Query 044754
Match_columns 172
No_of_seqs 153 out of 798
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:27:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882 Tetraspanin family int 99.9 1E-23 2.2E-28 172.1 7.2 139 3-141 7-169 (237)
2 PF00335 Tetraspannin: Tetrasp 99.5 3.1E-16 6.8E-21 122.5 -3.3 132 4-135 1-150 (221)
3 cd03154 TM4SF3_like_LEL Tetras 94.5 0.0044 9.5E-08 43.6 -2.0 56 90-145 1-72 (100)
4 cd03161 TM4SF2_6_like_LEL Tetr 90.2 0.033 7.2E-07 39.1 -2.2 30 118-147 31-74 (104)
5 cd03163 TM4SF8_like_LEL Tetras 89.5 0.036 7.7E-07 39.2 -2.4 29 118-146 32-78 (105)
6 cd03159 TM4SF9_like_LEL Tetras 88.9 0.033 7.2E-07 40.6 -3.0 16 118-133 31-51 (121)
7 PF05915 DUF872: Eukaryotic pr 86.3 2 4.3E-05 31.7 5.1 48 10-58 44-91 (115)
8 PF04156 IncA: IncA protein; 84.6 2.5 5.4E-05 33.1 5.3 20 11-30 6-25 (191)
9 cd03164 CD53_like_LEL Tetraspa 84.4 0.084 1.8E-06 36.0 -2.8 22 119-140 32-60 (86)
10 cd03160 CD37_CD82_like_LEL Tet 84.1 0.12 2.5E-06 37.3 -2.3 15 119-133 36-55 (117)
11 cd03158 penumbra_like_LEL Tetr 84.1 0.099 2.1E-06 37.9 -2.7 15 119-133 32-51 (119)
12 PRK12585 putative monovalent c 76.9 37 0.00079 27.4 9.4 53 10-62 6-59 (197)
13 KOG4433 Tweety transmembrane/c 75.8 6.4 0.00014 35.9 5.4 42 43-84 209-251 (526)
14 cd07912 Tweety_N N-terminal do 74.9 5.4 0.00012 35.8 4.7 28 52-79 218-245 (418)
15 PF04103 CD20: CD20-like famil 73.2 1.1 2.4E-05 33.1 0.0 69 15-85 5-73 (150)
16 cd03156 uroplakin_I_like_LEL T 72.0 0.2 4.4E-06 35.4 -4.1 15 119-133 35-54 (114)
17 COG4993 Gcd Glucose dehydrogen 71.9 12 0.00026 35.5 6.3 62 10-82 4-65 (773)
18 cd03157 TM4SF12_like_LEL Tetra 71.5 1.9 4.1E-05 30.9 0.9 29 119-147 35-76 (103)
19 PF11297 DUF3098: Protein of u 69.8 14 0.00031 24.9 4.7 23 12-34 6-28 (69)
20 cd03162 peripherin_like_LEL Te 69.6 0.6 1.3E-05 35.7 -2.2 15 119-133 37-56 (143)
21 PF03729 DUF308: Short repeat 69.2 26 0.00057 22.2 7.1 47 19-69 2-48 (72)
22 cd03155 CD151_like_LEL Tetrasp 66.6 3.3 7.2E-05 29.1 1.3 15 119-133 35-54 (110)
23 cd03165 NET-5_like_LEL Tetrasp 65.5 2.1 4.5E-05 29.5 0.0 29 119-147 34-75 (98)
24 KOG4753 Predicted membrane pro 65.0 3.8 8.1E-05 30.5 1.3 45 14-58 55-99 (124)
25 PF11127 DUF2892: Protein of u 64.7 25 0.00055 22.6 5.2 42 17-65 14-55 (66)
26 PF09323 DUF1980: Domain of un 64.4 25 0.00055 27.5 6.1 25 46-70 35-59 (182)
27 cd03152 CD9_LEL Tetraspanin, e 61.3 5.1 0.00011 27.0 1.4 21 119-139 34-59 (84)
28 cd03167 oculospanin_like_LEL T 60.9 5.1 0.00011 29.0 1.4 16 118-133 31-51 (120)
29 cd03127 tetraspanin_LEL Tetras 56.7 3 6.4E-05 27.7 -0.4 24 118-141 31-64 (90)
30 PF02932 Neur_chan_memb: Neuro 56.2 59 0.0013 23.9 6.7 36 64-99 50-85 (237)
31 PF06770 Arif-1: Actin-rearran 55.8 95 0.0021 25.1 7.9 52 15-66 4-64 (196)
32 PF10724 DUF2516: Protein of u 55.0 77 0.0017 22.8 7.0 27 7-33 3-29 (100)
33 COG3247 HdeD Uncharacterized c 54.1 60 0.0013 25.9 6.6 51 15-69 21-71 (185)
34 PF06341 DUF1056: Protein of u 53.1 64 0.0014 21.3 6.2 48 3-59 5-52 (63)
35 cd03166 CD63_LEL Tetraspanin, 52.0 6.1 0.00013 27.2 0.5 30 118-147 31-75 (99)
36 PRK07946 putative monovalent c 49.7 41 0.0009 26.4 4.9 47 13-60 4-50 (163)
37 PF04906 Tweety: Tweety; Inte 49.6 6.3 0.00014 35.0 0.4 30 51-80 194-223 (406)
38 PF11384 DUF3188: Protein of u 49.6 34 0.00074 21.4 3.6 21 40-60 22-42 (49)
39 PF03779 SPW: SPW repeat; Int 47.8 39 0.00085 21.1 3.7 35 24-58 6-43 (51)
40 PF09971 DUF2206: Predicted me 47.0 92 0.002 27.4 7.2 39 58-98 198-242 (367)
41 PF07086 DUF1352: Protein of u 45.3 1.6E+02 0.0034 23.6 9.8 83 9-95 40-123 (186)
42 PF04156 IncA: IncA protein; 45.0 83 0.0018 24.3 6.1 15 46-60 11-25 (191)
43 PF15048 OSTbeta: Organic solu 44.8 31 0.00067 25.9 3.3 26 6-31 36-61 (125)
44 PRK08389 putative monovalent c 43.5 92 0.002 22.6 5.7 48 15-63 4-52 (114)
45 PF12304 BCLP: Beta-casein lik 40.8 1.3E+02 0.0027 24.2 6.4 53 11-63 42-94 (188)
46 PF06772 LtrA: Bacterial low t 39.1 2.5E+02 0.0053 24.0 10.4 60 9-68 251-310 (354)
47 PF06724 DUF1206: Domain of Un 38.8 33 0.00072 22.6 2.5 21 14-34 48-68 (73)
48 PRK05715 NADH:ubiquinone oxido 37.1 1.3E+02 0.0028 21.0 5.5 73 17-95 8-81 (100)
49 PF13706 PepSY_TM_3: PepSY-ass 36.0 64 0.0014 18.6 3.1 24 44-67 10-33 (37)
50 PF04854 DUF624: Protein of un 35.7 38 0.00082 22.3 2.4 20 10-29 2-24 (77)
51 PRK10209 acid-resistance membr 35.3 2.2E+02 0.0047 22.3 7.7 49 15-67 23-71 (190)
52 TIGR00941 2a6301s03 Multicompo 33.1 1.2E+02 0.0026 21.9 4.8 47 13-60 2-48 (104)
53 KOG3950 Gamma/delta sarcoglyca 33.0 55 0.0012 27.6 3.4 30 69-98 34-63 (292)
54 KOG4054 Uncharacterized conser 32.8 2.5E+02 0.0055 22.3 8.9 80 9-91 40-119 (183)
55 PF05640 NKAIN: Na,K-Atpase In 32.1 1.9E+02 0.004 23.5 6.2 50 43-92 33-82 (200)
56 PRK02542 photosystem I assembl 31.8 1E+02 0.0022 24.8 4.6 66 2-79 21-87 (188)
57 PF02392 Ycf4: Ycf4; InterPro 31.5 1E+02 0.0022 24.6 4.5 65 2-78 14-79 (180)
58 CHL00015 ndhE NADH dehydrogena 30.9 1.4E+02 0.0031 21.0 4.9 75 18-95 8-82 (101)
59 PF13903 Claudin_2: PMP-22/EMP 30.7 2.2E+02 0.0047 20.8 6.4 29 46-74 74-103 (172)
60 PF06749 DUF1218: Protein of u 30.7 1.2E+02 0.0026 21.2 4.5 31 3-33 34-64 (97)
61 PF12666 PrgI: PrgI family pro 29.3 1.2E+02 0.0027 20.6 4.3 10 89-98 59-68 (93)
62 PF06166 DUF979: Protein of un 29.0 1E+02 0.0023 26.5 4.5 53 13-65 2-69 (308)
63 CHL00036 ycf4 photosystem I as 28.6 1.3E+02 0.0028 24.1 4.7 63 2-78 17-82 (184)
64 PRK12659 putative monovalent c 27.8 1.5E+02 0.0033 21.7 4.7 47 13-60 2-48 (117)
65 KOG4556 Predicted membrane pro 27.7 2.6E+02 0.0056 22.4 6.2 47 43-89 30-76 (205)
66 PF08507 COPI_assoc: COPI asso 27.1 1.9E+02 0.0041 21.3 5.3 20 14-33 8-27 (136)
67 PRK08600 putative monovalent c 26.9 1.5E+02 0.0033 21.7 4.5 46 14-60 3-48 (113)
68 PF15471 TMEM171: Transmembran 25.1 67 0.0014 27.5 2.6 50 8-57 23-78 (319)
69 KOG3646 Acetylcholine receptor 24.7 1.7E+02 0.0037 26.8 5.3 92 7-100 235-326 (486)
70 COG1971 Predicted membrane pro 24.2 3.8E+02 0.0082 21.5 8.4 43 46-89 139-181 (190)
71 PRK12658 putative monovalent c 24.1 1.5E+02 0.0032 22.2 4.1 47 13-60 2-48 (125)
72 PF11381 DUF3185: Protein of u 23.7 71 0.0015 20.8 2.0 15 46-60 44-58 (59)
73 COG3374 Predicted membrane pro 23.4 1.9E+02 0.0042 23.3 4.8 19 42-60 43-61 (197)
74 PF05478 Prominin: Prominin; 22.8 80 0.0017 30.6 3.0 28 70-97 137-164 (806)
75 PF11947 DUF3464: Protein of u 22.5 3.1E+02 0.0068 21.2 5.7 45 14-61 70-114 (153)
76 PRK12660 putative monovalent c 21.8 3.2E+02 0.0069 19.8 7.9 49 13-63 2-51 (114)
77 PF15345 TMEM51: Transmembrane 21.8 1.3E+02 0.0028 25.0 3.6 28 43-70 61-88 (233)
78 PRK09094 putative monovalent c 21.8 2.1E+02 0.0046 21.0 4.5 45 15-60 4-48 (114)
79 KOG4812 Golgi-associated prote 21.5 95 0.0021 26.0 2.8 29 41-69 224-252 (262)
