Query 044755
Match_columns 1079
No_of_seqs 531 out of 4858
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 06:29:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.7E-86 8E-91 791.2 48.0 740 13-819 9-788 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.3E-63 2.9E-68 634.6 55.8 685 153-990 182-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2E-41 4.4E-46 370.8 18.2 273 160-435 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 5.5E-29 1.2E-33 319.5 25.3 480 504-1052 92-590 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.8E-28 3.9E-33 314.7 27.5 484 505-1056 69-570 (968)
6 KOG4194 Membrane glycoprotein 99.9 2.1E-22 4.5E-27 215.8 7.2 391 504-1016 51-448 (873)
7 KOG0472 Leucine-rich repeat pr 99.8 3.4E-23 7.3E-28 212.4 -9.1 111 914-1045 430-540 (565)
8 KOG0444 Cytoskeletal regulator 99.8 3.5E-22 7.6E-27 215.0 -2.9 172 504-692 6-183 (1255)
9 KOG4194 Membrane glycoprotein 99.8 9.2E-21 2E-25 203.3 7.6 398 556-1077 80-492 (873)
10 PLN03210 Resistant to P. syrin 99.8 2.6E-19 5.7E-24 229.3 21.3 325 504-877 557-909 (1153)
11 KOG0618 Serine/threonine phosp 99.8 2.9E-20 6.2E-25 210.8 2.7 460 529-1067 23-510 (1081)
12 KOG0472 Leucine-rich repeat pr 99.8 4.9E-21 1.1E-25 196.7 -5.7 201 506-712 69-283 (565)
13 KOG0444 Cytoskeletal regulator 99.8 8.8E-21 1.9E-25 204.4 -4.6 314 503-845 53-380 (1255)
14 KOG0618 Serine/threonine phosp 99.7 2.9E-18 6.3E-23 194.7 -4.5 398 525-1020 43-489 (1081)
15 KOG0617 Ras suppressor protein 99.4 3.4E-15 7.4E-20 136.0 -3.6 165 518-700 24-191 (264)
16 KOG0617 Ras suppressor protein 99.4 2.6E-14 5.7E-19 130.3 -2.2 151 504-660 32-186 (264)
17 PRK15387 E3 ubiquitin-protein 99.4 3.3E-12 7.1E-17 151.6 14.6 94 554-660 201-295 (788)
18 PRK04841 transcriptional regul 99.3 1.8E-10 3.9E-15 147.9 24.5 290 155-481 14-332 (903)
19 KOG4237 Extracellular matrix p 99.3 4E-13 8.7E-18 139.1 -0.0 124 531-658 71-199 (498)
20 PRK15387 E3 ubiquitin-protein 99.3 3.5E-11 7.6E-16 142.9 15.6 252 508-838 204-456 (788)
21 PRK00411 cdc6 cell division co 99.2 8.9E-09 1.9E-13 118.1 29.7 284 155-459 30-356 (394)
22 PRK15370 E3 ubiquitin-protein 99.2 1.1E-10 2.4E-15 139.8 13.9 242 509-811 182-425 (754)
23 KOG4658 Apoptotic ATPase [Sign 99.2 1.6E-11 3.5E-16 149.2 5.8 98 554-652 545-647 (889)
24 TIGR03015 pepcterm_ATPase puta 99.2 4.2E-09 9.1E-14 113.9 23.9 181 173-357 40-242 (269)
25 PRK15370 E3 ubiquitin-protein 99.2 9.7E-11 2.1E-15 140.3 11.9 95 555-659 200-295 (754)
26 TIGR02928 orc1/cdc6 family rep 99.0 1.6E-07 3.4E-12 106.7 30.6 286 156-460 16-349 (365)
27 PF01637 Arch_ATPase: Archaeal 99.0 6.9E-10 1.5E-14 117.6 10.4 193 157-352 1-233 (234)
28 PF05729 NACHT: NACHT domain 99.0 2E-09 4.2E-14 107.2 12.3 142 177-323 1-163 (166)
29 COG2909 MalT ATP-dependent tra 99.0 1.3E-08 2.8E-13 117.3 18.8 289 156-482 20-339 (894)
30 KOG4237 Extracellular matrix p 99.0 5.4E-11 1.2E-15 123.6 -1.3 75 583-657 73-150 (498)
31 PRK00080 ruvB Holliday junctio 98.9 1.2E-07 2.5E-12 105.1 19.3 247 151-422 21-282 (328)
32 KOG1259 Nischarin, modulator o 98.9 5.5E-10 1.2E-14 111.6 0.7 136 552-700 282-417 (490)
33 TIGR00635 ruvB Holliday juncti 98.8 3.6E-07 7.8E-12 100.7 22.5 187 155-355 4-203 (305)
34 PF14580 LRR_9: Leucine-rich r 98.8 3.1E-09 6.7E-14 103.3 5.0 103 555-659 20-125 (175)
35 cd00116 LRR_RI Leucine-rich re 98.8 1.3E-09 2.8E-14 121.7 2.4 138 549-694 18-177 (319)
36 KOG4341 F-box protein containi 98.8 1.3E-10 2.8E-15 122.0 -6.8 121 918-1047 319-440 (483)
37 PF14580 LRR_9: Leucine-rich r 98.8 8.2E-09 1.8E-13 100.4 5.5 135 515-655 7-148 (175)
38 KOG0532 Leucine-rich repeat (L 98.7 8.3E-10 1.8E-14 120.2 -2.3 134 551-700 95-229 (722)
39 cd00116 LRR_RI Leucine-rich re 98.7 1.1E-08 2.4E-13 114.1 5.0 162 526-695 22-206 (319)
40 PTZ00112 origin recognition co 98.7 1.3E-06 2.9E-11 101.7 21.0 203 155-358 755-987 (1164)
41 KOG4341 F-box protein containi 98.7 7E-10 1.5E-14 116.6 -5.6 268 717-1040 189-459 (483)
42 PRK06893 DNA replication initi 98.7 2.6E-07 5.7E-12 96.2 13.5 152 174-353 37-203 (229)
43 COG2256 MGS1 ATPase related to 98.6 5E-07 1.1E-11 95.7 13.6 171 151-347 20-206 (436)
44 PRK13342 recombination factor 98.6 6.7E-07 1.4E-11 102.2 15.1 178 152-355 9-198 (413)
45 KOG0532 Leucine-rich repeat (L 98.6 4.7E-09 1E-13 114.5 -2.5 135 551-701 118-253 (722)
46 COG1474 CDC6 Cdc6-related prot 98.5 6.6E-06 1.4E-10 90.8 20.7 199 157-356 19-241 (366)
47 COG3899 Predicted ATPase [Gene 98.5 4.7E-06 1E-10 102.7 20.3 259 157-426 2-333 (849)
48 TIGR03420 DnaA_homol_Hda DnaA 98.5 1.4E-06 3.1E-11 91.4 12.5 168 160-355 22-203 (226)
49 PF13173 AAA_14: AAA domain 98.5 3.9E-07 8.5E-12 85.4 7.2 119 176-314 2-126 (128)
50 PRK07003 DNA polymerase III su 98.4 1.4E-05 3E-10 93.2 20.8 186 151-354 12-222 (830)
51 KOG1259 Nischarin, modulator o 98.4 4.2E-08 9.1E-13 98.4 -0.4 104 553-659 306-411 (490)
52 PRK04195 replication factor C 98.4 2.3E-05 5E-10 91.5 22.1 251 151-440 10-277 (482)
53 PF05496 RuvB_N: Holliday junc 98.4 5E-06 1.1E-10 82.5 13.7 175 151-354 20-222 (233)
54 PRK14961 DNA polymerase III su 98.4 1.1E-05 2.4E-10 90.4 18.2 178 151-350 12-217 (363)
55 PRK12402 replication factor C 98.4 6E-06 1.3E-10 92.7 16.1 199 151-351 11-224 (337)
56 KOG3207 Beta-tubulin folding c 98.4 8.2E-08 1.8E-12 101.9 0.9 58 552-609 119-182 (505)
57 PRK14949 DNA polymerase III su 98.4 5.6E-06 1.2E-10 98.4 15.4 183 151-351 12-218 (944)
58 PRK05564 DNA polymerase III su 98.4 9.6E-06 2.1E-10 89.2 16.4 175 155-351 4-188 (313)
59 KOG2028 ATPase related to the 98.4 6E-06 1.3E-10 85.6 13.4 148 154-323 137-294 (554)
60 PLN03025 replication factor C 98.3 7.3E-06 1.6E-10 90.4 14.3 181 151-347 9-194 (319)
61 COG3903 Predicted ATPase [Gene 98.3 1.9E-06 4.1E-11 92.3 8.9 290 175-482 13-315 (414)
62 KOG3207 Beta-tubulin folding c 98.3 1.5E-07 3.3E-12 99.9 0.3 188 504-698 120-317 (505)
63 COG4886 Leucine-rich repeat (L 98.3 6.1E-07 1.3E-11 103.1 5.3 174 551-755 113-288 (394)
64 cd01128 rho_factor Transcripti 98.3 2.4E-06 5.1E-11 88.9 8.7 92 175-267 15-115 (249)
65 cd00009 AAA The AAA+ (ATPases 98.3 6.2E-06 1.3E-10 80.1 11.3 122 159-294 2-131 (151)
66 PRK14963 DNA polymerase III su 98.3 2.5E-05 5.4E-10 90.3 17.7 178 151-350 10-214 (504)
67 PF13401 AAA_22: AAA domain; P 98.3 3.6E-06 7.9E-11 79.7 9.2 115 176-292 4-125 (131)
68 PRK12323 DNA polymerase III su 98.3 1.3E-05 2.8E-10 92.2 15.0 180 151-352 12-224 (700)
69 PRK14960 DNA polymerase III su 98.3 1.5E-05 3.4E-10 91.9 15.7 182 151-350 11-216 (702)
70 PRK09376 rho transcription ter 98.2 2.8E-06 6E-11 91.8 8.7 100 166-266 158-267 (416)
71 PRK06645 DNA polymerase III su 98.2 3.7E-05 7.9E-10 88.4 18.2 177 151-349 17-225 (507)
72 PRK08727 hypothetical protein; 98.2 1.6E-05 3.4E-10 83.1 13.9 168 155-350 19-201 (233)
73 COG4886 Leucine-rich repeat (L 98.2 9.9E-07 2.1E-11 101.3 5.4 157 525-699 114-272 (394)
74 PRK00440 rfc replication facto 98.2 3.4E-05 7.4E-10 85.8 17.2 183 151-350 13-200 (319)
75 PTZ00202 tuzin; Provisional 98.2 6.8E-05 1.5E-09 81.4 17.9 164 150-323 257-434 (550)
76 TIGR02903 spore_lon_C ATP-depe 98.2 2.7E-05 5.9E-10 92.8 16.6 203 152-356 151-398 (615)
77 PRK14956 DNA polymerase III su 98.2 1.4E-05 3.1E-10 89.7 13.2 194 151-348 14-217 (484)
78 PF13855 LRR_8: Leucine rich r 98.2 1.9E-06 4.1E-11 68.6 4.4 56 555-610 2-60 (61)
79 TIGR00678 holB DNA polymerase 98.2 4.6E-05 9.9E-10 77.1 15.7 160 166-349 3-187 (188)
80 PRK13341 recombination factor 98.2 1.3E-05 2.7E-10 96.4 12.8 171 151-347 24-211 (725)
81 PRK14957 DNA polymerase III su 98.1 4.9E-05 1.1E-09 88.0 16.7 187 151-355 12-223 (546)
82 PRK08084 DNA replication initi 98.1 2.5E-05 5.4E-10 81.7 13.0 161 163-352 32-208 (235)
83 TIGR02397 dnaX_nterm DNA polym 98.1 9E-05 1.9E-09 83.8 18.4 183 152-353 11-218 (355)
84 PRK09112 DNA polymerase III su 98.1 8.2E-05 1.8E-09 82.0 17.1 197 151-353 19-240 (351)
85 PRK15386 type III secretion pr 98.1 7.7E-06 1.7E-10 89.5 8.8 16 802-817 73-88 (426)
86 PRK07940 DNA polymerase III su 98.1 8.7E-05 1.9E-09 83.0 17.3 170 155-352 5-212 (394)
