 99999999999999999999999999955 588999999999999999999987654 3444 7999999999999999
Q ss_pred c-----cceEEEecC-CCcccccccCCCceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcc
Q 044750 156 R-----KECLWLEID-GNKESVINSFGDKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACL 229 (658)
Q Consensus 156 ~-----~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L 229 (658)
+ +++.+.... +....+....+..+|++++.++.+...+.. ..+++|++|.+.+|.... ......+|..|+.|
T Consensus 496 s~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~~l-~~is~~ff~~m~~L 573 (889)
T KOG4658|consen 496 SDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNSDWL-LEISGEFFRSLPLL 573 (889)
T ss_pred ccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCC-CCCCccceEEEeecchhh-hhcCHHHHhhCcce
Confidence 9 565444432 222233333467899999999988755544 366799999999986311 13345678999999
Q ss_pred cEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCc
Q 044750 230 RALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMR 309 (658)
Q Consensus 230 r~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 309 (658)
|||||++ |.....+|.++++|.+||||+++++.+..+|..+++|++|.+|++..+..+..+|.....|++||
T Consensus 574 rVLDLs~--------~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 574 RVLDLSG--------NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred EEEECCC--------CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 9999943 45678899999999999999999999999999999999999999999887777777677799999
Q ss_pred eeecCCcccCccCcCcCCCCCCCCccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCC
Q 044750 310 SLLNGQTYSLKYMPIGISKLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENL 389 (658)
Q Consensus 310 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L 389 (658)
+|.+.... ...-...++.+.+|+.|..+...... ...+..+..+..|+.+.+.-.... .........+..+.+|
T Consensus 646 ~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s----~~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L 719 (889)
T KOG4658|consen 646 VLRLPRSA-LSNDKLLLKELENLEHLENLSITISS----VLLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNL 719 (889)
T ss_pred EEEeeccc-cccchhhHHhhhcccchhhheeecch----hHhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCc
Confidence 99987763 11111224445555555433332221 111122222222222111100000 1112223445667777
Q ss_pred CceEEEecCccCCCCcccccCchhHHHHhhhcCCCCCCceEEEeeeCCCCCChhhhcccccceEEeeCCCCCC
Q 044750 390 LRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLNVEELQICFYGGDIFPKWLTSLTYLRELNLWFCFNCE 462 (658)
Q Consensus 390 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~ 462 (658)
+.|.+..+.+.+.......... ... .++++.++.+.++.....+.|....++|+.|.+..|...+
T Consensus 720 ~~L~i~~~~~~e~~~~~~~~~~--~~~------~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 720 EELSILDCGISEIVIEWEESLI--VLL------CFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLE 784 (889)
T ss_pred ceEEEEcCCCchhhcccccccc--hhh------hHHHHHHHHhhccccccccchhhccCcccEEEEecccccc
Confidence 7777777664321110000000 000 1223344444444444445555556666666666665544
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.1e-46 Score=432.54 Aligned_cols=508 Identities=23% Similarity=0.279 Sum_probs=326.1
Q ss_pred hhhHHHHHHhhCC-HHHHHHHHhhhcCCCCHHHHHHHHhccccccccccCcchHHHHhhccCCCCCCchhhHHhhhcCCC
Q 044750 3 HAIVSSLLDQLKS-IAQDQVIGNLLRSKCTVKEWQRILESEMWKVEEIRKGLLAPLLLSYNDLPSNSMVKQCFSYCAVFP 81 (658)
Q Consensus 3 ~~~~~~i~~~c~g-Plai~~ig~~L~~~~~~~~W~~~~~~~~~~~~~~~~~i~~~L~~sY~~L~~~~~~k~cFl~~~~fp 81 (658)
.++|.+||++||| ||||+++|+.|+++ +.++|+++++++.+.. +.+|.++|++|||+|+++ ..|.||+|+|+||
T Consensus 375 ~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~-~~k~~Fl~ia~ff 449 (1153)
T PLN03210 375 MELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL---DGKIEKTLRVSYDGLNNK-KDKAIFRHIACLF 449 (1153)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc---cHHHHHHHHHhhhccCcc-chhhhhheehhhc
Confidence 4789999999999 99999999999998 8999999998654432 246999999999999873 5899999999999
Q ss_pred CCceeCHHHHHHHHHHcCCcCCCcchhHHHHHHHHHHHHHhccCceeeeecCCCCeeceEEcCHHHHHHHHHhhccce--
Q 044750 82 KDHYMHKKELIDMWMAQGYLNAEEDEEMEMVGEEYFNILATHSFFQEFETYGGDNEFMRCKMHDIVHDFAQFVSRKEC-- 159 (658)
Q Consensus 82 ~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~mhdl~~d~~~~~~~~~~-- 159 (658)
.+..+ +.+..|.+.+.+.. +..++.|++++|++.... +++|||++|++|+.+++++.
T Consensus 450 ~~~~~---~~v~~~l~~~~~~~----------~~~l~~L~~ksLi~~~~~--------~~~MHdLl~~~~r~i~~~~~~~ 508 (1153)
T PLN03210 450 NGEKV---NDIKLLLANSDLDV----------NIGLKNLVDKSLIHVRED--------IVEMHSLLQEMGKEIVRAQSNE 508 (1153)
T ss_pred CCCCH---HHHHHHHHhcCCCc----------hhChHHHHhcCCEEEcCC--------eEEhhhHHHHHHHHHHHhhcCC
Confidence 98654 34677887765532 223889999999986431 58999999999999987653
Q ss_pred ------EEEecCCCcccccccCCCceEEEEEEcCCCCC---CCccccCCCcceEEEeecCCCCc---ccccccccccCC-
Q 044750 160 ------LWLEIDGNKESVINSFGDKVRHLGLNFEGGAP---LPMSIYGLNRLRTLLIYDKGPSL---RSSILPGLFSKL- 226 (658)
Q Consensus 160 ------~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~l- 226 (658)
+|...+-............++.+++....... .+..|.+|++|+.|.+..+.... ....++..|..+
T Consensus 509 ~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp 588 (1153)
T PLN03210 509 PGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP 588 (1153)
T ss_pred CCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcC
Confidence 12111100001122345678888887665543 34468899999999997653210 012234555555
Q ss_pred CcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCccccccc
Q 044750 227 ACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLM 306 (658)
Q Consensus 227 ~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 306 (658)
.+||.|++ .+ +.++.+|..+ ...+|++|++++|.+..+|..+..+++|+.|+|++|..+..+|. +..++
T Consensus 589 ~~Lr~L~~------~~---~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~ 657 (1153)
T PLN03210 589 PKLRLLRW------DK---YPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMAT 657 (1153)
T ss_pred cccEEEEe------cC---CCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCC
Confidence 46999999 55 6778899887 57899999999999999999999999999999999987888885 88899
Q ss_pred CCceeecCCcccCccCcCcCCCCCCCCccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcc
Q 044750 307 NMRSLLNGQTYSLKYMPIGISKLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNM 386 (658)
Q Consensus 307 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~ 386 (658)
+|+.|++++|..+..+|..++.+++|+.|++..+.. ....+..+ ++++|+.+.+.++.....++. .
T Consensus 658 ~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~--L~~Lp~~i----~l~sL~~L~Lsgc~~L~~~p~-------~- 723 (1153)
T PLN03210 658 NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN--LEILPTGI----NLKSLYRLNLSGCSRLKSFPD-------I- 723 (1153)
T ss_pred cccEEEecCCCCccccchhhhccCCCCEEeCCCCCC--cCccCCcC----CCCCCCEEeCCCCCCcccccc-------c-
Confidence 999999999998999999999999999886432211 11111111 233344444433322211110 1
Q ss_pred cCCCceEEEecCccCCCCcccccCchhHHHHhhhcCCCCCCceEEEeeeCCCCCChhhhcccccceEEeeCCCCCC----
Q 044750 387 ENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLNVEELQICFYGGDIFPKWLTSLTYLRELNLWFCFNCE---- 462 (658)
Q Consensus 387 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~---- 462 (658)
+.+++.|.+.++....+|..+ .+++|++|.+.++....
T Consensus 724 -------------------------------------~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 724 -------------------------------------STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred -------------------------------------cCCcCeeecCCCccccccccc-cccccccccccccchhhcccc
Confidence 234444444444444444433 34555555554432110
Q ss_pred --CCCC-CC-Ccc-ccceeccccccceEeCccccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccc
Q 044750 463 --HLPP-LG-KLP-LEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRK 537 (658)
Q Consensus 463 --~l~~-~~-~lp-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~ 537 (658)
.++. .. ..+ |+.|.+.++..+. .+|.+++.+++|+.|++++|..++.+..
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~--------------------~lP~si~~L~~L~~L~Ls~C~~L~~LP~----- 820 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLV--------------------ELPSSIQNLHKLEHLEIENCINLETLPT----- 820 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCcc--------------------ccChhhhCCCCCCEEECCCCCCcCeeCC-----
Confidence 0000 01 112 5555554443221 1233344566666666666655544321
Q ss_pred cccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCCCCC
Q 044750 538 ENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPNYLL 617 (658)
Q Consensus 538 ~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 617 (658)
.. .+++|+.|++++|..+..+|.. .++|++|++++|. ++.+| ..+..+++|+.|++++|++++.+|..+.
T Consensus 821 -~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~-i~~iP----~si~~l~~L~~L~L~~C~~L~~l~~~~~ 890 (1153)
T PLN03210 821 -GI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTG-IEEVP----WWIEKFSNLSFLDMNGCNNLQRVSLNIS 890 (1153)
T ss_pred -CC-CccccCEEECCCCCcccccccc---ccccCEeECCCCC-CccCh----HHHhcCCCCCEEECCCCCCcCccCcccc
Confidence 11 4556666666666555555443 2455566666553 33455 3455566666666666666666655555
Q ss_pred CCCCccEEEEecChhHH
Q 044750 618 RTTTLQELIIHRCPLLE 634 (658)
Q Consensus 618 ~l~~L~~L~l~~c~~l~ 634 (658)
.+++|+.+++++|+.++
T Consensus 891 ~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 891 KLKHLETVDFSDCGALT 907 (1153)
T ss_pred cccCCCeeecCCCcccc
Confidence 56666666666665554
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.2e-29 Score=294.27 Aligned_cols=427 Identities=19% Similarity=0.199 Sum_probs=228.6
Q ss_pred CCceEEEEEEcCCCC-CCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccccc
Q 044750 176 GDKVRHLGLNFEGGA-PLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPEN 254 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~ 254 (658)
...++.+.+.++.+. ..|..+..+++|+.|++++|... ...|..+.++++|++|++++| .....+|..
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~L~~n--------~l~~~~p~~ 207 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV---GKIPNSLTNLTSLEFLTLASN--------QLVGQIPRE 207 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc---ccCChhhhhCcCCCeeeccCC--------CCcCcCChH
Confidence 456777777777664 35666777778888888777543 344566777777777777322 223345666
Q ss_pred ccCCCccceeecCCcccc-ccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCC
Q 044750 255 IGKLIHLKYLNLSELCIE-RLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLR 333 (658)
Q Consensus 255 ~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 333 (658)
++++++|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|+.|++++|.....+|..+..+++|+
T Consensus 208 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 287 (968)
T PLN00113 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287 (968)
T ss_pred HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcC
Confidence 666666777777666665 5666666666677776666664456666666666666666666655555566666666666
Q ss_pred ccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCccccc----
Q 044750 334 TLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRR---- 409 (658)
Q Consensus 334 ~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~---- 409 (658)
.|++.. +...+..+..+..+ ++|+.+.+.+.. +....+..+..+++|+.|+++.+............
T Consensus 288 ~L~Ls~--n~l~~~~p~~~~~l---~~L~~L~l~~n~----~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L 358 (968)
T PLN00113 288 SLDLSD--NSLSGEIPELVIQL---QNLEILHLFSNN----FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL 358 (968)
T ss_pred EEECcC--CeeccCCChhHcCC---CCCcEEECCCCc----cCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCC
Confidence 665322 11111122222222 223222222211 11111122333444444444443311000000000
Q ss_pred ------CchhHHHHhhhcCCCCCCceEEEeeeCCC-CCChhhhcccccceEEeeCCCCCCCCCC-CCCcc-ccceecccc
Q 044750 410 ------KNEKDKQLLEALQPHLNVEELQICFYGGD-IFPKWLTSLTYLRELNLWFCFNCEHLPP-LGKLP-LEKLQLYIL 480 (658)
Q Consensus 410 ------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~l~~-~~~lp-L~~L~l~~~ 480 (658)
........+..+....+++.|.+.++... .+|.++..+++|+.|++++|...+.+|. +..++ |+.|+++++
T Consensus 359 ~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 438 (968)
T PLN00113 359 TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438 (968)
T ss_pred cEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC
Confidence 00000001112222333444444333221 2344444444444444444443332221 33334 444444433
Q ss_pred ccceEeCccccCCCCC---CCCCCC-CCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCC
Q 044750 481 KSVKRVGNEFLGIEES---SEDDPS-SSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPK 556 (658)
Q Consensus 481 ~~l~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~ 556 (658)
.........+.....+ ...... ...+|.. ...++|+.|++++|. .....+..+..+++|+.|++++|..
T Consensus 439 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~------l~~~~~~~~~~l~~L~~L~Ls~N~l 511 (968)
T PLN00113 439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQ------FSGAVPRKLGSLSELMQLKLSENKL 511 (968)
T ss_pred cccCccChhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCc------cCCccChhhhhhhccCEEECcCCcc
Confidence 2111111000000000 000000 0011111 134566677776662 2222345667788999999999877
Q ss_pred CCCCCccccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCCCCCCCCCccEEEEecChhH
Q 044750 557 LKALPDYLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCPLL 633 (658)
Q Consensus 557 l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l 633 (658)
...+|..+.++++|++|+|++|.....+| ..+..+++|++|++++|.....+|..+.++++|+.|++++|+..
T Consensus 512 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIP----ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred eeeCChHHcCccCCCEEECCCCcccccCC----hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 77888888889999999999998887787 47788899999999999877788988888999999999998743
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=3e-29 Score=290.97 Aligned_cols=411 Identities=19% Similarity=0.188 Sum_probs=282.7
Q ss_pred CCceEEEEEEcCCCCC-CCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccccc
Q 044750 176 GDKVRHLGLNFEGGAP-LPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPEN 254 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~ 254 (658)
...++++.+.++.+.. .| ...+++|++|++++|... ...+..+..+++|++|+++ + |.....+|..
T Consensus 117 l~~L~~L~Ls~n~l~~~~p--~~~l~~L~~L~Ls~n~~~---~~~p~~~~~l~~L~~L~L~------~--n~l~~~~p~~ 183 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIP--RGSIPNLETLDLSNNMLS---GEIPNDIGSFSSLKVLDLG------G--NVLVGKIPNS 183 (968)
T ss_pred CCCCCEEECcCCccccccC--ccccCCCCEEECcCCccc---ccCChHHhcCCCCCEEECc------c--CcccccCChh
Confidence 5678999999887753 33 246899999999999754 4557788999999999993 3 2334578999
Q ss_pred ccCCCccceeecCCcccc-ccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCC
Q 044750 255 IGKLIHLKYLNLSELCIE-RLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLR 333 (658)
Q Consensus 255 ~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 333 (658)
++++++|++|++++|.+. .+|..++++++|++|++++|.....+|..++.+++|++|++++|.....+|..++++++|+
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 999999999999999987 7899999999999999999997778999999999999999999977778899999999999
Q ss_pred ccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchh
Q 044750 334 TLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEK 413 (658)
Q Consensus 334 ~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 413 (658)
+|++..+ ...+..+..+. ++++|+.+.+.... +....+..+..+++|+.|++.++....
T Consensus 264 ~L~L~~n--~l~~~~p~~l~---~l~~L~~L~Ls~n~----l~~~~p~~~~~l~~L~~L~l~~n~~~~------------ 322 (968)
T PLN00113 264 YLFLYQN--KLSGPIPPSIF---SLQKLISLDLSDNS----LSGEIPELVIQLQNLEILHLFSNNFTG------------ 322 (968)
T ss_pred EEECcCC--eeeccCchhHh---hccCcCEEECcCCe----eccCCChhHcCCCCCcEEECCCCccCC------------
Confidence 9975432 22222233343 44555555554422 122233446788999999998876321
Q ss_pred HHHHhhhcCCCCCCceEEEeeeCCC-CCChhhhcccccceEEeeCCCCCCCCC------------------------C-C
Q 044750 414 DKQLLEALQPHLNVEELQICFYGGD-IFPKWLTSLTYLRELNLWFCFNCEHLP------------------------P-L 467 (658)
Q Consensus 414 ~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~l~------------------------~-~ 467 (658)
..+..+...++|+.|.+.++... .+|.++..+++|+.|++++|.....+| . +
T Consensus 323 --~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~ 400 (968)
T PLN00113 323 --KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400 (968)
T ss_pred --cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH
Confidence 11223344556666666665443 345556666666666666664433222 1 3
Q ss_pred CCcc-ccceeccccccceEeCccccCCCCCCC---C-CCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCc
Q 044750 468 GKLP-LEKLQLYILKSVKRVGNEFLGIEESSE---D-DPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISI 542 (658)
Q Consensus 468 ~~lp-L~~L~l~~~~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~ 542 (658)
+.++ |+.|.+.++......+..+........ . +.-.+..+..+..+++|+.|++++|.-... .+.. ..
T Consensus 401 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~------~p~~-~~ 473 (968)
T PLN00113 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG------LPDS-FG 473 (968)
T ss_pred hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee------cCcc-cc
Confidence 3344 555555544322222211111111100 0 000112333344566777777776632211 1222 24
Q ss_pred CcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCCCCCCCCCc
Q 044750 543 MPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPNYLLRTTTL 622 (658)
Q Consensus 543 ~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L 622 (658)
.++|+.|++++|.....+|..+..+++|++|++++|.....+| ..+..+++|++|++++|.....+|..+..+++|
T Consensus 474 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 549 (968)
T PLN00113 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP----DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549 (968)
T ss_pred cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC----hHHcCccCCCEEECCCCcccccCChhHhCcccC
Confidence 5788888888887667788888889999999999998887888 477889999999999998777889889999999
Q ss_pred cEEEEecChhH
Q 044750 623 QELIIHRCPLL 633 (658)
Q Consensus 623 ~~L~l~~c~~l 633 (658)
+.|++++|...