80 PRK10209 acid-resistance membr 21.2 4.1E+02 0.0088 20.8 7.7 23 47-69 109-131 (190)
81 PF13572 DUF4134: Domain of un 21.1 3.2E+02 0.0069 19.5 6.7 24 5-28 37-60 (98)
82 PF09788 Tmemb_55A: Transmembr 20.9 1.7E+02 0.0036 24.7 4.2 47 14-60 199-245 (256)
83 PRK10263 DNA translocase FtsK; 20.6 1E+03 0.022 25.1 10.4 27 5-32 72-98 (1355)
84 PF04790 Sarcoglycan_1: Sarcog 20.6 1.2E+02 0.0026 25.5 3.3 36 63-98 5-40 (264)
No 1
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=99.89 E-value=1e-23 Score=172.06 Aligned_cols=139 Identities=18% Similarity=0.365 Sum_probs=112.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc------chhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHH
Q 044754 3 RCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECD------KFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYL 76 (172)
Q Consensus 3 ~~~~~ll~~~N~l~~l~G~~ll~~Giw~~~~~~~~~~------~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~ 76 (172)
++.||+++++|+++|++|++++++|+|+..++..... ....+.++++|.+++++|++||+||+|||+|+|.+|+
T Consensus 7 ~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~~~~~~~~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~ 86 (237)
T KOG3882|consen 7 SCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLESDFLVPAYILIAVGGVVFLVGFLGCCGALRESRCLLLSYF 86 (237)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhccccchhcchhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHH
Confidence 5899999999999999999999999999988542111 1123457899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhheeeecCCCCccC---CCcccccccccc----chhHHhhhc-----CCcCCCcc------cCcc
Q 044754 77 VLLMLIIVGVISLTVFTLAVTNRGSGQKS---PGKAYKEYRMDD----YSSWLRKRM-----NDEENWRK------IKSC 138 (172)
Q Consensus 77 ~~l~ll~l~el~~~i~~~~~~~~~~~~~~---~~~~~~~y~~~~----~~~~lQ~~~-----~~~~dW~~------~~sC 138 (172)
+++++++++|++.++++++++++.+++.. ..+.++.|+.++ ..|.+|+++ ++++||.. |.||
T Consensus 87 ~~l~l~~i~e~~~~i~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~d~~Q~~~~CCG~~~~~~~~~~~~~~vP~SC 166 (237)
T KOG3882|consen 87 ILLLLLFIAELAAGILAFVFRDSLRDELEEQLLKSIWNNYSSDPDLGEAWDKLQRELKCCGVNGYSDYFNCSSNNVPPSC 166 (237)
T ss_pred HHHHHHHHHHHHHHHHhheeHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhccCCcCCCchHHhcCCCCCCCccc
Confidence 99999999999999999999887665432 235556676554 358899986 78888843 5678
Q ss_pred ccC
Q 044754 139 FVA 141 (172)
Q Consensus 139 ~~~ 141 (172)
+.+
T Consensus 167 C~~ 169 (237)
T KOG3882|consen 167 CKR 169 (237)
T ss_pred CCC
Confidence 764
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=99.53 E-value=3.1e-16 Score=122.52 Aligned_cols=132 Identities=22% Similarity=0.493 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhh-cccccc-----ccchhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHH
Q 044754 4 CCNSLFVVLNVVTFLLSVFIVWFGVLLI-TTEATE-----CDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLV 77 (172)
Q Consensus 4 ~~~~ll~~~N~l~~l~G~~ll~~Giw~~-~~~~~~-----~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~ 77 (172)
|.|+++.++|++++++|++++++|+|+. .+...+ .........+.+|+++++++++|++|+.|||++++..|.+
T Consensus 1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~ 80 (221)
T PF00335_consen 1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSSSFISYVIIILIFIGIFILIISFLGCIGACRKNRCLLIIYII 80 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccc
Confidence 5789999999999999999999999993 222111 1112234456799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhheeeecCCCCccCCC---ccccccc----cccchhHHhhhc-----CCcCCCccc
Q 044754 78 LLMLIIVGVISLTVFTLAVTNRGSGQKSPG---KAYKEYR----MDDYSSWLRKRM-----NDEENWRKI 135 (172)
Q Consensus 78 ~l~ll~l~el~~~i~~~~~~~~~~~~~~~~---~~~~~y~----~~~~~~~lQ~~~-----~~~~dW~~~ 135 (172)
++++++++|++.+++++..+++........ ...+.+. ..+..|.+|+++ ++++||...
T Consensus 81 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iq~~~~CCG~~~~~d~~~~ 150 (221)
T PF00335_consen 81 LLILLFVLELVVGIVAFSYRDQLNSSLKDGLSLRCMKSYNSNESFSEAWDNIQEKFECCGVNSPDDWFTS 150 (221)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHSSTT-CHHHHHHHHHHHHHT--SSTTCHHHHHH
T ss_pred chhhHHHHHHHHHHhhhhccccccccccccccchhhhccccccchhhheecccccccccCCCCCcccccc
Confidence 999999999999999999887654322110 0011111 111236788886 688888754
No 3
>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Probab=94.49 E-value=0.0044 Score=43.56 Aligned_cols=56 Identities=9% Similarity=-0.007 Sum_probs=33.7
Q ss_pred HhhheeeecCCCCcc--CCCccccccccc-----cchhHHhhhc-----CCcCCCc---ccCcc-ccCCCcC
Q 044754 90 TVFTLAVTNRGSGQK--SPGKAYKEYRMD-----DYSSWLRKRM-----NDEENWR---KIKSC-FVATNIC 145 (172)
Q Consensus 90 ~i~~~~~~~~~~~~~--~~~~~~~~y~~~-----~~~~~lQ~~~-----~~~~dW~---~~~sC-~~~~~~C 145 (172)
||++|+++++....+ ...+.+++|..+ +..|.+|+++ +++.||. .|.|| +.....|
T Consensus 1 gi~~~v~r~~i~~~i~~~~~~~i~~y~~~~~~~~~~~d~lQ~~l~CCG~~~~~d~~~~~vP~SCcc~~~~~c 72 (100)
T cd03154 1 GIVGAVYKPKIENELKEKNTKLLSLLGQNAKSVKKSLEKFQKELKCCGLVNGADDWGNDIPASCNCTTTQSD 72 (100)
T ss_pred CEEEEEeHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCCCCchhhccCCCCCCCcCCCCCCC
Confidence 578889988765433 123455555422 2248899997 5666663 35788 4444445
No 4
>cd03161 TM4SF2_6_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.
Probab=90.19 E-value=0.033 Score=39.08 Aligned_cols=30 Identities=17% Similarity=0.345 Sum_probs=21.2
Q ss_pred chhHHhhhc-----CCcCCCc---------ccCccccCCCcCcc
Q 044754 118 YSSWLRKRM-----NDEENWR---------KIKSCFVATNICSD 147 (172)
Q Consensus 118 ~~~~lQ~~~-----~~~~dW~---------~~~sC~~~~~~C~~ 147 (172)
..|.+|+++ ++++||. .|.||+.....|..
T Consensus 31 ~~d~iQ~~l~CCG~~~~~Dw~~~~~~~~~~vP~SCC~~~~~C~~ 74 (104)
T cd03161 31 AVDTVQRTLHCCGVENYTDWLNSPYFLEKGIPLSCCKNRSDCSP 74 (104)
T ss_pred HHHHHHhcCcCcCCCChhhhhccccccCCCcCcccccCCCCCCc
Confidence 358899987 7899995 25688755446753
No 5
>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.
Probab=89.54 E-value=0.036 Score=39.17 Aligned_cols=29 Identities=17% Similarity=0.525 Sum_probs=20.3
Q ss_pred chhHHhhhc-----CCcCCCc------------ccCccccC-CCcCc
Q 044754 118 YSSWLRKRM-----NDEENWR------------KIKSCFVA-TNICS 146 (172)
Q Consensus 118 ~~~~lQ~~~-----~~~~dW~------------~~~sC~~~-~~~C~ 146 (172)
..|.+|+++ ++++||. .|.||+.. ...|.
T Consensus 32 ~~d~iQ~~l~CCG~~~~~Dw~~~~~~~~~~~~~vP~SCC~~~~~~C~ 78 (105)
T cd03163 32 AVDYLQRQLQCCGIHNYTDWENTPWFKESKNNSVPLSCCKETFTSCT 78 (105)
T ss_pred HHHHHHHhCcccCCCCHHHHhhchhhhcCCCCccCcCccCCCCCCcc
Confidence 358899997 7899995 25688743 34674
No 6
>cd03159 TM4SF9_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.
Probab=88.95 E-value=0.033 Score=40.58 Aligned_cols=16 Identities=13% Similarity=0.532 Sum_probs=13.3
Q ss_pred chhHHhhhc-----CCcCCCc
Q 044754 118 YSSWLRKRM-----NDEENWR 133 (172)
Q Consensus 118 ~~~~lQ~~~-----~~~~dW~ 133 (172)
..|.+|+++ ++++||.