87 PF13191 AAA_16: AAA ATPase do 98.1 9.2E-06 2E-10 82.3 8.8 72 157-230 2-81 (185)
88 PRK07994 DNA polymerase III su 98.1 3.7E-05 8.1E-10 90.3 14.6 194 151-352 12-219 (647)
89 PRK14962 DNA polymerase III su 98.1 8.2E-05 1.8E-09 85.3 17.1 189 151-357 10-223 (472)
90 KOG2227 Pre-initiation complex 98.1 0.00014 3E-09 78.9 17.5 205 153-357 148-376 (529)
91 PRK08691 DNA polymerase III su 98.1 3.7E-05 8E-10 89.8 14.2 182 151-350 12-217 (709)
92 PLN03150 hypothetical protein; 98.1 5.1E-06 1.1E-10 99.9 7.6 103 555-658 419-526 (623)
93 PRK09087 hypothetical protein; 98.1 4.8E-05 1E-09 78.7 13.6 139 175-352 43-194 (226)
94 PRK14964 DNA polymerase III su 98.1 8.1E-05 1.8E-09 84.8 16.4 181 151-349 9-213 (491)
95 TIGR01242 26Sp45 26S proteasom 98.1 6.8E-05 1.5E-09 84.4 15.9 173 153-347 120-328 (364)
96 PRK14958 DNA polymerase III su 98.1 4.9E-05 1.1E-09 88.2 15.0 182 151-350 12-217 (509)
97 PRK07471 DNA polymerase III su 98.1 0.00014 3E-09 80.7 17.4 198 151-353 15-238 (365)
98 PRK05896 DNA polymerase III su 98.1 7.9E-05 1.7E-09 86.2 15.9 197 151-355 12-223 (605)
99 PRK14951 DNA polymerase III su 98.0 0.0001 2.2E-09 86.6 16.9 195 151-350 12-222 (618)
100 PF13855 LRR_8: Leucine rich r 98.0 6.1E-06 1.3E-10 65.6 4.8 60 527-589 1-61 (61)
101 PLN03150 hypothetical protein; 98.0 7.5E-06 1.6E-10 98.5 7.5 107 528-637 419-530 (623)
102 PRK14955 DNA polymerase III su 98.0 9.9E-05 2.2E-09 83.8 15.5 198 151-349 12-224 (397)
103 TIGR00767 rho transcription te 98.0 3.1E-05 6.7E-10 84.4 9.8 92 175-267 167-267 (415)
104 PRK15386 type III secretion pr 98.0 1E-05 2.2E-10 88.6 6.1 62 916-990 49-110 (426)
105 KOG0989 Replication factor C, 97.9 4.8E-05 1E-09 77.9 9.8 184 150-346 31-223 (346)
106 PRK14969 DNA polymerase III su 97.9 0.00015 3.1E-09 84.9 15.3 184 152-353 13-221 (527)
107 PRK08903 DnaA regulatory inact 97.9 0.00011 2.3E-09 77.1 12.9 163 163-357 28-203 (227)
108 KOG2120 SCF ubiquitin ligase, 97.9 4.4E-07 9.6E-12 91.4 -4.7 38 717-754 259-296 (419)
109 PRK14087 dnaA chromosomal repl 97.9 0.00013 2.9E-09 83.6 14.4 165 177-355 142-321 (450)
110 PRK14959 DNA polymerase III su 97.9 0.00018 3.9E-09 83.8 15.5 185 151-357 12-225 (624)
111 KOG0531 Protein phosphatase 1, 97.9 3.4E-06 7.3E-11 97.0 1.3 108 550-660 91-199 (414)
112 PRK08451 DNA polymerase III su 97.9 0.00033 7.1E-09 80.8 16.9 184 151-353 10-218 (535)
113 PRK14971 DNA polymerase III su 97.9 0.00022 4.8E-09 84.7 16.1 178 152-348 14-217 (614)
114 TIGR02881 spore_V_K stage V sp 97.9 0.00016 3.4E-09 77.3 13.5 134 175-324 41-192 (261)
115 PF00308 Bac_DnaA: Bacterial d 97.9 7.4E-05 1.6E-09 77.0 10.4 159 176-351 34-206 (219)
116 PRK14970 DNA polymerase III su 97.9 0.00042 9E-09 78.4 17.4 180 151-348 13-204 (367)
117 PRK09111 DNA polymerase III su 97.9 0.0003 6.6E-09 82.9 16.6 197 151-352 20-232 (598)
118 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3E-10 58.0 3.4 37 555-591 2-38 (44)
119 PRK14954 DNA polymerase III su 97.9 0.00033 7.2E-09 82.6 16.8 202 151-353 12-229 (620)
120 PHA02544 44 clamp loader, smal 97.9 0.00017 3.7E-09 80.0 13.8 148 151-321 17-171 (316)
121 PRK05642 DNA replication initi 97.8 0.00013 2.8E-09 76.2 11.4 149 177-353 46-208 (234)
122 PRK07764 DNA polymerase III su 97.8 0.0004 8.7E-09 84.8 16.8 179 151-348 11-216 (824)
123 TIGR02639 ClpA ATP-dependent C 97.8 0.00025 5.4E-09 87.2 15.2 158 153-323 180-358 (731)
124 PRK07133 DNA polymerase III su 97.8 0.00056 1.2E-08 81.1 17.3 181 151-354 14-221 (725)
125 CHL00181 cbbX CbbX; Provisiona 97.8 0.00074 1.6E-08 72.6 16.9 131 177-323 60-209 (287)
126 KOG1909 Ran GTPase-activating 97.8 2.9E-06 6.3E-11 88.0 -1.4 13 742-754 239-251 (382)
127 TIGR03345 VI_ClpV1 type VI sec 97.8 0.0003 6.6E-09 87.0 15.6 180 152-345 184-388 (852)
128 PRK03992 proteasome-activating 97.8 0.00031 6.6E-09 79.4 14.3 171 154-346 130-336 (389)
129 PF14516 AAA_35: AAA-like doma 97.8 0.0016 3.5E-08 71.9 19.6 201 152-360 8-246 (331)
130 PRK14952 DNA polymerase III su 97.8 0.00058 1.3E-08 80.0 16.8 185 151-357 9-224 (584)
131 COG2255 RuvB Holliday junction 97.8 0.0031 6.8E-08 64.3 19.4 177 151-356 22-226 (332)
132 PRK14953 DNA polymerase III su 97.8 0.0011 2.3E-08 76.7 18.6 180 151-352 12-219 (486)
133 PRK06305 DNA polymerase III su 97.7 0.001 2.2E-08 76.4 17.5 184 152-354 14-224 (451)
134 PF05621 TniB: Bacterial TniB 97.7 0.00092 2E-08 70.1 15.4 186 161-350 43-258 (302)
135 TIGR02880 cbbX_cfxQ probable R 97.7 0.00084 1.8E-08 72.3 15.8 130 178-323 60-208 (284)
136 PRK14950 DNA polymerase III su 97.7 0.0011 2.3E-08 79.3 17.9 195 151-352 12-220 (585)
137 PRK06647 DNA polymerase III su 97.7 0.0012 2.6E-08 77.6 17.3 177 151-350 12-217 (563)
138 KOG1859 Leucine-rich repeat pr 97.7 1.5E-06 3.2E-11 97.9 -6.4 126 555-694 165-291 (1096)
139 KOG2120 SCF ubiquitin ligase, 97.7 4E-06 8.6E-11 84.7 -2.9 40 619-658 310-349 (419)
140 PRK14948 DNA polymerase III su 97.7 0.0016 3.4E-08 77.5 18.2 194 152-351 13-220 (620)
141 PRK11331 5-methylcytosine-spec 97.6 0.0003 6.4E-09 78.3 11.1 107 156-267 176-284 (459)
142 CHL00095 clpC Clp protease ATP 97.6 0.00061 1.3E-08 84.9 15.0 157 154-323 178-354 (821)
143 COG1222 RPT1 ATP-dependent 26S 97.6 0.004 8.6E-08 65.8 18.2 199 150-372 146-392 (406)
144 TIGR00362 DnaA chromosomal rep 97.6 0.00066 1.4E-08 77.8 13.8 156 177-349 137-306 (405)
145 PTZ00454 26S protease regulato 97.6 0.0011 2.4E-08 74.5 15.0 173 153-347 143-351 (398)
146 KOG2982 Uncharacterized conser 97.6 1.7E-05 3.8E-10 80.2 0.5 43 800-843 223-265 (418)
147 PRK05563 DNA polymerase III su 97.6 0.002 4.2E-08 76.2 17.6 191 151-349 12-216 (559)
148 KOG2543 Origin recognition com 97.6 0.00049 1.1E-08 72.9 11.1 164 155-323 6-193 (438)
149 KOG3665 ZYG-1-like serine/thre 97.6 3.5E-05 7.6E-10 92.2 2.8 125 505-632 122-260 (699)
150 TIGR03689 pup_AAA proteasome A 97.6 0.0013 2.9E-08 75.4 15.1 160 153-325 180-380 (512)
151 COG0466 Lon ATP-dependent Lon 97.6 0.0041 9E-08 71.6 18.7 154 156-323 324-508 (782)
152 KOG0531 Protein phosphatase 1, 97.5 1.2E-05 2.6E-10 92.5 -1.4 140 512-659 79-220 (414)
153 COG1373 Predicted ATPase (AAA+ 97.5 0.00098 2.1E-08 75.3 13.9 135 160-318 22-162 (398)
154 PRK14965 DNA polymerase III su 97.5 0.00094 2E-08 79.3 14.2 180 151-353 12-221 (576)
155 PRK14088 dnaA chromosomal repl 97.5 0.0012 2.7E-08 75.6 14.3 155 176-347 130-299 (440)
156 TIGR00763 lon ATP-dependent pr 97.5 0.0024 5.2E-08 79.2 17.8 46 156-201 321-372 (775)
157 PRK06620 hypothetical protein; 97.5 0.00052 1.1E-08 70.3 10.0 131 177-348 45-184 (214)
158 PF12799 LRR_4: Leucine Rich r 97.5 0.00011 2.3E-09 53.3 3.5 33 600-632 2-34 (44)
159 KOG3665 ZYG-1-like serine/thre 97.5 5.6E-05 1.2E-09 90.5 3.1 105 527-632 122-230 (699)
160 PTZ00361 26 proteosome regulat 97.5 0.0016 3.6E-08 73.6 14.1 173 153-347 181-389 (438)
161 PF00004 AAA: ATPase family as 97.4 0.00043 9.2E-09 65.5 8.1 69 179-267 1-70 (132)
162 KOG1859 Leucine-rich repeat pr 97.4 7.3E-06 1.6E-10 92.5 -4.7 123 504-632 163-289 (1096)
163 PRK14086 dnaA chromosomal repl 97.4 0.0023 5E-08 74.4 15.1 154 177-347 315-482 (617)
164 TIGR01241 FtsH_fam ATP-depende 97.4 0.0036 7.8E-08 73.6 17.0 173 153-347 53-260 (495)
165 KOG1909 Ran GTPase-activating 97.4 8.2E-05 1.8E-09 77.6 2.8 165 550-730 54-253 (382)
166 PRK00149 dnaA chromosomal repl 97.4 0.0015 3.2E-08 75.9 13.5 157 176-349 148-318 (450)
167 PRK12422 chromosomal replicati 97.4 0.0012 2.6E-08 75.5 12.1 150 177-345 142-305 (445)
168 PRK07399 DNA polymerase III su 97.4 0.013 2.9E-07 63.7 19.7 193 155-353 4-221 (314)
169 KOG2004 Mitochondrial ATP-depe 97.4 0.0047 1E-07 70.7 16.0 155 155-323 411-596 (906)
170 COG0593 DnaA ATPase involved i 97.4 0.0046 1E-07 68.3 15.7 130 175-323 112-257 (408)
171 CHL00176 ftsH cell division pr 97.3 0.003 6.4E-08 75.3 15.0 170 155-346 183-387 (638)
172 PRK05707 DNA polymerase III su 97.3 0.0042 9.1E-08 68.0 14.9 154 176-353 22-203 (328)
173 PRK10536 hypothetical protein; 97.3 0.0026 5.7E-08 65.4 12.3 55 154-210 54-108 (262)
174 smart00382 AAA ATPases associa 97.3 0.00065 1.4E-08 65.2 7.9 90 177-269 3-92 (148)
