Query 044750
Match_columns 658
No_of_seqs 347 out of 3633
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 10:57:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044750.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044750hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.8E-33 6.2E-38 316.5 12.6 434 176-655 246-766 (768)
2 3vq2_A TLR4, TOLL-like recepto 100.0 4.8E-30 1.6E-34 282.3 25.4 418 174-631 29-532 (606)
3 3rgz_A Protein brassinosteroid 100.0 5E-30 1.7E-34 288.5 19.9 400 176-632 222-716 (768)
4 3t6q_A CD180 antigen; protein- 100.0 1.2E-29 4.1E-34 279.2 22.0 418 174-631 30-511 (606)
5 4eco_A Uncharacterized protein 100.0 2E-30 6.7E-35 285.0 15.1 390 177-631 81-598 (636)
6 2z63_A TOLL-like receptor 4, v 100.0 3.4E-29 1.2E-33 273.7 22.2 411 174-631 25-529 (570)
7 4ecn_A Leucine-rich repeat pro 100.0 1.1E-29 3.9E-34 283.3 17.3 390 177-632 323-839 (876)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-29 8.3E-34 276.7 19.7 425 176-631 55-556 (606)
9 2z7x_B TOLL-like receptor 1, v 100.0 1E-27 3.6E-32 258.5 25.6 409 176-631 20-479 (520)
10 4eco_A Uncharacterized protein 100.0 3.6E-29 1.2E-33 275.0 13.3 378 200-632 81-578 (636)
11 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-27 6E-32 258.7 26.1 420 176-631 25-508 (549)
12 4ecn_A Leucine-rich repeat pro 100.0 6.3E-29 2.2E-33 277.3 13.9 376 200-632 323-818 (876)
13 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.7E-27 5.7E-32 259.0 24.8 398 180-631 34-508 (562)
14 1ziw_A TOLL-like receptor 3; i 100.0 2E-27 6.9E-32 265.0 24.6 151 175-337 23-178 (680)
15 2z63_A TOLL-like receptor 4, v 100.0 6.6E-28 2.2E-32 263.5 19.5 404 176-611 51-533 (570)
16 3t6q_A CD180 antigen; protein- 100.0 5E-27 1.7E-31 258.3 24.1 428 176-631 56-558 (606)
17 3j0a_A TOLL-like receptor 5; m 99.9 1.6E-26 5.5E-31 262.7 26.2 416 175-631 22-558 (844)
18 1o6v_A Internalin A; bacterial 99.9 7.2E-26 2.5E-30 240.0 24.0 341 199-631 45-386 (466)
19 2z81_A CD282 antigen, TOLL-lik 99.9 4.3E-26 1.5E-30 247.7 22.3 400 183-631 11-484 (549)
20 3v47_A TOLL-like receptor 5B a 99.9 1.3E-25 4.5E-30 237.9 24.9 111 510-631 295-406 (455)
21 1ziw_A TOLL-like receptor 3; i 99.9 2.5E-25 8.5E-30 248.1 27.1 415 181-631 8-491 (680)
22 3j0a_A TOLL-like receptor 5; m 99.9 2E-25 6.9E-30 253.7 23.9 145 180-338 7-156 (844)
23 4g8a_A TOLL-like receptor 4; l 99.9 1.5E-24 5.1E-29 240.2 25.7 437 174-631 49-578 (635)
24 3o6n_A APL1; leucine-rich repe 99.9 2.7E-25 9.4E-30 230.1 18.1 305 198-631 43-350 (390)
25 2z7x_B TOLL-like receptor 1, v 99.9 1.5E-24 5.1E-29 233.8 24.6 372 175-608 43-480 (520)
26 1o6v_A Internalin A; bacterial 99.9 1.8E-24 6.2E-29 229.2 23.3 346 177-614 46-392 (466)
27 4fmz_A Internalin; leucine ric 99.9 1.9E-24 6.5E-29 220.2 21.4 304 197-631 41-344 (347)
28 2id5_A Lingo-1, leucine rich r 99.9 4.1E-24 1.4E-28 227.7 23.8 141 182-336 16-158 (477)
29 3v47_A TOLL-like receptor 5B a 99.9 2.5E-24 8.4E-29 228.1 21.0 110 512-631 273-382 (455)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.5E-23 5.1E-28 227.9 26.3 368 175-608 50-509 (562)
31 3oja_B Anopheles plasmodium-re 99.9 1.2E-24 4E-29 237.8 17.4 304 198-607 49-356 (597)
32 4fmz_A Internalin; leucine ric 99.9 1.7E-23 5.9E-28 213.1 23.0 302 176-607 43-344 (347)
33 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-23 4.5E-28 220.6 21.1 297 193-607 35-350 (457)
34 3o6n_A APL1; leucine-rich repe 99.9 1.4E-23 4.8E-28 217.3 17.6 305 176-608 44-351 (390)
35 3bz5_A Internalin-J, INLJ; leu 99.9 6E-23 2.1E-27 215.6 21.5 324 176-607 41-366 (457)
36 3oja_B Anopheles plasmodium-re 99.9 2.6E-23 9E-28 227.1 16.4 303 177-581 51-358 (597)
37 1jl5_A Outer protein YOPM; leu 99.9 1.2E-22 3.9E-27 213.3 20.5 369 176-632 10-408 (454)
38 4fcg_A Uncharacterized protein 99.9 1.6E-22 5.5E-27 203.2 19.9 92 225-326 79-170 (328)
39 4g8a_A TOLL-like receptor 4; l 99.9 6.1E-22 2.1E-26 219.2 26.4 413 187-631 41-553 (635)
40 2id5_A Lingo-1, leucine rich r 99.9 2E-22 6.8E-27 214.6 18.7 300 174-582 29-334 (477)
41 2ft3_A Biglycan; proteoglycan, 99.9 2.1E-21 7E-26 196.1 22.8 111 510-631 213-331 (332)
42 4fcg_A Uncharacterized protein 99.9 9.7E-22 3.3E-26 197.5 17.7 94 198-304 79-172 (328)
43 1ogq_A PGIP-2, polygalacturona 99.9 5.9E-22 2E-26 197.9 15.0 255 200-613 50-308 (313)
44 1jl5_A Outer protein YOPM; leu 99.9 6.3E-21 2.2E-25 200.1 22.5 335 179-631 73-427 (454)
45 1xku_A Decorin; proteoglycan, 99.9 4.5E-21 1.5E-25 193.5 20.6 291 201-630 32-329 (330)
46 1ogq_A PGIP-2, polygalacturona 99.9 3.8E-21 1.3E-25 192.0 14.1 146 177-335 50-202 (313)
47 3ogk_B Coronatine-insensitive 99.8 2.5E-23 8.7E-28 228.1 -3.4 380 198-631 110-524 (592)
48 1xku_A Decorin; proteoglycan, 99.8 3.3E-19 1.1E-23 179.8 21.6 267 227-632 31-305 (330)
49 3g06_A SSPH2 (leucine-rich rep 99.8 7.6E-19 2.6E-23 189.8 25.7 110 179-316 42-151 (622)
50 2a5y_B CED-4; apoptosis; HET: 99.8 2.9E-21 9.9E-26 207.6 4.5 142 3-159 316-472 (549)
51 2ft3_A Biglycan; proteoglycan, 99.8 7.3E-19 2.5E-23 177.4 21.9 284 178-607 34-331 (332)
52 1z7x_W Ribonuclease inhibitor; 99.8 1.2E-22 4.1E-27 215.5 -6.4 112 200-317 3-124 (461)
53 2z66_A Variable lymphocyte rec 99.8 6.3E-19 2.2E-23 175.8 19.3 70 246-316 38-111 (306)
54 2z80_A TOLL-like receptor 2, v 99.8 3E-19 1E-23 181.9 17.0 70 246-316 62-134 (353)
55 1z7x_W Ribonuclease inhibitor; 99.8 2.4E-21 8.3E-26 205.5 -2.4 391 176-630 2-437 (461)
56 2z66_A Variable lymphocyte rec 99.8 6.5E-19 2.2E-23 175.7 15.1 140 181-335 11-155 (306)
57 3zyi_A Leucine-rich repeat-con 99.8 3E-18 1E-22 180.6 21.0 99 227-335 75-176 (452)
58 3zyj_A Leucine-rich repeat-con 99.8 4.2E-18 1.4E-22 178.9 21.1 64 510-580 227-291 (440)
59 3ogk_B Coronatine-insensitive 99.8 2.1E-20 7.2E-25 204.9 3.7 406 176-630 111-548 (592)
60 3zyj_A Leucine-rich repeat-con 99.8 5.8E-18 2E-22 177.8 21.3 234 246-631 53-290 (440)
61 2p1m_B Transport inhibitor res 99.8 2.2E-21 7.5E-26 212.9 -7.9 116 512-632 395-518 (594)
62 3zyi_A Leucine-rich repeat-con 99.8 1.1E-17 3.7E-22 176.4 20.3 234 246-631 64-301 (452)
63 2p1m_B Transport inhibitor res 99.8 3.9E-21 1.3E-25 210.9 -7.5 403 176-630 104-541 (594)
64 1ozn_A Reticulon 4 receptor; N 99.8 2.8E-18 9.5E-23 169.1 12.1 100 227-335 32-134 (285)
65 3o53_A Protein LRIM1, AGAP0063 99.7 4.3E-19 1.5E-23 177.6 5.0 110 512-635 167-277 (317)
66 3o53_A Protein LRIM1, AGAP0063 99.7 4.3E-19 1.5E-23 177.6 3.3 90 512-613 189-279 (317)
67 1ozn_A Reticulon 4 receptor; N 99.7 5.5E-17 1.9E-21 159.8 17.9 214 246-608 21-237 (285)
68 2z80_A TOLL-like receptor 2, v 99.7 1E-17 3.5E-22 170.5 11.2 264 182-481 36-312 (353)
69 3oja_A Leucine-rich immune mol 99.7 6.7E-18 2.3E-22 178.9 8.7 99 200-318 34-132 (487)
70 3g06_A SSPH2 (leucine-rich rep 99.7 1.9E-15 6.4E-20 163.4 25.6 127 176-335 60-186 (622)
71 1wwl_A Monocyte differentiatio 99.7 7.3E-18 2.5E-22 168.2 4.8 109 511-631 198-307 (312)
72 3oja_A Leucine-rich immune mol 99.7 2.4E-17 8.3E-22 174.6 6.8 102 512-627 167-269 (487)
73 2xwt_C Thyrotropin receptor; s 99.7 4.7E-16 1.6E-20 148.7 13.8 65 248-315 23-89 (239)
74 2z62_A TOLL-like receptor 4, v 99.7 1.5E-15 5.1E-20 148.7 16.0 212 246-607 17-235 (276)
75 3rfs_A Internalin B, repeat mo 99.6 4.1E-15 1.4E-19 145.1 15.1 70 540-620 177-246 (272)
76 2o6q_A Variable lymphocyte rec 99.6 2.8E-14 9.5E-19 139.0 20.5 87 510-607 129-216 (270)
77 1wwl_A Monocyte differentiatio 99.6 3.2E-17 1.1E-21 163.6 -0.5 238 184-481 50-307 (312)
78 1p9a_G Platelet glycoprotein I 99.6 1.3E-14 4.5E-19 142.6 18.0 39 541-580 169-207 (290)
79 2z62_A TOLL-like receptor 4, v 99.6 1.9E-15 6.5E-20 148.0 11.2 124 200-336 28-155 (276)
80 2xwt_C Thyrotropin receptor; s 99.6 8.3E-15 2.8E-19 140.0 15.0 79 228-316 32-115 (239)
81 4ay9_X Follicle-stimulating ho 99.6 1.1E-14 3.6E-19 147.8 16.6 80 542-629 175-255 (350)
82 2ast_B S-phase kinase-associat 99.6 2.6E-16 9E-21 159.1 3.7 81 227-316 70-152 (336)
83 1p9a_G Platelet glycoprotein I 99.6 3.6E-14 1.2E-18 139.4 16.3 141 178-335 11-153 (290)
84 2ast_B S-phase kinase-associat 99.6 3.4E-16 1.1E-20 158.3 1.8 98 228-336 48-148 (336)
85 4ay9_X Follicle-stimulating ho 99.6 6.2E-14 2.1E-18 142.1 18.4 89 246-336 19-110 (350)
86 2ca6_A RAN GTPase-activating p 99.6 8.6E-17 2.9E-21 165.9 -2.9 115 510-630 212-340 (386)
87 3sfz_A APAF-1, apoptotic pepti 99.6 4.2E-15 1.4E-19 177.4 10.6 137 3-158 307-452 (1249)
88 1vt4_I APAF-1 related killer D 99.6 3.7E-15 1.3E-19 162.9 8.2 111 13-151 323-436 (1221)
89 1h6u_A Internalin H; cell adhe 99.5 1.2E-14 3.9E-19 144.5 10.7 121 196-336 37-157 (308)
90 2o6q_A Variable lymphocyte rec 99.5 3.5E-14 1.2E-18 138.3 13.7 142 180-336 19-163 (270)
91 1h6u_A Internalin H; cell adhe 99.5 1.7E-13 5.7E-18 136.1 17.0 189 176-398 40-228 (308)
92 4ezg_A Putative uncharacterize 99.5 2.7E-13 9.3E-18 125.1 13.2 144 176-337 43-188 (197)
93 2ca6_A RAN GTPase-activating p 99.5 1.3E-15 4.5E-20 157.0 -3.1 259 192-461 24-316 (386)
94 3rfs_A Internalin B, repeat mo 99.5 7.2E-13 2.4E-17 129.1 15.5 173 426-631 42-216 (272)
95 3m19_A Variable lymphocyte rec 99.5 4.2E-13 1.4E-17 129.1 13.2 148 176-336 34-185 (251)
96 4ezg_A Putative uncharacterize 99.5 5E-13 1.7E-17 123.2 13.0 109 510-631 84-192 (197)
97 3goz_A Leucine-rich repeat-con 99.4 3.9E-15 1.3E-19 151.8 -1.9 91 512-609 193-297 (362)
98 4glp_A Monocyte differentiatio 99.4 3.3E-13 1.1E-17 134.3 12.0 67 250-316 106-179 (310)
99 4glp_A Monocyte differentiatio 99.4 2.2E-13 7.4E-18 135.7 10.7 107 198-316 89-207 (310)
100 2v9t_B SLIT homolog 2 protein 99.4 5.9E-13 2E-17 125.0 12.3 142 181-336 15-158 (220)
101 3e6j_A Variable lymphocyte rec 99.4 8.1E-13 2.8E-17 124.9 12.9 140 181-336 23-165 (229)
102 3m19_A Variable lymphocyte rec 99.4 7.9E-13 2.7E-17 127.1 13.0 143 179-337 16-162 (251)
103 1z6t_A APAF-1, apoptotic prote 99.4 3.6E-13 1.2E-17 146.9 10.5 134 3-155 307-449 (591)
104 2v70_A SLIT-2, SLIT homolog 2 99.4 1.6E-12 5.3E-17 122.1 12.9 144 181-337 15-160 (220)
105 2ell_A Acidic leucine-rich nuc 99.4 7.1E-13 2.4E-17 118.8 9.1 62 254-316 66-130 (168)
106 1h6t_A Internalin B; cell adhe 99.4 3.5E-12 1.2E-16 125.3 14.6 140 176-336 45-184 (291)
107 3cvr_A Invasion plasmid antige 99.4 3.8E-12 1.3E-16 135.8 15.1 38 547-585 210-247 (571)
108 2o6s_A Variable lymphocyte rec 99.4 3.5E-12 1.2E-16 118.8 11.7 127 177-316 28-158 (208)
109 2ell_A Acidic leucine-rich nuc 99.3 3E-12 1E-16 114.7 10.6 133 176-324 23-164 (168)
110 3e6j_A Variable lymphocyte rec 99.3 5.2E-12 1.8E-16 119.4 12.7 132 174-318 37-171 (229)
111 1h6t_A Internalin B; cell adhe 99.3 9.6E-12 3.3E-16 122.2 14.5 145 175-340 66-210 (291)
112 2je0_A Acidic leucine-rich nuc 99.3 1.5E-12 5.3E-17 114.0 7.6 125 199-337 16-147 (149)
113 4b8c_D Glucose-repressible alc 99.3 3.2E-12 1.1E-16 141.7 11.3 151 176-337 172-323 (727)
114 2v70_A SLIT-2, SLIT homolog 2 99.3 5.4E-12 1.8E-16 118.4 10.9 133 175-319 30-166 (220)
115 2o6s_A Variable lymphocyte rec 99.3 1.3E-11 4.5E-16 114.8 13.2 140 181-336 11-154 (208)
116 2je0_A Acidic leucine-rich nuc 99.3 2.3E-12 7.8E-17 112.9 7.4 124 176-314 16-148 (149)
117 1a9n_A U2A', U2A'; complex (nu 99.3 4.7E-12 1.6E-16 114.3 9.6 128 195-338 14-148 (176)
118 2v9t_B SLIT homolog 2 protein 99.3 7.8E-12 2.7E-16 117.3 11.3 131 175-318 30-164 (220)
119 1xeu_A Internalin C; cellular 99.3 1.3E-11 4.3E-16 119.3 12.8 142 176-339 40-181 (263)
120 1m9s_A Internalin B; cell inva 99.3 1.1E-11 3.6E-16 133.9 12.9 140 176-336 64-203 (605)
121 3cvr_A Invasion plasmid antige 99.3 3.5E-11 1.2E-15 128.3 16.2 127 178-336 60-186 (571)
122 3goz_A Leucine-rich repeat-con 99.3 5.4E-13 1.8E-17 135.9 1.0 107 198-317 20-149 (362)
123 1a9n_A U2A', U2A'; complex (nu 99.2 1.3E-11 4.4E-16 111.5 8.2 127 176-317 18-151 (176)
124 1w8a_A SLIT protein; signaling 99.2 2.3E-11 7.8E-16 111.4 9.9 125 180-318 11-138 (192)
125 1m9s_A Internalin B; cell inva 99.2 4.3E-11 1.5E-15 129.2 13.3 165 176-368 42-206 (605)
126 1xeu_A Internalin C; cellular 99.2 2.4E-11 8E-16 117.4 10.0 121 195-336 36-156 (263)
127 2xot_A Amphoterin-induced prot 99.2 9.8E-12 3.4E-16 126.4 7.7 62 255-316 84-146 (361)
128 4b8c_D Glucose-repressible alc 99.2 1.6E-11 5.4E-16 136.1 7.9 121 192-326 216-336 (727)
129 1dce_A Protein (RAB geranylger 99.2 4.8E-11 1.6E-15 128.0 10.6 98 228-337 442-540 (567)
130 2wfh_A SLIT homolog 2 protein 99.2 1.2E-10 4E-15 106.6 11.6 119 182-316 15-136 (193)
131 2o6r_A Variable lymphocyte rec 99.2 1.1E-10 3.8E-15 105.4 10.9 123 181-318 11-136 (177)
132 2xot_A Amphoterin-induced prot 99.2 7.6E-11 2.6E-15 119.8 10.9 144 174-331 36-188 (361)
133 1w8a_A SLIT protein; signaling 99.1 1.1E-10 3.7E-15 106.9 9.9 119 203-336 11-132 (192)
134 1ds9_A Outer arm dynein; leuci 99.1 1.1E-12 3.6E-17 121.2 -5.1 133 188-336 36-180 (198)
135 2wfh_A SLIT homolog 2 protein 99.1 3E-10 1E-14 103.8 10.7 117 203-336 13-132 (193)
136 1dce_A Protein (RAB geranylger 99.1 2.9E-10 9.9E-15 121.9 9.9 119 200-335 441-565 (567)
137 2r9u_A Variable lymphocyte rec 99.0 1.2E-09 4.1E-14 98.0 8.3 99 203-317 15-116 (174)
138 2r9u_A Variable lymphocyte rec 98.9 2.7E-09 9.3E-14 95.6 9.8 87 246-336 22-111 (174)
139 1ds9_A Outer arm dynein; leuci 98.9 5E-11 1.7E-15 109.9 -2.7 121 201-336 24-146 (198)
140 2o6r_A Variable lymphocyte rec 98.9 6.4E-09 2.2E-13 93.7 10.9 119 202-337 9-131 (177)
141 3sb4_A Hypothetical leucine ri 98.9 8.4E-09 2.9E-13 103.2 11.7 80 510-602 246-327 (329)
142 3g39_A Variable lymphocyte rec 98.9 3.9E-09 1.4E-13 94.2 8.2 101 202-318 11-114 (170)
143 3g39_A Variable lymphocyte rec 98.8 1E-08 3.6E-13 91.4 8.8 96 229-337 11-109 (170)
144 3sb4_A Hypothetical leucine ri 98.8 1.3E-08 4.3E-13 101.9 9.0 102 512-627 224-328 (329)
145 4fs7_A Uncharacterized protein 98.7 3.4E-07 1.2E-11 94.0 18.3 124 194-336 65-191 (394)
146 4fdw_A Leucine rich hypothetic 98.7 1.5E-06 5.1E-11 88.8 22.2 98 539-648 295-394 (401)
147 4fdw_A Leucine rich hypothetic 98.5 5.3E-06 1.8E-10 84.8 18.8 119 198-336 111-232 (401)
148 2ifg_A High affinity nerve gro 98.5 1.9E-07 6.5E-12 94.1 7.8 89 219-317 24-114 (347)
149 2ifg_A High affinity nerve gro 98.4 4.2E-07 1.4E-11 91.6 9.3 99 182-293 13-114 (347)
150 4fs7_A Uncharacterized protein 98.2 2.7E-05 9.2E-10 79.7 16.2 140 176-336 70-214 (394)
151 3e4g_A ATP synthase subunit S, 98.2 9.2E-07 3.1E-11 77.6 3.7 67 565-634 82-153 (176)
152 3e4g_A ATP synthase subunit S, 98.1 4.3E-06 1.5E-10 73.3 7.3 99 192-297 53-154 (176)
153 2ra8_A Uncharacterized protein 98.1 9.3E-07 3.2E-11 88.6 3.4 92 512-607 217-318 (362)
154 3un9_A NLR family member X1; l 98.1 9.9E-08 3.4E-12 96.6 -4.6 133 178-317 73-222 (372)
155 3un9_A NLR family member X1; l 98.0 1.1E-06 3.6E-11 89.0 2.0 138 176-318 100-251 (372)
156 4gt6_A Cell surface protein; l 98.0 0.00023 7.7E-09 72.8 19.2 110 194-316 57-170 (394)
157 4gt6_A Cell surface protein; l 98.0 4.1E-05 1.4E-09 78.4 12.3 142 179-335 66-210 (394)
158 3rw6_A Nuclear RNA export fact 97.8 2.4E-06 8.2E-11 81.1 -0.2 78 257-336 168-257 (267)
159 2ra8_A Uncharacterized protein 97.8 3.3E-05 1.1E-09 77.3 7.3 58 258-316 251-317 (362)
160 1io0_A Tropomodulin; LRR prote 97.7 8.1E-06 2.8E-10 73.6 2.1 117 195-316 31-161 (185)
161 1io0_A Tropomodulin; LRR prote 97.7 6.1E-06 2.1E-10 74.4 0.4 94 220-317 29-134 (185)
162 3rw6_A Nuclear RNA export fact 97.6 4.2E-05 1.4E-09 72.5 5.0 80 224-313 167-258 (267)
163 4h09_A Hypothetical leucine ri 97.5 0.0054 1.9E-07 62.0 19.7 81 512-605 261-342 (379)
164 4h09_A Hypothetical leucine ri 97.0 0.024 8E-07 57.3 17.3 105 510-629 236-342 (379)
165 3rfe_A Platelet glycoprotein I 93.9 0.077 2.6E-06 43.9 5.4 34 260-293 32-66 (130)
166 1pgv_A TMD-1, tropomodulin TMD 93.3 0.049 1.7E-06 48.5 3.3 43 251-293 62-109 (197)
167 3rfe_A Platelet glycoprotein I 93.2 0.11 3.9E-06 42.8 5.3 53 262-317 11-66 (130)
168 1pgv_A TMD-1, tropomodulin TMD 89.7 0.17 5.7E-06 45.0 2.7 117 196-316 37-167 (197)
169 2qen_A Walker-type ATPase; unk 70.7 12 0.00041 36.4 8.4 119 4-151 226-348 (350)
170 2fna_A Conserved hypothetical 65.0 20 0.00069 34.8 8.8 116 7-150 233-355 (357)
171 1w5s_A Origin recognition comp 50.3 17 0.00057 36.4 5.3 111 3-130 239-372 (412)
172 1hqc_A RUVB; extended AAA-ATPa 24.5 41 0.0014 32.1 3.0 35 94-128 288-324 (324)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-33 Score=316.54 Aligned_cols=434 Identities=18% Similarity=0.149 Sum_probs=235.1
Q ss_pred CCceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccC-CCcccEEEEccccCCCCCCcccccccccc
Q 044750 176 GDKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSK-LACLRALVIRQLSSFSHPSPNFIREIPEN 254 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~ 254 (658)
..+++.+.+.++.+....+.. .+++|+.|++.+|... +..+..+.. +++|++|++ ++ +...+.+|..
T Consensus 246 l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~---~~ip~~~~~~~~~L~~L~L------s~--n~l~~~~p~~ 313 (768)
T 3rgz_A 246 CTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFT---GEIPDFLSGACDTLTGLDL------SG--NHFYGAVPPF 313 (768)
T ss_dssp CSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEE---ESCCCCSCTTCTTCSEEEC------CS--SEEEECCCGG
T ss_pred CCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccC---CccCHHHHhhcCcCCEEEC------cC--CcCCCccchH
Confidence 345666666666543211111 5566666666655422 122333322 355666665 22 1222244555
Q ss_pred ccCCCccceeecCCcccc-ccchh-hhcCCCCcEeecCCCCCCCCCCccccccc-CCceeecC-----------------
Q 044750 255 IGKLIHLKYLNLSELCIE-RLPET-LCELYNLRKLDIRRCPNLRELPAGIGKLM-NMRSLLNG----------------- 314 (658)
Q Consensus 255 ~~~l~~L~~L~L~~~~i~-~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~-~L~~L~l~----------------- 314 (658)
++++++|++|++++|.+. .+|.. ++++++|++|++++|.....+|..+..++ +|+.|+++
T Consensus 314 ~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 555555555555555554 45543 55555555555555543334555554444 44444444
Q ss_pred ---------CcccCccCcCcCCCCCCCCccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCc
Q 044750 315 ---------QTYSLKYMPIGISKLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHN 385 (658)
Q Consensus 315 ---------~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~ 385 (658)
+|.....+|..++.+++|+.|++... ...+..+..+ ..+++|+.+.+.... +....+..+..
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l---~~l~~L~~L~L~~n~----l~~~~p~~~~~ 464 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN--YLSGTIPSSL---GSLSKLRDLKLWLNM----LEGEIPQELMY 464 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS--EEESCCCGGG---GGCTTCCEEECCSSC----CCSCCCGGGGG
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCC--cccCcccHHH---hcCCCCCEEECCCCc----ccCcCCHHHcC
Confidence 44333344444555555555542211 1111112222 223333333333321 11122233555
Q ss_pred ccCCCceEEEecCccCCCCcccccCchhHHHHhhhcCCCCCCceEEEeeeCCC-CCChhhhcccccceEEeeCCCCCCCC
Q 044750 386 MENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLNVEELQICFYGGD-IFPKWLTSLTYLRELNLWFCFNCEHL 464 (658)
Q Consensus 386 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~l 464 (658)
+++|+.|+++++.+.. ..+..+..+++|+.|++.++... .+|.++..+++|++|++++|...+.+
T Consensus 465 l~~L~~L~L~~N~l~~--------------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 465 VKTLETLILDFNDLTG--------------EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp CTTCCEEECCSSCCCS--------------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred CCCceEEEecCCcccC--------------cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC
Confidence 6667777776665211 12234455678888888887765 56888888888888888888776555
Q ss_pred C-CCCCcc-ccceeccccccceEeCccccCCCCCCC--------------------------------------------
Q 044750 465 P-PLGKLP-LEKLQLYILKSVKRVGNEFLGIEESSE-------------------------------------------- 498 (658)
Q Consensus 465 ~-~~~~lp-L~~L~l~~~~~l~~~~~~~~~~~~~~~-------------------------------------------- 498 (658)
| .++.++ |+.|+++++.....++..+........
T Consensus 531 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (768)
T 3rgz_A 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGT
T ss_pred CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccc
Confidence 5 366777 888888766533222221111000000
Q ss_pred ------CCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcce
Q 044750 499 ------DDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQE 572 (658)
Q Consensus 499 ------~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~ 572 (658)
...-.+.+|..+..+++|+.|+++++ ...+..|..++.+++|+.|+|++|...+.+|..++++++|+.
T Consensus 611 ~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N------~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~ 684 (768)
T 3rgz_A 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN------MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684 (768)
T ss_dssp CCSCTTSCEEEEECCCSCSSSBCCCEEECCSS------CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cccccccceecccCchhhhccccccEEECcCC------cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence 00001223455667788888888887 333344677888888999999888777788888888889999
Q ss_pred EEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCCCCCCCCCccEEEEecChhHH----HhhcCCCCCCcccc
Q 044750 573 LRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCPLLE----NRYREGEGEDWHKI 648 (658)
Q Consensus 573 L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~----~~~~~~~~~~~~~i 648 (658)
|+|++|.....+| ..+..+++|++|++++|+....+|... .+.++....+.+||.+. ..|..+.+++|++|
T Consensus 685 LdLs~N~l~g~ip----~~l~~l~~L~~L~ls~N~l~g~iP~~~-~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~ 759 (768)
T 3rgz_A 685 LDLSSNKLDGRIP----QAMSALTMLTEIDLSNNNLSGPIPEMG-QFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHH 759 (768)
T ss_dssp EECCSSCCEECCC----GGGGGCCCCSEEECCSSEEEEECCSSS-SGGGSCGGGGCSCTEEESTTSCCCCSCC-------
T ss_pred EECCCCcccCcCC----hHHhCCCCCCEEECcCCcccccCCCch-hhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCC
Confidence 9999888877888 477888889999999887666777642 23344444455665332 26899999999999
Q ss_pred cCcCceE
Q 044750 649 SHIPYIE 655 (658)
Q Consensus 649 ~~~~~~~ 655 (658)
+|+|.+.
T Consensus 760 ~~~~~~~ 766 (768)
T 3rgz_A 760 QRSHHHH 766 (768)
T ss_dssp -------
T ss_pred CCccccC
Confidence 9999875
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=4.8e-30 Score=282.33 Aligned_cols=418 Identities=18% Similarity=0.116 Sum_probs=249.9
Q ss_pred cCCCceEEEEEEcCCCCCCCc-cccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccc-
Q 044750 174 SFGDKVRHLGLNFEGGAPLPM-SIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREI- 251 (658)
Q Consensus 174 ~~~~~~~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~l- 251 (658)
..+..++.++++++.+..++. .+.++++|++|++++|... ...+..|.++++|++|++ ++ +.+..+
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~i~~~~~~~l~~L~~L~L------s~---n~l~~~~ 96 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE---TIEDKAWHGLHHLSNLIL------TG---NPIQSFS 96 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEEC------TT---CCCCCCC
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc---ccCHHHhhchhhcCEeEC------CC---CcccccC
Confidence 346789999999998877554 6889999999999999754 455677899999999999 44 556665
Q ss_pred cccccCCCccceeecCCccccccc-hhhhcCCCCcEeecCCCCCCC-CCCcccccccCCceeecCCcccCccCcCcCCCC
Q 044750 252 PENIGKLIHLKYLNLSELCIERLP-ETLCELYNLRKLDIRRCPNLR-ELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKL 329 (658)
Q Consensus 252 p~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l 329 (658)
|..++++++|++|++++|.++.+| ..++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 176 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHH
T ss_pred hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhh
Confidence 788999999999999999998776 679999999999999998443 579999999999999999996555556667666
Q ss_pred CCCCc-cCceeeccCCCCCccccccccccCcccCCceecCcc--------------------------------------
Q 044750 330 TSLRT-LEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLS-------------------------------------- 370 (658)
Q Consensus 330 ~~L~~-L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~-------------------------------------- 370 (658)
++|+. +.......+.....+...... .+|+.+.+.+..
T Consensus 177 ~~L~~~l~~L~l~~n~l~~~~~~~~~~---~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~ 253 (606)
T 3vq2_A 177 RENPQVNLSLDMSLNPIDFIQDQAFQG---IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253 (606)
T ss_dssp HHCTTCCCEEECTTCCCCEECTTTTTT---CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGG
T ss_pred hccccccceeeccCCCcceeCcccccC---ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChH
Confidence 66652 110111111111111100000 012222221110
Q ss_pred ----------------CCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHHHhhhcCCCCCCceEEEee
Q 044750 371 ----------------NVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLNVEELQICF 434 (658)
Q Consensus 371 ----------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 434 (658)
........... +..+++|+.+++.++.... + ..+...++++.|.+.+
T Consensus 254 ~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~---------------l-~~l~~~~~L~~L~l~~ 316 (606)
T 3vq2_A 254 IMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY---------------L-EDVPKHFKWQSLSIIR 316 (606)
T ss_dssp GGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC---------------C-CCCCTTCCCSEEEEES
T ss_pred HhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh---------------h-hhccccccCCEEEccc
Confidence 00111111112 5566777777777665211 1 1344566788888888
Q ss_pred eCCCCCChhhhcccccceEEeeCCCCCCCCCCCCCcc-ccceeccccccceEe--CccccCCCCC---CCCCCCCCCCCC
Q 044750 435 YGGDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLP-LEKLQLYILKSVKRV--GNEFLGIEES---SEDDPSSSSSSS 508 (658)
Q Consensus 435 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lp-L~~L~l~~~~~l~~~--~~~~~~~~~~---~~~~~~~~~~~~ 508 (658)
+....+|.+ .+++|++|++++|...... .++.+| |+.|+++++..-... ...+...... .........++.
T Consensus 317 n~l~~lp~~--~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 393 (606)
T 3vq2_A 317 CQLKQFPTL--DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA 393 (606)
T ss_dssp CCCSSCCCC--CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECC
T ss_pred ccCcccccC--CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchh
Confidence 777777744 7778888888877544433 344566 777776654321110 1111111100 011111111223
Q ss_pred cccCCCCcceeeecCCcccccc--------------------ccccccccccCcCcccceeeeeCCCCCC-CCCccccCC
Q 044750 509 SVTAFPKLKSLDIGGMEELEEW--------------------NYRITRKENISIMPRLSSLWIRGCPKLK-ALPDYLLQS 567 (658)
Q Consensus 509 ~~~~~~~L~~L~L~~~~~L~~~--------------------~~~~~~~~~~~~~~~L~~L~L~~c~~l~-~lp~~~~~l 567 (658)
.+..+++|++|+++++. +... ......+..+..+++|++|++++|.... .+|..+..+
T Consensus 394 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472 (606)
T ss_dssp CCTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hccCCCCCCeeECCCCc-cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC
Confidence 33344444444444431 1110 1111123345566666666666664433 245566666
Q ss_pred CCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCCCCCCCCCccEEEEecCh
Q 044750 568 TALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 568 ~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 631 (658)
++|++|++++|......| ..+..+++|++|++++|+.....|..+..+++|+.|++++|.
T Consensus 473 ~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISW----GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp TTCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred CCCCEEECCCCcCCccCh----hhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 777777777765544444 345667777777777776444456677777777777777774
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=5e-30 Score=288.52 Aligned_cols=400 Identities=19% Similarity=0.128 Sum_probs=280.5
Q ss_pred CCceEEEEEEcCCCCC-CCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccccc
Q 044750 176 GDKVRHLGLNFEGGAP-LPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPEN 254 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~ 254 (658)
...++.+.+.++.+.. .+..+..+++|+.|++++|... ...+.. .+++|++|++ ++ +...+.+|..
T Consensus 222 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~~~~--~l~~L~~L~L------~~--n~l~~~ip~~ 288 (768)
T 3rgz_A 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV---GPIPPL--PLKSLQYLSL------AE--NKFTGEIPDF 288 (768)
T ss_dssp CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCE---ESCCCC--CCTTCCEEEC------CS--SEEEESCCCC
T ss_pred CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCccc---CccCcc--ccCCCCEEEC------cC--CccCCccCHH
Confidence 4678999999998864 5677889999999999999753 222322 8899999999 43 2333478888
Q ss_pred ccCC-CccceeecCCcccc-ccchhhhcCCCCcEeecCCCCCCCCCCcc-cccccCCceeecCCcccCccCcCcCCCCC-
Q 044750 255 IGKL-IHLKYLNLSELCIE-RLPETLCELYNLRKLDIRRCPNLRELPAG-IGKLMNMRSLLNGQTYSLKYMPIGISKLT- 330 (658)
Q Consensus 255 ~~~l-~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l~- 330 (658)
+..+ ++|++|++++|.++ .+|..++++++|++|++++|...+.+|.. +..+++|++|++++|.....+|..+..++
T Consensus 289 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 368 (768)
T 3rgz_A 289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368 (768)
T ss_dssp SCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTT
T ss_pred HHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhc
Confidence 8775 99999999999998 88999999999999999999855588877 89999999999999977668888887776
Q ss_pred CCCccCceeeccCCCCCccccc-----------------------cccccCcccCCceecCccCCCChhhHhhcccCccc
Q 044750 331 SLRTLEKFVVGGGVDGGSTCRL-----------------------ESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNME 387 (658)
Q Consensus 331 ~L~~L~~~~~~~~~~~~~~~~~-----------------------~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~ 387 (658)
+|++|++...... +..+..+ ..+.++++|+.+.+.... +....+..+..++
T Consensus 369 ~L~~L~Ls~N~l~--~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~----l~~~~p~~l~~l~ 442 (768)
T 3rgz_A 369 SLLTLDLSSNNFS--GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY----LSGTIPSSLGSLS 442 (768)
T ss_dssp TCSEEECCSSEEE--EECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE----EESCCCGGGGGCT
T ss_pred CCcEEEccCCCcC--CCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc----ccCcccHHHhcCC
Confidence 8888764322111 0001111 112222223332222211 1111122344445
Q ss_pred CCCceEEEecCccCCCCcccccCchhHHHHhhhcCCCCCCceEEEeeeCCC-CCChhhhcccccceEEeeCCCCCCCCCC
Q 044750 388 NLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLNVEELQICFYGGD-IFPKWLTSLTYLRELNLWFCFNCEHLPP 466 (658)
Q Consensus 388 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~l~~ 466 (658)
+|+.|+++.+.... ..+..+...++|+.|.+.++... .+|.++..+++|++|++++|...+.+|.
T Consensus 443 ~L~~L~L~~n~l~~--------------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 508 (768)
T 3rgz_A 443 KLRDLKLWLNMLEG--------------EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508 (768)
T ss_dssp TCCEEECCSSCCCS--------------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred CCCEEECCCCcccC--------------cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence 55555555444110 11223344566777777766554 4566667777777777777766554443
Q ss_pred -CCCcc-ccceeccccccceEeCccccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccc-------------
Q 044750 467 -LGKLP-LEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWN------------- 531 (658)
Q Consensus 467 -~~~lp-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~------------- 531 (658)
++.++ |+.|++.++.... .+|..+..+++|+.|++++|+--..+.
T Consensus 509 ~~~~l~~L~~L~L~~N~l~~--------------------~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 509 WIGRLENLAILKLSNNSFSG--------------------NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEE--------------------ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred HHhcCCCCCEEECCCCcccC--------------------cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 55666 7777776654322 234456678888888888763211111
Q ss_pred ---------------------------------------------------cccccccccCcCcccceeeeeCCCCCCCC
Q 044750 532 ---------------------------------------------------YRITRKENISIMPRLSSLWIRGCPKLKAL 560 (658)
Q Consensus 532 ---------------------------------------------------~~~~~~~~~~~~~~L~~L~L~~c~~l~~l 560 (658)
..+..+..+..+++|+.|++++|...+.+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 01112345567899999999999777799
Q ss_pred CccccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCCCCCCCCCccEEEEecChh
Q 044750 561 PDYLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCPL 632 (658)
Q Consensus 561 p~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~ 632 (658)
|..++++++|+.|++++|.....+| ..++.+++|+.|++++|.....+|..+..+++|+.|++++|+-
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip----~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIP----DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCC----GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred CHHHhccccCCEEeCcCCccCCCCC----hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 9999999999999999999988999 5889999999999999987779999999999999999999964
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.2e-29 Score=279.17 Aligned_cols=418 Identities=14% Similarity=0.063 Sum_probs=248.0
Q ss_pred cCCCceEEEEEEcCCCCCC-CccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccc-c
Q 044750 174 SFGDKVRHLGLNFEGGAPL-PMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIRE-I 251 (658)
Q Consensus 174 ~~~~~~~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~-l 251 (658)
..+..+++++++++.+..+ +..+.++++|++|++++|... ...+..|.++++|++|++ ++ +.+.. .
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L------s~---n~l~~~~ 97 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY---WIHEDTFQSQHRLDTLVL------TA---NPLIFMA 97 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC---EECTTTTTTCTTCCEEEC------TT---CCCSEEC
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc---eeChhhccCccccCeeeC------CC---CcccccC
Confidence 4467899999999998875 557889999999999999754 455778999999999999 44 44444 4
Q ss_pred cccccCCCccceeecCCcccccc-chhhhcCCCCcEeecCCCCCCCCC-CcccccccCCceeecCCcccCccCcCcCCCC
Q 044750 252 PENIGKLIHLKYLNLSELCIERL-PETLCELYNLRKLDIRRCPNLREL-PAGIGKLMNMRSLLNGQTYSLKYMPIGISKL 329 (658)
Q Consensus 252 p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l 329 (658)
|..++++++|++|++++|.++.+ |..++++++|++|++++|. +..+ ++.+..+++|++|++++|......|..++.+
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred hhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhh
Confidence 67899999999999999999976 5688999999999999998 5443 2345559999999999996555556667888
Q ss_pred CCCCccCceeeccCCCCCccccccccccCc-------------------------------------------------c
Q 044750 330 TSLRTLEKFVVGGGVDGGSTCRLESLKNLQ-------------------------------------------------L 360 (658)
Q Consensus 330 ~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~-------------------------------------------------~ 360 (658)
++|+.+.+...++......+..+.. ..++ .
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~ 255 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred cccceeEEecCCCccCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence 8888443222222221111111110 0000 1
Q ss_pred cCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHHHhhhcCCCCCCceEEEeeeCCCCC
Q 044750 361 LRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLNVEELQICFYGGDIF 440 (658)
Q Consensus 361 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 440 (658)
|+.+.+.+. .+.......+..+++|+.|+++++.+. .++..+...++|+.|.+.++....+
T Consensus 256 L~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------~lp~~l~~l~~L~~L~l~~n~l~~~ 316 (606)
T 3t6q_A 256 VESINLQKH----YFFNISSNTFHCFSGLQELDLTATHLS---------------ELPSGLVGLSTLKKLVLSANKFENL 316 (606)
T ss_dssp EEEEECTTC----CCSSCCTTTTTTCTTCSEEECTTSCCS---------------CCCSSCCSCTTCCEEECTTCCCSBG
T ss_pred eeEEEeecC----ccCccCHHHhccccCCCEEeccCCccC---------------CCChhhcccccCCEEECccCCcCcC
Confidence 111111110 111111223556677777777766521 1223344456667777766655443
Q ss_pred -ChhhhcccccceEEeeCCCCCCCCCC--CCCcc-ccceeccccccceEe--CccccCCCCCC---CCCCCC-CCCCCcc
Q 044750 441 -PKWLTSLTYLRELNLWFCFNCEHLPP--LGKLP-LEKLQLYILKSVKRV--GNEFLGIEESS---EDDPSS-SSSSSSV 510 (658)
Q Consensus 441 -p~~~~~l~~L~~L~l~~~~~~~~l~~--~~~lp-L~~L~l~~~~~l~~~--~~~~~~~~~~~---~~~~~~-~~~~~~~ 510 (658)
|..+..+++|++|++++|.....++. ++.++ |+.|+++++...... ...+....... ...... ...+..+
T Consensus 317 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 396 (606)
T 3t6q_A 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396 (606)
T ss_dssp GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT
T ss_pred chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh
Confidence 34555666777777776655443332 45566 666666655432222 11111111110 000000 1123344
Q ss_pred cCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCC-CcCCCc
Q 044750 511 TAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEE-LPILED 589 (658)
Q Consensus 511 ~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~-~p~l~~ 589 (658)
..+++|++|+++++ .+..... +..+..+++|++|++++|......|..+..+++|++|++++|..... +|. .
T Consensus 397 ~~l~~L~~L~l~~n-~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~ 469 (606)
T 3t6q_A 397 KECPQLELLDLAFT-RLKVKDA----QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK--T 469 (606)
T ss_dssp TTCTTCSEEECTTC-CEECCTT----CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECS--S
T ss_pred cCCccCCeEECCCC-cCCCccc----chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccccc--c
Confidence 55666666666665 2221111 22355667777777777654444555666677777777777764331 110 0
Q ss_pred cccCCCCCCCeeeccCCCCccccCCCCCCCCCccEEEEecCh
Q 044750 590 RKTTDIPRLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 590 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 631 (658)
..+..+++|++|++++|......|..+..+++|+.|++++|.
T Consensus 470 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred hhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 235566777777777775444445666667777777777664
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2e-30 Score=285.03 Aligned_cols=390 Identities=16% Similarity=0.175 Sum_probs=275.9
Q ss_pred CceEEEEEEcCCCC-CCCccccCCCcceEEEeecCCCC-----c------------------------------------
Q 044750 177 DKVRHLGLNFEGGA-PLPMSIYGLNRLRTLLIYDKGPS-----L------------------------------------ 214 (658)
Q Consensus 177 ~~~~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-----~------------------------------------ 214 (658)
.+++.+++.++... .+|..+.++++|++|++++|... +
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47899999988875 37888999999999999998430 0
Q ss_pred ---------------------------------ccccccccccCCCcccEEEEccccCCCCCCcccccc-----------
Q 044750 215 ---------------------------------RSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIRE----------- 250 (658)
Q Consensus 215 ---------------------------------~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~----------- 250 (658)
....+|..|.++++|++|++++ +.+..
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~---------n~l~~~~~~~~~~~~~ 231 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGN---------SPFVAENICEAWENEN 231 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEES---------CCCCGGGBSSSCSCTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcC---------Cccccccccccccccc
Confidence 0112466788899999999943 33444
Q ss_pred -------cccccc--CCCccceeecCCcccc-ccchhhhcCCCCcEeecCCCC-CCC-CCCcccccc------cCCceee
Q 044750 251 -------IPENIG--KLIHLKYLNLSELCIE-RLPETLCELYNLRKLDIRRCP-NLR-ELPAGIGKL------MNMRSLL 312 (658)
Q Consensus 251 -------lp~~~~--~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~-~~~-~lp~~i~~L------~~L~~L~ 312 (658)
+|..++ ++++|++|++++|.+. .+|..++++++|++|++++|. ... .+|..++.+ ++|++|+
T Consensus 232 ~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~ 311 (636)
T 4eco_A 232 SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311 (636)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred cchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE
Confidence 888888 9999999999999866 888889999999999999987 444 688888877 8999999
Q ss_pred cCCcccCccCcC--cCCCCCCCCccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccC-C
Q 044750 313 NGQTYSLKYMPI--GISKLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMEN-L 389 (658)
Q Consensus 313 l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~-L 389 (658)
+++|.. ..+|. .++.+++|++|++.. +...+..+ .+..+++|+.+.+.+.. +. ..+..+..+++ |
T Consensus 312 L~~n~l-~~ip~~~~l~~l~~L~~L~L~~--N~l~g~ip----~~~~l~~L~~L~L~~N~----l~-~lp~~l~~l~~~L 379 (636)
T 4eco_A 312 IGYNNL-KTFPVETSLQKMKKLGMLECLY--NQLEGKLP----AFGSEIKLASLNLAYNQ----IT-EIPANFCGFTEQV 379 (636)
T ss_dssp CCSSCC-SSCCCHHHHTTCTTCCEEECCS--CCCEEECC----CCEEEEEESEEECCSSE----EE-ECCTTSEEECTTC
T ss_pred CCCCcC-CccCchhhhccCCCCCEEeCcC--CcCccchh----hhCCCCCCCEEECCCCc----cc-cccHhhhhhcccC
Confidence 999854 48888 788999999886432 22211222 34444555555554321 11 22344677888 9
Q ss_pred CceEEEecCccCCCCcccccCchhHHHHhhhcCC--CCCCceEEEeeeCCCC-CChhhh-------cccccceEEeeCCC
Q 044750 390 LRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQP--HLNVEELQICFYGGDI-FPKWLT-------SLTYLRELNLWFCF 459 (658)
Q Consensus 390 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~-~p~~~~-------~l~~L~~L~l~~~~ 459 (658)
+.|+++++.+. .++..+.. .++|+.|.+.++.... .|.++. .+++|++|++++|.
T Consensus 380 ~~L~Ls~N~l~---------------~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~ 444 (636)
T 4eco_A 380 ENLSFAHNKLK---------------YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444 (636)
T ss_dssp CEEECCSSCCS---------------SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC
T ss_pred cEEEccCCcCc---------------ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc
Confidence 99998887732 12222222 2378888888776543 455555 66788999999886
Q ss_pred CCCCCCC--CCCcc-ccceeccccccceEeCccccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCcccccccccccc
Q 044750 460 NCEHLPP--LGKLP-LEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITR 536 (658)
Q Consensus 460 ~~~~l~~--~~~lp-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~ 536 (658)
.. .+|. ...++ |+.|.+.++.-- .++..... ........+++|++|+++++ .++.+
T Consensus 445 l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~------------~~~~~~~~l~~L~~L~Ls~N-~l~~l------ 503 (636)
T 4eco_A 445 IS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLK------------DENENFKNTYLLTSIDLRFN-KLTKL------ 503 (636)
T ss_dssp CC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSE------------ETTEECTTGGGCCEEECCSS-CCCBC------
T ss_pred cC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhc------------cccccccccCCccEEECcCC-cCCcc------
Confidence 55 4443 33467 888888876532 11111100 00011223459999999998 44432
Q ss_pred ccccC--cCcccceeeeeCCCCCCCCCccccCCCCcceEEEc------cCCCCCCCcCCCccccCCCCCCCeeeccCCCC
Q 044750 537 KENIS--IMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIY------FCDLLEELPILEDRKTTDIPRLSSLEIGYCPK 608 (658)
Q Consensus 537 ~~~~~--~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~------~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~ 608 (658)
+..+. .+++|+.|++++|. +..+|..+.++++|++|+++ +|.....+| ..+..+++|++|++++|..
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP----EGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC----TTGGGCSSCCEEECCSSCC
T ss_pred ChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccCh----HHHhcCCCCCEEECCCCcC
Confidence 44555 89999999999985 45599999999999999995 455667777 4778899999999999975
Q ss_pred ccccCCCCCCCCCccEEEEecCh
Q 044750 609 LKVLPNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 609 l~~l~~~~~~l~~L~~L~l~~c~ 631 (658)
+.+|..+. ++|+.|++++||
T Consensus 579 -~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 579 -RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp -CBCCSCCC--TTCCEEECCSCT
T ss_pred -CccCHhHh--CcCCEEECcCCC
Confidence 88998765 899999999996
No 6
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.4e-29 Score=273.68 Aligned_cols=411 Identities=18% Similarity=0.182 Sum_probs=242.9
Q ss_pred cCCCceEEEEEEcCCCCCCC-ccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc
Q 044750 174 SFGDKVRHLGLNFEGGAPLP-MSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP 252 (658)
Q Consensus 174 ~~~~~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp 252 (658)
..+..+++++++++.+..++ ..+.++++|++|++++|... ...+..|.++++|++|++ ++ +.+..+|
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---~i~~~~~~~l~~L~~L~L------~~---n~l~~~~ 92 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLIL------TG---NPIQSLA 92 (570)
T ss_dssp SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC---EECTTTTTTCTTCCEEEC------TT---CCCCEEC
T ss_pred CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC---ccCcccccCchhCCEEeC------cC---CcCCccC
Confidence 34678999999999887644 46889999999999999754 445677899999999999 44 5566665
Q ss_pred -ccccCCCccceeecCCccccccch-hhhcCCCCcEeecCCCCCCC-CCCcccccccCCceeecCCcccCccCcCcCCCC
Q 044750 253 -ENIGKLIHLKYLNLSELCIERLPE-TLCELYNLRKLDIRRCPNLR-ELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKL 329 (658)
Q Consensus 253 -~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l 329 (658)
..++++++|++|++++|.++.+|. .++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 172 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH
T ss_pred HhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccch
Confidence 678999999999999999998876 68999999999999998443 479999999999999999996555555667777
Q ss_pred CCC----CccCceeeccCCCCCccccccccccCcccCCceecCc---------------------------cCC------
Q 044750 330 TSL----RTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGL---------------------------SNV------ 372 (658)
Q Consensus 330 ~~L----~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~---------------------------~~~------ 372 (658)
++| +.|++ ..+......+..+... .|+.+.+... ...
T Consensus 173 ~~L~~~~~~L~l--~~n~l~~~~~~~~~~~----~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 246 (570)
T 2z63_A 173 HQMPLLNLSLDL--SLNPMNFIQPGAFKEI----RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246 (570)
T ss_dssp HTCTTCCCEEEC--TTCCCCEECTTTTTTC----EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEEC
T ss_pred hccchhhhhccc--CCCCceecCHHHhccC----cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhc
Confidence 776 33321 1111100001111110 1111111100 000
Q ss_pred ---------------------CChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHHHhhhcCCCCCCceEE
Q 044750 373 ---------------------SHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLNVEELQ 431 (658)
Q Consensus 373 ---------------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 431 (658)
..........+..+++|+.|+++.+... .++..+... +++.|.
T Consensus 247 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~---------------~l~~~~~~~-~L~~L~ 310 (570)
T 2z63_A 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE---------------RVKDFSYNF-GWQHLE 310 (570)
T ss_dssp CTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC---------------SCCBCCSCC-CCSEEE
T ss_pred chhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch---------------hhhhhhccC-CccEEe
Confidence 0011111233556677777777766521 122223334 677777
Q ss_pred EeeeCCCCCChhhhcccccceEEeeCCCCCCCCCCCCCcc-ccceeccccccceEe--Ccc-------------------
Q 044750 432 ICFYGGDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLP-LEKLQLYILKSVKRV--GNE------------------- 489 (658)
Q Consensus 432 l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lp-L~~L~l~~~~~l~~~--~~~------------------- 489 (658)
+.++....+|. ..+++|++|++++|......+. ..+| |+.|+++++..-... ...
T Consensus 311 l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 387 (570)
T 2z63_A 311 LVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387 (570)
T ss_dssp EESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE
T ss_pred eccCcccccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc
Confidence 77766666555 3566666666666654443333 4455 666665544321110 000
Q ss_pred ----ccCCCCCC---CCCCCCCCC-C-CcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCC-CC
Q 044750 490 ----FLGIEESS---EDDPSSSSS-S-SSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKL-KA 559 (658)
Q Consensus 490 ----~~~~~~~~---~~~~~~~~~-~-~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l-~~ 559 (658)
+....... ......... + ..+..+++|++|++++|. +. ...+..+..+++|++|++++|... ..