T Consensus 31 ~~D~iQ~~l~CCG~~~~~DW~ 51 (121)
T cd03159 31 LIDFLQEYWQCCGARGPDDWN 51 (121)
T ss_pred HHHHHHHhccCCCCCChHHhc
Confidence 358899997 7999995
No 7
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=86.31 E-value=2 Score=31.72 Aligned_cols=48 Identities=21% Similarity=0.410 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHH
Q 044754 10 VVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISL 58 (172)
Q Consensus 10 ~~~N~l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~ 58 (172)
.++-++.+++|.+++.+|..+....- +....-.++++++|+++++=|+
T Consensus 44 I~la~~Lli~G~~li~~g~l~~~~~i-~~~~~~~~~llilG~L~fIPG~ 91 (115)
T PF05915_consen 44 IALAVFLLIFGTVLIIIGLLLFFGHI-DGDRDRGWALLILGILCFIPGF 91 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-CCCCcccchHHHHHHHHHhccH
Confidence 44556778899999999988876541 1112234688999999887664
No 8
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.62 E-value=2.5 Score=33.05 Aligned_cols=20 Identities=10% Similarity=0.531 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 044754 11 VLNVVTFLLSVFIVWFGVLL 30 (172)
Q Consensus 11 ~~N~l~~l~G~~ll~~Giw~ 30 (172)
+.+++..++|+++++.||-.
T Consensus 6 i~~i~~iilgilli~~gI~~ 25 (191)
T PF04156_consen 6 IISIILIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555556666655555544
No 9
>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.
Probab=84.40 E-value=0.084 Score=35.96 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=17.4
Q ss_pred hhHHhhhc-----CCcCCCcc--cCcccc
Q 044754 119 SSWLRKRM-----NDEENWRK--IKSCFV 140 (172)
Q Consensus 119 ~~~lQ~~~-----~~~~dW~~--~~sC~~ 140 (172)
.|.+|+++ ++++||.. |.||+.
T Consensus 32 ~d~iQ~~l~CCG~~~~~Dw~~~vP~SCC~ 60 (86)
T cd03164 32 WDMIQSNLQCCGINGTTDWGSGVPSSCCS 60 (86)
T ss_pred HHHHHHHhcCCCCCChhhhCCCCChhhcC
Confidence 58899997 79999964 568864
No 10
>cd03160 CD37_CD82_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptos
Probab=84.14 E-value=0.12 Score=37.29 Aligned_cols=15 Identities=7% Similarity=0.525 Sum_probs=12.7
Q ss_pred hhHHhhhc-----CCcCCCc
Q 044754 119 SSWLRKRM-----NDEENWR 133 (172)
Q Consensus 119 ~~~lQ~~~-----~~~~dW~ 133 (172)
.|.+|+++ +++.||.
T Consensus 36 ~d~iQ~~l~CCG~~~~~Dw~ 55 (117)
T cd03160 36 WDYVQFQLQCCGWTGPQDWT 55 (117)
T ss_pred HHHHHhhCcccCCCCchhHH
Confidence 58899997 7899995
No 11
>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.
Probab=84.14 E-value=0.099 Score=37.93 Aligned_cols=15 Identities=20% Similarity=0.703 Sum_probs=12.7
Q ss_pred hhHHhhhc-----CCcCCCc
Q 044754 119 SSWLRKRM-----NDEENWR 133 (172)
Q Consensus 119 ~~~lQ~~~-----~~~~dW~ 133 (172)
.|.+|+++ +++.||.
T Consensus 32 ~d~lQ~~l~CCG~~~~~Dw~ 51 (119)
T cd03158 32 IDFVQKEFKCCGGDDYRDWS 51 (119)
T ss_pred HHHHHHHccCCCCCChhhcc
Confidence 58899997 7899995
No 12
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=76.92 E-value=37 Score=27.42 Aligned_cols=53 Identities=6% Similarity=0.122 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccch-hhhhHHHHHHHHHHHHHHhhH
Q 044754 10 VVLNVVTFLLSVFIVWFGVLLITTEATECDKF-LQKPVLLLGFFIMIISLIGIR 62 (172)
Q Consensus 10 ~~~N~l~~l~G~~ll~~Giw~~~~~~~~~~~~-~~~~~i~~G~~i~~vs~~G~~ 62 (172)
-++-.++.++|.++..+|..-+.+-+....+. .....-.+|+.++++|.++..
T Consensus 6 eiI~~vLLliG~~f~ligaIGLlRfPD~YtRLHAATKa~TLGv~LILlgv~l~~ 59 (197)
T PRK12585 6 EIIISIMILIGGLLSILAAIGVIRLPDVYTRTHAAGISNTFGVSLLLFATVGYF 59 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHhhccccchhhhHHHHHHHHHHHH
Confidence 34445667777777776666555422111111 111223556555566655543
No 13
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=75.75 E-value=6.4 Score=35.91 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=32.4
Q ss_pred hhhH-HHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHH
Q 044754 43 QKPV-LLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIV 84 (172)
Q Consensus 43 ~~~~-i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l 84 (172)
.||. ++.=.+.+++.+.++.|-.|+|||++..|.++=++.++
T Consensus 209 RW~~~v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lv 251 (526)
T KOG4433|consen 209 RWLAYVLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALV 251 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 3553 45566778899999999999999999999876544443
No 14
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=74.94 E-value=5.4 Score=35.77 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=23.6
Q ss_pred HHHHHHHHhhHHhhhcchhHHHHHHHHH
Q 044754 52 FIMIISLIGIRGACCHSSGYLWSYLVLL 79 (172)
Q Consensus 52 ~i~~vs~~G~~GA~~e~~~lL~~y~~~l 79 (172)
+.+++.+++|+|..|+|||.+.++.++=
T Consensus 218 ~~lviC~~~l~gl~r~Sr~~li~~s~~g 245 (418)
T cd07912 218 LLLVICLVLLVGLARHSRCLLIVFSVCG 245 (418)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4567889999999999999999995543
No 15
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=73.18 E-value=1.1 Score=33.12 Aligned_cols=69 Identities=17% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHHH
Q 044754 15 VTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVG 85 (172)
Q Consensus 15 l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l~ 85 (172)
+-.++|+..+.+|+.+....... ......| +-.|++.++.|.+|.....|++++++..++++-++-++.
T Consensus 5 ~qI~lGi~~i~lGi~~~~~~~~~-~~~~~~p-iW~G~~fiisG~l~i~s~k~~~~~lv~~~l~lsi~s~~~ 73 (150)
T PF04103_consen 5 IQILLGILSIVLGIIALSLSSSV-LVYIGYP-IWGGIFFIISGILGIASEKKPTKCLVIASLVLSIVSALL 73 (150)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH-HHHhccc-HHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHH
Confidence 34567888888888776543220 0111223 455888888999999999999999998887665544433
No 16
>cd03156 uroplakin_I_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are ma
Probab=71.97 E-value=0.2 Score=35.38 Aligned_cols=15 Identities=7% Similarity=0.098 Sum_probs=12.5
Q ss_pred hhHHhhhc-----CCcCCCc
Q 044754 119 SSWLRKRM-----NDEENWR 133 (172)
Q Consensus 119 ~~~lQ~~~-----~~~~dW~ 133 (172)
.|.+|+++ +++.||.
T Consensus 35 ~d~iQ~~l~CCG~~~~~Dw~ 54 (114)
T cd03156 35 WNRVMIELKCCGVNGPTDFV 54 (114)
T ss_pred HHHHHhcccCcCCCCcHHHH
Confidence 48899997 7899994
No 17
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=71.86 E-value=12 Score=35.47 Aligned_cols=62 Identities=16% Similarity=0.286 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHH
Q 044754 10 VVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLI 82 (172)
Q Consensus 10 ~~~N~l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll 82 (172)
.+.-+++.++|+.+++-|+|+..-+. ++-.++.|+.+++.+++= +|+++..|..|..+++.-
T Consensus 4 ~~~~~~~~~~gl~l~~gg~~l~~lgg-------s~yy~iagl~~l~~~~ll----~~~k~aal~lya~~~~~t 65 (773)
T COG4993 4 TLTALVIALCGLALLIGGIWLVALGG-------SWYYLIAGLVLLLSAWLL----LRRKRAALWLYALVLLGT 65 (773)
T ss_pred hHHHHHHHHHHHHHhccceeEEeeCC-------chHHHHHHHHHHHHHHHH----hccchhHHHHHHHHHHHH
Confidence 34557788899999999988865432 133567777777777663 788999999998766543
No 18
>cd03157 TM4SF12_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF12_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human transmembrane 4 superfamily member 12 (TM4SF12).
Probab=71.49 E-value=1.9 Score=30.92 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=20.9
Q ss_pred hhHHhhhc-----CCcCCCcc-------cCccccC-CCcCcc
Q 044754 119 SSWLRKRM-----NDEENWRK-------IKSCFVA-TNICSD 147 (172)
Q Consensus 119 ~~~lQ~~~-----~~~~dW~~-------~~sC~~~-~~~C~~ 147 (172)
.|++|+++ ++++||.. |.||+.+ ...|..
T Consensus 35 ~D~iQ~~l~CCG~~~~~DW~~~~~~~~vP~SCC~~~~~~C~~ 76 (103)
T cd03157 35 WNSFQTEFKCCGVIYFTDWLEMTEMEWPPDSCCSNQYPGCAR 76 (103)
T ss_pred HHHHHHhccCccCCChhHHhccCCCCCCCccccCCCCCCcCc
Confidence 58899997 78999953 5688643 346753
No 19
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=69.83 E-value=14 Score=24.86 Aligned_cols=23 Identities=13% Similarity=0.424 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 044754 12 LNVVTFLLSVFIVWFGVLLITTE 34 (172)
Q Consensus 12 ~N~l~~l~G~~ll~~Giw~~~~~ 34 (172)
-|.+++..|++++.+|-+++.-+
T Consensus 6 ~Nyill~iG~~vIilGfilMsg~ 28 (69)
T PF11297_consen 6 KNYILLAIGIAVIILGFILMSGG 28 (69)
T ss_pred HHHHHHHHHHHHHHHHHHheeCC
Confidence 48888999999999998887643
No 20
>cd03162 peripherin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to her
Probab=69.62 E-value=0.6 Score=35.74 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=12.8
Q ss_pred hhHHhhhc-----CCcCCCc
Q 044754 119 SSWLRKRM-----NDEENWR 133 (172)
Q Consensus 119 ~~~lQ~~~-----~~~~dW~ 133 (172)
.|++|+++ ++++||.