T Consensus 550 ~~L~Ls~N~l~ 560 (968)
T PLN00113 550 SQLDLSQNQLS 560 (968)
T ss_pred CEEECCCCccc
Confidence 99999999754
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=1.8e-25 Score=210.74 Aligned_cols=405 Identities=23% Similarity=0.236 Sum_probs=233.1
Q ss_pred eEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCC
Q 044750 179 VRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKL 258 (658)
Q Consensus 179 ~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l 258 (658)
...+.+.+++.........++..+.+|.+++|.. ...|..+..+..++.|+. ++ +.+..+|..++.+
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l----~~lp~aig~l~~l~~l~v------s~---n~ls~lp~~i~s~ 113 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL----SQLPAAIGELEALKSLNV------SH---NKLSELPEQIGSL 113 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchh----hhCCHHHHHHHHHHHhhc------cc---chHhhccHHHhhh
Confidence 3445555555555555666666666776666653 234555566666666666 44 5666666666666
Q ss_pred CccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccCce
Q 044750 259 IHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLEKF 338 (658)
Q Consensus 259 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 338 (658)
..|+.|+.++|.+.++|++++.+..|+.|+..+|+ +..+|.+++.+.+|..|++.+| .++..|+..-+++.|+.|+.
T Consensus 114 ~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~- 190 (565)
T KOG0472|consen 114 ISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDC- 190 (565)
T ss_pred hhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhccc-
Confidence 66777777766666666666666667666666665 6666666666666666666666 34444444444666666641
Q ss_pred eeccCCCCCccccccccccCccc--CCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHH
Q 044750 339 VVGGGVDGGSTCRLESLKNLQLL--RKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQ 416 (658)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~L~~L--~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 416 (658)
.. +..+..+..++.+.+|.-| +...|..+ ..|.+|..|+.++++.+. .+-
T Consensus 191 -~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~l-----------Pef~gcs~L~Elh~g~N~---------------i~~ 242 (565)
T KOG0472|consen 191 -NS-NLLETLPPELGGLESLELLYLRRNKIRFL-----------PEFPGCSLLKELHVGENQ---------------IEM 242 (565)
T ss_pred -ch-hhhhcCChhhcchhhhHHHHhhhcccccC-----------CCCCccHHHHHHHhcccH---------------HHh
Confidence 11 1112223333333333221 11111111 135556666666665544 222
Q ss_pred Hhh-hcCCCCCCceEEEeeeCCCCCChhhhcccccceEEeeCCCCCCCCCCCCCccccceeccccccc------------
Q 044750 417 LLE-ALQPHLNVEELQICFYGGDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLPLEKLQLYILKSV------------ 483 (658)
Q Consensus 417 ~~~-~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lpL~~L~l~~~~~l------------ 483 (658)
.+. .+...+++..|++.......+|..+..+++|++|++++|....-.+.+|.+.|++|.+.+.+-=
T Consensus 243 lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~ 322 (565)
T KOG0472|consen 243 LPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQ 322 (565)
T ss_pred hHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcccHH
Confidence 222 2334566777777777777778777777888888888776544444466666666666654411
Q ss_pred ---eEeCccccCCCC--CCCCCCCCCCCCC----cccCCCCcceeeecCCcccccc------------------------
Q 044750 484 ---KRVGNEFLGIEE--SSEDDPSSSSSSS----SVTAFPKLKSLDIGGMEELEEW------------------------ 530 (658)
Q Consensus 484 ---~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~L~~L~L~~~~~L~~~------------------------ 530 (658)
++........+. .........+.++ ........+.|++++- +++.+
T Consensus 323 ~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskNqL~ 401 (565)
T KOG0472|consen 323 EVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKNQLC 401 (565)
T ss_pred HHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccchHh
Confidence 000000000000 0000000001000 0111223333333321 11110
Q ss_pred --c------------------cccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcC----
Q 044750 531 --N------------------YRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPI---- 586 (658)
Q Consensus 531 --~------------------~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~---- 586 (658)
. ...-.+..+..+++|..|++++| .+..+|..++.+..|+.|+|+.|.. ..+|.
T Consensus 402 elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~ 479 (565)
T KOG0472|consen 402 ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRF-RMLPECLYE 479 (565)
T ss_pred hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheeccccccc-ccchHHHhh
Confidence 0 00011345567899999999987 6788999999999999999999853 33442
Q ss_pred ----------------CCccccCCCCCCCeeeccCCCCccccCCCCCCCCCccEEEEecCh
Q 044750 587 ----------------LEDRKTTDIPRLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 587 ----------------l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 631 (658)
.....+.++.+|.+|++.+|. +..+|+.+.+|++|++|++.|||
T Consensus 480 lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 480 LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHHHHHHHhccccccccChHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCc
Confidence 222346678899999999985 88999999999999999999998
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=2.1e-25 Score=221.37 Aligned_cols=361 Identities=19% Similarity=0.202 Sum_probs=189.1
Q ss_pred CceEEEEEEcCCCC--CCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccccc
Q 044750 177 DKVRHLGLNFEGGA--PLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPEN 254 (658)
Q Consensus 177 ~~~~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~ 254 (658)
+-+|.++++++++. .+|.....|.+++.|.+..... ...|..++.+.+|..|.+ .+ +.+.++-..
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L----~~vPeEL~~lqkLEHLs~------~H---N~L~~vhGE 73 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL----EQVPEELSRLQKLEHLSM------AH---NQLISVHGE 73 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh----hhChHHHHHHhhhhhhhh------hh---hhhHhhhhh
Confidence 34555555555543 2455555555555555544432 233444555555555555 33 444444444
Q ss_pred ccCCCccceeecCCcccc--ccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCc-CCCCCC
Q 044750 255 IGKLIHLKYLNLSELCIE--RLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIG-ISKLTS 331 (658)
Q Consensus 255 ~~~l~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~ 331 (658)
+..|+.||.+.++.|++. .+|..+..|..|.+|||++|. +++.|..+..-+++-.|+++.| .+..+|.. +-+++.
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTD 151 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHh
Confidence 455555555555555544 455555555555555555554 5555555555555555555555 33444433 233443
Q ss_pred CCccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCc
Q 044750 332 LRTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKN 411 (658)
Q Consensus 332 L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 411 (658)
|-.|++.. +.. +.++..+..+.+|++|.++.+.
T Consensus 152 LLfLDLS~---NrL-------------------------------e~LPPQ~RRL~~LqtL~Ls~NP------------- 184 (1255)
T KOG0444|consen 152 LLFLDLSN---NRL-------------------------------EMLPPQIRRLSMLQTLKLSNNP------------- 184 (1255)
T ss_pred Hhhhcccc---chh-------------------------------hhcCHHHHHHhhhhhhhcCCCh-------------
Confidence 33333211 111 1112223344445555554443
Q ss_pred hhHHHHhhhcCCCCCCceEEEeeeC--CCCCChhhhcccccceEEeeCCCCCCCCCCCCCcc-ccceeccccccceEeCc
Q 044750 412 EKDKQLLEALQPHLNVEELQICFYG--GDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLP-LEKLQLYILKSVKRVGN 488 (658)
Q Consensus 412 ~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lp-L~~L~l~~~~~l~~~~~ 488 (658)
.....+.-++.+..|+.|.+++.. ...+|.++..+.||..++++.|..-.....+-.++ |+.|+|++......
T Consensus 185 -L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL--- 260 (1255)
T KOG0444|consen 185 -LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITEL--- 260 (1255)
T ss_pred -hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeee---
Confidence 011112223333444444444432 23356666666666666666553221111233444 55555554321111
Q ss_pred cccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCC-CCCCCccccCC
Q 044750 489 EFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPK-LKALPDYLLQS 567 (658)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~-l~~lp~~~~~l 567 (658)
....+...+|++|+++.+ +|+.+ |..++.++.|+.|.+.+|.. .+.+|++++.+
T Consensus 261 ------------------~~~~~~W~~lEtLNlSrN-QLt~L------P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 261 ------------------NMTEGEWENLETLNLSRN-QLTVL------PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred ------------------eccHHHHhhhhhhccccc-hhccc------hHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 011234566777777765 44333 55667777777777776632 23677777777
Q ss_pred CCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCCCCCCCCCccEEEEecChhHH
Q 044750 568 TALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCPLLE 634 (658)
Q Consensus 568 ~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 634 (658)
.+|+.+..++| .++-+| ..+..|+.|+.|.++.|. +..+|+.+.-++.|+.||+.+||++-
T Consensus 316 ~~Levf~aanN-~LElVP----EglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 316 IQLEVFHAANN-KLELVP----EGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhHHHHhhcc-ccccCc----hhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCcc
Confidence 77777777765 366666 467777777777777764 56677777777777777777777664
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=7.2e-22 Score=229.20 Aligned_cols=342 Identities=20% Similarity=0.194 Sum_probs=212.9
Q ss_pred CCceEEEEEEcCCCC-------CCCccccCC-CcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccc
Q 044750 176 GDKVRHLGLNFEGGA-------PLPMSIYGL-NRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNF 247 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~-------~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~ 247 (658)
..+++.+.+..+... .+|..+..+ ++||.|.+.++.. ..+|..| .+.+|+.|++ .+ +.
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l----~~lP~~f-~~~~L~~L~L------~~---s~ 622 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL----RCMPSNF-RPENLVKLQM------QG---SK 622 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC----CCCCCcC-CccCCcEEEC------cC---cc
Confidence 445666666443211 145555554 4699999988864 4445555 5688999999 55 66
Q ss_pred cccccccccCCCccceeecCCcc-ccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcC
Q 044750 248 IREIPENIGKLIHLKYLNLSELC-IERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGI 326 (658)
Q Consensus 248 ~~~lp~~~~~l~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i 326 (658)
+..+|.++..+++|++|+|+++. ++.+| .++.+++|++|++++|..+..+|..++.+++|+.|++++|..++.+|..+
T Consensus 623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 623 LEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred ccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence 78889889999999999999876 66787 58889999999999999899999999999999999999998899999876
Q ss_pred CCCCCCCccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcc
Q 044750 327 SKLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEE 406 (658)
Q Consensus 327 ~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 406 (658)
++++|+.|.+..+. .....+.. ..+|+.+.+.+.. ...++ ..+ .+++|+.|.+..+........
T Consensus 702 -~l~sL~~L~Lsgc~--~L~~~p~~------~~nL~~L~L~~n~-i~~lP----~~~-~l~~L~~L~l~~~~~~~l~~~- 765 (1153)
T PLN03210 702 -NLKSLYRLNLSGCS--RLKSFPDI------STNISWLDLDETA-IEEFP----SNL-RLENLDELILCEMKSEKLWER- 765 (1153)
T ss_pred -CCCCCCEEeCCCCC--Cccccccc------cCCcCeeecCCCc-ccccc----ccc-cccccccccccccchhhcccc-
Confidence 68888888643221 11111111 1234444443321 11111 111 456777777654331000000
Q ss_pred cccCchhHHHHhhhcCCCCCCceEEEeeeC-CCCCChhhhcccccceEEeeCCCCCCCCCCCCCcc-ccceeccccccce
Q 044750 407 GRRKNEKDKQLLEALQPHLNVEELQICFYG-GDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLP-LEKLQLYILKSVK 484 (658)
Q Consensus 407 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lp-L~~L~l~~~~~l~ 484 (658)
...........+++|+.|.+.++. ...+|.++..+++|+.|++++|..++.+|....++ |+.|.+++|..+.
T Consensus 766 ------~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 766 ------VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLR 839 (1153)
T ss_pred ------ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccc
Confidence 000000011124567777777663 34467777777888888888877666666544555 6666666665442
Q ss_pred EeCccccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccc
Q 044750 485 RVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYL 564 (658)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~ 564 (658)
..+ ...++|+.|+|+++ .++.+ |..+..+++|+.|++.+|+.+..+|..+
T Consensus 840 ~~p-----------------------~~~~nL~~L~Ls~n-~i~~i------P~si~~l~~L~~L~L~~C~~L~~l~~~~ 889 (1153)
T PLN03210 840 TFP-----------------------DISTNISDLNLSRT-GIEEV------PWWIEKFSNLSFLDMNGCNNLQRVSLNI 889 (1153)
T ss_pred ccc-----------------------ccccccCEeECCCC-CCccC------hHHHhcCCCCCEEECCCCCCcCccCccc
Confidence 211 12345666666654 33322 3345566666666666666666666666
Q ss_pred cCCCCcceEEEccCCCCCCC
Q 044750 565 LQSTALQELRIYFCDLLEEL 584 (658)
Q Consensus 565 ~~l~~L~~L~l~~c~~l~~~ 584 (658)
..+++|+.+++++|..+..+
T Consensus 890 ~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 890 SKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccccCCCeeecCCCcccccc
Confidence 66666666666666665543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.1e-24 Score=216.19 Aligned_cols=347 Identities=22% Similarity=0.242 Sum_probs=250.2
Q ss_pred CCceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccc
Q 044750 176 GDKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENI 255 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~ 255 (658)
...++.+.+.......+|..+..+.+|..|.+..|.. ....+.++.++.||.+++ .+ .+-....+|..+
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L----~~vhGELs~Lp~LRsv~~------R~-N~LKnsGiP~di 99 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQL----ISVHGELSDLPRLRSVIV------RD-NNLKNSGIPTDI 99 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhh----HhhhhhhccchhhHHHhh------hc-cccccCCCCchh
Confidence 4467888898888888999999999999999999874 334566788999999999 33 112234689999
Q ss_pred cCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCccc-ccccCCceeecCCcccCccCcCcCCCCCCCCc
Q 044750 256 GKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGI-GKLMNMRSLLNGQTYSLKYMPIGISKLTSLRT 334 (658)
Q Consensus 256 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 334 (658)
.+|..|..|||++|.+++.|..+...+++-+|+|++|+ +.++|..+ .+|+.|-+||+++| .+..+|+.+..+.+|++
T Consensus 100 F~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred cccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhh
Confidence 99999999999999999999999999999999999988 99999765 68999999999999 78899999999999999
Q ss_pred cCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhH
Q 044750 335 LEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKD 414 (658)
Q Consensus 335 L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 414 (658)
|.+..+.-. ...+..|+.++.|.++++++... --...+.++..+.+
T Consensus 178 L~Ls~NPL~-----hfQLrQLPsmtsL~vLhms~TqR---Tl~N~Ptsld~l~N-------------------------- 223 (1255)
T KOG0444|consen 178 LKLSNNPLN-----HFQLRQLPSMTSLSVLHMSNTQR---TLDNIPTSLDDLHN-------------------------- 223 (1255)
T ss_pred hhcCCChhh-----HHHHhcCccchhhhhhhcccccc---hhhcCCCchhhhhh--------------------------
Confidence 974322111 23444555555555555443211 01111223333444
Q ss_pred HHHhhhcCCCCCCceEEEeeeCCCCCChhhhcccccceEEeeCCCCCCCCCCCCCcc-ccceeccccccceEeCccccCC
Q 044750 415 KQLLEALQPHLNVEELQICFYGGDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLP-LEKLQLYILKSVKRVGNEFLGI 493 (658)
Q Consensus 415 ~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lp-L~~L~l~~~~~l~~~~~~~~~~ 493 (658)
|..++++.+....+|..+-.+++|++|++++|...+--...+..- |++|++++.. ++
T Consensus 224 ------------L~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ--------Lt-- 281 (1255)
T KOG0444|consen 224 ------------LRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ--------LT-- 281 (1255)
T ss_pred ------------hhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch--------hc--
Confidence 444444444555567777777778888887776444222233344 6666665532 22
Q ss_pred CCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceE
Q 044750 494 EESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQEL 573 (658)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L 573 (658)
.+|..+..+++|+.|++.++ +|.- .++|..++.+.+|+.+...+| .++-+|.++..+.+|+.|
T Consensus 282 -----------~LP~avcKL~kL~kLy~n~N-kL~F----eGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 282 -----------VLPDAVCKLTKLTKLYANNN-KLTF----EGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKL 344 (1255)
T ss_pred -----------cchHHHhhhHHHHHHHhccC-cccc----cCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHh
Confidence 34555667888888888776 3332 223777888888888888876 778888888888888888
Q ss_pred EEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccC
Q 044750 574 RIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLP 613 (658)
Q Consensus 574 ~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~ 613 (658)
.++.|..+ .+| ..+.-+|-|+.|++..|+++..-|
T Consensus 345 ~L~~NrLi-TLP----eaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 345 KLDHNRLI-TLP----EAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccccccee-ech----hhhhhcCCcceeeccCCcCccCCC
Confidence 88877644 477 477778888888888888886554
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=7.6e-23 Score=201.88 Aligned_cols=359 Identities=18% Similarity=0.219 Sum_probs=166.5
Q ss_pred CCceEEEEEEcCCCCCC-CccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc-c
Q 044750 176 GDKVRHLGLNFEGGAPL-PMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP-E 253 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp-~ 253 (658)
+...+.+.+++|.+... +..|.++++|+.+.+..|.. ...|.+-....+|+.|+| .+ +.+.++. +
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L----t~IP~f~~~sghl~~L~L------~~---N~I~sv~se 143 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL----TRIPRFGHESGHLEKLDL------RH---NLISSVTSE 143 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchh----hhcccccccccceeEEee------ec---cccccccHH
Confidence 44455555655555432 23345566666666655543 233343334444666666 33 4444332 2
Q ss_pred cccCCCccceeecCCccccccch-hhhcCCCCcEeecCCCCCCCCC-CcccccccCCceeecCCcccCccCc-CcCCCCC
Q 044750 254 NIGKLIHLKYLNLSELCIERLPE-TLCELYNLRKLDIRRCPNLREL-PAGIGKLMNMRSLLNGQTYSLKYMP-IGISKLT 330 (658)
Q Consensus 254 ~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~ 330 (658)
++.-++.||.|||+.|.|+++|. .+..-.++++|+|++|+ +..+ ...|..+.+|..|.++.| +++.+| ..|++++
T Consensus 144 ~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~ 221 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLP 221 (873)
T ss_pred HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccC-cccccCHHHhhhcc
Confidence 34445556666666666655553 33444556666666655 3332 233455555666666655 333333 2344466
Q ss_pred CCCccCceeeccCCCCCccccccccccCcccCC--ceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccc
Q 044750 331 SLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRK--CGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGR 408 (658)
Q Consensus 331 ~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~--l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 408 (658)
+|+.|++..+... ......+..|.+|++|+. .+|+.+ ....|..+.++++|++..+..