T Consensus 388 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~ 461 (570)
T 2z63_A 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TR-----VAFNGIFNGLSSLEVLKMAGNSFQENF 461 (570)
T ss_dssp EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CE-----ECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc-cc-----ccchhhhhcCCcCcEEECcCCcCcccc
Confidence 11100000 000000001 1 234455556666665551 11 112344556777777777776543 24
Q ss_pred CCccccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCCCCCCCCCccEEEEecCh
Q 044750 560 LPDYLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 560 lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 631 (658)
+|..+..+++|++|++++|......| ..+..+++|++|++++|......|..+..+++|+.|++++||
T Consensus 462 ~p~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 462 LPDIFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred chhhhhcccCCCEEECCCCccccCCh----hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 66666777777777777776554444 356677777788887775333333456677778888877765
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.1e-29 Score=283.28 Aligned_cols=390 Identities=16% Similarity=0.166 Sum_probs=256.4
Q ss_pred CceEEEEEEcCCCC-CCCccccCCCcceEEEe-ecCCCC----c------------------------------------
Q 044750 177 DKVRHLGLNFEGGA-PLPMSIYGLNRLRTLLI-YDKGPS----L------------------------------------ 214 (658)
Q Consensus 177 ~~~~~l~l~~~~~~-~~~~~~~~~~~L~~L~l-~~~~~~----~------------------------------------ 214 (658)
.+++.+++.++.+. .+|..+.++++|+.|++ ++|... +
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57888999888875 37888999999999999 555210 0
Q ss_pred ---------------------------------ccccccccccCCCcccEEEEccccCCCCCCcccccc-----------
Q 044750 215 ---------------------------------RSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIRE----------- 250 (658)
Q Consensus 215 ---------------------------------~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~----------- 250 (658)
....+|..|.++++|++|+|++ +.+..
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~---------N~Lsg~~i~~~~~~~s 473 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN---------SPFTYDNIAVDWEDAN 473 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEES---------CCCCGGGBSSSCSCTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcC---------CcCCCCcccccccccc
Confidence 0000456677888888888833 33333
Q ss_pred -------cccccc--CCCccceeecCCcccc-ccchhhhcCCCCcEeecCCCCCCC--CCCccccccc-------CCcee
Q 044750 251 -------IPENIG--KLIHLKYLNLSELCIE-RLPETLCELYNLRKLDIRRCPNLR--ELPAGIGKLM-------NMRSL 311 (658)
Q Consensus 251 -------lp~~~~--~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~--~lp~~i~~L~-------~L~~L 311 (658)
+|..++ ++++|++|+|++|.+. .+|..++++++|++|++++|..+. .+|..++.++ +|++|
T Consensus 474 ~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred cccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 787777 8888888888888754 778888888888888888886333 5777777666 88888
Q ss_pred ecCCcccCccCcC--cCCCCCCCCccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccC-
Q 044750 312 LNGQTYSLKYMPI--GISKLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMEN- 388 (658)
Q Consensus 312 ~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~- 388 (658)
++++|.. ..+|. .++.+++|+.|++.. +.. ..++ .+..+++|+.+.+....- . ..+..+..+++
T Consensus 554 ~Ls~N~L-~~ip~~~~l~~L~~L~~L~Ls~--N~l-~~lp----~~~~L~~L~~L~Ls~N~l----~-~lp~~l~~l~~~ 620 (876)
T 4ecn_A 554 YMGYNNL-EEFPASASLQKMVKLGLLDCVH--NKV-RHLE----AFGTNVKLTDLKLDYNQI----E-EIPEDFCAFTDQ 620 (876)
T ss_dssp ECCSSCC-CBCCCHHHHTTCTTCCEEECTT--SCC-CBCC----CCCTTSEESEEECCSSCC----S-CCCTTSCEECTT
T ss_pred EeeCCcC-CccCChhhhhcCCCCCEEECCC--CCc-ccch----hhcCCCcceEEECcCCcc----c-cchHHHhhcccc
Confidence 8888844 47777 788888888775322 221 1222 444555555555544221 1 22234666777
Q ss_pred CCceEEEecCccCCCCcccccCchhHHHHhhhcCCC--CCCceEEEeeeCCCCC-C---hhhh--cccccceEEeeCCCC
Q 044750 389 LLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPH--LNVEELQICFYGGDIF-P---KWLT--SLTYLRELNLWFCFN 460 (658)
Q Consensus 389 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~-p---~~~~--~l~~L~~L~l~~~~~ 460 (658)
|+.|+++.+.+. .++..+... ++|+.|.++++..... | ..+. .+++|+.|++++|..
T Consensus 621 L~~L~Ls~N~L~---------------~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L 685 (876)
T 4ecn_A 621 VEGLGFSHNKLK---------------YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685 (876)
T ss_dssp CCEEECCSSCCC---------------SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC
T ss_pred CCEEECcCCCCC---------------cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC
Confidence 888888777632 111122222 3477777777654322 2 2222 334777888877754
Q ss_pred CCCCCC--CCCcc-ccceeccccccceEeCccccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccc
Q 044750 461 CEHLPP--LGKLP-LEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRK 537 (658)
Q Consensus 461 ~~~l~~--~~~lp-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~ 537 (658)
. .+|. ...++ |+.|.++++.-- .++..... ........+++|+.|+|++| .++.+ +
T Consensus 686 ~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~------------~~~~~l~nl~~L~~L~Ls~N-~L~~l------p 744 (876)
T 4ecn_A 686 Q-KFPTELFATGSPISTIILSNNLMT-SIPENSLK------------PKDGNYKNTYLLTTIDLRFN-KLTSL------S 744 (876)
T ss_dssp C-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSS------------CTTSCCTTGGGCCEEECCSS-CCCCC------C
T ss_pred C-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhc------------cccccccccCCccEEECCCC-CCccc------h
Confidence 4 3432 22456 777777765321 11111110 00111235569999999998 55533 4
Q ss_pred cccC--cCcccceeeeeCCCCCCCCCccccCCCCcceEEEcc------CCCCCCCcCCCccccCCCCCCCeeeccCCCCc
Q 044750 538 ENIS--IMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYF------CDLLEELPILEDRKTTDIPRLSSLEIGYCPKL 609 (658)
Q Consensus 538 ~~~~--~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~------c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l 609 (658)
..+. .+++|+.|+|++|. +..+|..+..+++|+.|+|++ |.....+| ..+..+++|+.|++++|..
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip----~~l~~L~~L~~L~Ls~N~L- 818 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP----TGITTCPSLIQLQIGSNDI- 818 (876)
T ss_dssp GGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC----TTGGGCSSCCEEECCSSCC-
T ss_pred HHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccCh----HHHhcCCCCCEEECCCCCC-
Confidence 4555 89999999999984 555899999999999999987 55566777 4778899999999999975
Q ss_pred cccCCCCCCCCCccEEEEecChh
Q 044750 610 KVLPNYLLRTTTLQELIIHRCPL 632 (658)
Q Consensus 610 ~~l~~~~~~l~~L~~L~l~~c~~ 632 (658)
+.+|..+. ++|+.|++++|+-
T Consensus 819 ~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 819 RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CBCCSCCC--SSSCEEECCSCTT
T ss_pred CccCHhhc--CCCCEEECCCCCC
Confidence 88998765 6999999999973
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=2.4e-29 Score=276.68 Aligned_cols=425 Identities=16% Similarity=0.096 Sum_probs=261.4
Q ss_pred CCceEEEEEEcCCCCCC-CccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc-c
Q 044750 176 GDKVRHLGLNFEGGAPL-PMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP-E 253 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp-~ 253 (658)
...++.+++.++.+..+ +..+.++++|++|++++|... ...+..|.++++|++|++ ++ +.+..++ .
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~L------~~---n~l~~~~~~ 122 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ---SFSPGSFSGLTSLENLVA------VE---TKLASLESF 122 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---CCCTTSSTTCTTCCEEEC------TT---SCCCCSSSS
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc---ccChhhcCCcccCCEEEc------cC---Ccccccccc
Confidence 56789999999888764 456889999999999999754 445778899999999999 44 5555555 6
Q ss_pred cccCCCccceeecCCcccc--ccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCc----eeecCCcccCccCcCcCC
Q 044750 254 NIGKLIHLKYLNLSELCIE--RLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMR----SLLNGQTYSLKYMPIGIS 327 (658)
Q Consensus 254 ~~~~l~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~----~L~l~~~~~~~~~p~~i~ 327 (658)
.++++++|++|++++|.++ .+|..++++++|++|++++|......|..++.+++|+ .|++++|. +..+|....
T Consensus 123 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~~~ 201 (606)
T 3vq2_A 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAF 201 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCC-CCEECTTTT
T ss_pred ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCC-cceeCcccc
Confidence 6889999999999999987 5788999999999999999884444456677666655 68888874 444554443
Q ss_pred CCCCCCccCceeeccC----------------------------------------------------CCCCcccccccc
Q 044750 328 KLTSLRTLEKFVVGGG----------------------------------------------------VDGGSTCRLESL 355 (658)
Q Consensus 328 ~l~~L~~L~~~~~~~~----------------------------------------------------~~~~~~~~~~~l 355 (658)
...+|+.|++...... ...........+
T Consensus 202 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~ 281 (606)
T 3vq2_A 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281 (606)
T ss_dssp TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSC
T ss_pred cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccccc
Confidence 3345555543221100 000000011112
Q ss_pred ccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchh-----H--HHHhhhcCCCCCCc
Q 044750 356 KNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEK-----D--KQLLEALQPHLNVE 428 (658)
Q Consensus 356 ~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-----~--~~~~~~l~~~~~L~ 428 (658)
..+.+|+.+.+.+... ...+ .+..+++|+.|+++++...... ........ . ......+...++|+
T Consensus 282 ~~l~~L~~L~l~~~~~-~~l~-----~l~~~~~L~~L~l~~n~l~~lp--~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~ 353 (606)
T 3vq2_A 282 HCLANVSAMSLAGVSI-KYLE-----DVPKHFKWQSLSIIRCQLKQFP--TLDLPFLKSLTLTMNKGSISFKKVALPSLS 353 (606)
T ss_dssp GGGTTCSEEEEESCCC-CCCC-----CCCTTCCCSEEEEESCCCSSCC--CCCCSSCCEEEEESCSSCEECCCCCCTTCC
T ss_pred ccCCCCCEEEecCccc-hhhh-----hccccccCCEEEcccccCcccc--cCCCCccceeeccCCcCccchhhccCCCCC
Confidence 2333333333332211 0000 2333444444444444321000 00000000 0 00000233456677
Q ss_pred eEEEeeeCCCCC---ChhhhcccccceEEeeCCCCCCCCCCCCCcc-ccceeccccccceEeC-ccccCCCCC---CCCC
Q 044750 429 ELQICFYGGDIF---PKWLTSLTYLRELNLWFCFNCEHLPPLGKLP-LEKLQLYILKSVKRVG-NEFLGIEES---SEDD 500 (658)
Q Consensus 429 ~L~l~~~~~~~~---p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lp-L~~L~l~~~~~l~~~~-~~~~~~~~~---~~~~ 500 (658)
.|.+.++..... |..+..+++|++|++++|........+..++ |+.|.+.++....... ..+...... ....
T Consensus 354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred EEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence 777766544332 5556666777777777665333223445555 6666666543221111 011111110 0000
Q ss_pred CC-CCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCC
Q 044750 501 PS-SSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCD 579 (658)
Q Consensus 501 ~~-~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 579 (658)
.. ....+..+..+++|++|+++++ .+... ..+..+..+++|++|++++|......|..+..+++|++|++++|.
T Consensus 434 n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 434 TNTKIDFDGIFLGLTSLNTLKMAGN-SFKDN----TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTC-EEGGG----EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccchhhhcCCCCCCEEECCCC-cCCCc----chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 00 1123455678899999999988 23221 125677899999999999996655667788999999999999998
Q ss_pred CCCCCcCCCccccCCCCCCCeeeccCCCCccccCCCCCCCC-CccEEEEecCh
Q 044750 580 LLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPNYLLRTT-TLQELIIHRCP 631 (658)
Q Consensus 580 ~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~-~L~~L~l~~c~ 631 (658)
.....| ..+..+++|++|++++|+ ++.+|..+..++ +|+.|++++||
T Consensus 509 l~~~~~----~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 509 LLFLDS----SHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp CSCEEG----GGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred CCCcCH----HHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 776656 578899999999999996 778998888887 59999999887
No 9
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1e-27 Score=258.47 Aligned_cols=409 Identities=17% Similarity=0.111 Sum_probs=193.2
Q ss_pred CCceEEEEEEcCCCCCCC-ccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccccc
Q 044750 176 GDKVRHLGLNFEGGAPLP-MSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPEN 254 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~ 254 (658)
+..+++++++++.+...+ ..+.++++|++|++++|... ...+..|.++++|++|++ ++ +.+..+|..
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L------s~---N~l~~lp~~ 87 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLDL------SH---NKLVKISCH 87 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC---EEEGGGGTTCTTCCEEEC------CS---SCCCEEECC
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccC---CcChHHhhcccCCCEEec------CC---CceeecCcc
Confidence 356666666666665544 34666666777777666543 333456666666777776 43 455566655
Q ss_pred ccCCCccceeecCCccccc--cchhhhcCCCCcEeecCCCCCCCCCCcccccccCC--ceeecCCccc--CccCcCcCCC
Q 044750 255 IGKLIHLKYLNLSELCIER--LPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNM--RSLLNGQTYS--LKYMPIGISK 328 (658)
Q Consensus 255 ~~~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L--~~L~l~~~~~--~~~~p~~i~~ 328 (658)
.+++|++|++++|.++. +|..++++++|++|++++|. +.. ..+..+++| +.|++++|.. ....|..+..
T Consensus 88 --~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~ 162 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162 (520)
T ss_dssp --CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT
T ss_pred --ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccccccccccccccc
Confidence 56667777777766663 45666667777777776665 322 345556666 6666666644 3444444444
Q ss_pred CCCCCccCceeeccCCCCCccccccccccCcccCCceecCccC---CCChhhHhhcccCcccCCCceEEEecCccCCCCc
Q 044750 329 LTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSN---VSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGE 405 (658)
Q Consensus 329 l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~---~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 405 (658)
++. +.+++....+...+... -..+..++.|+.+.+..... ........ ..+..+++|+.|++..+....
T Consensus 163 l~~-~~l~l~l~~n~~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~---- 234 (520)
T 2z7x_B 163 FNT-ESLHIVFPTNKEFHFIL--DVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTW---- 234 (520)
T ss_dssp CCE-EEEEEECCSSSCCCCCC--CCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEH----
T ss_pred ccc-ceEEEEeccCcchhhhh--hhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCH----
Confidence 331 12211111111100000 00112233333333322110 00011111 134444444444444432100
Q ss_pred ccccCchhHHH-----------------------Hhhhc-----CCCCCCceEEEeeeCCCCCC-hhhhcc---cccceE
Q 044750 406 EGRRKNEKDKQ-----------------------LLEAL-----QPHLNVEELQICFYGGDIFP-KWLTSL---TYLREL 453 (658)
Q Consensus 406 ~~~~~~~~~~~-----------------------~~~~l-----~~~~~L~~L~l~~~~~~~~p-~~~~~l---~~L~~L 453 (658)
..... ++..+ ...++|+.+.+.++.. .+| .++..+ .+|+.|
T Consensus 235 ------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L 307 (520)
T 2z7x_B 235 ------NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNF 307 (520)
T ss_dssp ------HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEE
T ss_pred ------HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEE
Confidence 00000 01111 2223333333333333 333 222221 234444
Q ss_pred EeeCCCCCCCCCCCCCcc-ccceeccccccceEeCccccCCCCCC---CCCCCCC---CCCCcccCCCCcceeeecCCcc
Q 044750 454 NLWFCFNCEHLPPLGKLP-LEKLQLYILKSVKRVGNEFLGIEESS---EDDPSSS---SSSSSVTAFPKLKSLDIGGMEE 526 (658)
Q Consensus 454 ~l~~~~~~~~l~~~~~lp-L~~L~l~~~~~l~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~L~~L~L~~~~~ 526 (658)
++++|.... .+..+.++ |+.|+++++..-......+....... ....... .+|..+..+++|++|+++++ .
T Consensus 308 ~l~~n~l~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~ 385 (520)
T 2z7x_B 308 TVSGTRMVH-MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-S 385 (520)
T ss_dssp EEESSCCCC-CCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-C
T ss_pred EcCCCcccc-ccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-c
Confidence 444443211 11113444 55555554331110000000000000 0000000 11122345666666666665 2
Q ss_pred ccc-cccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccC
Q 044750 527 LEE-WNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGY 605 (658)
Q Consensus 527 L~~-~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~ 605 (658)
+.. +. ...+..+++|++|++++|.....+|..+. ++|+.|++++|.. ..+| ..+..+++|++|++++
T Consensus 386 l~~~l~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l-~~ip----~~~~~l~~L~~L~L~~ 453 (520)
T 2z7x_B 386 VSYDEK-----KGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIP----KQVVKLEALQELNVAS 453 (520)
T ss_dssp CBCCGG-----GCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCC-CCCC----GGGGGCTTCCEEECCS
T ss_pred CCcccc-----cchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcc-cccc----hhhhcCCCCCEEECCC
Confidence 222 11 12244566777777777654444444432 5777777777754 3566 3556788899999998
Q ss_pred CCCccccCCC-CCCCCCccEEEEecCh
Q 044750 606 CPKLKVLPNY-LLRTTTLQELIIHRCP 631 (658)
Q Consensus 606 c~~l~~l~~~-~~~l~~L~~L~l~~c~ 631 (658)
|. ++.+|.. +..+++|+.|++++||
T Consensus 454 N~-l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 454 NQ-LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred Cc-CCccCHHHhccCCcccEEECcCCC
Confidence 85 6677775 7788889999998876
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=3.6e-29 Score=274.98 Aligned_cols=378 Identities=16% Similarity=0.166 Sum_probs=276.7
Q ss_pred CcceEEEeecCCCCcccccccccccCCCcccEEEEccccC------CC--------------------------------
Q 044750 200 NRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSS------FS-------------------------------- 241 (658)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~------l~-------------------------------- 241 (658)
.+++.|++.++... +.++..+.+++.|++|+|+++.. +.
T Consensus 81 ~~V~~L~L~~~~l~---g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGAS---GRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCE---EEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccC---CcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhh
Confidence 58999999999754 55678899999999999987742 00
Q ss_pred -------------------------------CCCccccccccccccCCCccceeecCCccccc-----------------
Q 044750 242 -------------------------------HPSPNFIREIPENIGKLIHLKYLNLSELCIER----------------- 273 (658)
Q Consensus 242 -------------------------------~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~----------------- 273 (658)
+..++.+..+|..++++++|++|+|++|.++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence 00023455699999999999999999999997
Q ss_pred -cchhhh--cCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcc-cCc-cCcCcCCCC------CCCCccCceeecc
Q 044750 274 -LPETLC--ELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTY-SLK-YMPIGISKL------TSLRTLEKFVVGG 342 (658)
Q Consensus 274 -lp~~i~--~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~-~~~-~~p~~i~~l------~~L~~L~~~~~~~ 342 (658)
+|..++ ++++|++|++++|...+.+|..++++++|++|++++|. ... .+|..++.+ ++|+.|++.. +
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~--n 315 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY--N 315 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS--S
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC--C
Confidence 999999 99999999999999888999999999999999999996 443 588888776 8888886432 2
Q ss_pred CCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHHHhhhcC
Q 044750 343 GVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQ 422 (658)
Q Consensus 343 ~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 422 (658)
.. ...+. ...+.++++|+.+.+... .+....+ .+..+++|+.|+++++.+. .++..+.
T Consensus 316 ~l-~~ip~-~~~l~~l~~L~~L~L~~N----~l~g~ip-~~~~l~~L~~L~L~~N~l~---------------~lp~~l~ 373 (636)
T 4eco_A 316 NL-KTFPV-ETSLQKMKKLGMLECLYN----QLEGKLP-AFGSEIKLASLNLAYNQIT---------------EIPANFC 373 (636)
T ss_dssp CC-SSCCC-HHHHTTCTTCCEEECCSC----CCEEECC-CCEEEEEESEEECCSSEEE---------------ECCTTSE
T ss_pred cC-CccCc-hhhhccCCCCCEEeCcCC----cCccchh-hhCCCCCCCEEECCCCccc---------------cccHhhh
Confidence 22 13333 002344455555555432 1221122 5678889999999887621 2334455
Q ss_pred CCCC-CceEEEeeeCCCCCChhhhcc--cccceEEeeCCCCCCCCCC-CC-------Ccc-ccceeccccccceEeCccc
Q 044750 423 PHLN-VEELQICFYGGDIFPKWLTSL--TYLRELNLWFCFNCEHLPP-LG-------KLP-LEKLQLYILKSVKRVGNEF 490 (658)
Q Consensus 423 ~~~~-L~~L~l~~~~~~~~p~~~~~l--~~L~~L~l~~~~~~~~l~~-~~-------~lp-L~~L~l~~~~~l~~~~~~~ 490 (658)
..++ |+.|.+.++....+|.++..+ ++|+.|++++|......|. ++ .++ |+.|.++++.--
T Consensus 374 ~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~------- 446 (636)
T 4eco_A 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS------- 446 (636)
T ss_dssp EECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-------
T ss_pred hhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-------
Confidence 5677 999999998888888877754 4899999999987665442 33 455 788877765421
Q ss_pred cCCCCCCCCCCCCCCCCCc-ccCCCCcceeeecCCcccccccccccc--ccccCcCcccceeeeeCCCCCCCCCcccc--
Q 044750 491 LGIEESSEDDPSSSSSSSS-VTAFPKLKSLDIGGMEELEEWNYRITR--KENISIMPRLSSLWIRGCPKLKALPDYLL-- 565 (658)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~L~~~~~L~~~~~~~~~--~~~~~~~~~L~~L~L~~c~~l~~lp~~~~-- 565 (658)
.+|.. +..+++|++|+++++ .++.+...... ......+++|++|++++| .+..+|..+.
T Consensus 447 --------------~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~ 510 (636)
T 4eco_A 447 --------------KFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRAT 510 (636)
T ss_dssp --------------SCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTT
T ss_pred --------------cCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhc
Confidence 12222 235899999999998 44433220000 000123349999999998 4568999887
Q ss_pred CCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeecc------CCCCccccCCCCCCCCCccEEEEecChh
Q 044750 566 QSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIG------YCPKLKVLPNYLLRTTTLQELIIHRCPL 632 (658)
Q Consensus 566 ~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~------~c~~l~~l~~~~~~l~~L~~L~l~~c~~ 632 (658)
.+++|++|++++|.... +| ..+..+++|++|+++ +|.....+|..+..+++|+.|++++|.-
T Consensus 511 ~l~~L~~L~Ls~N~l~~-ip----~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSK-FP----TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp TCTTCCEEECCSSCCSS-CC----CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cCCCcCEEECCCCCCCC-cC----hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 99999999999998665 88 477889999999995 4555678899999999999999999974
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.8e-27 Score=258.66 Aligned_cols=420 Identities=18% Similarity=0.144 Sum_probs=267.0
Q ss_pred CCceEEEEEEcCCCCCC-CccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccccc
Q 044750 176 GDKVRHLGLNFEGGAPL-PMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPEN 254 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~ 254 (658)
+..++++++.++.+... +..+.++++|++|++++|... ...+..|.++++|++|++ ++ +.+..+|..
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L------s~---n~l~~~~~~ 92 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN---TIEGDAFYSLGSLEHLDL------SD---NHLSSLSSS 92 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEEC------TT---SCCCSCCHH
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC---ccChhhccccccCCEEEC------CC---CccCccCHH
Confidence 56899999999988764 456889999999999999764 455677899999999999 44 566666654
Q ss_pred -ccCCCccceeecCCccccc--cchhhhcCCCCcEeecCCCCCCCCCC-cccccccCCceeecCCcccCccCcCcCCCCC
Q 044750 255 -IGKLIHLKYLNLSELCIER--LPETLCELYNLRKLDIRRCPNLRELP-AGIGKLMNMRSLLNGQTYSLKYMPIGISKLT 330 (658)
Q Consensus 255 -~~~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~ 330 (658)
++++++|++|++++|.++. .|..++++++|++|++++|..+..+| ..+..+++|++|++++|......|..++.++
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence 8999999999999999984 56789999999999999998677776 5789999999999999977777888888888
Q ss_pred CCCccCceeeccCCCCCccccccccccCcccCCceecCccCC---------------------------CChhhHhhccc
Q 044750 331 SLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNV---------------------------SHLDEAERIGL 383 (658)
Q Consensus 331 ~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~---------------------------~~~~~~~~~~l 383 (658)
+|++|++...... ..+..+ ...+++|+.+.+.+..-. ..........+
T Consensus 173 ~L~~L~l~~n~~~---~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 247 (549)
T 2z81_A 173 DIHHLTLHLSESA---FLLEIF--ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247 (549)
T ss_dssp EEEEEEEECSBST---THHHHH--HHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGG
T ss_pred cCceEecccCccc---ccchhh--HhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHh
Confidence 8887764322211 111110 011222322222221000 00001111122
Q ss_pred CcccCCCceEEEecCccCCCCcc----------ccc----------Cch-hHHHHhhhcCCCCCCceEEEeeeCCCCCCh
Q 044750 384 HNMENLLRLHLVFDGVVDGEGEE----------GRR----------KNE-KDKQLLEALQPHLNVEELQICFYGGDIFPK 442 (658)
Q Consensus 384 ~~~~~L~~L~l~~~~~~~~~~~~----------~~~----------~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~ 442 (658)
..+.+|+.+++..+......... ... ... .............+++.|.+.++....+|.
T Consensus 248 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~ 327 (549)
T 2z81_A 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327 (549)
T ss_dssp GGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCH
T ss_pred hhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCH
Confidence 33444555555444321100000 000 000 000000000113578889998888888888
Q ss_pred hh-hcccccceEEeeCCCCCCCC----CCCCCcc-ccceeccccccceEe--Ccccc---CCCCCCCCCCCCCCCCCccc
Q 044750 443 WL-TSLTYLRELNLWFCFNCEHL----PPLGKLP-LEKLQLYILKSVKRV--GNEFL---GIEESSEDDPSSSSSSSSVT 511 (658)
Q Consensus 443 ~~-~~l~~L~~L~l~~~~~~~~l----~~~~~lp-L~~L~l~~~~~l~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~ 511 (658)
++ ..+++|++|++++|...+.+ ..++.+| |+.|+++++.--... +..+. ....+.........+|..+.
T Consensus 328 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 407 (549)
T 2z81_A 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ 407 (549)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCC
T ss_pred HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhc
Confidence 77 47999999999999765533 2367788 999999876532110 01111 11111122222334555566
Q ss_pred CCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCccc
Q 044750 512 AFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILEDRK 591 (658)
Q Consensus 512 ~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~ 591 (658)
.+++|++|+++++ .++.+. .. .+++|++|++++| .++.++ ..+++|++|++++|.. +.+| .
T Consensus 408 ~~~~L~~L~Ls~N-~l~~l~------~~--~~~~L~~L~Ls~N-~l~~~~---~~l~~L~~L~Ls~N~l-~~ip-----~ 468 (549)
T 2z81_A 408 WPEKMRFLNLSST-GIRVVK------TC--IPQTLEVLDVSNN-NLDSFS---LFLPRLQELYISRNKL-KTLP-----D 468 (549)
T ss_dssp CCTTCCEEECTTS-CCSCCC------TT--SCTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCC-SSCC-----C
T ss_pred ccccccEEECCCC-Cccccc------ch--hcCCceEEECCCC-Chhhhc---ccCChhcEEECCCCcc-CcCC-----C
Confidence 6677777777776 233221 11 2357777777777 344333 4688999999999964 5788 2
Q ss_pred cCCCCCCCeeeccCCCCccccCCCCCCCCCccEEEEecCh
Q 044750 592 TTDIPRLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 592 ~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 631 (658)
...+++|+.|++++|......|..+..+++|+.|++++||
T Consensus 469 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 469 ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 4578999999999996444445568899999999998887
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=6.3e-29 Score=277.25 Aligned_cols=376 Identities=15% Similarity=0.156 Sum_probs=272.4
Q ss_pred CcceEEEeecCCCCcccccccccccCCCcccEEEE-ccccCCCCC-----------------------------------
Q 044750 200 NRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVI-RQLSSFSHP----------------------------------- 243 (658)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L-~~~~~l~~~----------------------------------- 243 (658)
.++..|++.++... +.+|..+.+++.|++|+| +++ .+++.
T Consensus 323 ~~V~~L~Ls~~~L~---G~ip~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~ 398 (876)
T 4ecn_A 323 GRVTGLSLAGFGAK---GRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398 (876)
T ss_dssp SCEEEEECTTTCCE---EEECGGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred CCEEEEECccCCCC---CcCchHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence 68999999999764 566788999999999999 332 11100
Q ss_pred ----------------------------------CccccccccccccCCCccceeecCCccccc----------------
Q 044750 244 ----------------------------------SPNFIREIPENIGKLIHLKYLNLSELCIER---------------- 273 (658)
Q Consensus 244 ----------------------------------~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~---------------- 273 (658)
.++.+..+|..++++++|++|+|++|.++.
T Consensus 399 ~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp GSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred hhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence 013344489999999999999999999997
Q ss_pred --cchhhh--cCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCc--cCcCcCCCCC-------CCCccCceee
Q 044750 274 --LPETLC--ELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLK--YMPIGISKLT-------SLRTLEKFVV 340 (658)
Q Consensus 274 --lp~~i~--~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~--~~p~~i~~l~-------~L~~L~~~~~ 340 (658)
+|..++ ++++|++|+|++|.....+|..++++++|++|++++|..+. .+|..++.++ +|+.|++..
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~- 557 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY- 557 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS-
T ss_pred ccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC-
Confidence 999988 99999999999999889999999999999999999996344 5787665554 888885432
Q ss_pred ccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHHHhhh
Q 044750 341 GGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEA 420 (658)
Q Consensus 341 ~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (658)
+.. ..++. ...+.++++|+.+.+.... +. ..+ .+..+++|+.|+++++.+. .++..
T Consensus 558 -N~L-~~ip~-~~~l~~L~~L~~L~Ls~N~----l~-~lp-~~~~L~~L~~L~Ls~N~l~---------------~lp~~ 613 (876)
T 4ecn_A 558 -NNL-EEFPA-SASLQKMVKLGLLDCVHNK----VR-HLE-AFGTNVKLTDLKLDYNQIE---------------EIPED 613 (876)
T ss_dssp -SCC-CBCCC-HHHHTTCTTCCEEECTTSC----CC-BCC-CCCTTSEESEEECCSSCCS---------------CCCTT
T ss_pred -CcC-CccCC-hhhhhcCCCCCEEECCCCC----cc-cch-hhcCCCcceEEECcCCccc---------------cchHH
Confidence 222 22233 0124445555555555422 11 112 5778899999999988732 23334
Q ss_pred cCCCCC-CceEEEeeeCCCCCChhhhccc--ccceEEeeCCCCCCCCCCCC------Ccc-ccceeccccccceEeCccc
Q 044750 421 LQPHLN-VEELQICFYGGDIFPKWLTSLT--YLRELNLWFCFNCEHLPPLG------KLP-LEKLQLYILKSVKRVGNEF 490 (658)
Q Consensus 421 l~~~~~-L~~L~l~~~~~~~~p~~~~~l~--~L~~L~l~~~~~~~~l~~~~------~lp-L~~L~l~~~~~l~~~~~~~ 490 (658)
+...++ |+.|.+.++....+|.++..++ +|+.|++++|.....+|.+. ..+ |+.|.++++..-
T Consensus 614 l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~------- 686 (876)
T 4ecn_A 614 FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ------- 686 (876)
T ss_dssp SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-------
T ss_pred HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-------
Confidence 555677 9999999988888888777554 49999999998766554332 234 777777765421
Q ss_pred cCCCCCCCCCCCCCCCCCcc-cCCCCcceeeecCCcccccccccccc--ccccCcCcccceeeeeCCCCCCCCCcccc--
Q 044750 491 LGIEESSEDDPSSSSSSSSV-TAFPKLKSLDIGGMEELEEWNYRITR--KENISIMPRLSSLWIRGCPKLKALPDYLL-- 565 (658)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~L~~~~~~~~~--~~~~~~~~~L~~L~L~~c~~l~~lp~~~~-- 565 (658)
.+|..+ ..+++|+.|+|+++ .+..+...... ......+++|+.|+|++| .+..+|..+.
T Consensus 687 --------------~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~ 750 (876)
T 4ecn_A 687 --------------KFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRAT 750 (876)
T ss_dssp --------------SCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTT
T ss_pred --------------ccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhc
Confidence 122222 36899999999998 45533220000 001223459999999999 5668999887
Q ss_pred CCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccC------CCCccccCCCCCCCCCccEEEEecChh
Q 044750 566 QSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGY------CPKLKVLPNYLLRTTTLQELIIHRCPL 632 (658)
Q Consensus 566 ~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~------c~~l~~l~~~~~~l~~L~~L~l~~c~~ 632 (658)
.+++|+.|+|++|.... +| ..+..+++|+.|++++ |.....+|..+..+++|+.|++++|.-
T Consensus 751 ~l~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSS-FP----TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TCTTCCEEECCSSCCSS-CC----CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cCCCcCEEEeCCCCCCc-cc----hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 99999999999997654 77 4778999999999987 555667899999999999999999974
No 13
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.7e-27 Score=258.99 Aligned_cols=398 Identities=18% Similarity=0.125 Sum_probs=205.2
Q ss_pred EEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccc-cccccCC
Q 044750 180 RHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREI-PENIGKL 258 (658)
Q Consensus 180 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~l-p~~~~~l 258 (658)
+.+++.++.+..+|..+. ++|+.|++++|.+. ...+..|.++++|++|++ ++ +.+..+ |..+.++
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~---~~~~~~~~~l~~L~~L~L------s~---N~l~~~~~~~~~~l 99 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSIS---ELRMPDISFLSELRVLRL------SH---NRIRSLDFHVFLFN 99 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCC---CCCGGGTTTCTTCCEEEC------CS---CCCCEECTTTTTTC
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCcc---ccChhhhccCCCccEEEC------CC---CCCCcCCHHHhCCC
Confidence 566777777666665543 67777777777653 344456777777777777 33 445554 4567777
Q ss_pred CccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCC--CcccccccCCceeecCCcccCccCcCcCCCCCCC--Cc
Q 044750 259 IHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLREL--PAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSL--RT 334 (658)
Q Consensus 259 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L--~~ 334 (658)
++|++|++++|.++.+|.. .+++|++|++++|. +..+ |..++++++|++|++++|.... ..+..+++| ++
T Consensus 100 ~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~ 173 (562)
T 3a79_B 100 QDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSC 173 (562)
T ss_dssp TTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEE
T ss_pred CCCCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeE
Confidence 7777777777777777765 67777777777776 4443 4677777777777777764322 234445555 55
Q ss_pred cCceeeccCCCCCccccccccc-----------------------cCcccCCceecCccCC-CChhhHhhcccCccc---
Q 044750 335 LEKFVVGGGVDGGSTCRLESLK-----------------------NLQLLRKCGIEGLSNV-SHLDEAERIGLHNME--- 387 (658)
Q Consensus 335 L~~~~~~~~~~~~~~~~~~~l~-----------------------~L~~L~~l~i~~~~~~-~~~~~~~~~~l~~~~--- 387 (658)
|++...........+..+..+. .+++|+.+.+...... ... ......+..++
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l-~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL-MTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHH-HHHHHHHHSCSSCE
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchH-HHHHHHHhccCcce
Confidence 5432221100111111222211 2233333333221000 000 00011122233
Q ss_pred ------------------------CCCceEEEecCccCCCCcccc------cCch-----------hHHHHhhhcCCCCC
Q 044750 388 ------------------------NLLRLHLVFDGVVDGEGEEGR------RKNE-----------KDKQLLEALQPHLN 426 (658)
Q Consensus 388 ------------------------~L~~L~l~~~~~~~~~~~~~~------~~~~-----------~~~~~~~~l~~~~~ 426 (658)
+|+.|+++.+........... .... ........+....+
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCC
T ss_pred EEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCc
Confidence 444444444431100000000 0000 00000000000122
Q ss_pred CceEEEeeeCCCCCChhhhcccccceEEeeCCCCCCCCC-CCCCcc-ccceeccccccceEeCccccCCCCCCCCCCCCC
Q 044750 427 VEELQICFYGGDIFPKWLTSLTYLRELNLWFCFNCEHLP-PLGKLP-LEKLQLYILKSVKRVGNEFLGIEESSEDDPSSS 504 (658)
Q Consensus 427 L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~-~~~~lp-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 504 (658)
++.|.+.++.....+ ....+++|++|++++|...+..+ .++.++ |+.|.+.++.- +...
T Consensus 333 L~~L~l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~----------------- 393 (562)
T 3a79_B 333 IKMLSISDTPFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL-KNFF----------------- 393 (562)
T ss_dssp CSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC-CBTT-----------------
T ss_pred ceEEEccCCCccccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCc-CCcc-----------------
Confidence 333333333221111 01344555555555554443222 244455 55555554321 1000
Q ss_pred CCCCcccCCCCcceeeecCCccccc-cccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCC
Q 044750 505 SSSSSVTAFPKLKSLDIGGMEELEE-WNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEE 583 (658)
Q Consensus 505 ~~~~~~~~~~~L~~L~L~~~~~L~~-~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 583 (658)
.++..+..+++|++|+++++ .++. +. ...+..+++|++|++++|.....+|..+. ++|++|++++|. ++.
T Consensus 394 ~~~~~~~~l~~L~~L~l~~N-~l~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ 464 (562)
T 3a79_B 394 KVALMTKNMSSLETLDVSLN-SLNSHAY-----DRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMS 464 (562)
T ss_dssp HHHHTTTTCTTCCEEECTTS-CCBSCCS-----SCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCC
T ss_pred cchhhhcCCCCCCEEECCCC-cCCCccC-----hhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-Ccc
Confidence 11122456777777777776 2222 11 22355677888888887754444444432 688888888885 456
Q ss_pred CcCCCccccCCCCCCCeeeccCCCCccccCCC-CCCCCCccEEEEecCh
Q 044750 584 LPILEDRKTTDIPRLSSLEIGYCPKLKVLPNY-LLRTTTLQELIIHRCP 631 (658)
Q Consensus 584 ~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~ 631 (658)
+| ..+..+++|++|++++|. ++.+|.. +..+++|+.|++++||
T Consensus 465 ip----~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 465 IP----KDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CC----TTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred cC----hhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence 77 355688999999999985 6688876 7888999999999876
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=2e-27 Score=264.98 Aligned_cols=151 Identities=21% Similarity=0.212 Sum_probs=121.4
Q ss_pred CCCceEEEEEEcCCCCCCCc-cccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccc
Q 044750 175 FGDKVRHLGLNFEGGAPLPM-SIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPE 253 (658)
Q Consensus 175 ~~~~~~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~ 253 (658)
.+.+++++++.++.+..++. .+.++++|++|++++|... ...+..|.++++|++|++ ++ +.+..+|.
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L------~~---n~l~~l~~ 90 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS---KLEPELCQKLPMLKVLNL------QH---NELSQLSD 90 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC---CCCTTHHHHCTTCCEEEC------CS---SCCCCCCT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC---ccCHHHHhcccCcCEEEC------CC---CccCccCh
Confidence 46789999999999887665 5889999999999999754 455778899999999999 55 66777876
Q ss_pred -cccCCCccceeecCCccccccc-hhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcC--CCC
Q 044750 254 -NIGKLIHLKYLNLSELCIERLP-ETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGI--SKL 329 (658)
Q Consensus 254 -~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i--~~l 329 (658)
.++++++|++|++++|.++.+| ..++++++|++|++++|......|..++++++|++|++++|......+..+ ..+
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence 5899999999999999999776 578999999999999998556667778899999999999985443333333 245
Q ss_pred CCCCccCc
Q 044750 330 TSLRTLEK 337 (658)
Q Consensus 330 ~~L~~L~~ 337 (658)
++|+.|++
T Consensus 171 ~~L~~L~L 178 (680)
T 1ziw_A 171 SSLKKLEL 178 (680)
T ss_dssp CEESEEEC
T ss_pred ccccEEEC
Confidence 67777754
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=6.6e-28 Score=263.45 Aligned_cols=404 Identities=18% Similarity=0.086 Sum_probs=236.4
Q ss_pred CCceEEEEEEcCCCCCCC-ccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccc-
Q 044750 176 GDKVRHLGLNFEGGAPLP-MSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPE- 253 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~- 253 (658)
...++.+++.++.+..++ ..+.++++|++|++++|... ...+..|.++++|++|++ ++ +.+..++.
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L------~~---n~l~~l~~~ 118 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ---SLALGAFSGLSSLQKLVA------VE---TNLASLENF 118 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEEC------TT---SCCCCSTTC
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC---ccCHhhhcCccccccccc------cc---cccccCCCc
Confidence 567899999999887654 45889999999999999754 444578999999999999 54 56666665
Q ss_pred cccCCCccceeecCCccccc--cchhhhcCCCCcEeecCCCCCCCCCCcccccccCC----ceeecCCcccCccCcCcCC
Q 044750 254 NIGKLIHLKYLNLSELCIER--LPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNM----RSLLNGQTYSLKYMPIGIS 327 (658)
Q Consensus 254 ~~~~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L----~~L~l~~~~~~~~~p~~i~ 327 (658)
.++++++|++|++++|.++. +|..++++++|++|++++|......|..++.+++| +.|++++|......|..+.
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~ 198 (570)
T 2z63_A 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198 (570)
T ss_dssp SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT
T ss_pred cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhc
Confidence 58999999999999999884 78999999999999999998444456778888888 8899998854444343333
Q ss_pred CCCCCCccCceeecc--------------------------------------------------------CCCCCcccc
Q 044750 328 KLTSLRTLEKFVVGG--------------------------------------------------------GVDGGSTCR 351 (658)
Q Consensus 328 ~l~~L~~L~~~~~~~--------------------------------------------------------~~~~~~~~~ 351 (658)
.+ +|+.|++..... ......+
T Consensus 199 ~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-- 275 (570)
T 2z63_A 199 EI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII-- 275 (570)
T ss_dssp TC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST--
T ss_pred cC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch--
Confidence 32 455543211100 0000001
Q ss_pred ccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCc------hhHHHHhhhcCCCC
Q 044750 352 LESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKN------EKDKQLLEALQPHL 425 (658)
Q Consensus 352 ~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~ 425 (658)
..+..+++|+.+.+.+..-. . .+..+..+ +|+.|++..+............-. ..... ......++
T Consensus 276 -~~~~~l~~L~~L~l~~~~l~-~----l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~-~~~~~~~~ 347 (570)
T 2z63_A 276 -DLFNCLTNVSSFSLVSVTIE-R----VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN-AFSEVDLP 347 (570)
T ss_dssp -TTTGGGTTCSEEEEESCEEC-S----CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCC-BCCCCBCT
T ss_pred -hhhcCcCcccEEEecCccch-h----hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccc-ccccccCC
Confidence 12233444444444332110 0 11122333 445555544432110000000000 00000 00002234
Q ss_pred CCceEEEeeeCCCCC---ChhhhcccccceEEeeCCCCCCCCCCCCCcc-ccceeccccccceEeC-ccccCCCCC---C
Q 044750 426 NVEELQICFYGGDIF---PKWLTSLTYLRELNLWFCFNCEHLPPLGKLP-LEKLQLYILKSVKRVG-NEFLGIEES---S 497 (658)
Q Consensus 426 ~L~~L~l~~~~~~~~---p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lp-L~~L~l~~~~~l~~~~-~~~~~~~~~---~ 497 (658)
+|+.|++.++..... |..+..+++|++|++++|......+.++.++ |+.|.+.++....... ..+...... .
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence 555555554443322 3344445555555555553322111133344 4444444432111100 000000000 0
Q ss_pred CCCCC-CCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEc
Q 044750 498 EDDPS-SSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIY 576 (658)
Q Consensus 498 ~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~ 576 (658)
..... ....+..+..+++|++|++++|. +.+ ...+..+..+++|++|++++|......|..+..+++|++|+++
T Consensus 428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~----~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQE----NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCE-EGG----GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcCCcccccchhhhhcCCcCcEEECcCCc-Ccc----ccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 00000 11234456789999999999983 321 1235678899999999999996555568889999999999999
Q ss_pred cCCCCCCCcCCCccccCCCCCCCeeeccCCCCccc
Q 044750 577 FCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKV 611 (658)
Q Consensus 577 ~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~ 611 (658)
+|......| ..+..+++|+.|++++|+....
T Consensus 503 ~n~l~~~~~----~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 503 SNQLKSVPD----GIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp SSCCSCCCT----TTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcCCCCCH----HHhhcccCCcEEEecCCcccCC
Confidence 997554433 3578899999999999985443
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=5e-27 Score=258.26 Aligned_cols=428 Identities=15% Similarity=0.084 Sum_probs=204.5
Q ss_pred CCceEEEEEEcCCCCC-CCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccc-cc
Q 044750 176 GDKVRHLGLNFEGGAP-LPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREI-PE 253 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~l-p~ 253 (658)
...++.+.+.++.+.. .|..+.++++|++|++++|... ...+..|.++++|++|++ ++ +.+..+ |.
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L------~~---n~i~~l~~~ 123 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI---FMAETALSGPKALKHLFF------IQ---TGISSIDFI 123 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS---EECTTTTSSCTTCCEEEC------TT---SCCSCGGGS
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCccc---ccChhhhcccccccEeec------cc---cCcccCCcc
Confidence 4567777777777655 3556777888888888877653 344566777788888887 33 444444 45
Q ss_pred cccCCCccceeecCCccccccc-hhhhcCCCCcEeecCCCCCCCCCCcccccccCCc--eeecCCcccCccCcCcCCCCC
Q 044750 254 NIGKLIHLKYLNLSELCIERLP-ETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMR--SLLNGQTYSLKYMPIGISKLT 330 (658)
Q Consensus 254 ~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~--~L~l~~~~~~~~~p~~i~~l~ 330 (658)
.++++++|++|++++|.++.++ +.+..+++|++|++++|......|..++.+++|+ .|++++|......|..+ ...
T Consensus 124 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~-~~~ 202 (606)
T 3t6q_A 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF-DSA 202 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT-TTC
T ss_pred hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh-hhc
Confidence 5667777777777777776542 2333477777777777663333345566666666 66666664333222222 112
Q ss_pred CCCccCcee-------------------------------------------------eccCCCCCccccccccccCccc
Q 044750 331 SLRTLEKFV-------------------------------------------------VGGGVDGGSTCRLESLKNLQLL 361 (658)
Q Consensus 331 ~L~~L~~~~-------------------------------------------------~~~~~~~~~~~~~~~l~~L~~L 361 (658)
+|+.|++.. .........+ ...+..+++|
T Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L 280 (606)
T 3t6q_A 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS--SNTFHCFSGL 280 (606)
T ss_dssp EEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC--TTTTTTCTTC
T ss_pred cccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC--HHHhccccCC
Confidence 222211100 0000000000 0012222333
Q ss_pred CCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCc----------hhHHHH-hhhcCCCCCCceE
Q 044750 362 RKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKN----------EKDKQL-LEALQPHLNVEEL 430 (658)
Q Consensus 362 ~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~----------~~~~~~-~~~l~~~~~L~~L 430 (658)
+.+.+.+..- . ..+..+..+++|+.|+++++.+............ ...... ...+...++|+.|
T Consensus 281 ~~L~l~~n~l-~----~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 281 QELDLTATHL-S----ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp SEEECTTSCC-S----CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred CEEeccCCcc-C----CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 3333322110 0 0111233344444444443331100000000000 000000 0012233444444
Q ss_pred EEeeeCCCCC---ChhhhcccccceEEeeCCCCCCCCC-CCCCcc-ccceeccccccceEeCcc-ccCCCCC---CCCCC
Q 044750 431 QICFYGGDIF---PKWLTSLTYLRELNLWFCFNCEHLP-PLGKLP-LEKLQLYILKSVKRVGNE-FLGIEES---SEDDP 501 (658)
Q Consensus 431 ~l~~~~~~~~---p~~~~~l~~L~~L~l~~~~~~~~l~-~~~~lp-L~~L~l~~~~~l~~~~~~-~~~~~~~---~~~~~ 501 (658)
.+.++..... |..+..+++|++|++++|......+ .++.++ |+.|++.++......... +...... .....
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 4444433222 2233444444444444443322211 233344 444444433211110000 0000000 00000
Q ss_pred C-CCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCC
Q 044750 502 S-SSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDL 580 (658)
Q Consensus 502 ~-~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 580 (658)
. ....+..+..+++|++|+++++ .+..... ..+..+..+++|++|++++|......|..+..+++|++|++++|..
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQGN-HFPKGNI--QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECTTC-BCGGGEE--CSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ccCCcCHHHHhCCCCCCEEECCCC-CCCcccc--ccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence 0 1112334556777777777776 2222110 1123456677788888887754444566677778888888888776
Q ss_pred CCCCcCCCccccCCCCCCCeeeccCCCCccccCCCCCCCCCccEEEEecCh
Q 044750 581 LEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 581 l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 631 (658)
....| ..+..+++| .|++++|......|..+..+++|+.|++++||
T Consensus 513 ~~~~~----~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 513 TSSSI----EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CGGGG----GGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred CcCCh----hHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 55555 466777778 88888886544445556677888888888776
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.6e-26 Score=262.69 Aligned_cols=416 Identities=16% Similarity=0.102 Sum_probs=237.9
Q ss_pred CCCceEEEEEEcCCCCCC-CccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccc-c
Q 044750 175 FGDKVRHLGLNFEGGAPL-PMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREI-P 252 (658)
Q Consensus 175 ~~~~~~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~l-p 252 (658)
.+..+++++++++.+..+ +..+.++++|+.|++++|... ....+..|.++++|++|+| ++ +.+..+ |
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~--~~i~~~~f~~L~~L~~L~L------s~---N~l~~~~p 90 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP--LTIDKEAFRNLPNLRILDL------GS---SKIYFLHP 90 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC--CEECTTTTSSCTTCCEEEC------TT---CCCCEECT
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc--cccCHHHhcCCCCCCEEEC------CC---CcCcccCH
Confidence 578899999999988764 567889999999999998532 1344678899999999999 44 445544 7
Q ss_pred ccccCCCccceeecCCccccc-cchh--hhcCCCCcEeecCCCCCCCCCC-cccccccCCceeecCCcccCccCcCcCCC
Q 044750 253 ENIGKLIHLKYLNLSELCIER-LPET--LCELYNLRKLDIRRCPNLRELP-AGIGKLMNMRSLLNGQTYSLKYMPIGISK 328 (658)
Q Consensus 253 ~~~~~l~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~ 328 (658)
..++++++|++|+|++|.++. +|.. ++++++|++|++++|......| ..++++++|++|++++|......|..++.
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 889999999999999999884 5655 8899999999999988444333 57889999999999988655555555555
Q ss_pred C--CCCCccCceeeccCCCCCcccccccccc------C------------------------------------------
Q 044750 329 L--TSLRTLEKFVVGGGVDGGSTCRLESLKN------L------------------------------------------ 358 (658)
Q Consensus 329 l--~~L~~L~~~~~~~~~~~~~~~~~~~l~~------L------------------------------------------ 358 (658)
+ ++|+.|++.... .....+..+..+.+ |
T Consensus 171 l~~~~L~~L~L~~n~--l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 171 LQGKTLSFFSLAANS--LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp HHHCSSCCCEECCSB--SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred ccCCccceEECCCCc--cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 5 556655432211 11111111111110 1
Q ss_pred -----------------cccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHHHhhhc
Q 044750 359 -----------------QLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEAL 421 (658)
Q Consensus 359 -----------------~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 421 (658)
.+|+.+.+... .........+..+++|+.|+++.+.+... ....+
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--------------~~~~~ 310 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHG----FVFSLNSRVFETLKDLKVLNLAYNKINKI--------------ADEAF 310 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTC----CCCEECSCCSSSCCCCCEEEEESCCCCEE--------------CTTTT
T ss_pred ccccCCCChhhhhccccCCccEEECCCC----cccccChhhhhcCCCCCEEECCCCcCCCC--------------ChHHh
Confidence 11111111110 01111123345566667777766652111 11233
Q ss_pred CCCCCCceEEEeeeCCCCC-ChhhhcccccceEEeeCCCCCCCCC-CCCCcc-ccceecccccc-----------ceEeC
Q 044750 422 QPHLNVEELQICFYGGDIF-PKWLTSLTYLRELNLWFCFNCEHLP-PLGKLP-LEKLQLYILKS-----------VKRVG 487 (658)
Q Consensus 422 ~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~l~-~~~~lp-L~~L~l~~~~~-----------l~~~~ 487 (658)
...++|+.|.++++....+ |..+..+++|+.|++++|......+ .++.++ |+.|.++++.- +....
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~ 390 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390 (844)
T ss_dssp TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEES
T ss_pred cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCC
Confidence 4556777777777665443 5566677777777777775432221 245566 77777765431 11112
Q ss_pred ccccCCCCCC-------CCCCCCCC--CCCcccCCCCcceeeecCCcccccccc-------------------------c
Q 044750 488 NEFLGIEESS-------EDDPSSSS--SSSSVTAFPKLKSLDIGGMEELEEWNY-------------------------R 533 (658)
Q Consensus 488 ~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~L~~~~~-------------------------~ 533 (658)
+.+....... ........ .+..+..+++|++|+++++ .+..... .
T Consensus 391 N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~ 469 (844)
T 3j0a_A 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469 (844)
T ss_dssp CCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCS
T ss_pred CCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCCCcccccccc
Confidence 2221111000 00000000 0011224556666666554 2221100 0
Q ss_pred cccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccC
Q 044750 534 ITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLP 613 (658)
Q Consensus 534 ~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~ 613 (658)
...+..+..+++|+.|+|++|......|..+..+++|++|+|++|.. ..+|. ..+. ++|+.|++++|......|
T Consensus 470 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~---~~~~--~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL-TVLSH---NDLP--ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp CCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCC-SSCCC---CCCC--SCCCEEEEEEECCCCCCS
T ss_pred ccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCC-CccCh---hhhh--ccccEEECCCCcCCCCCh
Confidence 11123355667777777777643333344466777888888887754 33441 1121 678888888876444444
Q ss_pred CCCCCCCCccEEEEecCh
Q 044750 614 NYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 614 ~~~~~l~~L~~L~l~~c~ 631 (658)
.. +++|+.|++++||
T Consensus 544 ~~---~~~L~~l~l~~Np 558 (844)
T 3j0a_A 544 DV---FVSLSVLDITHNK 558 (844)
T ss_dssp CC---CSSCCEEEEEEEC
T ss_pred hH---hCCcCEEEecCCC
Confidence 43 3578888888776
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=7.2e-26 Score=240.02 Aligned_cols=341 Identities=23% Similarity=0.231 Sum_probs=188.8
Q ss_pred CCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccchhh
Q 044750 199 LNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPETL 278 (658)
Q Consensus 199 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i 278 (658)
++++++|.+.++... .++ .+..+++|++|++ ++ +.+..+|. +.++++|++|++++|.++.++. +
T Consensus 45 l~~l~~L~l~~~~i~----~l~-~~~~l~~L~~L~L------s~---n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~ 108 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK----SID-GVEYLNNLTQINF------SN---NQLTDITP-LKNLTKLVDILMNNNQIADITP-L 108 (466)
T ss_dssp HHTCCEEECCSSCCC----CCT-TGGGCTTCCEEEC------CS---SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred hccccEEecCCCCCc----cCc-chhhhcCCCEEEC------CC---CccCCchh-hhccccCCEEECCCCccccChh-h
Confidence 345555555554421 111 2445555555555 22 33444443 5555555555555555555544 5
Q ss_pred hcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccCceeeccCCCCCccccccccccC
Q 044750 279 CELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLEKFVVGGGVDGGSTCRLESLKNL 358 (658)
Q Consensus 279 ~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L 358 (658)
+++++|++|++++|. +..+|. +..+++|++|++++|. +..+| .++.+++|+.|.+. +.. ..+..+.++
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~---~~~-----~~~~~~~~l 176 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFG---NQV-----TDLKPLANL 176 (466)
T ss_dssp TTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEE---ESC-----CCCGGGTTC
T ss_pred cCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecC---Ccc-----cCchhhccC
Confidence 555555555555554 444443 5555555555555553 22333 24555555555421 111 011123334
Q ss_pred cccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHHHhhhcCCCCCCceEEEeeeCCC
Q 044750 359 QLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLNVEELQICFYGGD 438 (658)
Q Consensus 359 ~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 438 (658)
++|+.+.+.+..- ... ..+..+++|+.|+++++.+... ..+..+++|+.|.+.++...