T Consensus 37 ~D~lQ~~fkCCG~~~y~DW~ 56 (143)
T cd03162 37 IDMLQIEFQCCGNNGYRDWF 56 (143)
T ss_pred HHHHHHhccCCCCCChhhhh
Confidence 58899997 7899995
No 21
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=69.25 E-value=26 Score=22.16 Aligned_cols=47 Identities=17% Similarity=0.392 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHHhhhcch
Q 044754 19 LSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSS 69 (172)
Q Consensus 19 ~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~ 69 (172)
.|+..+..|+++...+. .........+|..+++-|......+.++++
T Consensus 2 ~Gil~iv~Gi~~l~~p~----~~~~~~~~i~g~~~i~~Gi~~l~~~~~~~~ 48 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPD----ASLAALAIILGIWLIISGIFQLISAFRRRK 48 (72)
T ss_pred HHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 57788888988887653 122234478888888888888888888443
No 22
>cd03155 CD151_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and
Probab=66.58 E-value=3.3 Score=29.08 Aligned_cols=15 Identities=20% Similarity=0.563 Sum_probs=12.8
Q ss_pred hhHHhhhc-----CCcCCCc
Q 044754 119 SSWLRKRM-----NDEENWR 133 (172)
Q Consensus 119 ~~~lQ~~~-----~~~~dW~ 133 (172)
.|++|+++ +++.||.
T Consensus 35 ~d~iQ~~l~CCG~~~~~Dw~ 54 (110)
T cd03155 35 VDELQQEFKCCGSNNYTDWQ 54 (110)
T ss_pred HHHHHHhCcCcCCCChhhhh
Confidence 58899997 7899995
No 23
>cd03165 NET-5_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.
Probab=65.51 E-value=2.1 Score=29.46 Aligned_cols=29 Identities=14% Similarity=0.377 Sum_probs=20.5
Q ss_pred hhHHhhhc-----CCcCCCcc-------cCccccC-CCcCcc
Q 044754 119 SSWLRKRM-----NDEENWRK-------IKSCFVA-TNICSD 147 (172)
Q Consensus 119 ~~~lQ~~~-----~~~~dW~~-------~~sC~~~-~~~C~~ 147 (172)
.|.+|+++ +++.||.. |.||+.. ...|..
T Consensus 34 ~d~~Q~~l~CCG~~~~~Dw~~~~~~~~vP~SCC~~~~~~C~~ 75 (98)
T cd03165 34 WDITQTEFRCCGVTNYTDWYEVLGENRVPDSCCQEDSQDCGR 75 (98)
T ss_pred HHHHHHhCcCcCCCChhHHHHhcCCCCCCHhhcCCCcccccc
Confidence 58899997 78999953 4688743 346743
No 24
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=65.04 E-value=3.8 Score=30.52 Aligned_cols=45 Identities=18% Similarity=0.369 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHH
Q 044754 14 VVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISL 58 (172)
Q Consensus 14 ~l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~ 58 (172)
.+.+.+|+++++.|..+....-......-..+++++|+++|+=|+
T Consensus 55 vvL~~fg~Lli~lg~fl~~~~~~ag~~~~gv~f~V~G~L~FiPGf 99 (124)
T KOG4753|consen 55 VVLLVFGLLLIGLGFFLAGGRVEAGDRSQGVFFFVLGILLFIPGF 99 (124)
T ss_pred HHHHHHHHHHHHHHHHheecceeeCCCcceEEEehhhhHhcccch
Confidence 445566666777776665432111112223456778877776543
No 25
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=64.74 E-value=25 Score=22.63 Aligned_cols=42 Identities=10% Similarity=0.243 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHHhh
Q 044754 17 FLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGAC 65 (172)
Q Consensus 17 ~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~ 65 (172)
.+.|++++..|+....... .+....+|+..+.-++.|.|...
T Consensus 14 ~~~G~~l~~~~~~~~~~~~-------~~~~~~~g~~ll~~g~~g~Cp~~ 55 (66)
T PF11127_consen 14 IIIGIVLLALGLLGLFGSW-------GWLLGFVGAMLLVTGITGFCPLY 55 (66)
T ss_pred HHHHHHHHHHHHHhcccch-------HHHHHHHHHHHHHHHHHCcCHhH
Confidence 4556666666644332211 34566888888888999888754
No 26
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=64.37 E-value=25 Score=27.45 Aligned_cols=25 Identities=4% Similarity=0.214 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhhHHhhhcchh
Q 044754 46 VLLLGFFIMIISLIGIRGACCHSSG 70 (172)
Q Consensus 46 ~i~~G~~i~~vs~~G~~GA~~e~~~ 70 (172)
+++.++++++++++-.....|..+.
T Consensus 35 ~~~a~i~l~ilai~q~~~~~~~~~~ 59 (182)
T PF09323_consen 35 LYFAAILLLILAIVQLWRWFRPKRR 59 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4577777778888888887777665
No 27
>cd03152 CD9_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD9 is found in virtually all tissues and is potentially involved in developmental processes. It associates with the tetraspanins CD81 and CD63, as well as with some integrin, and has been shown to be involved in a variety of activation, adhesion, and cell motility functions, as well as cell-cell interactions - such as
Probab=61.26 E-value=5.1 Score=26.98 Aligned_cols=21 Identities=5% Similarity=-0.059 Sum_probs=17.4
Q ss_pred hhHHhhhc-----CCcCCCcccCccc
Q 044754 119 SSWLRKRM-----NDEENWRKIKSCF 139 (172)
Q Consensus 119 ~~~lQ~~~-----~~~~dW~~~~sC~ 139 (172)
.|.+|+++ +++.||..+.||.
T Consensus 34 ~d~iQ~~l~CCG~~~~~D~~vP~SC~ 59 (84)
T cd03152 34 LKAIHFALDCCGPTGGLEQFVTDTCP 59 (84)
T ss_pred HHHHHHHHcCCCCCCCcccccCCCCC
Confidence 48899997 7899998788883
No 28
>cd03167 oculospanin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.
Probab=60.87 E-value=5.1 Score=28.98 Aligned_cols=16 Identities=6% Similarity=0.362 Sum_probs=13.2
Q ss_pred chhHHhhhc-----CCcCCCc
Q 044754 118 YSSWLRKRM-----NDEENWR 133 (172)
Q Consensus 118 ~~~~lQ~~~-----~~~~dW~ 133 (172)
..|++|+++ ++++||.
T Consensus 31 ~~d~iQ~~l~CCG~~~~~Dw~ 51 (120)
T cd03167 31 LIDQVQLGLQCCGASSYQDWQ 51 (120)
T ss_pred HHHHHHHhccCCCCCChHHhc
Confidence 458899997 7899995
No 29
>cd03127 tetraspanin_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integr
Probab=56.68 E-value=3 Score=27.68 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=17.6
Q ss_pred chhHHhhhc-----CCcCCCc-----ccCccccC
Q 044754 118 YSSWLRKRM-----NDEENWR-----KIKSCFVA 141 (172)
Q Consensus 118 ~~~~lQ~~~-----~~~~dW~-----~~~sC~~~ 141 (172)
..|.+|+.+ +++.||. .+.||+..
T Consensus 31 ~~d~iq~~l~CCG~~~~~D~~~~~~~vP~SCc~~ 64 (90)
T cd03127 31 AMDALQSTFECCGVNGPTDYLDLRLLVPSSCCKG 64 (90)
T ss_pred HHHHHHHhCcCcCCCChHHHccCCCCCCHhhcCC
Confidence 458899887 7899995 24688643
No 30
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=56.24 E-value=59 Score=23.90 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=28.4
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHhhheeeecC
Q 044754 64 ACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNR 99 (172)
Q Consensus 64 A~~e~~~lL~~y~~~l~ll~l~el~~~i~~~~~~~~ 99 (172)
..-+.+.++..|+.++++++.+.+..+++.+..+.+
T Consensus 50 ~~s~~~pl~~~~~~~~~~v~~~~~~~avv~~~~~~~ 85 (237)
T PF02932_consen 50 PTSYAKPLDGWYFICTMFVFSASLEFAVVVYNIHHR 85 (237)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhccccchhhhHHHHhhhhhhhhccc
Confidence 445667999999999999988888888888877443
No 31
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=55.76 E-value=95 Score=25.09 Aligned_cols=52 Identities=15% Similarity=0.341 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhhhccccc----ccc---ch--hhhhHHHHHHHHHHHHHHhhHHhhh
Q 044754 15 VTFLLSVFIVWFGVLLITTEAT----ECD---KF--LQKPVLLLGFFIMIISLIGIRGACC 66 (172)
Q Consensus 15 l~~l~G~~ll~~Giw~~~~~~~----~~~---~~--~~~~~i~~G~~i~~vs~~G~~GA~~ 66 (172)
...++|++..++|+--..++.. +.+ +. .+.+..+-|..+++.++.|......
T Consensus 4 ~~~v~g~~~~~~gl~G~~~~~yAllldye~g~~v~N~S~l~~vyG~~l~~~~~~~~~~~~~ 64 (196)
T PF06770_consen 4 ILFVVGSAAFVFGLMGIVDERYALLLDYENGSSVFNCSGLVFVYGPLLLLVTTWGVYKITS 64 (196)
T ss_pred hhHHHHHHHHHHHhhheecCceeeEEEecCCCccEeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445788888888876665421 111 11 2344678999998888888866664
No 32
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=54.98 E-value=77 Score=22.77 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 044754 7 SLFVVLNVVTFLLSVFIVWFGVLLITT 33 (172)
Q Consensus 7 ~ll~~~N~l~~l~G~~ll~~Giw~~~~ 33 (172)
++..+.+.+.+++.++++++++|.+++
T Consensus 3 ~l~~~~~~i~~~l~~~~~~~~v~Alv~ 29 (100)
T PF10724_consen 3 FLFQIQGWILLALSLVALVLAVWALVD 29 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788889999999999999876
No 33
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=54.06 E-value=60 Score=25.92 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHHhhhcch
Q 044754 15 VTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSS 69 (172)
Q Consensus 15 l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~ 69 (172)
.+.+.|++++..|++....+.. ........+|.+.++.|.+=..+|..+++
T Consensus 21 ~~l~~Gv~lii~Gl~~l~~P~~----s~~~l~~~vG~~lli~Gi~~ii~af~~r~ 71 (185)
T COG3247 21 WVLLLGVLLIILGLLALFNPAI----STVALVYVVGILLLISGIIEIISAFGNRS 71 (185)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567788888888888775421 11223356777777777777777666655
No 34
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=53.15 E-value=64 Score=21.32 Aligned_cols=48 Identities=15% Similarity=0.461 Sum_probs=34.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHH
Q 044754 3 RCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLI 59 (172)
Q Consensus 3 ~~~~~ll~~~N~l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~ 59 (172)
+.-|.+.-.+.++.+++|...+.++.+.... ....+.+|+..+++|++
T Consensus 5 ~~fk~iW~~~DIi~Fila~i~i~it~F~~n~---------~~g~i~i~I~l~l~G~i 52 (63)
T PF06341_consen 5 KFFKTIWKYFDIILFILAMIFINITAFLINQ---------IAGLISIGITLFLAGLI 52 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 3567777888899999999999999877643 13456667666666643
No 35
>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.