175 PRK11034 clpA ATP-dependent Cl 97.3 0.0018 3.8E-08 78.6 13.1 157 154-323 185-362 (758)
176 TIGR00602 rad24 checkpoint pro 97.3 0.00087 1.9E-08 79.0 10.0 52 150-201 79-135 (637)
177 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0043 9.3E-08 77.7 16.2 157 153-323 171-349 (852)
178 PF05673 DUF815: Protein of un 97.3 0.013 2.8E-07 59.7 16.1 51 153-203 25-79 (249)
179 KOG2982 Uncharacterized conser 97.2 9.9E-05 2.1E-09 74.9 1.1 81 551-631 68-155 (418)
180 KOG1947 Leucine rich repeat pr 97.2 2.3E-05 4.9E-10 93.2 -4.2 121 717-840 187-308 (482)
181 COG3267 ExeA Type II secretory 97.2 0.012 2.6E-07 59.5 15.4 180 173-356 48-248 (269)
182 PRK10865 protein disaggregatio 97.2 0.0042 9.2E-08 77.3 15.3 157 153-323 176-354 (857)
183 PRK10787 DNA-binding ATP-depen 97.2 0.006 1.3E-07 74.8 16.0 155 155-323 322-506 (784)
184 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0058 1.3E-07 68.7 13.8 171 154-346 189-395 (802)
185 KOG0731 AAA+-type ATPase conta 97.2 0.005 1.1E-07 72.5 14.0 176 154-350 310-521 (774)
186 KOG4579 Leucine-rich repeat (L 97.2 9.2E-05 2E-09 66.3 -0.1 90 551-641 50-141 (177)
187 PRK08769 DNA polymerase III su 97.1 0.015 3.3E-07 63.0 16.3 173 161-353 10-208 (319)
188 KOG4579 Leucine-rich repeat (L 97.1 6.8E-05 1.5E-09 67.2 -1.5 102 554-657 27-133 (177)
189 PRK06090 DNA polymerase III su 97.1 0.04 8.6E-07 59.8 19.0 162 162-353 10-201 (319)
190 PRK08118 topology modulation p 97.1 0.00033 7.1E-09 68.8 2.8 35 177-211 2-37 (167)
191 KOG0741 AAA+-type ATPase [Post 97.1 0.015 3.2E-07 64.3 15.4 157 175-357 537-716 (744)
192 PRK08058 DNA polymerase III su 97.0 0.016 3.5E-07 64.0 15.9 145 157-322 7-181 (329)
193 COG1223 Predicted ATPase (AAA+ 97.0 0.0084 1.8E-07 60.1 11.9 170 155-346 121-318 (368)
194 PRK12608 transcription termina 97.0 0.0067 1.4E-07 66.1 11.9 102 164-266 120-231 (380)
195 CHL00195 ycf46 Ycf46; Provisio 97.0 0.0088 1.9E-07 68.9 13.4 152 176-347 259-429 (489)
196 PRK08116 hypothetical protein; 96.9 0.0026 5.6E-08 67.7 8.3 102 177-293 115-221 (268)
197 PRK06871 DNA polymerase III su 96.9 0.037 7.9E-07 60.2 16.9 176 162-350 9-200 (325)
198 PF10443 RNA12: RNA12 protein; 96.9 0.046 1E-06 60.3 17.6 191 160-360 1-285 (431)
199 KOG0736 Peroxisome assembly fa 96.8 0.047 1E-06 63.5 17.2 166 156-345 673-877 (953)
200 KOG1644 U2-associated snRNP A' 96.8 0.002 4.4E-08 62.2 5.5 82 550-631 60-149 (233)
201 PF04665 Pox_A32: Poxvirus A32 96.8 0.004 8.7E-08 63.9 7.9 37 177-215 14-50 (241)
202 TIGR03345 VI_ClpV1 type VI sec 96.8 0.015 3.2E-07 72.4 14.2 105 156-267 567-680 (852)
203 TIGR02640 gas_vesic_GvpN gas v 96.7 0.032 7E-07 59.5 14.9 57 162-225 9-65 (262)
204 PHA00729 NTP-binding motif con 96.7 0.0087 1.9E-07 60.7 9.7 35 166-200 7-41 (226)
205 PF13177 DNA_pol3_delta2: DNA 96.7 0.011 2.4E-07 57.7 10.1 134 159-310 1-161 (162)
206 PRK08181 transposase; Validate 96.7 0.002 4.4E-08 68.0 5.2 105 169-293 101-209 (269)
207 TIGR02639 ClpA ATP-dependent C 96.7 0.021 4.6E-07 70.5 14.7 102 156-267 455-565 (731)
208 PF00448 SRP54: SRP54-type pro 96.7 0.011 2.3E-07 59.7 10.0 87 176-264 1-92 (196)
209 PRK07261 topology modulation p 96.7 0.0059 1.3E-07 60.3 8.0 34 178-211 2-36 (171)
210 KOG0730 AAA+-type ATPase [Post 96.7 0.029 6.2E-07 64.3 14.1 151 155-325 434-617 (693)
211 COG5238 RNA1 Ran GTPase-activa 96.6 0.00018 4E-09 72.0 -2.8 244 552-810 28-312 (388)
212 KOG2123 Uncharacterized conser 96.6 0.00027 5.8E-09 71.2 -1.9 80 576-657 18-98 (388)
213 TIGR03346 chaperone_ClpB ATP-d 96.6 0.025 5.4E-07 71.0 14.7 105 156-267 566-679 (852)
214 KOG0734 AAA+-type ATPase conta 96.6 0.0063 1.4E-07 67.2 8.1 93 155-267 304-408 (752)
215 TIGR01243 CDC48 AAA family ATP 96.6 0.037 7.9E-07 68.7 15.7 171 155-347 453-657 (733)
216 PRK10865 protein disaggregatio 96.5 0.032 6.8E-07 69.8 14.9 59 156-216 569-636 (857)
217 PLN00020 ribulose bisphosphate 96.5 0.066 1.4E-06 57.9 14.8 149 174-348 146-333 (413)
218 KOG2228 Origin recognition com 96.5 0.059 1.3E-06 56.7 13.7 166 156-323 25-219 (408)
219 KOG0739 AAA+-type ATPase [Post 96.5 1.4 3E-05 45.8 23.4 91 157-267 135-237 (439)
220 KOG1644 U2-associated snRNP A' 96.4 0.0028 6.1E-08 61.3 3.8 77 555-632 43-123 (233)
221 KOG1514 Origin recognition com 96.4 0.13 2.8E-06 59.6 17.5 198 156-357 397-625 (767)
222 PRK08939 primosomal protein Dn 96.4 0.011 2.4E-07 64.0 8.9 116 159-292 135-260 (306)
223 KOG0728 26S proteasome regulat 96.4 0.057 1.2E-06 53.8 12.4 130 174-323 179-331 (404)
224 PRK07993 DNA polymerase III su 96.4 0.13 2.7E-06 56.7 16.8 164 162-350 9-201 (334)
225 KOG0733 Nuclear AAA ATPase (VC 96.4 0.035 7.5E-07 62.8 12.2 129 176-324 545-693 (802)
226 TIGR02237 recomb_radB DNA repa 96.3 0.018 3.9E-07 59.3 9.7 47 176-225 12-58 (209)
227 PRK06964 DNA polymerase III su 96.3 0.16 3.4E-06 55.8 17.2 103 242-353 115-225 (342)
228 TIGR01243 CDC48 AAA family ATP 96.3 0.038 8.3E-07 68.5 14.1 174 154-349 177-383 (733)
229 PRK12377 putative replication 96.3 0.02 4.3E-07 59.8 9.8 75 175-266 100-174 (248)
230 COG2812 DnaX DNA polymerase II 96.3 0.016 3.4E-07 66.3 9.6 188 151-346 12-213 (515)
231 PF01695 IstB_IS21: IstB-like 96.3 0.0024 5.2E-08 63.3 2.8 74 176-267 47-120 (178)
232 KOG0991 Replication factor C, 96.3 0.0088 1.9E-07 58.9 6.2 103 151-267 23-125 (333)
233 COG0542 clpA ATP-binding subun 96.3 0.069 1.5E-06 63.9 14.7 103 157-267 493-605 (786)
234 COG1484 DnaC DNA replication p 96.3 0.024 5.1E-07 59.8 9.9 83 166-267 97-179 (254)
235 PRK14722 flhF flagellar biosyn 96.2 0.022 4.8E-07 62.9 10.0 89 176-266 137-226 (374)
236 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.025 5.5E-07 59.5 10.3 55 176-231 19-77 (235)
237 PF13207 AAA_17: AAA domain; P 96.2 0.0043 9.4E-08 57.5 3.8 23 178-200 1-23 (121)
238 PRK11034 clpA ATP-dependent Cl 96.2 0.047 1E-06 66.6 13.4 102 156-267 459-569 (758)
239 PRK06526 transposase; Provisio 96.2 0.0049 1.1E-07 64.9 4.4 74 176-267 98-171 (254)
240 KOG2123 Uncharacterized conser 96.2 0.00056 1.2E-08 69.0 -2.5 99 554-653 19-123 (388)
241 smart00763 AAA_PrkA PrkA AAA d 96.2 0.0073 1.6E-07 65.6 5.7 47 156-202 52-104 (361)
242 KOG0735 AAA+-type ATPase [Post 96.2 0.042 9.1E-07 63.2 11.7 150 176-346 431-608 (952)
243 KOG2035 Replication factor C, 96.2 0.17 3.8E-06 51.7 14.8 203 156-373 14-259 (351)
244 TIGR03499 FlhF flagellar biosy 96.2 0.027 5.8E-07 60.7 10.0 88 175-264 193-281 (282)
245 PRK11889 flhF flagellar biosyn 96.2 0.055 1.2E-06 59.3 12.2 90 175-266 240-331 (436)
246 cd01133 F1-ATPase_beta F1 ATP 96.2 0.027 5.9E-07 59.1 9.7 90 176-266 69-174 (274)
247 KOG1947 Leucine rich repeat pr 96.1 0.00086 1.9E-08 79.7 -1.8 116 918-1046 268-389 (482)
248 COG2884 FtsE Predicted ATPase 96.1 0.023 4.9E-07 54.7 8.0 122 176-301 28-205 (223)
249 KOG2739 Leucine-rich acidic nu 96.1 0.0026 5.7E-08 64.4 1.7 100 553-653 42-149 (260)
250 TIGR02012 tigrfam_recA protein 96.1 0.022 4.8E-07 61.6 8.7 85 175-266 54-144 (321)
251 PRK06995 flhF flagellar biosyn 96.1 0.46 1E-05 54.5 19.6 60 176-235 256-316 (484)
252 TIGR02902 spore_lonB ATP-depen 96.0 0.025 5.4E-07 66.7 9.7 49 152-200 62-110 (531)
253 COG1875 NYN ribonuclease and A 96.0 0.016 3.4E-07 61.5 7.0 54 156-209 225-279 (436)
254 PRK07952 DNA replication prote 96.0 0.05 1.1E-06 56.7 10.8 89 163-267 84-174 (244)
255 KOG0727 26S proteasome regulat 96.0 0.41 8.9E-06 48.0 16.1 95 153-267 153-260 (408)
256 KOG0743 AAA+-type ATPase [Post 96.0 0.15 3.3E-06 56.3 14.5 149 177-357 236-413 (457)
257 PRK09183 transposase/IS protei 96.0 0.012 2.7E-07 62.3 6.3 25 177-201 103-127 (259)
258 TIGR01425 SRP54_euk signal rec 96.0 0.35 7.7E-06 54.5 17.9 58 175-234 99-157 (429)
259 PRK09354 recA recombinase A; P 95.9 0.031 6.6E-07 61.0 9.0 85 175-266 59-149 (349)
260 cd00983 recA RecA is a bacter 95.9 0.027 5.8E-07 60.9 8.4 84 176-266 55-144 (325)
261 PRK14723 flhF flagellar biosyn 95.9 0.52 1.1E-05 56.9 19.8 88 176-265 185-273 (767)
262 PF08423 Rad51: Rad51; InterP 95.9 0.073 1.6E-06 56.3 11.6 57 176-233 38-98 (256)
263 PRK06696 uridine kinase; Valid 95.8 0.015 3.2E-07 60.5 6.0 43 159-201 2-47 (223)
