Query 044754
Match_columns 172
No_of_seqs 153 out of 798
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 11:02:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044754.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044754hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8q_A CD81 antigen, extracell 54.5 3.2 0.00011 27.0 0.4 24 118-141 34-65 (90)
2 1oed_C Acetylcholine receptor 31.4 1.9E+02 0.0067 22.8 8.2 84 9-95 3-87 (260)
3 3rko_K NADH-quinone oxidoreduc 22.1 1.8E+02 0.0061 19.3 8.0 73 17-95 8-81 (100)
4 4aq5_E Acetylcholine receptor 19.7 3.6E+02 0.012 23.1 7.8 87 9-97 220-307 (488)
5 4aq5_C Acetylcholine receptor 19.4 4.2E+02 0.014 22.9 8.2 87 8-97 247-334 (522)
6 1oed_B Acetylcholine receptor 16.7 3.8E+02 0.013 20.9 7.2 82 9-93 3-85 (250)
7 1rh5_B Preprotein translocase 16.4 90 0.0031 20.2 2.4 16 46-61 38-53 (74)
8 2klu_A T-cell surface glycopro 14.6 1.2E+02 0.0042 19.4 2.5 15 47-61 12-26 (70)
9 4aq5_A Acetylcholine receptor 13.9 3.4E+02 0.012 23.1 6.1 85 8-95 236-321 (461)
10 2ww9_B Protein transport prote 13.7 1.2E+02 0.004 20.0 2.4 17 46-62 51-67 (80)
No 1
>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A
Probab=54.45 E-value=3.2 Score=27.04 Aligned_cols=24 Identities=0% Similarity=-0.105 Sum_probs=17.8
Q ss_pred chhHHhhhc-----CCcCCCc---ccCccccC
Q 044754 118 YSSWLRKRM-----NDEENWR---KIKSCFVA 141 (172)
Q Consensus 118 ~~~~lQ~~~-----~~~~dW~---~~~sC~~~ 141 (172)
..|.+|+.+ ++++||. .+.||+..
T Consensus 34 ~~d~iQ~~l~CCG~~~~~Dw~~~~vP~ScC~~ 65 (90)
T 1g8q_A 34 VVKTFHETLDCCGSSTLTALTTSVLKNNLCPS 65 (90)
T ss_dssp HHHHHHHHHTCCSCTTCGGGHHHHHHTTCSCT
T ss_pred HHHHHHHhhcCCCCCChhhhccCCCCCCCCCC
Confidence 358899997 7999995 25677654
No 2
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=31.39 E-value=1.9e+02 Score=22.83 Aligned_cols=84 Identities=18% Similarity=0.222 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHHHHH
Q 044754 9 FVVLNVVTFLLSVFIVW-FGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVI 87 (172)
Q Consensus 9 l~~~N~l~~l~G~~ll~-~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l~el 87 (172)
.+.+|++.=.+.+.++. +|.|+=.+. .++......+.++..+++.-+.--.=.--++..++..|+.+-+++..+-+
T Consensus 3 ~Y~~nliiP~~li~~ls~~~F~Lp~~~---gekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s~ 79 (260)
T 1oed_C 3 FYVINFITPCVLISFLASLAFYLPAES---GEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVI 79 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred EEEEhHHHHHHHHHHHHHHHeeeCCCC---CCeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 56788877665555554 566765542 22332223344444444444444444445567788888777666666666
Q ss_pred HHHhhhee
Q 044754 88 SLTVFTLA 95 (172)
Q Consensus 88 ~~~i~~~~ 95 (172)
..+++..-
T Consensus 80 ~~tv~vl~ 87 (260)
T 1oed_C 80 VNCGIVLN 87 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHheee
Confidence 55555543
No 3
>3rko_K NADH-quinone oxidoreductase subunit K; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=22.10 E-value=1.8e+02 Score=19.29 Aligned_cols=73 Identities=8% Similarity=0.086 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhhccccccccc-hhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHHHHHHHHhhhee
Q 044754 17 FLLSVFIVWFGVLLITTEATECDK-FLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLA 95 (172)
Q Consensus 17 ~l~G~~ll~~Giw~~~~~~~~~~~-~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l~el~~~i~~~~ 95 (172)
.+.+..+..+|+|....+ .+.-. ....-.+..++.+.++.+.-..+. . .=..+......+-.+|.+.|....+
T Consensus 8 ~~~~~~lf~iGl~g~~~r-~~ll~~LlslE~m~l~v~l~l~~~~~~~~~----~-~~~~~~l~~l~~aa~E~alGLallv 81 (100)
T 3rko_K 8 LILAAILFVLGLTGLVIR-RNLLFMLIGLEIMINASALAFVVAGSYWGQ----T-DGQVMYILAISLAAAEASIGLALLL 81 (100)
T ss_dssp HHHHHHHHHHHHHHHHHC-CBHHHHHHHHHHHHHHHHHHHHHHHHHTTC----S-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----c-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778888855433 22111 122234555665555554433321 1 1122344455566778777665555
No 4
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=19.70 E-value=3.6e+02 Score=23.09 Aligned_cols=87 Identities=15% Similarity=0.218 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHHHHH
Q 044754 9 FVVLNVVTFLLSVFIV-WFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVI 87 (172)
Q Consensus 9 l~~~N~l~~l~G~~ll-~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l~el 87 (172)
.+++|+++=.+-+.++ .++.|+-.+.. .++......+.++..++...+..-.=..-.+..++..|+.+.++++.+-+
T Consensus 220 ~Y~i~l~iP~~liv~Ls~lsF~Lp~~a~--~eRvsLgIt~LLt~tvfl~~v~~~LP~tS~~vPlI~~y~~~~m~lv~~Sl 297 (488)
T 4aq5_E 220 FYIINIIAPCVLISSLVVLVYFLPAQAG--GQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIV 297 (488)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHSC--STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred heehhHhHHHHHHHHHHHHHhcCCcccc--CceEEEehHHHHHHHHHHHHHHhhCCccccCccHHHHHHHHHHHHHHHHH
Confidence 4556666544333333 45666654411 12221111122333333333333333333345677777777666666655
Q ss_pred HHHhhheeee
Q 044754 88 SLTVFTLAVT 97 (172)
Q Consensus 88 ~~~i~~~~~~ 97 (172)
...+++.-+.
T Consensus 298 l~tv~Vlnl~ 307 (488)
T 4aq5_E 298 TNCVIVLNVS 307 (488)
T ss_dssp HHHHHHHHHT
T ss_pred HHHhhEEEEE
Confidence 5555554443
No 5
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=19.41 E-value=4.2e+02 Score=22.92 Aligned_cols=87 Identities=17% Similarity=0.230 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHHHH
Q 044754 8 LFVVLNVVTFLLSVFIV-WFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGV 86 (172)
Q Consensus 8 ll~~~N~l~~l~G~~ll-~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l~e 86 (172)
..+++|++.=.+-+.++ .++.|+-.+. .++......+.++..++...+..-.=..-.+..++..|+.+.++++.+-
T Consensus 247 ~~Yii~l~iP~~liv~Ls~lsF~Lp~d~---~eRisLgIT~LLt~tvfl~~v~~~LP~tS~~vPlI~~y~~~~m~lv~lS 323 (522)
T 4aq5_C 247 LFYVINFITPCVLISFLAALAFYLPAES---GEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGV 323 (522)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTTHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHH
T ss_pred ceeeeehhhHHHHHHHHHHheeecCCCc---CceEEehHHHHHHHHHHHHHHHhcCCcccCCccHHHHHHHHHHHHHHHH
Confidence 34566766544434444 3555654431 1122111122333333333333333333445677788877776666666
Q ss_pred HHHHhhheeee
Q 044754 87 ISLTVFTLAVT 97 (172)
Q Consensus 87 l~~~i~~~~~~ 97 (172)
++..+++.-+.