Probab=51.95 E-value=6.1 Score=27.18 Aligned_cols=30 Identities=23% Similarity=0.528 Sum_probs=20.5
Q ss_pred chhHHhhhc-----CCcCCCcc---------cCccccC-CCcCcc
Q 044754 118 YSSWLRKRM-----NDEENWRK---------IKSCFVA-TNICSD 147 (172)
Q Consensus 118 ~~~~lQ~~~-----~~~~dW~~---------~~sC~~~-~~~C~~ 147 (172)
..|.+|+++ ++++||.. |.||+.. .+.|..
T Consensus 31 ~~d~iQ~~l~CCG~~~~~Dw~~~~~~~~~~vP~SCC~~~~~~C~~ 75 (99)
T cd03166 31 ILDRMQKDLKCCGANNYTDWENIPSLDTDSVPDSCCINVTKGCGI 75 (99)
T ss_pred HHHHHHHHhcccCCCChhhhhcccCCCCCCCCcCccCcCCCCccc
Confidence 358899987 78999952 4688643 346753
No 36
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=49.70 E-value=41 Score=26.35 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHh
Q 044754 13 NVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60 (172)
Q Consensus 13 N~l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G 60 (172)
|++..++..+++++|+|+..+++ -....+...++.-|+.+++++.-+
T Consensus 4 ~l~~~i~~gvL~~~G~Ylll~rn-Lir~iiGl~il~~~vnLlii~~G~ 50 (163)
T PRK07946 4 NLGLLVAIGVLTSAGVYLLLERS-LTRMLLGLLLIGNGVNLLILTAGG 50 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56667777888999999887542 111223334566666666666554
No 37
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=49.63 E-value=6.3 Score=35.04 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhHHhhhcchhHHHHHHHHHH
Q 044754 51 FFIMIISLIGIRGACCHSSGYLWSYLVLLM 80 (172)
Q Consensus 51 ~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ 80 (172)
.+.+++.++++.|..|+|||++..+.++-+
T Consensus 194 ~l~l~icl~~l~glar~Sk~~li~~~v~gl 223 (406)
T PF04906_consen 194 ILDLVICLLGLLGLARQSKCLLIVFSVLGL 223 (406)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEeeeccH
Confidence 355678899999999999999987765433
No 38
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=49.59 E-value=34 Score=21.36 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=15.6
Q ss_pred chhhhhHHHHHHHHHHHHHHh
Q 044754 40 KFLQKPVLLLGFFIMIISLIG 60 (172)
Q Consensus 40 ~~~~~~~i~~G~~i~~vs~~G 60 (172)
.....|.+.+|+++.+.+..+
T Consensus 22 ~i~~lP~~~~Gi~Lii~g~v~ 42 (49)
T PF11384_consen 22 RIQALPAILIGIGLIISGGVG 42 (49)
T ss_pred chhccHHHHHhHHHHhhhhhh
Confidence 455678899999887777655
No 39
>PF03779 SPW: SPW repeat; InterPro: IPR005530 A short repeat found in a small family of membrane-bound proteins. This repeat contains a conserved SPW motif in the first of two transmembrane helices [].
Probab=47.80 E-value=39 Score=21.14 Aligned_cols=35 Identities=14% Similarity=0.317 Sum_probs=21.4
Q ss_pred HHHHHhhhcccc---ccccchhhhhHHHHHHHHHHHHH
Q 044754 24 VWFGVLLITTEA---TECDKFLQKPVLLLGFFIMIISL 58 (172)
Q Consensus 24 l~~Giw~~~~~~---~~~~~~~~~~~i~~G~~i~~vs~ 58 (172)
+..|+|+...+. ...+....+.-+++|+++.++++
T Consensus 6 ~llGlwli~SPWvlgf~~~~~~~~~~vi~G~~v~~la~ 43 (51)
T PF03779_consen 6 LLLGLWLIVSPWVLGFSATAAAAWNNVIVGILVALLAL 43 (51)
T ss_pred HHHHHHHHHhHHHcccCCchhHHHHHHHHHHHHHHHHH
Confidence 556777776643 11112234556889999888883
No 40
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=46.98 E-value=92 Score=27.41 Aligned_cols=39 Identities=5% Similarity=-0.072 Sum_probs=19.5
Q ss_pred HHhhHHhhhcchh------HHHHHHHHHHHHHHHHHHHHhhheeeec
Q 044754 58 LIGIRGACCHSSG------YLWSYLVLLMLIIVGVISLTVFTLAVTN 98 (172)
Q Consensus 58 ~~G~~GA~~e~~~------lL~~y~~~l~ll~l~el~~~i~~~~~~~ 98 (172)
++++++-.++.+. -++...+++.+.++.. .|..-.+.++
T Consensus 198 ~~~~i~k~~~~~~~~~~~~~~ki~~ifl~v~lLfn--sG~i~~i~~d 242 (367)
T PF09971_consen 198 LFKLINKLFRRIWKPINKNSFKILSIFLAVFLLFN--SGFIYEIFGD 242 (367)
T ss_pred HHHHHHHhhhcccccccchHHHHHHHHHHHHHHHh--hhHHHHHhcC
Confidence 3445555555443 4555556666555555 3444444444
No 41
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=45.33 E-value=1.6e+02 Score=23.56 Aligned_cols=83 Identities=18% Similarity=0.154 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhHH-HHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHHHHH
Q 044754 9 FVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVL-LLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVI 87 (172)
Q Consensus 9 l~~~N~l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i-~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l~el 87 (172)
+++++.+++++.++-++.++-..++..... ....|-.+ .++ ++.+++|..|--|.|..+|..|.+..++.=++=+
T Consensus 40 l~~~h~ll~l~~~a~v~~~~L~~i~~~~~p-~p~~Wey~~~lS---~ip~~~G~~s~~rN~i~~l~~y~~~~~~~gl~pl 115 (186)
T PF07086_consen 40 LILFHALLWLLMAAKVSVDILLEISELQIP-SPYQWEYIWCLS---LIPSLLGLLSLRRNNISLLRLYMIGSSLFGLLPL 115 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccC-ChhHHHHHHHHH---HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 446677788777776776666555432111 11222222 233 3455667777777777888888776666545555
Q ss_pred HHHhhhee
Q 044754 88 SLTVFTLA 95 (172)
Q Consensus 88 ~~~i~~~~ 95 (172)
..|.....
T Consensus 116 ~~g~~~~~ 123 (186)
T PF07086_consen 116 IYGAMYYF 123 (186)
T ss_pred HHHHHHHH
Confidence 55554433
No 42
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=44.99 E-value=83 Score=24.31 Aligned_cols=15 Identities=13% Similarity=0.592 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHh
Q 044754 46 VLLLGFFIMIISLIG 60 (172)
Q Consensus 46 ~i~~G~~i~~vs~~G 60 (172)
.+++|+++++.|..+
T Consensus 11 ~iilgilli~~gI~~ 25 (191)
T PF04156_consen 11 LIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555544444444
No 43
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=44.80 E-value=31 Score=25.87 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044754 6 NSLFVVLNVVTFLLSVFIVWFGVLLI 31 (172)
Q Consensus 6 ~~ll~~~N~l~~l~G~~ll~~Giw~~ 31 (172)
||.+..+.++..++|+++|+.+|-.-
T Consensus 36 NysiL~Ls~vvlvi~~~LLgrsi~AN 61 (125)
T PF15048_consen 36 NYSILALSFVVLVISFFLLGRSIQAN 61 (125)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHhc
Confidence 67778888888888888888887553
No 44
>PRK08389 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=43.51 E-value=92 Score=22.64 Aligned_cols=48 Identities=13% Similarity=0.238 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhhhc-cccccccchhhhhHHHHHHHHHHHHHHhhHH
Q 044754 15 VTFLLSVFIVWFGVLLIT-TEATECDKFLQKPVLLLGFFIMIISLIGIRG 63 (172)
Q Consensus 15 l~~l~G~~ll~~Giw~~~-~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~G 63 (172)
.+.+.+..++++|+|... +++ -.......-++.-|+.++++++-...|
T Consensus 4 ~~~~~~~~Lf~iGlygil~rrn-li~~liglei~~~av~L~lv~~g~~~~ 52 (114)
T PRK08389 4 AYYFGAIALVLIGLYGVLVKKN-LLKIIIGLDIMETGVNLLLISIGYVSG 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 456677888999999665 432 111223334566777777777765544
No 45
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=40.81 E-value=1.3e+02 Score=24.21 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHH
Q 044754 11 VLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRG 63 (172)
Q Consensus 11 ~~N~l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~G 63 (172)
+.|++-...|++-+..||-..+-...--...+.|.+++.+.+-.++|..-+.|
T Consensus 42 vsNiisv~Sgll~I~~GI~AIvlSrnl~~~~L~W~Ll~~S~ln~LlSaAc~vG 94 (188)
T PF12304_consen 42 VSNIISVTSGLLSIICGIVAIVLSRNLRNRPLHWTLLVVSLLNALLSAACAVG 94 (188)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhccCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777765432111112335666666666655555544433
No 46
>PF06772 LtrA: Bacterial low temperature requirement A protein (LtrA); InterPro: IPR010640 This entry consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes []. It also contains a number of uncharacterised fungal proteins.
