Query 044754
Match_columns 172
No_of_seqs 153 out of 798
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 11:02:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044754.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044754hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oedc_ f.36.1.1 (C:) Acetylch 54.2 17 0.0012 26.2 6.6 87 9-98 3-90 (260)
2 d1oedb_ f.36.1.1 (B:) Acetylch 33.0 70 0.0051 22.4 7.2 86 9-97 3-89 (250)
3 d1oeda_ f.36.1.1 (A:) Acetylch 28.0 89 0.0065 21.6 8.3 85 9-96 3-88 (227)
4 d1oede_ f.36.1.1 (E:) Acetylch 27.1 62 0.0045 22.9 6.0 83 9-93 3-86 (260)
5 d1rh5b_ f.23.28.1 (B:) Preprot 15.5 59 0.0043 18.6 2.7 17 46-62 27-43 (56)
6 d1q90l_ f.23.24.1 (L:) PetL su 7.8 1.4E+02 0.011 14.4 3.6 19 12-30 5-23 (32)
7 d1op0a_ b.47.1.2 (A:) Venom se 7.3 73 0.0053 21.5 1.3 20 114-133 212-231 (234)
8 d1y29a_ g.3.6.2 (A:) Huwentoxi 7.0 25 0.0018 16.9 -1.0 10 61-70 18-27 (28)
9 d1v54m_ f.23.7.1 (M:) Mitochon 5.8 2.2E+02 0.016 15.1 2.5 17 47-63 15-31 (43)
10 d1tiha_ g.69.1.1 (A:) Multidom 5.5 1.6E+02 0.011 16.2 1.8 13 127-139 26-38 (53)
No 1
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=54.20 E-value=17 Score=26.16 Aligned_cols=87 Identities=18% Similarity=0.241 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHHHHH
Q 044754 9 FVVLNVVTFLLSV-FIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVI 87 (172)
Q Consensus 9 l~~~N~l~~l~G~-~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l~el 87 (172)
.+++|+++=.+=+ ++-.+|.|+-.+. .++......+.++..++...+....=.--+...++..|+.+.++++.+-+
T Consensus 3 ~y~~n~~~P~~~~~~l~~~~f~lp~~~---~~r~~l~it~lLs~~vf~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s~ 79 (260)
T d1oedc_ 3 FYVINFITPCVLISFLASLAFYLPAES---GEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVI 79 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred eEEEhHHHHHHHHHHHHHHHeeeCCCC---CCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 5677877633222 3335677775542 22432233345555555555555555556677888777777777777777
Q ss_pred HHHhhheeeec
Q 044754 88 SLTVFTLAVTN 98 (172)
Q Consensus 88 ~~~i~~~~~~~ 98 (172)
+.++++..++.
T Consensus 80 ~~t~~Vl~~~~ 90 (260)
T d1oedc_ 80 VNCGIVLNFHF 90 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhheeeee
Confidence 66666655543
No 2
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=33.03 E-value=70 Score=22.43 Aligned_cols=86 Identities=16% Similarity=0.231 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHHHHH
Q 044754 9 FVVLNVVTFLLSVFIV-WFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVI 87 (172)
Q Consensus 9 l~~~N~l~~l~G~~ll-~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l~el 87 (172)
.+++|+++=.+=+.++ .+|.|+-.+. .++......+.++..++...+..-.=.--+...++..|+.+.++++.+-+
T Consensus 3 ~y~~~~~~P~~~i~~l~~~~f~~p~~~---~er~~l~it~lL~~~~~~~~v~~~~P~~s~~~p~i~~~~~~~~~~~~~~~ 79 (250)
T d1oedb_ 3 FYIVYTIIPCILISILAILVFYLPPDA---GEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSV 79 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred EEEEeHHHHHHHHHHHHHHHheecCCC---CCcEEeeHHHHHHHHHHHHHHHHhCCCCcCcchHHHHHHHHHHHHHHHHH
Confidence 5677877643333333 5677775543 22432222344455555555555544444556667777666666665555
Q ss_pred HHHhhheeee
Q 044754 88 SLTVFTLAVT 97 (172)
Q Consensus 88 ~~~i~~~~~~ 97 (172)
...++..-..
T Consensus 80 ~~~~~v~~~~ 89 (250)
T d1oedb_ 80 ILSVVVLNLH 89 (250)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhheeee
Confidence 5555544443
No 3
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=28.05 E-value=89 Score=21.63 Aligned_cols=85 Identities=16% Similarity=0.300 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHHHHH
Q 044754 9 FVVLNVVTFLLSVFIV-WFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVI 87 (172)
Q Consensus 9 l~~~N~l~~l~G~~ll-~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l~el 87 (172)
.+++|+++=.+=+.++ .+|.|+-.+. .++........++..++...+-.-.=..-++..++..|+...++++.+-+
T Consensus 3 yy~~~li~P~~li~~ls~~~F~lp~~s---~eRi~l~it~lL~~~v~~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~sl 79 (227)
T d1oeda_ 3 YFVVNVIIPCLLFSFLTGLVFYLPTDS---GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSI 79 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred EEEehHHHHHHHHHHHHHHHheecCCC---CccEEeeHHHHHHHHHHHHHHHHhCCCcccCcCccchHHHHHHHHHHHHH
Confidence 4667776644333333 4677775442 23432222334444444444444333333455666777666666665555
Q ss_pred HHHhhheee
Q 044754 88 SLTVFTLAV 96 (172)
Q Consensus 88 ~~~i~~~~~ 96 (172)
+..++....