T Consensus 177 ~~L~~L~l~~n~l-~~~-----~~l~~l~~L~~L~l~~n~l~~~----------------~~~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 177 TTLERLDISSNKV-SDI-----SVLAKLTNLESLIATNNQISDI----------------TPLGILTNLDELSLNGNQLK 234 (466)
T ss_dssp TTCCEEECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCCCC----------------GGGGGCTTCCEEECCSSCCC
T ss_pred CCCCEEECcCCcC-CCC-----hhhccCCCCCEEEecCCccccc----------------ccccccCCCCEEECCCCCcc
Confidence 4444444433211 111 1245566777777766652110 01233567777777776665
Q ss_pred CCChhhhcccccceEEeeCCCCCCCCCCCCCcc-ccceeccccccceEeCccccCCCCCCCCCCCCCCCCCcccCCCCcc
Q 044750 439 IFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLP-LEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLK 517 (658)
Q Consensus 439 ~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lp-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 517 (658)
.+ ..+..+++|++|++++|.... ++.+..++ |+.|.+.++..- + ++. +..+++|+
T Consensus 235 ~~-~~l~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~--------~-------------~~~-~~~l~~L~ 290 (466)
T 1o6v_A 235 DI-GTLASLTNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQIS--------N-------------ISP-LAGLTALT 290 (466)
T ss_dssp CC-GGGGGCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCC--------C-------------CGG-GTTCTTCS
T ss_pred cc-hhhhcCCCCCEEECCCCcccc-chhhhcCCCCCEEECCCCccC--------c-------------ccc-ccCCCccC
Confidence 54 346677788888888875443 33356667 777777765321 1 011 34678888
Q ss_pred eeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCccccCCCCC
Q 044750 518 SLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILEDRKTTDIPR 597 (658)
Q Consensus 518 ~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~ 597 (658)
+|+++++ .++.+. .+..+++|+.|++++|. +..++. +..+++|++|++++|.. ..++ .+..+++
T Consensus 291 ~L~L~~n-~l~~~~-------~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l-~~~~-----~l~~l~~ 354 (466)
T 1o6v_A 291 NLELNEN-QLEDIS-------PISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNNKV-SDVS-----SLANLTN 354 (466)
T ss_dssp EEECCSS-CCSCCG-------GGGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSSCC-CCCG-----GGTTCTT
T ss_pred eEEcCCC-cccCch-------hhcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCCcc-CCch-----hhccCCC
Confidence 8888877 333321 25578888888888874 443433 56788888888888853 3344 5677888
Q ss_pred CCeeeccCCCCccccCCCCCCCCCccEEEEecCh
Q 044750 598 LSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 598 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 631 (658)
|+.|++++|+. ...+. +..+++|+.|++++|+
T Consensus 355 L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 355 INWLSAGHNQI-SDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCEEECCSSCC-CBCGG-GTTCTTCCEEECCCEE
T ss_pred CCEEeCCCCcc-Cccch-hhcCCCCCEEeccCCc
Confidence 88888888864 33333 6777888888888775
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=4.3e-26 Score=247.71 Aligned_cols=400 Identities=20% Similarity=0.171 Sum_probs=249.2
Q ss_pred EEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc-ccccCCCcc
Q 044750 183 GLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP-ENIGKLIHL 261 (658)
Q Consensus 183 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp-~~~~~l~~L 261 (658)
+...+.+..+|..+. ++|++|++++|... ...+..|.++++|++|++ ++ +.+..++ ..++++++|
T Consensus 11 ~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L------s~---n~i~~~~~~~~~~l~~L 76 (549)
T 2z81_A 11 DGRSRSFTSIPSGLT--AAMKSLDLSFNKIT---YIGHGDLRACANLQVLIL------KS---SRINTIEGDAFYSLGSL 76 (549)
T ss_dssp ECTTSCCSSCCSCCC--TTCCEEECCSSCCC---EECSSTTSSCTTCCEEEC------TT---SCCCEECTTTTTTCTTC
T ss_pred ECCCCccccccccCC--CCccEEECcCCccC---ccChhhhhcCCcccEEEC------CC---CCcCccChhhccccccC
Confidence 444556666776653 79999999999854 444678899999999999 44 5555555 679999999
Q ss_pred ceeecCCccccccchh-hhcCCCCcEeecCCCCCCC-CCCcccccccCCceeecCCcccCccCc-CcCCCCCCCCccCce
Q 044750 262 KYLNLSELCIERLPET-LCELYNLRKLDIRRCPNLR-ELPAGIGKLMNMRSLLNGQTYSLKYMP-IGISKLTSLRTLEKF 338 (658)
Q Consensus 262 ~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~ 338 (658)
++|++++|.++.+|.. ++++++|++|++++|.... ..|..++.+++|++|++++|.....+| ..++.+++|++|++.
T Consensus 77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence 9999999999987765 9999999999999998333 457889999999999999997677776 468999999999754
Q ss_pred eeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccc----------
Q 044750 339 VVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGR---------- 408 (658)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---------- 408 (658)
.. ......+. .+..+++|+.+.+..... ..... ..+..+++|+.|+++++...........
T Consensus 157 ~n--~l~~~~~~---~l~~l~~L~~L~l~~n~~-~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 157 AL--SLRNYQSQ---SLKSIRDIHHLTLHLSES-AFLLE---IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp ET--TCCEECTT---TTTTCSEEEEEEEECSBS-TTHHH---HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred CC--cccccChh---hhhccccCceEecccCcc-cccch---hhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 32 22111233 344455555555544321 12221 1234577888888888764332100000
Q ss_pred -------cCchhHHHHhhhcCCCCCCceEEEeeeCCCCC------------------------------------Chhhh
Q 044750 409 -------RKNEKDKQLLEALQPHLNVEELQICFYGGDIF------------------------------------PKWLT 445 (658)
Q Consensus 409 -------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------------------------------------p~~~~ 445 (658)
........+...+...++++.+.+.++....+ +....
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence 00011122222233344555555544321111 11112
Q ss_pred cccccceEEeeCCCCCCCCCC-C-CCcc-ccceeccccccceEeCccccCCCCCCCCCCCCCCCCCcccCCCCcceeeec
Q 044750 446 SLTYLRELNLWFCFNCEHLPP-L-GKLP-LEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIG 522 (658)
Q Consensus 446 ~l~~L~~L~l~~~~~~~~l~~-~-~~lp-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 522 (658)
..++|++|++++|.. ..+|. + +.++ |+.|+++++......... +..+..+++|++|+++
T Consensus 308 ~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------------~~~~~~l~~L~~L~Ls 369 (549)
T 2z81_A 308 LLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKN-----------------SACKGAWPSLQTLVLS 369 (549)
T ss_dssp HSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHH-----------------HTCTTSSTTCCEEECT
T ss_pred hcccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccc-----------------hhhhhccccCcEEEcc
Confidence 334566666666643 23332 1 2455 677776665422111000 1113467788888888
Q ss_pred CCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcC-----CCccc------
Q 044750 523 GMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPI-----LEDRK------ 591 (658)
Q Consensus 523 ~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~-----l~~~~------ 591 (658)
+| .++.+.. ....+..+++|++|++++| .++.+|..+..+++|++|++++|.. ..+|. ++.+.
T Consensus 370 ~N-~l~~~~~---~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l-~~l~~~~~~~L~~L~Ls~N~l 443 (549)
T 2z81_A 370 QN-HLRSMQK---TGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGI-RVVKTCIPQTLEVLDVSNNNL 443 (549)
T ss_dssp TS-CCCCHHH---HHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSCC-SCCCTTSCTTCSEEECCSSCC
T ss_pred CC-ccccccc---chhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCCc-ccccchhcCCceEEECCCCCh
Confidence 77 3433211 0123557788888888887 5567777777778888888888763 33331 11111
Q ss_pred ---cCCCCCCCeeeccCCCCccccCCCCCCCCCccEEEEecCh
Q 044750 592 ---TTDIPRLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 592 ---~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 631 (658)
...+++|++|++++|. ++.+|. ...+++|+.|++++|.
T Consensus 444 ~~~~~~l~~L~~L~Ls~N~-l~~ip~-~~~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 444 DSFSLFLPRLQELYISRNK-LKTLPD-ASLFPVLLVMKISRNQ 484 (549)
T ss_dssp SCCCCCCTTCCEEECCSSC-CSSCCC-GGGCTTCCEEECCSSC
T ss_pred hhhcccCChhcEEECCCCc-cCcCCC-cccCccCCEEecCCCc
Confidence 1367889999999984 667877 4567899999999884
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.3e-25 Score=237.85 Aligned_cols=111 Identities=18% Similarity=0.226 Sum_probs=73.5
Q ss_pred ccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCc
Q 044750 510 VTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILED 589 (658)
Q Consensus 510 ~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~ 589 (658)
+..+++|++|+++++ .+.. ..+..+..+++|++|++++|......|..+..+++|++|++++|......|
T Consensus 295 ~~~l~~L~~L~Ls~n-~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---- 364 (455)
T 3v47_A 295 FSHFTDLEQLTLAQN-EINK-----IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD---- 364 (455)
T ss_dssp TTTCTTCCEEECTTS-CCCE-----ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT----
T ss_pred cccCCCCCEEECCCC-cccc-----cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh----
Confidence 456777888887776 2322 224456677788888888774433345666777888888888876544444
Q ss_pred cccCCCCCCCeeeccCCCCccccCC-CCCCCCCccEEEEecCh
Q 044750 590 RKTTDIPRLSSLEIGYCPKLKVLPN-YLLRTTTLQELIIHRCP 631 (658)
Q Consensus 590 ~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~ 631 (658)
..+..+++|++|++++|. ++.+|. .+..+++|+.|++++||
T Consensus 365 ~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 365 QSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence 356677888888888875 445554 45677788888887654
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=2.5e-25 Score=248.09 Aligned_cols=415 Identities=16% Similarity=0.106 Sum_probs=237.6
Q ss_pred EEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccc-cccccCCC
Q 044750 181 HLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREI-PENIGKLI 259 (658)
Q Consensus 181 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~l-p~~~~~l~ 259 (658)
.++.++.....+|..+. ++++.|++++|... ...+..|.++++|++|++ ++ +.+..+ |..+++++
T Consensus 8 ~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L------s~---n~l~~~~~~~~~~l~ 73 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP--TNITVLNLTHNQLR---RLPAANFTRYSQLTSLDV------GF---NTISKLEPELCQKLP 73 (680)
T ss_dssp EEECCSSCCSSCCSCSC--TTCSEEECCSSCCC---CCCGGGGGGGTTCSEEEC------CS---SCCCCCCTTHHHHCT
T ss_pred eeECCCCCccccccccC--CCCcEEECCCCCCC---CcCHHHHhCCCcCcEEEC------CC---CccCccCHHHHhccc
Confidence 45566666666776654 79999999999754 455667999999999999 43 444444 67789999
Q ss_pred ccceeecCCccccccch-hhhcCCCCcEeecCCCCCCCCCC-cccccccCCceeecCCcccCccCcCcCCCCCCCCccCc
Q 044750 260 HLKYLNLSELCIERLPE-TLCELYNLRKLDIRRCPNLRELP-AGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLEK 337 (658)
Q Consensus 260 ~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 337 (658)
+|++|++++|.++.+|. .++++++|++|++++|. +..+| ..++++++|++|++++|......|..++.+++|++|++
T Consensus 74 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 152 (680)
T 1ziw_A 74 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL 152 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEEC
T ss_pred CcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEc
Confidence 99999999999999987 59999999999999998 55555 67999999999999999766666777899999999964
Q ss_pred eeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHHH
Q 044750 338 FVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQL 417 (658)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 417 (658)
... ......+..+. ...++.|+.+.+.... +.......+..+.+|+.+.+..+... .......
T Consensus 153 ~~n--~l~~~~~~~~~-~~~~~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~l~~~~l~----------~~~~~~~ 215 (680)
T 1ziw_A 153 SNN--KIQALKSEELD-IFANSSLKKLELSSNQ----IKEFSPGCFHAIGRLFGLFLNNVQLG----------PSLTEKL 215 (680)
T ss_dssp CSS--CCCCBCHHHHG-GGTTCEESEEECTTCC----CCCBCTTGGGGSSEECEEECTTCCCH----------HHHHHHH
T ss_pred cCC--cccccCHHHhh-ccccccccEEECCCCc----ccccChhhhhhhhhhhhhhccccccC----------hhhHHHH
Confidence 322 11111111111 1122445554444321 11111122334444444444322200 0000000
Q ss_pred h-----------------------hhcCCC--CCCceEEEeeeCCCCC-ChhhhcccccceEEeeCCCCCCCCC-CCCCc
Q 044750 418 L-----------------------EALQPH--LNVEELQICFYGGDIF-PKWLTSLTYLRELNLWFCFNCEHLP-PLGKL 470 (658)
Q Consensus 418 ~-----------------------~~l~~~--~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~l~-~~~~l 470 (658)
. ..+... ++|+.|++.++....+ |.++..+++|++|++++|......+ .++.+
T Consensus 216 ~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (680)
T 1ziw_A 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295 (680)
T ss_dssp HHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTC
T ss_pred HHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCC
Confidence 0 011111 3466666665544332 3445566666666666665443322 34555
Q ss_pred c-ccceeccccccc--------eEeCc-cccCCCCC---CCCCCCC-CCCCCcccCCCCcceeeecCCc-----------
Q 044750 471 P-LEKLQLYILKSV--------KRVGN-EFLGIEES---SEDDPSS-SSSSSSVTAFPKLKSLDIGGME----------- 525 (658)
Q Consensus 471 p-L~~L~l~~~~~l--------~~~~~-~~~~~~~~---~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~----------- 525 (658)
+ |+.|.+.++..- ..+.. .+...... ....... ...+..+..+++|++|+++++.
T Consensus 296 ~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f 375 (680)
T 1ziw_A 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375 (680)
T ss_dssp TTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTT
T ss_pred CCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhh
Confidence 5 666666542211 00000 01110100 0111111 1123345667777777776652
Q ss_pred ------ccccccc-----ccccccccCcCcccceeeeeCCCCCCCCC-ccccCCCCcceEEEccCCCCCCCcCCCccccC
Q 044750 526 ------ELEEWNY-----RITRKENISIMPRLSSLWIRGCPKLKALP-DYLLQSTALQELRIYFCDLLEELPILEDRKTT 593 (658)
Q Consensus 526 ------~L~~~~~-----~~~~~~~~~~~~~L~~L~L~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~ 593 (658)
.|+.+.. ....+..+..+++|+.|++++|.....+| ..+..+++|++|++++|......+ ..+.
T Consensus 376 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~ 451 (680)
T 1ziw_A 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR----NSFA 451 (680)
T ss_dssp GGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT----TTTT
T ss_pred cccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh----hhhh
Confidence 1111111 11112344455666666666654333343 345556666666666665333222 3456
Q ss_pred CCCCCCeeeccCCCC--ccccCCCCCCCCCccEEEEecCh
Q 044750 594 DIPRLSSLEIGYCPK--LKVLPNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 594 ~~~~L~~L~l~~c~~--l~~l~~~~~~l~~L~~L~l~~c~ 631 (658)
.+|+|+.|++++|.. +..+|..+..+++|+.|++++|.
T Consensus 452 ~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~ 491 (680)
T 1ziw_A 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491 (680)
T ss_dssp TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC
T ss_pred cCcccccchhccccccccccCCcccccCCCCCEEECCCCC
Confidence 677788888877753 24567788888999999998874
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=2e-25 Score=253.67 Aligned_cols=145 Identities=21% Similarity=0.182 Sum_probs=116.8
Q ss_pred EEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccc-cccccCC
Q 044750 180 RHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREI-PENIGKL 258 (658)
Q Consensus 180 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~l-p~~~~~l 258 (658)
+.+..++++...+|. -.++++.|++++|.+. ...+..|.++++|++|+++ + +.....+ |..++++
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~---~i~~~~~~~l~~L~~LdLs------~--n~~~~~i~~~~f~~L 72 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIR---TVTASSFPFLEQLQLLELG------S--QYTPLTIDKEAFRNL 72 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCC---EECSSSCSSCCSCSEEEEC------T--TCCCCEECTTTTSSC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCC---ccChhHCcccccCeEEeCC------C--CCCccccCHHHhcCC
Confidence 345555666666776 4589999999999864 4556789999999999993 3 2345566 6789999
Q ss_pred CccceeecCCcccccc-chhhhcCCCCcEeecCCCCCCCCCCcc--cccccCCceeecCCcccCccCc-CcCCCCCCCCc
Q 044750 259 IHLKYLNLSELCIERL-PETLCELYNLRKLDIRRCPNLRELPAG--IGKLMNMRSLLNGQTYSLKYMP-IGISKLTSLRT 334 (658)
Q Consensus 259 ~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~--i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~ 334 (658)
++|++|+|++|.+..+ |..++++++|++|+|++|.....+|.. ++.+++|++|++++|......| ..++++++|++
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 9999999999999955 789999999999999999855556765 8999999999999996555444 46899999999
Q ss_pred cCce
Q 044750 335 LEKF 338 (658)
Q Consensus 335 L~~~ 338 (658)
|++.
T Consensus 153 L~Ls 156 (844)
T 3j0a_A 153 IDFS 156 (844)
T ss_dssp EEEE
T ss_pred EECC
Confidence 9743
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=1.5e-24 Score=240.24 Aligned_cols=437 Identities=16% Similarity=0.098 Sum_probs=256.1
Q ss_pred cCCCceEEEEEEcCCCCCCCc-cccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc
Q 044750 174 SFGDKVRHLGLNFEGGAPLPM-SIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP 252 (658)
Q Consensus 174 ~~~~~~~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp 252 (658)
..+..+++++++++.+..++. .|.++++|+.|++++|.+. ...++.|.++++|++|+| ++ +.++.+|
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~---~i~~~~f~~L~~L~~L~L------s~---N~l~~l~ 116 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLIL------TG---NPIQSLA 116 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEEC------TT---CCCCEEC
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC---CcChhHhcCCCCCCEEEc------cC---CcCCCCC
Confidence 457789999999999988664 6899999999999999864 455678999999999999 55 6778887
Q ss_pred c-cccCCCccceeecCCccccccch-hhhcCCCCcEeecCCCCCCC-CCCcccccccCCceeecCCcccCccCcCcCCCC
Q 044750 253 E-NIGKLIHLKYLNLSELCIERLPE-TLCELYNLRKLDIRRCPNLR-ELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKL 329 (658)
Q Consensus 253 ~-~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l 329 (658)
. .|.++++|++|++++|.++.+|. .++++++|++|++++|.... .+|..++.+++|++|++++|......|..+..+
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 5 57999999999999999998886 58999999999999998433 468889999999999999996544444444443
Q ss_pred CCCCccCceee-------------------------ccCCC---------------------------CC-ccccccccc
Q 044750 330 TSLRTLEKFVV-------------------------GGGVD---------------------------GG-STCRLESLK 356 (658)
Q Consensus 330 ~~L~~L~~~~~-------------------------~~~~~---------------------------~~-~~~~~~~l~ 356 (658)
.+++.+..... .+... .. .......+.
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 276 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 276 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred hhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence 33332111000 00000 00 000000000
Q ss_pred cCcccCCceec----------------CccCCCC-----hhhHhhcccCcccCCCceEEEecCccCCCCcccccCch---
Q 044750 357 NLQLLRKCGIE----------------GLSNVSH-----LDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNE--- 412 (658)
Q Consensus 357 ~L~~L~~l~i~----------------~~~~~~~-----~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--- 412 (658)
.+..+....+. ....... ........+.....++.|++..+............-..
T Consensus 277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l 356 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 356 (635)
T ss_dssp GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEE
T ss_pred cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccc
Confidence 00000000000 0000000 00001112344566777777765422111000000000
Q ss_pred --hHHHHhhhcCCCCCCceEEEeeeCCCC---CChhhhcccccceEEeeCCCCCCCCCCCCCcc-ccceeccccccceEe
Q 044750 413 --KDKQLLEALQPHLNVEELQICFYGGDI---FPKWLTSLTYLRELNLWFCFNCEHLPPLGKLP-LEKLQLYILKSVKRV 486 (658)
Q Consensus 413 --~~~~~~~~l~~~~~L~~L~l~~~~~~~---~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lp-L~~L~l~~~~~l~~~ 486 (658)
............++++.+.+....... .+.....+.+|+.+++..+......+....++ |+.+.+..+......
T Consensus 357 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 436 (635)
T 4g8a_A 357 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 436 (635)
T ss_dssp ESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTT
T ss_pred ccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccc
Confidence 000000011123445555544432211 23333344555555555554332222333444 555555433222111
Q ss_pred Ccc-ccCCCCCCC----CCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCC
Q 044750 487 GNE-FLGIEESSE----DDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALP 561 (658)
Q Consensus 487 ~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp 561 (658)
... +........ .+......+..+..+++|+.|+++++.....+ .+..+..+++|++|+|++|......|
T Consensus 437 ~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~-----~~~~~~~l~~L~~L~Ls~N~L~~l~~ 511 (635)
T 4g8a_A 437 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-----LPDIFTELRNLTFLDLSQCQLEQLSP 511 (635)
T ss_dssp SSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE-----ECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cccccccccccccccccccccccccccccccchhhhhhhhhhccccccc-----CchhhhhccccCEEECCCCccCCcCh
Confidence 100 000000000 00001122344567889999999988544332 25667889999999999995444457
Q ss_pred ccccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCCCCCCC-CCccEEEEecCh
Q 044750 562 DYLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPNYLLRT-TTLQELIIHRCP 631 (658)
Q Consensus 562 ~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l-~~L~~L~l~~c~ 631 (658)
..+..+++|++|+|++|......| ..+..+++|++|++++|......|..+..+ ++|+.|++++||
T Consensus 512 ~~f~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 512 TAFNSLSSLQVLNMSHNNFFSLDT----FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCC----GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred HHHcCCCCCCEEECCCCcCCCCCh----hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 788999999999999997544333 567899999999999997655667778887 689999999876
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=2.7e-25 Score=230.09 Aligned_cols=305 Identities=20% Similarity=0.184 Sum_probs=178.5
Q ss_pred CCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc-ccccCCCccceeecCCccccccch
Q 044750 198 GLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP-ENIGKLIHLKYLNLSELCIERLPE 276 (658)
Q Consensus 198 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~i~~lp~ 276 (658)
.+++++.|.+.++... ..++..|..+++|++|++ ++ +.+..++ ..+..+++|++|++++|.++.+|+
T Consensus 43 ~l~~l~~l~l~~~~l~---~l~~~~~~~l~~L~~L~L------~~---n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 110 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNL------ND---LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110 (390)
T ss_dssp GGCCCSEEEEESCEES---EECTHHHHHCCCCSEEEC------TT---SCCCEECTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccCCceEEEecCCchh---hCChhHhcccccCcEEEC------CC---CcccccChhhccCCCCcCEEECCCCCCCcCCH
Confidence 5678888888887643 333455788888888888 44 5555555 367888888888888888886654
Q ss_pred -hhhcCCCCcEeecCCCCCCCCCCccc-ccccCCceeecCCcccCccCcCcCCCCCCCCccCceeeccCCCCCccccccc
Q 044750 277 -TLCELYNLRKLDIRRCPNLRELPAGI-GKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLEKFVVGGGVDGGSTCRLES 354 (658)
Q Consensus 277 -~i~~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~ 354 (658)
.++++++|++|++++|. +..+|..+ ..+++|++|++++|......|..++.+++|++|++....... . .
T Consensus 111 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~---~ 181 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-----V---D 181 (390)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-----C---C
T ss_pred HHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-----c---c
Confidence 57888888888888887 66777664 788888888888885544445557778888877532111000 0 0
Q ss_pred cccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHHHhhhcCCCCCCceEEEee
Q 044750 355 LKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLNVEELQICF 434 (658)
Q Consensus 355 l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 434 (658)
+..+++|+.++++++.. ..+..+++++.|.+.+
T Consensus 182 ----------------------------~~~l~~L~~L~l~~n~l-------------------~~~~~~~~L~~L~l~~ 214 (390)
T 3o6n_A 182 ----------------------------LSLIPSLFHANVSYNLL-------------------STLAIPIAVEELDASH 214 (390)
T ss_dssp ----------------------------GGGCTTCSEEECCSSCC-------------------SEEECCSSCSEEECCS
T ss_pred ----------------------------cccccccceeecccccc-------------------cccCCCCcceEEECCC
Confidence 12233444444443331 0111223344444444
Q ss_pred eCCCCCChhhhcccccceEEeeCCCCCCCCCCCCCccccceeccccccceEeCccccCCCCCCCCCCCCCCCCCcccCCC
Q 044750 435 YGGDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLPLEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVTAFP 514 (658)
Q Consensus 435 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lpL~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (658)
+....+|.. .+++|+.|++++|.... .+. +..++
T Consensus 215 n~l~~~~~~--~~~~L~~L~l~~n~l~~-~~~-------------------------------------------l~~l~ 248 (390)
T 3o6n_A 215 NSINVVRGP--VNVELTILKLQHNNLTD-TAW-------------------------------------------LLNYP 248 (390)
T ss_dssp SCCCEEECC--CCSSCCEEECCSSCCCC-CGG-------------------------------------------GGGCT
T ss_pred Ceeeecccc--ccccccEEECCCCCCcc-cHH-------------------------------------------HcCCC
Confidence 433332221 23455555555553211 112 33566
Q ss_pred CcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCccccCC
Q 044750 515 KLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILEDRKTTD 594 (658)
Q Consensus 515 ~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~ 594 (658)
+|++|+++++ .++.. .+..+..+++|++|++++| .++.+|..+..+++|++|++++|.. ..+| ..+..
T Consensus 249 ~L~~L~Ls~n-~l~~~-----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l-~~~~----~~~~~ 316 (390)
T 3o6n_A 249 GLVEVDLSYN-ELEKI-----MYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHL-LHVE----RNQPQ 316 (390)
T ss_dssp TCSEEECCSS-CCCEE-----ESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCC-CCCG----GGHHH
T ss_pred CccEEECCCC-cCCCc-----ChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcc-eecC----ccccc
Confidence 6666666665 22221 2344556666666666665 3444555555666666666666643 3444 24455
Q ss_pred CCCCCeeeccCCCCccccCCCCCCCCCccEEEEecCh
Q 044750 595 IPRLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 595 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 631 (658)
+++|+.|++++|+ ++.++ +..+++|+.|++++||
T Consensus 317 l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 317 FDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp HTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred cCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCC
Confidence 6666777776665 44443 4455667777776665
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.5e-24 Score=233.77 Aligned_cols=372 Identities=16% Similarity=0.096 Sum_probs=224.5
Q ss_pred CCCceEEEEEEcCCCCCC-CccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccc--c
Q 044750 175 FGDKVRHLGLNFEGGAPL-PMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIRE--I 251 (658)
Q Consensus 175 ~~~~~~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~--l 251 (658)
....++.+.+.++.+... |..+.++++|++|++++|... .++.. .+++|++|++ ++ +.+.. +
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~----~lp~~--~l~~L~~L~L------~~---N~l~~~~~ 107 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV----KISCH--PTVNLKHLDL------SF---NAFDALPI 107 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC----EEECC--CCCCCSEEEC------CS---SCCSSCCC
T ss_pred ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee----ecCcc--ccCCccEEec------cC---Cccccccc
Confidence 356899999999998875 567899999999999999753 23443 8999999999 44 55554 6
Q ss_pred cccccCCCccceeecCCccccccchhhhcCCCC--cEeecCCCCC--CCCCCccccccc-CCceeecCCcccCccCcC-c
Q 044750 252 PENIGKLIHLKYLNLSELCIERLPETLCELYNL--RKLDIRRCPN--LRELPAGIGKLM-NMRSLLNGQTYSLKYMPI-G 325 (658)
Q Consensus 252 p~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L--~~L~L~~~~~--~~~lp~~i~~L~-~L~~L~l~~~~~~~~~p~-~ 325 (658)
|..++++++|++|++++|.++. ..++.+++| ++|++++|.. ....|..+..+. +...+++++|.....++. .
T Consensus 108 p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~ 185 (520)
T 2z7x_B 108 CKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS 185 (520)
T ss_dssp CGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCC
T ss_pred hhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhh
Confidence 7899999999999999999886 467888888 9999999986 466677666644 223345555544333332 2
Q ss_pred CCCCCCCCccCceeeccCCC----CCcccccccccc------------------------CcccCCceecCccCCCChhh
Q 044750 326 ISKLTSLRTLEKFVVGGGVD----GGSTCRLESLKN------------------------LQLLRKCGIEGLSNVSHLDE 377 (658)
Q Consensus 326 i~~l~~L~~L~~~~~~~~~~----~~~~~~~~~l~~------------------------L~~L~~l~i~~~~~~~~~~~ 377 (658)
+..+++|+.|++........ ......+..+++ ..+|+.+.+.+..- ..
T Consensus 186 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l----~~ 261 (520)
T 2z7x_B 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL----QG 261 (520)
T ss_dssp CTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEE----ES
T ss_pred hhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccc----cC
Confidence 44455555554322110000 000000111111 11233333322110 00
Q ss_pred Hhhccc-----CcccCCCceEEEecCccCCCCcccccCchhHHHHhh------------------hcCCCCCCceEEEee
Q 044750 378 AERIGL-----HNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLE------------------ALQPHLNVEELQICF 434 (658)
Q Consensus 378 ~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~------------------~l~~~~~L~~L~l~~ 434 (658)
..+..+ ..+++|+.+++..+.. ... .......+. .....++|+.|++++
T Consensus 262 ~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p-------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 262 QLDFRDFDYSGTSLKALSIHQVVSDVF-GFP-------QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333 (520)
T ss_dssp CCCCCCCCCCSCCCCEEEEEEEEECCC-CSC-------THHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred ccccchhhcccccCceeEeccccccce-ecc-------hhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeEC
Confidence 111122 4555566666655542 000 000000000 002345666666666
Q ss_pred eCCCC-CChhhhcccccceEEeeCCCCCC--CCC-CCCCcc-ccceeccccccceEeCccccCCCCCCCCCCCCCCCCC-
Q 044750 435 YGGDI-FPKWLTSLTYLRELNLWFCFNCE--HLP-PLGKLP-LEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSS- 508 (658)
Q Consensus 435 ~~~~~-~p~~~~~l~~L~~L~l~~~~~~~--~l~-~~~~lp-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 508 (658)
+.... .|.++..+++|++|++++|.... .+| .++.++ |+.|+++++.-.. .+|.
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~--------------------~l~~~ 393 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY--------------------DEKKG 393 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC--------------------CGGGC
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc--------------------ccccc
Confidence 55443 45555666666666666665432 111 134555 6666665543211 0222
Q ss_pred cccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCC
Q 044750 509 SVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILE 588 (658)
Q Consensus 509 ~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~ 588 (658)
.+..+++|++|++++|. +.. ..+..+ .++|++|++++| .++.+|..+..+++|++|++++|.. +.+|.
T Consensus 394 ~~~~l~~L~~L~Ls~N~-l~~-----~~~~~l--~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l-~~l~~-- 461 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNI-LTD-----TIFRCL--PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQL-KSVPD-- 461 (520)
T ss_dssp SCCCCTTCCEEECCSSC-CCG-----GGGGSC--CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCC-CCCCT--
T ss_pred hhccCccCCEEECcCCC-CCc-----chhhhh--cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcC-CccCH--
Confidence 24578999999999983 322 112222 279999999999 5668999888999999999999964 46773
Q ss_pred ccccCCCCCCCeeeccCCCC
Q 044750 589 DRKTTDIPRLSSLEIGYCPK 608 (658)
Q Consensus 589 ~~~~~~~~~L~~L~l~~c~~ 608 (658)
..+..+++|++|++++|+.
T Consensus 462 -~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 462 -GIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp -TTTTTCTTCCEEECCSSCB
T ss_pred -HHhccCCcccEEECcCCCC
Confidence 2478899999999999974
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.8e-24 Score=229.23 Aligned_cols=346 Identities=20% Similarity=0.231 Sum_probs=258.0
Q ss_pred CceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccccccc
Q 044750 177 DKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIG 256 (658)
Q Consensus 177 ~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~ 256 (658)
..++.+.+.++.+..++ .+..+++|+.|++++|... ..+. +.++++|++|++ ++ +.+..++. +.
T Consensus 46 ~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~----~~~~-~~~l~~L~~L~l------~~---n~l~~~~~-~~ 109 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLT----DITP-LKNLTKLVDILM------NN---NQIADITP-LA 109 (466)
T ss_dssp HTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCC----CCGG-GTTCTTCCEEEC------CS---SCCCCCGG-GT
T ss_pred ccccEEecCCCCCccCc-chhhhcCCCEEECCCCccC----Cchh-hhccccCCEEEC------CC---CccccChh-hc
Confidence 46888999888887665 4778999999999999753 2233 889999999999 44 56666666 89
Q ss_pred CCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccC
Q 044750 257 KLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLE 336 (658)
Q Consensus 257 ~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 336 (658)
++++|++|++++|.++.+|. ++++++|++|++++|. +..+|. +..+++|++|+++++ ...++. ++.+++|+.|+
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~~L~ 183 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQ--VTDLKP-LANLTTLERLD 183 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEES--CCCCGG-GTTCTTCCEEE
T ss_pred CCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCCc--ccCchh-hccCCCCCEEE
Confidence 99999999999999998875 8999999999999997 666664 899999999999643 333333 78888888886
Q ss_pred ceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHH
Q 044750 337 KFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQ 416 (658)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 416 (658)
+..... ..+..+..+++|+.+.+.+..-... . .+..+++|+.|+++++....
T Consensus 184 l~~n~l-------~~~~~l~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~l~~n~l~~--------------- 235 (466)
T 1o6v_A 184 ISSNKV-------SDISVLAKLTNLESLIATNNQISDI-T-----PLGILTNLDELSLNGNQLKD--------------- 235 (466)
T ss_dssp CCSSCC-------CCCGGGGGCTTCSEEECCSSCCCCC-G-----GGGGCTTCCEEECCSSCCCC---------------
T ss_pred CcCCcC-------CCChhhccCCCCCEEEecCCccccc-c-----cccccCCCCEEECCCCCccc---------------
Confidence 433221 1223355666677766665322111 1 15668899999999887322
Q ss_pred HhhhcCCCCCCceEEEeeeCCCCCChhhhcccccceEEeeCCCCCCCCCCCCCcc-ccceeccccccceEeCccccCCCC
Q 044750 417 LLEALQPHLNVEELQICFYGGDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLP-LEKLQLYILKSVKRVGNEFLGIEE 495 (658)
Q Consensus 417 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lp-L~~L~l~~~~~l~~~~~~~~~~~~ 495 (658)
...+...++|+.|.+.++....++. +..+++|++|++++|.... ++.+..++ |+.|++.++.-- +.
T Consensus 236 -~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l~--------~~-- 302 (466)
T 1o6v_A 236 -IGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQLE--------DI-- 302 (466)
T ss_dssp -CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCS--------CC--
T ss_pred -chhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCc-cccccCCCccCeEEcCCCccc--------Cc--
Confidence 1234567899999999988777655 7889999999999996544 44477788 999999876421 11
Q ss_pred CCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEE
Q 044750 496 SSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRI 575 (658)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l 575 (658)
+ .+..+++|+.|++++| .+.+.. .+..+++|++|++++| .+..+ ..+..+++|+.|++
T Consensus 303 -----------~-~~~~l~~L~~L~L~~n-~l~~~~-------~~~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 303 -----------S-PISNLKNLTYLTLYFN-NISDIS-------PVSSLTKLQRLFFYNN-KVSDV-SSLANLTNINWLSA 360 (466)
T ss_dssp -----------G-GGGGCTTCSEEECCSS-CCSCCG-------GGGGCTTCCEEECCSS-CCCCC-GGGTTCTTCCEEEC
T ss_pred -----------h-hhcCCCCCCEEECcCC-cCCCch-------hhccCccCCEeECCCC-ccCCc-hhhccCCCCCEEeC
Confidence 1 1458999999999998 444322 2568999999999999 45555 46788999999999
Q ss_pred ccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCC
Q 044750 576 YFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPN 614 (658)
Q Consensus 576 ~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~ 614 (658)
++|......| +..+++|+.|++++|+ +..+|.
T Consensus 361 ~~n~l~~~~~------~~~l~~L~~L~l~~n~-~~~~p~ 392 (466)
T 1o6v_A 361 GHNQISDLTP------LANLTRITQLGLNDQA-WTNAPV 392 (466)
T ss_dssp CSSCCCBCGG------GTTCTTCCEEECCCEE-EECCCB
T ss_pred CCCccCccch------hhcCCCCCEEeccCCc-ccCCch
Confidence 9998655433 6789999999999996 444443
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.9e-24 Score=220.18 Aligned_cols=304 Identities=17% Similarity=0.198 Sum_probs=174.7
Q ss_pred cCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccch
Q 044750 197 YGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPE 276 (658)
Q Consensus 197 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~ 276 (658)
..+++|+.|.+.++... .+ ..+..+++|++|++ ++ +.+..++. +..+++|++|++++|.++.+|
T Consensus 41 ~~l~~L~~L~l~~~~i~----~~-~~~~~~~~L~~L~l------~~---n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~- 104 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA----SI-QGIEYLTNLEYLNL------NG---NQITDISP-LSNLVKLTNLYIGTNKITDIS- 104 (347)
T ss_dssp HHHTTCSEEECCSSCCC----CC-TTGGGCTTCCEEEC------CS---SCCCCCGG-GTTCTTCCEEECCSSCCCCCG-
T ss_pred hhcccccEEEEeCCccc----cc-hhhhhcCCccEEEc------cC---Cccccchh-hhcCCcCCEEEccCCcccCch-
Confidence 45666777777766532 12 23566777777777 33 44555555 666777777777777776665
Q ss_pred hhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccCceeeccCCCCCccccccccc
Q 044750 277 TLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLEKFVVGGGVDGGSTCRLESLK 356 (658)
Q Consensus 277 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~ 356 (658)
.++++++|++|++++|. +..+|. +..+++|++|++++|.....++. +..+++|++|++...... .+.
T Consensus 105 ~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-------~~~--- 171 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-------DVT--- 171 (347)
T ss_dssp GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-------CCG---
T ss_pred HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC-------Cch---
Confidence 46677777777777766 555555 66777777777777654444332 555555555532111000 000
Q ss_pred cCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHHHhhhcCCCCCCceEEEeeeC
Q 044750 357 NLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLNVEELQICFYG 436 (658)
Q Consensus 357 ~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 436 (658)
.+..+++|+.|+++++.+... ..+...++++.+.+.++.
T Consensus 172 -------------------------~~~~l~~L~~L~l~~n~l~~~----------------~~~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 172 -------------------------PIANLTDLYSLSLNYNQIEDI----------------SPLASLTSLHYFTAYVNQ 210 (347)
T ss_dssp -------------------------GGGGCTTCSEEECTTSCCCCC----------------GGGGGCTTCCEEECCSSC
T ss_pred -------------------------hhccCCCCCEEEccCCccccc----------------ccccCCCccceeecccCC
Confidence 022334444444444331000 001223344444444444
Q ss_pred CCCCChhhhcccccceEEeeCCCCCCCCCCCCCccccceeccccccceEeCccccCCCCCCCCCCCCCCCCCcccCCCCc
Q 044750 437 GDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLPLEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKL 516 (658)
Q Consensus 437 ~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lpL~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 516 (658)
...++. +..+++|++|++++|.... ++ . +..+++|
T Consensus 211 l~~~~~-~~~~~~L~~L~l~~n~l~~-~~------------------------------------------~-~~~l~~L 245 (347)
T 4fmz_A 211 ITDITP-VANMTRLNSLKIGNNKITD-LS------------------------------------------P-LANLSQL 245 (347)
T ss_dssp CCCCGG-GGGCTTCCEEECCSSCCCC-CG------------------------------------------G-GTTCTTC
T ss_pred CCCCch-hhcCCcCCEEEccCCccCC-Cc------------------------------------------c-hhcCCCC
Confidence 333322 4444555555555553211 11 0 3467788
Q ss_pred ceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCccccCCCC
Q 044750 517 KSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILEDRKTTDIP 596 (658)
Q Consensus 517 ~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~ 596 (658)
++|+++++ .++.+ ..+..+++|++|++++| .+..++ .+..+++|++|++++|......| ..+..++
T Consensus 246 ~~L~l~~n-~l~~~-------~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~ 311 (347)
T 4fmz_A 246 TWLEIGTN-QISDI-------NAVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDM----EVIGGLT 311 (347)
T ss_dssp CEEECCSS-CCCCC-------GGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGH----HHHHTCT
T ss_pred CEEECCCC-ccCCC-------hhHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcCh----hHhhccc
Confidence 88888877 33332 24567888888888887 455553 46778888888888887655444 3567788
Q ss_pred CCCeeeccCCCCccccCCCCCCCCCccEEEEecCh
Q 044750 597 RLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 597 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 631 (658)
+|++|++++|+ ++.++. +..+++|+.|++++|+
T Consensus 312 ~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 312 NLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp TCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred cCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 88888888886 455444 6678888888888886
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=4.1e-24 Score=227.65 Aligned_cols=141 Identities=23% Similarity=0.245 Sum_probs=91.5
Q ss_pred EEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccc-cccccCCCc
Q 044750 182 LGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREI-PENIGKLIH 260 (658)
Q Consensus 182 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~l-p~~~~~l~~ 260 (658)
+.........+|..+. ++++.|++++|.+. ...+..|.++++|++|+| ++ +.+..+ |..+.++++
T Consensus 16 v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L------~~---n~i~~~~~~~~~~l~~ 81 (477)
T 2id5_A 16 VLCHRKRFVAVPEGIP--TETRLLDLGKNRIK---TLNQDEFASFPHLEELEL------NE---NIVSAVEPGAFNNLFN 81 (477)
T ss_dssp EECCSCCCSSCCSCCC--TTCSEEECCSSCCC---EECTTTTTTCTTCCEEEC------TT---SCCCEECTTTTTTCTT
T ss_pred EEeCCCCcCcCCCCCC--CCCcEEECCCCccc---eECHhHccCCCCCCEEEC------CC---CccCEeChhhhhCCcc
Confidence 3444444555555442 57777888777653 333556777777888877 33 444444 566777777
Q ss_pred cceeecCCccccccchh-hhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccC
Q 044750 261 LKYLNLSELCIERLPET-LCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLE 336 (658)
Q Consensus 261 L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 336 (658)
|++|+|++|.++.+|.. ++++++|++|++++|......|..+..+++|++|++++|......|..+..+++|+.|+
T Consensus 82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 88888887777777653 57777788888877774444566677777777777777754444445566666666654
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=2.5e-24 Score=228.10 Aligned_cols=110 Identities=17% Similarity=0.098 Sum_probs=89.7
Q ss_pred CCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCccc
Q 044750 512 AFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILEDRK 591 (658)
Q Consensus 512 ~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~ 591 (658)
.+++|++|+++++ .+.. ..+..+..+++|++|++++|......|..+..+++|++|++++|......| ..
T Consensus 273 ~~~~L~~L~l~~n-~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~ 342 (455)
T 3v47_A 273 EASGVKTCDLSKS-KIFA-----LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS----RM 342 (455)
T ss_dssp TTSCCCEEECCSS-CCCE-----ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG----GG
T ss_pred cccCceEEEecCc-cccc-----cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh----hH
Confidence 3578999999998 3332 235667889999999999996555557788999999999999997654444 46
Q ss_pred cCCCCCCCeeeccCCCCccccCCCCCCCCCccEEEEecCh
Q 044750 592 TTDIPRLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 592 ~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 631 (658)
+..+++|++|++++|......|..+..+++|+.|++++|.
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred hcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 7889999999999997554557889999999999999985
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.5e-23 Score=227.87 Aligned_cols=368 Identities=15% Similarity=0.074 Sum_probs=245.1
Q ss_pred CCCceEEEEEEcCCCCCCC-ccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccc
Q 044750 175 FGDKVRHLGLNFEGGAPLP-MSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPE 253 (658)
Q Consensus 175 ~~~~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~ 253 (658)
.+..++.++++++.+..++ ..+.++++|+.|++++|... ...+..|.++++|++|++ ++ +.+..+|.
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L------s~---N~l~~lp~ 117 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR---SLDFHVFLFNQDLEYLDV------SH---NRLQNISC 117 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC---EECTTTTTTCTTCCEEEC------TT---SCCCEECS
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC---cCCHHHhCCCCCCCEEEC------CC---CcCCccCc
Confidence 4578999999999998766 47889999999999999864 455678999999999999 55 67788987
Q ss_pred cccCCCccceeecCCccccccc--hhhhcCCCCcEeecCCCCCCCCCCcccccccCC--ceeecCCccc--CccCcCcCC
Q 044750 254 NIGKLIHLKYLNLSELCIERLP--ETLCELYNLRKLDIRRCPNLRELPAGIGKLMNM--RSLLNGQTYS--LKYMPIGIS 327 (658)
Q Consensus 254 ~~~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L--~~L~l~~~~~--~~~~p~~i~ 327 (658)
. .+++|++|++++|.++.+| ..++++++|++|++++|. +.. ..+..+++| +.|++++|.. ....|..+.
T Consensus 118 ~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~ 192 (562)
T 3a79_B 118 C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQ 192 (562)
T ss_dssp C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEE
T ss_pred c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCccccc
Confidence 7 8999999999999999754 789999999999999987 433 345666666 9999999865 444454444
Q ss_pred CCC--------------------------CCCccCceeeccCC--CCCccccccccccC---------------------
Q 044750 328 KLT--------------------------SLRTLEKFVVGGGV--DGGSTCRLESLKNL--------------------- 358 (658)
Q Consensus 328 ~l~--------------------------~L~~L~~~~~~~~~--~~~~~~~~~~l~~L--------------------- 358 (658)
.+. +|+.+++....... .......+..+.++
T Consensus 193 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~ 272 (562)
T 3a79_B 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272 (562)
T ss_dssp ECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH
T ss_pred ccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh
Confidence 332 33333211100000 00000000000000
Q ss_pred ---cccCCceecCccCC---C------------------------ChhhHhhcccCcccCCCceEEEecCccCCCCcccc
Q 044750 359 ---QLLRKCGIEGLSNV---S------------------------HLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGR 408 (658)
Q Consensus 359 ---~~L~~l~i~~~~~~---~------------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 408 (658)
.+|+.+.+.+..-. . .++......+....+|+.|+++.+.+....
T Consensus 273 ~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~----- 347 (562)
T 3a79_B 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV----- 347 (562)
T ss_dssp HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC-----
T ss_pred hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc-----
Confidence 02222222221100 0 000000000111235666777666532111
Q ss_pred cCchhHHHHhhhcCCCCCCceEEEeeeCCCC-CChhhhcccccceEEeeCCCCCC--CCC-CCCCcc-ccceeccccccc
Q 044750 409 RKNEKDKQLLEALQPHLNVEELQICFYGGDI-FPKWLTSLTYLRELNLWFCFNCE--HLP-PLGKLP-LEKLQLYILKSV 483 (658)
Q Consensus 409 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~--~l~-~~~~lp-L~~L~l~~~~~l 483 (658)
.....++++.|.+.++.... .|.++..+++|++|++++|.... .++ .++.++ |+.|+++++.-.
T Consensus 348 -----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 348 -----------CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp -----------CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred -----------CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 01356889999999887655 67888899999999999996543 112 367788 999999876532
Q ss_pred eEeCccccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcC-cccceeeeeCCCCCCCCCc
Q 044750 484 KRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIM-PRLSSLWIRGCPKLKALPD 562 (658)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~-~~L~~L~L~~c~~l~~lp~ 562 (658)
...+. ..+..+++|++|+++++ .++. ..+. .+ ++|++|++++| .++.+|.
T Consensus 417 ~~~~~-------------------~~~~~l~~L~~L~l~~n-~l~~-----~~~~---~l~~~L~~L~L~~N-~l~~ip~ 467 (562)
T 3a79_B 417 SHAYD-------------------RTCAWAESILVLNLSSN-MLTG-----SVFR---CLPPKVKVLDLHNN-RIMSIPK 467 (562)
T ss_dssp SCCSS-------------------CCCCCCTTCCEEECCSS-CCCG-----GGGS---SCCTTCSEEECCSS-CCCCCCT
T ss_pred CccCh-------------------hhhcCcccCCEEECCCC-CCCc-----chhh---hhcCcCCEEECCCC-cCcccCh
Confidence 11111 12457899999999998 3332 1122 33 79999999998 6778999
Q ss_pred cccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCC
Q 044750 563 YLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPK 608 (658)
Q Consensus 563 ~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~ 608 (658)
.+..+++|++|++++|... .+|. ..+..+++|+.|++++|+.
T Consensus 468 ~~~~l~~L~~L~L~~N~l~-~l~~---~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 468 DVTHLQALQELNVASNQLK-SVPD---GVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp TTTSSCCCSEEECCSSCCC-CCCT---TSTTTCTTCCCEECCSCCB
T ss_pred hhcCCCCCCEEECCCCCCC-CCCH---HHHhcCCCCCEEEecCCCc
Confidence 8889999999999999754 6773 2378899999999999974
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.2e-24 Score=237.79 Aligned_cols=304 Identities=17% Similarity=0.137 Sum_probs=174.6
Q ss_pred CCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc-ccccCCCccceeecCCccccccch
Q 044750 198 GLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP-ENIGKLIHLKYLNLSELCIERLPE 276 (658)
Q Consensus 198 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~i~~lp~ 276 (658)
.+++++.+.+.++... ..++..|..+++|++|++ ++ +.+..++ ..++.+++|++|+|++|.++.+|+
T Consensus 49 ~l~~l~~l~l~~~~l~---~lp~~~~~~l~~L~~L~L------~~---n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 116 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNL------ND---LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 116 (597)
T ss_dssp GGCCCSEEEESSCEES---EECTHHHHHCCCCSEEEC------TT---SCCCEECTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCCceEEEeeCCCCC---CcCHHHHccCCCCcEEEC------CC---CCCCCCChHHhcCCCCCCEEECCCCcCCCCCH
Confidence 4678888888887643 344456788888888888 44 4555555 478888888888888888886665
Q ss_pred -hhhcCCCCcEeecCCCCCCCCCCcc-cccccCCceeecCCcccCccCcCcCCCCCCCCccCceeeccCCCCCccccccc
Q 044750 277 -TLCELYNLRKLDIRRCPNLRELPAG-IGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLEKFVVGGGVDGGSTCRLES 354 (658)
Q Consensus 277 -~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~ 354 (658)
.++++++|++|+|++|. +..+|.. ++.+++|++|++++|......|..++.+++|++|++.. +.. .. . .
T Consensus 117 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~--N~l-~~--~---~ 187 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS--NRL-TH--V---D 187 (597)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT--SCC-SB--C---C
T ss_pred HHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC--CCC-CC--c---C
Confidence 46888888888888887 6677766 47888888888888865555555678888888875321 111 00 0 0
Q ss_pred cccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHHHhhhcCCCCCCceEEEee
Q 044750 355 LKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLNVEELQICF 434 (658)
Q Consensus 355 l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 434 (658)
+ ..+++|+.|+++++.+ ..+..+++++.|.+.+
T Consensus 188 ~----------------------------~~l~~L~~L~l~~n~l-------------------~~l~~~~~L~~L~ls~ 220 (597)
T 3oja_B 188 L----------------------------SLIPSLFHANVSYNLL-------------------STLAIPIAVEELDASH 220 (597)
T ss_dssp G----------------------------GGCTTCSEEECCSSCC-------------------SEEECCTTCSEEECCS
T ss_pred h----------------------------hhhhhhhhhhcccCcc-------------------ccccCCchhheeeccC
Confidence 1 1223344444443330 0112233444454444
Q ss_pred eCCCCCChhhhcccccceEEeeCCCCCCCCCCCCCcc-ccceeccccccceEeCccccCCCCCCCCCCCCCCCCCcccCC
Q 044750 435 YGGDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLP-LEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVTAF 513 (658)
Q Consensus 435 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lp-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (658)
+....+|..+ .++|+.|++++|.... .+.++.+| |+.|+++++..-... |..+..+
T Consensus 221 n~l~~~~~~~--~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~--------------------~~~~~~l 277 (597)
T 3oja_B 221 NSINVVRGPV--NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIM--------------------YHPFVKM 277 (597)
T ss_dssp SCCCEEECSC--CSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEE--------------------SGGGTTC
T ss_pred Cccccccccc--CCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCC--------------------HHHhcCc
Confidence 4433333221 2456666666664322 23344444 444444443221111 1223456
Q ss_pred CCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCccccC
Q 044750 514 PKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILEDRKTT 593 (658)
Q Consensus 514 ~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~ 593 (658)
++|++|+|+++ .+..+ +..+..+|+|+.|+|++| .+..+|..+..+++|+.|+|++|.... + .+.
T Consensus 278 ~~L~~L~Ls~N-~l~~l------~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~~-~------~~~ 342 (597)
T 3oja_B 278 QRLERLYISNN-RLVAL------NLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVT-L------KLS 342 (597)
T ss_dssp SSCCEEECTTS-CCCEE------ECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCCC-C------CCC
T ss_pred cCCCEEECCCC-CCCCC------CcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCCCC-c------Chh
Confidence 66666666665 33322 223345666666666666 344566666666666666666665322 2 234
Q ss_pred CCCCCCeeeccCCC
Q 044750 594 DIPRLSSLEIGYCP 607 (658)
Q Consensus 594 ~~~~L~~L~l~~c~ 607 (658)
.+++|+.|++++|+
T Consensus 343 ~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 343 THHTLKNLTLSHND 356 (597)
T ss_dssp TTCCCSEEECCSSC
T ss_pred hcCCCCEEEeeCCC
Confidence 55666666666665
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.7e-23 Score=213.08 Aligned_cols=302 Identities=19% Similarity=0.203 Sum_probs=223.3
Q ss_pred CCceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccc
Q 044750 176 GDKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENI 255 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~ 255 (658)
.+.++++.+.++.+..++ .+..+++|+.|++++|... ..+. +..+++|++|++ ++ +.+..+| .+
T Consensus 43 l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~----~~~~-~~~l~~L~~L~L------~~---n~i~~~~-~~ 106 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQIT----DISP-LSNLVKLTNLYI------GT---NKITDIS-AL 106 (347)
T ss_dssp HTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCC----CCGG-GTTCTTCCEEEC------CS---SCCCCCG-GG
T ss_pred cccccEEEEeCCccccch-hhhhcCCccEEEccCCccc----cchh-hhcCCcCCEEEc------cC---CcccCch-HH
Confidence 567899999998887665 4788999999999999753 2233 899999999999 44 5566665 58
Q ss_pred cCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCcc
Q 044750 256 GKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTL 335 (658)
Q Consensus 256 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 335 (658)
..+++|++|++++|.++.+|. +..+++|++|++++|.....++. +..+++|++|++++|. +..++. +..+++|+.|
T Consensus 107 ~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L 182 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSL 182 (347)
T ss_dssp TTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEE
T ss_pred cCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEE
Confidence 999999999999999999886 89999999999999976666554 8999999999999995 444443 7778888887
Q ss_pred CceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHH
Q 044750 336 EKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDK 415 (658)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 415 (658)
++.. +... .+.. +..+++|+.++++++.+...