Probab=39.06 E-value=2.5e+02 Score=24.00 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHHhhhcc
Q 044754 9 FVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHS 68 (172)
Q Consensus 9 l~~~N~l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~ 68 (172)
....--+....|+.++++|+=...+...+.........+..|..++.+|.....-..++.
T Consensus 251 ~~~y~Hl~l~~givl~~~gl~~~v~~~~~~~~~~~~~~~~~g~alfll~~~~~~~~~~~~ 310 (354)
T PF06772_consen 251 AWIYLHLPLVAGIVLIAVGLELVVEHPVAHSSPRWALALLGGVALFLLGLWLFRRRNKRR 310 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334445778899999999988777643222122222334778888888777665555543
No 47
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=38.77 E-value=33 Score=22.58 Aligned_cols=21 Identities=5% Similarity=0.094 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q 044754 14 VVTFLLSVFIVWFGVLLITTE 34 (172)
Q Consensus 14 ~l~~l~G~~ll~~Giw~~~~~ 34 (172)
.+.+++|+.++++|+|...+.
T Consensus 48 ~ll~~vg~gli~~gi~~~~~a 68 (73)
T PF06724_consen 48 WLLGAVGLGLIGYGIWQFVKA 68 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999988763
No 48
>PRK05715 NADH:ubiquinone oxidoreductase subunit K; Validated
Probab=37.07 E-value=1.3e+02 Score=21.01 Aligned_cols=73 Identities=7% Similarity=0.141 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhhhccccccccc-hhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHHHHHHHHhhhee
Q 044754 17 FLLSVFIVWFGVLLITTEATECDK-FLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLA 95 (172)
Q Consensus 17 ~l~G~~ll~~Giw~~~~~~~~~~~-~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l~el~~~i~~~~ 95 (172)
.+++..++.+|+|....+ .+.-. ....-.+..|+.+++++.....+ + ..=..+.....++-.+|.+.+....+
T Consensus 8 ~~~~~~lf~iGl~~~~~~-~~li~~Ll~lE~m~~~v~l~~~~~~~~~~----~-~~~~~l~l~~ivi~~~E~algLsllv 81 (100)
T PRK05715 8 LILAAILFCIGLVGLLLR-RNAIVVLMSIELMLNAVNLNFVAFSSYLG----D-LDGQVFAFFVITVAAAEAAIGLAILL 81 (100)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888875532 12111 12222455666555555444331 1 11123444445566778777655544
No 49
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=35.98 E-value=64 Score=18.60 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHhhhc
Q 044754 44 KPVLLLGFFIMIISLIGIRGACCH 67 (172)
Q Consensus 44 ~~~i~~G~~i~~vs~~G~~GA~~e 67 (172)
+.-+++|.+++++++.|..-..++
T Consensus 10 W~Gl~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 10 WLGLILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445788999999999998776654
No 50
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=35.74 E-value=38 Score=22.31 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=15.8
Q ss_pred HHHHHHHH---HHHHHHHHHHHh
Q 044754 10 VVLNVVTF---LLSVFIVWFGVL 29 (172)
Q Consensus 10 ~~~N~l~~---l~G~~ll~~Giw 29 (172)
..+|++++ +.|++++++|--
T Consensus 2 ~~ln~lwl~~~l~~l~v~tigPA 24 (77)
T PF04854_consen 2 VVLNLLWLLFTLAGLPVFTIGPA 24 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888 899998888763
No 51
>PRK10209 acid-resistance membrane protein; Provisional
Probab=35.32 E-value=2.2e+02 Score=22.32 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHHhhhc
Q 044754 15 VTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCH 67 (172)
Q Consensus 15 l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e 67 (172)
...+.|++.+..|+.....+..+ .......+|...++-|+....++.+.
T Consensus 23 ~~li~Gil~ivlGi~~l~~P~~~----~~~~~~~~g~~ll~~Gi~~l~~~~~~ 71 (190)
T PRK10209 23 AIQIIAVLLFIGGLLCLSFPFVS----GDALSTVVGILLICSGIALIVGLFAN 71 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45678999999999988765211 11223567877777787777766543
No 52
>TIGR00941 2a6301s03 Multicomponent Na+:H+ antiporter, MnhC subunit.
Probab=33.09 E-value=1.2e+02 Score=21.91 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHh
Q 044754 13 NVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60 (172)
Q Consensus 13 N~l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G 60 (172)
|+++.+...+++++|+|+..+++ -........++.-|+.+++++.-+
T Consensus 2 ~~~~~~~~~~L~~~G~Y~il~~n-lir~iigl~i~~~~vnL~~v~~g~ 48 (104)
T TIGR00941 2 ESIFALIIGILTASGVYLLLSRS-VVRVVLGLALLGYAVNLFILTMGG 48 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566677788899999877542 111223333455666565555443
No 53
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=32.97 E-value=55 Score=27.58 Aligned_cols=30 Identities=37% Similarity=0.704 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhheeeec
Q 044754 69 SGYLWSYLVLLMLIIVGVISLTVFTLAVTN 98 (172)
Q Consensus 69 ~~lL~~y~~~l~ll~l~el~~~i~~~~~~~ 98 (172)
+.+|.+|..++++++++-++.+++.+-+-+
T Consensus 34 KrcLY~fvLlL~i~ivvNLalTiWIlkVm~ 63 (292)
T KOG3950|consen 34 KRCLYTFVLLLMILIVVNLALTIWILKVMN 63 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467888999999999999999999876544
No 54
>KOG4054 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.76 E-value=2.5e+02 Score=22.29 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHHHHHH
Q 044754 9 FVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVIS 88 (172)
Q Consensus 9 l~~~N~l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l~el~ 88 (172)
+++..++.|+++++-+++|---..+. .+...-++|.-.-.+ =++-|++|..+.-|++-..|..|.+.+++..+.-+.
T Consensus 40 lifvh~lI~v~mlak~~l~hl~~~k~-d~v~~py~wey~~~~--SllpslLgllsf~rnkv~~L~l~m~a~~lf~i~p~~ 116 (183)
T KOG4054|consen 40 LIFVHALIWVLMLAKMSLGHLRLLKH-DQVPMPYQWEYVWAL--SLLPSLLGLLSFRRNKVSYLVLYMIAMGLFMIFPLV 116 (183)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhc-ccCCCchhHHHHHHH--HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888877777553221111 111112333333333 245678888888888889999999988887766554
Q ss_pred HHh
Q 044754 89 LTV 91 (172)
Q Consensus 89 ~~i 91 (172)
.+.
T Consensus 117 ~~~ 119 (183)
T KOG4054|consen 117 YGV 119 (183)
T ss_pred Hhc
Confidence 443
No 55
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=32.07 E-value=1.9e+02 Score=23.51 Aligned_cols=50 Identities=24% Similarity=0.368 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHHHHHHHHhh
Q 044754 43 QKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVISLTVF 92 (172)
Q Consensus 43 ~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l~el~~~i~ 92 (172)
+|.-|.+-.+-+++-.+|..||..-++..+..|.+-..+-+..-+.+..+
T Consensus 33 qWaPIl~NF~hIi~vIlGlFG~~QyR~ryi~~Y~vW~~~Wv~wNvfiicf 82 (200)
T PF05640_consen 33 QWAPILANFLHIIFVILGLFGAIQYRPRYIIVYAVWTALWVTWNVFIICF 82 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHhHHHHHH
Confidence 45556666666666789999999999999999998777666655544333
No 56
>PRK02542 photosystem I assembly protein Ycf4; Provisional
Probab=31.84 E-value=1e+02 Score=24.79 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=32.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccc-cccchhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHH
Q 044754 2 ARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEAT-ECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLL 79 (172)
Q Consensus 2 ~~~~~~ll~~~N~l~~l~G~~ll~~Giw~~~~~~~-~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l 79 (172)
.|.|||... ++..+.|+..+-+|+-.-...+. ...+....+++=-|++|..=|.+| .++.+|+.+.
T Consensus 21 RR~SNy~wA---~i~~~G~~GFll~g~sSYl~~~Llpf~~~~~i~FiPQGivM~FYGi~g---------l~ls~Ylw~t 87 (188)
T PRK02542 21 RRLSNYLWA---SMVTIGGIGFLLAGLSSYLGRNLLPVGDPSTLIFIPQGLAMGFYGVAG---------TLLALYLWLV 87 (188)
T ss_pred cchhHHHHH---HHHHhhhHHHHHhhhHHhhCcCccccCChhhCeEeCccHHHHHHHHHH---------HHHHHHHHHh
Confidence 477888766 45556666666555533322210 000111223455676665555544 4566676543
No 57
>PF02392 Ycf4: Ycf4; InterPro: IPR003359 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA (IPR005137 from INTERPRO) [], Ycf3 [, ], and Ycf4 []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. ; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009579 thylakoid, 0016021 integral to membrane
Probab=31.47 E-value=1e+02 Score=24.60 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=32.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccc-ccccchhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHH
Q 044754 2 ARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEA-TECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVL 78 (172)
Q Consensus 2 ~~~~~~ll~~~N~l~~l~G~~ll~~Giw~~~~~~-~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~ 78 (172)
.|.|||+.. ++..+.|+..+-+|+..-...+ ....+....+++=-|++|..=|.+| .++.+|+.+
T Consensus 14 Rr~SN~~wa---~ii~~G~lGFll~G~sSYl~~nll~~~~~~~i~FiPQGivM~FYGi~g---------l~ls~Ylw~ 79 (180)
T PF02392_consen 14 RRFSNYFWA---FIIFLGGLGFLLVGISSYLGKNLLPFSDSSQIPFIPQGIVMCFYGIAG---------LFLSFYLWL 79 (180)
T ss_pred chHHHHHHH---HHHHHhhHHHHHhHHHHHhCCCccccCCcceeeEECccHHHHHHHHHH---------HHHHHHHhh
Confidence 467888766 4556666666666654433321 0000111223445676655555554 345666553
No 58
>CHL00015 ndhE NADH dehydrogenase subunit 4L
Probab=30.92 E-value=1.4e+02 Score=20.97 Aligned_cols=75 Identities=9% Similarity=0.161 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHHHHHHHHhhhee
Q 044754 18 LLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLA 95 (172)
Q Consensus 18 l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l~el~~~i~~~~ 95 (172)
+++..+..+|++....+..-.......-.+..|+.++++++....+..-... ..+.....++-.+|.+.|....+
T Consensus 8 ~~~~~lf~iGl~g~l~~rnll~~LlslE~m~~~v~l~~~~~~~~~~~~~~~~---~~l~l~~ivia~~E~algLsllv 82 (101)
T CHL00015 8 ILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKG---DIFSIFVIAIAAAEAAIGLAIVS 82 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778887654211111112233566777766666665543221011 23334445566778777665554
No 59
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=30.73 E-value=2.2e+02 Score=20.85 Aligned_cols=29 Identities=21% Similarity=0.518 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHH-HHhhHHhhhcchhHHHH
Q 044754 46 VLLLGFFIMIIS-LIGIRGACCHSSGYLWS 74 (172)
Q Consensus 46 ~i~~G~~i~~vs-~~G~~GA~~e~~~lL~~ 74 (172)
+.++|.++.+++ +++.++.+++++.+...