T Consensus 222 ~L~~LdLnrN~ir--ive~ltFqgL~Sl~nlklqrN~I~kL---------~DG~Fy~l~kme~l~L~~N~l--------- 281 (873)
T KOG4194|consen 222 KLESLDLNRNRIR--IVEGLTFQGLPSLQNLKLQRNDISKL---------DDGAFYGLEKMEHLNLETNRL--------- 281 (873)
T ss_pred hhhhhhcccccee--eehhhhhcCchhhhhhhhhhcCcccc---------cCcceeeecccceeecccchh---------
Confidence 6666553222111 111223444444444432 222211 112345556666666655541
Q ss_pred cCchhHHHHhhhcCCCCCCceEEEeeeCCCCC-ChhhhcccccceEEeeCCCCCCCCCCCCCccccceeccccccceEeC
Q 044750 409 RKNEKDKQLLEALQPHLNVEELQICFYGGDIF-PKWLTSLTYLRELNLWFCFNCEHLPPLGKLPLEKLQLYILKSVKRVG 487 (658)
Q Consensus 409 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lpL~~L~l~~~~~l~~~~ 487 (658)
....-.++.....|+.|+++.+.+..+ ++.+..+++|+.|++++|...+ ++
T Consensus 282 -----~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~-l~---------------------- 333 (873)
T KOG4194|consen 282 -----QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR-LD---------------------- 333 (873)
T ss_pred -----hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc-CC----------------------
Confidence 111112233334444444444433332 2223344455555555443211 11
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCC---Cccc
Q 044750 488 NEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKAL---PDYL 564 (658)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l---p~~~ 564 (658)
+.++..+..|+.|.|+.+ .+.. .....+..+.+|++|+|+.|...-.+ ...+
T Consensus 334 -------------------~~sf~~L~~Le~LnLs~N-si~~-----l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 334 -------------------EGSFRVLSQLEELNLSHN-SIDH-----LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF 388 (873)
T ss_pred -------------------hhHHHHHHHhhhhccccc-chHH-----HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence 111234555666666554 1221 11234445666666666655321111 1123
Q ss_pred cCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCCCCCCCCCccEEEE
Q 044750 565 LQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPNYLLRTTTLQELII 627 (658)
Q Consensus 565 ~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 627 (658)
..+++|+.|.+.+|+ ++.+|. ..+..+++|++|++.+|+.-..-|..+.++ .|++|.+
T Consensus 389 ~gl~~LrkL~l~gNq-lk~I~k---rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQ-LKSIPK---RAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred ccchhhhheeecCce-eeecch---hhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 346666666666654 445552 455666666666666665444445555555 5555554
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=6.7e-22 Score=195.30 Aligned_cols=344 Identities=20% Similarity=0.182 Sum_probs=228.0
Q ss_pred CCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccc-hh
Q 044750 199 LNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLP-ET 277 (658)
Q Consensus 199 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~ 277 (658)
.+.-++|++++|..+ ..-..+|.++++|+.+.+ .. +.+..+|.......+|+.|+|.+|.|.++. ++
T Consensus 77 p~~t~~LdlsnNkl~---~id~~~f~nl~nLq~v~l------~~---N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~ 144 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLS---HIDFEFFYNLPNLQEVNL------NK---NELTRIPRFGHESGHLEKLDLRHNLISSVTSEE 144 (873)
T ss_pred ccceeeeeccccccc---cCcHHHHhcCCcceeeee------cc---chhhhcccccccccceeEEeeeccccccccHHH
Confidence 356788999999865 444677899999999999 55 889999998888889999999999999665 47
Q ss_pred hhcCCCCcEeecCCCCCCCCCCc-ccccccCCceeecCCcccCccCcCcCCCCCCCCccCceeeccCCCCCccccccccc
Q 044750 278 LCELYNLRKLDIRRCPNLRELPA-GIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLEKFVVGGGVDGGSTCRLESLK 356 (658)
Q Consensus 278 i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~ 356 (658)
+..++-|+.|||+.|. +.++|. ++..=.++++|++++|.+...--..|..+.+|-+|.+..+ ....-....+.+|+
T Consensus 145 L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN--rittLp~r~Fk~L~ 221 (873)
T KOG4194|consen 145 LSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN--RITTLPQRSFKRLP 221 (873)
T ss_pred HHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC--cccccCHHHhhhcc
Confidence 8889999999999987 777764 4555578999999999554444455777888887764322 22122233444455
Q ss_pred cCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHHHhhhcCCCCCCceEEEeeeC
Q 044750 357 NLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLNVEELQICFYG 436 (658)
Q Consensus 357 ~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 436 (658)
+|+.|.. .. +.........|.++.+|+.|.+..+.
T Consensus 222 ~L~~LdL---nr----N~irive~ltFqgL~Sl~nlklqrN~-------------------------------------- 256 (873)
T KOG4194|consen 222 KLESLDL---NR----NRIRIVEGLTFQGLPSLQNLKLQRND-------------------------------------- 256 (873)
T ss_pred hhhhhhc---cc----cceeeehhhhhcCchhhhhhhhhhcC--------------------------------------
Confidence 5544432 00 00111111234555555555555444
Q ss_pred CCCCC-hhhhcccccceEEeeCCCCCC-CCCCCCCcc-ccceeccccccceEeCccccCCCCCCCCCCCCCCCCCcccCC
Q 044750 437 GDIFP-KWLTSLTYLRELNLWFCFNCE-HLPPLGKLP-LEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVTAF 513 (658)
Q Consensus 437 ~~~~p-~~~~~l~~L~~L~l~~~~~~~-~l~~~~~lp-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (658)
+..+. ..+..+.++++|+++.|+... .-.++-.+. |+.|+++....-... +.++..+
T Consensus 257 I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih--------------------~d~Wsft 316 (873)
T KOG4194|consen 257 ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH--------------------IDSWSFT 316 (873)
T ss_pred cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee--------------------cchhhhc
Confidence 22221 122345556666665554332 112233334 555555443211111 1235678
Q ss_pred CCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCcc-ccCCCCcceEEEccCCCCCCCcCCCcccc
Q 044750 514 PKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDY-LLQSTALQELRIYFCDLLEELPILEDRKT 592 (658)
Q Consensus 514 ~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~~p~l~~~~~ 592 (658)
++|+.|+|+++ .++.+. +.++..+..|++|.|+.| .+..+... +..+.+|++|++++|...-.+- -....+
T Consensus 317 qkL~~LdLs~N-~i~~l~-----~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IE-Daa~~f 388 (873)
T KOG4194|consen 317 QKLKELDLSSN-RITRLD-----EGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIE-DAAVAF 388 (873)
T ss_pred ccceeEecccc-ccccCC-----hhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEe-cchhhh
Confidence 99999999997 444433 466778999999999998 55555443 5578999999999997533222 122456
Q ss_pred CCCCCCCeeeccCCCCccccCC-CCCCCCCccEEEEecCh
Q 044750 593 TDIPRLSSLEIGYCPKLKVLPN-YLLRTTTLQELIIHRCP 631 (658)
Q Consensus 593 ~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~ 631 (658)
..+++|+.|.+.+|+ ++.+|. .+.+++.|++|++.+|+
T Consensus 389 ~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred ccchhhhheeecCce-eeecchhhhccCcccceecCCCCc
Confidence 779999999999995 888875 78899999999999997
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=1.5e-22 Score=210.52 Aligned_cols=135 Identities=22% Similarity=0.249 Sum_probs=80.7
Q ss_pred eEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCC
Q 044750 179 VRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKL 258 (658)
Q Consensus 179 ~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l 258 (658)
+.++.++++.+..+|..+...++|+.|.++.|.+ ...|....++++|++|.| .. +.+..+|.++..+
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i----~~vp~s~~~~~~l~~lnL------~~---n~l~~lP~~~~~l 113 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI----RSVPSSCSNMRNLQYLNL------KN---NRLQSLPASISEL 113 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhH----hhCchhhhhhhcchhhee------cc---chhhcCchhHHhh
Confidence 5566666666666666666666666666666654 223445566666666666 33 5666666666666
Q ss_pred CccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCC
Q 044750 259 IHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTS 331 (658)
Q Consensus 259 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~ 331 (658)
++|+||++++|.+..+|..+..+..+..++.++|..+..++... .+++++..+.....++.++..++.
T Consensus 114 knl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~~i~~l~~ 181 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLIDIYNLTH 181 (1081)
T ss_pred hcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhcchhhhhe
Confidence 66666666666666666666666666666666663333333321 555555555445555555555555
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=1.4e-22 Score=191.36 Aligned_cols=378 Identities=22% Similarity=0.228 Sum_probs=264.0
Q ss_pred CceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccccccc
Q 044750 177 DKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIG 256 (658)
Q Consensus 177 ~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~ 256 (658)
..+..+.++++.....|+++.....+..++++.|.. ..+|.....+..|+.|+. +. +....+|++++
T Consensus 68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~l----s~lp~~i~s~~~l~~l~~------s~---n~~~el~~~i~ 134 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKL----SELPEQIGSLISLVKLDC------SS---NELKELPDSIG 134 (565)
T ss_pred cceeEEEeccchhhhCCHHHHHHHHHHHhhcccchH----hhccHHHhhhhhhhhhhc------cc---cceeecCchHH
Confidence 345667777787777899999999999999999875 445777788889999999 65 78889999999
Q ss_pred CCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccC
Q 044750 257 KLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLE 336 (658)
Q Consensus 257 ~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 336 (658)
.+..|+.|+..+|++..+|+.++++.+|..|++.+|. +..+|+...+|+.|++||...| .++.+|++++.|.+|..|+
T Consensus 135 ~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLY 212 (565)
T ss_pred HHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHH
Confidence 9999999999999999999999999999999999987 7888887777999999998887 7888999999999998886
Q ss_pred ceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHH
Q 044750 337 KFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQ 416 (658)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 416 (658)
+...... .+.+++....|..+++.. +............+.++..|+++.+. ...
T Consensus 213 L~~Nki~-------~lPef~gcs~L~Elh~g~----N~i~~lpae~~~~L~~l~vLDLRdNk---------------lke 266 (565)
T KOG0472|consen 213 LRRNKIR-------FLPEFPGCSLLKELHVGE----NQIEMLPAEHLKHLNSLLVLDLRDNK---------------LKE 266 (565)
T ss_pred hhhcccc-------cCCCCCccHHHHHHHhcc----cHHHhhHHHHhcccccceeeeccccc---------------ccc
Confidence 5433322 222333333344444322 22222222334578888999998877 566
Q ss_pred HhhhcCCCCCCceEEEeeeCCCCCChhhhcccccceEEeeCCCCCC---CCCCCCC------------------------
Q 044750 417 LLEALQPHLNVEELQICFYGGDIFPKWLTSLTYLRELNLWFCFNCE---HLPPLGK------------------------ 469 (658)
Q Consensus 417 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~---~l~~~~~------------------------ 469 (658)
++..+....++++|++++.....+|..++++ .|+.|.+.+|..-+ ++-.-|.
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 6777777788999999999999999999988 89999988885311 1100011
Q ss_pred ---------------cc-ccceeccccccceEeCccccCCCC---C---------------------------CCCCCCC
Q 044750 470 ---------------LP-LEKLQLYILKSVKRVGNEFLGIEE---S---------------------------SEDDPSS 503 (658)
Q Consensus 470 ---------------lp-L~~L~l~~~~~l~~~~~~~~~~~~---~---------------------------~~~~~~~ 503 (658)
+. .+.|.++.. .++.++...+.... . ...+-..
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc
Confidence 11 222222211 11111111111000 0 0000002
Q ss_pred CCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCC----------------------CCCCCC
Q 044750 504 SSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCP----------------------KLKALP 561 (658)
Q Consensus 504 ~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~----------------------~l~~lp 561 (658)
+-+|..+..+++|..|+++++ -|.++ |..++.+-.|+.|+++.|. +++.++
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN-~Ln~L------P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd 497 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNN-LLNDL------PEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVD 497 (565)
T ss_pred ccchHHHHhhhcceeeecccc-hhhhc------chhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccC
Confidence 334555678899999999986 33333 5566777788888888763 223333
Q ss_pred c-cccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCc
Q 044750 562 D-YLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKL 609 (658)
Q Consensus 562 ~-~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l 609 (658)
. ++..+.+|..|++.+|+. ..+| -.+++|.+|++|++.+|+.-
T Consensus 498 ~~~l~nm~nL~tLDL~nNdl-q~IP----p~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 498 PSGLKNMRNLTTLDLQNNDL-QQIP----PILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hHHhhhhhhcceeccCCCch-hhCC----hhhccccceeEEEecCCccC
Confidence 2 377889999999999875 4566 38999999999999999853
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=1.9e-20 Score=195.08 Aligned_cols=199 Identities=21% Similarity=0.211 Sum_probs=132.2
Q ss_pred CCCCCceEEEeeeCCCCCChhhhcccccceEEeeCCCCCC----------------------CCC-CCCCcc-ccceecc
Q 044750 423 PHLNVEELQICFYGGDIFPKWLTSLTYLRELNLWFCFNCE----------------------HLP-PLGKLP-LEKLQLY 478 (658)
Q Consensus 423 ~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~----------------------~l~-~~~~lp-L~~L~l~ 478 (658)
.+.+++.+.++......+|+|+..+.+|+.|....|.... .+| ..+.+. |++|+|.
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 3457777777777777778888777777777777664321 111 123344 6666666
Q ss_pred ccccceEeCccccCCCC-C---CCCCCCCCCCCC-cccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeC
Q 044750 479 ILKSVKRVGNEFLGIEE-S---SEDDPSSSSSSS-SVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRG 553 (658)
Q Consensus 479 ~~~~l~~~~~~~~~~~~-~---~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~ 553 (658)
.+.--....+.+..... + .......+..|. .-..++.|+.|++.++ .|++-.+ +.+.+|++|+.|+|++
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~-----p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN-HLTDSCF-----PVLVNFKHLKVLHLSY 392 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-cccccch-----hhhccccceeeeeecc
Confidence 54322222222211110 0 000011112221 1235678888988887 5555443 4567899999999999
Q ss_pred CCCCCCCCcc-ccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCCCCCCCCCccEEEEecChh
Q 044750 554 CPKLKALPDY-LLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCPL 632 (658)
Q Consensus 554 c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~ 632 (658)
| .++++|.. +.++..|++|++++|. ++.+| ..+..|+.|++|...+|. +..+| .+..+++|+.+|++.|.
T Consensus 393 N-rL~~fpas~~~kle~LeeL~LSGNk-L~~Lp----~tva~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~- 463 (1081)
T KOG0618|consen 393 N-RLNSFPASKLRKLEELEELNLSGNK-LTTLP----DTVANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNN- 463 (1081)
T ss_pred c-ccccCCHHHHhchHHhHHHhcccch-hhhhh----HHHHhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccch-
Confidence 8 78888875 6689999999999996 67788 588999999999999995 77888 57888999999998664
Q ss_pred HHHh
Q 044750 633 LENR 636 (658)
Q Consensus 633 l~~~ 636 (658)
|...
T Consensus 464 L~~~ 467 (1081)
T KOG0618|consen 464 LSEV 467 (1081)
T ss_pred hhhh
Confidence 4433
No 14
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.63 E-value=4.4e-17 Score=161.79 Aligned_cols=101 Identities=28% Similarity=0.624 Sum_probs=85.1
Q ss_pred hhhHHHHHHhhCC-HHHHHHHHhhhcCCCCHHHHHHHHhcccccccc---ccCcchHHHHhhccCCCCCCchhhHHhhhc
Q 044750 3 HAIVSSLLDQLKS-IAQDQVIGNLLRSKCTVKEWQRILESEMWKVEE---IRKGLLAPLLLSYNDLPSNSMVKQCFSYCA 78 (658)
Q Consensus 3 ~~~~~~i~~~c~g-Plai~~ig~~L~~~~~~~~W~~~~~~~~~~~~~---~~~~i~~~L~~sY~~L~~~~~~k~cFl~~~ 78 (658)
.+++++|+++||| ||||+++|++|+.+.++.+|++++++..+...+ ....++.++.+||+.||+ ++|.||+|||
T Consensus 182 ~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~--~~~~~f~~L~ 259 (287)
T PF00931_consen 182 EDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPD--ELRRCFLYLS 259 (287)
T ss_dssp CTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT--CCHHHHHHGG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCc--cHHHHHhhCc
Confidence 5789999999999 999999999997766789999998765544422 235689999999999999 8999999999
Q ss_pred CCCCCceeCHHHHHHHHHHcCCcCCCc
Q 044750 79 VFPKDHYMHKKELIDMWMAQGYLNAEE 105 (658)
Q Consensus 79 ~fp~~~~i~~~~Li~~w~~~g~~~~~~ 105 (658)
+||+++.|+++.|+++|++|||+..++
T Consensus 260 ~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 260 IFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp GSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred CCCCCceECHHHHHHHHHHCCCCcccC
Confidence 999999999999999999999997653
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=3.1e-14 Score=153.76 Aligned_cols=261 Identities=24% Similarity=0.247 Sum_probs=142.0
Q ss_pred CcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccchhhh
Q 044750 200 NRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPETLC 279 (658)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~ 279 (658)
..-..|+++.+... .+|..+. ++|+.|++ .+ +.++.+|.. +++|++|++++|.++.+|..
T Consensus 201 ~~~~~LdLs~~~Lt----sLP~~l~--~~L~~L~L------~~---N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l-- 260 (788)
T PRK15387 201 NGNAVLNVGESGLT----TLPDCLP--AHITTLVI------PD---NNLTSLPAL---PPELRTLEVSGNQLTSLPVL-- 260 (788)
T ss_pred CCCcEEEcCCCCCC----cCCcchh--cCCCEEEc------cC---CcCCCCCCC---CCCCcEEEecCCccCcccCc--
Confidence 34556777776542 2344332 36777877 44 566667642 46788888888888877743
Q ss_pred cCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccCceeeccCCCCCccccccccccCc
Q 044750 280 ELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQ 359 (658)
Q Consensus 280 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~ 359 (658)
..+|+.|++++|. +..+|.. .++|+.|++++| .+..+|.. .++|+.|++.. +.. ..++.