T Consensus 183 ~l~~---n~l~----~~~~----------------------------~~~l~~L~~L~l~~n~l~~~------------- 214 (347)
T 4fmz_A 183 SLNY---NQIE----DISP----------------------------LASLTSLHYFTAYVNQITDI------------- 214 (347)
T ss_dssp ECTT---SCCC----CCGG----------------------------GGGCTTCCEEECCSSCCCCC-------------
T ss_pred EccC---Cccc----cccc----------------------------ccCCCccceeecccCCCCCC-------------
Confidence 5321 1100 0001 23455666666665542110
Q ss_pred HHhhhcCCCCCCceEEEeeeCCCCCChhhhcccccceEEeeCCCCCCCCCCCCCccccceeccccccceEeCccccCCCC
Q 044750 416 QLLEALQPHLNVEELQICFYGGDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLPLEKLQLYILKSVKRVGNEFLGIEE 495 (658)
Q Consensus 416 ~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lpL~~L~l~~~~~l~~~~~~~~~~~~ 495 (658)
..+..+++|+.|.+.++....++. +..+++|++|++++|.... ++.
T Consensus 215 ---~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~----------------------------- 260 (347)
T 4fmz_A 215 ---TPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-INA----------------------------- 260 (347)
T ss_dssp ---GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-----------------------------
T ss_pred ---chhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-Chh-----------------------------
Confidence 013456789999999988877766 7889999999999995321 111
Q ss_pred CCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEE
Q 044750 496 SSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRI 575 (658)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l 575 (658)
+..+++|++|++++| .++++ ..+..+++|+.|++++|......|..+..+++|++|++
T Consensus 261 --------------~~~l~~L~~L~l~~n-~l~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 261 --------------VKDLTKLKMLNVGSN-QISDI-------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp --------------GTTCTTCCEEECCSS-CCCCC-------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred --------------HhcCCCcCEEEccCC-ccCCC-------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence 346788888888887 44443 23567899999999998655556677888999999999
Q ss_pred ccCCCCCCCcCCCccccCCCCCCCeeeccCCC
Q 044750 576 YFCDLLEELPILEDRKTTDIPRLSSLEIGYCP 607 (658)
Q Consensus 576 ~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~ 607 (658)
++|+.. .++ .+..+++|++|++++|+
T Consensus 319 ~~n~l~-~~~-----~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 319 SQNHIT-DIR-----PLASLSKMDSADFANQV 344 (347)
T ss_dssp CSSSCC-CCG-----GGGGCTTCSEESSSCC-
T ss_pred cCCccc-ccc-----Chhhhhccceeehhhhc
Confidence 999754 444 36778999999999986
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.3e-23 Score=220.65 Aligned_cols=297 Identities=18% Similarity=0.126 Sum_probs=181.9
Q ss_pred CccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCcccc
Q 044750 193 PMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIE 272 (658)
Q Consensus 193 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~ 272 (658)
+..+.++++|+.|++++|... . .+ .+..+++|++|++ ++ +.+..+| ++.+++|++|++++|.++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~---~-~~-~l~~l~~L~~L~L------s~---n~l~~~~--~~~l~~L~~L~Ls~N~l~ 98 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSIT---D-MT-GIEKLTGLTKLIC------TS---NNITTLD--LSQNTNLTYLACDSNKLT 98 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCC---C-CT-TGGGCTTCSEEEC------CS---SCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred ccChhHcCCCCEEEccCCCcc---c-Ch-hhcccCCCCEEEc------cC---CcCCeEc--cccCCCCCEEECcCCCCc
Confidence 456778999999999999754 2 23 5889999999999 44 5566665 889999999999999999
Q ss_pred ccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccCceeeccCCCCCccccc
Q 044750 273 RLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLEKFVVGGGVDGGSTCRL 352 (658)
Q Consensus 273 ~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~ 352 (658)
.+| ++++++|++|++++|. +..+| ++.+++|++|++++|. +..++ ++.+++|++|++... ...+..
T Consensus 99 ~~~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n--~~~~~~---- 164 (457)
T 3bz5_A 99 NLD--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLN--KKITKL---- 164 (457)
T ss_dssp CCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTC--SCCCCC----
T ss_pred eee--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCC--Cccccc----
Confidence 886 8899999999999997 66676 8899999999999994 44453 777888888753221 111111
Q ss_pred cccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHHHhhhcCCCCCCceEEE
Q 044750 353 ESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLNVEELQI 432 (658)
Q Consensus 353 ~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 432 (658)
.+..+++|+.+.+.... .... .+..+++|+.|+++++.
T Consensus 165 -~~~~l~~L~~L~ls~n~-l~~l------~l~~l~~L~~L~l~~N~---------------------------------- 202 (457)
T 3bz5_A 165 -DVTPQTQLTTLDCSFNK-ITEL------DVSQNKLLNRLNCDTNN---------------------------------- 202 (457)
T ss_dssp -CCTTCTTCCEEECCSSC-CCCC------CCTTCTTCCEEECCSSC----------------------------------
T ss_pred -ccccCCcCCEEECCCCc-ccee------ccccCCCCCEEECcCCc----------------------------------
Confidence 12333334443333211 0100 13344455555554443
Q ss_pred eeeCCCCCChhhhcccccceEEeeCCCCCCCCCCCCCcc-ccceeccccccceEeCccccCCCCCCCCCCCCCCCCCccc
Q 044750 433 CFYGGDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLP-LEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVT 511 (658)
Q Consensus 433 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lp-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (658)
...++ +..+++|+.|++++|...+ +| ++.++ |+.|.++++.- .+.. ..
T Consensus 203 ----l~~~~--l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l--------~~~~---------------~~ 251 (457)
T 3bz5_A 203 ----ITKLD--LNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPL--------TELD---------------VS 251 (457)
T ss_dssp ----CSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCC--------SCCC---------------CT
T ss_pred ----CCeec--cccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcC--------CCcC---------------HH
Confidence 33321 3344555555555554332 33 44444 55555444321 0000 11
Q ss_pred CCC----------CcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCcc--------ccCCCCcceE
Q 044750 512 AFP----------KLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDY--------LLQSTALQEL 573 (658)
Q Consensus 512 ~~~----------~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~--------~~~l~~L~~L 573 (658)
.|+ +|+.|++++|..+..+ + ...+++|+.|++++|+.++.+|.. +.++++|++|
T Consensus 252 ~l~~L~~L~l~~n~L~~L~l~~n~~~~~~------~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L 323 (457)
T 3bz5_A 252 TLSKLTTLHCIQTDLLEIDLTHNTQLIYF------Q--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYL 323 (457)
T ss_dssp TCTTCCEEECTTCCCSCCCCTTCTTCCEE------E--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred HCCCCCEEeccCCCCCEEECCCCccCCcc------c--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEE
Confidence 233 4555555555433322 1 346788888888888766655532 3455677777
Q ss_pred EEccCCCCCCCcCCCccccCCCCCCCeeeccCCC
Q 044750 574 RIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCP 607 (658)
Q Consensus 574 ~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~ 607 (658)
++++|.... + .+..|++|+.|++++|.
T Consensus 324 ~L~~N~l~~-l------~l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 324 YLNNTELTE-L------DVSHNTKLKSLSCVNAH 350 (457)
T ss_dssp ECTTCCCSC-C------CCTTCTTCSEEECCSSC
T ss_pred ECCCCcccc-c------ccccCCcCcEEECCCCC
Confidence 777765333 2 36778888888888875
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.4e-23 Score=217.26 Aligned_cols=305 Identities=15% Similarity=0.112 Sum_probs=221.9
Q ss_pred CCceEEEEEEcCCCCCCCcc-ccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc-c
Q 044750 176 GDKVRHLGLNFEGGAPLPMS-IYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP-E 253 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp-~ 253 (658)
...++.+.+.++.+..+|.. +..+++|+.|++.+|... ...+..|..+++|++|++ ++ +.+..+| .
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L------~~---n~l~~~~~~ 111 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYM------GF---NAIRYLPPH 111 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEEC------CS---SCCCCCCTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc---ccChhhccCCCCcCEEEC------CC---CCCCcCCHH
Confidence 36788999999988877765 578999999999999754 444568899999999999 44 5566664 5
Q ss_pred cccCCCccceeecCCccccccchh-hhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCC
Q 044750 254 NIGKLIHLKYLNLSELCIERLPET-LCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSL 332 (658)
Q Consensus 254 ~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 332 (658)
.++++++|++|++++|.++.+|.. ++++++|++|++++|......|..+..+++|++|++++|. +..++ ++.+++|
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~L 188 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSL 188 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCTTC
T ss_pred HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc--ccccccc
Confidence 589999999999999999999986 4899999999999998444445668999999999999994 44433 5667777
Q ss_pred CccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCch
Q 044750 333 RTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNE 412 (658)
Q Consensus 333 ~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 412 (658)
+.|++.. +. +..+. ...+|+.|+++++.+..
T Consensus 189 ~~L~l~~---n~-------l~~~~----------------------------~~~~L~~L~l~~n~l~~----------- 219 (390)
T 3o6n_A 189 FHANVSY---NL-------LSTLA----------------------------IPIAVEELDASHNSINV----------- 219 (390)
T ss_dssp SEEECCS---SC-------CSEEE----------------------------CCSSCSEEECCSSCCCE-----------
T ss_pred ceeeccc---cc-------ccccC----------------------------CCCcceEEECCCCeeee-----------
Confidence 7774321 11 11111 12244555555444110
Q ss_pred hHHHHhhhcCCCCCCceEEEeeeCCCCCChhhhcccccceEEeeCCCCCCCCCCCCCccccceeccccccceEeCccccC
Q 044750 413 KDKQLLEALQPHLNVEELQICFYGGDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLPLEKLQLYILKSVKRVGNEFLG 492 (658)
Q Consensus 413 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lpL~~L~l~~~~~l~~~~~~~~~ 492 (658)
+ .....++|+.|.+.++.... +.++..+++|++|++++|......
T Consensus 220 ----~--~~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~---------------------------- 264 (390)
T 3o6n_A 220 ----V--RGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIM---------------------------- 264 (390)
T ss_dssp ----E--ECCCCSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEE----------------------------
T ss_pred ----c--cccccccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcC----------------------------
Confidence 0 00123578888888777666 467889999999999999632111
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcce
Q 044750 493 IEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQE 572 (658)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~ 572 (658)
+..+..+++|++|+++++ .++.+ +.....+|+|++|++++| .+..+|..+..+++|++
T Consensus 265 --------------~~~~~~l~~L~~L~L~~n-~l~~~------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~ 322 (390)
T 3o6n_A 265 --------------YHPFVKMQRLERLYISNN-RLVAL------NLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLEN 322 (390)
T ss_dssp --------------SGGGTTCSSCCEEECCSS-CCCEE------ECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSE
T ss_pred --------------hhHccccccCCEEECCCC-cCccc------CcccCCCCCCCEEECCCC-cceecCccccccCcCCE
Confidence 112446888999999887 44443 334467899999999998 56678888888999999
Q ss_pred EEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCC
Q 044750 573 LRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPK 608 (658)
Q Consensus 573 L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~ 608 (658)
|++++|... .+| +..+++|+.|++++|+.
T Consensus 323 L~L~~N~i~-~~~------~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 323 LYLDHNSIV-TLK------LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp EECCSSCCC-CCC------CCTTCCCSEEECCSSCE
T ss_pred EECCCCccc-eeC------chhhccCCEEEcCCCCc
Confidence 999998743 333 56788999999999873
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=6e-23 Score=215.62 Aligned_cols=324 Identities=16% Similarity=0.164 Sum_probs=213.3
Q ss_pred CCceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccc
Q 044750 176 GDKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENI 255 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~ 255 (658)
...++.+++.++.+...| .+..+++|+.|++++|... . .+ +..+++|++|++ ++ +.+..+| +
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~---~-~~--~~~l~~L~~L~L------s~---N~l~~~~--~ 102 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNIT---T-LD--LSQNTNLTYLAC------DS---NKLTNLD--V 102 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCS---C-CC--CTTCTTCSEEEC------CS---SCCSCCC--C
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCC---e-Ec--cccCCCCCEEEC------cC---CCCceee--c
Confidence 467899999999888765 6889999999999999754 2 22 789999999999 44 5566665 8
Q ss_pred cCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCcc
Q 044750 256 GKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTL 335 (658)
Q Consensus 256 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 335 (658)
+++++|++|++++|.++.+| ++.+++|++|++++|. +..+| ++.+++|+.|++++|..+..+ .++.+++|+.|
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 89999999999999999886 8999999999999998 66664 889999999999999766666 47888999988
Q ss_pred CceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHH
Q 044750 336 EKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDK 415 (658)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 415 (658)
++.... . ...+ +..++.|+.+.+....- ... .+..+++|+.|+++++.+..
T Consensus 176 ~ls~n~--l-~~l~-----l~~l~~L~~L~l~~N~l-~~~------~l~~l~~L~~L~Ls~N~l~~-------------- 226 (457)
T 3bz5_A 176 DCSFNK--I-TELD-----VSQNKLLNRLNCDTNNI-TKL------DLNQNIQLTFLDCSSNKLTE-------------- 226 (457)
T ss_dssp ECCSSC--C-CCCC-----CTTCTTCCEEECCSSCC-SCC------CCTTCTTCSEEECCSSCCSC--------------
T ss_pred ECCCCc--c-ceec-----cccCCCCCEEECcCCcC-Cee------ccccCCCCCEEECcCCcccc--------------
Confidence 643322 1 1111 44455565555543211 111 25566777777776665211
Q ss_pred HHhhhcCCCCCCceEEEeeeCCCCCChhhhcccccceEEeeCCCCCCCCCCCCCccccceeccccccceEeCccccCCCC
Q 044750 416 QLLEALQPHLNVEELQICFYGGDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLPLEKLQLYILKSVKRVGNEFLGIEE 495 (658)
Q Consensus 416 ~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lpL~~L~l~~~~~l~~~~~~~~~~~~ 495 (658)
++ +...++|+.|.+.++....+| +..+++|+.|+++++. |+.+.+.++..+..
T Consensus 227 -ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~------------L~~L~l~~n~~~~~---------- 279 (457)
T 3bz5_A 227 -ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTD------------LLEIDLTHNTQLIY---------- 279 (457)
T ss_dssp -CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCC------------CSCCCCTTCTTCCE----------
T ss_pred -cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCC------------CCEEECCCCccCCc----------
Confidence 00 222334444444444333322 2233344444433321 22333333332211
Q ss_pred CCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccc--cccccCcCcccceeeeeCCCCCCCCCccccCCCCcceE
Q 044750 496 SSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRIT--RKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQEL 573 (658)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~--~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L 573 (658)
+| ...+++|+.|++++|..++.+..... ..-.+..+++|+.|++++| .++.++ +.++++|+.|
T Consensus 280 ----------~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L 344 (457)
T 3bz5_A 280 ----------FQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSL 344 (457)
T ss_dssp ----------EE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEE
T ss_pred ----------cc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEE
Confidence 11 34789999999999976665443111 1113557789999999988 455564 7889999999
Q ss_pred EEccCCCCCCCcCCCccccCCCCCCCeeeccCCC
Q 044750 574 RIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCP 607 (658)
Q Consensus 574 ~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~ 607 (658)
++++|... .+ ++|..|.+.+|.
T Consensus 345 ~l~~N~l~-~l-----------~~L~~L~l~~n~ 366 (457)
T 3bz5_A 345 SCVNAHIQ-DF-----------SSVGKIPALNNN 366 (457)
T ss_dssp ECCSSCCC-BC-----------TTGGGSSGGGTS
T ss_pred ECCCCCCC-Cc-----------cccccccccCCc
Confidence 99998643 23 456666666653
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.6e-23 Score=227.11 Aligned_cols=303 Identities=18% Similarity=0.166 Sum_probs=219.6
Q ss_pred CceEEEEEEcCCCCCCCcc-ccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccc-c
Q 044750 177 DKVRHLGLNFEGGAPLPMS-IYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPE-N 254 (658)
Q Consensus 177 ~~~~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~-~ 254 (658)
..++.+.+.++.+..+|.. +..+++|+.|++++|.+. ...+..|..+++|++|+| ++ +.+..+|. .
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L------~~---n~l~~~~~~~ 118 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYM------GF---NAIRYLPPHV 118 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEEC------CS---SCCCCCCTTT
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC---CCChHHhcCCCCCCEEEC------CC---CcCCCCCHHH
Confidence 4677888888877776665 578999999999999864 455568999999999999 44 55666654 5
Q ss_pred ccCCCccceeecCCccccccchh-hhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCC
Q 044750 255 IGKLIHLKYLNLSELCIERLPET-LCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLR 333 (658)
Q Consensus 255 ~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 333 (658)
++++++|++|+|++|.++.+|.. ++++++|++|++++|......|..++.+++|++|++++|. +..++ ++.+++|+
T Consensus 119 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~ 195 (597)
T 3oja_B 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLF 195 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCS
T ss_pred HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhh
Confidence 78999999999999999999876 5899999999999998555556679999999999999994 44443 55677777
Q ss_pred ccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchh
Q 044750 334 TLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEK 413 (658)
Q Consensus 334 ~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 413 (658)
.|++. .+. +..+. ...+|+.|+++++.+..
T Consensus 196 ~L~l~---~n~-------l~~l~----------------------------~~~~L~~L~ls~n~l~~------------ 225 (597)
T 3oja_B 196 HANVS---YNL-------LSTLA----------------------------IPIAVEELDASHNSINV------------ 225 (597)
T ss_dssp EEECC---SSC-------CSEEE----------------------------CCTTCSEEECCSSCCCE------------
T ss_pred hhhcc---cCc-------ccccc----------------------------CCchhheeeccCCcccc------------
Confidence 77422 111 11111 12234555554444110
Q ss_pred HHHHhhhcCCCCCCceEEEeeeCCCCCChhhhcccccceEEeeCCCCCCCCC-CCCCcc-ccceeccccccceEeCcccc
Q 044750 414 DKQLLEALQPHLNVEELQICFYGGDIFPKWLTSLTYLRELNLWFCFNCEHLP-PLGKLP-LEKLQLYILKSVKRVGNEFL 491 (658)
Q Consensus 414 ~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~-~~~~lp-L~~L~l~~~~~l~~~~~~~~ 491 (658)
+. ...+++|+.|.+.++.... +.++..+++|+.|++++|......| .++.++ |+.|.++++.--. +
T Consensus 226 ---~~--~~~~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l----- 293 (597)
T 3oja_B 226 ---VR--GPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L----- 293 (597)
T ss_dssp ---EE--CSCCSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-E-----
T ss_pred ---cc--cccCCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-C-----
Confidence 00 0113567788887776665 5778889999999999997655433 467788 9999988764322 1
Q ss_pred CCCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcc
Q 044750 492 GIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQ 571 (658)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~ 571 (658)
+.....+++|+.|+|++| .+..+ +..+..+++|+.|++++|. +..+| +..+++|+
T Consensus 294 ---------------~~~~~~l~~L~~L~Ls~N-~l~~i------~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~ 348 (597)
T 3oja_B 294 ---------------NLYGQPIPTLKVLDLSHN-HLLHV------ERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLK 348 (597)
T ss_dssp ---------------ECSSSCCTTCCEEECCSS-CCCCC------GGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCS
T ss_pred ---------------CcccccCCCCcEEECCCC-CCCcc------CcccccCCCCCEEECCCCC-CCCcC--hhhcCCCC
Confidence 122347899999999998 44432 4456789999999999985 45554 66789999
Q ss_pred eEEEccCCCC
Q 044750 572 ELRIYFCDLL 581 (658)
Q Consensus 572 ~L~l~~c~~l 581 (658)
.|+|++|+..
T Consensus 349 ~L~l~~N~~~ 358 (597)
T 3oja_B 349 NLTLSHNDWD 358 (597)
T ss_dssp EEECCSSCEE
T ss_pred EEEeeCCCCC
Confidence 9999999854
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.2e-22 Score=213.29 Aligned_cols=369 Identities=18% Similarity=0.120 Sum_probs=191.8
Q ss_pred CCceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcc-------------cEEEEccccCCCC
Q 044750 176 GDKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACL-------------RALVIRQLSSFSH 242 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L-------------r~L~L~~~~~l~~ 242 (658)
...++.+.++++.+..+|..+.++++|+.|++++|... +..|..+..+..| +.|++ ++
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~---~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l------~~ 80 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWE---RNAPPGNGEQREMAVSRLRDCLDRQAHELEL------NN 80 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHH---HTSCTTSCCCHHHHHHHHHHHHHHTCSEEEC------TT
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCccc---ccCCcccccchhcchhhhhhhhccCCCEEEe------cC
Confidence 45678888888888888989999999999999988642 3456667777765 78888 43
Q ss_pred CCccccccccccccCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccC
Q 044750 243 PSPNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYM 322 (658)
Q Consensus 243 ~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~ 322 (658)
+.+..+|.. .++|++|++++|.++.+|.. +.+|++|++++|. +..+|.. .++|++|++++|. +..+
T Consensus 81 ---~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~-l~~l 146 (454)
T 1jl5_A 81 ---LGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQ-LEKL 146 (454)
T ss_dssp ---SCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSC-CSSC
T ss_pred ---CccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCC-CCCC
Confidence 455666652 36788888888888887753 4778888888876 5555542 1578888888884 4457
Q ss_pred cCcCCCCCCCCccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCC
Q 044750 323 PIGISKLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDG 402 (658)
Q Consensus 323 p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 402 (658)
| .++.+++|++|++... .. ...+... .+|+.+.+.+..- ... ..+..+++|+.|+++++.+...
T Consensus 147 p-~~~~l~~L~~L~l~~N--~l-~~lp~~~------~~L~~L~L~~n~l-~~l-----~~~~~l~~L~~L~l~~N~l~~l 210 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNN--SL-KKLPDLP------PSLEFIAAGNNQL-EEL-----PELQNLPFLTAIYADNNSLKKL 210 (454)
T ss_dssp C-CCTTCTTCCEEECCSS--CC-SCCCCCC------TTCCEEECCSSCC-SSC-----CCCTTCTTCCEEECCSSCCSSC
T ss_pred c-ccCCCCCCCEEECCCC--cC-cccCCCc------ccccEEECcCCcC-CcC-----ccccCCCCCCEEECCCCcCCcC
Confidence 7 4777888887754322 11 1112111 2344444433211 111 1366777888888877662210
Q ss_pred CCcccccCchhHHHHhhhcCCCCCCceEEEeeeCCCCCChhhhcccccceEEeeCCCCCCCCCCCCCcc-ccceeccccc
Q 044750 403 EGEEGRRKNEKDKQLLEALQPHLNVEELQICFYGGDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLP-LEKLQLYILK 481 (658)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lp-L~~L~l~~~~ 481 (658)
. ..+++++.|.+.++....+|. +..+++|++|++++|... .+|. ..+ |+.|++.++.
T Consensus 211 ~------------------~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~-~l~~--~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 211 P------------------DLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLK-TLPD--LPPSLEALNVRDNY 268 (454)
T ss_dssp C------------------CCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCS-SCCS--CCTTCCEEECCSSC
T ss_pred C------------------CCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCC-cccc--cccccCEEECCCCc
Confidence 0 012467777777776666664 667777777777777543 2332 124 6666666543
Q ss_pred cceEeCccccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcC-cccceeeeeCCCCCCCC
Q 044750 482 SVKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIM-PRLSSLWIRGCPKLKAL 560 (658)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~-~~L~~L~L~~c~~l~~l 560 (658)
--. ++..................++ ...++|++|+++++ .++. +..+ ++|++|++++| .+..+
T Consensus 269 l~~-l~~~~~~L~~L~ls~N~l~~l~---~~~~~L~~L~l~~N-~l~~----------i~~~~~~L~~L~Ls~N-~l~~l 332 (454)
T 1jl5_A 269 LTD-LPELPQSLTFLDVSENIFSGLS---ELPPNLYYLNASSN-EIRS----------LCDLPPSLEELNVSNN-KLIEL 332 (454)
T ss_dssp CSC-CCCCCTTCCEEECCSSCCSEES---CCCTTCCEEECCSS-CCSE----------ECCCCTTCCEEECCSS-CCSCC
T ss_pred ccc-cCcccCcCCEEECcCCccCccc---CcCCcCCEEECcCC-cCCc----------ccCCcCcCCEEECCCC-ccccc
Confidence 111 1100000000000000000000 11246666666665 2222 1123 57888888887 45556
Q ss_pred CccccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCcc--ccCCCCCCC-------------CCccEE
Q 044750 561 PDYLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLK--VLPNYLLRT-------------TTLQEL 625 (658)
Q Consensus 561 p~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~--~l~~~~~~l-------------~~L~~L 625 (658)
|.. +++|++|++++|. ++.+|. .+++|++|++++|+... .+|..+..+ ++|+.|
T Consensus 333 p~~---~~~L~~L~L~~N~-l~~lp~-------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L 401 (454)
T 1jl5_A 333 PAL---PPRLERLIASFNH-LAEVPE-------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQL 401 (454)
T ss_dssp CCC---CTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------
T ss_pred ccc---CCcCCEEECCCCc-cccccc-------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEE
Confidence 654 5788888888885 445772 46788888888887555 567666666 788888
Q ss_pred EEecChh
Q 044750 626 IIHRCPL 632 (658)
Q Consensus 626 ~l~~c~~ 632 (658)
++++|+-
T Consensus 402 ~ls~N~l 408 (454)
T 1jl5_A 402 HVETNPL 408 (454)
T ss_dssp -------
T ss_pred ECCCCcC
Confidence 8888763
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.6e-22 Score=203.17 Aligned_cols=92 Identities=26% Similarity=0.380 Sum_probs=78.5
Q ss_pred CCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCccccc
Q 044750 225 KLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGK 304 (658)
Q Consensus 225 ~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 304 (658)
....++.|++ ++ +.+..+|..++++++|++|++++|.++.+|..++++++|++|++++|. +..+|..++.
T Consensus 79 ~~~~l~~L~L------~~---n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~ 148 (328)
T 4fcg_A 79 TQPGRVALEL------RS---VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIAS 148 (328)
T ss_dssp TSTTCCEEEE------ES---SCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGG
T ss_pred cccceeEEEc------cC---CCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhc
Confidence 3567888888 44 667788988999999999999999999999999999999999999987 6688999999
Q ss_pred ccCCceeecCCcccCccCcCcC
Q 044750 305 LMNMRSLLNGQTYSLKYMPIGI 326 (658)
Q Consensus 305 L~~L~~L~l~~~~~~~~~p~~i 326 (658)
+++|++|++++|.....+|..+
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCS
T ss_pred CcCCCEEECCCCCCccccChhH
Confidence 9999999999987777666544
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=6.1e-22 Score=219.23 Aligned_cols=413 Identities=19% Similarity=0.127 Sum_probs=233.7
Q ss_pred CCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccc-cccCCCccceee
Q 044750 187 EGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPE-NIGKLIHLKYLN 265 (658)
Q Consensus 187 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~-~~~~l~~L~~L~ 265 (658)
.+...+|..+. ++++.|++++|.+. ...+..|.++++|++|+| ++ +.+..+|+ +|++|++|++|+
T Consensus 41 ~~l~~vP~~lp--~~~~~LdLs~N~i~---~l~~~~f~~l~~L~~L~L------s~---N~i~~i~~~~f~~L~~L~~L~ 106 (635)
T 4g8a_A 41 LNFYKIPDNLP--FSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDL------SR---CEIQTIEDGAYQSLSHLSTLI 106 (635)
T ss_dssp SCCSSCCSSSC--TTCCEEECTTSCCC---EECTTTTTTCTTCCEEEC------TT---CCCCEECTTTTTTCTTCCEEE
T ss_pred CCcCccCCCCC--cCCCEEEeeCCCCC---CCCHHHHhCCCCCCEEEC------CC---CcCCCcChhHhcCCCCCCEEE
Confidence 34555666553 48999999999865 455678999999999999 55 67777765 589999999999
Q ss_pred cCCccccccch-hhhcCCCCcEeecCCCCCCCCCCc-ccccccCCceeecCCcccCc-cCcCcCCCCCCCCccCceeecc
Q 044750 266 LSELCIERLPE-TLCELYNLRKLDIRRCPNLRELPA-GIGKLMNMRSLLNGQTYSLK-YMPIGISKLTSLRTLEKFVVGG 342 (658)
Q Consensus 266 L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~ 342 (658)
|++|.++.+|. .|+++++|++|++++|. +..+|. .++++++|++|++++|.... ..|..++.+++|++|++.. +
T Consensus 107 Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~--N 183 (635)
T 4g8a_A 107 LTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS--N 183 (635)
T ss_dssp CTTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS--S
T ss_pred ccCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC--c
Confidence 99999998886 57999999999999998 666665 58999999999999995433 3567788999999986432 2
Q ss_pred CCCCCccccccccccCcccCC-ce-----ecCcc----------------CCCChhhHhhcccCcccCCCceEEEecCcc
Q 044750 343 GVDGGSTCRLESLKNLQLLRK-CG-----IEGLS----------------NVSHLDEAERIGLHNMENLLRLHLVFDGVV 400 (658)
Q Consensus 343 ~~~~~~~~~~~~l~~L~~L~~-l~-----i~~~~----------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 400 (658)
......+..+..+.+++.+.. +. +.... +... .......+..+..++...+......
T Consensus 184 ~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~-~~~~~~~~~~l~~l~~~~l~~~~~~ 262 (635)
T 4g8a_A 184 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS-LNVMKTCIQGLAGLEVHRLVLGEFR 262 (635)
T ss_dssp CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSS-HHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred cccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhccccc-ccccchhhcCCcccccccccccccc
Confidence 211111223333333221110 00 00000 0000 0111111222333333333221110
Q ss_pred CCCCccc---ccCc----------------hhHHHH----------------------hhhcCCCCCCceEEEeeeCCCC
Q 044750 401 DGEGEEG---RRKN----------------EKDKQL----------------------LEALQPHLNVEELQICFYGGDI 439 (658)
Q Consensus 401 ~~~~~~~---~~~~----------------~~~~~~----------------------~~~l~~~~~L~~L~l~~~~~~~ 439 (658)
....... .... ...... ...+.....++.|.+.++....
T Consensus 263 ~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 342 (635)
T 4g8a_A 263 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 342 (635)
T ss_dssp TSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESS
T ss_pred cccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccC
Confidence 0000000 0000 000000 0111223345555555443322
Q ss_pred CChhhhcccccceEEeeCCCCCCCCCCCCCcc-ccceeccccccceEe--CccccCCCCC---CCCCCCCCCCC------
Q 044750 440 FPKWLTSLTYLRELNLWFCFNCEHLPPLGKLP-LEKLQLYILKSVKRV--GNEFLGIEES---SEDDPSSSSSS------ 507 (658)
Q Consensus 440 ~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lp-L~~L~l~~~~~l~~~--~~~~~~~~~~---~~~~~~~~~~~------ 507 (658)
++. ..++.|+.+++..+.... .+....+| |+.+.++........ ...+...... ..........+
T Consensus 343 ~~~--~~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l 419 (635)
T 4g8a_A 343 FPT--LKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGL 419 (635)
T ss_dssp CCC--CBCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTC
T ss_pred cCc--ccchhhhhcccccccCCC-Ccccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccccc
Confidence 221 123445555555443222 12223455 666665543321100 0000000000 00000000111
Q ss_pred -------------------CcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCC-CCccccCC
Q 044750 508 -------------------SSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKA-LPDYLLQS 567 (658)
Q Consensus 508 -------------------~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~-lp~~~~~l 567 (658)
..+..+++|+.++++.+ . .....+..+..+++|+.|++++|..... .|..+..+
T Consensus 420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-~-----l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l 493 (635)
T 4g8a_A 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-H-----TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 493 (635)
T ss_dssp TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS-C-----CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred ccccchhhhhcccccccccccccccccccccccccc-c-----cccccccccccchhhhhhhhhhcccccccCchhhhhc
Confidence 22334445555555544 1 1122245566789999999999876654 57778899
Q ss_pred CCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCcccc-CCCCCCCCCccEEEEecCh
Q 044750 568 TALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVL-PNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 568 ~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~ 631 (658)
++|++|+|++|......| ..+..+++|++|++++|. ++.+ |..+..+++|+.|++++|.
T Consensus 494 ~~L~~L~Ls~N~L~~l~~----~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 494 RNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp TTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSC
T ss_pred cccCEEECCCCccCCcCh----HHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCc
Confidence 999999999997655445 468899999999999995 5555 4568889999999999985
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=2e-22 Score=214.62 Aligned_cols=300 Identities=21% Similarity=0.211 Sum_probs=203.5
Q ss_pred cCCCceEEEEEEcCCCCCC-CccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc
Q 044750 174 SFGDKVRHLGLNFEGGAPL-PMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP 252 (658)
Q Consensus 174 ~~~~~~~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp 252 (658)
..+..++.+++.++.+..+ +..+.++++|+.|++++|... ...+..|.++++|++|++ ++ +.+..+|
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L------~~---n~l~~~~ 96 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS---AVEPGAFNNLFNLRTLGL------RS---NRLKLIP 96 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEEC------CS---SCCCSCC
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC---EeChhhhhCCccCCEEEC------CC---CcCCccC
Confidence 3467899999999998875 457889999999999999754 445678999999999999 55 6677777
Q ss_pred cc-ccCCCccceeecCCcccccc-chhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCc-CcCCCC
Q 044750 253 EN-IGKLIHLKYLNLSELCIERL-PETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMP-IGISKL 329 (658)
Q Consensus 253 ~~-~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l 329 (658)
.. +.++++|++|+|++|.++.+ |..+.++++|++|++++|......|..+..+++|++|++++|. +..+| ..+..+
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l 175 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHL 175 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTC
T ss_pred cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhccc
Confidence 54 78999999999999999855 5688999999999999998555556789999999999999994 44444 347778
Q ss_pred CCCCccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCccccc
Q 044750 330 TSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRR 409 (658)
Q Consensus 330 ~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 409 (658)
++|+.|++...... ......+..+++|+.|+++.+.....
T Consensus 176 ~~L~~L~l~~n~i~---------------------------------~~~~~~~~~l~~L~~L~l~~~~~~~~------- 215 (477)
T 2id5_A 176 HGLIVLRLRHLNIN---------------------------------AIRDYSFKRLYRLKVLEISHWPYLDT------- 215 (477)
T ss_dssp TTCCEEEEESCCCC---------------------------------EECTTCSCSCTTCCEEEEECCTTCCE-------
T ss_pred CCCcEEeCCCCcCc---------------------------------EeChhhcccCcccceeeCCCCccccc-------
Confidence 88887753221100 00011244566777777776542110
Q ss_pred CchhHHHHhhhcCCCCCCceEEEeeeCCCCCCh-hhhcccccceEEeeCCCCCCCCCCCCCccccceeccccccceEeCc
Q 044750 410 KNEKDKQLLEALQPHLNVEELQICFYGGDIFPK-WLTSLTYLRELNLWFCFNCEHLPPLGKLPLEKLQLYILKSVKRVGN 488 (658)
Q Consensus 410 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~l~~~~~lpL~~L~l~~~~~l~~~~~ 488 (658)
++.......+|+.|.+.++....+|. .+..+++|+.|++++|... ...
T Consensus 216 -------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----------------------~~~- 264 (477)
T 2id5_A 216 -------MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-----------------------TIE- 264 (477)
T ss_dssp -------ECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC-----------------------EEC-
T ss_pred -------cCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC-----------------------ccC-
Confidence 00111112245555555554444442 3445555555555555311 110
Q ss_pred cccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCc-cccCC
Q 044750 489 EFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPD-YLLQS 567 (658)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~-~~~~l 567 (658)
+..+..+++|++|+|+++ .+..+ .+..+..+++|+.|++++| .++.+|. .+..+
T Consensus 265 ------------------~~~~~~l~~L~~L~L~~n-~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 319 (477)
T 2id5_A 265 ------------------GSMLHELLRLQEIQLVGG-QLAVV-----EPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSV 319 (477)
T ss_dssp ------------------TTSCTTCTTCCEEECCSS-CCSEE-----CTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCG
T ss_pred ------------------hhhccccccCCEEECCCC-ccceE-----CHHHhcCcccCCEEECCCC-cCceeCHhHcCCC
Confidence 111346788888888887 33332 2456678888888888888 4555554 45678
Q ss_pred CCcceEEEccCCCCC
Q 044750 568 TALQELRIYFCDLLE 582 (658)
Q Consensus 568 ~~L~~L~l~~c~~l~ 582 (658)
++|++|++++|+..-
T Consensus 320 ~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 320 GNLETLILDSNPLAC 334 (477)
T ss_dssp GGCCEEECCSSCEEC
T ss_pred cccCEEEccCCCccC
Confidence 888888888887543
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=2.1e-21 Score=196.15 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=77.6
Q ss_pred ccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCc
Q 044750 510 VTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILED 589 (658)
Q Consensus 510 ~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~ 589 (658)
+..+++|++|+++++ .++.+ .+..+..+++|++|++++| .+..+|..+..+++|++|++++|... .+|.
T Consensus 213 l~~l~~L~~L~L~~N-~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~-~~~~--- 281 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHN-QIRMI-----ENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNIT-KVGV--- 281 (332)
T ss_dssp STTCTTCSCCBCCSS-CCCCC-----CTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCCC-BCCT---
T ss_pred hcCCCCCCEEECCCC-cCCcC-----ChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCCCC-ccCh---
Confidence 446778888888877 33332 2345667889999999988 56688888888999999999998643 4442
Q ss_pred cccC------CCCCCCeeeccCCCCc--cccCCCCCCCCCccEEEEecCh
Q 044750 590 RKTT------DIPRLSSLEIGYCPKL--KVLPNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 590 ~~~~------~~~~L~~L~l~~c~~l--~~l~~~~~~l~~L~~L~l~~c~ 631 (658)
..+. ..++|+.|++.+|+.. ...|..+..+++|+.+++++|.
T Consensus 282 ~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 1111 2578999999999854 3445667788999999998875
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=9.7e-22 Score=197.46 Aligned_cols=94 Identities=26% Similarity=0.413 Sum_probs=80.5
Q ss_pred CCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccchh
Q 044750 198 GLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPET 277 (658)
Q Consensus 198 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~ 277 (658)
..++++.|++.+|... .++..+..+++|++|++ ++ +.+..+|..++++++|++|++++|.++.+|..
T Consensus 79 ~~~~l~~L~L~~n~l~----~lp~~l~~l~~L~~L~L------~~---n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~ 145 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP----QFPDQAFRLSHLQHMTI------DA---AGLMELPDTMQQFAGLETLTLARNPLRALPAS 145 (328)
T ss_dssp TSTTCCEEEEESSCCS----SCCSCGGGGTTCSEEEE------ES---SCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG
T ss_pred cccceeEEEccCCCch----hcChhhhhCCCCCEEEC------CC---CCccchhHHHhccCCCCEEECCCCccccCcHH
Confidence 4578889999888753 44566777999999999 44 56668999999999999999999999999999
Q ss_pred hhcCCCCcEeecCCCCCCCCCCccccc
Q 044750 278 LCELYNLRKLDIRRCPNLRELPAGIGK 304 (658)
Q Consensus 278 i~~L~~L~~L~L~~~~~~~~lp~~i~~ 304 (658)
++++++|++|++++|...+.+|..+..
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred HhcCcCCCEEECCCCCCccccChhHhh
Confidence 999999999999999888899987654
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=5.9e-22 Score=197.88 Aligned_cols=255 Identities=19% Similarity=0.235 Sum_probs=172.8
Q ss_pred CcceEEEeecCCCCcccc--cccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCcccc-ccch
Q 044750 200 NRLRTLLIYDKGPSLRSS--ILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIE-RLPE 276 (658)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~--~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~-~lp~ 276 (658)
.+++.|+++++... + ..+..|.++++|++|++++ .+.....+|..++++++|++|++++|.++ .+|.
T Consensus 50 ~~l~~L~L~~~~l~---~~~~~~~~l~~l~~L~~L~L~~-------~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLP---KPYPIPSSLANLPYLNFLYIGG-------INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCEEEEEEECCCCS---SCEECCGGGGGCTTCSEEEEEE-------ETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred ceEEEEECCCCCcc---CCcccChhHhCCCCCCeeeCCC-------CCcccccCChhHhcCCCCCEEECcCCeeCCcCCH
Confidence 56777888777643 2 4466778888888888832 12344567778888888888888888887 7787
Q ss_pred hhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCC-CCCccCceeeccCCCCCcccccccc
Q 044750 277 TLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLT-SLRTLEKFVVGGGVDGGSTCRLESL 355 (658)
Q Consensus 277 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~-~L~~L~~~~~~~~~~~~~~~~~~~l 355 (658)
.++++++|++|++++|.....+|..+..+++|++|++++|.....+|..++.++ +|+.|+
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~------------------- 180 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT------------------- 180 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE-------------------
T ss_pred HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE-------------------
Confidence 888888888888888874457888888888888888888854445665555554 444442
Q ss_pred ccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHHHhhhcCCCCCCceEEEeee
Q 044750 356 KNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLNVEELQICFY 435 (658)
Q Consensus 356 ~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 435 (658)
++++.+ .
T Consensus 181 --------------------------------------L~~N~l---------------------------------~-- 187 (313)
T 1ogq_A 181 --------------------------------------ISRNRL---------------------------------T-- 187 (313)
T ss_dssp --------------------------------------CCSSEE---------------------------------E--
T ss_pred --------------------------------------CcCCee---------------------------------e--
Confidence 111110 0
Q ss_pred CCCCCChhhhcccccceEEeeCCCCCCCCCCCCCccccceeccccccceEeCccccCCCCCCCCCCCCCCCCCcccCCCC
Q 044750 436 GGDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLPLEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPK 515 (658)
Q Consensus 436 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lpL~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (658)
..+|..+..++ |+.|++++|...... +..+..+++
T Consensus 188 --~~~~~~~~~l~-L~~L~Ls~N~l~~~~------------------------------------------~~~~~~l~~ 222 (313)
T 1ogq_A 188 --GKIPPTFANLN-LAFVDLSRNMLEGDA------------------------------------------SVLFGSDKN 222 (313)
T ss_dssp --EECCGGGGGCC-CSEEECCSSEEEECC------------------------------------------GGGCCTTSC
T ss_pred --ccCChHHhCCc-ccEEECcCCcccCcC------------------------------------------CHHHhcCCC
Confidence 01244555554 777777777421111 112346777
Q ss_pred cceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCccccCCC
Q 044750 516 LKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILEDRKTTDI 595 (658)
Q Consensus 516 L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~ 595 (658)
|++|+++++ .+.. . ...+..+++|++|++++|.....+|..+..+++|++|++++|.....+| ....+
T Consensus 223 L~~L~L~~N-~l~~-----~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip-----~~~~l 290 (313)
T 1ogq_A 223 TQKIHLAKN-SLAF-----D-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-----QGGNL 290 (313)
T ss_dssp CSEEECCSS-EECC-----B-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC-----CSTTG
T ss_pred CCEEECCCC-ceee-----e-cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC-----CCccc
Confidence 788877776 2221 1 2235678889999999886655788888899999999999998777788 33778
Q ss_pred CCCCeeeccCCCCccccC
Q 044750 596 PRLSSLEIGYCPKLKVLP 613 (658)
Q Consensus 596 ~~L~~L~l~~c~~l~~l~ 613 (658)
++|+.|++.+|+.+...|
T Consensus 291 ~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 291 QRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GGSCGGGTCSSSEEESTT
T ss_pred cccChHHhcCCCCccCCC
Confidence 899999999998665543
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=6.3e-21 Score=200.07 Aligned_cols=335 Identities=20% Similarity=0.228 Sum_probs=170.1
Q ss_pred eEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCC
Q 044750 179 VRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKL 258 (658)
Q Consensus 179 ~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l 258 (658)
++++.+.++.+..+|.. .++|+.|++++|... . ++. .+++|++|++ ++ +.+..+|.. .
T Consensus 73 l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~---~-lp~---~~~~L~~L~l------~~---n~l~~l~~~---~ 130 (454)
T 1jl5_A 73 AHELELNNLGLSSLPEL---PPHLESLVASCNSLT---E-LPE---LPQSLKSLLV------DN---NNLKALSDL---P 130 (454)
T ss_dssp CSEEECTTSCCSCCCSC---CTTCSEEECCSSCCS---S-CCC---CCTTCCEEEC------CS---SCCSCCCSC---C
T ss_pred CCEEEecCCccccCCCC---cCCCCEEEccCCcCC---c-ccc---ccCCCcEEEC------CC---CccCcccCC---C
Confidence 34555555555444331 255666666666532 1 222 2355666666 32 333333321 1
Q ss_pred CccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccCce
Q 044750 259 IHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLEKF 338 (658)
Q Consensus 259 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 338 (658)
++|++|++++|.++.+| +++++++|++|++++|. +..+|..+ .+|++|++++| .+..+| .++.+++|+.|++.
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCCCc---ccccEEECcCC-cCCcCc-cccCCCCCCEEECC
Confidence 45666666666666666 46666666666666665 44455432 35666666666 333344 35566666655422
Q ss_pred eeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHHHh
Q 044750 339 VVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLL 418 (658)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 418 (658)
.. .. ...+... ..|+.+.+.+..- ..+ + .+..+++|+.|+++++.+... +
T Consensus 204 ~N--~l-~~l~~~~------~~L~~L~l~~n~l-~~l----p-~~~~l~~L~~L~l~~N~l~~l---------------~ 253 (454)
T 1jl5_A 204 NN--SL-KKLPDLP------LSLESIVAGNNIL-EEL----P-ELQNLPFLTTIYADNNLLKTL---------------P 253 (454)
T ss_dssp SS--CC-SSCCCCC------TTCCEEECCSSCC-SSC----C-CCTTCTTCCEEECCSSCCSSC---------------C
T ss_pred CC--cC-CcCCCCc------CcccEEECcCCcC-Ccc----c-ccCCCCCCCEEECCCCcCCcc---------------c
Confidence 11 11 1111110 1333333333211 111 1 255677788888877652210 0
Q ss_pred hhcCCCCCCceEEEeeeCCCCCChhhhcccccceEEeeCCCCCCCCCCCCCc-c-ccceeccccccceEeCccccCCCCC
Q 044750 419 EALQPHLNVEELQICFYGGDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKL-P-LEKLQLYILKSVKRVGNEFLGIEES 496 (658)
Q Consensus 419 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~l-p-L~~L~l~~~~~l~~~~~~~~~~~~~ 496 (658)
..+++++.|.+.++....+|.. +++|+.|++++|...+ ++ .+ + |+.|+++++.-. +
T Consensus 254 ---~~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~-l~---~~~~~L~~L~l~~N~l~--------~---- 311 (454)
T 1jl5_A 254 ---DLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG-LS---ELPPNLYYLNASSNEIR--------S---- 311 (454)
T ss_dssp ---SCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE-ES---CCCTTCCEEECCSSCCS--------E----
T ss_pred ---ccccccCEEECCCCcccccCcc---cCcCCEEECcCCccCc-cc---CcCCcCCEEECcCCcCC--------c----
Confidence 0136788888888777766664 4789999999986433 22 22 4 888888765321 1
Q ss_pred CCCCCCCCCCCCcccCC-CCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEE
Q 044750 497 SEDDPSSSSSSSSVTAF-PKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRI 575 (658)
Q Consensus 497 ~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l 575 (658)
+..+ ++|++|+++++ .++.+ +. .+++|++|++++| .++.+|. .+++|++|++
T Consensus 312 -------------i~~~~~~L~~L~Ls~N-~l~~l------p~---~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L 364 (454)
T 1jl5_A 312 -------------LCDLPPSLEELNVSNN-KLIEL------PA---LPPRLERLIASFN-HLAEVPE---LPQNLKQLHV 364 (454)
T ss_dssp -------------ECCCCTTCCEEECCSS-CCSCC------CC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEEC
T ss_pred -------------ccCCcCcCCEEECCCC-ccccc------cc---cCCcCCEEECCCC-ccccccc---hhhhccEEEC
Confidence 1123 58999999987 44432 22 3689999999998 5667877 4789999999
Q ss_pred ccCCCCC--CCcCCCccccCCC-------------CCCCeeeccCCCCcc--ccCCCCCCCCCccEEEEecCh
Q 044750 576 YFCDLLE--ELPILEDRKTTDI-------------PRLSSLEIGYCPKLK--VLPNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 576 ~~c~~l~--~~p~l~~~~~~~~-------------~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~c~ 631 (658)
++|.... .+|. .+..+ ++|+.|++++|+... .+|. +++.|.+.+|.
T Consensus 365 ~~N~l~~l~~ip~----~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~ 427 (454)
T 1jl5_A 365 EYNPLREFPDIPE----SVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSER 427 (454)
T ss_dssp CSSCCSSCCCCCT----TCCEEECCC-----------------------------------------------
T ss_pred CCCCCCcCCCChH----HHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcc
Confidence 9998766 5552 33334 789999999997543 4554 45666677664
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=4.5e-21 Score=193.53 Aligned_cols=291 Identities=18% Similarity=0.159 Sum_probs=172.1
Q ss_pred cceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccc-cccCCCccceeecCCcccccc-chhh
Q 044750 201 RLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPE-NIGKLIHLKYLNLSELCIERL-PETL 278 (658)
Q Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~i~~l-p~~i 278 (658)
+++.+.++++... .+|..+ .+.|++|++ ++ +.+..++. .++++++|++|++++|.++.+ |..+
T Consensus 32 ~l~~l~~~~~~l~----~lp~~~--~~~l~~L~L------~~---n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLE----KVPKDL--PPDTALLDL------QN---NKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 96 (330)
T ss_dssp ETTEEECTTSCCC----SCCCSC--CTTCCEEEC------CS---SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred CCeEEEecCCCcc----ccCccC--CCCCeEEEC------CC---CcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh
Confidence 5677777666532 223222 256777777 43 45555554 577777788888887777755 6677
Q ss_pred hcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccCceeeccCCCCCccccccccccC
Q 044750 279 CELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLEKFVVGGGVDGGSTCRLESLKNL 358 (658)
Q Consensus 279 ~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L 358 (658)
+++++|++|++++|. +..+|..+. ++|++|++++|......+..+..+++|++|++.......
T Consensus 97 ~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------- 159 (330)
T 1xku_A 97 APLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS-------------- 159 (330)
T ss_dssp TTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG--------------
T ss_pred cCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc--------------
Confidence 777788888887776 666776654 677788887774443333446677777776422110000
Q ss_pred cccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHHHhhhcCCCCCCceEEEeeeCCC
Q 044750 359 QLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLNVEELQICFYGGD 438 (658)
Q Consensus 359 ~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 438 (658)
. ......+..+++|+.|+++++. ..
T Consensus 160 -----~------------~~~~~~~~~l~~L~~L~l~~n~--------------------------------------l~ 184 (330)
T 1xku_A 160 -----S------------GIENGAFQGMKKLSYIRIADTN--------------------------------------IT 184 (330)
T ss_dssp -----G------------GBCTTGGGGCTTCCEEECCSSC--------------------------------------CC
T ss_pred -----c------------CcChhhccCCCCcCEEECCCCc--------------------------------------cc
Confidence 0 0000112233344444443332 11
Q ss_pred CCChhhhcccccceEEeeCCCCCCCCCCCCCccccceeccccccceEeCccccCCCCCCCCCCCCCCCCCcccCCCCcce
Q 044750 439 IFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLPLEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKS 518 (658)
Q Consensus 439 ~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lpL~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 518 (658)
.+|..+ .++|++|++++|.... . .+..+..+++|++
T Consensus 185 ~l~~~~--~~~L~~L~l~~n~l~~-----------------------~-------------------~~~~~~~l~~L~~ 220 (330)
T 1xku_A 185 TIPQGL--PPSLTELHLDGNKITK-----------------------V-------------------DAASLKGLNNLAK 220 (330)
T ss_dssp SCCSSC--CTTCSEEECTTSCCCE-----------------------E-------------------CTGGGTTCTTCCE
T ss_pred cCCccc--cccCCEEECCCCcCCc-----------------------c-------------------CHHHhcCCCCCCE
Confidence 223222 1556666666664211 0 0112446788888
Q ss_pred eeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCc---cccCCC
Q 044750 519 LDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILED---RKTTDI 595 (658)
Q Consensus 519 L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~---~~~~~~ 595 (658)
|+++++ .++.+ .+..+..+++|++|++++| .+..+|..+..+++|++|++++|.. +.+|...- ......
T Consensus 221 L~Ls~n-~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~i-~~~~~~~f~~~~~~~~~ 292 (330)
T 1xku_A 221 LGLSFN-SISAV-----DNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNI-SAIGSNDFCPPGYNTKK 292 (330)
T ss_dssp EECCSS-CCCEE-----CTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCC-CCCCTTSSSCSSCCTTS
T ss_pred EECCCC-cCcee-----ChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCcC-CccChhhcCCccccccc
Confidence 888887 33332 2345667889999999988 5668888888899999999999874 34442100 011235
Q ss_pred CCCCeeeccCCCCcc--ccCCCCCCCCCccEEEEecC
Q 044750 596 PRLSSLEIGYCPKLK--VLPNYLLRTTTLQELIIHRC 630 (658)
Q Consensus 596 ~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~c 630 (658)
++|+.|++.+|+... ..|..+..+++++.+++++|
T Consensus 293 ~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 788999999998543 33556777889999999887
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=3.8e-21 Score=192.04 Aligned_cols=146 Identities=23% Similarity=0.286 Sum_probs=122.5
Q ss_pred CceEEEEEEcCCCC---CCCccccCCCcceEEEeec-CCCCcccccccccccCCCcccEEEEccccCCCCCCccccc-cc
Q 044750 177 DKVRHLGLNFEGGA---PLPMSIYGLNRLRTLLIYD-KGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIR-EI 251 (658)
Q Consensus 177 ~~~~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~-~l 251 (658)
.+++++.+.++.+. .+|..+.++++|++|++++ |... ...+..|.++++|++|++ ++ +.+. .+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~---~~~p~~l~~l~~L~~L~L------s~---n~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV---GPIPPAIAKLTQLHYLYI------TH---TNVSGAI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE---SCCCGGGGGCTTCSEEEE------EE---ECCEEEC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc---ccCChhHhcCCCCCEEEC------cC---CeeCCcC
Confidence 67999999999887 4788899999999999995 6532 455778999999999999 33 4444 78
Q ss_pred cccccCCCccceeecCCcccc-ccchhhhcCCCCcEeecCCCCCCCCCCccccccc-CCceeecCCcccCccCcCcCCCC
Q 044750 252 PENIGKLIHLKYLNLSELCIE-RLPETLCELYNLRKLDIRRCPNLRELPAGIGKLM-NMRSLLNGQTYSLKYMPIGISKL 329 (658)
Q Consensus 252 p~~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~-~L~~L~l~~~~~~~~~p~~i~~l 329 (658)
|..+.++++|++|++++|.++ .+|..++++++|++|++++|.....+|..++.++ +|++|++++|.....+|..++.+
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 899999999999999999999 8999999999999999999985558999999998 99999999996555666655554
Q ss_pred CCCCcc
Q 044750 330 TSLRTL 335 (658)
Q Consensus 330 ~~L~~L 335 (658)
+ |+.|
T Consensus 198 ~-L~~L 202 (313)
T 1ogq_A 198 N-LAFV 202 (313)
T ss_dssp C-CSEE
T ss_pred c-ccEE
Confidence 3 4444
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=2.5e-23 Score=228.12 Aligned_cols=380 Identities=14% Similarity=0.081 Sum_probs=214.0
Q ss_pred CCCcceEEEeecCCCCcccccccccccC-CCc-ccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccc--
Q 044750 198 GLNRLRTLLIYDKGPSLRSSILPGLFSK-LAC-LRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIER-- 273 (658)
Q Consensus 198 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~-Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~-- 273 (658)
.+++|+.|+++++... ......+.. ++. |++|++.+|..+. ...++..+.++++|++|+|++|.++.