264 PRK06835 DNA replication prote 95.8 0.013 2.8E-07 64.0 5.7 101 177-293 184-289 (329)
265 PF07693 KAP_NTPase: KAP famil 95.8 0.38 8.3E-06 53.5 17.8 42 162-203 3-47 (325)
266 PRK05541 adenylylsulfate kinas 95.8 0.03 6.6E-07 55.8 7.9 37 175-213 6-42 (176)
267 PRK06921 hypothetical protein; 95.8 0.046 9.9E-07 58.2 9.5 71 175-264 116-186 (266)
268 PRK04132 replication factor C 95.7 0.19 4.2E-06 61.5 15.5 151 184-351 574-729 (846)
269 cd01120 RecA-like_NTPases RecA 95.6 0.074 1.6E-06 52.2 10.1 40 178-219 1-40 (165)
270 PRK12727 flagellar biosynthesi 95.6 0.052 1.1E-06 62.0 9.7 88 176-265 350-438 (559)
271 cd01393 recA_like RecA is a b 95.6 0.077 1.7E-06 55.5 10.6 49 176-224 19-71 (226)
272 COG1066 Sms Predicted ATP-depe 95.6 0.057 1.2E-06 58.6 9.4 86 176-267 93-180 (456)
273 COG1102 Cmk Cytidylate kinase 95.6 0.037 8.1E-07 51.8 6.9 46 178-236 2-47 (179)
274 COG0470 HolB ATPase involved i 95.6 0.058 1.3E-06 60.1 10.3 139 157-311 3-169 (325)
275 COG0464 SpoVK ATPases of the A 95.6 0.23 4.9E-06 58.8 15.6 131 175-325 275-425 (494)
276 COG1618 Predicted nucleotide k 95.6 0.017 3.8E-07 53.9 4.7 35 177-212 6-40 (179)
277 PRK09270 nucleoside triphospha 95.6 0.072 1.6E-06 55.6 10.1 29 174-202 31-59 (229)
278 CHL00095 clpC Clp protease ATP 95.6 0.046 1E-06 68.4 10.0 106 155-267 509-623 (821)
279 KOG1969 DNA replication checkp 95.5 0.033 7.1E-07 64.4 7.6 73 176-267 326-399 (877)
280 TIGR02238 recomb_DMC1 meiotic 95.5 0.071 1.5E-06 58.0 9.9 58 176-234 96-157 (313)
281 PTZ00494 tuzin-like protein; P 95.5 2.5 5.5E-05 46.8 21.0 163 152-323 368-544 (664)
282 PRK12724 flagellar biosynthesi 95.5 0.064 1.4E-06 59.7 9.5 84 176-263 223-307 (432)
283 KOG0652 26S proteasome regulat 95.5 0.4 8.7E-06 48.3 13.9 55 147-201 163-230 (424)
284 PLN03187 meiotic recombination 95.5 0.079 1.7E-06 58.1 10.1 59 175-234 125-187 (344)
285 PRK12726 flagellar biosynthesi 95.4 0.11 2.4E-06 56.9 10.9 90 175-266 205-296 (407)
286 PF00006 ATP-synt_ab: ATP synt 95.4 0.055 1.2E-06 55.1 8.2 96 167-266 5-116 (215)
287 TIGR01359 UMP_CMP_kin_fam UMP- 95.3 0.053 1.2E-06 54.5 7.9 24 178-201 1-24 (183)
288 cd03115 SRP The signal recogni 95.3 0.083 1.8E-06 52.5 9.1 54 178-233 2-56 (173)
289 COG0542 clpA ATP-binding subun 95.3 0.055 1.2E-06 64.6 8.8 159 153-323 168-346 (786)
290 PRK00771 signal recognition pa 95.3 0.11 2.4E-06 59.0 10.9 87 175-265 94-185 (437)
291 PRK09361 radB DNA repair and r 95.3 0.11 2.5E-06 54.1 10.3 45 176-223 23-67 (225)
292 PRK08533 flagellar accessory p 95.3 0.13 2.8E-06 53.5 10.6 53 176-233 24-76 (230)
293 PF05659 RPW8: Arabidopsis bro 95.3 0.19 4.2E-06 47.5 10.6 110 2-127 3-113 (147)
294 PRK08699 DNA polymerase III su 95.3 0.4 8.6E-06 52.6 14.8 153 176-349 21-202 (325)
295 PRK10733 hflB ATP-dependent me 95.3 0.11 2.4E-06 63.0 11.4 148 177-346 186-356 (644)
296 PRK10867 signal recognition pa 95.2 0.21 4.6E-06 56.7 12.7 27 175-201 99-125 (433)
297 PRK14974 cell division protein 95.2 0.17 3.7E-06 55.4 11.6 89 175-266 139-233 (336)
298 PRK12723 flagellar biosynthesi 95.2 0.18 3.9E-06 56.4 12.0 90 175-266 173-265 (388)
299 TIGR00959 ffh signal recogniti 95.2 0.22 4.8E-06 56.4 12.8 89 175-265 98-192 (428)
300 COG1419 FlhF Flagellar GTP-bin 95.2 0.23 5E-06 54.6 12.3 100 162-264 185-290 (407)
301 PRK04296 thymidine kinase; Pro 95.2 0.024 5.3E-07 57.1 4.7 110 177-294 3-117 (190)
302 PRK05703 flhF flagellar biosyn 95.1 0.078 1.7E-06 60.4 9.1 86 177-264 222-308 (424)
303 TIGR02858 spore_III_AA stage I 95.1 0.11 2.3E-06 55.2 9.5 126 165-297 99-233 (270)
304 cd01121 Sms Sms (bacterial rad 95.1 0.073 1.6E-06 59.4 8.7 86 176-266 82-169 (372)
305 cd01135 V_A-ATPase_B V/A-type 95.1 0.11 2.4E-06 54.4 9.3 92 176-267 69-178 (276)
306 KOG2739 Leucine-rich acidic nu 95.1 0.0099 2.2E-07 60.3 1.5 83 550-632 61-153 (260)
307 TIGR00554 panK_bact pantothena 95.1 0.12 2.7E-06 55.2 9.8 28 174-201 60-87 (290)
308 PRK15455 PrkA family serine pr 95.0 0.027 5.9E-07 64.4 5.0 46 156-201 77-128 (644)
309 TIGR03877 thermo_KaiC_1 KaiC d 95.0 0.15 3.3E-06 53.5 10.4 53 175-232 20-72 (237)
310 TIGR02236 recomb_radA DNA repa 95.0 0.15 3.3E-06 56.1 10.7 57 176-233 95-155 (310)
311 TIGR02239 recomb_RAD51 DNA rep 95.0 0.11 2.3E-06 56.9 9.3 58 175-233 95-156 (316)
312 PF00560 LRR_1: Leucine Rich R 94.9 0.014 3E-07 35.1 1.3 21 555-575 1-21 (22)
313 PLN03186 DNA repair protein RA 94.9 0.11 2.4E-06 57.0 9.3 58 176-234 123-184 (342)
314 PRK07667 uridine kinase; Provi 94.9 0.04 8.6E-07 55.7 5.5 38 164-201 3-42 (193)
315 COG0468 RecA RecA/RadA recombi 94.9 0.17 3.8E-06 53.4 10.3 90 175-266 59-152 (279)
316 cd02025 PanK Pantothenate kina 94.9 0.12 2.7E-06 53.2 9.1 24 178-201 1-24 (220)
317 PRK06547 hypothetical protein; 94.9 0.042 9E-07 54.1 5.3 34 168-201 7-40 (172)
318 COG1428 Deoxynucleoside kinase 94.9 0.022 4.8E-07 56.1 3.2 26 176-201 4-29 (216)
319 KOG0737 AAA+-type ATPase [Post 94.9 0.37 8E-06 51.8 12.4 27 175-201 126-152 (386)
320 KOG0735 AAA+-type ATPase [Post 94.8 0.7 1.5E-05 53.7 15.1 149 177-347 702-870 (952)
321 PTZ00035 Rad51 protein; Provis 94.8 0.18 3.9E-06 55.6 10.6 58 175-233 117-178 (337)
322 KOG0744 AAA+-type ATPase [Post 94.8 0.055 1.2E-06 56.4 5.9 28 176-203 177-204 (423)
323 COG1121 ZnuC ABC-type Mn/Zn tr 94.7 0.075 1.6E-06 54.8 6.9 119 177-298 31-204 (254)
324 PRK04301 radA DNA repair and r 94.7 0.18 4E-06 55.5 10.5 58 175-233 101-162 (317)
325 PRK14721 flhF flagellar biosyn 94.7 0.21 4.5E-06 56.3 10.9 87 176-264 191-278 (420)
326 CHL00206 ycf2 Ycf2; Provisiona 94.7 0.18 3.8E-06 65.5 11.2 27 176-202 1630-1656(2281)
327 COG0467 RAD55 RecA-superfamily 94.7 0.22 4.8E-06 53.2 10.8 55 174-233 21-75 (260)
328 cd01394 radB RadB. The archaea 94.7 0.15 3.2E-06 52.9 9.2 43 175-219 18-60 (218)
329 PF07728 AAA_5: AAA domain (dy 94.7 0.077 1.7E-06 50.5 6.5 75 179-266 2-76 (139)
330 PF00154 RecA: recA bacterial 94.7 0.25 5.4E-06 53.4 10.9 85 176-267 53-143 (322)
331 cd03247 ABCC_cytochrome_bd The 94.6 0.1 2.3E-06 52.0 7.5 26 176-201 28-53 (178)
332 PF13238 AAA_18: AAA domain; P 94.6 0.03 6.5E-07 52.4 3.5 22 179-200 1-22 (129)
333 COG4088 Predicted nucleotide k 94.6 0.037 7.9E-07 53.8 3.8 26 177-202 2-27 (261)
334 PRK05439 pantothenate kinase; 94.6 0.25 5.4E-06 53.3 10.6 81 174-256 84-166 (311)
335 cd02019 NK Nucleoside/nucleoti 94.5 0.033 7.2E-07 45.3 3.1 23 178-200 1-23 (69)
336 PRK04328 hypothetical protein; 94.5 0.17 3.8E-06 53.4 9.4 54 175-233 22-75 (249)
337 KOG0729 26S proteasome regulat 94.5 0.17 3.6E-06 51.1 8.3 95 153-267 175-282 (435)
338 PRK12597 F0F1 ATP synthase sub 94.5 0.15 3.3E-06 57.9 9.3 90 176-266 143-248 (461)
339 TIGR00064 ftsY signal recognit 94.5 0.24 5.2E-06 52.9 10.3 58 175-234 71-129 (272)
340 PF06309 Torsin: Torsin; Inte 94.4 0.34 7.4E-06 44.0 9.5 44 157-200 27-77 (127)
341 COG0488 Uup ATPase components 94.4 0.54 1.2E-05 55.0 13.7 130 176-308 348-510 (530)
342 COG5238 RNA1 Ran GTPase-activa 94.4 0.017 3.8E-07 58.3 1.4 219 551-784 55-313 (388)
343 cd01124 KaiC KaiC is a circadi 94.4 0.19 4E-06 50.7 9.0 45 178-226 1-45 (187)
344 PF00485 PRK: Phosphoribulokin 94.4 0.038 8.2E-07 56.1 3.8 25 178-202 1-25 (194)
345 PRK08972 fliI flagellum-specif 94.4 0.12 2.6E-06 58.0 8.0 88 176-267 162-264 (444)
346 TIGR01040 V-ATPase_V1_B V-type 94.4 0.16 3.4E-06 57.2 8.8 91 176-266 141-258 (466)
347 TIGR03305 alt_F1F0_F1_bet alte 94.4 0.16 3.5E-06 57.3 9.0 91 176-267 138-244 (449)
348 COG0194 Gmk Guanylate kinase [ 94.3 0.2 4.3E-06 48.6 8.2 25 176-200 4-28 (191)
349 PTZ00185 ATPase alpha subunit; 94.3 0.28 6E-06 55.6 10.6 92 176-267 189-301 (574)
350 COG0541 Ffh Signal recognition 94.3 5.1 0.00011 44.5 19.8 60 175-236 99-159 (451)
351 PRK06067 flagellar accessory p 94.3 0.26 5.7E-06 51.7 10.1 53 175-232 24-76 (234)
352 PF12775 AAA_7: P-loop contain 94.3 0.029 6.3E-07 59.8 2.8 90 164-267 22-112 (272)
353 COG0563 Adk Adenylate kinase a 94.3 0.082 1.8E-06 52.3 5.8 24 178-201 2-25 (178)
354 PRK09280 F0F1 ATP synthase sub 94.3 0.19 4.1E-06 57.0 9.2 90 176-266 144-249 (463)
355 cd01125 repA Hexameric Replica 94.3 0.25 5.5E-06 52.0 9.9 140 178-317 3-198 (239)