T Consensus 261 -p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~--N~L--------~~Lp~-- 319 (788)
T PRK15387 261 -PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSD--NQL--------ASLPA-- 319 (788)
T ss_pred -ccccceeeccCCc-hhhhhhc---hhhcCEEECcCC-cccccccc---ccccceeECCC--Ccc--------ccCCC--
Confidence 3577788888776 6666653 245777777777 44555542 24455553211 100 00000
Q ss_pred ccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHHHhhhcCCCCCCceEEEeeeCCCC
Q 044750 360 LLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLNVEELQICFYGGDI 439 (658)
Q Consensus 360 ~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 439 (658)
...+|+.|.+..|. ...
T Consensus 320 -------------------------lp~~L~~L~Ls~N~--------------------------------------L~~ 336 (788)
T PRK15387 320 -------------------------LPSELCKLWAYNNQ--------------------------------------LTS 336 (788)
T ss_pred -------------------------CcccccccccccCc--------------------------------------ccc
Confidence 00112233333222 222
Q ss_pred CChhhhcccccceEEeeCCCCCCCCCCCCCcc-ccceeccccccceEeCccccCCCCCCCCCCCCCCCCCcccCCCCcce
Q 044750 440 FPKWLTSLTYLRELNLWFCFNCEHLPPLGKLP-LEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKS 518 (658)
Q Consensus 440 ~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lp-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 518 (658)
+|.. ..+|+.|++++|... .+|.. .+ |+.|.+.++. +.. +|. ..++|+.
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls-~LP~l--p~~L~~L~Ls~N~--------L~~-------------LP~---l~~~L~~ 386 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLA-SLPTL--PSELYKLWAYNNR--------LTS-------------LPA---LPSGLKE 386 (788)
T ss_pred cccc---ccccceEecCCCccC-CCCCC--Ccccceehhhccc--------ccc-------------Ccc---cccccce
Confidence 2321 135666666666432 23321 11 4444443321 111 111 2246788
Q ss_pred eeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCccccCCCCCC
Q 044750 519 LDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRL 598 (658)
Q Consensus 519 L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L 598 (658)
|+++++ .++.+. . .+++|+.|++++| .+..+|.. ..+|+.|++++|. ++.+| ..+..+++|
T Consensus 387 LdLs~N-~Lt~LP------~---l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~Nq-Lt~LP----~sl~~L~~L 447 (788)
T PRK15387 387 LIVSGN-RLTSLP------V---LPSELKELMVSGN-RLTSLPML---PSGLLSLSVYRNQ-LTRLP----ESLIHLSSE 447 (788)
T ss_pred EEecCC-cccCCC------C---cccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccCc-ccccC----hHHhhccCC
Confidence 888776 344322 1 2467888888887 46667754 3467788888876 45677 367778888
Q ss_pred CeeeccCCCCccccC
Q 044750 599 SSLEIGYCPKLKVLP 613 (658)
Q Consensus 599 ~~L~l~~c~~l~~l~ 613 (658)
+.|++++|+.-...+
T Consensus 448 ~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 448 TTVNLEGNPLSERTL 462 (788)
T ss_pred CeEECCCCCCCchHH
Confidence 888888887544433
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.52 E-value=9.2e-15 Score=161.41 Aligned_cols=154 Identities=28% Similarity=0.365 Sum_probs=115.1
Q ss_pred cCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccccc-ccCCCccceeecCCcc-cccc
Q 044750 197 YGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPEN-IGKLIHLKYLNLSELC-IERL 274 (658)
Q Consensus 197 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~-i~~l 274 (658)
......|...+.++.... .+. -..++.|++|-+.++.. .+..++.. |..++.|++|||++|. +..+
T Consensus 520 ~~~~~~rr~s~~~~~~~~----~~~-~~~~~~L~tLll~~n~~-------~l~~is~~ff~~m~~LrVLDLs~~~~l~~L 587 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEH----IAG-SSENPKLRTLLLQRNSD-------WLLEISGEFFRSLPLLRVLDLSGNSSLSKL 587 (889)
T ss_pred cchhheeEEEEeccchhh----ccC-CCCCCccceEEEeecch-------hhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence 355778888888876421 112 23445799999932110 24555544 7789999999999876 7799
Q ss_pred chhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccCceeeccCCCCCccccccc
Q 044750 275 PETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLEKFVVGGGVDGGSTCRLES 354 (658)
Q Consensus 275 p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~ 354 (658)
|.+|++|-+||+|+++++. +..+|.++++|.+|.+|++..+.....+|.....|++|++|.++.... ......+.+
T Consensus 588 P~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~---~~~~~~l~e 663 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL---SNDKLLLKE 663 (889)
T ss_pred ChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc---ccchhhHHh
Confidence 9999999999999999988 899999999999999999999988887777777799999998765541 112345556
Q ss_pred cccCcccCCcee
Q 044750 355 LKNLQLLRKCGI 366 (658)
Q Consensus 355 l~~L~~L~~l~i 366 (658)
+.+|++|+.+.+
T Consensus 664 l~~Le~L~~ls~ 675 (889)
T KOG4658|consen 664 LENLEHLENLSI 675 (889)
T ss_pred hhcccchhhhee
Confidence 666666666555
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=9.5e-16 Score=128.53 Aligned_cols=135 Identities=29% Similarity=0.349 Sum_probs=67.9
Q ss_pred EEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCC
Q 044750 180 RHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLI 259 (658)
Q Consensus 180 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~ 259 (658)
+.+.+.++.++.+|..+..+++||.|.+.-|+. ...|..|+.++.|.+||| ++ .|-.-..+|..|..|.
T Consensus 59 evln~~nnqie~lp~~issl~klr~lnvgmnrl----~~lprgfgs~p~levldl------ty-nnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 59 EVLNLSNNQIEELPTSISSLPKLRILNVGMNRL----NILPRGFGSFPALEVLDL------TY-NNLNENSLPGNFFYMT 127 (264)
T ss_pred hhhhcccchhhhcChhhhhchhhhheecchhhh----hcCccccCCCchhhhhhc------cc-cccccccCCcchhHHH
Confidence 344444555555555555555555555555443 233445555555555555 22 0111233455555555
Q ss_pred ccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCC
Q 044750 260 HLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGIS 327 (658)
Q Consensus 260 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 327 (658)
.|+.|.|+.|.++.+|..+++|++||.|.+++|. +-++|.+++.+++|+.|++.+| ++..+|++++
T Consensus 128 tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgn-rl~vlppel~ 193 (264)
T KOG0617|consen 128 TLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGN-RLTVLPPELA 193 (264)
T ss_pred HHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccc-eeeecChhhh
Confidence 5555555555555555555555555555555554 4445555555555555555555 4444554443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=4.6e-13 Score=145.78 Aligned_cols=72 Identities=21% Similarity=0.247 Sum_probs=41.6
Q ss_pred cccccccccccCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCc
Q 044750 246 NFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIG 325 (658)
Q Consensus 246 ~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~ 325 (658)
..+..+|..+. ++|+.|++++|.++.+|..+. .+|++|++++|. +..+|..+. .+|+.|++++| .+..+|..
T Consensus 188 ~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~ 259 (754)
T PRK15370 188 LGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSIN-RITELPER 259 (754)
T ss_pred CCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCC-ccCcCChh
Confidence 44555555442 356666777666666665543 466777776665 556665443 35666666666 33344543
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=8.4e-15 Score=122.90 Aligned_cols=147 Identities=27% Similarity=0.362 Sum_probs=133.5
Q ss_pred CCceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccc
Q 044750 176 GDKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENI 255 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~ 255 (658)
...++++.++++.+..+|+.+..+.+|+.|.+++|.+ ..+|..++.+++||.|++ .- +.+..+|.+|
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi----e~lp~~issl~klr~lnv------gm---nrl~~lprgf 98 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI----EELPTSISSLPKLRILNV------GM---NRLNILPRGF 98 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh----hhcChhhhhchhhhheec------ch---hhhhcCcccc
Confidence 4578899999999988999999999999999999975 566888999999999999 44 7788899999
Q ss_pred cCCCccceeecCCcccc--ccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCC
Q 044750 256 GKLIHLKYLNLSELCIE--RLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLR 333 (658)
Q Consensus 256 ~~l~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 333 (658)
+.++-|++|||.+|++. .+|..|..++.|+.|.|++|. .+.+|.+++++++|+.|.++.| .+-.+|.+++.++.|+
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lr 176 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLR 176 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHH
Confidence 99999999999999987 899999999999999999998 8999999999999999999999 4556899999999999
Q ss_pred ccCc
Q 044750 334 TLEK 337 (658)
Q Consensus 334 ~L~~ 337 (658)
+|.+
T Consensus 177 elhi 180 (264)
T KOG0617|consen 177 ELHI 180 (264)
T ss_pred HHhc
Confidence 9963
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=7.7e-12 Score=135.48 Aligned_cols=117 Identities=26% Similarity=0.236 Sum_probs=89.0
Q ss_pred eEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCC
Q 044750 179 VRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKL 258 (658)
Q Consensus 179 ~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l 258 (658)
-..+.+..+.+..+|..+. ++|+.|.+.+|.+. .+|. .+++|++|++ ++ +.+..+|.. .
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt----~LP~---lp~~Lk~LdL------s~---N~LtsLP~l---p 261 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT----SLPA---LPPELRTLEV------SG---NQLTSLPVL---P 261 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC----CCCC---CCCCCcEEEe------cC---CccCcccCc---c
Confidence 4567778888777787664 48999999998753 2332 3578999999 55 677778753 4
Q ss_pred CccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcC
Q 044750 259 IHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPI 324 (658)
Q Consensus 259 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~ 324 (658)
++|+.|++++|.++.+|.. ..+|+.|++++|. +..+|.. +++|+.|++++| .+..+|.
T Consensus 262 ~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~ 319 (788)
T PRK15387 262 PGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPA 319 (788)
T ss_pred cccceeeccCCchhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCC-ccccCCC
Confidence 6899999999999988863 3678899999987 7788863 478999999998 5555665
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=1.9e-12 Score=141.02 Aligned_cols=81 Identities=20% Similarity=0.351 Sum_probs=44.4
Q ss_pred cccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccC
Q 044750 228 CLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMN 307 (658)
Q Consensus 228 ~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~ 307 (658)
.|+.|++ ++ +.+..+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++|. +..+|..+. .+
T Consensus 200 ~L~~L~L------s~---N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~ 263 (754)
T PRK15370 200 QITTLIL------DN---NELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERLP--SA 263 (754)
T ss_pred CCcEEEe------cC---CCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhHh--CC
Confidence 4666666 33 44555555443 356666666666666665443 356666666665 445555443 35
Q ss_pred CceeecCCcccCccCcCc
Q 044750 308 MRSLLNGQTYSLKYMPIG 325 (658)
Q Consensus 308 L~~L~l~~~~~~~~~p~~ 325 (658)
|+.|++++| .+..+|..
T Consensus 264 L~~L~Ls~N-~L~~LP~~ 280 (754)
T PRK15370 264 LQSLDLFHN-KISCLPEN 280 (754)
T ss_pred CCEEECcCC-ccCccccc
Confidence 666666655 33444543
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.35 E-value=7.2e-14 Score=132.86 Aligned_cols=132 Identities=24% Similarity=0.307 Sum_probs=107.3
Q ss_pred cCCCceEEEEEEcCCCCCCCc-cccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc
Q 044750 174 SFGDKVRHLGLNFEGGAPLPM-SIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP 252 (658)
Q Consensus 174 ~~~~~~~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp 252 (658)
..++....|.+..|.+..+|+ +|..+++||.|+++.|.+. .+-|+.|.+++.|-.|-+ -.++.++.+|
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is---~I~p~AF~GL~~l~~Lvl--------yg~NkI~~l~ 132 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS---FIAPDAFKGLASLLSLVL--------YGNNKITDLP 132 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchh---hcChHhhhhhHhhhHHHh--------hcCCchhhhh
Confidence 347788899999999988776 4789999999999999876 455788999998877777 2237888888
Q ss_pred cc-ccCCCccceeecCCccccccc-hhhhcCCCCcEeecCCCCCCCCCCc-ccccccCCceeecCCcc
Q 044750 253 EN-IGKLIHLKYLNLSELCIERLP-ETLCELYNLRKLDIRRCPNLRELPA-GIGKLMNMRSLLNGQTY 317 (658)
Q Consensus 253 ~~-~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~ 317 (658)
+. |++|..|+-|.+.-|.+..++ ..+..|++|..|.+.+|. +..++. ++..+..++++.+..+.
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 65 788999999999999988554 577889999999999987 777776 67888889998888775
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.16 E-value=1e-12 Score=125.06 Aligned_cols=88 Identities=18% Similarity=0.149 Sum_probs=49.0
Q ss_pred cCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCCCCCCC
Q 044750 540 ISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPNYLLRT 619 (658)
Q Consensus 540 ~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l 619 (658)
+..+|+|++|++++|.....-+..+..+..+++|.+..|.. +.+. ...+.++..|++|++.+|+.....|..+..+
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l-~~v~---~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL-EFVS---SGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchH-HHHH---HHhhhccccceeeeecCCeeEEEeccccccc
Confidence 45566666666666532222244455666666666666642 2221 1344556666666666665444455566666
Q ss_pred CCccEEEEecCh
Q 044750 620 TTLQELIIHRCP 631 (658)
Q Consensus 620 ~~L~~L~l~~c~ 631 (658)
.+|.+|.+-.||
T Consensus 346 ~~l~~l~l~~Np 357 (498)
T KOG4237|consen 346 FSLSTLNLLSNP 357 (498)
T ss_pred ceeeeeehccCc
Confidence 666666665554
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.14 E-value=2.2e-12 Score=130.42 Aligned_cols=66 Identities=20% Similarity=0.124 Sum_probs=32.2
Q ss_pred ccccccCCCccceeecCCccccc-------cchhhhcCCCCcEeecCCCCCCCCCCcccccccC---CceeecCCc
Q 044750 251 IPENIGKLIHLKYLNLSELCIER-------LPETLCELYNLRKLDIRRCPNLRELPAGIGKLMN---MRSLLNGQT 316 (658)
Q Consensus 251 lp~~~~~l~~L~~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~---L~~L~l~~~ 316 (658)
++..+...++|++|+++++.+.. ++..+..+++|+.|++++|......+..+..+.+ |++|++++|
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCC
Confidence 44444455555666655554431 2234445556666666555533333333433333 555555554
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.10 E-value=8.5e-12 Score=126.19 Aligned_cols=64 Identities=22% Similarity=0.205 Sum_probs=40.5
Q ss_pred ccccCCCccceeecCCcccc-----ccchhhhcCCCCcEeecCCCCCC------CCCCcccccccCCceeecCCc
Q 044750 253 ENIGKLIHLKYLNLSELCIE-----RLPETLCELYNLRKLDIRRCPNL------RELPAGIGKLMNMRSLLNGQT 316 (658)
Q Consensus 253 ~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~------~~lp~~i~~L~~L~~L~l~~~ 316 (658)
..+..+.+|++|+++++.++ .++..+...++|++|+++++... ..++..+..+++|+.|++++|
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 91 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN 91 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence 33455666888888888763 45656667777888888776522 112334555667777777666
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.99 E-value=2.2e-11 Score=117.24 Aligned_cols=134 Identities=18% Similarity=0.316 Sum_probs=76.2
Q ss_pred CCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCC--CCCccccCCCCcceEEEccCCCCCCCc--CC
Q 044750 512 AFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLK--ALPDYLLQSTALQELRIYFCDLLEELP--IL 587 (658)
Q Consensus 512 ~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~--~lp~~~~~l~~L~~L~l~~c~~l~~~p--~l 587 (658)
.+++|+.|.++.|.++.+... .....+.+.|+.+++.+|.... ++..--.+++.|+.|.++.|..+++.- .+
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~f----t~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGF----TMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred CCCceEEEeccccchhhhhhh----hhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 556677777777666555443 2222356677777777765433 232333456777777777776655420 00
Q ss_pred CccccCCCCCCCeeeccCCCCccc-cCCCCCCCCCccEEEEecChhHHHhhcCCCCCCcccccCcCceEe
Q 044750 588 EDRKTTDIPRLSSLEIGYCPKLKV-LPNYLLRTTTLQELIIHRCPLLENRYREGEGEDWHKISHIPYIES 656 (658)
Q Consensus 588 ~~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~ 656 (658)
. ..-.....|+.+.+++||.++. .-+.+..++.|+.+++.+|..+.+-.... -..|.|+|++
T Consensus 394 ~-~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~------~~~~lp~i~v 456 (483)
T KOG4341|consen 394 S-SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR------FATHLPNIKV 456 (483)
T ss_pred h-hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH------HHhhCcccee
Confidence 0 0112334677777777776654 23445667777778888877766554332 3456666654
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.5e-09 Score=102.12 Aligned_cols=14 Identities=36% Similarity=0.202 Sum_probs=7.2
Q ss_pred cccccceEEeeCCC
Q 044750 446 SLTYLRELNLWFCF 459 (658)
Q Consensus 446 ~l~~L~~L~l~~~~ 459 (658)
.+++|+.|+++.|.
T Consensus 170 qLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 170 QLPSLENLNLSSNR 183 (505)
T ss_pred hcccchhccccccc
Confidence 45555555555553
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=1.8e-08 Score=89.28 Aligned_cols=127 Identities=27% Similarity=0.251 Sum_probs=50.1
Q ss_pred CCCcceEEEeecCCCCccccccccccc-CCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccch
Q 044750 198 GLNRLRTLLIYDKGPSLRSSILPGLFS-KLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPE 276 (658)
Q Consensus 198 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~ 276 (658)
+..+++.|.+.+|.+.. . ..+. .+.+|++|++ ++ +.++.++ .+..+++|+.|++++|.|+.++.
T Consensus 17 n~~~~~~L~L~~n~I~~----I-e~L~~~l~~L~~L~L------s~---N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST----I-ENLGATLDKLEVLDL------SN---NQITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ------------------------S--TT-TT--EEE-------TT---S--S--T-T----TT--EEE--SS---S-CH
T ss_pred ccccccccccccccccc----c-cchhhhhcCCCEEEC------CC---CCCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 45567888888887532 1 2233 5678899999 55 6777775 47778999999999999998876
Q ss_pred hh-hcCCCCcEeecCCCCCCCCCC--cccccccCCceeecCCcccCccCcC----cCCCCCCCCccCceeec
Q 044750 277 TL-CELYNLRKLDIRRCPNLRELP--AGIGKLMNMRSLLNGQTYSLKYMPI----GISKLTSLRTLEKFVVG 341 (658)
Q Consensus 277 ~i-~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~~~~~ 341 (658)
.+ ..+++|+.|++++|. +..+- ..+..+++|+.|++.+|..... +. .+..+++|+.|+...+.