T Consensus 324 ll~tviVlnl~ 334 (522)
T 4aq5_C 324 VVNCGIVLNFH 334 (522)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHheEEEEE
Confidence 65555554443
No 6
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=16.72 E-value=3.8e+02 Score=20.92 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHHHHH
Q 044754 9 FVVLNVVTFLLSVFIVW-FGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVI 87 (172)
Q Consensus 9 l~~~N~l~~l~G~~ll~-~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l~el 87 (172)
.+.+|++.=.+.+.++. ++.|+-.+. .++......+.++..+++..+.--.=.--+...++..|+.+-++++.+-+
T Consensus 3 ~Y~~nliiP~~li~~ls~~~F~Lp~ds---gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl 79 (250)
T 1oed_B 3 FYIVYTIIPCILISILAILVFYLPPDA---GEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSV 79 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred EEEEhHHHHHHHHHHHHHHHheeCCCC---CCeEEehhhHHHHHHHHHHHHHHHCCCCcccCCcHHHHHHHHHHHHHHHH
Confidence 56778777555555553 566665543 23432223334444444444444444444556777777666555555545
Q ss_pred HHHhhh
Q 044754 88 SLTVFT 93 (172)
Q Consensus 88 ~~~i~~ 93 (172)
...++.
T Consensus 80 ~~tv~V 85 (250)
T 1oed_B 80 ILSVVV 85 (250)
T ss_dssp HHHHHH
T ss_pred HHHhhe
Confidence 444444
No 7
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=16.43 E-value=90 Score=20.22 Aligned_cols=16 Identities=19% Similarity=0.357 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhh
Q 044754 46 VLLLGFFIMIISLIGI 61 (172)
Q Consensus 46 ~i~~G~~i~~vs~~G~ 61 (172)
.-++|+.++++|++|+
T Consensus 38 ak~~~iG~~imG~IGf 53 (74)
T 1rh5_B 38 AKVTALGISLLGIIGY 53 (74)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4466666777888885
No 8
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=14.58 E-value=1.2e+02 Score=19.37 Aligned_cols=15 Identities=27% Similarity=0.549 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhh
Q 044754 47 LLLGFFIMIISLIGI 61 (172)
Q Consensus 47 i~~G~~i~~vs~~G~ 61 (172)
|++|+..-++.|.|+
T Consensus 12 ivlGg~~~lll~~gl 26 (70)
T 2klu_A 12 IVLGGVAGLLLFIGL 26 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 677777666666654
No 9
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=13.88 E-value=3.4e+02 Score=23.06 Aligned_cols=85 Identities=18% Similarity=0.327 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHHHH
Q 044754 8 LFVVLNVVTFLLSVFIV-WFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGV 86 (172)
Q Consensus 8 ll~~~N~l~~l~G~~ll-~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l~e 86 (172)
..+++|++.-.+-+.++ .++.|+-.+.. ++......+.++..++...+.--.-..-+...++..|+.+.++++.+-
T Consensus 236 ~~Y~i~l~iP~~liv~ls~lsF~Lp~~s~---eRv~LgiT~LLt~tvfl~~v~~~LP~tS~~vplI~~y~~~~m~~v~~s 312 (461)
T 4aq5_A 236 LYFVVNVIIPCLLFSFLTVLVFYLPTDSG---EKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISS 312 (461)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHCG---GGTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHH
T ss_pred cceeeehhhhHHHHHHHHHheEecccccc---ceeehhHHHHHHHHHHHHHHHhhcCcccCCcCHHHHHHHHHHHHHHHH
Confidence 35666766644444444 45666644421 333222223333333333333333333334566666766655555555
Q ss_pred HHHHhhhee
Q 044754 87 ISLTVFTLA 95 (172)
Q Consensus 87 l~~~i~~~~ 95 (172)
+...+++.-
T Consensus 313 ll~tv~Vl~ 321 (461)
T 4aq5_A 313 IIVTVVVIN 321 (461)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhhee
Confidence 544444433
No 10
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=13.65 E-value=1.2e+02 Score=20.02 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhH
Q 044754 46 VLLLGFFIMIISLIGIR 62 (172)
Q Consensus 46 ~i~~G~~i~~vs~~G~~ 62 (172)
.-+.|+-++++|+.|+.
T Consensus 51 ak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 51 VKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677777888888864
Done!