T Consensus 74 ~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (172)
T PF13903_consen 74 FLILGLLLLLFAFVFALIGFCKRSYTLYLF 103 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhHH
Confidence 346666666665 44778888888765554
No 60
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=30.73 E-value=1.2e+02 Score=21.22 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=22.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 044754 3 RCCNSLFVVLNVVTFLLSVFIVWFGVLLITT 33 (172)
Q Consensus 3 ~~~~~ll~~~N~l~~l~G~~ll~~Giw~~~~ 33 (172)
|.....++++..+.++++..++..|......
T Consensus 34 r~~a~~~~v~SWi~f~ia~~~ll~ga~~n~~ 64 (97)
T PF06749_consen 34 RTLAVVFFVLSWIVFIIAEALLLAGASMNAR 64 (97)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344667777888888888888888877544
No 61
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=29.32 E-value=1.2e+02 Score=20.60 Aligned_cols=10 Identities=0% Similarity=0.132 Sum_probs=4.7
Q ss_pred HHhhheeeec
Q 044754 89 LTVFTLAVTN 98 (172)
Q Consensus 89 ~~i~~~~~~~ 98 (172)
++.+++.-.+
T Consensus 59 ~~~~g~~k~~ 68 (93)
T PF12666_consen 59 FAFLGFFKKD 68 (93)
T ss_pred HHHhHhhhhc
Confidence 4444555443
No 62
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=29.02 E-value=1e+02 Score=26.54 Aligned_cols=53 Identities=13% Similarity=0.340 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccccc--cccchh-------------hhhHHHHHHHHHHHHHHhhHHhh
Q 044754 13 NVVTFLLSVFIVWFGVLLITTEAT--ECDKFL-------------QKPVLLLGFFIMIISLIGIRGAC 65 (172)
Q Consensus 13 N~l~~l~G~~ll~~Giw~~~~~~~--~~~~~~-------------~~~~i~~G~~i~~vs~~G~~GA~ 65 (172)
+.++++.|+.++..++....|+.. .....+ ..|-.+.|+++++++.+.-.|-.
T Consensus 2 e~~Y~l~Gl~~~~~a~~~~~Dk~np~R~gt~lFW~llg~~F~~G~~lp~~~~G~lvl~m~~la~~~~v 69 (308)
T PF06166_consen 2 EIFYILIGLVFIITAVRSLRDKTNPKRIGTALFWGLLGLIFIFGDYLPPFVVGILVLVMALLAGFGQV 69 (308)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHcCCC
Confidence 468899999999999998887531 111111 12446788888887776655543
No 63
>CHL00036 ycf4 photosystem I assembly protein Ycf4
Probab=28.65 E-value=1.3e+02 Score=24.13 Aligned_cols=63 Identities=21% Similarity=0.252 Sum_probs=32.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccch---hhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHH
Q 044754 2 ARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKF---LQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVL 78 (172)
Q Consensus 2 ~~~~~~ll~~~N~l~~l~G~~ll~~Giw~~~~~~~~~~~~---~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~ 78 (172)
.|.|||... ++..+.|+..+-+|+-.-...+ ..++ ...+++=-|++|..=|.+| .++.+|+.+
T Consensus 17 RR~SNy~wA---~i~~~G~~GFll~g~SSYl~~~--Llpf~~~~~i~FiPQGivM~FYGi~g---------l~ls~Ylw~ 82 (184)
T CHL00036 17 RRISNFFWA---FILFLGSLGFLLVGISSYLGKN--LIPFLPSQQILFFPQGIVMCFYGIAG---------LFISSYLWC 82 (184)
T ss_pred cchhHHHHH---HHHHhhhHHHHHhhhHHhhCcC--ccccCChhhCeEeCccHHHHHHHHHH---------HHHHHHHHH
Confidence 467888765 4455666665555543332221 1111 1223455676665555554 456667654
No 64
>PRK12659 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=27.84 E-value=1.5e+02 Score=21.67 Aligned_cols=47 Identities=6% Similarity=0.002 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHh
Q 044754 13 NVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60 (172)
Q Consensus 13 N~l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G 60 (172)
|.+..+...+++++|+|...+++ -........++.-|+.++++++-.
T Consensus 2 ~~~~~~~~~~Lf~iG~y~il~rn-li~~ligl~im~~avnL~~v~~g~ 48 (117)
T PRK12659 2 EFLLAIVVGGLYAAGIYMMLRRS-IVKLVIGLILLGNAANLLIFTVGR 48 (117)
T ss_pred chHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44566677788999999886542 111122233455555555555544
No 65
>KOG4556 consensus Predicted membrane protein [Function unknown]
Probab=27.71 E-value=2.6e+02 Score=22.43 Aligned_cols=47 Identities=26% Similarity=0.411 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHHHHHHH
Q 044754 43 QKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVISL 89 (172)
Q Consensus 43 ~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l~el~~ 89 (172)
+|.-|..-.+=+++-.+|..|+...++..+.+|..-+.+-...-+.+
T Consensus 30 qWapilanFvhIiivIlGLFGtiQyR~ryl~~y~~w~alwVtwNvfI 76 (205)
T KOG4556|consen 30 QWAPILANFVHIIIVILGLFGTIQYRRRYLYTYASWLALWVTWNVFI 76 (205)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHhHHh
Confidence 45556666666667778899999999999999988777666555433
No 66
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=27.06 E-value=1.9e+02 Score=21.33 Aligned_cols=20 Identities=10% Similarity=0.486 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 044754 14 VVTFLLSVFIVWFGVLLITT 33 (172)
Q Consensus 14 ~l~~l~G~~ll~~Giw~~~~ 33 (172)
++-.+.|++++..|++....
T Consensus 8 ~~~~~~~~~~i~~gi~~l~~ 27 (136)
T PF08507_consen 8 ILNIIAGILLILAGILSLFN 27 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34456677777778776654
No 67
>PRK08600 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=26.91 E-value=1.5e+02 Score=21.71 Aligned_cols=46 Identities=13% Similarity=0.272 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHh
Q 044754 14 VVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60 (172)
Q Consensus 14 ~l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G 60 (172)
.+..+...+++++|+|+..+++ -........++.-|+.+++++.-+
T Consensus 3 ~~~~~~~~~L~~~G~ylll~rn-lik~iigl~i~~~~v~L~~v~~g~ 48 (113)
T PRK08600 3 ILMIIVIGILTAIAVYLILSKS-LLRIIIGTTLLSHGANLLLLTMGG 48 (113)
T ss_pred hHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556667889999877542 111223333455666565555443
No 68
>PF15471 TMEM171: Transmembrane protein family 171
Probab=25.13 E-value=67 Score=27.45 Aligned_cols=50 Identities=28% Similarity=0.495 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc-ccccchhh--hh---HHHHHHHHHHHH
Q 044754 8 LFVVLNVVTFLLSVFIVWFGVLLITTEA-TECDKFLQ--KP---VLLLGFFIMIIS 57 (172)
Q Consensus 8 ll~~~N~l~~l~G~~ll~~Giw~~~~~~-~~~~~~~~--~~---~i~~G~~i~~vs 57 (172)
+||+|-.+.+.+|+++-.+|.|.-.... .+|..++. .| .+.+|.+++.=+
T Consensus 23 FLfvFGavllCvG~lLsIfgfqaC~ye~l~dCs~vLKi~GP~cAvvGLg~ViLARS 78 (319)
T PF15471_consen 23 FLFVFGAVLLCVGVLLSIFGFQACQYETLSDCSMVLKIAGPSCAVVGLGAVILARS 78 (319)
T ss_pred hhHHHhHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhccchhhhhcchhheehhh
Confidence 4455555555566666666655543221 34544432 23 345555554433
No 69
>KOG3646 consensus Acetylcholine receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.68 E-value=1.7e+02 Score=26.79 Aligned_cols=92 Identities=15% Similarity=0.225 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHHHH
Q 044754 7 SLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGV 86 (172)
Q Consensus 7 ~ll~~~N~l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l~e 86 (172)
.+.+.||++.-.+=+.++.+=. +.-+...+++......+.+.+..|+.=..-...+-.|+-.++..|+-+..++..+-
T Consensus 235 TLyYgfNlIiP~lLIs~m~lLg--FtlppD~gEKitL~iTilLsvc~FL~mvse~~PpTSeaVPllg~fFsc~m~iv~~S 312 (486)
T KOG3646|consen 235 TLYYGFNLIIPSLLISLMSLLG--FTLPPDAGEKITLQITILLSVCFFLTMVSEMTPPTSEAVPLLGAFFSCCMFIVAAS 312 (486)
T ss_pred hhHHHHHHHHHHHHHHHHHHhc--cccCccccceeeeeeehHHHHHHHHHHHHhhcCCccccccHHHHHHHHHHHHHHhh
Confidence 3778889775322222111111 11122334443222223334434444444567889999999999999999888888
Q ss_pred HHHHhhheeeecCC
Q 044754 87 ISLTVFTLAVTNRG 100 (172)
Q Consensus 87 l~~~i~~~~~~~~~ 100 (172)
++++|+++-++.+.