T Consensus 82 ~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEETT
T ss_pred chHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEcc
Confidence 55 468999999999887 44332 3467788999999999865432 32 25678999999855443
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.67 E-value=2.9e-08 Score=88.06 Aligned_cols=121 Identities=28% Similarity=0.256 Sum_probs=34.6
Q ss_pred ceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccc-c
Q 044750 178 KVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENI-G 256 (658)
Q Consensus 178 ~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~-~ 256 (658)
+.+.+++.++.+..+..--..+.+|+.|++++|.+. . ...+..++.|++|++ +. +.+..++..+ .
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~----~-l~~l~~L~~L~~L~L------~~---N~I~~i~~~l~~ 85 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT----K-LEGLPGLPRLKTLDL------SN---NRISSISEGLDK 85 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S-------TT----TT--EEE--------S---S---S-CHHHHH
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCc----c-ccCccChhhhhhccc------CC---CCCCccccchHH
Confidence 445566666665543222224556666666666532 1 123455666666666 33 5555554433 2
Q ss_pred CCCccceeecCCccccccc--hhhhcCCCCcEeecCCCCCCCCCCc----ccccccCCceeec
Q 044750 257 KLIHLKYLNLSELCIERLP--ETLCELYNLRKLDIRRCPNLRELPA----GIGKLMNMRSLLN 313 (658)
Q Consensus 257 ~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~----~i~~L~~L~~L~l 313 (658)
.+++|+.|++++|.|..+- ..++.+++|++|++.+|. +...+. .+..+|+|+.||-
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETT
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCC
Confidence 4566666666666655322 244556666666666665 332222 2445666666653
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.65 E-value=7.1e-10 Score=111.01 Aligned_cols=106 Identities=36% Similarity=0.555 Sum_probs=66.7
Q ss_pred ccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCC
Q 044750 219 LPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLREL 298 (658)
Q Consensus 219 ~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~l 298 (658)
+|..++.|..|..|.| +. +.+..+|..++++..|.||+|+.|.+..+|..++.|+ |+.|-+++|+ ++.+
T Consensus 90 lp~~~~~f~~Le~liL------y~---n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~l 158 (722)
T KOG0532|consen 90 LPEEACAFVSLESLIL------YH---NCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSL 158 (722)
T ss_pred CchHHHHHHHHHHHHH------Hh---ccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccC
Confidence 3445555555666655 44 5666666666677777777777777776666665543 6666666665 6666
Q ss_pred CcccccccCCceeecCCcccCccCcCcCCCCCCCCccC
Q 044750 299 PAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLE 336 (658)
Q Consensus 299 p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 336 (658)
|.+++.+.+|.+||.+.| .+..+|..++.+++|+.|.
T Consensus 159 p~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 159 PEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred CcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHH
Confidence 776776666777776666 4445565566666666553
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.63 E-value=3e-09 Score=106.65 Aligned_cols=164 Identities=26% Similarity=0.391 Sum_probs=118.2
Q ss_pred EEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccce
Q 044750 184 LNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKY 263 (658)
Q Consensus 184 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~ 263 (658)
+..+.+..+|..+.++..|..|+++.|..+ .+|..++.++ |++|-+ +. +.++.+|..++.+..|..
T Consensus 105 Ly~n~~r~ip~~i~~L~~lt~l~ls~NqlS----~lp~~lC~lp-Lkvli~------sN---Nkl~~lp~~ig~~~tl~~ 170 (722)
T KOG0532|consen 105 LYHNCIRTIPEAICNLEALTFLDLSSNQLS----HLPDGLCDLP-LKVLIV------SN---NKLTSLPEEIGLLPTLAH 170 (722)
T ss_pred HHhccceecchhhhhhhHHHHhhhccchhh----cCChhhhcCc-ceeEEE------ec---CccccCCcccccchhHHH
Confidence 444445556777777777777777777643 3455555555 778877 44 888899999998889999
Q ss_pred eecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccCceeeccC
Q 044750 264 LNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLEKFVVGGG 343 (658)
Q Consensus 264 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~ 343 (658)
||.+.|.+..+|+.+++|..|+.|.++.|. +..+|+++..| .|..||++.| .+..+|..|.+|+.|++|. ..++
T Consensus 171 ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScN-kis~iPv~fr~m~~Lq~l~---LenN 244 (722)
T KOG0532|consen 171 LDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCN-KISYLPVDFRKMRHLQVLQ---LENN 244 (722)
T ss_pred hhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccC-ceeecchhhhhhhhheeee---eccC
Confidence 999999999999999999999999999887 78888888855 5888999877 6778898899999999884 3344
Q ss_pred CCCCccccccccccCcccCCceec
Q 044750 344 VDGGSTCRLESLKNLQLLRKCGIE 367 (658)
Q Consensus 344 ~~~~~~~~~~~l~~L~~L~~l~i~ 367 (658)
.....+..+..-......+.|.+.
T Consensus 245 PLqSPPAqIC~kGkVHIFKyL~~q 268 (722)
T KOG0532|consen 245 PLQSPPAQICEKGKVHIFKYLSTQ 268 (722)
T ss_pred CCCCChHHHHhccceeeeeeecch
Confidence 333334433333333333334433
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=3.7e-09 Score=97.49 Aligned_cols=61 Identities=21% Similarity=0.178 Sum_probs=39.5
Q ss_pred ccceeecCCcccc--ccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCc
Q 044750 260 HLKYLNLSELCIE--RLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLK 320 (658)
Q Consensus 260 ~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~ 320 (658)
.|++|||++..|+ .+-..++.+.+|+.|.+.+.+.-..+-..+++-.+|+.|+++.|..++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t 248 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT 248 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc
Confidence 4777777777666 455556677777777777766444455556666677777777664433
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.47 E-value=1.1e-07 Score=99.13 Aligned_cols=118 Identities=31% Similarity=0.376 Sum_probs=88.5
Q ss_pred EEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCC-ccceeecCCccccccchhhhcCC
Q 044750 204 TLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLI-HLKYLNLSELCIERLPETLCELY 282 (658)
Q Consensus 204 ~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~L~ 282 (658)
.+....+... ........++.++.|++ .. +.+..+|.....+. +|++|++++|.+..+|..++.++
T Consensus 97 ~l~~~~~~~~----~~~~~~~~~~~l~~L~l------~~---n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~ 163 (394)
T COG4886 97 SLDLNLNRLR----SNISELLELTNLTSLDL------DN---NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLP 163 (394)
T ss_pred eeeccccccc----cCchhhhcccceeEEec------CC---cccccCccccccchhhcccccccccchhhhhhhhhccc
Confidence 4555555421 11233345577888888 44 77788888777774 89999999999988888888899
Q ss_pred CCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccC
Q 044750 283 NLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLE 336 (658)
Q Consensus 283 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 336 (658)
+|+.|++++|. +..+|...+.+++|+.|+++++ .+..+|..++....|+++.
T Consensus 164 ~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 164 NLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELD 215 (394)
T ss_pred cccccccCCch-hhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhh
Confidence 99999999887 8888887778888999999888 6677777666666677775
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.42 E-value=5.3e-07 Score=98.42 Aligned_cols=94 Identities=24% Similarity=0.350 Sum_probs=76.5
Q ss_pred cccEEEEccccCCCCCCccccccccccccCCCccceeecCCcccc-ccchhhhcCCCCcEeecCCCCCCCCCCccccccc
Q 044750 228 CLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIE-RLPETLCELYNLRKLDIRRCPNLRELPAGIGKLM 306 (658)
Q Consensus 228 ~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 306 (658)
.++.|+| +. +.....+|..++.+++|++|+|++|.+. .+|..++.+++|+.|+|++|.....+|..+++|+
T Consensus 419 ~v~~L~L------~~--n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 419 FIDGLGL------DN--QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEEEC------CC--CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 3677777 22 2334568888899999999999999987 8888899999999999999986678899899999
Q ss_pred CCceeecCCcccCccCcCcCCCC
Q 044750 307 NMRSLLNGQTYSLKYMPIGISKL 329 (658)
Q Consensus 307 ~L~~L~l~~~~~~~~~p~~i~~l 329 (658)
+|++|++++|.....+|..++.+
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred CCCEEECcCCcccccCChHHhhc
Confidence 99999999987777888776543
No 35
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.40 E-value=1.2e-08 Score=98.71 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=91.0
Q ss_pred cCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCc--cccCCCCcceEEEccCCCCCCCcCCC
Q 044750 511 TAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPD--YLLQSTALQELRIYFCDLLEELPILE 588 (658)
Q Consensus 511 ~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~--~~~~l~~L~~L~l~~c~~l~~~p~l~ 588 (658)
..+..|+.|..++|.++.+... ..-....++|+.|.+..|..+...-. .-.+.+.|+.+++.+|....+-. +.
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l----~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t-L~ 365 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVL----WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT-LA 365 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHH----HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh-Hh
Confidence 3789999999999988776544 33345789999999999987664322 23468899999999998765431 11
Q ss_pred ccccCCCCCCCeeeccCCCCcccc-----CCCCCCCCCccEEEEecChhHHHh
Q 044750 589 DRKTTDIPRLSSLEIGYCPKLKVL-----PNYLLRTTTLQELIIHRCPLLENR 636 (658)
Q Consensus 589 ~~~~~~~~~L~~L~l~~c~~l~~l-----~~~~~~l~~L~~L~l~~c~~l~~~ 636 (658)
..-.+||.|+.|.++.|..++.. ......+..|+.+.+++||.+++.
T Consensus 366 -sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 366 -SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred -hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 12368999999999999877754 444556789999999999988865
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.33 E-value=3.4e-07 Score=66.38 Aligned_cols=56 Identities=29% Similarity=0.441 Sum_probs=29.3
Q ss_pred ccceeecCCccccccch-hhhcCCCCcEeecCCCCCCCCCC-cccccccCCceeecCCc
Q 044750 260 HLKYLNLSELCIERLPE-TLCELYNLRKLDIRRCPNLRELP-AGIGKLMNMRSLLNGQT 316 (658)
Q Consensus 260 ~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~ 316 (658)
+|++|++++|.++.+|. .+.++++|++|++++|. +..+| ..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555555555553 44555555555555554 33333 24455555555555555
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.31 E-value=8.1e-08 Score=88.82 Aligned_cols=126 Identities=21% Similarity=0.235 Sum_probs=84.1
Q ss_pred ccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccc
Q 044750 196 IYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLP 275 (658)
Q Consensus 196 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp 275 (658)
...+..|..+++++|.+. .+.....-.+.+|+|++ ++ +.+..+-. ++.+.+|+.|||++|.++.+-
T Consensus 280 ~dTWq~LtelDLS~N~I~----~iDESvKL~Pkir~L~l------S~---N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~ 345 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT----QIDESVKLAPKLRRLIL------SQ---NRIRTVQN-LAELPQLQLLDLSGNLLAECV 345 (490)
T ss_pred cchHhhhhhccccccchh----hhhhhhhhccceeEEec------cc---cceeeehh-hhhcccceEeecccchhHhhh
Confidence 345667788888887642 23345566777888888 44 55555433 677788888888888777665
Q ss_pred hhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCc--CcCCCCCCCCccCce
Q 044750 276 ETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMP--IGISKLTSLRTLEKF 338 (658)
Q Consensus 276 ~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~~~ 338 (658)
..=.+|-|.++|.|++|. ++.+ +++++|-+|..||+++|. +..+- ..||+++.|+++.+.
T Consensus 346 Gwh~KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred hhHhhhcCEeeeehhhhh-Hhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhc
Confidence 444567778888888775 5544 457777778888888773 33332 457788888777543
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.5e-07 Score=91.79 Aligned_cols=136 Identities=23% Similarity=0.186 Sum_probs=69.9
Q ss_pred cCCCceEEEecCccCCCCcccccCchhHHHHhhhcCCCCCCceEEEeeeCC-CCCChhhhcccccceEEeeCCCCCC--C
Q 044750 387 ENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLNVEELQICFYGG-DIFPKWLTSLTYLRELNLWFCFNCE--H 463 (658)
Q Consensus 387 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~L~l~~~~~~~--~ 463 (658)
.+|+.|.++.|+. ...++...+..+|+++.|.+.++.. ........-+..|+.|+|++|.... .
T Consensus 197 ~~lK~L~l~~CGl-------------s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~ 263 (505)
T KOG3207|consen 197 SHLKQLVLNSCGL-------------SWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ 263 (505)
T ss_pred hhhheEEeccCCC-------------CHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc
Confidence 4555666665551 1344444555567777777766531 1112222356778888888887654 3
Q ss_pred CCCCCCcc-ccceeccccccceEeCccccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCc
Q 044750 464 LPPLGKLP-LEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISI 542 (658)
Q Consensus 464 l~~~~~lp-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~ 542 (658)
.+..+.+| |..|.+..+..-..- +... ........||+|++|++..+ +..+|.. -..+..
T Consensus 264 ~~~~~~l~~L~~Lnls~tgi~si~---~~d~-----------~s~~kt~~f~kL~~L~i~~N-~I~~w~s----l~~l~~ 324 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSSTGIASIA---EPDV-----------ESLDKTHTFPKLEYLNISEN-NIRDWRS----LNHLRT 324 (505)
T ss_pred ccccccccchhhhhccccCcchhc---CCCc-----------cchhhhcccccceeeecccC-ccccccc----cchhhc
Confidence 35566777 777766653321100 0000 00011235777777777665 3333433 223334
Q ss_pred CcccceeeeeCC
Q 044750 543 MPRLSSLWIRGC 554 (658)
Q Consensus 543 ~~~L~~L~L~~c 554 (658)
+++|+.|.+..+
T Consensus 325 l~nlk~l~~~~n 336 (505)
T KOG3207|consen 325 LENLKHLRITLN 336 (505)
T ss_pred cchhhhhhcccc
Confidence 556666665544
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.29 E-value=9.4e-07 Score=96.51 Aligned_cols=78 Identities=19% Similarity=0.315 Sum_probs=67.2
Q ss_pred ccceeecCCcccc-ccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccCc
Q 044750 260 HLKYLNLSELCIE-RLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLEK 337 (658)
Q Consensus 260 ~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 337 (658)
.++.|+|++|.+. .+|..++++++|+.|+|++|...+.+|..++.+++|+.|++++|.....+|..++.+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4788899998887 88888999999999999998866788888999999999999999777788888889999998864
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.27 E-value=1.3e-07 Score=89.58 Aligned_cols=83 Identities=18% Similarity=0.121 Sum_probs=43.4
Q ss_pred ccCCCccceeecCCcccc-----ccchhhhcCCCCcEeecCCCC---CCCCCCcc-------cccccCCceeecCCcccC
Q 044750 255 IGKLIHLKYLNLSELCIE-----RLPETLCELYNLRKLDIRRCP---NLRELPAG-------IGKLMNMRSLLNGQTYSL 319 (658)
Q Consensus 255 ~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~---~~~~lp~~-------i~~L~~L~~L~l~~~~~~ 319 (658)
...+..+++++|+||.+. .+...+.+.++|+.-++++-. ...++|.. +...++|+.|+|++|.+-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 444566666667766654 233445556666666666432 11233333 233456777777776544
Q ss_pred ccCcCc----CCCCCCCCccCc
Q 044750 320 KYMPIG----ISKLTSLRTLEK 337 (658)
Q Consensus 320 ~~~p~~----i~~l~~L~~L~~ 337 (658)
...++. +..++.|++|.+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L 127 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYL 127 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhh
Confidence 333332 344566666653
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=1.2e-06 Score=63.55 Aligned_cols=58 Identities=33% Similarity=0.477 Sum_probs=44.8
Q ss_pred CcccEEEEccccCCCCCCccccccccc-cccCCCccceeecCCccccccch-hhhcCCCCcEeecCCCC
Q 044750 227 ACLRALVIRQLSSFSHPSPNFIREIPE-NIGKLIHLKYLNLSELCIERLPE-TLCELYNLRKLDIRRCP 293 (658)
Q Consensus 227 ~~Lr~L~L~~~~~l~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~ 293 (658)
++|++|++ +. +.+..+|. .+..+++|++|++++|.++.+|+ .+.++++|++|++++|+
T Consensus 1 p~L~~L~l------~~---n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDL------SN---NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEE------TS---STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEEC------CC---CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46788888 44 66777774 56778888888888888887765 67888888888888875
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.22 E-value=1.7e-07 Score=86.80 Aligned_cols=101 Identities=31% Similarity=0.300 Sum_probs=71.4
Q ss_pred cCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccc
Q 044750 224 SKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIG 303 (658)
Q Consensus 224 ~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 303 (658)
...+.|..||| ++ +.++.+..++.-++.+|.|++++|.|..+- .+..|++|+.|||++|. +..+-..-.