T Consensus 80 i~tiiV~~l 88 (227)
T d1oeda_ 80 IITVVVINT 88 (227)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhe
Confidence 555555443
No 4
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=27.08 E-value=62 Score=22.88 Aligned_cols=83 Identities=13% Similarity=0.172 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhccccccccchhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHHHHHHHHHHHH
Q 044754 9 FVVLNVVTFLLSVFIV-WFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVI 87 (172)
Q Consensus 9 l~~~N~l~~l~G~~ll-~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~~l~ll~l~el 87 (172)
.+++|+++=.+=+.++ .+|.|+-.+. ..++......+.++..++...+-.-.=..-+...++..|+...++++.+-+
T Consensus 3 yY~~~lilP~~li~~ls~~~F~lp~~~--~g~Rv~l~it~lLs~~~~~~~v~~~lP~tS~~vPli~~~~~~~~~~v~~sl 80 (260)
T d1oede_ 3 FYIINIIAPCVLISSLVVLVYFLPAQA--GGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIV 80 (260)
T ss_dssp SHHHHHHTHHHHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred EEEEhHHHHHHHHHHHHHHheEecCCC--CCCcEEeehhHHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHH
Confidence 3566766543333333 4666775542 123432222233444444444444333333455677666555555554444
Q ss_pred HHHhhh
Q 044754 88 SLTVFT 93 (172)
Q Consensus 88 ~~~i~~ 93 (172)
...+++
T Consensus 81 ~~t~iV 86 (260)
T d1oede_ 81 MNCVIV 86 (260)
T ss_dssp HHHHHH
T ss_pred HHHHhe
Confidence 444444
No 5
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=15.50 E-value=59 Score=18.56 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhH
Q 044754 46 VLLLGFFIMIISLIGIR 62 (172)
Q Consensus 46 ~i~~G~~i~~vs~~G~~ 62 (172)
..+.|+-++++|+.|+.
T Consensus 27 a~v~~iG~~i~G~IGf~ 43 (56)
T d1rh5b_ 27 AKVTALGISLLGIIGYI 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667667888888853
No 6
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.76 E-value=1.4e+02 Score=14.44 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 044754 12 LNVVTFLLSVFIVWFGVLL 30 (172)
Q Consensus 12 ~N~l~~l~G~~ll~~Giw~ 30 (172)
...+=++.|.+.+..|+|+
T Consensus 5 ~syvglligal~~tlgiyl 23 (32)
T d1q90l_ 5 TSYVGLLIGALVFTLGIYL 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444566777777788876
No 7
>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}
Probab=7.32 E-value=73 Score=21.49 Aligned_cols=20 Identities=15% Similarity=0.582 Sum_probs=15.3
Q ss_pred ccccchhHHhhhcCCcCCCc
Q 044754 114 RMDDYSSWLRKRMNDEENWR 133 (172)
Q Consensus 114 ~~~~~~~~lQ~~~~~~~dW~ 133 (172)
|+..|.+|+++.+.+..+|.
T Consensus 212 ~v~~y~~WI~~~i~~~~~~~ 231 (234)
T d1op0a_ 212 NVFDYTDWIQRNIAGNTDAT 231 (234)
T ss_dssp ESGGGHHHHHHHHHTCTTCC
T ss_pred EHHHHHHHHHHHHhhcCCCC
Confidence 46778899999987666653
No 8
>d1y29a_ g.3.6.2 (A:) Huwentoxin-X {Spider (Selenocosmia hainana) [TaxId: 209901]}
Probab=7.02 E-value=25 Score=16.89 Aligned_cols=10 Identities=30% Similarity=0.667 Sum_probs=6.2
Q ss_pred hHHhhhcchh
Q 044754 61 IRGACCHSSG 70 (172)
Q Consensus 61 ~~GA~~e~~~ 70 (172)
|||.+.+|+|
T Consensus 18 ccgvcshnkc 27 (28)
T d1y29a_ 18 CCGVCSHNKC 27 (28)
T ss_dssp BSSCBSSSCB
T ss_pred ceeeeccccc
Confidence 5666666655
No 9
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.77 E-value=2.2e+02 Score=15.07 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhHH
Q 044754 47 LLLGFFIMIISLIGIRG 63 (172)
Q Consensus 47 i~~G~~i~~vs~~G~~G 63 (172)
.++|.-++.++|+|=.|
T Consensus 15 ~aigLt~~f~~~L~PaG 31 (43)
T d1v54m_ 15 QAIGLSVTFLSFLLPAG 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHH
Confidence 46777788888887665
No 10
>d1tiha_ g.69.1.1 (A:) Multidomain proteinase inhibitor {Winged tobacco (Nicotiana alata) [TaxId: 4087]}
Probab=5.53 E-value=1.6e+02 Score=16.25 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=10.8
Q ss_pred CCcCCCcccCccc
Q 044754 127 NDEENWRKIKSCF 139 (172)
Q Consensus 127 ~~~~dW~~~~sC~ 139 (172)
.+.+||..++.|.
T Consensus 26 eGesdp~nPK~Cp 38 (53)
T d1tiha_ 26 EGESDPRNPKACP 38 (53)
T ss_dssp CCCCCSSSSCCCT
T ss_pred CCCCCCCCCCcCC
Confidence 6788999898885
Done!