T Consensus 110 ~~~~L~~L~L~~~~i~---~~~~~~l~~~~~~~L~~L~L~~~~~~~------~~~l~~~~~~~~~L~~L~L~~~~~~~~~ 180 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVS---DLDLDRLAKARADDLETLKLDKCSGFT------TDGLLSIVTHCRKIKTLLMEESSFSEKD 180 (592)
T ss_dssp HCTTCCEEEEESCBCC---HHHHHHHHHHHGGGCCEEEEESCEEEE------HHHHHHHHHHCTTCSEEECTTCEEECCC
T ss_pred hCCCCCeEEeeccEec---HHHHHHHHHhccccCcEEECcCCCCcC------HHHHHHHHhhCCCCCEEECccccccCcc
Confidence 6888899998887532 111222333 344 8888886554221 12344444578888888888887652
Q ss_pred ---cchhhhcCCCCcEeecCCCCCC----CCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccCceeeccCCCC
Q 044750 274 ---LPETLCELYNLRKLDIRRCPNL----RELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLEKFVVGGGVDG 346 (658)
Q Consensus 274 ---lp~~i~~L~~L~~L~L~~~~~~----~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ 346 (658)
++..+..+++|++|++++|... ..++..+.++++|++|++++|. +..+|..+..+++|+.|.+...... .
T Consensus 181 ~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~--~ 257 (592)
T 3ogk_B 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNED--I 257 (592)
T ss_dssp SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCC--T
T ss_pred hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccc--c
Confidence 4445667888888888887732 2345556678888888888873 4456666777888888764321111 1
Q ss_pred CccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHHHhhhcCCCCC
Q 044750 347 GSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLN 426 (658)
Q Consensus 347 ~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 426 (658)
........+..+++|+.+++.... .......+..+++|+.|+++++.+ . .......+..+++
T Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~~-----~~~l~~~~~~~~~L~~L~Ls~~~l-~------------~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 258 GMPEKYMNLVFPRKLCRLGLSYMG-----PNEMPILFPFAAQIRKLDLLYALL-E------------TEDHCTLIQKCPN 319 (592)
T ss_dssp TCTTSSSCCCCCTTCCEEEETTCC-----TTTGGGGGGGGGGCCEEEETTCCC-C------------HHHHHHHHTTCTT
T ss_pred chHHHHHHhhccccccccCccccc-----hhHHHHHHhhcCCCcEEecCCCcC-C------------HHHHHHHHHhCcC
Confidence 112223344455555555554421 112233455677888888877651 1 2233344566778
Q ss_pred CceEEEeeeCCC-CCChhhhcccccceEEeeC----------CCCCCC--CCC-CCCcc-ccceeccccccceEeCcccc
Q 044750 427 VEELQICFYGGD-IFPKWLTSLTYLRELNLWF----------CFNCEH--LPP-LGKLP-LEKLQLYILKSVKRVGNEFL 491 (658)
Q Consensus 427 L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~----------~~~~~~--l~~-~~~lp-L~~L~l~~~~~l~~~~~~~~ 491 (658)
|+.|.+.++... .++.....+++|++|++++ |..... +.. ...+| |+.|.+. +..++.. .+.
T Consensus 320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~--~~~ 396 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNE--SLE 396 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHH--HHH
T ss_pred CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHH--HHH
Confidence 888888733211 1233334678888888884 443331 111 22356 7777762 2222111 000
Q ss_pred CCCCCCCCCCCCCCCCCcccCCCCcceeeecC---CccccccccccccccccCcCcccceeeeeCCCC-CC-CCCccc-c
Q 044750 492 GIEESSEDDPSSSSSSSSVTAFPKLKSLDIGG---MEELEEWNYRITRKENISIMPRLSSLWIRGCPK-LK-ALPDYL-L 565 (658)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~---~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~-l~-~lp~~~-~ 565 (658)
. ....+++|++|++++ +..+++.......+..+..+++|++|++++|.. +. ..+..+ .
T Consensus 397 ~----------------l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~ 460 (592)
T 3ogk_B 397 S----------------IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460 (592)
T ss_dssp H----------------HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH
T ss_pred H----------------HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH
Confidence 0 011377788888763 334443211111122244577888888876653 22 112222 3
Q ss_pred CCCCcceEEEccCCCCC-CCcCCCccccCCCCCCCeeeccCCCCccc--cCCCCCCCCCccEEEEecCh
Q 044750 566 QSTALQELRIYFCDLLE-ELPILEDRKTTDIPRLSSLEIGYCPKLKV--LPNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 566 ~l~~L~~L~l~~c~~l~-~~p~l~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~c~ 631 (658)
.+++|++|+|++|.... .++ ..+..+++|+.|++++|+ ++. ++.....+++|+.|++++|+
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~----~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLM----EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHH----HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred hCccceEeeccCCCCCHHHHH----HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 47778888888776432 122 234567788888888887 332 34444567788888888876
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=3.3e-19 Score=179.84 Aligned_cols=267 Identities=14% Similarity=0.181 Sum_probs=191.8
Q ss_pred CcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccch-hhhcCCCCcEeecCCCCCCCCCCcccccc
Q 044750 227 ACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPE-TLCELYNLRKLDIRRCPNLRELPAGIGKL 305 (658)
Q Consensus 227 ~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 305 (658)
..++++++ ++ ..+..+|..+. ++|++|++++|.++.+|. .++++++|++|++++|......|..+..+
T Consensus 31 c~l~~l~~------~~---~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (330)
T 1xku_A 31 CHLRVVQC------SD---LGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 99 (330)
T ss_dssp EETTEEEC------TT---SCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred CCCeEEEe------cC---CCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC
Confidence 36899999 54 66778887664 689999999999998876 79999999999999998444558899999
Q ss_pred cCCceeecCCcccCccCcCcCCCCCCCCccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCc
Q 044750 306 MNMRSLLNGQTYSLKYMPIGISKLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHN 385 (658)
Q Consensus 306 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~ 385 (658)
++|++|++++| .+..+|..+. ++|++|++.. +.. . . .....+..
T Consensus 100 ~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l~~--n~l-----------------~-----~---------~~~~~~~~ 143 (330)
T 1xku_A 100 VKLERLYLSKN-QLKELPEKMP--KTLQELRVHE--NEI-----------------T-----K---------VRKSVFNG 143 (330)
T ss_dssp TTCCEEECCSS-CCSBCCSSCC--TTCCEEECCS--SCC-----------------C-----B---------BCHHHHTT
T ss_pred CCCCEEECCCC-cCCccChhhc--ccccEEECCC--Ccc-----------------c-----c---------cCHhHhcC
Confidence 99999999999 4667887665 6788775321 110 0 0 00112345
Q ss_pred ccCCCceEEEecCccCCCCcccccCchhHHHHhhhcCCCCCCceEEEeeeCCCCCChhhhcccccceEEeeCCCCCCCCC
Q 044750 386 MENLLRLHLVFDGVVDGEGEEGRRKNEKDKQLLEALQPHLNVEELQICFYGGDIFPKWLTSLTYLRELNLWFCFNCEHLP 465 (658)
Q Consensus 386 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~ 465 (658)
+++|+.|+++.+.... ....+..+..+++|++|++++|... .+|
T Consensus 144 l~~L~~L~l~~n~l~~-----------------------------------~~~~~~~~~~l~~L~~L~l~~n~l~-~l~ 187 (330)
T 1xku_A 144 LNQMIVVELGTNPLKS-----------------------------------SGIENGAFQGMKKLSYIRIADTNIT-TIP 187 (330)
T ss_dssp CTTCCEEECCSSCCCG-----------------------------------GGBCTTGGGGCTTCCEEECCSSCCC-SCC
T ss_pred CccccEEECCCCcCCc-----------------------------------cCcChhhccCCCCcCEEECCCCccc-cCC
Confidence 5666666666554100 0012556777888888888888522 111
Q ss_pred CCCCccccceeccccccceEeCccccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcc
Q 044750 466 PLGKLPLEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPR 545 (658)
Q Consensus 466 ~~~~lpL~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~ 545 (658)
. ..+++|++|+++++ .++.+ .+..+..+++
T Consensus 188 ------------------------------------------~--~~~~~L~~L~l~~n-~l~~~-----~~~~~~~l~~ 217 (330)
T 1xku_A 188 ------------------------------------------Q--GLPPSLTELHLDGN-KITKV-----DAASLKGLNN 217 (330)
T ss_dssp ------------------------------------------S--SCCTTCSEEECTTS-CCCEE-----CTGGGTTCTT
T ss_pred ------------------------------------------c--cccccCCEEECCCC-cCCcc-----CHHHhcCCCC
Confidence 1 12478999999998 34332 2456778999
Q ss_pred cceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCC-CCC------C
Q 044750 546 LSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPN-YLL------R 618 (658)
Q Consensus 546 L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~------~ 618 (658)
|++|++++|......+..+..+++|++|++++|.. ..+| ..+..+++|++|++++|+ ++.++. .+. .
T Consensus 218 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp----~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~ 291 (330)
T 1xku_A 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVP----GGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTK 291 (330)
T ss_dssp CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-SSCC----TTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTT
T ss_pred CCEEECCCCcCceeChhhccCCCCCCEEECCCCcC-ccCC----hhhccCCCcCEEECCCCc-CCccChhhcCCcccccc
Confidence 99999999954444455788999999999999964 4677 367889999999999996 566553 332 2
Q ss_pred CCCccEEEEecChh
Q 044750 619 TTTLQELIIHRCPL 632 (658)
Q Consensus 619 l~~L~~L~l~~c~~ 632 (658)
.+.|+.|++++||-
T Consensus 292 ~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 292 KASYSGVSLFSNPV 305 (330)
T ss_dssp SCCCSEEECCSSSS
T ss_pred cccccceEeecCcc
Confidence 47899999999984
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=7.6e-19 Score=189.83 Aligned_cols=110 Identities=25% Similarity=0.215 Sum_probs=72.3
Q ss_pred eEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCC
Q 044750 179 VRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKL 258 (658)
Q Consensus 179 ~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l 258 (658)
++.+.+.++.+..+|..+. ++|+.|++++|.+. .++. .+++|++|++ ++ +.+..+|. .+
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~----~lp~---~l~~L~~L~L------s~---N~l~~lp~---~l 100 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT----SLPA---LPPELRTLEV------SG---NQLTSLPV---LP 100 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS----CCCC---CCTTCCEEEE------CS---CCCSCCCC---CC
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCCCC----CCCC---cCCCCCEEEc------CC---CcCCcCCC---CC
Confidence 5666777777666666554 67777777777643 2222 4567777777 44 45556665 56
Q ss_pred CccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCc
Q 044750 259 IHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQT 316 (658)
Q Consensus 259 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 316 (658)
++|++|++++|.++.+|. .+++|++|++++|. +..+|.. +++|++|++++|
T Consensus 101 ~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N 151 (622)
T 3g06_A 101 PGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN 151 (622)
T ss_dssp TTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS
T ss_pred CCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC
Confidence 777777777777777765 56777777777776 6666653 367777777776
No 50
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.82 E-value=2.9e-21 Score=207.56 Aligned_cols=142 Identities=15% Similarity=0.207 Sum_probs=111.3
Q ss_pred hhhHHHHHHhhCC-HHHHHHHHhhhcCCCCHHHHHHHHhccccccccccCcchHHHHhhccCCCCCCchhhHHh------
Q 044750 3 HAIVSSLLDQLKS-IAQDQVIGNLLRSKCTVKEWQRILESEMWKVEEIRKGLLAPLLLSYNDLPSNSMVKQCFS------ 75 (658)
Q Consensus 3 ~~~~~~i~~~c~g-Plai~~ig~~L~~~~~~~~W~~~~~~~~~~~~~~~~~i~~~L~~sY~~L~~~~~~k~cFl------ 75 (658)
.+++.+|+++||| ||||+++|+.|+.+ +. +|...+.+..+.. ...++..+|++||++||. ++|.||+
T Consensus 316 ~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~--~lk~~f~~Ls~~e 389 (549)
T 2a5y_B 316 EDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNKLESR--GLVGVECITPYSYKSLAM--ALQRCVEVLSDED 389 (549)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHHHHHH--CSSTTCCCSSSSSSSHHH--HHHHHHHTSCHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHHhhcc--cHHHHHHHHhcccccccH--HHHHHHhccchhh
Confidence 4689999999999 99999999999877 43 2323333322221 235699999999999999 9999999
Q ss_pred -----hhcCCCCCceeCHHHHHHHHHHc--CCcCCCc-chhHHHHHHHHHHHHHhccCceeeeecCCCCeeceEEcCHHH
Q 044750 76 -----YCAVFPKDHYMHKKELIDMWMAQ--GYLNAEE-DEEMEMVGEEYFNILATHSFFQEFETYGGDNEFMRCKMHDIV 147 (658)
Q Consensus 76 -----~~~~fp~~~~i~~~~Li~~w~~~--g~~~~~~-~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~mhdl~ 147 (658)
|||+||+++.|+ +++|+|+ ||+...+ +...+++++ |+++|++++|++....+ ... +|+|||++
T Consensus 390 r~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~-~~~mHdlv 460 (549)
T 2a5y_B 390 RSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVL-TFKIDHII 460 (549)
T ss_dssp HHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSC-EEECCHHH
T ss_pred hhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---Cce-EEEeChHH
Confidence 999999999998 8899999 9998776 566788888 99999999999987543 222 69999999
Q ss_pred HHHHHHhhccce
Q 044750 148 HDFAQFVSRKEC 159 (658)
Q Consensus 148 ~d~~~~~~~~~~ 159 (658)
|++|+.++.+++
T Consensus 461 ~~~a~~~~~~~~ 472 (549)
T 2a5y_B 461 HMFLKHVVDAQT 472 (549)
T ss_dssp HHHHHTTSCTHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887764
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=7.3e-19 Score=177.38 Aligned_cols=284 Identities=19% Similarity=0.186 Sum_probs=183.4
Q ss_pred ceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccc-ccccc
Q 044750 178 KVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREI-PENIG 256 (658)
Q Consensus 178 ~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~l-p~~~~ 256 (658)
..+.+.+.++.+..+|..+ .++++.|++++|... ...+..|.++++|++|++ ++ +.+..+ |..++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L------~~---n~l~~~~~~~~~ 99 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDIS---ELRKDDFKGLQHLYALVL------VN---NKISKIHEKAFS 99 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCC---EECTTTTTTCTTCCEEEC------CS---SCCCEECGGGST
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCC---ccCHhHhhCCCCCcEEEC------CC---CccCccCHhHhh
Confidence 3566777777777777665 379999999999754 444567899999999999 44 555555 77899
Q ss_pred CCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCc-ccccccCCceeecCCcccCc--cCcCcCCCCCCCC
Q 044750 257 KLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPA-GIGKLMNMRSLLNGQTYSLK--YMPIGISKLTSLR 333 (658)
Q Consensus 257 ~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~--~~p~~i~~l~~L~ 333 (658)
++++|++|++++|.++.+|..+. ++|++|++++|. +..+|. .+..+++|++|++++|.... ..|..+..+ +|+
T Consensus 100 ~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 100 PLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN 175 (332)
T ss_dssp TCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred CcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence 99999999999999999998776 899999999998 666665 58899999999999995432 344555555 666
Q ss_pred ccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchh
Q 044750 334 TLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEK 413 (658)
Q Consensus 334 ~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 413 (658)
.|++....- ..++ ..+ .++|+.|+++++.
T Consensus 176 ~L~l~~n~l------------------------~~l~----------~~~--~~~L~~L~l~~n~--------------- 204 (332)
T 2ft3_A 176 YLRISEAKL------------------------TGIP----------KDL--PETLNELHLDHNK--------------- 204 (332)
T ss_dssp CCBCCSSBC------------------------SSCC----------SSS--CSSCSCCBCCSSC---------------
T ss_pred EEECcCCCC------------------------CccC----------ccc--cCCCCEEECCCCc---------------
Confidence 664211100 0000 000 1234444444333
Q ss_pred HHHHhhhcCCCCCCceEEEeeeCCCCC-ChhhhcccccceEEeeCCCCCCCCCCCCCccccceeccccccceEeCccccC
Q 044750 414 DKQLLEALQPHLNVEELQICFYGGDIF-PKWLTSLTYLRELNLWFCFNCEHLPPLGKLPLEKLQLYILKSVKRVGNEFLG 492 (658)
Q Consensus 414 ~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lpL~~L~l~~~~~l~~~~~~~~~ 492 (658)
...+ +..+..+++|++|++++|......
T Consensus 205 -----------------------i~~~~~~~l~~l~~L~~L~L~~N~l~~~~---------------------------- 233 (332)
T 2ft3_A 205 -----------------------IQAIELEDLLRYSKLYRLGLGHNQIRMIE---------------------------- 233 (332)
T ss_dssp -----------------------CCCCCTTSSTTCTTCSCCBCCSSCCCCCC----------------------------
T ss_pred -----------------------CCccCHHHhcCCCCCCEEECCCCcCCcCC----------------------------
Confidence 1111 244555666666666666422111
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCc-cccC-----
Q 044750 493 IEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPD-YLLQ----- 566 (658)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~-~~~~----- 566 (658)
+..+..+++|++|+++++ .++.+ +..+..+++|++|++++|+ ++.+|. .+..
T Consensus 234 --------------~~~~~~l~~L~~L~L~~N-~l~~l------p~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 234 --------------NGSLSFLPTLRELHLDNN-KLSRV------PAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGV 291 (332)
T ss_dssp --------------TTGGGGCTTCCEEECCSS-CCCBC------CTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCS
T ss_pred --------------hhHhhCCCCCCEEECCCC-cCeec------ChhhhcCccCCEEECCCCC-CCccChhHcccccccc
Confidence 112346777788888776 34322 4456677888888888874 444433 2221
Q ss_pred -CCCcceEEEccCCCC--CCCcCCCccccCCCCCCCeeeccCCC
Q 044750 567 -STALQELRIYFCDLL--EELPILEDRKTTDIPRLSSLEIGYCP 607 (658)
Q Consensus 567 -l~~L~~L~l~~c~~l--~~~p~l~~~~~~~~~~L~~L~l~~c~ 607 (658)
.++|+.|++++|+.. ...| ..+.++++|+.|++++|.
T Consensus 292 ~~~~l~~L~l~~N~~~~~~~~~----~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVPYWEVQP----ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCBSEEECCSSSSCGGGSCG----GGGTTBCCSTTEEC----
T ss_pred ccccccceEeecCcccccccCc----ccccccchhhhhhccccc
Confidence 467888888888754 2233 456778888888888875
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=1.2e-22 Score=215.53 Aligned_cols=112 Identities=15% Similarity=0.125 Sum_probs=63.5
Q ss_pred CcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccc-cchhh
Q 044750 200 NRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIER-LPETL 278 (658)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i 278 (658)
++|+.|+++++.... ..+...+..+++|++|++++|. +.. .....++..+..+++|++|++++|.++. .+..+
T Consensus 3 ~~l~~L~Ls~~~l~~--~~~~~~~~~~~~L~~L~L~~~~-l~~---~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 76 (461)
T 1z7x_W 3 LDIQSLDIQCEELSD--ARWAELLPLLQQCQVVRLDDCG-LTE---ARCKDISSALRVNPALAELNLRSNELGDVGVHCV 76 (461)
T ss_dssp EEEEEEEEESCCCCH--HHHHHHHHHHTTCSEEEEESSC-CCH---HHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred ccceehhhhhcccCc--hhHHHHHhhcCCccEEEccCCC-CCH---HHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHH
Confidence 456666666665321 2223335666777777774432 111 1222456666667777777777777653 22222
Q ss_pred -hcCC----CCcEeecCCCCCCC----CCCcccccccCCceeecCCcc
Q 044750 279 -CELY----NLRKLDIRRCPNLR----ELPAGIGKLMNMRSLLNGQTY 317 (658)
Q Consensus 279 -~~L~----~L~~L~L~~~~~~~----~lp~~i~~L~~L~~L~l~~~~ 317 (658)
..+. +|++|++++|.... .+|..+..+++|++|++++|.
T Consensus 77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 2344 57777777776321 346666777777777777764
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=6.3e-19 Score=175.77 Aligned_cols=70 Identities=19% Similarity=0.192 Sum_probs=38.2
Q ss_pred ccccccccc-ccCCCccceeecCCcccccc---chhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCc
Q 044750 246 NFIREIPEN-IGKLIHLKYLNLSELCIERL---PETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQT 316 (658)
Q Consensus 246 ~~~~~lp~~-~~~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 316 (658)
+.+..+|.. +.++++|++|++++|.++.+ |..+..+++|++|++++|. +..+|..+..+++|++|++++|
T Consensus 38 n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n 111 (306)
T 2z66_A 38 NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS 111 (306)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTS
T ss_pred CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCC
Confidence 334445443 45555666666666555433 4455555666666666554 4455555555556666665555
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=3e-19 Score=181.89 Aligned_cols=70 Identities=21% Similarity=0.252 Sum_probs=36.9
Q ss_pred cccccccc-cccCCCccceeecCCccccccc-hhhhcCCCCcEeecCCCCCCCCCCcc-cccccCCceeecCCc
Q 044750 246 NFIREIPE-NIGKLIHLKYLNLSELCIERLP-ETLCELYNLRKLDIRRCPNLRELPAG-IGKLMNMRSLLNGQT 316 (658)
Q Consensus 246 ~~~~~lp~-~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~ 316 (658)
+.+..+|. .+.++++|++|++++|.++.++ ..++++++|++|++++|. +..+|.. ++.+++|++|++++|
T Consensus 62 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 62 NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGN 134 (353)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTC
T ss_pred CcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCC
Confidence 33444443 4555555555555555555442 345555555555555554 4444443 455555555555555
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=2.4e-21 Score=205.47 Aligned_cols=391 Identities=16% Similarity=0.048 Sum_probs=213.7
Q ss_pred CCceEEEEEEcCCCCCCC--ccccCCCcceEEEeecCCCCcc-cccccccccCCCcccEEEEccccCCCCCCcccccc-c
Q 044750 176 GDKVRHLGLNFEGGAPLP--MSIYGLNRLRTLLIYDKGPSLR-SSILPGLFSKLACLRALVIRQLSSFSHPSPNFIRE-I 251 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~-l 251 (658)
++.++.+++.++.+...+ ..+..+++|+.|++++|..... ...++..+..+++|++|+++ + +.+.. -
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls------~---n~l~~~~ 72 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR------S---NELGDVG 72 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT------T---CCCHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCC------C---CcCChHH
Confidence 457888999888776422 2266889999999999975311 01335667888999999993 3 33322 1
Q ss_pred cccc-cCCC----ccceeecCCcccc-----ccchhhhcCCCCcEeecCCCCCCCCCCcccc-----cccCCceeecCCc
Q 044750 252 PENI-GKLI----HLKYLNLSELCIE-----RLPETLCELYNLRKLDIRRCPNLRELPAGIG-----KLMNMRSLLNGQT 316 (658)
Q Consensus 252 p~~~-~~l~----~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~-----~L~~L~~L~l~~~ 316 (658)
+..+ ..++ +|++|++++|.++ .+|..+.++++|++|++++|......+..+. ..++|++|++++|
T Consensus 73 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 152 (461)
T 1z7x_W 73 VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152 (461)
T ss_dssp HHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC
Confidence 2222 2344 6999999999987 4678889999999999999873222233222 2567999999998
Q ss_pred ccCcc----CcCcCCCCCCCCccCceeeccCCCCCccccc-cccc-cCcccCCceecCccCCCChhhHhhcccCcccCCC
Q 044750 317 YSLKY----MPIGISKLTSLRTLEKFVVGGGVDGGSTCRL-ESLK-NLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLL 390 (658)
Q Consensus 317 ~~~~~----~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~-~~l~-~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~ 390 (658)
..... ++..+..+++|++|++....... .....+ ..+. ...+|+.+.+.+..-...........+..+++|+
T Consensus 153 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~--~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 153 SLSAASCEPLASVLRAKPDFKELTVSNNDINE--AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230 (461)
T ss_dssp CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH--HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEECcCCCcch--HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence 54332 24445667788877543221100 000011 1111 1234445555443221111112233345566777
Q ss_pred ceEEEecCccCCCCcccccCchhHHHHhhhc-CCCCCCceEEEeeeCCCC-----CChhhhcccccceEEeeCCCCCCCC
Q 044750 391 RLHLVFDGVVDGEGEEGRRKNEKDKQLLEAL-QPHLNVEELQICFYGGDI-----FPKWLTSLTYLRELNLWFCFNCEHL 464 (658)
Q Consensus 391 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~~l 464 (658)
.|+++++.+.. .....+...+ ...++++.|.+.++.... ++..+..+++|++|++++|......
T Consensus 231 ~L~Ls~n~l~~----------~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 231 ELALGSNKLGD----------VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp EEECCSSBCHH----------HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred EEeccCCcCCh----------HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence 77776654100 0011111222 234566666666654433 3444445566666666666321000
Q ss_pred CCCCCccccceeccccccceEeCccccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcCc
Q 044750 465 PPLGKLPLEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMP 544 (658)
Q Consensus 465 ~~~~~lpL~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~ 544 (658)
.......+ ....++|++|++++|. ++.... ...+..+..++
T Consensus 301 ------------------~~~l~~~l-------------------~~~~~~L~~L~L~~n~-l~~~~~-~~l~~~l~~~~ 341 (461)
T 1z7x_W 301 ------------------ARLLCETL-------------------LEPGCQLESLWVKSCS-FTAACC-SHFSSVLAQNR 341 (461)
T ss_dssp ------------------HHHHHHHH-------------------TSTTCCCCEEECTTSC-CBGGGH-HHHHHHHHHCS
T ss_pred ------------------HHHHHHHh-------------------ccCCccceeeEcCCCC-CchHHH-HHHHHHHhhCC
Confidence 00000000 1134688888888873 333211 01133445678
Q ss_pred ccceeeeeCCCCCCCCCcccc----C-CCCcceEEEccCCCCC----CCcCCCccccCCCCCCCeeeccCCCCccc----
Q 044750 545 RLSSLWIRGCPKLKALPDYLL----Q-STALQELRIYFCDLLE----ELPILEDRKTTDIPRLSSLEIGYCPKLKV---- 611 (658)
Q Consensus 545 ~L~~L~L~~c~~l~~lp~~~~----~-l~~L~~L~l~~c~~l~----~~p~l~~~~~~~~~~L~~L~l~~c~~l~~---- 611 (658)
+|++|++++|......+..+. . .++|++|++++|.... .+| ..+..+++|++|++++|+.-..
T Consensus 342 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~----~~l~~~~~L~~L~l~~N~i~~~~~~~ 417 (461)
T 1z7x_W 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA----ATLLANHSLRELDLSNNCLGDAGILQ 417 (461)
T ss_dssp SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH----HHHHHCCCCCEEECCSSSCCHHHHHH
T ss_pred CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH----HHHHhCCCccEEECCCCCCCHHHHHH
Confidence 899999988843222122222 2 6789999999886543 455 3566788999999999864322
Q ss_pred cCCCC-CCCCCccEEEEecC
Q 044750 612 LPNYL-LRTTTLQELIIHRC 630 (658)
Q Consensus 612 l~~~~-~~l~~L~~L~l~~c 630 (658)
+...+ ...++|+.|++.++
T Consensus 418 l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 418 LVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTC
T ss_pred HHHHhccCCcchhheeeccc
Confidence 11111 12245666666554
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=6.5e-19 Score=175.66 Aligned_cols=140 Identities=24% Similarity=0.213 Sum_probs=104.9
Q ss_pred EEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccc---cccccC
Q 044750 181 HLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREI---PENIGK 257 (658)
Q Consensus 181 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~l---p~~~~~ 257 (658)
.+....+++..+|..+. ++|+.|++++|... ......|.++++|++|++ ++ +.+..+ |..+..
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~---~i~~~~~~~l~~L~~L~L------~~---n~l~~~~~~~~~~~~ 76 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQ---SLPHGVFDKLTQLTKLSL------SS---NGLSFKGCCSQSDFG 76 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCC---CCCTTTTTTCTTCSEEEC------CS---SCCCEEEEEEHHHHS
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccC---ccCHhHhhccccCCEEEC------CC---CccCcccCccccccc
Confidence 45555666666666543 68999999998754 444456889999999999 44 444433 567778
Q ss_pred CCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCC--cccccccCCceeecCCcccCccCcCcCCCCCCCCcc
Q 044750 258 LIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELP--AGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTL 335 (658)
Q Consensus 258 l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 335 (658)
+++|++|++++|.++.+|..+..+++|++|++++|. +..+| ..+..+++|++|++++|......|..+..+++|++|
T Consensus 77 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred ccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 999999999999999999889999999999999987 66555 368889999999999885444444445555555554
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=3e-18 Score=180.64 Aligned_cols=99 Identities=23% Similarity=0.280 Sum_probs=55.8
Q ss_pred CcccEEEEccccCCCCCCccccccc-cccccCCCccceeecCCccccccc-hhhhcCCCCcEeecCCCCCCCCCCcc-cc
Q 044750 227 ACLRALVIRQLSSFSHPSPNFIREI-PENIGKLIHLKYLNLSELCIERLP-ETLCELYNLRKLDIRRCPNLRELPAG-IG 303 (658)
Q Consensus 227 ~~Lr~L~L~~~~~l~~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~-i~ 303 (658)
+.|++|+| ++ +.+..+ |..+.++++|++|+|++|.++.++ ..+.++++|++|+|++|. +..+|.. +.
T Consensus 75 ~~l~~L~L------~~---n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 144 (452)
T 3zyi_A 75 SNTRYLNL------ME---NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFE 144 (452)
T ss_dssp TTCSEEEC------CS---SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSS
T ss_pred CCccEEEC------cC---CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhc
Confidence 45666666 33 334433 445666666777777766666444 456666677777776665 4444433 55
Q ss_pred cccCCceeecCCcccCccCcCcCCCCCCCCcc
Q 044750 304 KLMNMRSLLNGQTYSLKYMPIGISKLTSLRTL 335 (658)
Q Consensus 304 ~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 335 (658)
.+++|++|++++|......+..+..+++|+.|
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence 66677777776663322222234455555544
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=4.2e-18 Score=178.88 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=44.4
Q ss_pred ccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCC-ccccCCCCcceEEEccCCC
Q 044750 510 VTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALP-DYLLQSTALQELRIYFCDL 580 (658)
Q Consensus 510 ~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~ 580 (658)
+..+++|+.|+++++ .++.+ .+..+..+++|+.|+|++| .++.+| ..+..+++|+.|+|++|+.
T Consensus 227 ~~~l~~L~~L~L~~n-~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 227 FQGLMHLQKLWMIQS-QIQVI-----ERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTTCTTCCEEECTTC-CCCEE-----CTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred hccCccCCEEECCCC-ceeEE-----ChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence 456788888888887 33332 2455667888888888887 444454 3456788888888888764
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=2.1e-20 Score=204.89 Aligned_cols=406 Identities=13% Similarity=0.034 Sum_probs=249.9
Q ss_pred CCceEEEEEEcCCCCC-CCccccC-CCc-ceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc
Q 044750 176 GDKVRHLGLNFEGGAP-LPMSIYG-LNR-LRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP 252 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~-~~~~~~~-~~~-L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp 252 (658)
.+.++.+.+.++.+.. .+..+.. +++ |+.|.+.+|.. .....+.....++++|++|++++|.. .+ .....++
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~~-~~---~~~~~l~ 185 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG-FTTDGLLSIVTHCRKIKTLLMEESSF-SE---KDGKWLH 185 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE-EEHHHHHHHHHHCTTCSEEECTTCEE-EC---CCSHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC-cCHHHHHHHHhhCCCCCEEECccccc-cC---cchhHHH
Confidence 4678889998876542 1222333 445 99999998862 11122333446899999999955421 11 1111144
Q ss_pred ccccCCCccceeecCCcccc-----ccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccC---ccCcC
Q 044750 253 ENIGKLIHLKYLNLSELCIE-----RLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSL---KYMPI 324 (658)
Q Consensus 253 ~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~---~~~p~ 324 (658)
.....+++|++|++++|.++ .++..+.++++|++|++++|. +..+|..+..+++|++|++++.... ...+.
T Consensus 186 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred HHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHH
Confidence 44567899999999999885 556667889999999999987 6778888999999999999864322 22334
Q ss_pred cCCCCCCCCccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCC
Q 044750 325 GISKLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEG 404 (658)
Q Consensus 325 ~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 404 (658)
.+..+++|+.|.+.. ......+..+ ..+++|+.+.+.++. +. .......+..+++|+.|++..+-
T Consensus 265 ~l~~~~~L~~L~l~~---~~~~~l~~~~---~~~~~L~~L~Ls~~~-l~--~~~~~~~~~~~~~L~~L~L~~~~------ 329 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSY---MGPNEMPILF---PFAAQIRKLDLLYAL-LE--TEDHCTLIQKCPNLEVLETRNVI------ 329 (592)
T ss_dssp CCCCCTTCCEEEETT---CCTTTGGGGG---GGGGGCCEEEETTCC-CC--HHHHHHHHTTCTTCCEEEEEGGG------
T ss_pred HhhccccccccCccc---cchhHHHHHH---hhcCCCcEEecCCCc-CC--HHHHHHHHHhCcCCCEEeccCcc------
Confidence 566777777774322 2222223333 344556666666543 11 12222336788999999998332
Q ss_pred cccccCchhHHHHhhhcCCCCCCceEEEee----------eCCCC---CChhhhcccccceEEeeCCCCCC-CCCCCCC-
Q 044750 405 EEGRRKNEKDKQLLEALQPHLNVEELQICF----------YGGDI---FPKWLTSLTYLRELNLWFCFNCE-HLPPLGK- 469 (658)
Q Consensus 405 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~----------~~~~~---~p~~~~~l~~L~~L~l~~~~~~~-~l~~~~~- 469 (658)
....+......+++|+.|.+.+ +.... ++.....+++|++|++..+.... .+..++.
T Consensus 330 --------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 330 --------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401 (592)
T ss_dssp --------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred --------CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence 1223333334567899999994 33222 12223468999999996554322 1222333
Q ss_pred cc-ccceeccccccceEeCccccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCcc-ccccccccccccccCcCcccc
Q 044750 470 LP-LEKLQLYILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEE-LEEWNYRITRKENISIMPRLS 547 (658)
Q Consensus 470 lp-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-L~~~~~~~~~~~~~~~~~~L~ 547 (658)
+| |+.|.+..+.. .+.+.+.+ ....++..+.++++|++|++++|.. +.+... ......+++|+
T Consensus 402 ~~~L~~L~l~~~~~----~n~l~~~p-------~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~----~~~~~~~~~L~ 466 (592)
T 3ogk_B 402 LKNLCDFRLVLLDR----EERITDLP-------LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL----SYIGQYSPNVR 466 (592)
T ss_dssp CCSCCEEEEEECSC----CSCCSSCC-------CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH----HHHHHSCTTCC
T ss_pred CCCCcEEEEeecCC----CccccCch-------HHHHHHHHHHhCCCCCEEEEecCCCCccHHHH----HHHHHhCccce
Confidence 67 88888875431 11111100 0000112245699999999987653 222211 11223589999
Q ss_pred eeeeeCCCCCC-CCCccccCCCCcceEEEccCCCCCC-CcCCCccccCCCCCCCeeeccCCCCcccc--CCCCCCCCCcc
Q 044750 548 SLWIRGCPKLK-ALPDYLLQSTALQELRIYFCDLLEE-LPILEDRKTTDIPRLSSLEIGYCPKLKVL--PNYLLRTTTLQ 623 (658)
Q Consensus 548 ~L~L~~c~~l~-~lp~~~~~l~~L~~L~l~~c~~l~~-~p~l~~~~~~~~~~L~~L~l~~c~~l~~l--~~~~~~l~~L~ 623 (658)
+|++++|.... .++..+..+++|++|+|++|+.... ++ .....+++|+.|++++|+ ++.. ......+|.+.
T Consensus 467 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~ 541 (592)
T 3ogk_B 467 WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA----AAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWN 541 (592)
T ss_dssp EEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH----HHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEE
T ss_pred EeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH----HHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcE
Confidence 99999986332 3455667899999999999984221 23 234578999999999998 4432 22234578887
Q ss_pred EEEEecC
Q 044750 624 ELIIHRC 630 (658)
Q Consensus 624 ~L~l~~c 630 (658)
...+...
T Consensus 542 ~~~~~~~ 548 (592)
T 3ogk_B 542 IELIPSR 548 (592)
T ss_dssp EEEECCC
T ss_pred EEEecCc
Confidence 7777655
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=5.8e-18 Score=177.77 Aligned_cols=234 Identities=19% Similarity=0.227 Sum_probs=134.5
Q ss_pred cccccccccccCCCccceeecCCccccccc-hhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcC
Q 044750 246 NFIREIPENIGKLIHLKYLNLSELCIERLP-ETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPI 324 (658)
Q Consensus 246 ~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~ 324 (658)
..+..+|..+. +++++|+|++|.++.++ ..+.++++|++|+|++|......|..+..+++|++|++++|. +..+|.
T Consensus 53 ~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~ 129 (440)
T 3zyj_A 53 KNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPN 129 (440)
T ss_dssp CCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCT
T ss_pred CCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCH
Confidence 44566666554 56777777777777554 466777777777777776323333556677777777777763 333332
Q ss_pred -cCCCCCCCCccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCC
Q 044750 325 -GISKLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGE 403 (658)
Q Consensus 325 -~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 403 (658)
.+..+++|++|+ ++++.
T Consensus 130 ~~~~~l~~L~~L~---------------------------------------------------------L~~N~----- 147 (440)
T 3zyj_A 130 GAFVYLSKLKELW---------------------------------------------------------LRNNP----- 147 (440)
T ss_dssp TTSCSCSSCCEEE---------------------------------------------------------CCSCC-----
T ss_pred hHhhccccCceee---------------------------------------------------------CCCCc-----
Confidence 244444444432 21111
Q ss_pred CcccccCchhHHHHhhhcCCCCCCceEEEeeeCCCCC-ChhhhcccccceEEeeCCCCCCCCCCCCCccccceecccccc
Q 044750 404 GEEGRRKNEKDKQLLEALQPHLNVEELQICFYGGDIF-PKWLTSLTYLRELNLWFCFNCEHLPPLGKLPLEKLQLYILKS 482 (658)
Q Consensus 404 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lpL~~L~l~~~~~ 482 (658)
...+ +..+..+++|++|++++|.....++.
T Consensus 148 ---------------------------------i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~---------------- 178 (440)
T 3zyj_A 148 ---------------------------------IESIPSYAFNRIPSLRRLDLGELKRLSYISE---------------- 178 (440)
T ss_dssp ---------------------------------CCEECTTTTTTCTTCCEEECCCCTTCCEECT----------------
T ss_pred ---------------------------------ccccCHHHhhhCcccCEeCCCCCCCcceeCc----------------
Confidence 0001 23455677888899888765443332
Q ss_pred ceEeCccccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCc
Q 044750 483 VKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPD 562 (658)
Q Consensus 483 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~ 562 (658)
..+..+++|++|+++++ .++.+ ..+..+++|++|+|++|......|.
T Consensus 179 -------------------------~~~~~l~~L~~L~L~~n-~l~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~ 225 (440)
T 3zyj_A 179 -------------------------GAFEGLSNLRYLNLAMC-NLREI-------PNLTPLIKLDELDLSGNHLSAIRPG 225 (440)
T ss_dssp -------------------------TTTTTCSSCCEEECTTS-CCSSC-------CCCTTCSSCCEEECTTSCCCEECTT
T ss_pred -------------------------chhhcccccCeecCCCC-cCccc-------cccCCCcccCEEECCCCccCccChh
Confidence 01235666666666665 33322 1245667777777777643333455
Q ss_pred cccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCC-CCCCCCCccEEEEecCh
Q 044750 563 YLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPN-YLLRTTTLQELIIHRCP 631 (658)
Q Consensus 563 ~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~ 631 (658)
.+..+++|++|++++|......| ..+..+++|+.|++++|. ++.+|. .+..+++|+.|++++||
T Consensus 226 ~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 226 SFQGLMHLQKLWMIQSQIQVIER----NAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTTTCTTCCEEECTTCCCCEECT----TSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred hhccCccCCEEECCCCceeEECh----hhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 66677777777777775443333 345666777777777774 444443 45566777777777666
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=2.2e-21 Score=212.87 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=58.5
Q ss_pred CCCCcceeeec-----CCccccccccccccccccCcCcccceeeeeCCCCCC-CCCcccc-CCCCcceEEEccCCCCCCC
Q 044750 512 AFPKLKSLDIG-----GMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLK-ALPDYLL-QSTALQELRIYFCDLLEEL 584 (658)
Q Consensus 512 ~~~~L~~L~L~-----~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~-~lp~~~~-~l~~L~~L~l~~c~~l~~~ 584 (658)
.+++|++|++. +|..+++..........+..+++|++|++++ .+. ..+..+. .+++|+.|++++|......
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~ 472 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG 472 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence 46677777776 3444443221111122234566777777754 222 1122222 3667777777776532221
Q ss_pred cCCCccccCCCCCCCeeeccCCCCccc-cCCCCCCCCCccEEEEecChh
Q 044750 585 PILEDRKTTDIPRLSSLEIGYCPKLKV-LPNYLLRTTTLQELIIHRCPL 632 (658)
Q Consensus 585 p~l~~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~ 632 (658)
+. .....+++|++|++++|+.... +......+++|+.|++++|+.
T Consensus 473 ~~---~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 473 MH---HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HH---HHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HH---HHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 10 0114467777777777764221 122334466777777777764
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=1.1e-17 Score=176.36 Aligned_cols=234 Identities=21% Similarity=0.242 Sum_probs=143.6
Q ss_pred cccccccccccCCCccceeecCCcccccc-chhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcC
Q 044750 246 NFIREIPENIGKLIHLKYLNLSELCIERL-PETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPI 324 (658)
Q Consensus 246 ~~~~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~ 324 (658)
..+..+|..+. ++|++|+|++|.++.+ |..++++++|++|+|++|......|..+..+++|++|++++|. +..+|.
T Consensus 64 ~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 140 (452)
T 3zyi_A 64 RGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPS 140 (452)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCT
T ss_pred CCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccCh
Confidence 55667776554 5788888888888855 4567888888888888887333444667788888888888873 333333
Q ss_pred c-CCCCCCCCccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCC
Q 044750 325 G-ISKLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGE 403 (658)
Q Consensus 325 ~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 403 (658)
. +..+++|++|+ ++++.
T Consensus 141 ~~~~~l~~L~~L~---------------------------------------------------------L~~N~----- 158 (452)
T 3zyi_A 141 GAFEYLSKLRELW---------------------------------------------------------LRNNP----- 158 (452)
T ss_dssp TTSSSCTTCCEEE---------------------------------------------------------CCSCC-----
T ss_pred hhhcccCCCCEEE---------------------------------------------------------CCCCC-----
Confidence 2 44444444442 22221
Q ss_pred CcccccCchhHHHHhhhcCCCCCCceEEEeeeCCCCC-ChhhhcccccceEEeeCCCCCCCCCCCCCccccceecccccc
Q 044750 404 GEEGRRKNEKDKQLLEALQPHLNVEELQICFYGGDIF-PKWLTSLTYLRELNLWFCFNCEHLPPLGKLPLEKLQLYILKS 482 (658)
Q Consensus 404 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lpL~~L~l~~~~~ 482 (658)
...+ +..+..+++|++|++++|..++.++.
T Consensus 159 ---------------------------------l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~---------------- 189 (452)
T 3zyi_A 159 ---------------------------------IESIPSYAFNRVPSLMRLDLGELKKLEYISE---------------- 189 (452)
T ss_dssp ---------------------------------CCEECTTTTTTCTTCCEEECCCCTTCCEECT----------------
T ss_pred ---------------------------------cceeCHhHHhcCCcccEEeCCCCCCccccCh----------------
Confidence 0001 23455678888888888765443332
Q ss_pred ceEeCccccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCc
Q 044750 483 VKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPD 562 (658)
Q Consensus 483 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~ 562 (658)
..+..+++|++|+++++ .++.+ ..+..+++|++|++++|......|.
T Consensus 190 -------------------------~~~~~l~~L~~L~L~~n-~l~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~ 236 (452)
T 3zyi_A 190 -------------------------GAFEGLFNLKYLNLGMC-NIKDM-------PNLTPLVGLEELEMSGNHFPEIRPG 236 (452)
T ss_dssp -------------------------TTTTTCTTCCEEECTTS-CCSSC-------CCCTTCTTCCEEECTTSCCSEECGG
T ss_pred -------------------------hhccCCCCCCEEECCCC-ccccc-------ccccccccccEEECcCCcCcccCcc
Confidence 01235666677776665 33322 2345667777777777654444456
Q ss_pred cccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCC-CCCCCCCccEEEEecCh
Q 044750 563 YLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPN-YLLRTTTLQELIIHRCP 631 (658)
Q Consensus 563 ~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~ 631 (658)
.+..+++|++|++++|......| ..+..+++|+.|++++|. ++.+|. .+..+++|+.|++++||
T Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 237 SFHGLSSLKKLWVMNSQVSLIER----NAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp GGTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cccCccCCCEEEeCCCcCceECH----HHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 66677777777777776544333 345667777777777774 444443 45567777777777665
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=3.9e-21 Score=210.90 Aligned_cols=403 Identities=15% Similarity=0.114 Sum_probs=227.4
Q ss_pred CCceEEEEEEcCCCCC-CCcccc-CCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccc
Q 044750 176 GDKVRHLGLNFEGGAP-LPMSIY-GLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPE 253 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~ 253 (658)
.+.++++.+.++.+.. .+..+. .+++|++|.+.+|.. +....++..+.++++|++|++++|. +.+ .....++.
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~-i~~---~~~~~l~~ 178 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG-FSTDGLAAIAATCRNLKELDLRESD-VDD---VSGHWLSH 178 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE-EEHHHHHHHHHHCTTCCEEECTTCE-EEC---CCGGGGGG
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC-CCHHHHHHHHHhCCCCCEEeCcCCc-cCC---cchHHHHH
Confidence 3467777777765542 122232 578888888887731 1111233445578888888885543 222 22223444
Q ss_pred cccCCCccceeecCCcc--cc--ccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCccc------CccCc
Q 044750 254 NIGKLIHLKYLNLSELC--IE--RLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYS------LKYMP 323 (658)
Q Consensus 254 ~~~~l~~L~~L~L~~~~--i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~------~~~~p 323 (658)
....+++|++|++++|. +. .++..+.++++|++|++++|..+..+|..+..+++|++|+++.+.. +..++
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 44567788888888876 32 3343445678888888888865666777778888888888765521 22233
Q ss_pred CcCCCCCCCCccCceeeccCCCCCcccccc-ccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCC
Q 044750 324 IGISKLTSLRTLEKFVVGGGVDGGSTCRLE-SLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDG 402 (658)
Q Consensus 324 ~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~-~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 402 (658)
..+.++++|+.|..+ .... ...+. -...+++|+.+.+.+.. +. .......+..+++|+.|++.++.
T Consensus 259 ~~l~~~~~L~~Ls~~--~~~~----~~~l~~~~~~~~~L~~L~L~~~~-l~--~~~l~~~~~~~~~L~~L~l~~~~---- 325 (594)
T 2p1m_B 259 VALSGCKELRCLSGF--WDAV----PAYLPAVYSVCSRLTTLNLSYAT-VQ--SYDLVKLLCQCPKLQRLWVLDYI---- 325 (594)
T ss_dssp HHHHTCTTCCEEECC--BTCC----GGGGGGGHHHHTTCCEEECTTCC-CC--HHHHHHHHTTCTTCCEEEEEGGG----
T ss_pred HHHhcCCCcccccCC--cccc----hhhHHHHHHhhCCCCEEEccCCC-CC--HHHHHHHHhcCCCcCEEeCcCcc----
Confidence 345667777766211 1111 11111 11244556666665543 22 12223335678889999998663
Q ss_pred CCcccccCchhHHHHhhhcCCCCCCceEEEeeeC------CCCCCh-----hhhcccccceEEeeCCCCCC-CCCCCC-C
Q 044750 403 EGEEGRRKNEKDKQLLEALQPHLNVEELQICFYG------GDIFPK-----WLTSLTYLRELNLWFCFNCE-HLPPLG-K 469 (658)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~------~~~~p~-----~~~~l~~L~~L~l~~~~~~~-~l~~~~-~ 469 (658)
....+......+++|+.|.+.++. ...+.. ....+++|++|.+..+.... .+..+. .
T Consensus 326 ----------~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~ 395 (594)
T 2p1m_B 326 ----------EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN 395 (594)
T ss_dssp ----------HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhh
Confidence 112222222336788999885531 111111 11257889999766554322 111122 3
Q ss_pred cc-ccceecc-----ccccceEeCccccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccC-c
Q 044750 470 LP-LEKLQLY-----ILKSVKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENIS-I 542 (658)
Q Consensus 470 lp-L~~L~l~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~-~ 542 (658)
+| |+.|.+. +|..++..... ..++..+..+++|++|++++ .+.+... ..+. .
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~--------------~~~~~l~~~~~~L~~L~L~~--~l~~~~~-----~~l~~~ 454 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLD--------------IGFGAIVEHCKDLRRLSLSG--LLTDKVF-----EYIGTY 454 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTH--------------HHHHHHHHHCTTCCEEECCS--SCCHHHH-----HHHHHH
T ss_pred CCCcceeEeecccCCCcccccCCchh--------------hHHHHHHhhCCCccEEeecC--cccHHHH-----HHHHHh
Confidence 67 8888887 33333211100 01111235789999999976 3433221 2222 4
Q ss_pred CcccceeeeeCCCCCCCCCcc-ccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCCCC-CCCC
Q 044750 543 MPRLSSLWIRGCPKLKALPDY-LLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPNYL-LRTT 620 (658)
Q Consensus 543 ~~~L~~L~L~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~ 620 (658)
+++|+.|++++|......+.. ...+++|++|+|++|+.....+. ..+..+++|+.|++++|+....-...+ ..+|
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp 531 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL---ANASKLETMRSLWMSSCSVSFGACKLLGQKMP 531 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHH---HTGGGGGGSSEEEEESSCCBHHHHHHHHHHCT
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHH---HHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCC
Confidence 899999999999643222222 25689999999999987322210 133568999999999998632222222 3567
Q ss_pred CccEEEEecC
Q 044750 621 TLQELIIHRC 630 (658)
Q Consensus 621 ~L~~L~l~~c 630 (658)
.|+...+...
T Consensus 532 ~l~i~~~~~~ 541 (594)
T 2p1m_B 532 KLNVEVIDER 541 (594)
T ss_dssp TEEEEEECSS
T ss_pred CCEEEEecCC
Confidence 7776666543
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=2.8e-18 Score=169.14 Aligned_cols=100 Identities=22% Similarity=0.256 Sum_probs=59.1
Q ss_pred CcccEEEEccccCCCCCCcccccccc-ccccCCCccceeecCCcccccc-chhhhcCCCCcEeecCCCCCCCCC-Ccccc
Q 044750 227 ACLRALVIRQLSSFSHPSPNFIREIP-ENIGKLIHLKYLNLSELCIERL-PETLCELYNLRKLDIRRCPNLREL-PAGIG 303 (658)
Q Consensus 227 ~~Lr~L~L~~~~~l~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~l-p~~i~ 303 (658)
+.|++|++ ++ +.+..++ ..+..+++|++|++++|.++.+ |..++++++|++|++++|..+..+ |..+.
T Consensus 32 ~~l~~L~l------~~---n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 32 AASQRIFL------HG---NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp TTCSEEEC------TT---SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCceEEEe------eC---CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 45666666 33 4444444 3466677777777777776654 556677777777777776534444 55666
Q ss_pred cccCCceeecCCcccCccCcCcCCCCCCCCcc
Q 044750 304 KLMNMRSLLNGQTYSLKYMPIGISKLTSLRTL 335 (658)
Q Consensus 304 ~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 335 (658)
.+++|++|++++|......|..+..+++|++|
T Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 77777777777764333223334444444443
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=4.3e-19 Score=177.63 Aligned_cols=110 Identities=10% Similarity=0.082 Sum_probs=73.1
Q ss_pred CCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCccc
Q 044750 512 AFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILEDRK 591 (658)
Q Consensus 512 ~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~ 591 (658)
.+++|++|+++++ .++.+. ....+++|++|++++| .+..+|..+..+++|++|++++|.. ..+| ..
T Consensus 167 ~l~~L~~L~L~~N-~l~~~~-------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~l-~~l~----~~ 232 (317)
T 3o53_A 167 SSDTLEHLNLQYN-FIYDVK-------GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKL-VLIE----KA 232 (317)
T ss_dssp GTTTCCEEECTTS-CCCEEE-------CCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCC-CEEC----TT
T ss_pred ccCcCCEEECCCC-cCcccc-------cccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCcc-cchh----hH
Confidence 4677777777776 333321 2224777888888877 4555666677778888888887753 3566 35
Q ss_pred cCCCCCCCeeeccCCCCc-cccCCCCCCCCCccEEEEecChhHHH
Q 044750 592 TTDIPRLSSLEIGYCPKL-KVLPNYLLRTTTLQELIIHRCPLLEN 635 (658)
Q Consensus 592 ~~~~~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~ 635 (658)
+..+++|+.|++++|+.. ..+|..+..+++|+.|++.+|+.++.
T Consensus 233 ~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 667778888888887755 35566666677777777776666553
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=4.3e-19 Score=177.59 Aligned_cols=90 Identities=19% Similarity=0.157 Sum_probs=66.7
Q ss_pred CCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCC-CCCcCCCcc
Q 044750 512 AFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLL-EELPILEDR 590 (658)
Q Consensus 512 ~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l-~~~p~l~~~ 590 (658)
.+++|++|+++++ .++.+ +..+..+++|+.|++++| .++.+|..+..+++|+.|++++|+.. ..+| .
T Consensus 189 ~l~~L~~L~Ls~N-~l~~l------~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~----~ 256 (317)
T 3o53_A 189 VFAKLKTLDLSSN-KLAFM------GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLR----D 256 (317)
T ss_dssp CCTTCCEEECCSS-CCCEE------CGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHH----H
T ss_pred ccccCCEEECCCC-cCCcc------hhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHH----H
Confidence 4778888888887 44432 334667888999999988 56678888888899999999998876 4444 4
Q ss_pred ccCCCCCCCeeeccCCCCccccC
Q 044750 591 KTTDIPRLSSLEIGYCPKLKVLP 613 (658)
Q Consensus 591 ~~~~~~~L~~L~l~~c~~l~~l~ 613 (658)
.+..+++|+.|++.+|+.++...
T Consensus 257 ~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 257 FFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp HHHTCHHHHHHHHHHHHHHHSSS
T ss_pred HHhccccceEEECCCchhccCCc
Confidence 56778888888888776665443
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=5.5e-17 Score=159.83 Aligned_cols=214 Identities=19% Similarity=0.155 Sum_probs=142.5
Q ss_pred cccccccccccCCCccceeecCCccccccch-hhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccC-c
Q 044750 246 NFIREIPENIGKLIHLKYLNLSELCIERLPE-TLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYM-P 323 (658)
Q Consensus 246 ~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~-p 323 (658)
..+..+|..+ .++|++|++++|.++.+|. .++++++|++|++++|......|..+..+++|++|++++|..+..+ |
T Consensus 21 ~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 21 QGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp SCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 5566777544 4688888888888887764 5788888888888888733344677888888888888888534443 3
Q ss_pred CcCCCCCCCCccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCC
Q 044750 324 IGISKLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGE 403 (658)
Q Consensus 324 ~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 403 (658)
..+..+++|++|+ ++++.