T Consensus 281 dTWq~LtelDL------S~---N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~ 349 (490)
T KOG1259|consen 281 DTWQELTELDL------SG---NLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNL-LAECVGWHL 349 (490)
T ss_pred chHhhhhhccc------cc---cchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccch-hHhhhhhHh
Confidence 34467888888 66 777777777877888888888888888775 47788888888888876 555544445
Q ss_pred cccCCceeecCCcccCccCcCcCCCCCCCCccCc
Q 044750 304 KLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLEK 337 (658)
Q Consensus 304 ~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 337 (658)
+|-+.+.|.+.+|. +..+ .+++++-+|..|++
T Consensus 350 KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNK-IETL-SGLRKLYSLVNLDL 381 (490)
T ss_pred hhcCEeeeehhhhh-Hhhh-hhhHhhhhheeccc
Confidence 67778888888873 3322 34566666666653
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.21 E-value=9.7e-07 Score=91.95 Aligned_cols=129 Identities=28% Similarity=0.358 Sum_probs=87.0
Q ss_pred CccccCCCcceEEEeecCCCCcccccccccccCCC-cccEEEEccccCCCCCCccccccccccccCCCccceeecCCccc
Q 044750 193 PMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLA-CLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCI 271 (658)
Q Consensus 193 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i 271 (658)
.......+.+..|.+.++... ..+.....+. +|+.|++ +. +.+..+|..++.+++|+.|++++|.+
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i~----~i~~~~~~~~~nL~~L~l------~~---N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNIT----DIPPLIGLLKSNLKELDL------SD---NKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred chhhhcccceeEEecCCcccc----cCccccccchhhcccccc------cc---cchhhhhhhhhccccccccccCCchh
Confidence 333445567777777777642 2334344453 7778877 44 66777766677788888888888888
Q ss_pred cccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccC
Q 044750 272 ERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLE 336 (658)
Q Consensus 272 ~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 336 (658)
..+|...+.+.+|+.|++++|. +..+|..+..+..|+.|.+++|. ....+..+.+++++..+.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccc
Confidence 8887776677888888888776 77777766666678888877773 334445566666666664
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.16 E-value=2.1e-06 Score=56.72 Aligned_cols=39 Identities=33% Similarity=0.525 Sum_probs=27.2
Q ss_pred CccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCC
Q 044750 259 IHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLREL 298 (658)
Q Consensus 259 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~l 298 (658)
++|++|++++|.|+.+|+.+++|++|++|++++|. +..+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 46777888888887777777788888888888776 4443
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.05 E-value=1.6e-05 Score=79.57 Aligned_cols=167 Identities=21% Similarity=0.228 Sum_probs=97.8
Q ss_pred hhcCCCCCCceEEEeeeCCCCCChhhhcccccceEEeeCCCCCCCCCCCCCcc--ccceeccccccceEeCccccCCCCC
Q 044750 419 EALQPHLNVEELQICFYGGDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLP--LEKLQLYILKSVKRVGNEFLGIEES 496 (658)
Q Consensus 419 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lp--L~~L~l~~~~~l~~~~~~~~~~~~~ 496 (658)
..+..+.++..|.+.++....+|. ..++|+.|.+++|..+..+|. .+| |+.|.+.+|..+..+
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~--~LP~nLe~L~Ls~Cs~L~sL---------- 110 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPG--SIPEGLEKLTVCHCPEISGL---------- 110 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCc--hhhhhhhheEccCccccccc----------
Confidence 344455788899999887777773 345799999999887766663 345 888888887654211
Q ss_pred CCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCC--CCCccccCCCCcceEE
Q 044750 497 SEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLK--ALPDYLLQSTALQELR 574 (658)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~--~lp~~~~~l~~L~~L~ 574 (658)
.+.|+.|++.+. ....+. .-.++|+.|.+.++.... .+|.. --++|++|+
T Consensus 111 ----------------P~sLe~L~L~~n-~~~~L~---------~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~ 162 (426)
T PRK15386 111 ----------------PESVRSLEIKGS-ATDSIK---------NVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLS 162 (426)
T ss_pred ----------------ccccceEEeCCC-CCcccc---------cCcchHhheeccccccccccccccc--cCCcccEEE
Confidence 234666666532 111111 123567888875433211 12211 125799999
Q ss_pred EccCCCCCCCcCCCccccCCCCCCCeeeccCCCCcc-ccCC-CCCCCCCccEEEEecChhHHHhhc
Q 044750 575 IYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLK-VLPN-YLLRTTTLQELIIHRCPLLENRYR 638 (658)
Q Consensus 575 l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~-~l~~-~~~~l~~L~~L~l~~c~~l~~~~~ 638 (658)
+++|..+. +|. .+ -++|+.|.++.|.... .++. .+. +++ .|++.+|-.+.....
T Consensus 163 Is~c~~i~-LP~----~L--P~SLk~L~ls~n~~~sLeI~~~sLP--~nl-~L~f~n~lkL~~~~f 218 (426)
T PRK15386 163 LTGCSNII-LPE----KL--PESLQSITLHIEQKTTWNISFEGFP--DGL-DIDLQNSVLLSPDVF 218 (426)
T ss_pred ecCCCccc-Ccc----cc--cccCcEEEecccccccccCcccccc--ccc-EechhhhcccCHHHh
Confidence 99998653 331 11 1589999988764111 1221 111 345 778888866554333
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.05 E-value=6.4e-07 Score=85.08 Aligned_cols=136 Identities=17% Similarity=0.233 Sum_probs=75.4
Q ss_pred ccCCCcceEEEeecCCCCccc-ccccccccCCCcccEEEEccccCCCCCCcccccccc-------ccccCCCccceeecC
Q 044750 196 IYGLNRLRTLLIYDKGPSLRS-SILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP-------ENIGKLIHLKYLNLS 267 (658)
Q Consensus 196 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp-------~~~~~l~~L~~L~L~ 267 (658)
...+..+..+++++|.+.... ...-..+.+-+.||.-++++. +.+ .....+| +.+..+++|++|+||
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~--ftG---R~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM--FTG---RLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh--hcC---CcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 445667777777777643211 111233556667777777321 011 1122233 345567889999999
Q ss_pred Ccccc-----ccchhhhcCCCCcEeecCCCCCCCCCC--------------cccccccCCceeecCCcccCccCcC----
Q 044750 268 ELCIE-----RLPETLCELYNLRKLDIRRCPNLRELP--------------AGIGKLMNMRSLLNGQTYSLKYMPI---- 324 (658)
Q Consensus 268 ~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~lp--------------~~i~~L~~L~~L~l~~~~~~~~~p~---- 324 (658)
.|-+. .+-.-+.+++.|++|.|.+|. ++... .-+..-++|+.+..++| ++...+.
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A 178 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALA 178 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHH
Confidence 99866 222345678899999999886 43211 11234456777777666 3333322
Q ss_pred -cCCCCCCCCccCce
Q 044750 325 -GISKLTSLRTLEKF 338 (658)
Q Consensus 325 -~i~~l~~L~~L~~~ 338 (658)
.+...+.|+++++.
T Consensus 179 ~~~~~~~~leevr~~ 193 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLS 193 (382)
T ss_pred HHHHhccccceEEEe
Confidence 23444555555443
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=1.4e-05 Score=79.95 Aligned_cols=61 Identities=23% Similarity=0.422 Sum_probs=33.7
Q ss_pred CCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCc
Q 044750 513 FPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELP 585 (658)
Q Consensus 513 ~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p 585 (658)
++++++|++++| .|+.+.. -.++|++|.+++|..++.+|..+ .++|++|.+++|..+..+|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 456666666666 3433311 12346666666666666665544 2456666666665555555
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=8.7e-07 Score=82.18 Aligned_cols=160 Identities=21% Similarity=0.234 Sum_probs=83.2
Q ss_pred cCcccCCCceEEEecCccCCCCcccccCchhHHHHhhhcCCCCCCceEEEeeeCCCC---CChhhhcccccceEEeeCCC
Q 044750 383 LHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLNVEELQICFYGGDI---FPKWLTSLTYLRELNLWFCF 459 (658)
Q Consensus 383 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---~p~~~~~l~~L~~L~l~~~~ 459 (658)
++.|.+|+.|.+.+.. ....+...+..-.+|+.|+++.+.+.. +--.+.+++.|..|+++.|.
T Consensus 206 Ls~C~kLk~lSlEg~~--------------LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLR--------------LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred HHHHHhhhhccccccc--------------cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence 4456666666666554 133444455556677777777776543 11224478889999999996
Q ss_pred CCCCCC-C-CCCc-c-ccceeccccccceEeCccccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccc
Q 044750 460 NCEHLP-P-LGKL-P-LEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRIT 535 (658)
Q Consensus 460 ~~~~l~-~-~~~l-p-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~ 535 (658)
..+..- . +... + |+.|+++++..--.... +......+|+|.+|+|++|..++.-.
T Consensus 272 l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh-----------------~~tL~~rcp~l~~LDLSD~v~l~~~~---- 330 (419)
T KOG2120|consen 272 LFTEKVTVAVAHISETLTQLNLSGYRRNLQKSH-----------------LSTLVRRCPNLVHLDLSDSVMLKNDC---- 330 (419)
T ss_pred ccchhhhHHHhhhchhhhhhhhhhhHhhhhhhH-----------------HHHHHHhCCceeeeccccccccCchH----
Confidence 544221 1 1222 2 66666665542110000 00112356666666666665555422
Q ss_pred cccccCcCcccceeeeeCCCCCC-CCCccccCCCCcceEEEccC
Q 044750 536 RKENISIMPRLSSLWIRGCPKLK-ALPDYLLQSTALQELRIYFC 578 (658)
Q Consensus 536 ~~~~~~~~~~L~~L~L~~c~~l~-~lp~~~~~l~~L~~L~l~~c 578 (658)
...+..|+.|++|.++.|-.+. ..-..+...|+|.+|++-+|
T Consensus 331 -~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 331 -FQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred -HHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 2334456666666666664321 11112334555666665555
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=2.3e-05 Score=51.76 Aligned_cols=40 Identities=33% Similarity=0.449 Sum_probs=33.6
Q ss_pred CcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccc
Q 044750 227 ACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLP 275 (658)
Q Consensus 227 ~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp 275 (658)
++|++|++ ++ +.+..+|..+++|++|++|++++|.|+.+|
T Consensus 1 ~~L~~L~l------~~---N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDL------SN---NQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEE------TS---SS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEc------cC---CCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 47899999 66 788899988999999999999999998776
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.43 E-value=9.9e-05 Score=80.61 Aligned_cols=129 Identities=26% Similarity=0.194 Sum_probs=87.2
Q ss_pred ceEEEEEEcCCCCC--CCcc-ccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccccc
Q 044750 178 KVRHLGLNFEGGAP--LPMS-IYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPEN 254 (658)
Q Consensus 178 ~~~~l~l~~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~ 254 (658)
+++++.+.+...-. -+.. ...+|.|++|.+.+-.... ..+.....++++|+.||+ ++ +.+..+ .+
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDI------S~---TnI~nl-~G 190 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDI------SG---TNISNL-SG 190 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc--hhHHHHhhccCccceeec------CC---CCccCc-HH
Confidence 45566665533211 1112 2368999999998854321 333455678999999999 55 666666 67
Q ss_pred ccCCCccceeecCCcccccc--chhhhcCCCCcEeecCCCCCCCCCCcc-------cccccCCceeecCCcccC
Q 044750 255 IGKLIHLKYLNLSELCIERL--PETLCELYNLRKLDIRRCPNLRELPAG-------IGKLMNMRSLLNGQTYSL 319 (658)
Q Consensus 255 ~~~l~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~~~~~~~lp~~-------i~~L~~L~~L~l~~~~~~ 319 (658)
+++|++|+.|.+++-.+..- -..+.+|++|++||++...... .+.- -..||+||.||.+++..-
T Consensus 191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchh
Confidence 88999999999998877732 2477889999999999765332 2211 124889999999987543
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.25 E-value=5.4e-05 Score=79.01 Aligned_cols=82 Identities=28% Similarity=0.369 Sum_probs=44.1
Q ss_pred ccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCccc
Q 044750 223 FSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGI 302 (658)
Q Consensus 223 ~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i 302 (658)
+..++.|..|++ .+ +.+..+...+..+++|++|++++|.|+.+. .+..+..|+.|++.+|. +..++ .+
T Consensus 91 l~~~~~l~~l~l------~~---n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~-~~ 158 (414)
T KOG0531|consen 91 LSKLKSLEALDL------YD---NKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDIS-GL 158 (414)
T ss_pred cccccceeeeec------cc---cchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhcc-CC
Confidence 445555555555 33 444444443555566666666666666553 44555556666666655 33332 23
Q ss_pred ccccCCceeecCCc
Q 044750 303 GKLMNMRSLLNGQT 316 (658)
Q Consensus 303 ~~L~~L~~L~l~~~ 316 (658)
..++.|+.+++++|
T Consensus 159 ~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 159 ESLKSLKLLDLSYN 172 (414)
T ss_pred ccchhhhcccCCcc
Confidence 44555666666655
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.24 E-value=0.00013 Score=79.74 Aligned_cols=110 Identities=22% Similarity=0.192 Sum_probs=80.1
Q ss_pred CCcceEEEeecCCCCcccccccc-cccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccchh
Q 044750 199 LNRLRTLLIYDKGPSLRSSILPG-LFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPET 277 (658)
Q Consensus 199 ~~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~ 277 (658)
-.+|+.|++.+.... ...|+. .-..+|.||.|.+.+-... .+++-.-..++++|+.||+++++++.+ ..
T Consensus 121 r~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~-------~~dF~~lc~sFpNL~sLDIS~TnI~nl-~G 190 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFD-------NDDFSQLCASFPNLRSLDISGTNISNL-SG 190 (699)
T ss_pred HHhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceec-------chhHHHHhhccCccceeecCCCCccCc-HH
Confidence 468999999886532 244443 3467899999999432211 122334466889999999999999988 69
Q ss_pred hhcCCCCcEeecCCCCCCCCC--CcccccccCCceeecCCcccC
Q 044750 278 LCELYNLRKLDIRRCPNLREL--PAGIGKLMNMRSLLNGQTYSL 319 (658)
Q Consensus 278 i~~L~~L~~L~L~~~~~~~~l--p~~i~~L~~L~~L~l~~~~~~ 319 (658)
+++|++|++|.+++=. ...- -..+.+|++|++||+|.....
T Consensus 191 IS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccc
Confidence 9999999999998754 3221 235789999999999987443
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.00014 Score=67.97 Aligned_cols=66 Identities=21% Similarity=0.228 Sum_probs=32.3
Q ss_pred CCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCC--ccccCCCCcceEEEccCCCCCC
Q 044750 512 AFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALP--DYLLQSTALQELRIYFCDLLEE 583 (658)
Q Consensus 512 ~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~ 583 (658)
.||++..+.+..|| +++... ..+...+|.+--|.|..+ ++.+.. ..+..+++|..|.+++++....
T Consensus 197 ~Fpnv~sv~v~e~P-lK~~s~----ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP-LKTESS----EKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred hcccchheeeecCc-ccchhh----cccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCccccc
Confidence 46666666665552 222111 233344555555555554 333221 2244566666666666665543
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.09 E-value=1.6e-05 Score=82.83 Aligned_cols=88 Identities=27% Similarity=0.247 Sum_probs=58.9
Q ss_pred cccccccccccCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCc
Q 044750 246 NFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIG 325 (658)
Q Consensus 246 ~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~ 325 (658)
|.+..+..+++-++.|+.|+|++|.++..- .+..|++|++|||++|. +..+|.--..=.+|+.|.+++|. ++.+ .+
T Consensus 174 N~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~-l~tL-~g 249 (1096)
T KOG1859|consen 174 NRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNA-LTTL-RG 249 (1096)
T ss_pred hhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhhheeeeecccH-HHhh-hh
Confidence 555556666777788888888888877664 77788888888888877 66666421111247788887773 3322 45
Q ss_pred CCCCCCCCccCc
Q 044750 326 ISKLTSLRTLEK 337 (658)
Q Consensus 326 i~~l~~L~~L~~ 337 (658)
+.+|.+|+.|++
T Consensus 250 ie~LksL~~LDl 261 (1096)
T KOG1859|consen 250 IENLKSLYGLDL 261 (1096)
T ss_pred HHhhhhhhccch
Confidence 667777777764
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.97 E-value=0.00017 Score=59.35 Aligned_cols=70 Identities=27% Similarity=0.385 Sum_probs=44.9
Q ss_pred cccccccccccC-CCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCc
Q 044750 246 NFIREIPENIGK-LIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQT 316 (658)
Q Consensus 246 ~~~~~lp~~~~~-l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 316 (658)
+.++.+|+.+.. .+.++.|++++|.|..+|.++..++.|+.|+++.|. +...|..+..|.+|-.|+..++
T Consensus 63 N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 63 NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCC
Confidence 555666655443 345666677777677777666666777777776665 5566666666666666666655
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.85 E-value=0.00025 Score=74.06 Aligned_cols=118 Identities=26% Similarity=0.307 Sum_probs=86.3
Q ss_pred EEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccce
Q 044750 184 LNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKY 263 (658)
Q Consensus 184 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~ 263 (658)
+..+.+.........+.+|..|++.+|.+. .....+..+++|++|++ ++ +.+..+. .+..++.|+.
T Consensus 79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~----~i~~~l~~~~~L~~L~l------s~---N~I~~i~-~l~~l~~L~~ 144 (414)
T KOG0531|consen 79 LRQNLIAKILNHLSKLKSLEALDLYDNKIE----KIENLLSSLVNLQVLDL------SF---NKITKLE-GLSTLTLLKE 144 (414)
T ss_pred cchhhhhhhhcccccccceeeeeccccchh----hcccchhhhhcchheec------cc---ccccccc-chhhccchhh
Confidence 344444333344667888999999988743 22232677899999999 55 7777764 4677888999
Q ss_pred eecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcc-cccccCCceeecCCcc
Q 044750 264 LNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAG-IGKLMNMRSLLNGQTY 317 (658)
Q Consensus 264 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~ 317 (658)
|++++|.|..++ .+..+++|+.+++++|. +..++.. ...+.+|+.+.+.+|.
T Consensus 145 L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 145 LNLSGNLISDIS-GLESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred heeccCcchhcc-CCccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCc
Confidence 999999998776 55669999999999988 5555543 5778888888888874
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.79 E-value=3e-05 Score=80.90 Aligned_cols=125 Identities=20% Similarity=0.169 Sum_probs=95.7
Q ss_pred CCceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccccc-
Q 044750 176 GDKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPEN- 254 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~- 254 (658)
|.++..++..+|....+..++.-++.|++|+++.|... . -..+..+++|+.||| ++ |.+..+|.-
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~----~-v~~Lr~l~~LkhLDl------sy---N~L~~vp~l~ 228 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT----K-VDNLRRLPKLKHLDL------SY---NCLRHVPQLS 228 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh----h-hHHHHhccccccccc------cc---chhccccccc
Confidence 55666777777776656667777899999999999742 1 246788999999999 66 778888753
Q ss_pred ccCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCC--CCCcccccccCCceeecCCcc
Q 044750 255 IGKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLR--ELPAGIGKLMNMRSLLNGQTY 317 (658)
Q Consensus 255 ~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~~~ 317 (658)
...+. |..|.+++|.++++- .+.+|++|+.||+++|-... ++ .-++.|..|+.|.+.||.
T Consensus 229 ~~gc~-L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 229 MVGCK-LQLLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhh-heeeeecccHHHhhh-hHHhhhhhhccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCc
Confidence 23344 999999999999885 78999999999999986322 22 225778889999999984
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.77 E-value=6.3e-05 Score=80.88 Aligned_cols=91 Identities=26% Similarity=0.347 Sum_probs=52.2
Q ss_pred cCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCC--CCCccccCCCCcceEEEccCCCCCCCcCCC
Q 044750 511 TAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLK--ALPDYLLQSTALQELRIYFCDLLEELPILE 588 (658)
Q Consensus 511 ~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~--~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~ 588 (658)
..+++|+.|++..+..+++... ......+|+|+.|.+.+|..++ .+-.....+++|++|+|++|..+.+-. +.