356 PF13671 AAA_33: AAA domain; P 94.3 0.042 9.2E-07 52.6 3.7 23 178-200 1-23 (143)
357 PF00560 LRR_1: Leucine Rich R 94.2 0.019 4.1E-07 34.5 0.8 19 601-619 2-20 (22)
358 cd02027 APSK Adenosine 5'-phos 94.2 0.26 5.6E-06 47.4 9.1 24 178-201 1-24 (149)
359 cd03238 ABC_UvrA The excision 94.2 0.16 3.4E-06 50.3 7.6 119 176-307 21-161 (176)
360 cd03281 ABC_MSH5_euk MutS5 hom 94.2 0.057 1.2E-06 55.4 4.7 24 176-199 29-52 (213)
361 PF02562 PhoH: PhoH-like prote 94.2 0.06 1.3E-06 54.1 4.6 125 161-294 6-157 (205)
362 cd03223 ABCD_peroxisomal_ALDP 94.2 0.2 4.4E-06 49.2 8.4 124 176-307 27-160 (166)
363 cd03228 ABCC_MRP_Like The MRP 94.2 0.13 2.7E-06 51.0 7.0 26 176-201 28-53 (171)
364 cd01131 PilT Pilus retraction 94.2 0.081 1.8E-06 53.7 5.7 110 177-296 2-112 (198)
365 PRK08233 hypothetical protein; 94.1 0.044 9.4E-07 55.1 3.7 26 176-201 3-28 (182)
366 COG0465 HflB ATP-dependent Zn 94.1 0.28 6E-06 57.2 10.4 172 154-347 149-355 (596)
367 TIGR02655 circ_KaiC circadian 94.1 0.24 5.2E-06 58.0 10.2 55 175-234 262-316 (484)
368 PRK08927 fliI flagellum-specif 94.1 0.2 4.4E-06 56.5 9.0 88 175-266 157-259 (442)
369 PRK13531 regulatory ATPase Rav 94.1 0.074 1.6E-06 60.2 5.6 49 156-206 21-69 (498)
370 COG4608 AppF ABC-type oligopep 94.0 0.21 4.5E-06 51.7 8.2 122 175-300 38-177 (268)
371 PF01583 APS_kinase: Adenylyls 94.0 0.078 1.7E-06 50.6 4.8 28 176-203 2-29 (156)
372 PF08433 KTI12: Chromatin asso 94.0 0.16 3.4E-06 54.0 7.7 26 177-202 2-27 (270)
373 PRK08149 ATP synthase SpaL; Va 94.0 0.17 3.8E-06 56.9 8.3 89 175-267 150-253 (428)
374 PRK07132 DNA polymerase III su 94.0 1.9 4E-05 46.7 15.9 166 164-352 5-184 (299)
375 COG3640 CooC CO dehydrogenase 94.0 0.12 2.6E-06 51.8 6.1 51 178-236 2-52 (255)
376 PRK06002 fliI flagellum-specif 94.0 0.15 3.2E-06 57.6 7.7 89 176-267 165-266 (450)
377 PRK05480 uridine/cytidine kina 94.0 0.056 1.2E-06 55.6 4.2 27 174-200 4-30 (209)
378 TIGR01041 ATP_syn_B_arch ATP s 94.0 0.18 3.8E-06 57.5 8.4 92 176-267 141-250 (458)
379 PRK10463 hydrogenase nickel in 93.9 0.68 1.5E-05 49.2 12.1 96 165-266 93-195 (290)
380 PTZ00301 uridine kinase; Provi 93.9 0.056 1.2E-06 55.0 4.0 26 176-201 3-28 (210)
381 PRK06762 hypothetical protein; 93.9 0.056 1.2E-06 53.3 3.8 24 177-200 3-26 (166)
382 PF03205 MobB: Molybdopterin g 93.9 0.11 2.4E-06 49.1 5.6 39 177-216 1-39 (140)
383 TIGR00235 udk uridine kinase. 93.8 0.064 1.4E-06 55.1 4.2 28 174-201 4-31 (207)
384 COG2607 Predicted ATPase (AAA+ 93.8 0.33 7.2E-06 48.8 8.7 98 155-278 60-165 (287)
385 PRK03839 putative kinase; Prov 93.8 0.056 1.2E-06 54.1 3.6 24 178-201 2-25 (180)
386 TIGR01360 aden_kin_iso1 adenyl 93.7 0.062 1.3E-06 54.3 3.9 26 175-200 2-27 (188)
387 TIGR03878 thermo_KaiC_2 KaiC d 93.7 0.38 8.3E-06 51.1 10.0 39 176-216 36-74 (259)
388 PRK13765 ATP-dependent proteas 93.7 0.13 2.7E-06 61.4 6.9 78 152-233 28-105 (637)
389 PF00910 RNA_helicase: RNA hel 93.7 0.052 1.1E-06 48.8 2.9 23 179-201 1-23 (107)
390 PF03308 ArgK: ArgK protein; 93.7 0.17 3.6E-06 52.1 6.8 63 164-226 15-79 (266)
391 cd03216 ABC_Carb_Monos_I This 93.7 0.099 2.2E-06 51.2 5.1 115 176-297 26-146 (163)
392 PRK01184 hypothetical protein; 93.6 0.34 7.4E-06 48.6 9.1 22 177-199 2-23 (184)
393 PF13481 AAA_25: AAA domain; P 93.6 0.32 7E-06 49.3 9.0 41 177-217 33-81 (193)
394 PF14532 Sigma54_activ_2: Sigm 93.6 0.029 6.2E-07 53.3 1.1 43 159-201 2-46 (138)
395 TIGR00416 sms DNA repair prote 93.6 0.28 6E-06 56.6 9.3 87 175-266 93-181 (454)
396 TIGR01039 atpD ATP synthase, F 93.6 0.4 8.6E-06 54.2 10.1 92 175-267 142-249 (461)
397 cd01132 F1_ATPase_alpha F1 ATP 93.6 0.39 8.4E-06 50.5 9.4 94 176-273 69-180 (274)
398 PRK11823 DNA repair protein Ra 93.6 0.22 4.7E-06 57.4 8.4 86 176-266 80-167 (446)
399 TIGR00390 hslU ATP-dependent p 93.6 0.21 4.6E-06 55.4 7.8 76 156-231 13-104 (441)
400 cd01134 V_A-ATPase_A V/A-type 93.5 0.36 7.7E-06 52.3 9.2 58 166-227 146-205 (369)
401 PRK00625 shikimate kinase; Pro 93.5 0.062 1.4E-06 52.9 3.3 24 178-201 2-25 (173)
402 COG0572 Udk Uridine kinase [Nu 93.5 0.076 1.6E-06 53.3 3.9 28 175-202 7-34 (218)
403 KOG3347 Predicted nucleotide k 93.5 0.07 1.5E-06 49.1 3.2 40 176-222 7-46 (176)
404 PRK04040 adenylate kinase; Pro 93.4 0.074 1.6E-06 53.3 3.8 46 177-233 3-48 (188)
405 COG1703 ArgK Putative periplas 93.4 0.13 2.8E-06 53.6 5.5 65 165-229 38-104 (323)
406 KOG1532 GTPase XAB1, interacts 93.4 0.096 2.1E-06 53.2 4.4 60 175-234 18-86 (366)
407 PRK06936 type III secretion sy 93.4 0.28 6.1E-06 55.3 8.5 89 175-267 161-264 (439)
408 cd03214 ABC_Iron-Siderophores_ 93.4 0.35 7.5E-06 48.4 8.6 118 176-297 25-162 (180)
409 cd00561 CobA_CobO_BtuR ATP:cor 93.4 0.44 9.6E-06 45.8 8.7 115 177-294 3-139 (159)
410 KOG3864 Uncharacterized conser 93.3 0.0098 2.1E-07 57.8 -2.5 15 974-988 151-165 (221)
411 TIGR03574 selen_PSTK L-seryl-t 93.3 0.22 4.7E-06 52.9 7.4 24 178-201 1-24 (249)
412 PF06745 KaiC: KaiC; InterPro 93.3 0.19 4.1E-06 52.4 6.8 54 175-232 18-71 (226)
413 PRK09519 recA DNA recombinatio 93.3 0.33 7.1E-06 58.8 9.4 85 175-266 59-149 (790)
414 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.3 0.15 3.3E-06 48.7 5.5 104 176-298 26-132 (144)
415 PTZ00088 adenylate kinase 1; P 93.2 0.11 2.4E-06 53.7 4.9 23 179-201 9-31 (229)
416 cd03246 ABCC_Protease_Secretio 93.2 0.2 4.3E-06 49.7 6.6 25 176-200 28-52 (173)
417 KOG3864 Uncharacterized conser 93.2 0.022 4.7E-07 55.4 -0.4 69 771-841 122-190 (221)
418 TIGR00150 HI0065_YjeE ATPase, 93.2 0.15 3.3E-06 47.2 5.2 27 176-202 22-48 (133)
419 PRK05342 clpX ATP-dependent pr 93.2 0.24 5.3E-06 56.0 7.9 46 156-201 72-133 (412)
420 cd01136 ATPase_flagellum-secre 93.2 0.33 7.2E-06 52.7 8.5 87 176-266 69-170 (326)
421 cd00544 CobU Adenosylcobinamid 93.2 0.37 8.1E-06 47.2 8.1 81 179-265 2-83 (169)
422 PF10236 DAP3: Mitochondrial r 93.2 3.2 6.9E-05 45.4 16.2 46 304-349 258-305 (309)
423 COG0003 ArsA Predicted ATPase 93.1 0.18 3.9E-06 54.7 6.3 49 176-226 2-50 (322)
424 KOG0738 AAA+-type ATPase [Post 93.1 1.2 2.5E-05 48.2 12.0 25 177-201 246-270 (491)
425 PRK10416 signal recognition pa 93.1 1.1 2.4E-05 49.0 12.5 28 175-202 113-140 (318)
426 PF13306 LRR_5: Leucine rich r 93.1 0.26 5.5E-06 46.0 6.7 114 525-648 10-127 (129)
427 PRK05922 type III secretion sy 93.1 0.42 9.1E-06 53.9 9.3 88 176-267 157-259 (434)
428 COG3854 SpoIIIAA ncharacterize 93.1 0.31 6.8E-06 48.5 7.2 118 167-296 128-256 (308)
429 PRK09099 type III secretion sy 93.0 0.26 5.7E-06 55.8 7.7 90 175-267 162-265 (441)
430 CHL00060 atpB ATP synthase CF1 93.0 0.37 8.1E-06 54.9 8.8 91 176-267 161-274 (494)
431 PF13245 AAA_19: Part of AAA d 93.0 0.27 5.7E-06 40.8 5.8 26 175-200 9-35 (76)
432 COG1224 TIP49 DNA helicase TIP 92.9 0.2 4.4E-06 53.2 6.1 54 154-207 38-96 (450)
433 PRK04196 V-type ATP synthase s 92.9 0.4 8.7E-06 54.9 9.0 90 176-266 143-251 (460)
434 PRK00889 adenylylsulfate kinas 92.8 0.12 2.6E-06 51.5 4.3 27 175-201 3-29 (175)
435 TIGR03881 KaiC_arch_4 KaiC dom 92.8 0.9 1.9E-05 47.5 11.1 54 175-233 19-72 (229)
436 cd00267 ABC_ATPase ABC (ATP-bi 92.8 0.21 4.6E-06 48.6 5.8 114 177-298 26-145 (157)
437 PRK10751 molybdopterin-guanine 92.8 0.13 2.7E-06 50.3 4.1 28 175-202 5-32 (173)
438 PF07724 AAA_2: AAA domain (Cd 92.7 0.14 3.1E-06 50.3 4.5 43 176-219 3-45 (171)
439 PRK06851 hypothetical protein; 92.7 1.4 3.1E-05 48.7 12.6 44 173-217 211-254 (367)
440 cd02024 NRK1 Nicotinamide ribo 92.7 0.087 1.9E-06 52.4 3.0 23 178-200 1-23 (187)
441 PRK05688 fliI flagellum-specif 92.7 0.36 7.9E-06 54.6 8.1 88 176-267 168-270 (451)
442 TIGR02030 BchI-ChlI magnesium 92.6 0.19 4.1E-06 55.2 5.8 46 155-200 4-49 (337)
443 CHL00081 chlI Mg-protoporyphyr 92.6 0.15 3.2E-06 56.0 4.9 48 154-201 16-63 (350)
444 PRK12678 transcription termina 92.6 0.38 8.2E-06 55.2 8.2 100 166-266 405-514 (672)
445 PRK00131 aroK shikimate kinase 92.6 0.11 2.4E-06 51.6 3.8 26 176-201 4-29 (175)
446 PF13504 LRR_7: Leucine rich r 92.6 0.076 1.6E-06 29.5 1.3 17 1033-1050 1-17 (17)
447 PF13306 LRR_5: Leucine rich r 92.6 0.3 6.6E-06 45.5 6.4 105 546-656 4-112 (129)