T Consensus 313 vvfTv~vLn~h~R~ 326 (486)
T KOG3646|consen 313 VVFTVIVLNLHHRT 326 (486)
T ss_pred heeEEEEEeeeccC
Confidence 88888888777653
No 70
>COG1971 Predicted membrane protein [Function unknown]
Probab=24.19 E-value=3.8e+02 Score=21.53 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHHHHHHH
Q 044754 46 VLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVISL 89 (172)
Q Consensus 46 ~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l~el~~ 89 (172)
.+.+|.+.++++.+|..=. +.-...+.-|.=++.-+++.-++.
T Consensus 139 av~iG~~T~il~~~G~~IG-~~~g~~~g~~ae~lgGiiLI~~G~ 181 (190)
T COG1971 139 AVAIGLITLILSALGAIIG-RKLGKFLGKYAEILGGIILIGIGV 181 (190)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4578888888888886433 555556666665555555444443
No 71
>PRK12658 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=24.13 E-value=1.5e+02 Score=22.17 Aligned_cols=47 Identities=9% Similarity=0.019 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHh
Q 044754 13 NVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60 (172)
Q Consensus 13 N~l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G 60 (172)
+++..+...+++++|+|+..+++ -........++.-|+.+++++.-+
T Consensus 2 ~~~~~~~~g~L~~~G~Ylil~rn-lir~iigl~il~~avnLlii~~g~ 48 (125)
T PRK12658 2 EALFAILVGVFFAAAIYLMLSRH-IIRILFGLALLGNAVNLLIFTAGR 48 (125)
T ss_pred chHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHhhhhhcc
Confidence 34556666778999999887542 111222333455565555555444
No 72
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=23.71 E-value=71 Score=20.76 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHh
Q 044754 46 VLLLGFFIMIISLIG 60 (172)
Q Consensus 46 ~i~~G~~i~~vs~~G 60 (172)
.++.|++..++|+.+
T Consensus 44 ~ligG~va~ivGl~~ 58 (59)
T PF11381_consen 44 YLIGGAVAVIVGLFL 58 (59)
T ss_pred HHHhHHHHHHHHHhh
Confidence 567888888887764
No 73
>COG3374 Predicted membrane protein [Function unknown]
Probab=23.44 E-value=1.9e+02 Score=23.31 Aligned_cols=19 Identities=42% Similarity=0.728 Sum_probs=9.5
Q ss_pred hhhhHHHHHHHHHHHHHHh
Q 044754 42 LQKPVLLLGFFIMIISLIG 60 (172)
Q Consensus 42 ~~~~~i~~G~~i~~vs~~G 60 (172)
...|++++|.++++.|+-|
T Consensus 43 ~~~p~~~lG~~~~itGl~g 61 (197)
T COG3374 43 FAAPAAGLGIFILITGLWG 61 (197)
T ss_pred ccchHHHHHHHHHHHHHHh
Confidence 3345555555555555444
No 74
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=22.75 E-value=80 Score=30.59 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhheeee
Q 044754 70 GYLWSYLVLLMLIIVGVISLTVFTLAVT 97 (172)
Q Consensus 70 ~lL~~y~~~l~ll~l~el~~~i~~~~~~ 97 (172)
|.=.+|.++++++.+..++..+.+|+-.
T Consensus 137 c~R~~l~~~L~~~~~~il~g~i~aF~~n 164 (806)
T PF05478_consen 137 CRRGCLGILLLLLTLIILFGVICAFVAN 164 (806)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666643
No 75
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=22.47 E-value=3.1e+02 Score=21.21 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHhh
Q 044754 14 VVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGI 61 (172)
Q Consensus 14 ~l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~ 61 (172)
-+-..+|+.++.+.-|+...... ++..+..+++-.+.|.+|++|.
T Consensus 70 GiP~~lG~~~f~~~y~l~~~~~~---dvP~~~~~~~S~~~Fg~gllGi 114 (153)
T PF11947_consen 70 GIPTALGVAVFVVFYYLKSRQIV---DVPPWAVLLVSLVFFGLGLLGI 114 (153)
T ss_pred chHHHHHHHHHHHHHHHHhcccc---ccCchHHHHHHHHHHHHHHHhh
Confidence 34455666655555455443221 2333444555566677777773
No 76
>PRK12660 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=21.84 E-value=3.2e+02 Score=19.81 Aligned_cols=49 Identities=18% Similarity=0.319 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccch-hhhhHHHHHHHHHHHHHHhhHH
Q 044754 13 NVVTFLLSVFIVWFGVLLITTEATECDKF-LQKPVLLLGFFIMIISLIGIRG 63 (172)
Q Consensus 13 N~l~~l~G~~ll~~Giw~~~~~~~~~~~~-~~~~~i~~G~~i~~vs~~G~~G 63 (172)
|++..+.+.+++++|+|...+++ ..+. ...-++.-|+.++++++-++-|
T Consensus 2 ~~~~~~~~~~Lf~iGiy~il~rn--li~~ligl~im~~avnL~~v~~g~~~~ 51 (114)
T PRK12660 2 NLILLLVIGFLVFIGTYMILSIN--LIRIVIGISIYTHAGNLIIMSMGGYGS 51 (114)
T ss_pred chHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 55667777888999999875432 2121 2223455666666666655543
No 77
>PF15345 TMEM51: Transmembrane protein 51
Probab=21.83 E-value=1.3e+02 Score=24.99 Aligned_cols=28 Identities=7% Similarity=-0.035 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHhhHHhhhcchh
Q 044754 43 QKPVLLLGFFIMIISLIGIRGACCHSSG 70 (172)
Q Consensus 43 ~~~~i~~G~~i~~vs~~G~~GA~~e~~~ 70 (172)
...+++.|+++++++++=++=--|+.+-
T Consensus 61 AyVLVG~Gv~LLLLSICL~IR~KRr~rq 88 (233)
T PF15345_consen 61 AYVLVGSGVALLLLSICLSIRDKRRRRQ 88 (233)
T ss_pred EEehhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457889999999887655555555543
No 78
>PRK09094 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=21.80 E-value=2.1e+02 Score=20.98 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHh
Q 044754 15 VTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60 (172)
Q Consensus 15 l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G 60 (172)
+..+...+++++|+|+..+++ -........++.-|+.+++++.-+
T Consensus 4 ~~~~~~~~L~~~G~Y~il~rn-lir~iigl~il~~avnL~lv~~g~ 48 (114)
T PRK09094 4 VLALAIGVLTASGVWLLLRPR-TFQVILGLSLLSYAVNLFIFAMGR 48 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555667899999887543 111223334556666666665554
No 79
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=21.46 E-value=95 Score=26.04 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=22.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhHHhhhcch
Q 044754 41 FLQKPVLLLGFFIMIISLIGIRGACCHSS 69 (172)
Q Consensus 41 ~~~~~~i~~G~~i~~vs~~G~~GA~~e~~ 69 (172)
.+.|.++++|.++++.++++.+=.-|-.+
T Consensus 224 wLwwi~~vlG~ll~lr~~i~YikVrrm~~ 252 (262)
T KOG4812|consen 224 WLWWIFLVLGLLLFLRGFINYIKVRRMEE 252 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhHHH
Confidence 45566789999999999999876555443
No 80
>PRK10209 acid-resistance membrane protein; Provisional
Probab=21.20 E-value=4.1e+02 Score=20.77 Aligned_cols=23 Identities=4% Similarity=0.083 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhHHhhhcch
Q 044754 47 LLLGFFIMIISLIGIRGACCHSS 69 (172)
Q Consensus 47 i~~G~~i~~vs~~G~~GA~~e~~ 69 (172)
+.+|...++-|+.....|.+.++
T Consensus 109 ~l~g~~~iv~Gi~~i~~a~~~~~ 131 (190)
T PRK10209 109 AFIAGLFCVGGIIRLMSGYKQRK 131 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 46777777888888888776543
No 81
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=21.09 E-value=3.2e+02 Score=19.48 Aligned_cols=24 Identities=8% Similarity=-0.092 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 044754 5 CNSLFVVLNVVTFLLSVFIVWFGV 28 (172)
Q Consensus 5 ~~~ll~~~N~l~~l~G~~ll~~Gi 28 (172)
.+|.....++...+.|++-+.-|+
T Consensus 37 ~sy~~~~~~l~yaI~aVvglIGai 60 (98)
T PF13572_consen 37 TSYFDPVTKLMYAIGAVVGLIGAI 60 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666555555544443
No 82
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=20.91 E-value=1.7e+02 Score=24.68 Aligned_cols=47 Identities=17% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHh
Q 044754 14 VVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60 (172)
Q Consensus 14 ~l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G 60 (172)
++|+++|++++.+|+-+.+--...-.+.-...+.=+|++++.+-+++
T Consensus 199 i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv~~~l~a~~~~~ 245 (256)
T PF09788_consen 199 IIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWVGLFLIALICLI 245 (256)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHHHHHHHHHHHHH
No 83
>PRK10263 DNA translocase FtsK; Provisional
Probab=20.62 E-value=1e+03 Score=25.09 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044754 5 CNSLFVVLNVVTFLLSVFIVWFGVLLIT 32 (172)
Q Consensus 5 ~~~ll~~~N~l~~l~G~~ll~~Giw~~~ 32 (172)
+.+++++|-+..+++=+ ++.++.|...
T Consensus 72 AD~L~~LFGl~AYLLP~-LL~~~a~~l~ 98 (1355)
T PRK10263 72 ADTLFFIFGVMAYTIPV-IIVGGCWFAW 98 (1355)
T ss_pred HHHHHHHHhHHHHHHHH-HHHHHHHHHH
Confidence 44555555554444433 3334445443
No 84
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=20.56 E-value=1.2e+02 Score=25.48 Aligned_cols=36 Identities=22% Similarity=0.454 Sum_probs=28.1
Q ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHhhheeeec
Q 044754 63 GACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTN 98 (172)
Q Consensus 63 GA~~e~~~lL~~y~~~l~ll~l~el~~~i~~~~~~~ 98 (172)
|-.-.++.+++++.++|+++.+.-++.+++.+-+=+
T Consensus 5 Gi~Gwrk~cly~~vllL~il~iiNL~LTiwIl~Vl~ 40 (264)
T PF04790_consen 5 GIYGWRKRCLYLFVLLLFILAIINLALTIWILKVLR 40 (264)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHhhhheeee
Confidence 334466788899999999999999999888776543
Done!