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l----~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~-l~ 314 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGL----SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSG-LE 314 (482)
T ss_pred hhcCCcCccchhhhhccCchhH----HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHH-HH
Confidence 3567778888877755554433 2222237788888877776543 223334467778888888887764311 11
Q ss_pred ccccCCCCCCCeeeccCCC
Q 044750 589 DRKTTDIPRLSSLEIGYCP 607 (658)
Q Consensus 589 ~~~~~~~~~L~~L~l~~c~ 607 (658)
.. ..+||+|+.|.+..+.
T Consensus 315 ~~-~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 315 AL-LKNCPNLRELKLLSLN 332 (482)
T ss_pred HH-HHhCcchhhhhhhhcC
Confidence 12 3446666555544443
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.73 E-value=0.0028 Score=56.19 Aligned_cols=13 Identities=38% Similarity=0.434 Sum_probs=5.6
Q ss_pred ccceeecCCcccc
Q 044750 260 HLKYLNLSELCIE 272 (658)
Q Consensus 260 ~L~~L~L~~~~i~ 272 (658)
+|..|.|.+|+|.
T Consensus 89 ~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 89 NLKTLILTNNSIQ 101 (233)
T ss_pred ccceEEecCcchh
Confidence 3444444444433
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.69 E-value=0.00036 Score=57.51 Aligned_cols=89 Identities=21% Similarity=0.282 Sum_probs=63.7
Q ss_pred CcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccchhhh
Q 044750 200 NRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPETLC 279 (658)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~ 279 (658)
.+|....+++|... ..++.+-..++-+..|++ .+ +.+..+|..+..++.||.|+++.|.+...|..+.
T Consensus 53 ~el~~i~ls~N~fk---~fp~kft~kf~t~t~lNl------~~---neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~ 120 (177)
T KOG4579|consen 53 YELTKISLSDNGFK---KFPKKFTIKFPTATTLNL------AN---NEISDVPEELAAMPALRSLNLRFNPLNAEPRVIA 120 (177)
T ss_pred ceEEEEecccchhh---hCCHHHhhccchhhhhhc------ch---hhhhhchHHHhhhHHhhhcccccCccccchHHHH
Confidence 34444555555431 122223345566778888 44 7788889888899999999999999998888888
Q ss_pred cCCCCcEeecCCCCCCCCCCcc
Q 044750 280 ELYNLRKLDIRRCPNLRELPAG 301 (658)
Q Consensus 280 ~L~~L~~L~L~~~~~~~~lp~~ 301 (658)
.|.+|-.|+..++. ...+|-.
T Consensus 121 ~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 121 PLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHhHHHhcCCCCc-cccCcHH
Confidence 89999999988877 5566654
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.60 E-value=0.0026 Score=56.39 Aligned_cols=103 Identities=26% Similarity=0.339 Sum_probs=72.5
Q ss_pred ceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc--ccc
Q 044750 178 KVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP--ENI 255 (658)
Q Consensus 178 ~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp--~~~ 255 (658)
....+++.++++. ....+..+++|.+|.+.+|++. .+-+..-..+++|.+|.| .+ +.+..+- .-+
T Consensus 43 ~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt---~I~p~L~~~~p~l~~L~L------tn---Nsi~~l~dl~pL 109 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRIT---RIDPDLDTFLPNLKTLIL------TN---NSIQELGDLDPL 109 (233)
T ss_pred ccceecccccchh-hcccCCCccccceEEecCCcce---eeccchhhhccccceEEe------cC---cchhhhhhcchh
Confidence 4455677777665 3456788999999999999865 333444456788999999 44 5554443 235
Q ss_pred cCCCccceeecCCccccccch----hhhcCCCCcEeecCCCC
Q 044750 256 GKLIHLKYLNLSELCIERLPE----TLCELYNLRKLDIRRCP 293 (658)
Q Consensus 256 ~~l~~L~~L~L~~~~i~~lp~----~i~~L~~L~~L~L~~~~ 293 (658)
..|+.|++|.+-+|.++.... .+..+++|++||+.+-.
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 678999999999998775442 45677888888877643
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.58 E-value=0.001 Score=36.40 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=14.4
Q ss_pred ccceeecCCccccccchhhhc
Q 044750 260 HLKYLNLSELCIERLPETLCE 280 (658)
Q Consensus 260 ~L~~L~L~~~~i~~lp~~i~~ 280 (658)
+|++|++++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766554
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.08 E-value=0.0031 Score=58.39 Aligned_cols=82 Identities=26% Similarity=0.199 Sum_probs=43.4
Q ss_pred CCCccceeecCCc--ccc-ccchhhhcCCCCcEeecCCCCCCC---CCCcccccccCCceeecCCcccCccCcC----cC
Q 044750 257 KLIHLKYLNLSEL--CIE-RLPETLCELYNLRKLDIRRCPNLR---ELPAGIGKLMNMRSLLNGQTYSLKYMPI----GI 326 (658)
Q Consensus 257 ~l~~L~~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~~~---~lp~~i~~L~~L~~L~l~~~~~~~~~p~----~i 326 (658)
.|++|++|.++.| .+. .++...-++++|++|++++|+ +. +++ .+..+++|..|++..|.... +-. .+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~-pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf 139 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLR-PLKELENLKSLDLFNCSVTN-LDDYREKVF 139 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccc-hhhhhcchhhhhcccCCccc-cccHHHHHH
Confidence 4566677777666 333 444444555777777777665 22 221 13455566666666663322 111 13
Q ss_pred CCCCCCCccCceeec
Q 044750 327 SKLTSLRTLEKFVVG 341 (658)
Q Consensus 327 ~~l~~L~~L~~~~~~ 341 (658)
.-+++|+.|+.+.+.
T Consensus 140 ~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDVD 154 (260)
T ss_pred HHhhhhccccccccC
Confidence 445666666654443
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.00062 Score=63.15 Aligned_cols=100 Identities=28% Similarity=0.316 Sum_probs=67.2
Q ss_pred CCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccch-
Q 044750 198 GLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPE- 276 (658)
Q Consensus 198 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~- 276 (658)
.+.+.+.|++.+++++- ......|+.|.||.| +- |.+.+|. .+..|++|+.|.|+.|.|..+-+
T Consensus 17 dl~~vkKLNcwg~~L~D-----Isic~kMp~lEVLsL------Sv---NkIssL~-pl~rCtrLkElYLRkN~I~sldEL 81 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD-----ISICEKMPLLEVLSL------SV---NKISSLA-PLQRCTRLKELYLRKNCIESLDEL 81 (388)
T ss_pred HHHHhhhhcccCCCccH-----HHHHHhcccceeEEe------ec---cccccch-hHHHHHHHHHHHHHhcccccHHHH
Confidence 34567777788776431 244578888888888 44 6666663 47788899999999888775542
Q ss_pred -hhhcCCCCcEeecCCCCCCCCCCc-----ccccccCCceee
Q 044750 277 -TLCELYNLRKLDIRRCPNLRELPA-----GIGKLMNMRSLL 312 (658)
Q Consensus 277 -~i~~L~~L~~L~L~~~~~~~~lp~-----~i~~L~~L~~L~ 312 (658)
-+.+|++|++|.|..|.-.+.-+. .+..|++|+.||
T Consensus 82 ~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 456788888888887764443332 244566666664
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.0048 Score=58.00 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=49.1
Q ss_pred cCcccceeeeeCCCCCC-CCCccccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCCC-----
Q 044750 542 IMPRLSSLWIRGCPKLK-ALPDYLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPNY----- 615 (658)
Q Consensus 542 ~~~~L~~L~L~~c~~l~-~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~----- 615 (658)
-||++..+.+..||.-+ +--.+...++.+--|.++.+.. .++..+ ..+..+|+|..|.+.++|....+-..
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~i-dswasv--D~Ln~f~~l~dlRv~~~Pl~d~l~~~err~l 273 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNI-DSWASV--DALNGFPQLVDLRVSENPLSDPLRGGERRFL 273 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhccccc-ccHHHH--HHHcCCchhheeeccCCcccccccCCcceEE
Confidence 57888888888886432 2223344566666677776643 222221 24567888888888888866554321
Q ss_pred -CCCCCCccEEEE
Q 044750 616 -LLRTTTLQELII 627 (658)
Q Consensus 616 -~~~l~~L~~L~l 627 (658)
+..+++++.|+=
T Consensus 274 lIaRL~~v~vLNG 286 (418)
T KOG2982|consen 274 LIARLTKVQVLNG 286 (418)
T ss_pred EEeeccceEEecC
Confidence 334556665543
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.82 E-value=0.0078 Score=55.81 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=72.6
Q ss_pred cCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCC--CCCCCCCccccCCCCcceEEEccCCCC--CCCcC
Q 044750 511 TAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGC--PKLKALPDYLLQSTALQELRIYFCDLL--EELPI 586 (658)
Q Consensus 511 ~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c--~~l~~lp~~~~~l~~L~~L~l~~c~~l--~~~p~ 586 (658)
..|..|+.|.+.++ .++.. ..+..+|+|++|.++.| .....++.....+++|++|.+++|.+- ..++
T Consensus 40 d~~~~le~ls~~n~-gltt~-------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~- 110 (260)
T KOG2739|consen 40 DEFVELELLSVINV-GLTTL-------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR- 110 (260)
T ss_pred ccccchhhhhhhcc-ceeec-------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-
Confidence 46777777777766 22222 23457889999999988 444456666677899999999999753 2333
Q ss_pred CCccccCCCCCCCeeeccCCCCcccc--C-CCCCCCCCccEEEEecCh
Q 044750 587 LEDRKTTDIPRLSSLEIGYCPKLKVL--P-NYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 587 l~~~~~~~~~~L~~L~l~~c~~l~~l--~-~~~~~l~~L~~L~l~~c~ 631 (658)
.+..+++|..|++.+|+...-- - ..+.-+++|+.|+-..+.
T Consensus 111 ----pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 111 ----PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred ----hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 4556778899999999755411 1 124456888888776554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.00099 Score=61.83 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=38.9
Q ss_pred ccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCcc-----ccCCCCcceEE
Q 044750 510 VTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDY-----LLQSTALQELR 574 (658)
Q Consensus 510 ~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~-----~~~l~~L~~L~ 574 (658)
+..|++|++|+|..+ .+.++.. ...+.++|+|++|.|..||=-..-+.. +.-||+|++|+
T Consensus 59 l~rCtrLkElYLRkN-~I~sldE----L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 59 LQRCTRLKELYLRKN-CIESLDE----LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHHHHHHHhc-ccccHHH----HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 457888888888765 3333332 334567899999999888765544332 34577777765
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.23 E-value=0.0032 Score=67.65 Aligned_cols=115 Identities=25% Similarity=0.397 Sum_probs=55.2
Q ss_pred CCCcceeeecCCccccccccccccccccCcCcccceeeeeCC-CCCCCCC----ccccCCCCcceEEEccCCCCCCCcCC
Q 044750 513 FPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGC-PKLKALP----DYLLQSTALQELRIYFCDLLEELPIL 587 (658)
Q Consensus 513 ~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c-~~l~~lp----~~~~~l~~L~~L~l~~c~~l~~~p~l 587 (658)
++.|+.|.+.+|..+.+... .......+.|+.|++++| ......+ .....+++|+.|+++.|..+.+.- +
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~-l 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSL----DALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG-L 261 (482)
T ss_pred CchhhHhhhcccccCChhhH----HHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh-H
Confidence 56666666666655544221 223335666666666652 2222111 122335566666666665433211 0
Q ss_pred CccccCCCCCCCeeeccCCCCccc--cCCCCCCCCCccEEEEecChhH
Q 044750 588 EDRKTTDIPRLSSLEIGYCPKLKV--LPNYLLRTTTLQELIIHRCPLL 633 (658)
Q Consensus 588 ~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~c~~l 633 (658)
. .....||+|++|.+.+|..++. +......++.|++|++++|..+
T Consensus 262 ~-~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 262 S-ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred H-HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 0 0112256666666666654332 2233445566666666666555
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.91 E-value=0.012 Score=54.69 Aligned_cols=94 Identities=14% Similarity=0.159 Sum_probs=48.7
Q ss_pred CCCcceEEEeecCCCCccc-ccccccccCCCcccEEEEccccCCCC----CCccccccccccccCCCccceeecCCcccc
Q 044750 198 GLNRLRTLLIYDKGPSLRS-SILPGLFSKLACLRALVIRQLSSFSH----PSPNFIREIPENIGKLIHLKYLNLSELCIE 272 (658)
Q Consensus 198 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~l~~----~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~ 272 (658)
.+..+..+++++|.+.... ..+...+.+-++|++-++++. +.+ .-...+..+.+.+.+|++|+..+|+.|-+.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~--ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA--FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh--hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 4566666667766543110 011122334455666666210 000 000111223344567788888888888766
Q ss_pred -ccch----hhhcCCCCcEeecCCCC
Q 044750 273 -RLPE----TLCELYNLRKLDIRRCP 293 (658)
Q Consensus 273 -~lp~----~i~~L~~L~~L~L~~~~ 293 (658)
..|+ -+++-+.|.+|.+++|.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC
Confidence 4443 34566778888888775
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.83 E-value=0.0046 Score=54.92 Aligned_cols=67 Identities=22% Similarity=0.447 Sum_probs=50.9
Q ss_pred cCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCC-CccccCCCCcceEEEccCCCC
Q 044750 511 TAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKAL-PDYLLQSTALQELRIYFCDLL 581 (658)
Q Consensus 511 ~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l-p~~~~~l~~L~~L~l~~c~~l 581 (658)
..++.++.|.+.+|..+.+|..... .+..|+|+.|+|++|+.+++- -..+..+++|+.|.|.+-+..
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l----~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERL----GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred hccchhhhheeccccchhhHHHHHh----cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 4788899999999999999887322 236899999999999887743 344667888888888775543
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.82 E-value=0.017 Score=29.22 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=6.1
Q ss_pred ccceeecCCccccccc
Q 044750 260 HLKYLNLSELCIERLP 275 (658)
Q Consensus 260 ~L~~L~L~~~~i~~lp 275 (658)
+|+.|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.69 E-value=0.0096 Score=32.50 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=10.9
Q ss_pred CCcEeecCCCCCCCCCCcccc
Q 044750 283 NLRKLDIRRCPNLRELPAGIG 303 (658)
Q Consensus 283 ~L~~L~L~~~~~~~~lp~~i~ 303 (658)
+|++||+++|. +..+|.+++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTT
T ss_pred CccEEECCCCc-CEeCChhhc
Confidence 35666666664 445555543
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.42 E-value=0.032 Score=51.98 Aligned_cols=85 Identities=21% Similarity=0.252 Sum_probs=48.9
Q ss_pred ccCCCcccEEEEccccCCCCCCccccc-----cccccccCCCccceeecCCccc----cccc-------hhhhcCCCCcE
Q 044750 223 FSKLACLRALVIRQLSSFSHPSPNFIR-----EIPENIGKLIHLKYLNLSELCI----ERLP-------ETLCELYNLRK 286 (658)
Q Consensus 223 ~~~l~~Lr~L~L~~~~~l~~~~~~~~~-----~lp~~~~~l~~L~~L~L~~~~i----~~lp-------~~i~~L~~L~~ 286 (658)
+..+..+..++| ++ +.++ .+...+.+-.+|+..+++.-.. .++| +.+-++++|+.
T Consensus 26 l~~~d~~~evdL------SG---NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~ 96 (388)
T COG5238 26 LEMMDELVEVDL------SG---NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQK 96 (388)
T ss_pred HHhhcceeEEec------cC---CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCccee
Confidence 344667777777 33 3222 2444455566777777664321 1232 23456777777
Q ss_pred eecCCCCCCCCCCcc----cccccCCceeecCCc
Q 044750 287 LDIRRCPNLRELPAG----IGKLMNMRSLLNGQT 316 (658)
Q Consensus 287 L~L~~~~~~~~lp~~----i~~L~~L~~L~l~~~ 316 (658)
.+|++|.+-.+.|.. |++-+.|.||.+++|
T Consensus 97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred eeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 777777655555543 345566777777766
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.23 E-value=0.0062 Score=54.10 Aligned_cols=40 Identities=25% Similarity=0.485 Sum_probs=24.2
Q ss_pred CCCCCeeeccCCCCccccC-CCCCCCCCccEEEEecChhHH
Q 044750 595 IPRLSSLEIGYCPKLKVLP-NYLLRTTTLQELIIHRCPLLE 634 (658)
Q Consensus 595 ~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~ 634 (658)
.|+|+.|+|++|+.+++-. ..+..+++|+.|.+++.|.+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 4566666666666665432 234556677777777666444
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.73 E-value=0.0065 Score=55.04 Aligned_cols=85 Identities=18% Similarity=0.127 Sum_probs=62.7
Q ss_pred ccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCccc
Q 044750 223 FSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGI 302 (658)
Q Consensus 223 ~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i 302 (658)
+..++..++||+ +. +.+..+-..++.++.|..|+++.|.+..+|..++.+..++.+++..|. .+..|.++
T Consensus 38 i~~~kr~tvld~------~s---~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 38 IASFKRVTVLDL------SS---NRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hhccceeeeehh------hh---hHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 445566777777 33 444555556666777888888888888888888888888888877765 77888888
Q ss_pred ccccCCceeecCCcc
Q 044750 303 GKLMNMRSLLNGQTY 317 (658)
Q Consensus 303 ~~L~~L~~L~l~~~~ 317 (658)
+.++++++++..++.
T Consensus 108 ~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTE 122 (326)
T ss_pred cccCCcchhhhccCc
Confidence 888888888887774
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.62 E-value=0.074 Score=26.82 Aligned_cols=17 Identities=47% Similarity=0.667 Sum_probs=8.4
Q ss_pred CCCcEeecCCCCCCCCCC
Q 044750 282 YNLRKLDIRRCPNLRELP 299 (658)
Q Consensus 282 ~~L~~L~L~~~~~~~~lp 299 (658)
++|+.|++++|. +..+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 356777777776 55554
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.00 E-value=0.52 Score=39.81 Aligned_cols=103 Identities=15% Similarity=0.294 Sum_probs=43.3
Q ss_pred cccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc-ccccCCCccceeecCCccccc
Q 044750 195 SIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP-ENIGKLIHLKYLNLSELCIER 273 (658)
Q Consensus 195 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~i~~ 273 (658)
.|.++++|+.+.+...- . ......|.++..|+.+.+ .. + +..++ ..+.+++.|+++.+.. .+..