T Consensus 99 ~~~~~l~~L~~L~---------------------------------------------------------l~~n~----- 116 (285)
T 1ozn_A 99 ATFHGLGRLHTLH---------------------------------------------------------LDRCG----- 116 (285)
T ss_dssp TTTTTCTTCCEEE---------------------------------------------------------CTTSC-----
T ss_pred HHhcCCcCCCEEE---------------------------------------------------------CCCCc-----
Confidence 3344444444442 22211
Q ss_pred CcccccCchhHHHHhhhcCCCCCCceEEEeeeCCCC-CChhhhcccccceEEeeCCCCCCCCCCCCCccccceecccccc
Q 044750 404 GEEGRRKNEKDKQLLEALQPHLNVEELQICFYGGDI-FPKWLTSLTYLRELNLWFCFNCEHLPPLGKLPLEKLQLYILKS 482 (658)
Q Consensus 404 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lpL~~L~l~~~~~ 482 (658)
... .|..+..+++|++|++++|.... ++
T Consensus 117 ---------------------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~----------------- 145 (285)
T 1ozn_A 117 ---------------------------------LQELGPGLFRGLAALQYLYLQDNALQA-LP----------------- 145 (285)
T ss_dssp ---------------------------------CCCCCTTTTTTCTTCCEEECCSSCCCC-CC-----------------
T ss_pred ---------------------------------CCEECHhHhhCCcCCCEEECCCCcccc-cC-----------------
Confidence 001 14456667888888888885321 11
Q ss_pred ceEeCccccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCc
Q 044750 483 VKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPD 562 (658)
Q Consensus 483 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~ 562 (658)
+..+..+++|++|+++++ .++.+. +..+..+++|+.|++++|......|.
T Consensus 146 ------------------------~~~~~~l~~L~~L~l~~n-~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~ 195 (285)
T 1ozn_A 146 ------------------------DDTFRDLGNLTHLFLHGN-RISSVP-----ERAFRGLHSLDRLLLHQNRVAHVHPH 195 (285)
T ss_dssp ------------------------TTTTTTCTTCCEEECCSS-CCCEEC-----TTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred ------------------------HhHhccCCCccEEECCCC-cccccC-----HHHhcCccccCEEECCCCcccccCHh
Confidence 111346788899988887 344322 33466788899999998865455577
Q ss_pred cccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCC
Q 044750 563 YLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPK 608 (658)
Q Consensus 563 ~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~ 608 (658)
.+..+++|++|++++|.... +|. ..+..+++|+.|++++|+.
T Consensus 196 ~~~~l~~L~~L~l~~n~l~~-~~~---~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 196 AFRDLGRLMTLYLFANNLSA-LPT---EALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTTTCTTCCEEECCSSCCSC-CCH---HHHTTCTTCCEEECCSSCE
T ss_pred HccCcccccEeeCCCCcCCc-CCH---HHcccCcccCEEeccCCCc
Confidence 78888889999998886544 331 3467788888888888874
No 68
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=170.52 Aligned_cols=264 Identities=19% Similarity=0.130 Sum_probs=143.6
Q ss_pred EEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccc-cccccCCCc
Q 044750 182 LGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREI-PENIGKLIH 260 (658)
Q Consensus 182 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~l-p~~~~~l~~ 260 (658)
.+..++....+|..+. ++|+.|++++|... ...+..|.++++|++|++ ++ +.+..+ |..+.++++
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L------~~---n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRIT---YISNSDLQRCVNLQALVL------TS---NGINTIEEDSFSSLGS 101 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSCCC---EECTTTTTTCTTCCEEEC------TT---SCCCEECTTTTTTCTT
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCcCc---ccCHHHhccCCCCCEEEC------CC---CccCccCHhhcCCCCC
Confidence 3444455555555443 46777777777643 233345677777777777 33 444444 345667777
Q ss_pred cceeecCCccccccchh-hhcCCCCcEeecCCCCCCCCCCc--ccccccCCceeecCCcccCccC-cCcCCCCCCCCccC
Q 044750 261 LKYLNLSELCIERLPET-LCELYNLRKLDIRRCPNLRELPA--GIGKLMNMRSLLNGQTYSLKYM-PIGISKLTSLRTLE 336 (658)
Q Consensus 261 L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~ 336 (658)
|++|++++|.++.+|.. ++++++|++|++++|. +..+|. .+..+++|++|++++|..+..+ |..++.+++|++|+
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 77777777777766655 6677777777777776 556665 5667777777777776434444 34566677777765
Q ss_pred ceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCcccccCchhHHH
Q 044750 337 KFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGEEGRRKNEKDKQ 416 (658)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 416 (658)
+... ......+ ..+..+++|+.+.+....- .... ...+..+++|+.|+++++.+.......
T Consensus 181 l~~n--~l~~~~~---~~l~~l~~L~~L~l~~n~l-~~~~---~~~~~~~~~L~~L~L~~n~l~~~~~~~---------- 241 (353)
T 2z80_A 181 IDAS--DLQSYEP---KSLKSIQNVSHLILHMKQH-ILLL---EIFVDVTSSVECLELRDTDLDTFHFSE---------- 241 (353)
T ss_dssp EEET--TCCEECT---TTTTTCSEEEEEEEECSCS-TTHH---HHHHHHTTTEEEEEEESCBCTTCCCC-----------
T ss_pred CCCC--CcCccCH---HHHhccccCCeecCCCCcc-ccch---hhhhhhcccccEEECCCCccccccccc----------
Confidence 3322 1111111 2233344444444443221 1111 112334667777777776632211100
Q ss_pred HhhhcCCCCCCceEEEeeeCCC-----CCChhhhcccccceEEeeCCCCCCCCCC--CCCcc-ccceeccccc
Q 044750 417 LLEALQPHLNVEELQICFYGGD-----IFPKWLTSLTYLRELNLWFCFNCEHLPP--LGKLP-LEKLQLYILK 481 (658)
Q Consensus 417 ~~~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~~~l~~--~~~lp-L~~L~l~~~~ 481 (658)
.........++.+.+.+.... .+|.++..+++|++|++++|... .+|. ++.++ |+.|++.+++
T Consensus 242 -l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 242 -LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred -cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 001122344555555554332 24556667777777777777544 3433 35666 7777776654
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=6.7e-18 Score=178.90 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=60.4
Q ss_pred CcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccchhhh
Q 044750 200 NRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPETLC 279 (658)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~ 279 (658)
++|+.|++++|.+. ...+..|..+++|++|+| ++ +.+...++ ++.+++|++|+|++|.++.+|.
T Consensus 34 ~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L------s~---N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~--- 97 (487)
T 3oja_A 34 WNVKELDLSGNPLS---QISAADLAPFTKLELLNL------SS---NVLYETLD-LESLSTLRTLDLNNNYVQELLV--- 97 (487)
T ss_dssp GGCCEEECCSSCCC---CCCGGGGTTCTTCCEEEC------TT---SCCEEEEE-CTTCTTCCEEECCSSEEEEEEE---
T ss_pred CCccEEEeeCCcCC---CCCHHHHhCCCCCCEEEe------eC---CCCCCCcc-cccCCCCCEEEecCCcCCCCCC---
Confidence 36777777777643 344456677777777777 33 44444433 6667777777777777766553
Q ss_pred cCCCCcEeecCCCCCCCCCCcccccccCCceeecCCccc
Q 044750 280 ELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYS 318 (658)
Q Consensus 280 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~ 318 (658)
.++|++|++++|. +..+|.. .+++|+.|++++|..
T Consensus 98 -~~~L~~L~L~~N~-l~~~~~~--~l~~L~~L~L~~N~l 132 (487)
T 3oja_A 98 -GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKI 132 (487)
T ss_dssp -CTTCCEEECCSSC-CCCEEEC--CCSSCEEEECCSSCC
T ss_pred -CCCcCEEECcCCc-CCCCCcc--ccCCCCEEECCCCCC
Confidence 2667777777766 4444432 356677777766643
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=1.9e-15 Score=163.37 Aligned_cols=127 Identities=23% Similarity=0.176 Sum_probs=100.6
Q ss_pred CCceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccc
Q 044750 176 GDKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENI 255 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~ 255 (658)
+.+++.+.+.++.+..+|. .+++|++|++++|.+. .++. .+++|++|++ ++ +.+..+|.
T Consensus 60 ~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~----~lp~---~l~~L~~L~L------s~---N~l~~l~~-- 118 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT----SLPV---LPPGLLELSI------FS---NPLTHLPA-- 118 (622)
T ss_dssp CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS----CCCC---CCTTCCEEEE------CS---CCCCCCCC--
T ss_pred CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC----cCCC---CCCCCCEEEC------cC---CcCCCCCC--
Confidence 5789999999999887776 6799999999999753 2333 7899999999 55 66777876
Q ss_pred cCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCcc
Q 044750 256 GKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTL 335 (658)
Q Consensus 256 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 335 (658)
.+++|++|++++|.++.+|.. +++|++|++++|. +..+|.. +.+|+.|++++| .+..+| ..+++|+.|
T Consensus 119 -~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N-~l~~l~---~~~~~L~~L 186 (622)
T 3g06_A 119 -LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNN-QLTSLP---MLPSGLQEL 186 (622)
T ss_dssp -CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCC---CCCTTCCEE
T ss_pred -CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCCc---cCCCCEEECCCC-CCCCCc---ccCCCCcEE
Confidence 578999999999999999964 5899999999997 7777763 568899999988 444555 234455555
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=7.3e-18 Score=168.22 Aligned_cols=109 Identities=19% Similarity=0.197 Sum_probs=78.4
Q ss_pred cCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCC-ccccCCCCcceEEEccCCCCCCCcCCCc
Q 044750 511 TAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALP-DYLLQSTALQELRIYFCDLLEELPILED 589 (658)
Q Consensus 511 ~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~p~l~~ 589 (658)
..+++|++|+++++ .++.+.. .....+..+++|++|++++|......| ..+..+++|++|++++|... .+|.
T Consensus 198 ~~l~~L~~L~L~~N-~l~~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~--- 270 (312)
T 1wwl_A 198 LKFPTLQVLALRNA-GMETPSG--VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK--- 270 (312)
T ss_dssp TSCTTCCEEECTTS-CCCCHHH--HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS---
T ss_pred ccCCCCCEEECCCC-cCcchHH--HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh---
Confidence 46888999999887 3442211 001223467899999999985444443 34556889999999999754 6772
Q ss_pred cccCCCCCCCeeeccCCCCccccCCCCCCCCCccEEEEecCh
Q 044750 590 RKTTDIPRLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 590 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 631 (658)
.+. ++|++|++++|. ++.+|. +..+++|+.|++++|+
T Consensus 271 -~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 271 -GLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp -SCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred -hcc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 333 899999999995 667777 8889999999999886
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=2.4e-17 Score=174.58 Aligned_cols=102 Identities=10% Similarity=0.093 Sum_probs=53.8
Q ss_pred CCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCccc
Q 044750 512 AFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILEDRK 591 (658)
Q Consensus 512 ~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~ 591 (658)
.+++|++|+|++| .++.+ .....+++|+.|+|++| .+..+|..+..+++|+.|++++|... .+| ..
T Consensus 167 ~l~~L~~L~Ls~N-~l~~~-------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp----~~ 232 (487)
T 3oja_A 167 SSDTLEHLNLQYN-FIYDV-------KGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV-LIE----KA 232 (487)
T ss_dssp GTTTCCEEECTTS-CCCEE-------ECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCC-EEC----TT
T ss_pred hCCcccEEecCCC-ccccc-------cccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcCc-ccc----hh
Confidence 4556666666665 23222 11224666666666665 34445555666666666666666533 345 24
Q ss_pred cCCCCCCCeeeccCCCCc-cccCCCCCCCCCccEEEE
Q 044750 592 TTDIPRLSSLEIGYCPKL-KVLPNYLLRTTTLQELII 627 (658)
Q Consensus 592 ~~~~~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l 627 (658)
+..+++|+.|++++|+.. ..+|..+..++.|+.+++
T Consensus 233 l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 555666666666666543 234444444445544444
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=4.7e-16 Score=148.73 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=44.4
Q ss_pred cccccccccCCCccceeecCCccccccch-hhhcCCCCcEeecCCCCCCCCCCc-ccccccCCceeecCC
Q 044750 248 IREIPENIGKLIHLKYLNLSELCIERLPE-TLCELYNLRKLDIRRCPNLRELPA-GIGKLMNMRSLLNGQ 315 (658)
Q Consensus 248 ~~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~ 315 (658)
++.+|. +. .+|++|++++|.++.+|. .++++++|++|++++|..+..+|. .+..+++|++|++++
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence 455665 32 367788888887777665 577777888888877754555554 566777777777776
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=1.5e-15 Score=148.74 Aligned_cols=212 Identities=18% Similarity=0.208 Sum_probs=133.2
Q ss_pred cccccccccccCCCccceeecCCccccccch-hhhcCCCCcEeecCCCCCCCCCC-cccccccCCceeecCCcccCccCc
Q 044750 246 NFIREIPENIGKLIHLKYLNLSELCIERLPE-TLCELYNLRKLDIRRCPNLRELP-AGIGKLMNMRSLLNGQTYSLKYMP 323 (658)
Q Consensus 246 ~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~p 323 (658)
..+..+|..+. ++|++|++++|.++.++. .++++++|++|++++|. +..+| ..+..+++|++|++++|......|
T Consensus 17 ~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 17 LNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp SCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 44556666553 578888888888887765 77888888888888887 44444 467888888888888884433333
Q ss_pred CcCCCCCCCCccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCC
Q 044750 324 IGISKLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGE 403 (658)
Q Consensus 324 ~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 403 (658)
..+..+++|++|++ +.+.
T Consensus 94 ~~~~~l~~L~~L~l---------------------------------------------------------~~n~----- 111 (276)
T 2z62_A 94 GAFSGLSSLQKLVA---------------------------------------------------------VETN----- 111 (276)
T ss_dssp TTTTTCTTCCEEEC---------------------------------------------------------TTSC-----
T ss_pred hhhcCCccccEEEC---------------------------------------------------------CCCC-----
Confidence 44555555555421 1111
Q ss_pred CcccccCchhHHHHhhhcCCCCCCceEEEeeeCCCCC-ChhhhcccccceEEeeCCCCCCCCCCCCCccccceecccccc
Q 044750 404 GEEGRRKNEKDKQLLEALQPHLNVEELQICFYGGDIF-PKWLTSLTYLRELNLWFCFNCEHLPPLGKLPLEKLQLYILKS 482 (658)
Q Consensus 404 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lpL~~L~l~~~~~ 482 (658)
...+ +..+..+++|++|++++|.....
T Consensus 112 ---------------------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------- 139 (276)
T 2z62_A 112 ---------------------------------LASLENFPIGHLKTLKELNVAHNLIQSF------------------- 139 (276)
T ss_dssp ---------------------------------CCCSTTCCCTTCTTCCEEECCSSCCCCC-------------------
T ss_pred ---------------------------------ccccCchhcccCCCCCEEECcCCcccee-------------------
Confidence 0000 12345567888888888853210
Q ss_pred ceEeCccccCCCCCCCCCCCCCCCCCcccCCCCcceeeecCCccccccccccccccccCcCcccc----eeeeeCCCCCC
Q 044750 483 VKRVGNEFLGIEESSEDDPSSSSSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLS----SLWIRGCPKLK 558 (658)
Q Consensus 483 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~----~L~L~~c~~l~ 558 (658)
.+|..+..+++|++|+++++ .++.+. +..+..+++|+ .|++++| .+.
T Consensus 140 ----------------------~l~~~~~~l~~L~~L~Ls~N-~l~~~~-----~~~~~~l~~L~~l~l~L~ls~n-~l~ 190 (276)
T 2z62_A 140 ----------------------KLPEYFSNLTNLEHLDLSSN-KIQSIY-----CTDLRVLHQMPLLNLSLDLSLN-PMN 190 (276)
T ss_dssp ----------------------CCCGGGGGCTTCCEEECCSS-CCCEEC-----GGGGHHHHTCTTCCEEEECCSS-CCC
T ss_pred ----------------------cCchhhccCCCCCEEECCCC-CCCcCC-----HHHhhhhhhccccceeeecCCC-ccc
Confidence 11223457888899998887 343322 23444556666 7778877 445
Q ss_pred CCCccccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCC
Q 044750 559 ALPDYLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCP 607 (658)
Q Consensus 559 ~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~ 607 (658)
.+|.......+|++|++++|. ++.+|. ..+..+++|+.|++++|+
T Consensus 191 ~~~~~~~~~~~L~~L~L~~n~-l~~~~~---~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 191 FIQPGAFKEIRLKELALDTNQ-LKSVPD---GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EECTTSSCSCCEEEEECCSSC-CSCCCT---TTTTTCCSCCEEECCSSC
T ss_pred ccCccccCCCcccEEECCCCc-eeecCH---hHhcccccccEEEccCCc
Confidence 555555555678888888886 444552 345678888888888886
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=4.1e-15 Score=145.08 Aligned_cols=70 Identities=13% Similarity=-0.024 Sum_probs=41.6
Q ss_pred cCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCCCCCCC
Q 044750 540 ISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPNYLLRT 619 (658)
Q Consensus 540 ~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l 619 (658)
+..+++|++|++++|......|..+..+++|++|++++|+.. +.||+|+.|.+..|.....+|..+..+
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----------~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----------CTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-----------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-----------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence 345666666666666433333334566777777777777532 335567777777776556666665544
Q ss_pred C
Q 044750 620 T 620 (658)
Q Consensus 620 ~ 620 (658)
+
T Consensus 246 ~ 246 (272)
T 3rfs_A 246 A 246 (272)
T ss_dssp C
T ss_pred C
Confidence 3
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.62 E-value=2.8e-14 Score=139.02 Aligned_cols=87 Identities=23% Similarity=0.326 Sum_probs=59.2
Q ss_pred ccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCc-cccCCCCcceEEEccCCCCCCCcCCC
Q 044750 510 VTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPD-YLLQSTALQELRIYFCDLLEELPILE 588 (658)
Q Consensus 510 ~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~~p~l~ 588 (658)
+..+++|++|+++++ .++.+. +..+..+++|++|++++|. +..+|. .+..+++|++|++++|.. +.+|.
T Consensus 129 ~~~l~~L~~L~Ls~n-~l~~~~-----~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~-- 198 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYN-ELQSLP-----KGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQL-KRVPE-- 198 (270)
T ss_dssp TTTCTTCCEEECCSS-CCCCCC-----TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCC-SCCCT--
T ss_pred hCcCcCCCEEECCCC-cCCccC-----HhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCcC-CcCCH--
Confidence 346788888888887 343322 2345678888888888874 444543 467788888888888854 34442
Q ss_pred ccccCCCCCCCeeeccCCC
Q 044750 589 DRKTTDIPRLSSLEIGYCP 607 (658)
Q Consensus 589 ~~~~~~~~~L~~L~l~~c~ 607 (658)
..+..+++|+.|++++|+
T Consensus 199 -~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 199 -GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -TTTTTCTTCCEEECCSSC
T ss_pred -HHhccccCCCEEEecCCC
Confidence 345677888888888886
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=3.2e-17 Score=163.58 Aligned_cols=238 Identities=17% Similarity=0.148 Sum_probs=151.2
Q ss_pred EEcCCCCCCCccccCCCcceEEEeecCCCCccccccccccc-------CCCcccEEEEccccCCCCCCccccc-cccccc
Q 044750 184 LNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFS-------KLACLRALVIRQLSSFSHPSPNFIR-EIPENI 255 (658)
Q Consensus 184 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~l~~Lr~L~L~~~~~l~~~~~~~~~-~lp~~~ 255 (658)
+.++.+ .+|..+... |+.|++.+|.... ...+..+. ++++|++|+++ + +.+. .+|..+
T Consensus 50 l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~--~~~~~~~~~~~~~~~~l~~L~~L~L~------~---n~l~~~~~~~~ 115 (312)
T 1wwl_A 50 KRVDTE-ADLGQFTDI--IKSLSLKRLTVRA--ARIPSRILFGALRVLGISGLQELTLE------N---LEVTGTAPPPL 115 (312)
T ss_dssp HHCCTT-CCCHHHHHH--HHHCCCCEEEEEE--EECBHHHHHHHHHHHTTSCCCEEEEE------E---EBCBSCCCCCS
T ss_pred eccccc-ccHHHHHHH--HhhcccccccccC--CCcCHHHHHHHHHhcCcCCccEEEcc------C---CcccchhHHHH
Confidence 344444 345544433 7777777775321 22233333 68889999993 3 3333 567765
Q ss_pred --cCCCccceeecCCccccccchhhhcC-----CCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCcc--CcCcC
Q 044750 256 --GKLIHLKYLNLSELCIERLPETLCEL-----YNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKY--MPIGI 326 (658)
Q Consensus 256 --~~l~~L~~L~L~~~~i~~lp~~i~~L-----~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~--~p~~i 326 (658)
+.+++|++|++++|.++.+|..++.+ ++|++|++++|......|..++.+++|++|++++|..... +|..+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 78888999999999888778888877 8899999998884444447788889999999988864433 23333
Q ss_pred --CCCCCCCccCceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCC
Q 044750 327 --SKLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEG 404 (658)
Q Consensus 327 --~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 404 (658)
+.+++|++|++. ++.. ..........+..+++|+.|+++++.+.....
T Consensus 196 ~~~~l~~L~~L~L~--~N~l----------------------------~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 196 CPLKFPTLQVLALR--NAGM----------------------------ETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp CTTSCTTCCEEECT--TSCC----------------------------CCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred HhccCCCCCEEECC--CCcC----------------------------cchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 667777776421 1110 11111111223345677777777665322110
Q ss_pred cccccCchhHHHHhhhcCCCCCCceEEEeeeCCCCCChhhhcccccceEEeeCCCCCCCCCCCCCcc-ccceeccccc
Q 044750 405 EEGRRKNEKDKQLLEALQPHLNVEELQICFYGGDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLP-LEKLQLYILK 481 (658)
Q Consensus 405 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lp-L~~L~l~~~~ 481 (658)
...+...++|+.|+++++....+|.++. ++|++|++++|...+ +|.+..++ |+.|++.+++
T Consensus 246 -------------~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~-~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 246 -------------APSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDR-NPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp -------------CSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCS-CCCTTTSCEEEEEECTTCT
T ss_pred -------------hhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCC-ChhHhhCCCCCEEeccCCC
Confidence 0112235678888888887777787765 889999999996543 46677888 8888887643
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=1.3e-14 Score=142.57 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=22.3
Q ss_pred CcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCC
Q 044750 541 SIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDL 580 (658)
Q Consensus 541 ~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 580 (658)
..+++|+.|++++| .++.+|..+..+++|+.|++++|+.
T Consensus 169 ~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 169 NGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred cCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCCc
Confidence 34555666666555 3445555555556666666666553
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=1.9e-15 Score=147.97 Aligned_cols=124 Identities=24% Similarity=0.214 Sum_probs=65.1
Q ss_pred CcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccc-cccCCCccceeecCCccccccc-hh
Q 044750 200 NRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPE-NIGKLIHLKYLNLSELCIERLP-ET 277 (658)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~i~~lp-~~ 277 (658)
++|+.|++++|... ...+..|.++++|++|++ ++ +.+..++. .+..+++|++|++++|.++.++ ..
T Consensus 28 ~~l~~L~ls~n~l~---~~~~~~~~~l~~L~~L~l------~~---n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 28 FSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDL------SR---CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp TTCCEEECTTCCCC---EECTTTTTTCTTCSEEEC------TT---CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CCccEEECCCCccc---ccCHhHhccccCCcEEEC------CC---CcCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 35666666665532 222334555666666666 32 33344432 4555666666666666665444 34
Q ss_pred hhcCCCCcEeecCCCCCCCCCC-cccccccCCceeecCCcccCc-cCcCcCCCCCCCCccC
Q 044750 278 LCELYNLRKLDIRRCPNLRELP-AGIGKLMNMRSLLNGQTYSLK-YMPIGISKLTSLRTLE 336 (658)
Q Consensus 278 i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~ 336 (658)
+.++++|++|++++|. +..++ ..+..+++|++|++++|.... .+|..++.+++|++|+
T Consensus 96 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 96 FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp TTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred hcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence 5566666666666655 33332 245566666666666653322 1355555555555554
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=8.3e-15 Score=140.00 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=56.2
Q ss_pred cccEEEEccccCCCCCCccccccccc-cccCCCccceeecCCcc-ccccch-hhhcCCCCcEeecCC-CCCCCCCC-ccc
Q 044750 228 CLRALVIRQLSSFSHPSPNFIREIPE-NIGKLIHLKYLNLSELC-IERLPE-TLCELYNLRKLDIRR-CPNLRELP-AGI 302 (658)
Q Consensus 228 ~Lr~L~L~~~~~l~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~-i~~lp~-~i~~L~~L~~L~L~~-~~~~~~lp-~~i 302 (658)
.|++|++ ++ +.+..+|. .+..+++|++|++++|. ++.+|. .++++++|++|++++ |. +..+| ..+
T Consensus 32 ~l~~L~l------~~---n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f 101 (239)
T 2xwt_C 32 STQTLKL------IE---THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDAL 101 (239)
T ss_dssp TCCEEEE------ES---CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSE
T ss_pred cccEEEE------eC---CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHh
Confidence 6777777 43 55566654 56777888888888886 776665 567788888888887 44 55555 456
Q ss_pred ccccCCceeecCCc
Q 044750 303 GKLMNMRSLLNGQT 316 (658)
Q Consensus 303 ~~L~~L~~L~l~~~ 316 (658)
..+++|++|++++|
T Consensus 102 ~~l~~L~~L~l~~n 115 (239)
T 2xwt_C 102 KELPLLKFLGIFNT 115 (239)
T ss_dssp ECCTTCCEEEEEEE
T ss_pred CCCCCCCEEeCCCC
Confidence 77888888888777
No 81
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=1.1e-14 Score=147.75 Aligned_cols=80 Identities=23% Similarity=0.235 Sum_probs=45.5
Q ss_pred cCcccceeeeeCCCCCCCCCcc-ccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCCCCCCCC
Q 044750 542 IMPRLSSLWIRGCPKLKALPDY-LLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPNYLLRTT 620 (658)
Q Consensus 542 ~~~~L~~L~L~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~ 620 (658)
..++|++|.+.+|+.++.+|.. +..+++|++|++++|. ++.+|. ..+.+|+.|.+.+|..++.+|. +..++
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~------~~~~~L~~L~~l~~~~l~~lP~-l~~l~ 246 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS------YGLENLKKLRARSTYNLKKLPT-LEKLV 246 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS------SSCTTCCEEECTTCTTCCCCCC-TTTCC
T ss_pred cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh------hhhccchHhhhccCCCcCcCCC-chhCc
Confidence 4455666666655566666543 3556666666666663 444441 2355566666666666666664 55566
Q ss_pred CccEEEEec
Q 044750 621 TLQELIIHR 629 (658)
Q Consensus 621 ~L~~L~l~~ 629 (658)
+|+.+++.+
T Consensus 247 ~L~~l~l~~ 255 (350)
T 4ay9_X 247 ALMEASLTY 255 (350)
T ss_dssp SCCEEECSC
T ss_pred ChhhCcCCC
Confidence 666666643
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=2.6e-16 Score=159.09 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=50.3
Q ss_pred CcccEEEEccccCCCCCCccccccccccccCCCccceeecCCcccc-c-cchhhhcCCCCcEeecCCCCCCCCCCccccc
Q 044750 227 ACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIE-R-LPETLCELYNLRKLDIRRCPNLRELPAGIGK 304 (658)
Q Consensus 227 ~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~-~-lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 304 (658)
+.+++|++ .+ +.+...+..+..+++|++|++++|.++ . +|..+..+++|++|++++|......|..++.
T Consensus 70 ~~l~~L~l------~~---n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 70 QGVIAFRC------PR---SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp TTCSEEEC------TT---CEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred ccceEEEc------CC---ccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 56666666 33 444444444556677777777777665 2 6666666777777777776533355566666
Q ss_pred ccCCceeecCCc
Q 044750 305 LMNMRSLLNGQT 316 (658)
Q Consensus 305 L~~L~~L~l~~~ 316 (658)
+++|++|++++|
T Consensus 141 ~~~L~~L~L~~~ 152 (336)
T 2ast_B 141 NSNLVRLNLSGC 152 (336)
T ss_dssp CTTCSEEECTTC
T ss_pred CCCCCEEECCCC
Confidence 677777777666
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.57 E-value=3.6e-14 Score=139.40 Aligned_cols=141 Identities=20% Similarity=0.202 Sum_probs=77.3
Q ss_pred ceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccC
Q 044750 178 KVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGK 257 (658)
Q Consensus 178 ~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~ 257 (658)
.++.+.+..+.+..+|..+. ++++.|++++|.+. ...+..|..+++|++|++ ++ +.+..++.. +.
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L------~~---n~l~~~~~~-~~ 75 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLY---TFSLATLMPYTRLTQLNL------DR---AELTKLQVD-GT 75 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCS---EEEGGGGTTCTTCCEEEC------TT---SCCCEEECC-SC
T ss_pred CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCC---ccCHHHhhcCCCCCEEEC------CC---CccCcccCC-CC
Confidence 44555555555555554442 46666666666543 233445566666666666 33 444444443 55
Q ss_pred CCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCC-cccccccCCceeecCCcccCccCcCc-CCCCCCCCcc
Q 044750 258 LIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELP-AGIGKLMNMRSLLNGQTYSLKYMPIG-ISKLTSLRTL 335 (658)
Q Consensus 258 l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L 335 (658)
+++|++|++++|.++.+|..+..+++|++|++++|. +..+| ..+..+++|++|++++|. +..+|.. +..+++|+.|
T Consensus 76 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEE
Confidence 666666666666666666666666666666666665 44443 345566666666666663 2333322 3445555544
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=3.4e-16 Score=158.30 Aligned_cols=98 Identities=10% Similarity=0.106 Sum_probs=68.1
Q ss_pred cccEEEEccccCCCCCCccccccccccccCC--CccceeecCCccccccchhhhcCCCCcEeecCCCCCCCC-CCccccc
Q 044750 228 CLRALVIRQLSSFSHPSPNFIREIPENIGKL--IHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRE-LPAGIGK 304 (658)
Q Consensus 228 ~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l--~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~-lp~~i~~ 304 (658)
.++.+++ ++ +.+. +..+..+ +++++|++++|.+...+..+.++++|++|++++|..... +|..+..
T Consensus 48 ~~~~l~l------~~---~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~ 116 (336)
T 2ast_B 48 LWQTLDL------TG---KNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ 116 (336)
T ss_dssp TSSEEEC------TT---CBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTT
T ss_pred hheeecc------cc---ccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhh
Confidence 4677777 32 2222 4445666 788999999988887766777889999999998873323 7777888
Q ss_pred ccCCceeecCCcccCccCcCcCCCCCCCCccC
Q 044750 305 LMNMRSLLNGQTYSLKYMPIGISKLTSLRTLE 336 (658)
Q Consensus 305 L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 336 (658)
+++|++|++++|......|..++.+++|++|+
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 88999999988854444454555555555553
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=6.2e-14 Score=142.07 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=53.1
Q ss_pred cccccccccccCCCccceeecCCccccccch-hhhcCCCCcEeecCCCCCCCCCCc-ccccccCCceeecCCcccCccC-
Q 044750 246 NFIREIPENIGKLIHLKYLNLSELCIERLPE-TLCELYNLRKLDIRRCPNLRELPA-GIGKLMNMRSLLNGQTYSLKYM- 322 (658)
Q Consensus 246 ~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~- 322 (658)
+.++++|..+ .+++++|+|++|.|+.+|. .|+++++|++|+|++|...+.+|. .+.++++|+.+...++..+..+
T Consensus 19 ~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 19 SKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp TTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 4556666655 2567777777777777765 467777777777777765555554 3456666665433333244444
Q ss_pred cCcCCCCCCCCccC
Q 044750 323 PIGISKLTSLRTLE 336 (658)
Q Consensus 323 p~~i~~l~~L~~L~ 336 (658)
|..+..+++|+.|+
T Consensus 97 ~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 97 PEAFQNLPNLQYLL 110 (350)
T ss_dssp TTSBCCCTTCCEEE
T ss_pred chhhhhcccccccc
Confidence 33455566666654
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=8.6e-17 Score=165.87 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=71.5
Q ss_pred ccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCC----CCcccc--CCCCcceEEEccCCCCC-
Q 044750 510 VTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKA----LPDYLL--QSTALQELRIYFCDLLE- 582 (658)
Q Consensus 510 ~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~----lp~~~~--~l~~L~~L~l~~c~~l~- 582 (658)
+..+++|++|+|++|. +++.. ....+..+..+++|++|+|++|..... +|..+. .+++|++|+|++|....
T Consensus 212 l~~~~~L~~L~Ls~n~-l~~~g-~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~ 289 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNT-FTHLG-SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289 (386)
T ss_dssp GGGCTTCCEEECCSSC-CHHHH-HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred hhcCCCccEEECcCCC-CCcHH-HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence 4478899999998873 32210 012244566788999999998853322 355553 38889999999887654
Q ss_pred ---CCcCCCcccc-CCCCCCCeeeccCCCCccccC--CCC-CCCCCccEEEEecC
Q 044750 583 ---ELPILEDRKT-TDIPRLSSLEIGYCPKLKVLP--NYL-LRTTTLQELIIHRC 630 (658)
Q Consensus 583 ---~~p~l~~~~~-~~~~~L~~L~l~~c~~l~~l~--~~~-~~l~~L~~L~l~~c 630 (658)
.+| ..+ .++++|+.|++++|+.-...+ ..+ ..+++++.+++...
T Consensus 290 g~~~l~----~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 290 AVRTLK----TVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHH----HHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred HHHHHH----HHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 255 233 557899999999987443332 111 12455555555544
No 87
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.56 E-value=4.2e-15 Score=177.43 Aligned_cols=137 Identities=20% Similarity=0.250 Sum_probs=111.2
Q ss_pred hhhHHHHHHhhCC-HHHHHHHHhhhcCCCCHHHHHHHHhccccc----ccc----ccCcchHHHHhhccCCCCCCchhhH
Q 044750 3 HAIVSSLLDQLKS-IAQDQVIGNLLRSKCTVKEWQRILESEMWK----VEE----IRKGLLAPLLLSYNDLPSNSMVKQC 73 (658)
Q Consensus 3 ~~~~~~i~~~c~g-Plai~~ig~~L~~~~~~~~W~~~~~~~~~~----~~~----~~~~i~~~L~~sY~~L~~~~~~k~c 73 (658)
.+++.+|+++|+| ||||+++|+.|+.+. ..|+..++.+... +.. ..+.+..++++||+.|++ ++|.|
T Consensus 307 ~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~--~~~~~ 382 (1249)
T 3sfz_A 307 PAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDY 382 (1249)
T ss_dssp CTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT--TTHHH
T ss_pred cHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH--HHHHH
Confidence 3679999999999 999999999999873 4688766532211 111 113588999999999999 89999
Q ss_pred HhhhcCCCCCceeCHHHHHHHHHHcCCcCCCcchhHHHHHHHHHHHHHhccCceeeeecCCCCeeceEEcCHHHHHHHHH
Q 044750 74 FSYCAVFPKDHYMHKKELIDMWMAQGYLNAEEDEEMEMVGEEYFNILATHSFFQEFETYGGDNEFMRCKMHDIVHDFAQF 153 (658)
Q Consensus 74 Fl~~~~fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~mhdl~~d~~~~ 153 (658)
|+|||+||+++.|+++.++.+|.++ ++.++.++++|++++|++.... +... +|+|||++|++++.
T Consensus 383 ~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~~sl~~~~~~---~~~~-~~~~h~l~~~~~~~ 447 (1249)
T 3sfz_A 383 YTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVNKSLLFCNRN---GKSF-CYYLHDLQVDFLTE 447 (1249)
T ss_dssp HHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSCEEEES---SSSE-EEECCHHHHHHHHH
T ss_pred HHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHHHhccceEEecC---CCce-EEEecHHHHHHHHh
Confidence 9999999999999999999999554 3668899999999999986542 3333 59999999999998
Q ss_pred hhccc
Q 044750 154 VSRKE 158 (658)
Q Consensus 154 ~~~~~ 158 (658)
.+.++
T Consensus 448 ~~~~~ 452 (1249)
T 3sfz_A 448 KNRSQ 452 (1249)
T ss_dssp HTGGG
T ss_pred hhhHH
Confidence 87665
No 88
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.55 E-value=3.7e-15 Score=162.86 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=95.3
Q ss_pred hCC-HHHHHHHHhhhcCCC-CHHHHHHHHhccccccccccCcchHHHHhhccCCCCCCch-hhHHhhhcCCCCCceeCHH
Q 044750 13 LKS-IAQDQVIGNLLRSKC-TVKEWQRILESEMWKVEEIRKGLLAPLLLSYNDLPSNSMV-KQCFSYCAVFPKDHYMHKK 89 (658)
Q Consensus 13 c~g-Plai~~ig~~L~~~~-~~~~W~~~~~~~~~~~~~~~~~i~~~L~~sY~~L~~~~~~-k~cFl~~~~fp~~~~i~~~ 89 (658)
|+| ||||+++|+.|+++. +.++|+.. ....+..+|++||+.|++ ++ |.||+|||+||+++.|+++
T Consensus 323 CgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I~aaLelSYd~Lp~--eelK~cFL~LAIFPed~~I~~e 390 (1221)
T 1vt4_I 323 LTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTI 390 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHHHHHHHHHHHHSCT--THHHHHHHHTTSSCTTSCEEHH
T ss_pred hCCCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHHHHHHHHHHHhCCH--HHHHHHHHHHhCCCCCCCCCHH
Confidence 999 999999999999873 68899864 124589999999999999 78 9999999999999999999
Q ss_pred HHHHHHHHcCCcCCCcchhHHHHHHHHHHHHHhccCceeeeecCCCCeeceEEcCHHHHHHH
Q 044750 90 ELIDMWMAQGYLNAEEDEEMEMVGEEYFNILATHSFFQEFETYGGDNEFMRCKMHDIVHDFA 151 (658)
Q Consensus 90 ~Li~~w~~~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~mhdl~~d~~ 151 (658)
.++.+|+++| ++.++.++++|+++||++.... .. +|+|||++++++
T Consensus 391 lLa~LW~aeG----------eedAe~~L~eLvdRSLLq~d~~-----~~-rYrMHDLllELr 436 (1221)
T 1vt4_I 391 LLSLIWFDVI----------KSDVMVVVNKLHKYSLVEKQPK-----ES-TISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHCSSC----------SHHHHHHHHHHHTSSSSSBCSS-----SS-EEBCCCHHHHHH
T ss_pred HHHHHhcCCC----------HHHHHHHHHHHHhhCCEEEeCC-----CC-EEEehHHHHHHh
Confidence 9999999887 1348889999999999997311 11 699999999865
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=1.2e-14 Score=144.49 Aligned_cols=121 Identities=19% Similarity=0.308 Sum_probs=89.4
Q ss_pred ccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccc
Q 044750 196 IYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLP 275 (658)
Q Consensus 196 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp 275 (658)
..++++|+.|.+.++... .++ .+..+++|++|++ ++ +.+..++. +..+++|++|++++|.++.+|
T Consensus 37 ~~~l~~L~~L~l~~~~i~----~l~-~~~~l~~L~~L~L------~~---n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~ 101 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT----TIE-GVQYLNNLIGLEL------KD---NQITDLAP-LKNLTKITELELSGNPLKNVS 101 (308)
T ss_dssp HHHHHTCCEEECTTSCCC----CCT-TGGGCTTCCEEEC------CS---SCCCCCGG-GTTCCSCCEEECCSCCCSCCG
T ss_pred HHHcCCcCEEEeeCCCcc----Cch-hhhccCCCCEEEc------cC---CcCCCChh-HccCCCCCEEEccCCcCCCch
Confidence 446788888888888643 222 4778888888888 44 56666666 888888888888888888876
Q ss_pred hhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccC
Q 044750 276 ETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLE 336 (658)
Q Consensus 276 ~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 336 (658)
.++.+++|++|++++|. +..+|. +..+++|++|++++|. +..++. ++.+++|+.|+
T Consensus 102 -~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~ 157 (308)
T 1h6u_A 102 -AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLS 157 (308)
T ss_dssp -GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEE
T ss_pred -hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEE
Confidence 68888888888888887 666665 7888888888888883 444443 55566666654
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=3.5e-14 Score=138.33 Aligned_cols=142 Identities=25% Similarity=0.320 Sum_probs=83.1
Q ss_pred EEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccccc-ccCC
Q 044750 180 RHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPEN-IGKL 258 (658)
Q Consensus 180 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~-~~~l 258 (658)
+.+.+.++.+..+|..+. ++++.|++++|... ...+..|.++++|++|++ ++ +.+..+|.. +..+
T Consensus 19 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l------~~---n~l~~i~~~~~~~l 84 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLS---SLPSKAFHRLTKLRLLYL------ND---NKLQTLPAGIFKEL 84 (270)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCS---CCCTTSSSSCTTCCEEEC------CS---SCCSCCCTTTTSSC
T ss_pred CEEEccCCCCCccCCCCC--CCCCEEECcCCCCC---eeCHHHhcCCCCCCEEEC------CC---CccCeeChhhhcCC
Confidence 345555555555554433 46677777766543 333345666777777777 33 445555544 3566
Q ss_pred CccceeecCCccccccch-hhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCc-CCCCCCCCccC
Q 044750 259 IHLKYLNLSELCIERLPE-TLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIG-ISKLTSLRTLE 336 (658)
Q Consensus 259 ~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~ 336 (658)
++|++|++++|.++.+|. .+.++++|++|++++|......|..+..+++|++|++++|. +..+|.. ++.+++|+.|+
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELR 163 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeE
Confidence 777777777777666554 34667777777777766322333345667777777777763 3344433 56666666664
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.53 E-value=1.7e-13 Score=136.09 Aligned_cols=189 Identities=22% Similarity=0.248 Sum_probs=136.6
Q ss_pred CCceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccc
Q 044750 176 GDKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENI 255 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~ 255 (658)
...++.+.+.++.+..++ .+..+++|+.|++++|... ..+. +..+++|++|++ ++ +.+..++ .+
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~----~~~~-~~~l~~L~~L~L------~~---n~l~~~~-~~ 103 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT----DLAP-LKNLTKITELEL------SG---NPLKNVS-AI 103 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC----CCGG-GTTCCSCCEEEC------CS---CCCSCCG-GG
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC----CChh-HccCCCCCEEEc------cC---CcCCCch-hh
Confidence 456888999988887665 6788999999999999753 2233 899999999999 44 5566665 68
Q ss_pred cCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCcc
Q 044750 256 GKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTL 335 (658)
Q Consensus 256 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 335 (658)
..+++|++|++++|.++.+|. ++.+++|++|++++|. +..+|. +..+++|++|++++| .+..++. +..+++|+.|
T Consensus 104 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTL 178 (308)
T ss_dssp TTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEE
T ss_pred cCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCCCCCEE
Confidence 899999999999999998875 8999999999999998 677766 889999999999999 4555555 7888888888
Q ss_pred CceeeccCCCCCccccccccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecC
Q 044750 336 EKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDG 398 (658)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 398 (658)
++... .. .. +..+..+++|+.+.+.+..- .... .+..+++|+.|+++++.
T Consensus 179 ~l~~n--~l-~~----~~~l~~l~~L~~L~L~~N~l-~~~~-----~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 179 KADDN--KI-SD----ISPLASLPNLIEVHLKNNQI-SDVS-----PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp ECCSS--CC-CC----CGGGGGCTTCCEEECTTSCC-CBCG-----GGTTCTTCCEEEEEEEE
T ss_pred ECCCC--cc-Cc----ChhhcCCCCCCEEEccCCcc-Cccc-----cccCCCCCCEEEccCCe
Confidence 64322 11 11 11244455555555544211 1111 14556666666666655
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=2.7e-13 Score=125.05 Aligned_cols=144 Identities=17% Similarity=0.157 Sum_probs=117.6
Q ss_pred CCceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccc-ccccc
Q 044750 176 GDKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIR-EIPEN 254 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~-~lp~~ 254 (658)
...++.+.+.++.+..++ .+..+++|+.|++++|... . ...+..+++|++|++ ++ +.+. ..|..
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~----~-~~~l~~l~~L~~L~l------~~---n~l~~~~~~~ 107 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT----N-YNPISGLSNLERLRI------MG---KDVTSDKIPN 107 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS----C-CGGGTTCTTCCEEEE------EC---TTCBGGGSCC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC----c-chhhhcCCCCCEEEe------EC---CccCcccChh
Confidence 456889999999888767 6889999999999999532 2 346888999999999 33 4444 36778
Q ss_pred ccCCCccceeecCCcccc-ccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCC
Q 044750 255 IGKLIHLKYLNLSELCIE-RLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLR 333 (658)
Q Consensus 255 ~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 333 (658)
++.+++|++|++++|.++ ..|..++.+++|++|++++|..+..+| .+..+++|++|++++|. +..++ .+..+++|+
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~ 184 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLN 184 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCC
T ss_pred hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCC
Confidence 899999999999999998 477889999999999999997677777 68999999999999994 55555 677888888
Q ss_pred ccCc
Q 044750 334 TLEK 337 (658)
Q Consensus 334 ~L~~ 337 (658)
.|++
T Consensus 185 ~L~l 188 (197)
T 4ezg_A 185 QLYA 188 (197)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8753
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=1.3e-15 Score=156.96 Aligned_cols=259 Identities=14% Similarity=0.097 Sum_probs=140.0
Q ss_pred CCccccCCCcceEEEeecCCCCcc-cccccccccCCCcccEEEEccccC--CCCCCccccccccccccCCCccceeecCC
Q 044750 192 LPMSIYGLNRLRTLLIYDKGPSLR-SSILPGLFSKLACLRALVIRQLSS--FSHPSPNFIREIPENIGKLIHLKYLNLSE 268 (658)
Q Consensus 192 ~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~--l~~~~~~~~~~lp~~~~~l~~L~~L~L~~ 268 (658)
++..+..+++|+.|++++|.+... ...+...+..+++|++|+|++|.. +.+.....+..+...+..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 556667788899999988864310 011223466788899999854311 11000011122223347888899999999
Q ss_pred ccccc-----cchhhhcCCCCcEeecCCCCCCC----CCCcccccc---------cCCceeecCCcccC-ccCc---CcC
Q 044750 269 LCIER-----LPETLCELYNLRKLDIRRCPNLR----ELPAGIGKL---------MNMRSLLNGQTYSL-KYMP---IGI 326 (658)
Q Consensus 269 ~~i~~-----lp~~i~~L~~L~~L~L~~~~~~~----~lp~~i~~L---------~~L~~L~l~~~~~~-~~~p---~~i 326 (658)
|.++. +|..+.++++|++|+|++|.... .++..+..+ ++|++|++++|... ..+| ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 88875 77788888999999999887322 233334444 88999999888543 2333 245
Q ss_pred CCCCCCCccCceeeccCCCCCcccccc-ccccCcccCCceecCccCCCChhhHhhcccCcccCCCceEEEecCccCCCCc
Q 044750 327 SKLTSLRTLEKFVVGGGVDGGSTCRLE-SLKNLQLLRKCGIEGLSNVSHLDEAERIGLHNMENLLRLHLVFDGVVDGEGE 405 (658)
Q Consensus 327 ~~l~~L~~L~~~~~~~~~~~~~~~~~~-~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 405 (658)
..+++|++|++..+..... .....+. .+..+++|+.+.+.+..-...........+..+++|+.|++++|.+..
T Consensus 184 ~~~~~L~~L~L~~n~l~~~-g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~---- 258 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPE-GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA---- 258 (386)
T ss_dssp HHCTTCCEEECCSSCCCHH-HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH----
T ss_pred HhCCCcCEEECcCCCCCHh-HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch----
Confidence 5666777775322211100 0000111 334444555555443211000012223345566677777776655210
Q ss_pred ccccCchhHHHHhhhcC--CCCCCceEEEeeeCCCC-----CChhh-hcccccceEEeeCCCCC
Q 044750 406 EGRRKNEKDKQLLEALQ--PHLNVEELQICFYGGDI-----FPKWL-TSLTYLRELNLWFCFNC 461 (658)
Q Consensus 406 ~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~-----~p~~~-~~l~~L~~L~l~~~~~~ 461 (658)
.....++..+. ..++|+.|.+.++.... +|..+ ..+++|++|++++|...
T Consensus 259 ------~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 259 ------RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp ------HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred ------hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 01122333332 25666677766665544 45555 34667777777766543
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.46 E-value=7.2e-13 Score=129.10 Aligned_cols=173 Identities=20% Similarity=0.163 Sum_probs=100.0
Q ss_pred CCceEEEeeeCCCCCChhhhcccccceEEeeCCCCCCCCCCCCCcc-ccceeccccccceEeCccccCCCCCCCCCCCCC
Q 044750 426 NVEELQICFYGGDIFPKWLTSLTYLRELNLWFCFNCEHLPPLGKLP-LEKLQLYILKSVKRVGNEFLGIEESSEDDPSSS 504 (658)
Q Consensus 426 ~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~~~~lp-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 504 (658)
+++.|.+.++....++ .+..+++|++|++++|... .++.++.++ |++|.+.++.-- +
T Consensus 42 ~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~l~--------~------------ 99 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQ--------S------------ 99 (272)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC-CCGGGTTCTTCCEEECTTSCCC--------C------------
T ss_pred ceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC-CchhhcCCCCCCEEECCCCccC--------c------------
Confidence 3444444444443333 3556677777777766532 344555666 666666654311 1
Q ss_pred CCCCcccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCc-cccCCCCcceEEEccCCCCCC
Q 044750 505 SSSSSVTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPD-YLLQSTALQELRIYFCDLLEE 583 (658)
Q Consensus 505 ~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~ 583 (658)
..+..+..+++|++|+++++ .++.+ .+..+..+++|++|++++| .++.+|. .+..+++|++|++++|... .
T Consensus 100 ~~~~~~~~l~~L~~L~L~~n-~l~~~-----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~ 171 (272)
T 3rfs_A 100 LPNGVFDKLTNLKELVLVEN-QLQSL-----PDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQ-S 171 (272)
T ss_dssp CCTTTTTTCTTCCEEECTTS-CCCCC-----CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred cChhHhcCCcCCCEEECCCC-cCCcc-----CHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcC-c
Confidence 00112346777777777776 33322 1334566777888888777 3444443 3567777888888777543 3
Q ss_pred CcCCCccccCCCCCCCeeeccCCCCccccCCCCCCCCCccEEEEecCh
Q 044750 584 LPILEDRKTTDIPRLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 584 ~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 631 (658)
+|. ..+..+++|++|++++|......+..+..+++|+.|++++|+
T Consensus 172 ~~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 172 LPE---GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCT---TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCH---HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 331 235667778888887775333333445677778888777654
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.46 E-value=4.2e-13 Score=129.10 Aligned_cols=148 Identities=24% Similarity=0.321 Sum_probs=88.5
Q ss_pred CCceEEEEEEcCCCCCCCc-cccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc-c
Q 044750 176 GDKVRHLGLNFEGGAPLPM-SIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP-E 253 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp-~ 253 (658)
+..++.+.+.++.+...+. .+.++++|+.|++++|.+. ...+..|..+++|++|++ ++ +.+..+| .
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L------~~---n~l~~~~~~ 101 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ---TLSAGVFDDLTELGTLGL------AN---NQLASLPLG 101 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC---CCCTTTTTTCTTCCEEEC------TT---SCCCCCCTT
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC---ccCHhHhccCCcCCEEEC------CC---CcccccChh
Confidence 4556666776666655433 4566677777777766543 333455666677777777 33 4444444 3
Q ss_pred cccCCCccceeecCCccccccchh-hhcCCCCcEeecCCCCCCCCCCc-ccccccCCceeecCCcccCccCcCcCCCCCC
Q 044750 254 NIGKLIHLKYLNLSELCIERLPET-LCELYNLRKLDIRRCPNLRELPA-GIGKLMNMRSLLNGQTYSLKYMPIGISKLTS 331 (658)
Q Consensus 254 ~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~ 331 (658)
.+..+++|++|++++|.++.+|.. ++++++|++|++++|. +..+|. .+..+++|++|++++|......+..+..+++
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence 356667777777777776666554 4666777777777665 444544 4666677777777766433333334556666
Q ss_pred CCccC
Q 044750 332 LRTLE 336 (658)
Q Consensus 332 L~~L~ 336 (658)
|+.|+
T Consensus 181 L~~L~ 185 (251)
T 3m19_A 181 LQTIT 185 (251)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 66654
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=5e-13 Score=123.25 Aligned_cols=109 Identities=15% Similarity=0.215 Sum_probs=85.8
Q ss_pred ccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCcCCCc
Q 044750 510 VTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELPILED 589 (658)
Q Consensus 510 ~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p~l~~ 589 (658)
+..+++|++|+++++ .++. ..+..+..+++|++|++++|......|..+..+++|++|++++|..+..+|
T Consensus 84 l~~l~~L~~L~l~~n-~l~~-----~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---- 153 (197)
T 4ezg_A 84 ISGLSNLERLRIMGK-DVTS-----DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---- 153 (197)
T ss_dssp GTTCTTCCEEEEECT-TCBG-----GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG----
T ss_pred hhcCCCCCEEEeECC-ccCc-----ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH----
Confidence 457888999999887 3332 224567788999999999986555567778889999999999998677777
Q ss_pred cccCCCCCCCeeeccCCCCccccCCCCCCCCCccEEEEecCh
Q 044750 590 RKTTDIPRLSSLEIGYCPKLKVLPNYLLRTTTLQELIIHRCP 631 (658)
Q Consensus 590 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 631 (658)
.+..+++|++|++++|. ++.++ .+..+++|+.|++++|+
T Consensus 154 -~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 154 -PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp -GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC-
T ss_pred -hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCcc
Confidence 57788999999999996 66666 67788999999999886
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=3.9e-15 Score=151.80 Aligned_cols=91 Identities=14% Similarity=-0.004 Sum_probs=58.4
Q ss_pred CC-CCcceeeecCCccccccccccccccccCc-CcccceeeeeCCCCCCCCC-----ccccCCCCcceEEEccCCCCC--
Q 044750 512 AF-PKLKSLDIGGMEELEEWNYRITRKENISI-MPRLSSLWIRGCPKLKALP-----DYLLQSTALQELRIYFCDLLE-- 582 (658)
Q Consensus 512 ~~-~~L~~L~L~~~~~L~~~~~~~~~~~~~~~-~~~L~~L~L~~c~~l~~lp-----~~~~~l~~L~~L~l~~c~~l~-- 582 (658)
.+ ++|++|+|++| .+.+... ...+..+.. .++|++|+|++|. ++..+ ..+..+++|++|++++|..-.