448 PRK07594 type III secretion sy 92.5 0.31 6.8E-06 55.0 7.4 89 175-267 154-257 (433)
449 COG2019 AdkA Archaeal adenylat 92.5 0.13 2.8E-06 48.5 3.6 47 176-234 4-50 (189)
450 TIGR03498 FliI_clade3 flagella 92.5 0.41 8.8E-06 54.0 8.3 88 176-266 140-241 (418)
451 TIGR00073 hypB hydrogenase acc 92.5 0.14 3E-06 52.6 4.3 32 170-201 16-47 (207)
452 cd02020 CMPK Cytidine monophos 92.5 0.099 2.1E-06 50.2 3.1 24 178-201 1-24 (147)
453 PF03215 Rad17: Rad17 cell cyc 92.5 0.19 4.1E-06 58.5 5.8 57 155-215 19-80 (519)
454 cd03283 ABC_MutS-like MutS-lik 92.4 0.5 1.1E-05 47.9 8.2 24 177-200 26-49 (199)
455 TIGR03324 alt_F1F0_F1_al alter 92.4 0.58 1.3E-05 53.5 9.4 88 176-267 162-266 (497)
456 cd02029 PRK_like Phosphoribulo 92.4 0.56 1.2E-05 48.9 8.4 76 178-255 1-84 (277)
457 PRK06217 hypothetical protein; 92.4 0.1 2.3E-06 52.2 3.3 34 178-212 3-38 (183)
458 cd02023 UMPK Uridine monophosp 92.4 0.093 2E-06 53.5 2.9 23 178-200 1-23 (198)
459 TIGR02974 phageshock_pspF psp 92.4 0.33 7.1E-06 53.6 7.3 57 158-216 2-60 (329)
460 TIGR01069 mutS2 MutS2 family p 92.3 0.13 2.8E-06 63.3 4.5 182 175-372 321-520 (771)
461 TIGR01817 nifA Nif-specific re 92.3 0.29 6.3E-06 58.4 7.4 62 154-217 195-258 (534)
462 PF07726 AAA_3: ATPase family 92.3 0.13 2.9E-06 46.7 3.4 23 179-201 2-24 (131)
463 TIGR03496 FliI_clade1 flagella 92.3 0.42 9E-06 54.0 8.1 87 176-266 137-238 (411)
464 PRK11608 pspF phage shock prot 92.3 0.23 5E-06 54.8 6.0 60 156-217 7-68 (326)
465 PRK13949 shikimate kinase; Pro 92.2 0.12 2.6E-06 50.9 3.3 24 178-201 3-26 (169)
466 TIGR00708 cobA cob(I)alamin ad 92.2 0.7 1.5E-05 45.0 8.4 117 176-293 5-140 (173)
467 PF02374 ArsA_ATPase: Anion-tr 92.2 0.24 5.2E-06 53.9 5.9 46 177-224 2-47 (305)
468 TIGR02322 phosphon_PhnN phosph 92.2 0.13 2.8E-06 51.5 3.6 25 177-201 2-26 (179)
469 PRK07721 fliI flagellum-specif 92.2 0.43 9.3E-06 54.4 8.1 89 175-266 157-259 (438)
470 cd00227 CPT Chloramphenicol (C 92.2 0.13 2.7E-06 51.2 3.5 25 177-201 3-27 (175)
471 PF03266 NTPase_1: NTPase; In 92.2 0.19 4.2E-06 49.2 4.7 23 179-201 2-24 (168)
472 cd02021 GntK Gluconate kinase 92.2 0.11 2.4E-06 50.2 2.9 23 178-200 1-23 (150)
473 PLN02924 thymidylate kinase 92.2 0.84 1.8E-05 47.0 9.5 53 176-229 16-68 (220)
474 PRK14529 adenylate kinase; Pro 92.1 0.51 1.1E-05 48.4 7.8 83 179-266 3-87 (223)
475 cd02028 UMPK_like Uridine mono 92.1 0.12 2.7E-06 51.4 3.3 24 178-201 1-24 (179)
476 PRK13407 bchI magnesium chelat 92.1 0.21 4.6E-06 54.7 5.4 48 153-200 6-53 (334)
477 PRK13947 shikimate kinase; Pro 92.1 0.12 2.7E-06 51.1 3.4 24 178-201 3-26 (171)
478 KOG0651 26S proteasome regulat 92.1 0.3 6.4E-06 51.0 5.9 28 176-203 166-193 (388)
479 PF08477 Miro: Miro-like prote 92.1 0.13 2.9E-06 47.2 3.3 23 179-201 2-24 (119)
480 KOG0079 GTP-binding protein H- 92.1 0.044 9.6E-07 49.7 0.0 84 180-269 12-95 (198)
481 TIGR03497 FliI_clade2 flagella 92.1 0.39 8.5E-06 54.2 7.5 88 175-266 136-238 (413)
482 PRK13234 nifH nitrogenase redu 92.0 0.21 4.6E-06 54.3 5.3 41 175-217 3-43 (295)
483 PF06068 TIP49: TIP49 C-termin 92.0 0.24 5.3E-06 53.6 5.4 53 154-206 23-80 (398)
484 TIGR00764 lon_rel lon-related 92.0 0.39 8.4E-06 57.6 7.8 76 154-233 17-92 (608)
485 PF00625 Guanylate_kin: Guanyl 92.0 0.21 4.5E-06 50.1 4.8 39 176-216 2-40 (183)
486 PF05970 PIF1: PIF1-like helic 92.0 0.38 8.2E-06 54.1 7.4 41 162-202 8-48 (364)
487 PF13504 LRR_7: Leucine rich r 91.9 0.1 2.2E-06 29.0 1.4 16 555-570 2-17 (17)
488 TIGR01650 PD_CobS cobaltochela 91.9 0.44 9.6E-06 51.5 7.4 63 156-225 46-108 (327)
489 TIGR00382 clpX endopeptidase C 91.9 0.56 1.2E-05 52.9 8.5 46 156-201 78-141 (413)
490 PRK07196 fliI flagellum-specif 91.9 0.52 1.1E-05 53.3 8.2 89 175-267 154-257 (434)
491 PRK06793 fliI flagellum-specif 91.9 0.63 1.4E-05 52.6 8.8 90 175-267 155-258 (432)
492 TIGR00176 mobB molybdopterin-g 91.9 0.25 5.4E-06 47.7 4.9 34 178-212 1-34 (155)
493 COG4240 Predicted kinase [Gene 91.8 1 2.2E-05 44.8 9.0 82 173-255 47-133 (300)
494 PF13086 AAA_11: AAA domain; P 91.8 0.39 8.5E-06 50.4 7.0 23 178-200 19-41 (236)
495 PRK12339 2-phosphoglycerate ki 91.8 0.17 3.6E-06 51.1 3.8 25 176-200 3-27 (197)
496 PRK14530 adenylate kinase; Pro 91.8 0.15 3.2E-06 52.7 3.6 25 177-201 4-28 (215)
497 KOG0473 Leucine-rich repeat pr 91.8 0.014 3.1E-07 57.6 -3.6 84 550-633 38-122 (326)
498 COG1763 MobB Molybdopterin-gua 91.8 0.17 3.7E-06 48.6 3.6 29 176-204 2-30 (161)
499 PRK15429 formate hydrogenlyase 91.8 0.39 8.4E-06 59.3 7.7 61 155-217 376-438 (686)
500 PRK05201 hslU ATP-dependent pr 91.8 0.44 9.4E-06 53.1 7.2 76 156-231 16-107 (443)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-86 Score=791.18 Aligned_cols=740 Identities=26% Similarity=0.408 Sum_probs=535.1
Q ss_pred HHhhhhhhhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 044755 13 VKCLAPPTERRVGYLRDYNANFENLRAEIEKLKEESTSIQRRVSEAERNGENIEEKVERWVVSVKKIIDEAAKFIQDEET 92 (1079)
Q Consensus 13 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~~~~~~~~~ed~~d~~~~ 92 (1079)
++++.+.+.++... +.+.++.+..|++++..++.+++++++++ .....+..|.+.+++++|++||.++.+..
T Consensus 9 ~~~~~~~l~~~~~~-------~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~-~~~~~~~~~~e~~~~~~~~~e~~~~~~~v 80 (889)
T KOG4658|consen 9 VEKLDQLLNRESEC-------LDGKDNYILELKENLKALQSALEDLDAKR-DDLERRVNWEEDVGDLVYLAEDIIWLFLV 80 (889)
T ss_pred hhhHHHHHHHHHHH-------HhchHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554444444 56778899999999999999999999885 45788999999999999999999876543
Q ss_pred hhcc----------------cccCCC-CcChhhhhhhhHHHHHHHHHHHHHHHHhcCCCceecccCCC-ccccccccCCc
Q 044755 93 ATNK----------------RCLKGL-CPNFKTRYQLSKKAETEVKAAIVELREEAGRFDRISYRTIP-EEIWLKSRKGY 154 (1079)
Q Consensus 93 ~~~~----------------~~~~~~-~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 154 (1079)
.... -|+... ......-+.+++++.++.+. ++.+ ..++.|+.+.....+ ......+....
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~-ve~l-~~~~~~~~~~~~~~~~~~~e~~~~~~~ 158 (889)
T KOG4658|consen 81 EEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLRE-VESL-GSKGVFEVVGESLDPREKVETRPIQSE 158 (889)
T ss_pred HHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHH-HHHh-ccccceecccccccchhhcccCCCCcc
Confidence 2110 011111 12233334455555555555 5555 233334433321111 12222222333
Q ss_pred cccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh-hcCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 044755 155 EAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAR-EDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1079)
.. +|.+..++++.+.|.+++..+++|+||||+||||||++++|+.. ++.+||.++||.||+.++...++++|+..++.
T Consensus 159 ~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~ 237 (889)
T KOG4658|consen 159 SD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGL 237 (889)
T ss_pred cc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhcc
Confidence 33 89999999999999988779999999999999999999999988 89999999999999999999999999999887
Q ss_pred Cccc---cchHHHHHHHHHHHHcCCcEEEEEeCCCCccccccccCCCCCCCCCcEEEEEecChhhhhh-cCCCceEeCCC
Q 044755 234 VLEE---ETGSRRASRLYERLKKEEKILIILDNIWKCVDLEAVGIPFGDDHKGCKLLLTARDRNVLFR-MGSQKNFSIDI 309 (1079)
Q Consensus 234 ~~~~---~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~-~~~~~~~~l~~ 309 (1079)
.... ....+.+..+.+.|. ++||+||+||||+..+|+.++.|+|...+||||++|||+++||.. |++...+++++
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~ 316 (889)
T KOG4658|consen 238 LDEEWEDKEEDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVEC 316 (889)
T ss_pred CCcccchhhHHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccc
Confidence 4332 223455666777776 799999999999999999999999999999999999999999998 88889999999
Q ss_pred CCHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHHcCCCchHHHHHHHHHhcC-ChhHHHHHHHHhcCCCcCCCCCCchh
Q 044755 310 LNEEEAWRLFKLMADDH--VENRELQSTATEVAQACKGLPIALTTIARALRNK-SVPEWKSALQELRMPSEVNFEGVPAE 386 (1079)
Q Consensus 310 L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~ 386 (1079)
|+++|||+||++.++.. ...+.++++|++++++|+|+|||++++|+.|+.| +..+|+++.+.+.+....+++++.+.