T Consensus 7 ~F~~~~~l~~i~~~~~~-~---~I~~~~F~~~~~l~~i~~------~~---~-~~~i~~~~F~~~~~l~~i~~~~-~~~~ 71 (129)
T PF13306_consen 7 AFYNCSNLESITFPNTI-K---KIGENAFSNCTSLKSINF------PN---N-LTSIGDNAFSNCKSLESITFPN-NLKS 71 (129)
T ss_dssp TTTT-TT--EEEETST------EE-TTTTTT-TT-SEEEE------SS---T-TSCE-TTTTTT-TT-EEEEETS-TT-E
T ss_pred HHhCCCCCCEEEECCCe-e---EeChhhcccccccccccc------cc---c-ccccceeeeecccccccccccc-cccc
Confidence 45566677776665321 1 222345666666777776 21 1 33333 2355565677777754 3443
Q ss_pred cch-hhhcCCCCcEeecCCCCCCCCCCcc-cccccCCceeecCC
Q 044750 274 LPE-TLCELYNLRKLDIRRCPNLRELPAG-IGKLMNMRSLLNGQ 315 (658)
Q Consensus 274 lp~-~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~ 315 (658)
++. .+..+.+|+.+++..+ +..++.. +.+. +|+.+.+..
T Consensus 72 i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp E-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 332 4445667777766542 3333332 3333 566655543
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.61 E-value=0.15 Score=29.11 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=11.9
Q ss_pred CccceeecCCccccccchh
Q 044750 259 IHLKYLNLSELCIERLPET 277 (658)
Q Consensus 259 ~~L~~L~L~~~~i~~lp~~ 277 (658)
++|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.61 E-value=0.15 Score=29.11 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=11.9
Q ss_pred CccceeecCCccccccchh
Q 044750 259 IHLKYLNLSELCIERLPET 277 (658)
Q Consensus 259 ~~L~~L~L~~~~i~~lp~~ 277 (658)
++|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.13 E-value=0.44 Score=27.09 Aligned_cols=21 Identities=48% Similarity=0.729 Sum_probs=14.3
Q ss_pred CCCCcEeecCCCCCCCCCCccc
Q 044750 281 LYNLRKLDIRRCPNLRELPAGI 302 (658)
Q Consensus 281 L~~L~~L~L~~~~~~~~lp~~i 302 (658)
|++|++|+|++|. +..+|.+.
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 4567777777776 66676654
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.13 E-value=0.44 Score=27.09 Aligned_cols=21 Identities=48% Similarity=0.729 Sum_probs=14.3
Q ss_pred CCCCcEeecCCCCCCCCCCccc
Q 044750 281 LYNLRKLDIRRCPNLRELPAGI 302 (658)
Q Consensus 281 L~~L~~L~L~~~~~~~~lp~~i 302 (658)
|++|++|+|++|. +..+|.+.
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 4567777777776 66676654
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.04 E-value=0.017 Score=52.46 Aligned_cols=86 Identities=17% Similarity=0.108 Sum_probs=70.8
Q ss_pred ccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccc
Q 044750 196 IYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLP 275 (658)
Q Consensus 196 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp 275 (658)
+..+.+...|+++.|+. ..+..-|.-+..|..||+ +. +.+..+|..++.+..++.+++..|..+..|
T Consensus 38 i~~~kr~tvld~~s~r~----vn~~~n~s~~t~~~rl~~------sk---nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p 104 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRL----VNLGKNFSILTRLVRLDL------SK---NQIKFLPKDAKQQRETVNAASHKNNHSQQP 104 (326)
T ss_pred hhccceeeeehhhhhHH----HhhccchHHHHHHHHHhc------cH---hhHhhChhhHHHHHHHHHHHhhccchhhCC
Confidence 45677888888888763 223445667778888999 55 778899999999999999999999999999
Q ss_pred hhhhcCCCCcEeecCCCCC
Q 044750 276 ETLCELYNLRKLDIRRCPN 294 (658)
Q Consensus 276 ~~i~~L~~L~~L~L~~~~~ 294 (658)
.+++.+++++++++.++..
T Consensus 105 ~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 105 KSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred ccccccCCcchhhhccCcc
Confidence 9999999999999998873
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.06 E-value=0.64 Score=26.46 Aligned_cols=14 Identities=29% Similarity=0.786 Sum_probs=6.4
Q ss_pred CCCCeeeccCCCCc
Q 044750 596 PRLSSLEIGYCPKL 609 (658)
Q Consensus 596 ~~L~~L~l~~c~~l 609 (658)
|+|+.|+|++|+.+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 44444444444443
No 84
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=84.82 E-value=3.4 Score=34.66 Aligned_cols=112 Identities=13% Similarity=0.201 Sum_probs=55.3
Q ss_pred ceEEEEEEcCCCCC-CCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc-ccc
Q 044750 178 KVRHLGLNFEGGAP-LPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP-ENI 255 (658)
Q Consensus 178 ~~~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp-~~~ 255 (658)
.++.+.+.. .... ....|..+++|+.+.+.++-. ......|.+++.|+.+.+. +....++ ..+
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~~~----~i~~~~F~~~~~l~~i~~~----------~~~~~i~~~~F 77 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNNLT----SIGDNAFSNCKSLESITFP----------NNLKSIGDNAF 77 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESSTTS----CE-TTTTTT-TT-EEEEET----------STT-EE-TTTT
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccccc----ccceeeeeccccccccccc----------ccccccccccc
Confidence 455555543 2332 234577888999999977531 2334668889889999992 1233333 346
Q ss_pred cCCCccceeecCCccccccch-hhhcCCCCcEeecCCCCCCCCCCc-ccccccCC
Q 044750 256 GKLIHLKYLNLSELCIERLPE-TLCELYNLRKLDIRRCPNLRELPA-GIGKLMNM 308 (658)
Q Consensus 256 ~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L 308 (658)
..+.+|+.+.+..+ +..++. .+.+. +|+.+.+..+ +..++. .+.+.++|
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 67899999999765 665554 55666 8998888752 444443 34444444
No 85
>PRK04841 transcriptional regulator MalT; Provisional
Probab=84.43 E-value=5.4 Score=46.74 Aligned_cols=125 Identities=16% Similarity=0.172 Sum_probs=78.0
Q ss_pred hhhHHHHHHhhCC-HHHHHHHHhhhcCCCCHHHHHHHHhcccccccc-ccCcchHHHHh-hccCCCCCCchhhHHhhhcC
Q 044750 3 HAIVSSLLDQLKS-IAQDQVIGNLLRSKCTVKEWQRILESEMWKVEE-IRKGLLAPLLL-SYNDLPSNSMVKQCFSYCAV 79 (658)
Q Consensus 3 ~~~~~~i~~~c~g-Plai~~ig~~L~~~~~~~~W~~~~~~~~~~~~~-~~~~i~~~L~~-sY~~L~~~~~~k~cFl~~~~ 79 (658)
.+.+.++.+.|+| |+++..++..+++..... ..... .+.+ ....+...+.- -|+.||+ +.+..++..|+
T Consensus 205 ~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~l~~~v~~~l~~--~~~~~l~~~a~ 276 (903)
T PRK04841 205 AAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSAR----RLAGINASHLSDYLVEEVLDNVDL--ETRHFLLRCSV 276 (903)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhH----hhcCCCchhHHHHHHHHHHhcCCH--HHHHHHHHhcc
Confidence 3567889999999 999999998876542110 01111 1111 12235555433 4889999 89999999999
Q ss_pred CCCCceeCHHHHHHHHHHcCCcCCCcchhHHHHHHHHHHHHHhccCceeeeecCCCCeeceEEcCHHHHHHHHHhh
Q 044750 80 FPKDHYMHKKELIDMWMAQGYLNAEEDEEMEMVGEEYFNILATHSFFQEFETYGGDNEFMRCKMHDIVHDFAQFVS 155 (658)
Q Consensus 80 fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~mhdl~~d~~~~~~ 155 (658)
++. ++ ..+...-. | . +.+...+++|.+.+++.....+ .+. .++.|++++++.....
T Consensus 277 ~~~---~~-~~l~~~l~--~---~-------~~~~~~L~~l~~~~l~~~~~~~-~~~---~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 277 LRS---MN-DALIVRVT--G---E-------ENGQMRLEELERQGLFIQRMDD-SGE---WFRYHPLFASFLRHRC 332 (903)
T ss_pred ccc---CC-HHHHHHHc--C---C-------CcHHHHHHHHHHCCCeeEeecC-CCC---EEehhHHHHHHHHHHH
Confidence 873 34 23333221 1 1 1246778999999997542221 122 4778999999987654
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.39 E-value=1.3 Score=25.15 Aligned_cols=17 Identities=47% Similarity=0.575 Sum_probs=12.0
Q ss_pred ccceeecCCccccccch
Q 044750 260 HLKYLNLSELCIERLPE 276 (658)
Q Consensus 260 ~L~~L~L~~~~i~~lp~ 276 (658)
+|++|++++|.++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56777777777777764
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=77.99 E-value=0.99 Score=25.01 Aligned_cols=14 Identities=36% Similarity=0.328 Sum_probs=7.7
Q ss_pred CccceeecCCcccc
Q 044750 259 IHLKYLNLSELCIE 272 (658)
Q Consensus 259 ~~L~~L~L~~~~i~ 272 (658)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 55666666666655
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.09 E-value=3.6 Score=23.45 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=7.6
Q ss_pred CccceeecCCcccc
Q 044750 259 IHLKYLNLSELCIE 272 (658)
Q Consensus 259 ~~L~~L~L~~~~i~ 272 (658)
++|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 44555555555554
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=55.02 E-value=8.7 Score=22.25 Aligned_cols=14 Identities=29% Similarity=0.256 Sum_probs=9.0
Q ss_pred CccceeecCCcccc
Q 044750 259 IHLKYLNLSELCIE 272 (658)
Q Consensus 259 ~~L~~L~L~~~~i~ 272 (658)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35667777776654
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.83 E-value=7.6 Score=40.71 Aligned_cols=68 Identities=21% Similarity=0.172 Sum_probs=32.1
Q ss_pred CCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCcccc--CCCCcceEEEccCCCCCC
Q 044750 512 AFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLL--QSTALQELRIYFCDLLEE 583 (658)
Q Consensus 512 ~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~--~l~~L~~L~l~~c~~l~~ 583 (658)
.+|.+..+.|+++ .|..+... .......|+|++|+|++|........++. ....|++|.+.+|+..+.
T Consensus 216 n~p~i~sl~lsnN-rL~~Ld~~---sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNN-RLYHLDAL---SSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccc-hhhchhhh---hHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 6677777776665 23222210 11223466666666666622111111111 233466666666665443
No 91
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=36.01 E-value=56 Score=32.85 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=53.8
Q ss_pred hhhHHHHHHhhCC-HH-HHHHHHhhhcCCCCHHHHHHHHhcccccccccc-CcchHHHHhhccCCCCCCchhhHHh-hhc
Q 044750 3 HAIVSSLLDQLKS-IA-QDQVIGNLLRSKCTVKEWQRILESEMWKVEEIR-KGLLAPLLLSYNDLPSNSMVKQCFS-YCA 78 (658)
Q Consensus 3 ~~~~~~i~~~c~g-Pl-ai~~ig~~L~~~~~~~~W~~~~~~~~~~~~~~~-~~i~~~L~~sY~~L~~~~~~k~cFl-~~~ 78 (658)
.+.+..|++.|+| |= |...+.+ ...|..+.+.. .+.... ......+...|..|+. ..+.-+- ...
T Consensus 202 ~~~~~~ia~~~~G~pR~a~~~l~~-------~~~~a~~~~~~--~I~~~~v~~~l~~~~~~~~~l~~--~~~~~l~~~~~ 270 (328)
T PRK00080 202 EEGALEIARRSRGTPRIANRLLRR-------VRDFAQVKGDG--VITKEIADKALDMLGVDELGLDE--MDRKYLRTIIE 270 (328)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHH-------HHHHHHHcCCC--CCCHHHHHHHHHHhCCCcCCCCH--HHHHHHHHHHH
Confidence 3567889999998 82 3322221 12233221110 111111 2344556777888887 5555553 555
Q ss_pred CCCCCceeCHHHHHHHHHHcCCcCCCcchhHHHHHHHHHH-HHHhccCceee
Q 044750 79 VFPKDHYMHKKELIDMWMAQGYLNAEEDEEMEMVGEEYFN-ILATHSFFQEF 129 (658)
Q Consensus 79 ~fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~~~~-~L~~~~ll~~~ 129 (658)
.|+.+ .+..+.+.... | .. .+.++..++ .|++.+|++..
T Consensus 271 ~~~~~-~~~~~~~a~~l---g----~~----~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 271 KFGGG-PVGLDTLAAAL---G----EE----RDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HcCCC-ceeHHHHHHHH---C----CC----cchHHHHhhHHHHHcCCcccC
Confidence 66655 46666654433 1 11 123444455 78899999643
No 92
>PF05491 RuvB_C: Holliday junction DNA helicase ruvB C-terminus; InterPro: IPR008823 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the C-terminal region of the proteins; it is thought to be a helicase DNA-binding domain.; GO: 0003677 DNA binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3PFI_B 1IXR_C 1HQC_B 1IXS_B 1IN8_A 1IN4_A 1IN5_A 1J7K_A 1IN6_A 1IN7_A.
Probab=33.06 E-value=57 Score=24.39 Aligned_cols=34 Identities=9% Similarity=0.188 Sum_probs=21.8
Q ss_pred hhhHHHHHHhhCC-HHHHHHHHhhhcCCCCHHHHHHH
Q 044750 3 HAIVSSLLDQLKS-IAQDQVIGNLLRSKCTVKEWQRI 38 (658)
Q Consensus 3 ~~~~~~i~~~c~g-Plai~~ig~~L~~~~~~~~W~~~ 38 (658)
+.+-+-++++.+| |.+|.++|.+|.. +.+.-+++
T Consensus 11 ~~yL~~l~~~f~ggPvGl~tlA~~l~e--d~~Tie~v 45 (76)
T PF05491_consen 11 RRYLKTLIENFKGGPVGLDTLAAALGE--DKETIEDV 45 (76)
T ss_dssp HHHHHHHHHCSTTS-B-HHHHHHHTTS---HHHHHHT
T ss_pred HHHHHHHHHHcCCCCeeHHHHHHHHCC--CHhHHHHH
Confidence 3455667777776 9999999999955 34444444
No 93
>PF11430 EGL-1: Programmed cell death activator EGL-1; InterPro: IPR021543 Initiation of programmed cell death in C.elegans occurs by the binding of EGL-1 to CED-9 which disrupts a complex involving CED-4/CED-9 and allows CED-4 to activate CED-3, a caspase. It is the C-terminal domain of EGL-1 which is involved in the formation of the complex with CED-9. The formation of the complex induces structural rearrangements in CED-9 and EGL-1 adopts an extended alpha-helical conformation []. ; PDB: 1TY4_D.
Probab=30.57 E-value=35 Score=18.02 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=10.6
Q ss_pred hhhHHHHHHhhCC
Q 044750 3 HAIVSSLLDQLKS 15 (658)
Q Consensus 3 ~~~~~~i~~~c~g 15 (658)
++||.+++..|..
T Consensus 1 ~~IG~kla~MCDd 13 (21)
T PF11430_consen 1 HEIGTKLAAMCDD 13 (21)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 5788999988864
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.14 E-value=38 Score=35.82 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=30.8
Q ss_pred CCCccceeecCCcccc---ccchhhhcCCCCcEeecCCCCCCCCCCcccccc--cCCceeecCCcccCc
Q 044750 257 KLIHLKYLNLSELCIE---RLPETLCELYNLRKLDIRRCPNLRELPAGIGKL--MNMRSLLNGQTYSLK 320 (658)
Q Consensus 257 ~l~~L~~L~L~~~~i~---~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L--~~L~~L~l~~~~~~~ 320 (658)
+.+.+..++|++|.+. .+..-...-++|++|+|++|.+....-.++.++ ..|+.|-+.||...+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3445556666666543 222223345666666666663222222223322 245666666664443
No 95
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=24.47 E-value=1.7e+02 Score=28.90 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=35.8
Q ss_pred hHHHHhhccCCCCCCchhhHHh-hhcCCCCCceeCHHHHHHHHHHcCCcCCCcchhHHHHHHHHHH-HHHhccCceee
Q 044750 54 LAPLLLSYNDLPSNSMVKQCFS-YCAVFPKDHYMHKKELIDMWMAQGYLNAEEDEEMEMVGEEYFN-ILATHSFFQEF 129 (658)
Q Consensus 54 ~~~L~~sY~~L~~~~~~k~cFl-~~~~fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~~~~-~L~~~~ll~~~ 129 (658)
...+...|..++. +.+.-+- ..+.+.. -.+..+++.... |- ....++..++ .|++++|++..
T Consensus 226 l~~l~~~~~~l~~--~~~~~L~al~~~~~~-~~~~~~~ia~~l---g~--------~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 226 LEMLMIDELGLDE--IDRKLLSVLIEQFQG-GPVGLKTLAAAL---GE--------DADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHhCCCCCCCCH--HHHHHHHHHHHHhCC-CcccHHHHHHHh---CC--------CcchHHHhhhHHHHHcCCcccC
Confidence 3335667888888 5555444 3455543 345555544433 21 1234556677 69999999643
No 96
>KOG4062 consensus 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair [Replication, recombination and repair]
Probab=22.33 E-value=86 Score=27.10 Aligned_cols=35 Identities=9% Similarity=0.251 Sum_probs=25.3
Q ss_pred HHHHHhhCCHHHHHHHHhhhcCCC--CHHHHHHHHhc
Q 044750 7 SSLLDQLKSIAQDQVIGNLLRSKC--TVKEWQRILES 41 (658)
Q Consensus 7 ~~i~~~c~gPlai~~ig~~L~~~~--~~~~W~~~~~~ 41 (658)
.+||++-|.|-|...+|+++++.. ..--|-++..|
T Consensus 110 ~~iA~~iG~PsaaRaVg~A~~~n~la~lvPcHRVv~s 146 (178)
T KOG4062|consen 110 GQIARRIGNPSAARAVGSAMAHNNLAILVPCHRVVGS 146 (178)
T ss_pred HHHHHHhCCcHHHHHHHHHHccCCCcEEecceeeecC
Confidence 367888888999999999999872 12335555554
Done!