T Consensus 193 ~~~~~L~~L~Ls~N-~i~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~ 269 (362)
T 3goz_A 193 SIPASVTSLDLSAN-LLGLKSY-AELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMS 269 (362)
T ss_dssp TSCTTCCEEECTTS-CGGGSCH-HHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCC
T ss_pred hCCCCCCEEECCCC-CCChhHH-HHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccC
Confidence 45 49999999998 3444221 011223333 4589999999984 44332 234678899999999996221
Q ss_pred -----CCcCCCccccCCCCCCCeeeccCCCCc
Q 044750 583 -----ELPILEDRKTTDIPRLSSLEIGYCPKL 609 (658)
Q Consensus 583 -----~~p~l~~~~~~~~~~L~~L~l~~c~~l 609 (658)
.++ ..+..+++|+.|++++|+.-
T Consensus 270 ~~~~~~l~----~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 270 KEQCKALG----AAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHHHH----TTSTTCCEEEEECTTSCBCC
T ss_pred HHHHHHHH----HHhccCCceEEEecCCCcCC
Confidence 122 24557788999999998743
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.45 E-value=3.3e-13 Score=134.32 Aligned_cols=67 Identities=13% Similarity=0.026 Sum_probs=35.1
Q ss_pred cccccc--cCCCccceeecCCccccc-cc----hhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCc
Q 044750 250 EIPENI--GKLIHLKYLNLSELCIER-LP----ETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQT 316 (658)
Q Consensus 250 ~lp~~~--~~l~~L~~L~L~~~~i~~-lp----~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 316 (658)
..|..+ ..+++|++|++++|.++. .| ..+..+++|++|++++|......|..++.+++|++|++++|
T Consensus 106 ~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 179 (310)
T 4glp_A 106 TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDN 179 (310)
T ss_dssp CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSC
T ss_pred chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCC
Confidence 344444 555666666666666552 11 22334556666666665533333345555666666666655
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.44 E-value=2.2e-13 Score=135.65 Aligned_cols=107 Identities=21% Similarity=0.192 Sum_probs=64.3
Q ss_pred CCCcceEEEeecCCCCcccccccccc--cCCCcccEEEEccccCCCCCCcccccc-cc----ccccCCCccceeecCCcc
Q 044750 198 GLNRLRTLLIYDKGPSLRSSILPGLF--SKLACLRALVIRQLSSFSHPSPNFIRE-IP----ENIGKLIHLKYLNLSELC 270 (658)
Q Consensus 198 ~~~~L~~L~l~~~~~~~~~~~~~~~~--~~l~~Lr~L~L~~~~~l~~~~~~~~~~-lp----~~~~~l~~L~~L~L~~~~ 270 (658)
.+++|+.|++++|... ...+..+ ..+++|++|+++++ .+.. .+ ..+..+++|++|++++|.
T Consensus 89 ~~~~L~~L~l~~n~l~---~~~~~~~~~~~~~~L~~L~Ls~n---------~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 156 (310)
T 4glp_A 89 AYSRLKELTLEDLKIT---GTMPPLPLEATGLALSSLRLRNV---------SWATGRSWLAELQQWLKPGLKVLSIAQAH 156 (310)
T ss_dssp HHSCCCEEEEESCCCB---SCCCCCSSSCCCBCCSSCEEESC---------CCSSTTSSHHHHHTTBCSCCCEEEEECCS
T ss_pred ccCceeEEEeeCCEec---cchhhhhhhccCCCCCEEEeecc---------cccchhhhhHHHHhhhccCCCEEEeeCCC
Confidence 3456777777777643 2334444 67777777777332 2221 11 234467777777777777
Q ss_pred ccccc-hhhhcCCCCcEeecCCCCCCCC--CC--cccccccCCceeecCCc
Q 044750 271 IERLP-ETLCELYNLRKLDIRRCPNLRE--LP--AGIGKLMNMRSLLNGQT 316 (658)
Q Consensus 271 i~~lp-~~i~~L~~L~~L~L~~~~~~~~--lp--~~i~~L~~L~~L~l~~~ 316 (658)
+..+| ..++++++|++|++++|...+. +| ..+..+++|++|++++|
T Consensus 157 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 157 SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT 207 (310)
T ss_dssp SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC
Confidence 77544 4667777777777777763321 22 22356777777777777
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=5.9e-13 Score=124.96 Aligned_cols=142 Identities=21% Similarity=0.210 Sum_probs=105.6
Q ss_pred EEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccc-cccccCCC
Q 044750 181 HLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREI-PENIGKLI 259 (658)
Q Consensus 181 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~l-p~~~~~l~ 259 (658)
.+...++.+..+|..+. ++++.|++.+|.+. ...+..|..+++|++|++ ++ +.+..+ |..+.+++
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~---~i~~~~~~~l~~L~~L~L------s~---N~i~~~~~~~~~~l~ 80 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIK---VIPPGAFSPYKKLRRIDL------SN---NQISELAPDAFQGLR 80 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCC---EECTTSSTTCTTCCEEEC------CS---SCCCEECTTTTTTCS
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCC---CcCHhHhhCCCCCCEEEC------CC---CcCCCcCHHHhhCCc
Confidence 34555566666666543 68899999988754 344557888899999999 44 555555 67788899
Q ss_pred ccceeecCCccccccchh-hhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccC
Q 044750 260 HLKYLNLSELCIERLPET-LCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLE 336 (658)
Q Consensus 260 ~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 336 (658)
+|++|+|++|.++.+|.. +.++++|++|+|++|......|..+..+++|++|++++|......+..+..+++|+.|+
T Consensus 81 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 999999999999888865 57899999999999884444466788899999999998854444344577788887775
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=8.1e-13 Score=124.93 Aligned_cols=140 Identities=26% Similarity=0.389 Sum_probs=107.4
Q ss_pred EEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccccc-ccCCC
Q 044750 181 HLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPEN-IGKLI 259 (658)
Q Consensus 181 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~-~~~l~ 259 (658)
.+...++....+|..+. ++|+.|++++|.+. ...+..|.++++|++|++ ++ +.+..+|.. +..++
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L------~~---N~l~~i~~~~~~~l~ 88 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQIT---KLEPGVFDSLINLKELYL------GS---NQLGALPVGVFDSLT 88 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCC---CCCTTTTTTCTTCCEEEC------CS---SCCCCCCTTTTTTCT
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccC---ccCHHHhhCccCCcEEEC------CC---CCCCCcChhhcccCC
Confidence 35555556666666543 78999999998764 444677888999999999 44 666777744 57889
Q ss_pred ccceeecCCccccccchh-hhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCc-CcCCCCCCCCccC
Q 044750 260 HLKYLNLSELCIERLPET-LCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMP-IGISKLTSLRTLE 336 (658)
Q Consensus 260 ~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~ 336 (658)
+|++|+|++|.++.+|.. +..+++|++|++++|. +..+|..+..+++|++|++++|. +..+| ..+..+++|+.|+
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEE
Confidence 999999999999877764 5789999999999987 77889889999999999999884 44555 4477777887774
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.43 E-value=7.9e-13 Score=127.13 Aligned_cols=143 Identities=23% Similarity=0.308 Sum_probs=113.8
Q ss_pred eEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc-ccccC
Q 044750 179 VRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP-ENIGK 257 (658)
Q Consensus 179 ~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp-~~~~~ 257 (658)
.+++.+.++....+|..+. ++++.|++++|... ...+..|.++++|++|++ ++ +.+..++ ..+..
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L------~~---n~l~~~~~~~~~~ 81 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLA---TLSDATFRGLTKLTWLNL------DY---NQLQTLSAGVFDD 81 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCC---CCCTTTTTTCTTCCEEEC------TT---SCCCCCCTTTTTT
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcC---ccCHhHhcCcccCCEEEC------CC---CcCCccCHhHhcc
Confidence 3467777777777777664 68999999999864 445567899999999999 44 5555554 45789
Q ss_pred CCccceeecCCccccccch-hhhcCCCCcEeecCCCCCCCCCCcc-cccccCCceeecCCcccCccCcC-cCCCCCCCCc
Q 044750 258 LIHLKYLNLSELCIERLPE-TLCELYNLRKLDIRRCPNLRELPAG-IGKLMNMRSLLNGQTYSLKYMPI-GISKLTSLRT 334 (658)
Q Consensus 258 l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~ 334 (658)
+++|++|++++|.++.+|. .++.+++|++|++++|. +..+|.. +..+++|++|++++|. +..+|. .++.+++|+.
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 159 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQT 159 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCE
Confidence 9999999999999997775 56899999999999997 6666665 5889999999999994 455554 5888888888
Q ss_pred cCc
Q 044750 335 LEK 337 (658)
Q Consensus 335 L~~ 337 (658)
|++
T Consensus 160 L~L 162 (251)
T 3m19_A 160 LSL 162 (251)
T ss_dssp EEC
T ss_pred EEC
Confidence 863
No 103
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.41 E-value=3.6e-13 Score=146.87 Aligned_cols=134 Identities=20% Similarity=0.234 Sum_probs=106.3
Q ss_pred hhhHHHHHHhhCC-HHHHHHHHhhhcCCCCHHHHHHHHhcccccc----c----cccCcchHHHHhhccCCCCCCchhhH
Q 044750 3 HAIVSSLLDQLKS-IAQDQVIGNLLRSKCTVKEWQRILESEMWKV----E----EIRKGLLAPLLLSYNDLPSNSMVKQC 73 (658)
Q Consensus 3 ~~~~~~i~~~c~g-Plai~~ig~~L~~~~~~~~W~~~~~~~~~~~----~----~~~~~i~~~L~~sY~~L~~~~~~k~c 73 (658)
.+.+.+|+++|+| ||||+++|+.|+.+. ..|+.+++.+.... . .....+..++..||+.|++ +.|.|
T Consensus 307 ~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~--~~~~~ 382 (591)
T 1z6t_A 307 PEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDY 382 (591)
T ss_dssp CTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT--TTHHH
T ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH--HHHHH
Confidence 3578999999999 999999999998863 36887765422111 1 1113588999999999999 89999
Q ss_pred HhhhcCCCCCceeCHHHHHHHHHHcCCcCCCcchhHHHHHHHHHHHHHhccCceeeeecCCCCeeceEEcCHHHHHHHHH
Q 044750 74 FSYCAVFPKDHYMHKKELIDMWMAQGYLNAEEDEEMEMVGEEYFNILATHSFFQEFETYGGDNEFMRCKMHDIVHDFAQF 153 (658)
Q Consensus 74 Fl~~~~fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~mhdl~~d~~~~ 153 (658)
|+++|+||+|+.|+.+.++..|.++ .+.+..++++|++++|++.... +... .|+||++++++++.
T Consensus 383 l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~~L~~~~Ll~~~~~---~~~~-~~~~H~lv~~~~~~ 447 (591)
T 1z6t_A 383 YTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDILQEFVNKSLLFCDRN---GKSF-RYYLHDLQVDFLTE 447 (591)
T ss_dssp HHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSSEEEEE---TTEE-EEECCHHHHHHHHH
T ss_pred HHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHHHHHHhCcCeEEecC---CCcc-EEEEcHHHHHHHHh
Confidence 9999999999999999999999542 2346889999999999986443 2223 59999999999987
Q ss_pred hh
Q 044750 154 VS 155 (658)
Q Consensus 154 ~~ 155 (658)
..
T Consensus 448 ~~ 449 (591)
T 1z6t_A 448 KN 449 (591)
T ss_dssp HT
T ss_pred hh
Confidence 73
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=1.6e-12 Score=122.06 Aligned_cols=144 Identities=20% Similarity=0.149 Sum_probs=110.1
Q ss_pred EEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccc-cccCCC
Q 044750 181 HLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPE-NIGKLI 259 (658)
Q Consensus 181 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~-~~~~l~ 259 (658)
.+.+.++.+..+|..+ .+.++.|++++|.+.. ......|..+++|++|++ ++ +.+..++. .+..++
T Consensus 15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~--~~~~~~~~~l~~L~~L~L------~~---N~i~~i~~~~~~~l~ 81 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTV--LEATGIFKKLPQLRKINF------SN---NKITDIEEGAFEGAS 81 (220)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCE--ECCCCCGGGCTTCCEEEC------CS---SCCCEECTTTTTTCT
T ss_pred EeEeCCCCcccCccCC--CCCCCEEEcCCCcCCc--cCchhhhccCCCCCEEEC------CC---CcCCEECHHHhCCCC
Confidence 5677777777677654 3467899999987542 112355788999999999 44 56666664 688899
Q ss_pred ccceeecCCccccccch-hhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccCc
Q 044750 260 HLKYLNLSELCIERLPE-TLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLEK 337 (658)
Q Consensus 260 ~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 337 (658)
+|++|+|++|.++.+|. .++++++|++|+|++|......|..+..+++|++|++++|......|..+..+++|+.|++
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 99999999999997765 4888999999999999844455778889999999999998655555777888888888753
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=7.1e-13 Score=118.82 Aligned_cols=62 Identities=32% Similarity=0.277 Sum_probs=28.8
Q ss_pred cccCCCccceeecCCccccc-cchhhhcCCCCcEeecCCCCCCCCCC--cccccccCCceeecCCc
Q 044750 254 NIGKLIHLKYLNLSELCIER-LPETLCELYNLRKLDIRRCPNLRELP--AGIGKLMNMRSLLNGQT 316 (658)
Q Consensus 254 ~~~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~ 316 (658)
.+..+++|++|++++|.++. +|..++++++|++|++++|. +..+| ..+..+++|++|++++|
T Consensus 66 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 66 NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS
T ss_pred hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC
Confidence 34444445555555544443 44444444555555554443 33333 34444444555555444
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=3.5e-12 Score=125.34 Aligned_cols=140 Identities=17% Similarity=0.231 Sum_probs=102.3
Q ss_pred CCceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccc
Q 044750 176 GDKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENI 255 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~ 255 (658)
...++.+.+.++.+..++ .+..+++|+.|++++|... . .+. +..+++|++|++ ++ +.+..+|. +
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~---~-~~~-l~~l~~L~~L~l------~~---n~l~~~~~-l 108 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT---D-IKP-LANLKNLGWLFL------DE---NKVKDLSS-L 108 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC---C-CGG-GTTCTTCCEEEC------CS---SCCCCGGG-G
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccC---C-Ccc-cccCCCCCEEEC------CC---CcCCCChh-h
Confidence 345777888877776554 4677888888888888753 2 222 788888888888 44 55566554 7
Q ss_pred cCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCcc
Q 044750 256 GKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTL 335 (658)
Q Consensus 256 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 335 (658)
..+++|++|++++|.++.++ .++.+++|++|++++|. +..+ ..+..+++|++|++++|. +..++. +..+++|+.|
T Consensus 109 ~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L 183 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNL 183 (291)
T ss_dssp TTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred ccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEE
Confidence 88888888888888888774 67888888888888887 5555 567888888888888884 444444 6677777777
Q ss_pred C
Q 044750 336 E 336 (658)
Q Consensus 336 ~ 336 (658)
+
T Consensus 184 ~ 184 (291)
T 1h6t_A 184 Y 184 (291)
T ss_dssp E
T ss_pred E
Confidence 4
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=3.8e-12 Score=135.80 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=22.2
Q ss_pred ceeeeeCCCCCCCCCccccCCCCcceEEEccCCCCCCCc
Q 044750 547 SSLWIRGCPKLKALPDYLLQSTALQELRIYFCDLLEELP 585 (658)
Q Consensus 547 ~~L~L~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~p 585 (658)
+.|++++| .++.+|..+..+++|+.|+|++|+....+|
T Consensus 210 ~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 210 IFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp EEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred eEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 66666655 444566655566666666666666544444
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=3.5e-12 Score=118.81 Aligned_cols=127 Identities=25% Similarity=0.395 Sum_probs=58.2
Q ss_pred CceEEEEEEcCCCCCCCcc-ccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccccc-
Q 044750 177 DKVRHLGLNFEGGAPLPMS-IYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPEN- 254 (658)
Q Consensus 177 ~~~~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~- 254 (658)
..++.+.+.++.+..++.. +..+++|+.|++.+|... ...+..|..+++|++|++ ++ +.+..+|..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~L------s~---n~l~~~~~~~ 95 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ---SLPNGVFNKLTSLTYLNL------ST---NQLQSLPNGV 95 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---CCCTTTTTTCTTCCEEEC------CS---SCCCCCCTTT
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC---ccChhhcCCCCCcCEEEC------CC---CcCCccCHhH
Confidence 3445555555544443332 344555555555555432 222233445555555555 22 333333332
Q ss_pred ccCCCccceeecCCccccccchh-hhcCCCCcEeecCCCCCCCCCCcc-cccccCCceeecCCc
Q 044750 255 IGKLIHLKYLNLSELCIERLPET-LCELYNLRKLDIRRCPNLRELPAG-IGKLMNMRSLLNGQT 316 (658)
Q Consensus 255 ~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~ 316 (658)
+..+++|++|++++|.++.+|.. +.++++|++|++++|. +..+|.. +..+++|++|++++|
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCC
Confidence 34455555555555555544432 3445555555555544 3333332 344555555555554
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=3e-12 Score=114.73 Aligned_cols=133 Identities=24% Similarity=0.188 Sum_probs=112.1
Q ss_pred CCceEEEEEEcCCCC--CCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccc-cc
Q 044750 176 GDKVRHLGLNFEGGA--PLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIRE-IP 252 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~-lp 252 (658)
+..++.+.+.++.+. .+|..+..+++|+.|++++|... .. ..+..+++|++|++ ++ +.+.. +|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~----~~-~~~~~l~~L~~L~L------s~---N~l~~~~~ 88 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI----SV-SNLPKLPKLKKLEL------SE---NRIFGGLD 88 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC----CC-SSCCCCSSCCEEEE------ES---CCCCSCCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC----Ch-hhhccCCCCCEEEC------cC---CcCchHHH
Confidence 678999999999887 68888889999999999999854 22 67889999999999 44 45555 77
Q ss_pred ccccCCCccceeecCCccccccc--hhhhcCCCCcEeecCCCCCCCCCCc----ccccccCCceeecCCcccCccCcC
Q 044750 253 ENIGKLIHLKYLNLSELCIERLP--ETLCELYNLRKLDIRRCPNLRELPA----GIGKLMNMRSLLNGQTYSLKYMPI 324 (658)
Q Consensus 253 ~~~~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~----~i~~L~~L~~L~l~~~~~~~~~p~ 324 (658)
..+..+++|++|++++|.++.+| ..++.+++|++|++++|. +..+|. .+..+++|++|++++| ....+|.
T Consensus 89 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp HHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred HHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 77778999999999999999877 689999999999999998 677776 7889999999999998 4455554
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=5.2e-12 Score=119.36 Aligned_cols=132 Identities=20% Similarity=0.266 Sum_probs=113.1
Q ss_pred cCCCceEEEEEEcCCCCCC-CccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc
Q 044750 174 SFGDKVRHLGLNFEGGAPL-PMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP 252 (658)
Q Consensus 174 ~~~~~~~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp 252 (658)
..+..++.+.+.++.+..+ +..+..+++|+.|++++|.+. ...+..|..+++|++|++ ++ +.+..+|
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~---~i~~~~~~~l~~L~~L~L------s~---N~l~~l~ 104 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG---ALPVGVFDSLTQLTVLDL------GT---NQLTVLP 104 (229)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEEC------CS---SCCCCCC
T ss_pred CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC---CcChhhcccCCCcCEEEC------CC---CcCCccC
Confidence 3467899999999998875 556889999999999999864 444567899999999999 55 6677776
Q ss_pred cc-ccCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCC-cccccccCCceeecCCccc
Q 044750 253 EN-IGKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELP-AGIGKLMNMRSLLNGQTYS 318 (658)
Q Consensus 253 ~~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~ 318 (658)
.. +..+++|++|++++|.++.+|..+..+++|++|++++|. +..+| ..+..+++|+.|++++|..
T Consensus 105 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred hhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCc
Confidence 55 688999999999999999999999999999999999998 66666 4578899999999999854
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.34 E-value=9.6e-12 Score=122.17 Aligned_cols=145 Identities=21% Similarity=0.279 Sum_probs=121.6
Q ss_pred CCCceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccccc
Q 044750 175 FGDKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPEN 254 (658)
Q Consensus 175 ~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~ 254 (658)
....++.+.+.++.+...+. +..+++|+.|++++|... .+ ..+..+++|++|++ ++ +.+..+ ..
T Consensus 66 ~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~----~~-~~l~~l~~L~~L~L------~~---n~i~~~-~~ 129 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK----DL-SSLKDLKKLKSLSL------EH---NGISDI-NG 129 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC----CG-GGGTTCTTCCEEEC------TT---SCCCCC-GG
T ss_pred cCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC----CC-hhhccCCCCCEEEC------CC---CcCCCC-hh
Confidence 35789999999999887766 889999999999999753 22 34899999999999 44 556666 46
Q ss_pred ccCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCc
Q 044750 255 IGKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRT 334 (658)
Q Consensus 255 ~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 334 (658)
+..+++|++|++++|.++.+ ..++.+++|++|++++|. +..++. +..+++|++|++++| .+..+|. +..+++|+.
T Consensus 130 l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~ 204 (291)
T 1h6t_A 130 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDV 204 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSE
T ss_pred hcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCC-cCCCChh-hccCCCCCE
Confidence 88999999999999999988 589999999999999998 677766 999999999999999 5566664 888999999
Q ss_pred cCceee
Q 044750 335 LEKFVV 340 (658)
Q Consensus 335 L~~~~~ 340 (658)
|++...
T Consensus 205 L~l~~n 210 (291)
T 1h6t_A 205 LELFSQ 210 (291)
T ss_dssp EEEEEE
T ss_pred EECcCC
Confidence 875543
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=1.5e-12 Score=114.02 Aligned_cols=125 Identities=22% Similarity=0.214 Sum_probs=87.6
Q ss_pred CCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccc-cchh
Q 044750 199 LNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIER-LPET 277 (658)
Q Consensus 199 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~ 277 (658)
.++|+.|++++|.... ...+..+..+++|++|++ ++ +.+..+ ..++.+++|++|++++|.++. +|..
T Consensus 16 ~~~l~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l------~~---n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~ 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE--GKLEGLTDEFEELEFLST------IN---VGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL 83 (149)
T ss_dssp GGGCSEEECTTCBCBT--TBCCSCCTTCTTCCEEEC------TT---SCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH
T ss_pred CccCeEEEccCCcCCh--hHHHHHHhhcCCCcEEEC------cC---CCCCCc-hhhhcCCCCCEEECCCCcccchHHHH
Confidence 4677788887776421 244556677888888888 33 444455 567778888888888888886 7777
Q ss_pred hhcCCCCcEeecCCCCCCCCCC--cccccccCCceeecCCcccCccCcC----cCCCCCCCCccCc
Q 044750 278 LCELYNLRKLDIRRCPNLRELP--AGIGKLMNMRSLLNGQTYSLKYMPI----GISKLTSLRTLEK 337 (658)
Q Consensus 278 i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~ 337 (658)
++.+++|++|++++|. +..+| ..++.+++|++|++++|. +...|. .++.+++|+.|++
T Consensus 84 ~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred hhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 7778888888888887 55554 677888888888888883 444444 4666777777653
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=3.2e-12 Score=141.69 Aligned_cols=151 Identities=22% Similarity=0.208 Sum_probs=90.9
Q ss_pred CCceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCc-ccccccccccCCCcccEEEEccccCCCCCCcccccccccc
Q 044750 176 GDKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSL-RSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPEN 254 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~ 254 (658)
...++++++..+.+...+........|+.+.+....... .....+..|..++.|++|+| ++ +.+..+|..
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~L------s~---n~l~~l~~~ 242 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDL------SN---LQIFNISAN 242 (727)
T ss_dssp --------------------------------------------------CCCCCCEEEC------TT---SCCSCCCGG
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEEC------CC---CCCCCCChh
Confidence 345788888777776555555455555555444332110 11344677889999999999 55 667788888
Q ss_pred ccCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCc
Q 044750 255 IGKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRT 334 (658)
Q Consensus 255 ~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 334 (658)
+.++++|++|+|++|.|+.+|..+++|++|++|+|++|. +..+|.+++.|++|++|++++| .+..+|..++.+++|+.
T Consensus 243 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQF 320 (727)
T ss_dssp GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCC
T ss_pred hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccE
Confidence 889999999999999999999999999999999999998 6689999999999999999999 56788988999999998
Q ss_pred cCc
Q 044750 335 LEK 337 (658)
Q Consensus 335 L~~ 337 (658)
|++
T Consensus 321 L~L 323 (727)
T 4b8c_D 321 LGV 323 (727)
T ss_dssp EEC
T ss_pred EeC
Confidence 863
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=5.4e-12 Score=118.39 Aligned_cols=133 Identities=17% Similarity=0.138 Sum_probs=110.6
Q ss_pred CCCceEEEEEEcCCCCCCC--ccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc
Q 044750 175 FGDKVRHLGLNFEGGAPLP--MSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP 252 (658)
Q Consensus 175 ~~~~~~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp 252 (658)
.+..++.+.+.++.+..++ ..+..+++|+.|++++|.+. ...+..|.++++|++|++ ++ +.+..++
T Consensus 30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~---~i~~~~~~~l~~L~~L~L------s~---N~l~~~~ 97 (220)
T 2v70_A 30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT---DIEEGAFEGASGVNEILL------TS---NRLENVQ 97 (220)
T ss_dssp CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEEC------CS---SCCCCCC
T ss_pred CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC---EECHHHhCCCCCCCEEEC------CC---CccCccC
Confidence 3566789999999988753 34789999999999999864 444567999999999999 55 6666665
Q ss_pred c-cccCCCccceeecCCcccccc-chhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccC
Q 044750 253 E-NIGKLIHLKYLNLSELCIERL-PETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSL 319 (658)
Q Consensus 253 ~-~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~ 319 (658)
. .+..+++|++|+|++|.++.+ |..+.++++|++|+|++|......|..+..+++|+.|++++|...
T Consensus 98 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 98 HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp GGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred HhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 4 488999999999999999966 678999999999999999844444888999999999999999543
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.32 E-value=1.3e-11 Score=114.84 Aligned_cols=140 Identities=28% Similarity=0.405 Sum_probs=108.6
Q ss_pred EEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccccc-ccCCC
Q 044750 181 HLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPEN-IGKLI 259 (658)
Q Consensus 181 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~-~~~l~ 259 (658)
.+....++...+|..+ .++|+.|++++|... ...+..|..+++|++|++ ++ +.+..+|.. +..++
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l------~~---n~l~~~~~~~~~~l~ 76 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLK---SLPNGVFDELTSLTQLYL------GG---NKLQSLPNGVFNKLT 76 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCC---CCCTTTTTTCTTCSEEEC------CS---SCCCCCCTTTTTTCT
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccC---cCChhhhcccccCcEEEC------CC---CccCccChhhcCCCC
Confidence 4445555555566544 468999999999764 444566889999999999 44 566677654 68899
Q ss_pred ccceeecCCccccccchh-hhcCCCCcEeecCCCCCCCCCCcc-cccccCCceeecCCcccCccCcC-cCCCCCCCCccC
Q 044750 260 HLKYLNLSELCIERLPET-LCELYNLRKLDIRRCPNLRELPAG-IGKLMNMRSLLNGQTYSLKYMPI-GISKLTSLRTLE 336 (658)
Q Consensus 260 ~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~ 336 (658)
+|++|++++|.++.+|.. ++++++|++|++++|. +..+|.. +..+++|++|++++|.. ..+|. .+..+++|+.|+
T Consensus 77 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEE
T ss_pred CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEE
Confidence 999999999999988765 6899999999999998 6666654 78899999999999954 44554 477788888875
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=2.3e-12 Score=112.91 Aligned_cols=124 Identities=26% Similarity=0.237 Sum_probs=105.9
Q ss_pred CCceEEEEEEcCCCC--CCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccc-cc
Q 044750 176 GDKVRHLGLNFEGGA--PLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIRE-IP 252 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~-lp 252 (658)
+..++++.+.++.+. .++..+..+++|+.|++++|... .. ..+..+++|++|++ ++ +.+.. +|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~----~~-~~~~~l~~L~~L~L------s~---n~i~~~~~ 81 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT----SI-ANLPKLNKLKKLEL------SD---NRVSGGLE 81 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC----CC-TTCCCCTTCCEEEC------CS---SCCCSCTH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC----Cc-hhhhcCCCCCEEEC------CC---CcccchHH
Confidence 567899999999887 67888889999999999999754 22 67889999999999 44 55555 78
Q ss_pred ccccCCCccceeecCCccccccc--hhhhcCCCCcEeecCCCCCCCCCCc----ccccccCCceeecC
Q 044750 253 ENIGKLIHLKYLNLSELCIERLP--ETLCELYNLRKLDIRRCPNLRELPA----GIGKLMNMRSLLNG 314 (658)
Q Consensus 253 ~~~~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~----~i~~L~~L~~L~l~ 314 (658)
..++.+++|++|++++|.++.+| ..++.+++|++|++++|. +..+|. .+..+++|++|+++
T Consensus 82 ~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 87888999999999999999865 789999999999999997 666665 68899999999985
No 117
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=4.7e-12 Score=114.34 Aligned_cols=128 Identities=23% Similarity=0.174 Sum_probs=97.1
Q ss_pred cccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCcccccc
Q 044750 195 SIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERL 274 (658)
Q Consensus 195 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~l 274 (658)
.+.++++|+.|++++|... .++......++|++|++ ++ +.+..+ ..+..+++|++|++++|.++.+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~----~i~~~~~~~~~L~~L~L------s~---N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~ 79 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP----VIENLGATLDQFDAIDF------SD---NEIRKL-DGFPLLRRLKTLLVNNNRICRI 79 (176)
T ss_dssp EEECTTSCEEEECTTSCCC----SCCCGGGGTTCCSEEEC------CS---SCCCEE-CCCCCCSSCCEEECCSSCCCEE
T ss_pred hcCCcCCceEEEeeCCCCc----hhHHhhhcCCCCCEEEC------CC---CCCCcc-cccccCCCCCEEECCCCccccc
Confidence 4557888899999888753 22333333448999999 44 556666 5788889999999999999988
Q ss_pred chhh-hcCCCCcEeecCCCCCCCCCCc--ccccccCCceeecCCcccCccCcCc----CCCCCCCCccCce
Q 044750 275 PETL-CELYNLRKLDIRRCPNLRELPA--GIGKLMNMRSLLNGQTYSLKYMPIG----ISKLTSLRTLEKF 338 (658)
Q Consensus 275 p~~i-~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~~~ 338 (658)
|+.+ +.+++|++|++++|. +..+|. .+..+++|++|++++|. +..+|.. +..+++|+.|++.
T Consensus 80 ~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 80 GEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp CSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred CcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCC
Confidence 8655 889999999999987 677887 78889999999999984 4456664 6777888877643
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=7.8e-12 Score=117.25 Aligned_cols=131 Identities=21% Similarity=0.296 Sum_probs=111.6
Q ss_pred CCCceEEEEEEcCCCCCCCc-cccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccc
Q 044750 175 FGDKVRHLGLNFEGGAPLPM-SIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPE 253 (658)
Q Consensus 175 ~~~~~~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~ 253 (658)
.+..++.+.+.++.+..++. .+..+++|+.|++++|.+. ...+..|.++++|++|+| ++ +.+..+|.
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~---~~~~~~~~~l~~L~~L~L------s~---N~l~~l~~ 97 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS---ELAPDAFQGLRSLNSLVL------YG---NKITELPK 97 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC---EECTTTTTTCSSCCEEEC------CS---SCCCCCCT
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC---CcCHHHhhCCcCCCEEEC------CC---CcCCccCH
Confidence 35789999999999887655 6889999999999999864 455778999999999999 55 77778886
Q ss_pred c-ccCCCccceeecCCcccccc-chhhhcCCCCcEeecCCCCCCCCCCc-ccccccCCceeecCCccc
Q 044750 254 N-IGKLIHLKYLNLSELCIERL-PETLCELYNLRKLDIRRCPNLRELPA-GIGKLMNMRSLLNGQTYS 318 (658)
Q Consensus 254 ~-~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~ 318 (658)
. +..+++|++|+|++|.++.+ |..+..+++|++|+|++|. +..+|. .+..+++|+.|++++|..
T Consensus 98 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 6 57899999999999999976 5678999999999999998 655554 588899999999999853
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.30 E-value=1.3e-11 Score=119.30 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=114.5
Q ss_pred CCceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccc
Q 044750 176 GDKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENI 255 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~ 255 (658)
...++.+.+.++.+..++ .+..+++|+.|++++|... . .+. +..+++|++|++ ++ +.+..+|...
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~---~-~~~-l~~l~~L~~L~L------~~---N~l~~l~~~~ 104 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQIS---D-LSP-LKDLTKLEELSV------NR---NRLKNLNGIP 104 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC---C-CGG-GTTCSSCCEEEC------CS---SCCSCCTTCC
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccC---C-Chh-hccCCCCCEEEC------CC---CccCCcCccc
Confidence 457888999988888766 6788999999999999754 2 233 889999999999 55 6666776543
Q ss_pred cCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCcc
Q 044750 256 GKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTL 335 (658)
Q Consensus 256 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 335 (658)
. ++|++|++++|.++.+| .++.+++|++|++++|. +..+| .+..+++|++|++++|. +..+ ..+..+++|+.|
T Consensus 105 ~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L 177 (263)
T 1xeu_A 105 S--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWI 177 (263)
T ss_dssp C--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCCEE
T ss_pred c--CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCc-Ccch-HHhccCCCCCEE
Confidence 3 89999999999999886 68999999999999998 77776 68899999999999994 4444 568888888888
Q ss_pred Ccee
Q 044750 336 EKFV 339 (658)
Q Consensus 336 ~~~~ 339 (658)
++..
T Consensus 178 ~l~~ 181 (263)
T 1xeu_A 178 DLTG 181 (263)
T ss_dssp EEEE
T ss_pred eCCC
Confidence 7544
No 120
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.30 E-value=1.1e-11 Score=133.90 Aligned_cols=140 Identities=21% Similarity=0.269 Sum_probs=72.5
Q ss_pred CCceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccc
Q 044750 176 GDKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENI 255 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~ 255 (658)
...++.|.+.++.+..++. +..+++|+.|.+++|.+. .+ ..+..+++|+.|+| ++ +.+..++ .+
T Consensus 64 l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~----~l-~~l~~l~~L~~L~L------s~---N~l~~l~-~l 127 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK----DL-SSLKDLKKLKSLSL------EH---NGISDIN-GL 127 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC----CC-TTSTTCTTCCEEEC------TT---SCCCCCG-GG
T ss_pred CCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC----CC-hhhccCCCCCEEEe------cC---CCCCCCc-cc
Confidence 4455555555555554433 455555666666555432 11 23455555666665 22 3333332 35
Q ss_pred cCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCcc
Q 044750 256 GKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTL 335 (658)
Q Consensus 256 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 335 (658)
..+++|++|+|++|.++.+ ..++.+++|+.|+|++|. +..+++ +..+++|++|++++| .+..+| .+..+++|+.|
T Consensus 128 ~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L 202 (605)
T 1m9s_A 128 VHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVL 202 (605)
T ss_dssp GGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEE
T ss_pred cCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCC-CCCCCh-HHccCCCCCEE
Confidence 5555666666666655555 355556666666666555 333333 555566666666655 333333 35555555555
Q ss_pred C
Q 044750 336 E 336 (658)
Q Consensus 336 ~ 336 (658)
+
T Consensus 203 ~ 203 (605)
T 1m9s_A 203 E 203 (605)
T ss_dssp E
T ss_pred E
Confidence 4
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.29 E-value=3.5e-11 Score=128.33 Aligned_cols=127 Identities=24% Similarity=0.292 Sum_probs=81.7
Q ss_pred ceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccC
Q 044750 178 KVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGK 257 (658)
Q Consensus 178 ~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~ 257 (658)
+++.+.+.++.+..+|..+ +++|+.|++++|.+. .+| ..+++|++|++ ++ +.+..+|. +.+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~----~ip---~~l~~L~~L~L------s~---N~l~~ip~-l~~ 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI----SLP---ELPASLEYLDA------CD---NRLSTLPE-LPA 120 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS----CCC---CCCTTCCEEEC------CS---SCCSCCCC-CCT
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc----ccc---cccCCCCEEEc------cC---CCCCCcch-hhc
Confidence 4566777777666555544 367777777777643 223 34677777777 44 55555666 544
Q ss_pred CCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccC
Q 044750 258 LIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLE 336 (658)
Q Consensus 258 l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 336 (658)
+|++|++++|.++.+|. .+++|++|++++|. +..+|. .+++|++|++++|. +..+|. +. ++|+.|+
T Consensus 121 --~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~ 186 (571)
T 3cvr_A 121 --SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALD 186 (571)
T ss_dssp --TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEE
T ss_pred --CCCEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEE
Confidence 77777777777777776 57777777777776 555665 46677777777773 444555 44 5555553
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=5.4e-13 Score=135.89 Aligned_cols=107 Identities=15% Similarity=0.139 Sum_probs=57.7
Q ss_pred CCCcceEEEeecCCCCccccccc----ccccCCC-cccEEEEccccCCCCCCccccccc-cccccCC-----Cccceeec
Q 044750 198 GLNRLRTLLIYDKGPSLRSSILP----GLFSKLA-CLRALVIRQLSSFSHPSPNFIREI-PENIGKL-----IHLKYLNL 266 (658)
Q Consensus 198 ~~~~L~~L~l~~~~~~~~~~~~~----~~~~~l~-~Lr~L~L~~~~~l~~~~~~~~~~l-p~~~~~l-----~~L~~L~L 266 (658)
..++|+.|++++|... .... ..|..++ +|++|++ ++ +.+... +..+..+ ++|++|+|
T Consensus 20 ~~~~L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~L------s~---N~l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLY---SISTVELIQAFANTPASVTSLNL------SG---NSLGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp SCTTCCEEECTTSCGG---GSCHHHHHHHHHTCCTTCCEEEC------CS---SCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred CCCCceEEEccCCCCC---hHHHHHHHHHHHhCCCceeEEEC------cC---CCCCHHHHHHHHHHHhccCCCccEEEC
Confidence 3344777777777532 1222 4456666 6777777 22 333322 3333332 67777777
Q ss_pred CCccccccc-hh----hhcC-CCCcEeecCCCCCCCCCCc-cc----cc-ccCCceeecCCcc
Q 044750 267 SELCIERLP-ET----LCEL-YNLRKLDIRRCPNLRELPA-GI----GK-LMNMRSLLNGQTY 317 (658)
Q Consensus 267 ~~~~i~~lp-~~----i~~L-~~L~~L~L~~~~~~~~lp~-~i----~~-L~~L~~L~l~~~~ 317 (658)
++|.++..+ .. +..+ ++|++|++++|. +...+. .+ .. .++|++|++++|.
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 777766333 22 3333 677777777776 433332 22 22 2467777777763
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=1.3e-11 Score=111.46 Aligned_cols=127 Identities=24% Similarity=0.171 Sum_probs=108.0
Q ss_pred CCceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccc
Q 044750 176 GDKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENI 255 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~ 255 (658)
...++.+.+.++.+..++......++|+.|++++|... .+ ..|..+++|++|++ ++ +.+..+|..+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~----~~-~~l~~l~~L~~L~L------s~---N~l~~~~~~~ 83 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR----KL-DGFPLLRRLKTLLV------NN---NRICRIGEGL 83 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCC----EE-CCCCCCSSCCEEEC------CS---SCCCEECSCH
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCC----cc-cccccCCCCCEEEC------CC---CcccccCcch
Confidence 66789999999998877554444459999999999854 22 67889999999999 55 6777888665
Q ss_pred -cCCCccceeecCCccccccch--hhhcCCCCcEeecCCCCCCCCCCcc----cccccCCceeecCCcc
Q 044750 256 -GKLIHLKYLNLSELCIERLPE--TLCELYNLRKLDIRRCPNLRELPAG----IGKLMNMRSLLNGQTY 317 (658)
Q Consensus 256 -~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~----i~~L~~L~~L~l~~~~ 317 (658)
..+++|++|++++|.++.+|. .++.+++|++|++++|. +..+|.. +..+++|+.|++++|.
T Consensus 84 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 899999999999999999987 89999999999999998 7788875 8999999999999884
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.24 E-value=2.3e-11 Score=111.42 Aligned_cols=125 Identities=22% Similarity=0.271 Sum_probs=86.6
Q ss_pred EEEEEEcCCCCCCCccccCCCcceEEEeecCCCCccccccc-ccccCCCcccEEEEccccCCCCCCccccccc-cccccC
Q 044750 180 RHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILP-GLFSKLACLRALVIRQLSSFSHPSPNFIREI-PENIGK 257 (658)
Q Consensus 180 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~l-p~~~~~ 257 (658)
+.+.+.++.+..+|..+. ++++.|++.+|.+. ...+ ..|..+++|++|++ ++ +.+..+ |..+..
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~---~~~~~~~~~~l~~L~~L~L------s~---N~l~~~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELG---RISSDGLFGRLPHLVKLEL------KR---NQLTGIEPNAFEG 76 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCC---SBCCSCSGGGCTTCCEEEC------CS---SCCCCBCTTTTTT
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCC---ccCCccccccCCCCCEEEC------CC---CCCCCcCHhHcCC
Confidence 355666666666666543 37888888887653 2222 24777888888888 44 445554 567778
Q ss_pred CCccceeecCCccccccch-hhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCccc
Q 044750 258 LIHLKYLNLSELCIERLPE-TLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYS 318 (658)
Q Consensus 258 l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~ 318 (658)
+++|++|+|++|.++.++. .++++++|++|++++|......|..+..+++|++|++++|..
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 8888888888888886654 477788888888888874445577777888888888887743
No 125
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.23 E-value=4.3e-11 Score=129.20 Aligned_cols=165 Identities=18% Similarity=0.187 Sum_probs=120.8
Q ss_pred CCceEEEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccc
Q 044750 176 GDKVRHLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENI 255 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~ 255 (658)
...++.+.+.++.+..++ .+..+++|+.|++++|.+. .. +. +..+++|+.|+| ++ +.+..+| .+
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~---~~-~~-l~~l~~L~~L~L------s~---N~l~~l~-~l 105 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT---DI-KP-LTNLKNLGWLFL------DE---NKIKDLS-SL 105 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCC---CC-GG-GGGCTTCCEEEC------CS---SCCCCCT-TS
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCC---CC-hh-hccCCCCCEEEC------cC---CCCCCCh-hh
Confidence 345677777777777554 5788999999999998753 22 22 788999999999 44 5566665 68
Q ss_pred cCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCcc
Q 044750 256 GKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTL 335 (658)
Q Consensus 256 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 335 (658)
..+++|++|+|++|.+..+| .+..+++|+.|+|++|. +..+ ..+..+++|+.|++++|.. ..++. +..+++|+.|
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L 180 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQNL 180 (605)
T ss_dssp TTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCC-CCCGG-GTTCTTCCEE
T ss_pred ccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcC-CCchh-hccCCCCCEE
Confidence 88999999999999999875 68899999999999987 6666 5688999999999999954 44444 8888888888
Q ss_pred CceeeccCCCCCccccccccccCcccCCceecC
Q 044750 336 EKFVVGGGVDGGSTCRLESLKNLQLLRKCGIEG 368 (658)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~ 368 (658)
++..+... .+..+..+++|+.+.+.+
T Consensus 181 ~Ls~N~i~-------~l~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 181 YLSKNHIS-------DLRALAGLKNLDVLELFS 206 (605)
T ss_dssp ECCSSCCC-------BCGGGTTCTTCSEEECCS
T ss_pred ECcCCCCC-------CChHHccCCCCCEEEccC
Confidence 64332211 123345555555555543
No 126
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.23 E-value=2.4e-11 Score=117.40 Aligned_cols=121 Identities=21% Similarity=0.209 Sum_probs=86.4
Q ss_pred cccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCcccccc
Q 044750 195 SIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERL 274 (658)
Q Consensus 195 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~l 274 (658)
.+..+++|+.|++.+|... .++ .+..+++|+.|++ ++ +.+..++. +..+++|++|++++|.++.+
T Consensus 36 ~~~~l~~L~~L~l~~n~i~----~l~-~l~~l~~L~~L~L------~~---N~i~~~~~-l~~l~~L~~L~L~~N~l~~l 100 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQ----SLA-GMQFFTNLKELHL------SH---NQISDLSP-LKDLTKLEELSVNRNRLKNL 100 (263)
T ss_dssp CHHHHTTCSEEECTTSCCC----CCT-TGGGCTTCCEEEC------CS---SCCCCCGG-GTTCSSCCEEECCSSCCSCC
T ss_pred chhhcCcCcEEECcCCCcc----cch-HHhhCCCCCEEEC------CC---CccCCChh-hccCCCCCEEECCCCccCCc
Confidence 4567788888888888643 223 5677888888888 44 56666666 77888888888888888877
Q ss_pred chhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccC
Q 044750 275 PETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLE 336 (658)
Q Consensus 275 p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 336 (658)
|.... ++|++|++++|. +..+| .+..+++|+.|++++|. +..+| .++.+++|+.|+
T Consensus 101 ~~~~~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~ 156 (263)
T 1xeu_A 101 NGIPS--ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLD 156 (263)
T ss_dssp TTCCC--SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEE
T ss_pred Ccccc--CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEE
Confidence 75333 888888888886 66665 47788888888888883 44444 466666666664
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.23 E-value=9.8e-12 Score=126.37 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=28.6
Q ss_pred ccCCCccceeecCCccccccch-hhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCc
Q 044750 255 IGKLIHLKYLNLSELCIERLPE-TLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQT 316 (658)
Q Consensus 255 ~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 316 (658)
+..+++|++|+|++|.++.+|. .+.++++|++|+|++|......|..+..+++|++|++++|
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence 4444555555555555444433 2444555555555554422222334444555555555544
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.19 E-value=1.6e-11 Score=136.10 Aligned_cols=121 Identities=21% Similarity=0.182 Sum_probs=99.4
Q ss_pred CCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccc
Q 044750 192 LPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCI 271 (658)
Q Consensus 192 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i 271 (658)
.+..+..+++|+.|++++|.+. .++..+..+++|++|+| ++ +.+..+|..+++|++|++|+|++|.|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~----~l~~~~~~l~~L~~L~L------s~---N~l~~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF----NISANIFKYDFLTRLYL------NG---NSLTELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp ------CCCCCCEEECTTSCCS----CCCGGGGGCCSCSCCBC------TT---SCCSCCCGGGGGGTTCCEEECTTSCC
T ss_pred ChhhhccCCCCcEEECCCCCCC----CCChhhcCCCCCCEEEe------eC---CcCcccChhhhCCCCCCEEeCcCCcC
Confidence 4566788999999999999753 34455558999999999 55 66778999999999999999999999
Q ss_pred cccchhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcC
Q 044750 272 ERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGI 326 (658)
Q Consensus 272 ~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i 326 (658)
+.+|..+++|++|++|+|++|. +..+|.+++.|++|++|++++|.....+|..+
T Consensus 283 ~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 283 TSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp SSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 9999999999999999999997 78999999999999999999997665555544
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.18 E-value=4.8e-11 Score=128.00 Aligned_cols=98 Identities=20% Similarity=0.244 Sum_probs=72.7
Q ss_pred cccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccchhhhcCCCCcEeecCCCCCCCCCCcccccccC
Q 044750 228 CLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLRKLDIRRCPNLRELPAGIGKLMN 307 (658)
Q Consensus 228 ~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~ 307 (658)
.|++|++ ++ +.+..+|. ++.+++|++|+|++|.++.+|..++++++|++|+|++|. +..+| .++.+++
T Consensus 442 ~L~~L~L------s~---n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~ 509 (567)
T 1dce_A 442 DVRVLHL------AH---KDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPR 509 (567)
T ss_dssp TCSEEEC------TT---SCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSS
T ss_pred CceEEEe------cC---CCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCC
Confidence 4777888 44 56666776 777888888888888888888888888888888888876 56677 6778888
Q ss_pred CceeecCCcccCccC-cCcCCCCCCCCccCc
Q 044750 308 MRSLLNGQTYSLKYM-PIGISKLTSLRTLEK 337 (658)
Q Consensus 308 L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~~ 337 (658)
|+.|++++|...... |..++.+++|+.|++
T Consensus 510 L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp CCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred CcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 888888887443333 777777888877753
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=1.2e-10 Score=106.62 Aligned_cols=119 Identities=21% Similarity=0.275 Sum_probs=69.6
Q ss_pred EEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc-ccccCCCc
Q 044750 182 LGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP-ENIGKLIH 260 (658)
Q Consensus 182 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp-~~~~~l~~ 260 (658)
+.+.++.+..+|..+. ++|+.|++.+|.+. .++..|.++++|++|++ ++ +.+..++ ..|..+++
T Consensus 15 l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~----~ip~~~~~l~~L~~L~L------s~---N~i~~i~~~~f~~l~~ 79 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGIP--RDVTELYLDGNQFT----LVPKELSNYKHLTLIDL------SN---NRISTLSNQSFSNMTQ 79 (193)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSCCC----SCCGGGGGCTTCCEEEC------CS---SCCCCCCTTTTTTCTT
T ss_pred EEcCCCCCCcCCCCCC--CCCCEEECCCCcCc----hhHHHhhcccCCCEEEC------CC---CcCCEeCHhHccCCCC
Confidence 4444555555554432 46666666666542 23455666666666666 33 4444444 34666666
Q ss_pred cceeecCCccccccch-hhhcCCCCcEeecCCCCCCCCCCc-ccccccCCceeecCCc
Q 044750 261 LKYLNLSELCIERLPE-TLCELYNLRKLDIRRCPNLRELPA-GIGKLMNMRSLLNGQT 316 (658)
Q Consensus 261 L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~ 316 (658)
|++|+|++|.++.+|. .++++++|++|+|++|. +..+|. .+..+++|++|++++|
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCC
Confidence 6666666666665553 46666666666666665 445554 3556666666666666
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.17 E-value=1.1e-10 Score=105.42 Aligned_cols=123 Identities=25% Similarity=0.393 Sum_probs=87.0
Q ss_pred EEEEEcCCCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccccc-ccCCC
Q 044750 181 HLGLNFEGGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPEN-IGKLI 259 (658)
Q Consensus 181 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~-~~~l~ 259 (658)
.+.+.++.+..+|..+ .++|+.|++++|... ...+..|..+++|++|++ ++ +.+..+|.. +..++
T Consensus 11 ~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l------~~---n~l~~~~~~~~~~l~ 76 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGI--PSSATRLELESNKLQ---SLPHGVFDKLTQLTKLSL------SQ---NQIQSLPDGVFDKLT 76 (177)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECCSSCCC---CCCTTTTTTCTTCSEEEC------CS---SCCCCCCTTTTTTCT
T ss_pred EEEecCCCCccCCCCC--CCCCcEEEeCCCccc---EeCHHHhcCcccccEEEC------CC---CcceEeChhHccCCC
Confidence 4555566666555443 368888888888653 344456778888888888 44 556666644 57788
Q ss_pred ccceeecCCccccccchh-hhcCCCCcEeecCCCCCCCCCCcc-cccccCCceeecCCccc
Q 044750 260 HLKYLNLSELCIERLPET-LCELYNLRKLDIRRCPNLRELPAG-IGKLMNMRSLLNGQTYS 318 (658)
Q Consensus 260 ~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~ 318 (658)
+|++|++++|.++.+|.. ++.+++|++|++++|. +..+|.. +..+++|++|++++|..
T Consensus 77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCe
Confidence 888888888888877654 5778888888888886 5666665 46688888888888743
No 132
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.17 E-value=7.6e-11 Score=119.77 Aligned_cols=144 Identities=23% Similarity=0.262 Sum_probs=105.2
Q ss_pred cCCCceEEEEEEcCCCCCCCcc-cc-CCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccc
Q 044750 174 SFGDKVRHLGLNFEGGAPLPMS-IY-GLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREI 251 (658)
Q Consensus 174 ~~~~~~~~l~l~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~l 251 (658)
..+..++.+.++++.+..++.. +. ++++|+.|++++|.+. ...+..|.++++|++|+| ++ +.+..+
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~---~i~~~~~~~l~~L~~L~L------s~---N~l~~~ 103 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN---FISSEAFVPVPNLRYLDL------SS---NHLHTL 103 (361)
T ss_dssp SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEEC------CS---SCCCEE
T ss_pred cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC---ccChhhccCCCCCCEEEC------CC---CcCCcC
Confidence 3456678888888888765544 44 7889999999888754 344567888889999999 44 566666
Q ss_pred cc-cccCCCccceeecCCcccccc-chhhhcCCCCcEeecCCCCCCCCCCccc----ccccCCceeecCCcccCccCc-C
Q 044750 252 PE-NIGKLIHLKYLNLSELCIERL-PETLCELYNLRKLDIRRCPNLRELPAGI----GKLMNMRSLLNGQTYSLKYMP-I 324 (658)
Q Consensus 252 p~-~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i----~~L~~L~~L~l~~~~~~~~~p-~ 324 (658)
+. .+..+++|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+|..+ ..+++|++|++++|. +..+| .
T Consensus 104 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~ 181 (361)
T 2xot_A 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLT 181 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC-CCCCCHH
T ss_pred CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHH
Confidence 54 477888999999999988865 5678888999999999887 77777765 568889999998884 44444 2
Q ss_pred cCCCCCC
Q 044750 325 GISKLTS 331 (658)
Q Consensus 325 ~i~~l~~ 331 (658)
.+..++.