T Consensus 317 L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~ 396 (889)
T KOG4658|consen 317 LTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEES 396 (889)
T ss_pred cCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhh
Confidence 99999999999999543 3445589999999999999999999999999999 78899999999887766666777888
Q ss_pred hhhhHHHhhccCChHHHHHHHHHhcccC--CCcchhHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHhhccccccC--
Q 044755 387 AYSTIELSFKNLKGEQLKKFFMLCSLLG--NSICTSYLFQCCMGLGILQKANKLEDARNKLYALVHELRDSCLLLEGD-- 462 (1079)
Q Consensus 387 ~~~~l~~sy~~L~~~~lk~cf~~~s~fp--~~~~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~-- 462 (1079)
+++++++||++||. ++|.||+|||+|| +.|+++.|+.+||||||+.+....+.+++.+++|+.+|+++++++..+
T Consensus 397 i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~ 475 (889)
T KOG4658|consen 397 ILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE 475 (889)
T ss_pred hHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc
Confidence 99999999999995 4999999999999 556677999999999999986667788999999999999999998765
Q ss_pred -CCCcEeehHHHHHHHHHHhh-----ccCceEEeccCCcCCCCccccccceeEEEecCCCCCCCCCccCCCcccEEEecC
Q 044755 463 -SNQQLSMHDVIRDVAISIAC-----RDQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECLRLEFLHINP 536 (1079)
Q Consensus 463 -~~~~~~~Hdlv~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~ 536 (1079)
...+|+|||+|||+|.++|+ ++++++ ..+.+....++...+..+|++++.++.+..++....+++|++|.+.+
T Consensus 476 ~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv-~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~ 554 (889)
T KOG4658|consen 476 GRKETVKMHDVVREMALWIASDFGKQEENQIV-SDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQR 554 (889)
T ss_pred cceeEEEeeHHHHHHHHHHhccccccccceEE-ECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEee
Confidence 33679999999999999998 666333 33334455677777899999999999999999999999999999998
Q ss_pred CCC-cccccCCcchhccCCcceEEEecCc-cccccCccccccccccEEeccccccCC-cccccCCcccceeeccCC-cCc
Q 044755 537 KDS-FFEINNPCNFFTGMRKLRVVDFTRM-QLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGS-VIV 612 (1079)
Q Consensus 537 ~~~-~~~~~~~~~~~~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~-~l~ 612 (1079)
+.. ...+ +..||..++.||||||++| .+.++|++|+.|.|||||+++++.++. |.++++|+.|.+|++..+ .+.
T Consensus 555 n~~~l~~i--s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~ 632 (889)
T KOG4658|consen 555 NSDWLLEI--SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE 632 (889)
T ss_pred cchhhhhc--CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc
Confidence 763 4555 7888999999999999976 567899988888888888888876655 555555555555555554 223
Q ss_pred ccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEee
Q 044755 613 MLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVK 692 (1079)
Q Consensus 613 ~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 692 (1079)
.+|..+..|.+||+|.+.. .... .....+.++.++.+|+.+.+...
T Consensus 633 ~~~~i~~~L~~Lr~L~l~~-------------------------s~~~---------~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 633 SIPGILLELQSLRVLRLPR-------------------------SALS---------NDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred cccchhhhcccccEEEeec-------------------------cccc---------cchhhHHhhhcccchhhheeecc
Confidence 3333334455555554443 2111 11233444455555555554432
Q ss_pred CCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccccccccCCCceeeccCCCCcceecccCCcCCCCCC
Q 044755 693 NDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDA 772 (1079)
Q Consensus 693 ~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 772 (1079)
....+.......+|.++ ...+.+.++.. ... ......+++|+.|.+.+|...+..............
T Consensus 679 s~~~~e~l~~~~~L~~~----------~~~l~~~~~~~-~~~--~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~ 745 (889)
T KOG4658|consen 679 SVLLLEDLLGMTRLRSL----------LQSLSIEGCSK-RTL--ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLC 745 (889)
T ss_pred hhHhHhhhhhhHHHHHH----------hHhhhhccccc-cee--ecccccccCcceEEEEcCCCchhhcccccccchhhh
Confidence 22111111111111111 11111111110 011 112245678888888877654322211111111013
Q ss_pred CCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccc
Q 044755 773 FPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFL 819 (1079)
Q Consensus 773 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 819 (1079)
|+++..+.+.+|...+.... ....|+|+.|.+..|+.+..+.+
T Consensus 746 f~~l~~~~~~~~~~~r~l~~----~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 746 FPNLSKVSILNCHMLRDLTW----LLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred HHHHHHHHhhccccccccch----hhccCcccEEEEecccccccCCC
Confidence 66777777777765544321 24578888888888888877655
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.3e-63 Score=634.56 Aligned_cols=685 Identities=21% Similarity=0.282 Sum_probs=463.6
Q ss_pred CccccccHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEe---CCc----------
Q 044755 153 GYEAFESRLCALKSVQNALT--DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEV---SQT---------- 217 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---~~~---------- 217 (1079)
...+++||+..++++..+|. .+++++|+|+||||+||||||+++|+... .+|++.+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhccccccc
Confidence 34568999999999998886 45789999999999999999999999875 56998888752 111
Q ss_pred -cC-HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccccccccCCCCCCCCCcEEEEEecChhh
Q 044755 218 -LD-IKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVDLEAVGIPFGDDHKGCKLLLTARDRNV 295 (1079)
Q Consensus 218 -~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 295 (1079)
.+ ...++++++.++....... ......+.+++. ++|+||||||||+..+|+.+.....+.++||+||||||+..+
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~--~~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~v 336 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIK--IYHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHF 336 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcc--cCCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHH
Confidence 01 1223344444332111100 011234555665 799999999999999999887766666789999999999999
Q ss_pred hhhcCCCceEeCCCCCHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHhcCChhHHHHHHHHhcC
Q 044755 296 LFRMGSQKNFSIDILNEEEAWRLFKLMAD-DHVENRELQSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRM 374 (1079)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~-~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~l~~ 374 (1079)
+..++..++|+++.+++++||+||.++|. ...+++++.+++++|+++|+|+|||++++|+.|++++..+|+.+++++..
T Consensus 337 l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~ 416 (1153)
T PLN03210 337 LRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRN 416 (1153)
T ss_pred HHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 98888888999999999999999999994 33445678899999999999999999999999999999999999999864
Q ss_pred CCcCCCCCCchhhhhhHHHhhccCChHHHHHHHHHhcccCCCcchhHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHh
Q 044755 375 PSEVNFEGVPAEAYSTIELSFKNLKGEQLKKFFMLCSLLGNSICTSYLFQCCMGLGILQKANKLEDARNKLYALVHELRD 454 (1079)
Q Consensus 375 ~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cf~~~s~fp~~~~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~~L~~ 454 (1079)
.. +.++.++|++||++|+++..|.||+++|+|+.+..++ .+..|++.+..... ..++.|++
T Consensus 417 ~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~-~v~~~l~~~~~~~~-----------~~l~~L~~ 477 (1153)
T PLN03210 417 GL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN-DIKLLLANSDLDVN-----------IGLKNLVD 477 (1153)
T ss_pred Cc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH-HHHHHHHhcCCCch-----------hChHHHHh
Confidence 21 4469999999999998754799999999999776555 46677777654321 12788999
Q ss_pred hccccccCCCCcEeehHHHHHHHHHHhhccCceEEeccCCcCCC---------CccccccceeEEEecCCCCCCCCC---
Q 044755 455 SCLLLEGDSNQQLSMHDVIRDVAISIACRDQHAVLVRNEDVWEW---------PDDIALKECYAISLRGCSIHELPE--- 522 (1079)
Q Consensus 455 ~~l~~~~~~~~~~~~Hdlv~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~l~~~~~~~l~~--- 522 (1079)
+||++.. .++++|||++|+||++++.++.. ..+....-| ........++.+++....+..+..
T Consensus 478 ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~ 552 (1153)
T PLN03210 478 KSLIHVR--EDIVEMHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHEN 552 (1153)
T ss_pred cCCEEEc--CCeEEhhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHH
Confidence 9999764 35799999999999999876531 001110111 111223566777766554433211
Q ss_pred -ccCCCcccEEEecCCCC------cccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccccCC-ccc
Q 044755 523 -GLECLRLEFLHINPKDS------FFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAI 594 (1079)
Q Consensus 523 -~~~~~~Lr~L~l~~~~~------~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~ 594 (1079)
+.++.+|+.|.+..+.. ...+ |.++..-...||.|++.++.++.+|..+ ...+|+.|++.+|.+.. +..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~l--p~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHL--PEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeec--CcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc
Confidence 23566677666644311 1112 3333222245677777777666676665 35667777777766665 556
Q ss_pred ccCCcccceeeccCC-cCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhc
Q 044755 595 IGKLKNLEILSFWGS-VIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINA 673 (1079)
Q Consensus 595 i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 673 (1079)
+..+.+|++|+++++ .+..+|. ++.+++|++|++++|..+..+|.. ++++++|+.|++++|... ..
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L-----------~~ 696 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENL-----------EI 696 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCc-----------Cc
Confidence 666677777777665 4555553 566667777777666666666554 666666666666655321 00
Q ss_pred chhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccccccccCCCceeeccC
Q 044755 674 RLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQN 753 (1079)
Q Consensus 674 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~ 753 (1079)
.+... ++++|+.|++ ++|....... ...++|+.|++.+
T Consensus 697 Lp~~i-~l~sL~~L~L------------------------------------sgc~~L~~~p-----~~~~nL~~L~L~~ 734 (1153)
T PLN03210 697 LPTGI-NLKSLYRLNL------------------------------------SGCSRLKSFP-----DISTNISWLDLDE 734 (1153)
T ss_pred cCCcC-CCCCCCEEeC------------------------------------CCCCCccccc-----cccCCcCeeecCC
Confidence 11111 3344444444 4433222111 1124555555554
Q ss_pred CCCcceecccCCcCCCCCCCCccceeecccccccccccc----CcCCcCCCCCcceEEeecCCCCCcccchHHhccCCcc
Q 044755 754 NPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQ----DRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRL 829 (1079)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~----~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L 829 (1079)
+. +..+ +....+++|+.|.+.++....-+.. .......+++|+.|++++|+.+..+|. .+.++++|
T Consensus 735 n~-i~~l-------P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~--si~~L~~L 804 (1153)
T PLN03210 735 TA-IEEF-------PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS--SIQNLHKL 804 (1153)
T ss_pred Cc-cccc-------cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh--hhhCCCCC
Confidence 42 1111 1112355566665554322111100 000112357899999999988888864 46788999
Q ss_pred ceEeeccccccccccccccccccccccccccccccEEecCCCCCccccccCccccccccccccccccccccccccccccc
Q 044755 830 ERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGMHETCSNKISSFEDKLDISS 909 (1079)
Q Consensus 830 ~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1079)
+.|.+++|..++.+|. ...+++|+.|++++|.++..++..
T Consensus 805 ~~L~Ls~C~~L~~LP~-----------~~~L~sL~~L~Ls~c~~L~~~p~~----------------------------- 844 (1153)
T PLN03210 805 EHLEIENCINLETLPT-----------GINLESLESLDLSGCSRLRTFPDI----------------------------- 844 (1153)
T ss_pred CEEECCCCCCcCeeCC-----------CCCccccCEEECCCCCcccccccc-----------------------------
Confidence 9999999998888763 125789999999999988776532
Q ss_pred ccccccccccccceeeecccceeeecCCCCccccccccccceEEEEccCcccccccccchhhhccccceEEEecccccce
Q 044755 910 ALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCKGLQE 989 (1079)
Q Consensus 910 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 989 (1079)
.++|+.|++++|.++.++ ..+..+++|+.|++++|++++.++ .....+++|+.|++++|+++..
T Consensus 845 --------~~nL~~L~Ls~n~i~~iP------~si~~l~~L~~L~L~~C~~L~~l~--~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 845 --------STNISDLNLSRTGIEEVP------WWIEKFSNLSFLDMNGCNNLQRVS--LNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred --------ccccCEeECCCCCCccCh------HHHhcCCCCCEEECCCCCCcCccC--cccccccCCCeeecCCCccccc
Confidence 468899999999887652 245678999999999999999873 3456789999999999998876
Q ss_pred e
Q 044755 990 I 990 (1079)
Q Consensus 990 i 990 (1079)
+
T Consensus 909 ~ 909 (1153)
T PLN03210 909 A 909 (1153)
T ss_pred c
Confidence 6
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2e-41 Score=370.79 Aligned_cols=273 Identities=33% Similarity=0.531 Sum_probs=218.3
Q ss_pred HHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCcc-
Q 044755 160 RLCALKSVQNALTD--VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLE- 236 (1079)
Q Consensus 160 r~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~- 236 (1079)
|+.++++|.++|.+ ++.++|+|+||||+||||||++++++...+.+|+.++|++++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999997 789999999999999999999999997778999999999999999999999999999987743
Q ss_pred ---ccchHHHHHHHHHHHHcCCcEEEEEeCCCCccccccccCCCCCCCCCcEEEEEecChhhhhhcCC-CceEeCCCCCH
Q 044755 237 ---EETGSRRASRLYERLKKEEKILIILDNIWKCVDLEAVGIPFGDDHKGCKLLLTARDRNVLFRMGS-QKNFSIDILNE 312 (1079)
Q Consensus 237 ---~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~-~~~~~l~~L~~ 312 (1079)
.....+....+.+.+. ++++||||||||+...|+.+...++....|++||||||+..++..+.. ...+++++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2334445666666665 679999999999999999998888877789999999999998877554 67899999999
Q ss_pred HHHHHHHHHHhcCCC--CChhhHHHHHHHHHHcCCCchHHHHHHHHHhcC-ChhHHHHHHHHhcCCCcCCCCCCchhhhh
Q 044755 313 EEAWRLFKLMADDHV--ENRELQSTATEVAQACKGLPIALTTIARALRNK-SVPEWKSALQELRMPSEVNFEGVPAEAYS 389 (1079)
Q Consensus 313 ~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 389 (1079)
++|++||.+.++... ..+...+.+++|+++|+|+||||+++|++|+.+ +..+|+.+++.+...... ..+....+..