T Consensus 182 ~~~~l~~ 188 (361)
T 2xot_A 182 DLQKLPA 188 (361)
T ss_dssp HHHHSCH
T ss_pred HhhhccH
Confidence 3444443
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.15 E-value=1.1e-10 Score=106.86 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=94.3
Q ss_pred eEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccccc--ccCCCccceeecCCcccccc-chhhh
Q 044750 203 RTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPEN--IGKLIHLKYLNLSELCIERL-PETLC 279 (658)
Q Consensus 203 ~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~--~~~l~~L~~L~L~~~~i~~l-p~~i~ 279 (658)
++++++++... .+|..+ ...|++|++ ++ +.+..++.. ++.+++|++|+|++|.++.+ |..++
T Consensus 11 ~~l~~s~~~l~----~ip~~~--~~~l~~L~l------~~---n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 75 (192)
T 1w8a_A 11 TTVDCTGRGLK----EIPRDI--PLHTTELLL------ND---NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE 75 (192)
T ss_dssp TEEECTTSCCS----SCCSCC--CTTCSEEEC------CS---CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT
T ss_pred CEEEcCCCCcC----cCccCC--CCCCCEEEC------CC---CcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC
Confidence 67888888653 334333 238999999 55 667777753 88999999999999999966 67899
Q ss_pred cCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCccC
Q 044750 280 ELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTLE 336 (658)
Q Consensus 280 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 336 (658)
++++|++|+|++|......|..+..+++|++|++++|......|..+..+++|+.|+
T Consensus 76 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 999999999999984444445588999999999999976666678888888888885
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=1.1e-12 Score=121.18 Aligned_cols=133 Identities=19% Similarity=0.194 Sum_probs=98.9
Q ss_pred CCCCCCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecC
Q 044750 188 GGAPLPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLS 267 (658)
Q Consensus 188 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~ 267 (658)
.+..++..+..+++|+.|++++|... .++ .+.++++|++|++ ++ +.+..+|..+..+++|++|+++
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~----~l~-~~~~l~~L~~L~l------~~---n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIE----KIS-SLSGMENLRILSL------GR---NLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEES----CCC-CHHHHTTCCEEEE------EE---EEECSCSSHHHHHHHCSEEEEE
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCc----ccc-ccccCCCCCEEEC------CC---CCcccccchhhcCCcCCEEECc
Confidence 44445667788889999999888643 234 6788888999998 44 5667788777778889999999
Q ss_pred CccccccchhhhcCCCCcEeecCCCCCCCCCCc--ccccccCCceeecCCcccCccCcCc----------CCCCCCCCcc
Q 044750 268 ELCIERLPETLCELYNLRKLDIRRCPNLRELPA--GIGKLMNMRSLLNGQTYSLKYMPIG----------ISKLTSLRTL 335 (658)
Q Consensus 268 ~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----------i~~l~~L~~L 335 (658)
+|.++.+| .++.+++|++|++++|. +..+|. .+..+++|++|++++|......|.. +..+++|+.|
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 99888887 68888899999998887 665554 6788888999999888654444432 4556666655
Q ss_pred C
Q 044750 336 E 336 (658)
Q Consensus 336 ~ 336 (658)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 4
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.10 E-value=3e-10 Score=103.83 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=91.9
Q ss_pred eEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccch-hhhcC
Q 044750 203 RTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPE-TLCEL 281 (658)
Q Consensus 203 ~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L 281 (658)
+.++++++... .+|..+ .+.|++|++ ++ +.+..+|..+..+++|++|+|++|.|+.++. .+.++
T Consensus 13 ~~l~~~~~~l~----~ip~~~--~~~l~~L~L------~~---n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l 77 (193)
T 2wfh_A 13 TVVRCSNKGLK----VLPKGI--PRDVTELYL------DG---NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM 77 (193)
T ss_dssp TEEECTTSCCS----SCCSCC--CTTCCEEEC------CS---SCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CEEEcCCCCCC----cCCCCC--CCCCCEEEC------CC---CcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCC
Confidence 56777777643 233332 358999999 55 7778899899999999999999999997764 68999
Q ss_pred CCCcEeecCCCCCCCCCC-cccccccCCceeecCCcccCccCcC-cCCCCCCCCccC
Q 044750 282 YNLRKLDIRRCPNLRELP-AGIGKLMNMRSLLNGQTYSLKYMPI-GISKLTSLRTLE 336 (658)
Q Consensus 282 ~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~ 336 (658)
++|++|+|++|. +..+| ..+..+++|++|++++|. +..+|. .+..+++|+.|+
T Consensus 78 ~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 78 TQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp TTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEE
Confidence 999999999998 55554 568899999999999994 555555 477788888875
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.06 E-value=2.9e-10 Score=121.94 Aligned_cols=119 Identities=20% Similarity=0.187 Sum_probs=100.6
Q ss_pred CcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccchhhh
Q 044750 200 NRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPETLC 279 (658)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~ 279 (658)
..|+.|++++|.+. .+|. |..+++|++|++ ++ +.+..+|..++.+++|++|+|++|.++.+| .++
T Consensus 441 ~~L~~L~Ls~n~l~----~lp~-~~~l~~L~~L~L------s~---N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~ 505 (567)
T 1dce_A 441 ADVRVLHLAHKDLT----VLCH-LEQLLLVTHLDL------SH---NRLRALPPALAALRCLEVLQASDNALENVD-GVA 505 (567)
T ss_dssp TTCSEEECTTSCCS----SCCC-GGGGTTCCEEEC------CS---SCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGT
T ss_pred cCceEEEecCCCCC----CCcC-ccccccCcEeec------Cc---ccccccchhhhcCCCCCEEECCCCCCCCCc-ccC
Confidence 35899999999754 3455 899999999999 55 777899999999999999999999999998 899
Q ss_pred cCCCCcEeecCCCCCCCCC--CcccccccCCceeecCCcccCccCcCcCC----CCCCCCcc
Q 044750 280 ELYNLRKLDIRRCPNLREL--PAGIGKLMNMRSLLNGQTYSLKYMPIGIS----KLTSLRTL 335 (658)
Q Consensus 280 ~L~~L~~L~L~~~~~~~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~~i~----~l~~L~~L 335 (658)
++++|++|+|++|. +..+ |..++.+++|+.|++++|. +...|..+. .+++|+.|
T Consensus 506 ~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 506 NLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp TCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence 99999999999998 6655 8999999999999999994 555555443 36777766
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=1.2e-09 Score=97.96 Aligned_cols=99 Identities=17% Similarity=0.263 Sum_probs=70.6
Q ss_pred eEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccc-cccccCCCccceeecCCccccccchh-hhc
Q 044750 203 RTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREI-PENIGKLIHLKYLNLSELCIERLPET-LCE 280 (658)
Q Consensus 203 ~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~ 280 (658)
+.++++++... .+|..+ .+.|++|++ ++ +.+..+ |..+.++++|++|+|++|.|+.+|.. +.+
T Consensus 15 ~~l~~~~n~l~----~iP~~~--~~~L~~L~L------s~---N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 15 TLVNCQNIRLA----SVPAGI--PTDKQRLWL------NN---NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79 (174)
T ss_dssp SEEECCSSCCS----SCCSCC--CTTCSEEEC------CS---SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cEEEeCCCCCC----ccCCCc--CCCCcEEEe------CC---CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence 56677766542 233322 267888888 44 555555 55677888888888888888887765 478
Q ss_pred CCCCcEeecCCCCCCCCCCcc-cccccCCceeecCCcc
Q 044750 281 LYNLRKLDIRRCPNLRELPAG-IGKLMNMRSLLNGQTY 317 (658)
Q Consensus 281 L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~ 317 (658)
+++|++|+|++|. +..+|.. +..+++|++|++++|.
T Consensus 80 l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 80 LTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCC
Confidence 8888888888887 6666665 7788888888888884
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.94 E-value=2.7e-09 Score=95.58 Aligned_cols=87 Identities=28% Similarity=0.389 Sum_probs=44.5
Q ss_pred cccccccccccCCCccceeecCCcccccc-chhhhcCCCCcEeecCCCCCCCCCCcc-cccccCCceeecCCcccCccCc
Q 044750 246 NFIREIPENIGKLIHLKYLNLSELCIERL-PETLCELYNLRKLDIRRCPNLRELPAG-IGKLMNMRSLLNGQTYSLKYMP 323 (658)
Q Consensus 246 ~~~~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p 323 (658)
+.++.+|..+. ++|++|+|++|.|+.+ |..++++++|++|+|++|. +..+|.. +..+++|++|++++| .+..+|
T Consensus 22 n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~ 97 (174)
T 2r9u_A 22 IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN-HLKSIP 97 (174)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC-ccceeC
Confidence 44455555443 4555555555555544 3345555555555555554 4444443 345555555555555 233334
Q ss_pred Cc-CCCCCCCCccC
Q 044750 324 IG-ISKLTSLRTLE 336 (658)
Q Consensus 324 ~~-i~~l~~L~~L~ 336 (658)
.. +..+++|+.|+
T Consensus 98 ~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 98 RGAFDNLKSLTHIY 111 (174)
T ss_dssp TTTTTTCTTCSEEE
T ss_pred HHHhccccCCCEEE
Confidence 33 55555555553
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.91 E-value=5e-11 Score=109.88 Aligned_cols=121 Identities=21% Similarity=0.272 Sum_probs=91.9
Q ss_pred cceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCccccccchhhhc
Q 044750 201 RLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERLPETLCE 280 (658)
Q Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 280 (658)
.++...+.+....+ ..++..|..+++|++|++ ++ +.+..+| .+..+++|++|++++|.++.+|..++.
T Consensus 24 ~l~~~~l~~~~~~l--~~l~~~~~~l~~L~~L~l------s~---n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~ 91 (198)
T 1ds9_A 24 EAEKVELHGMIPPI--EKMDATLSTLKACKHLAL------ST---NNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAV 91 (198)
T ss_dssp TCSEEECCBCCTTC--CCCHHHHHHTTTCSEEEC------SE---EEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred chheeEeccccCcH--hhhhHHHhcCCCCCEEEC------CC---CCCcccc-ccccCCCCCEEECCCCCcccccchhhc
Confidence 34445554442221 334457888999999999 44 6677787 888899999999999999999988888
Q ss_pred CCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcC--cCCCCCCCCccC
Q 044750 281 LYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPI--GISKLTSLRTLE 336 (658)
Q Consensus 281 L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~ 336 (658)
+++|++|++++|. +..+| .+..+++|++|++++|. +..+|. .+..+++|++|+
T Consensus 92 ~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 92 ADTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp HHHCSEEEEEEEE-CCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEE
T ss_pred CCcCCEEECcCCc-CCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEE
Confidence 8999999999987 66677 68889999999999984 444333 467777777775
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.90 E-value=6.4e-09 Score=93.69 Aligned_cols=119 Identities=28% Similarity=0.368 Sum_probs=90.6
Q ss_pred ceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccc-cccCCCccceeecCCccccccchh-hh
Q 044750 202 LRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPE-NIGKLIHLKYLNLSELCIERLPET-LC 279 (658)
Q Consensus 202 L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~-i~ 279 (658)
.+.+.+.++... .++.. -.+.|+.|++ ++ +.+..+|. .+..+++|++|++++|.++.+|.. ++
T Consensus 9 ~~~l~~~~~~l~----~~p~~--~~~~l~~L~l------~~---n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 73 (177)
T 2o6r_A 9 GTEIRCNSKGLT----SVPTG--IPSSATRLEL------ES---NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD 73 (177)
T ss_dssp TTEEECCSSCCS----SCCTT--CCTTCSEEEC------CS---SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEecCCCCc----cCCCC--CCCCCcEEEe------CC---CcccEeCHHHhcCcccccEEECCCCcceEeChhHcc
Confidence 467777777642 22322 2468999999 44 55666665 468899999999999999988765 68
Q ss_pred cCCCCcEeecCCCCCCCCCCcc-cccccCCceeecCCcccCccCcCc-CCCCCCCCccCc
Q 044750 280 ELYNLRKLDIRRCPNLRELPAG-IGKLMNMRSLLNGQTYSLKYMPIG-ISKLTSLRTLEK 337 (658)
Q Consensus 280 ~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~ 337 (658)
.+++|++|++++|. +..+|.. +..+++|++|++++|. +..+|.. +..+++|+.|++
T Consensus 74 ~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 74 KLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred CCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEe
Confidence 99999999999998 6666654 6889999999999994 4566655 577888888853
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=8.4e-09 Score=103.23 Aligned_cols=80 Identities=11% Similarity=-0.000 Sum_probs=53.4
Q ss_pred ccCCCCcceeeecCCccccccccccccccccCcCcccc-eeeeeCCCCCCCCC-ccccCCCCcceEEEccCCCCCCCcCC
Q 044750 510 VTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLS-SLWIRGCPKLKALP-DYLLQSTALQELRIYFCDLLEELPIL 587 (658)
Q Consensus 510 ~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~-~L~L~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~p~l 587 (658)
+.+|++|+.+++.+. ++.+. ...+..+++|+ .+.+.+ .++.++ ..+.++++|+++++.++. ++.++.
T Consensus 246 F~~~~~L~~l~l~~n--i~~I~-----~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~- 314 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHN--LKTIG-----QRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGD- 314 (329)
T ss_dssp TTTCTTCCEEECCTT--CCEEC-----TTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECT-
T ss_pred hhCCCCCCEEECCcc--cceeh-----HHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccch-
Confidence 446778888887763 44332 35667788888 888876 455554 456678888888887664 344442
Q ss_pred CccccCCCCCCCeee
Q 044750 588 EDRKTTDIPRLSSLE 602 (658)
Q Consensus 588 ~~~~~~~~~~L~~L~ 602 (658)
..+.+|++|+.|.
T Consensus 315 --~aF~~~~~L~~ly 327 (329)
T 3sb4_A 315 --ELFGNGVPSKLIY 327 (329)
T ss_dssp --TTTCTTCCCCEEE
T ss_pred --hhhcCCcchhhhc
Confidence 4667788888775
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.87 E-value=3.9e-09 Score=94.20 Aligned_cols=101 Identities=19% Similarity=0.233 Sum_probs=69.1
Q ss_pred ceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccc-cccccCCCccceeecCCccccccchh-hh
Q 044750 202 LRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREI-PENIGKLIHLKYLNLSELCIERLPET-LC 279 (658)
Q Consensus 202 L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-i~ 279 (658)
.+.++++++... .+|..+ .+.|++|++ ++ +.+..+ |..+..+++|++|+|++|.|+.+|.. +.
T Consensus 11 ~~~l~~s~n~l~----~ip~~~--~~~l~~L~L------~~---N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 11 GTTVDCSGKSLA----SVPTGI--PTTTQVLYL------YD---NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp TTEEECTTSCCS----SCCSCC--CTTCSEEEC------CS---SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEeCCCCcC----ccCccC--CCCCcEEEc------CC---CcCCccChhhhcCcccCCEEECCCCCcCccChhhcc
Confidence 456666666542 223322 367788888 44 555555 45677888888888888888877764 47
Q ss_pred cCCCCcEeecCCCCCCCCCCc-ccccccCCceeecCCccc
Q 044750 280 ELYNLRKLDIRRCPNLRELPA-GIGKLMNMRSLLNGQTYS 318 (658)
Q Consensus 280 ~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~ 318 (658)
++++|++|+|++|. +..+|. .+..+++|++|++++|..
T Consensus 76 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 76 KLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 78888888888877 556655 477788888888888743
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.81 E-value=1e-08 Score=91.42 Aligned_cols=96 Identities=27% Similarity=0.344 Sum_probs=79.7
Q ss_pred ccEEEEccccCCCCCCccccccccccccCCCccceeecCCcccccc-chhhhcCCCCcEeecCCCCCCCCCCcc-ccccc
Q 044750 229 LRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIERL-PETLCELYNLRKLDIRRCPNLRELPAG-IGKLM 306 (658)
Q Consensus 229 Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~ 306 (658)
.+++++ ++ +.++.+|..+. ++|++|+|++|.|+.+ |..++++++|++|+|++|. +..+|.. +..++
T Consensus 11 ~~~l~~------s~---n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~ 78 (170)
T 3g39_A 11 GTTVDC------SG---KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLT 78 (170)
T ss_dssp TTEEEC------TT---SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCEEEe------CC---CCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCC
Confidence 577888 55 77888998774 8999999999999977 5678999999999999998 6677765 58999
Q ss_pred CCceeecCCcccCccCcC-cCCCCCCCCccCc
Q 044750 307 NMRSLLNGQTYSLKYMPI-GISKLTSLRTLEK 337 (658)
Q Consensus 307 ~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~ 337 (658)
+|++|++++|. +..+|. .+..+++|+.|++
T Consensus 79 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 79 QLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCc-cCEeCHHHhcCCCCCCEEEe
Confidence 99999999995 555555 4888999998863
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=1.3e-08 Score=101.92 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=77.7
Q ss_pred CCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCc-cccCCCCcc-eEEEccCCCCCCCcCCCc
Q 044750 512 AFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPD-YLLQSTALQ-ELRIYFCDLLEELPILED 589 (658)
Q Consensus 512 ~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~-~~~~l~~L~-~L~l~~c~~l~~~p~l~~ 589 (658)
.+++|+.++|.++ .++.+. ...+..+++|+.|.+.++ ++.++. .+.++++|+ .+.+.+ .++.++.
T Consensus 224 ~~~~L~~l~L~~n-~i~~I~-----~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~--- 290 (329)
T 3sb4_A 224 YMPNLVSLDISKT-NATTIP-----DFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF--- 290 (329)
T ss_dssp HCTTCCEEECTTB-CCCEEC-----TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT---
T ss_pred hcCCCeEEECCCC-Ccceec-----HhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch---
Confidence 4778888888875 344332 456788999999999986 666654 467899999 999987 4565652
Q ss_pred cccCCCCCCCeeeccCCCCccccCC-CCCCCCCccEEEE
Q 044750 590 RKTTDIPRLSSLEIGYCPKLKVLPN-YLLRTTTLQELII 627 (658)
Q Consensus 590 ~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l 627 (658)
..+.+|++|+.|++.++. ++.++. .+.+|++|+.++.
T Consensus 291 ~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEEC
T ss_pred hhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhcc
Confidence 578889999999998874 666655 7888999998864
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.73 E-value=3.4e-07 Score=93.96 Aligned_cols=124 Identities=10% Similarity=0.032 Sum_probs=68.7
Q ss_pred ccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc-ccccCCCccceeecCCcccc
Q 044750 194 MSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP-ENIGKLIHLKYLNLSELCIE 272 (658)
Q Consensus 194 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~i~ 272 (658)
.+|.+|.+|+++.+..+-. ..-...|.++.+|+.+++. ..++.++ ..+.++.+|+.+.+..+ +.
T Consensus 65 ~AF~~c~~L~~i~lp~~i~----~I~~~aF~~c~~L~~i~lp----------~~l~~I~~~aF~~c~~L~~i~~p~~-l~ 129 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPSTVR----EIGEFAFENCSKLEIINIP----------DSVKMIGRCTFSGCYALKSILLPLM-LK 129 (394)
T ss_dssp TTTTTCTTEEEEECCTTCC----EECTTTTTTCTTCCEECCC----------TTCCEECTTTTTTCTTCCCCCCCTT-CC
T ss_pred HHhhCCCCceEEEeCCCcc----CcchhHhhCCCCCcEEEeC----------CCceEccchhhcccccchhhcccCc-ee
Confidence 4577888888888865421 2234567888888888882 1234443 34667777777766544 33
Q ss_pred ccc-hhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCc-CcCCCCCCCCccC
Q 044750 273 RLP-ETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMP-IGISKLTSLRTLE 336 (658)
Q Consensus 273 ~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~ 336 (658)
.+. ..+.++..++.........+ -...+..+++|+.+.+..+ ...++ ..+..+++|+.+.
T Consensus 130 ~i~~~aF~~~~~~~~~~~~~~~~i--~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~ 191 (394)
T 4fs7_A 130 SIGVEAFKGCDFKEITIPEGVTVI--GDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIK 191 (394)
T ss_dssp EECTTTTTTCCCSEEECCTTCCEE--CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCC
T ss_pred eecceeeecccccccccCcccccc--chhhhcccCCCcEEecCCc--cceeccccccCCCCceEEE
Confidence 332 24444444433333322211 1234666777887777654 22333 3356666776664
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.71 E-value=1.5e-06 Score=88.82 Aligned_cols=98 Identities=10% Similarity=0.191 Sum_probs=52.6
Q ss_pred ccCcCcccceeeeeCCCCCCCCCc-cccCCCCcceEEEccCCCCCCCcCCCccccCCCCCCCeeeccCCCCccccCCCCC
Q 044750 539 NISIMPRLSSLWIRGCPKLKALPD-YLLQSTALQELRIYFCDLLEELPILEDRKTTDIPRLSSLEIGYCPKLKVLPNYLL 617 (658)
Q Consensus 539 ~~~~~~~L~~L~L~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 617 (658)
.+..+++|+.+.+.+ .++.++. .+.++++|+.+.|..+ ++.++ ...+.+| +|+.+.+.++..-...+..+.
T Consensus 295 aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~---~~aF~~~-~L~~l~l~~n~~~~l~~~~F~ 366 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQIN---FSAFNNT-GIKEVKVEGTTPPQVFEKVWY 366 (401)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEEC---TTSSSSS-CCCEEEECCSSCCBCCCSSCC
T ss_pred HhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEc---HHhCCCC-CCCEEEEcCCCCccccccccc
Confidence 444555555555552 2443432 3445666777766543 33333 1345666 777777777743332334556
Q ss_pred CCC-CccEEEEecChhHHHhhcCCCCCCcccc
Q 044750 618 RTT-TLQELIIHRCPLLENRYREGEGEDWHKI 648 (658)
Q Consensus 618 ~l~-~L~~L~l~~c~~l~~~~~~~~~~~~~~i 648 (658)
.++ .++.|++.... .+.++.+ ..|...
T Consensus 367 ~~~~~l~~l~vp~~~--~~~y~~a--~~W~~f 394 (401)
T 4fdw_A 367 GFPDDITVIRVPAES--VEKYKNA--NGWRDF 394 (401)
T ss_dssp CSCTTCCEEEECGGG--HHHHHHS--TTGGGG
T ss_pred CCCCCccEEEeCHHH--HHHhhhc--cchhhh
Confidence 664 77888887643 3334332 346543
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.48 E-value=5.3e-06 Score=84.75 Aligned_cols=119 Identities=20% Similarity=0.283 Sum_probs=73.7
Q ss_pred CCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccc-cccCCCccceeecCCccccccc-
Q 044750 198 GLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPE-NIGKLIHLKYLNLSELCIERLP- 275 (658)
Q Consensus 198 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~i~~lp- 275 (658)
.+..++.+.+..+-. ......|.++ +|+.+.+ .. .+..++. +|.+ .+|+.+.+.. .++.++
T Consensus 111 ~~~~l~~i~ip~~i~----~I~~~aF~~~-~L~~i~l------~~----~i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~ 173 (401)
T 4fdw_A 111 ILKGYNEIILPNSVK----SIPKDAFRNS-QIAKVVL------NE----GLKSIGDMAFFN-STVQEIVFPS-TLEQLKE 173 (401)
T ss_dssp ECSSCSEEECCTTCC----EECTTTTTTC-CCSEEEC------CT----TCCEECTTTTTT-CCCCEEECCT-TCCEECS
T ss_pred ecCCccEEEECCccC----EehHhhcccC-CccEEEe------CC----CccEECHHhcCC-CCceEEEeCC-CccEehH
Confidence 345666666655421 2223456665 5788877 21 2455543 3444 3688888875 566555
Q ss_pred hhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCc-CcCCCCCCCCccC
Q 044750 276 ETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMP-IGISKLTSLRTLE 336 (658)
Q Consensus 276 ~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~ 336 (658)
..|.++.+|+.+++.++. +..+|.......+|+.+.+..+ +..++ ..+.++++|+.+.
T Consensus 174 ~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp STTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEE
T ss_pred HHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEe
Confidence 367788888888888765 6777766666678888888654 44444 3366677777664
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.47 E-value=1.9e-07 Score=94.13 Aligned_cols=89 Identities=13% Similarity=0.158 Sum_probs=59.1
Q ss_pred ccccccCCCcccEEEEccccCCCCCCcccccccc-ccccCCCccceeecCCccccccch-hhhcCCCCcEeecCCCCCCC
Q 044750 219 LPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP-ENIGKLIHLKYLNLSELCIERLPE-TLCELYNLRKLDIRRCPNLR 296 (658)
Q Consensus 219 ~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~ 296 (658)
+|. +..+.+|+.|+| + .++.+..+| ..|+.|++|++|+|++|.|+.+|+ .|++|++|++|+|++|. +.
T Consensus 24 ip~-l~~~~~L~~L~l------~--~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~ 93 (347)
T 2ifg_A 24 LHH-LPGAENLTELYI------E--NQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LE 93 (347)
T ss_dssp TTT-SCSCSCCSEEEC------C--SCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CS
T ss_pred cCC-CCCCCCeeEEEc------c--CCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cc
Confidence 455 777777777777 2 114555555 457777777777777777775554 56777777777777776 56
Q ss_pred CCCcccccccCCceeecCCcc
Q 044750 297 ELPAGIGKLMNMRSLLNGQTY 317 (658)
Q Consensus 297 ~lp~~i~~L~~L~~L~l~~~~ 317 (658)
.+|..+....+|+.|++.+|.
T Consensus 94 ~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 94 SLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCCSTTTCSCCCCEEECCSSC
T ss_pred eeCHHHcccCCceEEEeeCCC
Confidence 666655444347777777763
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.44 E-value=4.2e-07 Score=91.61 Aligned_cols=99 Identities=22% Similarity=0.177 Sum_probs=81.1
Q ss_pred EEEEcC-CCCCCCccccCCCcceEEEeec-CCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc-ccccCC
Q 044750 182 LGLNFE-GGAPLPMSIYGLNRLRTLLIYD-KGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP-ENIGKL 258 (658)
Q Consensus 182 l~l~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp-~~~~~l 258 (658)
+...++ .+..+|. +..+++|+.|++++ |.+. ...+..|.++++|++|+| ++ +.+..++ ..|.+|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~---~~~~~~~~~l~~L~~L~l------~~---N~l~~~~~~~~~~l 79 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQ---HLELRDLRGLGELRNLTI------VK---SGLRFVAPDAFHFT 79 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCC---EECGGGSCSCCCCSEEEC------CS---SCCCEECTTGGGSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCC---CcChhHhccccCCCEEEC------CC---CccceeCHHHhcCC
Confidence 455565 6777888 88999999999996 8754 455678999999999999 54 5666665 468999
Q ss_pred CccceeecCCccccccchhhhcCCCCcEeecCCCC
Q 044750 259 IHLKYLNLSELCIERLPETLCELYNLRKLDIRRCP 293 (658)
Q Consensus 259 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 293 (658)
++|++|+|++|.|+.+|..+.....|+.|+|.+|.
T Consensus 80 ~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 80 PRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred cCCCEEeCCCCccceeCHHHcccCCceEEEeeCCC
Confidence 99999999999999998866555559999999987
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.20 E-value=2.7e-05 Score=79.72 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=82.8
Q ss_pred CCceEEEEEEcCCCCCC-CccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc-c
Q 044750 176 GDKVRHLGLNFEGGAPL-PMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP-E 253 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp-~ 253 (658)
...++.+.+..+ +..+ ..+|.+|++|+.+.+..+-. ..-...|.++..|+.+.+. ..+..+. .
T Consensus 70 c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l~----~I~~~aF~~c~~L~~i~~p----------~~l~~i~~~ 134 (394)
T 4fs7_A 70 CRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSVK----MIGRCTFSGCYALKSILLP----------LMLKSIGVE 134 (394)
T ss_dssp CTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTCC----EECTTTTTTCTTCCCCCCC----------TTCCEECTT
T ss_pred CCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCce----Eccchhhcccccchhhccc----------Cceeeecce
Confidence 356778877543 3333 45688999999999976531 2234668888888887662 1222332 2
Q ss_pred cccCCCccceeecCCcccccc-chhhhcCCCCcEeecCCCCCCCCCCc-ccccccCCceeecCCcccCccCc-CcCCCCC
Q 044750 254 NIGKLIHLKYLNLSELCIERL-PETLCELYNLRKLDIRRCPNLRELPA-GIGKLMNMRSLLNGQTYSLKYMP-IGISKLT 330 (658)
Q Consensus 254 ~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~ 330 (658)
.+.++..++...... +..+ ...+.++.+|+.+.+.++ +..++. .+..+.+|+.+.+..+ +..++ ..+.+++
T Consensus 135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~ 208 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECI 208 (394)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCT
T ss_pred eeecccccccccCcc--ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhcccc
Confidence 344444333333222 2222 236778888998888754 334443 4566788888888665 33333 3356667
Q ss_pred CCCccC
Q 044750 331 SLRTLE 336 (658)
Q Consensus 331 ~L~~L~ 336 (658)
.|+.+.
T Consensus 209 ~L~~i~ 214 (394)
T 4fs7_A 209 LLENME 214 (394)
T ss_dssp TCCBCC
T ss_pred ccceee
Confidence 776664
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=9.2e-07 Score=77.56 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=33.5
Q ss_pred cCCCCcceEEEccCCCCCCCcCCCccccCC----CCCCCeeeccCCCCccccC-CCCCCCCCccEEEEecChhHH
Q 044750 565 LQSTALQELRIYFCDLLEELPILEDRKTTD----IPRLSSLEIGYCPKLKVLP-NYLLRTTTLQELIIHRCPLLE 634 (658)
Q Consensus 565 ~~l~~L~~L~l~~c~~l~~~p~l~~~~~~~----~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~ 634 (658)
..+++|++|+|++|..+++-- + ..+.. +++|++|+|++|+.++.-. ..+.++++|+.|++++||.++
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~g-L--~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGC-L--ERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHH-H--HHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred cCCCCCCEEEeCCCCccCHHH-H--HHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 345555555555555444311 0 01222 2356666666666555411 123456667777777776554
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=4.3e-06 Score=73.33 Aligned_cols=99 Identities=10% Similarity=0.095 Sum_probs=63.7
Q ss_pred CCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCcc-
Q 044750 192 LPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELC- 270 (658)
Q Consensus 192 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~- 270 (658)
+|.....-.+|+.|+++++.+.- .. ...+.++++|+.|+|++|..+++ ..+..+...-..+++|++|+|++|.
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd--~G-L~~L~~~~~L~~L~L~~C~~ItD---~gL~~L~~~~~~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMS--IG-FDHMEGLQYVEKIRLCKCHYIED---GCLERLSQLENLQKSMLEMEIISCGN 126 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCG--GG-GGGGTTCSCCCEEEEESCTTCCH---HHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred CCcccCCCceEeEEeCcCCCccH--HH-HHHhcCCCCCCEEEeCCCCccCH---HHHHHHHhcccccCCCCEEEcCCCCc
Confidence 34433334578899998887431 22 23457888899999988877776 4444443210013468888888885
Q ss_pred cc--ccchhhhcCCCCcEeecCCCCCCCC
Q 044750 271 IE--RLPETLCELYNLRKLDIRRCPNLRE 297 (658)
Q Consensus 271 i~--~lp~~i~~L~~L~~L~L~~~~~~~~ 297 (658)
|+ .+ ..+.++++|++|++++|..++.
T Consensus 127 ITD~Gl-~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 127 VTDKGI-IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CCHHHH-HHGGGCTTCCEEEEESCTTCCC
T ss_pred CCHHHH-HHHhcCCCCCEEECCCCCCCCc
Confidence 66 23 3566788888888888875554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.13 E-value=9.3e-07 Score=88.64 Aligned_cols=92 Identities=17% Similarity=0.115 Sum_probs=49.7
Q ss_pred CCCCcceeeecCCccc--cccccccc-cccccCcCcccceeeeeCCCCCCCCCccc---cCCCCcceEEEccCCCCCC--
Q 044750 512 AFPKLKSLDIGGMEEL--EEWNYRIT-RKENISIMPRLSSLWIRGCPKLKALPDYL---LQSTALQELRIYFCDLLEE-- 583 (658)
Q Consensus 512 ~~~~L~~L~L~~~~~L--~~~~~~~~-~~~~~~~~~~L~~L~L~~c~~l~~lp~~~---~~l~~L~~L~l~~c~~l~~-- 583 (658)
.+|+|++|+|+.+.+. .+...... .......||+|+.|.+.+|......+..+ ..+++|++|+|+.|.....
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 5788888887532111 00000000 00111357888888888875432221111 2467888888887753321
Q ss_pred --CcCCCccccCCCCCCCeeeccCCC
Q 044750 584 --LPILEDRKTTDIPRLSSLEIGYCP 607 (658)
Q Consensus 584 --~p~l~~~~~~~~~~L~~L~l~~c~ 607 (658)
++ ..+.++++|+.|++++|.
T Consensus 297 ~~L~----~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 297 RLLL----DHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHH----TTHHHHTTCSEEECCSBB
T ss_pred HHHH----hhcccCCcceEEECCCCc
Confidence 22 123456788888888885
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.09 E-value=9.9e-08 Score=96.60 Aligned_cols=133 Identities=17% Similarity=0.128 Sum_probs=63.6
Q ss_pred ceEEEEEEcCCCCCC-----Ccccc-CCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCccccccc
Q 044750 178 KVRHLGLNFEGGAPL-----PMSIY-GLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREI 251 (658)
Q Consensus 178 ~~~~l~l~~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~l 251 (658)
.++.+++.++.+... ...+. ..++|+.|++++|.... .........+++|+.|+|++|. +.. .....+
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~--~~~~~l~~~L~~L~~L~Ls~n~-l~~---~~~~~L 146 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP--AGLRTLLPVFLRARKLGLQLNS-LGP---EACKDL 146 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH--HHHHHTHHHHHTEEEEECCSSC-CCH---HHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH--HHHHHHHHHHHhccHhhcCCCC-CCH---HHHHHH
Confidence 455566665554421 11111 22566667666665321 1112222344566666663221 000 111112
Q ss_pred cccc-cCCCccceeecCCccccc-----cchhhhcCCCCcEeecCCCCCCC-----CCCcccccccCCceeecCCcc
Q 044750 252 PENI-GKLIHLKYLNLSELCIER-----LPETLCELYNLRKLDIRRCPNLR-----ELPAGIGKLMNMRSLLNGQTY 317 (658)
Q Consensus 252 p~~~-~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~l~~~~ 317 (658)
...+ ...++|++|+|++|.++. ++..+..+++|++|+|++|. ++ .++..+...++|+.|++++|.
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 2222 234566666666666542 44444556666666666665 32 223445555666666666663
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.05 E-value=1.1e-06 Score=89.03 Aligned_cols=138 Identities=13% Similarity=0.034 Sum_probs=95.5
Q ss_pred CCceEEEEEEcCCCCC--CCccccCCCcceEEEeecCCCCccc-ccccccc-cCCCcccEEEEccccCCCCCCccccccc
Q 044750 176 GDKVRHLGLNFEGGAP--LPMSIYGLNRLRTLLIYDKGPSLRS-SILPGLF-SKLACLRALVIRQLSSFSHPSPNFIREI 251 (658)
Q Consensus 176 ~~~~~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~-~~l~~Lr~L~L~~~~~l~~~~~~~~~~l 251 (658)
...++.++++++.+.. .......+++|+.|++++|.+.... ..+...+ ...+.|+.|+|++|. +.. .....+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~---~~~~~l 175 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTA---AGVAVL 175 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHH---HHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CCh---HHHHHH
Confidence 3578999999988753 1112234568999999999754211 1111122 356889999995432 111 223346
Q ss_pred cccccCCCccceeecCCcccc-----ccchhhhcCCCCcEeecCCCCCCC-----CCCcccccccCCceeecCCccc
Q 044750 252 PENIGKLIHLKYLNLSELCIE-----RLPETLCELYNLRKLDIRRCPNLR-----ELPAGIGKLMNMRSLLNGQTYS 318 (658)
Q Consensus 252 p~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~l~~~~~ 318 (658)
+..+..+++|++|+|++|.|+ .++..+...++|++|+|++|. ++ .++..+...++|++|++++|..
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 666788899999999999987 345667788999999999998 44 3444566779999999999953
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.03 E-value=0.00023 Score=72.79 Aligned_cols=110 Identities=11% Similarity=0.150 Sum_probs=66.6
Q ss_pred ccccCCC-cceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc-ccccCCCccceeecCCccc
Q 044750 194 MSIYGLN-RLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP-ENIGKLIHLKYLNLSELCI 271 (658)
Q Consensus 194 ~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~i 271 (658)
.+|.+++ .|+++.+-.+-. ..-...|.++.+|+.+.+... ....++.+. ..|..+.+|+.+.+..+ +
T Consensus 57 ~aF~~~~~~L~sI~iP~svt----~Ig~~AF~~C~~L~~i~~~~n------~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~ 125 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDTVT----EIGSNAFYNCTSLKRVTIQDN------KPSCVKKIGRQAFMFCSELTDIPILDS-V 125 (394)
T ss_dssp TTTTTCCSCCCEEEECTTCC----EECTTTTTTCTTCCEEEEGGG------CCCCCCEECTTTTTTCTTCCBCGGGTT-C
T ss_pred hhccCCCCcCEEEEECCCee----EEhHHHhhCCccCceEeecCC------CCCeeeEechhhchhcccceeeccCCc-c
Confidence 3456664 588888865421 233466888888888888321 112244443 34667788887777654 5
Q ss_pred cccch-hhhcCCCCcEeecCCCCCCCCCC-cccccccCCceeecCCc
Q 044750 272 ERLPE-TLCELYNLRKLDIRRCPNLRELP-AGIGKLMNMRSLLNGQT 316 (658)
Q Consensus 272 ~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~ 316 (658)
+.++. .+..+.+|+.+.+... +..++ ..+....+|+.+.+..+
T Consensus 126 ~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 126 TEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp SEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred ceehhhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 54443 5677888888888643 33333 33556677777777553
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.97 E-value=4.1e-05 Score=78.36 Aligned_cols=142 Identities=14% Similarity=0.123 Sum_probs=88.2
Q ss_pred eEEEEEEcCCCCC-CCccccCCCcceEEEeecCCCCcccccccccccCCCcccEEEEccccCCCCCCcccccccc-cccc
Q 044750 179 VRHLGLNFEGGAP-LPMSIYGLNRLRTLLIYDKGPSLRSSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIP-ENIG 256 (658)
Q Consensus 179 ~~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp-~~~~ 256 (658)
++.+.+... +.. -..+|.+|.+|+.+.+..+........-...|.++..|+.+.+. ..+..++ ..+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~----------~~~~~I~~~aF~ 134 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL----------DSVTEIDSEAFH 134 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG----------TTCSEECTTTTT
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccC----------Cccceehhhhhh
Confidence 556666433 222 34568899999999998764221112234568888888877661 2244444 3467
Q ss_pred CCCccceeecCCccccccc-hhhhcCCCCcEeecCCCCCCCCCCcccccccCCceeecCCcccCccCcCcCCCCCCCCcc
Q 044750 257 KLIHLKYLNLSELCIERLP-ETLCELYNLRKLDIRRCPNLRELPAGIGKLMNMRSLLNGQTYSLKYMPIGISKLTSLRTL 335 (658)
Q Consensus 257 ~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 335 (658)
.+.+|+.+.+..+ +..++ ..+..+.+|+.+.+.++ +..+......-.+|+.+.+... ....-...+..+.++...
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTI 210 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred hhcccccccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEECCc-ccccccchhhhcccccee
Confidence 8899999999754 44443 46778999999999764 5555554444567888877654 222222335555555544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.82 E-value=2.4e-06 Score=81.05 Aligned_cols=78 Identities=19% Similarity=0.177 Sum_probs=45.3
Q ss_pred CCCccceeecCCcccccc---chhhhcCCCCcEeecCCCCCCCCCCccccccc--CCceeecCCcccCccCcC-------
Q 044750 257 KLIHLKYLNLSELCIERL---PETLCELYNLRKLDIRRCPNLRELPAGIGKLM--NMRSLLNGQTYSLKYMPI------- 324 (658)
Q Consensus 257 ~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~--~L~~L~l~~~~~~~~~p~------- 324 (658)
++++|++|+|++|.|+.+ |..++.+++|+.|+|++|. +..+ ..+..+. +|+.|++++|.....+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 456677777777766543 3445567777777777666 4433 2344444 677777777654443332
Q ss_pred cCCCCCCCCccC
Q 044750 325 GISKLTSLRTLE 336 (658)
Q Consensus 325 ~i~~l~~L~~L~ 336 (658)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245566666665
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.78 E-value=3.3e-05 Score=77.33 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=25.6
Q ss_pred CCccceeecCCcccc-ccchhhh---cCCCCcEeecCCCCCCCC-----CCcccccccCCceeecCCc
Q 044750 258 LIHLKYLNLSELCIE-RLPETLC---ELYNLRKLDIRRCPNLRE-----LPAGIGKLMNMRSLLNGQT 316 (658)
Q Consensus 258 l~~L~~L~L~~~~i~-~lp~~i~---~L~~L~~L~L~~~~~~~~-----lp~~i~~L~~L~~L~l~~~ 316 (658)
+++|++|+|++|.+. ..+..+. .+++|++|+|+.|. ++. ++..+..+++|+.|++++|
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCC
Confidence 455555555555543 1111221 24455555555443 221 2333334455555555544
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.75 E-value=8.1e-06 Score=73.56 Aligned_cols=117 Identities=15% Similarity=0.071 Sum_probs=68.5
Q ss_pred cccCCCcceEEEeecC-CCCccc-ccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCcccc
Q 044750 195 SIYGLNRLRTLLIYDK-GPSLRS-SILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIE 272 (658)
Q Consensus 195 ~~~~~~~L~~L~l~~~-~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~ 272 (658)
.+...+.|++|++++| .+.-.. ..+...+...+.|++|+|++|. +.. .....+...+...++|++|+|++|.|+
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~---~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SND---PVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCH---HHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CCh---HHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3456777888888777 543110 1122345566778888884332 111 112234455556677888888888776
Q ss_pred c-----cchhhhcCCCCcEeec--CCCCCCCC-----CCcccccccCCceeecCCc
Q 044750 273 R-----LPETLCELYNLRKLDI--RRCPNLRE-----LPAGIGKLMNMRSLLNGQT 316 (658)
Q Consensus 273 ~-----lp~~i~~L~~L~~L~L--~~~~~~~~-----lp~~i~~L~~L~~L~l~~~ 316 (658)
. +...+...+.|++|+| ++|. ++. +...+...+.|++|++++|
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 2 4556666777888888 6665 331 3334455567777777776
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.69 E-value=6.1e-06 Score=74.38 Aligned_cols=94 Identities=11% Similarity=0.068 Sum_probs=70.3
Q ss_pred cccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCcccc-----ccchhhhcCCCCcEeecCCCCC
Q 044750 220 PGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIE-----RLPETLCELYNLRKLDIRRCPN 294 (658)
Q Consensus 220 ~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~ 294 (658)
...+...+.|+.|+|++|..+.. .....+...+...++|++|+|++|.|. .+...+...++|++|+|++|.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~---~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~- 104 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPV---PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF- 104 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCH---HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-
T ss_pred HHHHhcCCCCCEEEecCCCCCCH---HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-
Confidence 34567889999999965533333 344556677778899999999999987 355566777899999999997
Q ss_pred CCC-----CCcccccccCCceeec--CCcc
Q 044750 295 LRE-----LPAGIGKLMNMRSLLN--GQTY 317 (658)
Q Consensus 295 ~~~-----lp~~i~~L~~L~~L~l--~~~~ 317 (658)
++. +...+...+.|++|++ ++|.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 442 4556777788999999 6674
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.62 E-value=4.2e-05 Score=72.49 Aligned_cols=80 Identities=19% Similarity=0.136 Sum_probs=57.5
Q ss_pred cCCCcccEEEEccccCCCCCCcccccc---ccccccCCCccceeecCCccccccchhhhcCC--CCcEeecCCCCCCCCC
Q 044750 224 SKLACLRALVIRQLSSFSHPSPNFIRE---IPENIGKLIHLKYLNLSELCIERLPETLCELY--NLRKLDIRRCPNLREL 298 (658)
Q Consensus 224 ~~l~~Lr~L~L~~~~~l~~~~~~~~~~---lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~~~~~l 298 (658)
.+++.|+.|+| ++ +.+.. +|..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.....+
T Consensus 167 ~~l~~L~~L~L------s~---N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 167 ENIPELLSLNL------SN---NRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HHCTTCCEEEC------TT---SCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred hhCCCCCEEEC------CC---CCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCcccc
Confidence 56788999999 44 44443 445667888899999999988866 3455555 8899999888854555
Q ss_pred Cc-------ccccccCCceeec
Q 044750 299 PA-------GIGKLMNMRSLLN 313 (658)
Q Consensus 299 p~-------~i~~L~~L~~L~l 313 (658)
|. .+..+++|+.||-
T Consensus 237 ~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEESS
T ss_pred CcchhHHHHHHHHCcccCeECC
Confidence 52 3567888888873
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.52 E-value=0.0054 Score=62.04 Aligned_cols=81 Identities=12% Similarity=0.150 Sum_probs=41.5
Q ss_pred CCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCC-ccccCCCCcceEEEccCCCCCCCcCCCcc
Q 044750 512 AFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALP-DYLLQSTALQELRIYFCDLLEELPILEDR 590 (658)
Q Consensus 512 ~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~p~l~~~ 590 (658)
.+.+|+.+.+.. +++.+. ...+..+++|+.+.+.++ .++.++ ..+.++++|+.+.|..+ ++.+.. .
T Consensus 261 ~~~~l~~i~l~~--~i~~i~-----~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~---~ 327 (379)
T 4h09_A 261 NCTALKTLNFYA--KVKTVP-----YLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA--LKTIQV---Y 327 (379)
T ss_dssp TCTTCCEEEECC--CCSEEC-----TTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECT---T
T ss_pred eeehhccccccc--cceecc-----cccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCcc--ccEEHH---H
Confidence 455666665543 122211 234455666666666554 344343 23455666666666532 333331 3
Q ss_pred ccCCCCCCCeeeccC
Q 044750 591 KTTDIPRLSSLEIGY 605 (658)
Q Consensus 591 ~~~~~~~L~~L~l~~ 605 (658)
.+.+|.+|+.+.+..
T Consensus 328 aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 328 AFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTCTTCCCCCCCT
T ss_pred HhhCCCCCCEEEECC
Confidence 455666666666643
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.98 E-value=0.024 Score=57.28 Aligned_cols=105 Identities=17% Similarity=0.164 Sum_probs=74.4
Q ss_pred ccCCCCcceeeecCCccccccccccccccccCcCcccceeeeeCCCCCCCCCc-cccCCCCcceEEEccCCCCCCCcCCC
Q 044750 510 VTAFPKLKSLDIGGMEELEEWNYRITRKENISIMPRLSSLWIRGCPKLKALPD-YLLQSTALQELRIYFCDLLEELPILE 588 (658)
Q Consensus 510 ~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~~p~l~ 588 (658)
+..+..|+.+.+... ++.+. ...+..+.+|+.+.+.. .+..++. .+..+++|+.+.+.++. ++.++.
T Consensus 236 f~~~~~L~~i~lp~~--v~~I~-----~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~-- 303 (379)
T 4h09_A 236 FYGMKALDEIAIPKN--VTSIG-----SFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSA-IETLEP-- 303 (379)
T ss_dssp TTTCSSCCEEEECTT--CCEEC-----TTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTT-CCEECT--
T ss_pred ccCCccceEEEcCCC--ccEeC-----ccccceeehhccccccc--cceeccccccccccccccccccccc-cceehh--
Confidence 346788888888653 33322 34566788999999865 3555544 45678999999998653 444442
Q ss_pred ccccCCCCCCCeeeccCCCCccccCC-CCCCCCCccEEEEec
Q 044750 589 DRKTTDIPRLSSLEIGYCPKLKVLPN-YLLRTTTLQELIIHR 629 (658)
Q Consensus 589 ~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~ 629 (658)
..+.+|.+|+.+.+... ++.+.. .+.+|.+|+.+.+..
T Consensus 304 -~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 304 -RVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp -TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred -hhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECC
Confidence 56788999999999753 777754 678899999988843
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.94 E-value=0.077 Score=43.90 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=18.0
Q ss_pred ccceeecCCccccccchh-hhcCCCCcEeecCCCC
Q 044750 260 HLKYLNLSELCIERLPET-LCELYNLRKLDIRRCP 293 (658)
Q Consensus 260 ~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 293 (658)
+|++|+|++|.|+.+|.. +..+++|++|+|++|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 455555555555555542 3445555555555544
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.25 E-value=0.049 Score=48.49 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=21.8
Q ss_pred ccccccCCCccceeecCCcccc-----ccchhhhcCCCCcEeecCCCC
Q 044750 251 IPENIGKLIHLKYLNLSELCIE-----RLPETLCELYNLRKLDIRRCP 293 (658)
Q Consensus 251 lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~ 293 (658)
+-..+..-..|+.|+|++|.|. .+...+..-+.|++|+|++|.
T Consensus 62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3334444455666666666554 233333444556666665554
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.23 E-value=0.11 Score=42.85 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=43.0
Q ss_pred ceeecCCcccc--ccchhhhcCCCCcEeecCCCCCCCCCCcc-cccccCCceeecCCcc
Q 044750 262 KYLNLSELCIE--RLPETLCELYNLRKLDIRRCPNLRELPAG-IGKLMNMRSLLNGQTY 317 (658)
Q Consensus 262 ~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~ 317 (658)
..++.+++.++ .+|..+. .+|++|+|++|. +..+|.+ +..+++|+.|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 47888888888 8886542 579999999998 7778765 5779999999999984
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.66 E-value=0.17 Score=45.04 Aligned_cols=117 Identities=13% Similarity=0.035 Sum_probs=70.5
Q ss_pred ccCCCcceEEEeecC-CCCcc-cccccccccCCCcccEEEEccccCCCCCCccccccccccccCCCccceeecCCcccc-
Q 044750 196 IYGLNRLRTLLIYDK-GPSLR-SSILPGLFSKLACLRALVIRQLSSFSHPSPNFIREIPENIGKLIHLKYLNLSELCIE- 272 (658)
Q Consensus 196 ~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~l~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~- 272 (658)
..+-+.|+.|++.++ .+.-. ...+-..+..-..|+.|+|++|.- .+ .....+...+..-+.|++|+|++|.|+
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~i-gd---~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI-SD---SEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC-BH---HHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCC-Ch---HHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 345678888988875 43210 011233456667899999944321 11 223345555666688999999999987
Q ss_pred ----ccchhhhcCCCCcEeecCCCCC--CC-----CCCcccccccCCceeecCCc
Q 044750 273 ----RLPETLCELYNLRKLDIRRCPN--LR-----ELPAGIGKLMNMRSLLNGQT 316 (658)
Q Consensus 273 ----~lp~~i~~L~~L~~L~L~~~~~--~~-----~lp~~i~~L~~L~~L~l~~~ 316 (658)
.+-..+..-+.|+.|+|++|.. ++ .+-..+..-+.|+.|+++.+
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 3334455556799999987642 22 12223344556777777654
No 169
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=70.66 E-value=12 Score=36.38 Aligned_cols=119 Identities=13% Similarity=0.044 Sum_probs=66.2
Q ss_pred hhHHHHHHhhCC-HHHHHHHHhhhcCCCCHHHHHH-HHhccccccccccCcch-HHHHhhccCCCCCCchhhHHhhhcCC
Q 044750 4 AIVSSLLDQLKS-IAQDQVIGNLLRSKCTVKEWQR-ILESEMWKVEEIRKGLL-APLLLSYNDLPSNSMVKQCFSYCAVF 80 (658)
Q Consensus 4 ~~~~~i~~~c~g-Plai~~ig~~L~~~~~~~~W~~-~~~~~~~~~~~~~~~i~-~~L~~sY~~L~~~~~~k~cFl~~~~f 80 (658)
+.+.+|++.||| |+++..++..+....+...|-. +.+. ....+. .+-.+.+ + +. ..+..+..+|.
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~l~~-~-~~--~~~~~l~~la~- 293 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV-------AKGLIMGELEELRR-R-SP--RYVDILRAIAL- 293 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH-------HHHHHHHHHHHHHH-H-CH--HHHHHHHHHHT-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH-------HHHHHHHHHHHHHh-C-Ch--hHHHHHHHHHh-
Confidence 567889999999 9999999876543223322221 1110 000011 1112222 2 55 78888888887
Q ss_pred CCCceeCHHHHHHHHHHcCCcCCCcchhHHHHHHHHHHHHHhccCceeeeecCCCCeeceEEc-CHHHHHHH
Q 044750 81 PKDHYMHKKELIDMWMAQGYLNAEEDEEMEMVGEEYFNILATHSFFQEFETYGGDNEFMRCKM-HDIVHDFA 151 (658)
Q Consensus 81 p~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~m-hdl~~d~~ 151 (658)
+ ..+...+........ - +. .......+++.|++++++.... + .+.+ |.+++++.
T Consensus 294 --g-~~~~~~l~~~~~~~~-~-~~----~~~~~~~~l~~L~~~gli~~~~----~----~y~~~~p~~~~~~ 348 (350)
T 2qen_A 294 --G-YNRWSLIRDYLAVKG-T-KI----PEPRLYALLENLKKMNWIVEED----N----TYKIADPVVATVL 348 (350)
T ss_dssp --T-CCSHHHHHHHHHHTT-C-CC----CHHHHHHHHHHHHHTTSEEEET----T----EEEESSHHHHHHH
T ss_pred --C-CCCHHHHHHHHHHHh-C-CC----CHHHHHHHHHHHHhCCCEEecC----C----EEEEecHHHHHHH
Confidence 2 245566655542211 0 11 1234668899999999997652 1 3444 66777653
No 170
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=64.96 E-value=20 Score=34.76 Aligned_cols=116 Identities=9% Similarity=-0.006 Sum_probs=66.1
Q ss_pred HHHHHhhCC-HHHHHHHHhhhcCCCCHHHHHHH-HhccccccccccCcchHHHH-hhcc--CCCCCCchhhHHhhhcCCC
Q 044750 7 SSLLDQLKS-IAQDQVIGNLLRSKCTVKEWQRI-LESEMWKVEEIRKGLLAPLL-LSYN--DLPSNSMVKQCFSYCAVFP 81 (658)
Q Consensus 7 ~~i~~~c~g-Plai~~ig~~L~~~~~~~~W~~~-~~~~~~~~~~~~~~i~~~L~-~sY~--~L~~~~~~k~cFl~~~~fp 81 (658)
.+|+++||| |+++..++..+....+...|-.- .+. ....+...+. +.|+ .|+. ..|..+..+|.
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~l~~--~~~~~l~~la~-- 301 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEY-------AKKLILKEFENFLHGREIARK--RYLNIMRTLSK-- 301 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH-------HHHHHHHHHHHHHTTCGGGHH--HHHHHHHHHTT--
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHH-------HHHHHHHHHHHHhhccccccH--HHHHHHHHHHc--
Confidence 689999999 99999999887543344444221 110 0000111121 2222 5677 78899988887
Q ss_pred CCceeCHHHHHHHHH-HcCCcCCCcchhHHHHHHHHHHHHHhccCceeeeecCCCCeeceEE-cCHHHHHH
Q 044750 82 KDHYMHKKELIDMWM-AQGYLNAEEDEEMEMVGEEYFNILATHSFFQEFETYGGDNEFMRCK-MHDIVHDF 150 (658)
Q Consensus 82 ~~~~i~~~~Li~~w~-~~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~-mhdl~~d~ 150 (658)
+. +...+..... ..|. + -.......+++.|++++++.... + .++ .|.++++.
T Consensus 302 -g~--~~~~l~~~~~~~~g~--~----~~~~~~~~~L~~L~~~gli~~~~----~----~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 -CG--KWSDVKRALELEEGI--E----ISDSEIYNYLTQLTKHSWIIKEG----E----KYCPSEPLISLA 355 (357)
T ss_dssp -CB--CHHHHHHHHHHHHCS--C----CCHHHHHHHHHHHHHTTSEEESS----S----CEEESSHHHHHH
T ss_pred -CC--CHHHHHHHHHHhcCC--C----CCHHHHHHHHHHHHhCCCEEecC----C----EEEecCHHHHHh
Confidence 22 5555544321 1131 0 01234567899999999997642 1 245 47777764
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=50.29 E-value=17 Score=36.36 Aligned_cols=111 Identities=6% Similarity=-0.055 Sum_probs=62.5
Q ss_pred hhhHHHHHHhhC------C-HHHHHHHHh-hhc-----CC--CCHHHHHHHHhccccccccccCcc-hHHHHhhccCCCC
Q 044750 3 HAIVSSLLDQLK------S-IAQDQVIGN-LLR-----SK--CTVKEWQRILESEMWKVEEIRKGL-LAPLLLSYNDLPS 66 (658)
Q Consensus 3 ~~~~~~i~~~c~------g-Plai~~ig~-~L~-----~~--~~~~~W~~~~~~~~~~~~~~~~~i-~~~L~~sY~~L~~ 66 (658)
.+.+..|++.|+ | |..+..+.. +.. +. -+.+.+..+.... . ...+.-+++.||.
T Consensus 239 ~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~~l~~l~~ 308 (412)
T 1w5s_A 239 PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN----------EAASIQTHELEALSI 308 (412)
T ss_dssp HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----------------CCSSSSSCH
T ss_pred hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----------hccchHHHHHHcCCH
Confidence 356788999999 9 954444432 221 11 1234444443311 1 2445667888998
Q ss_pred CCchhhHHhhhcCCC--CCceeCHHHHHHHHH--H---cCCcCCCcchhHHHHHHHHHHHHHhccCceeee
Q 044750 67 NSMVKQCFSYCAVFP--KDHYMHKKELIDMWM--A---QGYLNAEEDEEMEMVGEEYFNILATHSFFQEFE 130 (658)
Q Consensus 67 ~~~~k~cFl~~~~fp--~~~~i~~~~Li~~w~--~---~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 130 (658)
+.|.++..++.+. .+..+...++...+. + .|. .+. .......+++.|++.+++....
T Consensus 309 --~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 309 --HELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPR----GYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp --HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCC----CHHHHHHHHHHHHHTTSEEEEC
T ss_pred --HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCC----CHHHHHHHHHHHHhCCCEEeec
Confidence 8899888888653 233566666655442 1 121 111 1234567899999999997654
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=24.46 E-value=41 Score=32.11 Aligned_cols=35 Identities=9% Similarity=0.085 Sum_probs=20.0
Q ss_pred HHHHcCCcCCC-cchhHHHHHHHHHH-HHHhccCcee
Q 044750 94 MWMAQGYLNAE-EDEEMEMVGEEYFN-ILATHSFFQE 128 (658)
Q Consensus 94 ~w~~~g~~~~~-~~~~~~~~~~~~~~-~L~~~~ll~~ 128 (658)
+-+..|++... .+..+.+.|..|++ ++.+++|+|+
T Consensus 288 ~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 288 YLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 45667887543 33566788888887 7888888774
Done!