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 999999999995433 345567789999999999999999999999766 788999999886544322 1123677999
Q ss_pred hHHHhhccCChHHHHHHHHHhcccCC--CcchhHHHHHHHhhcccccc
Q 044755 390 TIELSFKNLKGEQLKKFFMLCSLLGN--SICTSYLFQCCMGLGILQKA 435 (1079)
Q Consensus 390 ~l~~sy~~L~~~~lk~cf~~~s~fp~--~~~~~~li~~w~aeg~i~~~ 435 (1079)
++.+||+.||++ +|+||+|||+||. .|+++.|+++|++||||...
T Consensus 239 ~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 999999999996 8999999999994 57788999999999999753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=5.5e-29 Score=319.48 Aligned_cols=480 Identities=18% Similarity=0.144 Sum_probs=295.1
Q ss_pred ccceeEEEecCCCCC-CCCCcc--CCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccc-ccCccccccccc
Q 044755 504 LKECYAISLRGCSIH-ELPEGL--ECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLL-LLPSSIDLLVNL 579 (1079)
Q Consensus 504 ~~~~~~l~l~~~~~~-~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L 579 (1079)
...++.+.+.+|.+. .+|... .+++|+.|++.++.....+ |. ..+++|++|++++|.+. .+|..++.+++|
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~--p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI--PR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccccc--Cc---cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 456777788777764 455433 6778888888776654444 43 34677778888887776 467777778888
Q ss_pred cEEeccccccCC--cccccCCcccceeeccCCcCc-ccChhhccCCcccEEcccccccccccChhhhhcccccceeeccc
Q 044755 580 QTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIV-MLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 656 (1079)
Q Consensus 580 ~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 656 (1079)
++|+|++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|. .++++++|++|++++
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EIGGLTSLNHLDLVY 245 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-hHhcCCCCCEEECcC
Confidence 888888777654 677777888888888777654 4677777788888888877633333443 477778888888777
Q ss_pred ccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCC-CCCchhh-hcccceeeeee----------ecCCcccceEe
Q 044755 657 CFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDN-VLPEGFF-ARKLERFKISK----------LQGIKDVEYLC 724 (1079)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~-~~~L~~L~l~~----------~~~l~~L~~L~ 724 (1079)
|.+. +..+..++++++|+.|+++.+... .+|..+. +.+|+.|.++. +..+++|+.|+
T Consensus 246 n~l~-----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 246 NNLT-----------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314 (968)
T ss_pred ceec-----------cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence 6543 234456667777777777766543 3343332 35666665543 23467788888
Q ss_pred eccccccccccccccccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcc
Q 044755 725 LDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELK 804 (1079)
Q Consensus 725 L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~ 804 (1079)
+.++.........+ ..+++|+.|++.++.....+ ......+++|+.|+++++.-...++ .....+++|+
T Consensus 315 l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~------p~~l~~~~~L~~L~Ls~n~l~~~~p---~~~~~~~~L~ 383 (968)
T PLN00113 315 LFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSGEI------PKNLGKHNNLTVLDLSTNNLTGEIP---EGLCSSGNLF 383 (968)
T ss_pred CCCCccCCcCChhH--hcCCCCCEEECcCCCCcCcC------ChHHhCCCCCcEEECCCCeeEeeCC---hhHhCcCCCC
Confidence 87765443332222 45688888888877432111 1112456778888887753222221 1123456777
Q ss_pred eEEeecCCCCCcccchHHhccCCccceEeeccccccccccccccccccccccccccccccEEecCCCCCccccccCcccc
Q 044755 805 TIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEVKKN 884 (1079)
Q Consensus 805 ~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~ 884 (1079)
.|++.+|+-...+|. .+..+++|+.|.+.+|.-...++ .....+++|+.|+++++.-...++....
T Consensus 384 ~L~l~~n~l~~~~p~--~~~~~~~L~~L~L~~n~l~~~~p----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-- 449 (968)
T PLN00113 384 KLILFSNSLEGEIPK--SLGACRSLRRVRLQDNSFSGELP----------SEFTKLPLVYFLDISNNNLQGRINSRKW-- 449 (968)
T ss_pred EEECcCCEecccCCH--HHhCCCCCCEEECcCCEeeeECC----------hhHhcCCCCCEEECcCCcccCccChhhc--
Confidence 777777543333332 34556777777777765332222 1233456666666655432111111000
Q ss_pred cccccccccccccccccccccccccccccccccccccceeeecccceeeecCCCCccccccccccceEEEEccCcccccc
Q 044755 885 REAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYI 964 (1079)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l 964 (1079)
.+.......+.. +.-..........++|+.|++++|.+.... +..+..+++|+.|+|++| ++...
T Consensus 450 ----~l~~L~~L~L~~-----n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~N-~l~~~ 514 (968)
T PLN00113 450 ----DMPSLQMLSLAR-----NKFFGGLPDSFGSKRLENLDLSRNQFSGAV-----PRKLGSLSELMQLKLSEN-KLSGE 514 (968)
T ss_pred ----cCCCCcEEECcC-----ceeeeecCcccccccceEEECcCCccCCcc-----ChhhhhhhccCEEECcCC-cceee
Confidence 000000000000 000000111123578999999999877542 234667899999999998 44443
Q ss_pred cccchhhhccccceEEEecccccceeecccccccccCCcccccccCeeecccCCCccccCCCccccCCCCccEEEEecCC
Q 044755 965 FSASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGMHTSEWPALKLLKVSDCD 1044 (1079)
Q Consensus 965 ~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~ 1044 (1079)
. +..+.++++|+.|++++|.-...+ +..+.+ +++|+.|++++|.-...+|..+. .+++|+.|++++|+
T Consensus 515 ~-p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~-------l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~l~ls~N~ 582 (968)
T PLN00113 515 I-PDELSSCKKLVSLDLSHNQLSGQI--PASFSE-------MPVLSQLDLSQNQLSGEIPKNLG--NVESLVQVNISHNH 582 (968)
T ss_pred C-ChHHcCccCCCEEECCCCcccccC--ChhHhC-------cccCCEEECCCCcccccCChhHh--cCcccCEEeccCCc
Confidence 2 456778899999999998643333 444444 89999999999887778888765 68899999999998
Q ss_pred Cceeeccc
Q 044755 1045 QVTVFDSE 1052 (1079)
Q Consensus 1045 ~L~~lp~~ 1052 (1079)
-...+|..
T Consensus 583 l~~~~p~~ 590 (968)
T PLN00113 583 LHGSLPST 590 (968)
T ss_pred ceeeCCCc
Confidence 77778864
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.8e-28 Score=314.66 Aligned_cols=484 Identities=19% Similarity=0.177 Sum_probs=344.4
Q ss_pred cceeEEEecCCCCCCC-CC-ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccc-cCccccccccccE
Q 044755 505 KECYAISLRGCSIHEL-PE-GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLL-LPSSIDLLVNLQT 581 (1079)
Q Consensus 505 ~~~~~l~l~~~~~~~l-~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~ 581 (1079)
..++.+.+.++.+... +. ...+++|++|++.++.....+ |..++..+++||+|+|++|.+.. +|. +.+++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~i--p~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPI--PDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcC--ChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 4688899998877543 32 347999999999998776667 88888899999999999999874 554 57899999
Q ss_pred EeccccccCC--cccccCCcccceeeccCCcCc-ccChhhccCCcccEEcccccccccccChhhhhcccccceeeccccc
Q 044755 582 LCLVECMLDD--IAIIGKLKNLEILSFWGSVIV-MLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCF 658 (1079)
Q Consensus 582 L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 658 (1079)
|+|++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.-...+| ..++++++|++|++++|.
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccEEECcCCc
Confidence 9999999875 788999999999999999764 689999999999999999984444455 458999999999999887
Q ss_pred ccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCC-CCCchhh-hcccceeeeee----------ecCCcccceEeec
Q 044755 659 VEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDN-VLPEGFF-ARKLERFKISK----------LQGIKDVEYLCLD 726 (1079)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~-~~~L~~L~l~~----------~~~l~~L~~L~L~ 726 (1079)
+. +..+..++.+++|+.|+++.+... .+|..+. +.+|+.|.+.. +..+++|+.|+++
T Consensus 224 l~-----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 224 LS-----------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred cC-----------CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence 64 245667889999999999988764 4454432 47788877654 2346789999998
Q ss_pred cccccccccccccccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceE
Q 044755 727 KSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTI 806 (1079)
Q Consensus 727 ~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L 806 (1079)
++.........+ ..+++|+.|++.++...... ......+++|+.|++.++.-...+ +...+.+++|+.|
T Consensus 293 ~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~------~~~~~~l~~L~~L~L~~n~l~~~~---p~~l~~~~~L~~L 361 (968)
T PLN00113 293 DNSLSGEIPELV--IQLQNLEILHLFSNNFTGKI------PVALTSLPRLQVLQLWSNKFSGEI---PKNLGKHNNLTVL 361 (968)
T ss_pred CCeeccCCChhH--cCCCCCcEEECCCCccCCcC------ChhHhcCCCCCEEECcCCCCcCcC---ChHHhCCCCCcEE
Confidence 876443332222 46789999999887532211 112257899999999887533233 2224578999999
Q ss_pred EeecCCCCCcccchHHhccCCccceEeeccccccccccccccccccccccccccccccEEecCCCCCccccccCcccccc
Q 044755 807 RVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEVKKNRE 886 (1079)
Q Consensus 807 ~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~ 886 (1079)
++++|.-...+|. .+..+++|+.|.+.++.-...++ .....+++|+.|++.+|.--..++..
T Consensus 362 ~Ls~n~l~~~~p~--~~~~~~~L~~L~l~~n~l~~~~p----------~~~~~~~~L~~L~L~~n~l~~~~p~~------ 423 (968)
T PLN00113 362 DLSTNNLTGEIPE--GLCSSGNLFKLILFSNSLEGEIP----------KSLGACRSLRRVRLQDNSFSGELPSE------ 423 (968)
T ss_pred ECCCCeeEeeCCh--hHhCcCCCCEEECcCCEecccCC----------HHHhCCCCCCEEECcCCEeeeECChh------
Confidence 9998654333432 44567899999998876443333 23446889999999887533222211
Q ss_pred cccccccccccccccccccccccccccccccccccceeeecccceeeecCCCCccccccccccceEEEEccCcccccccc
Q 044755 887 AQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFS 966 (1079)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~ 966 (1079)
...+.......+.. .............+++|+.|++++|++.... |. ....++|+.|++++|. +....
T Consensus 424 ~~~l~~L~~L~Ls~----N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~----p~--~~~~~~L~~L~ls~n~-l~~~~- 491 (968)
T PLN00113 424 FTKLPLVYFLDISN----NNLQGRINSRKWDMPSLQMLSLARNKFFGGL----PD--SFGSKRLENLDLSRNQ-FSGAV- 491 (968)
T ss_pred HhcCCCCCEEECcC----CcccCccChhhccCCCCcEEECcCceeeeec----Cc--ccccccceEEECcCCc-cCCcc-
Confidence 01111111111110 0011111223345789999999999776532 21 1245889999999994 44432
Q ss_pred cchhhhccccceEEEecccccceeecccccccccCCcccccccCeeecccCCCccccCCCccccCCCCccEEEEecCCCc
Q 044755 967 ASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGMHTSEWPALKLLKVSDCDQV 1046 (1079)
Q Consensus 967 ~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~L 1046 (1079)
+..+..+++|+.|++++|.-...+ |+.+.+ +++|+.|++++|.-...+|..+. .+++|+.|++++|.-.
T Consensus 492 ~~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~-------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 492 PRKLGSLSELMQLKLSENKLSGEI--PDELSS-------CKKLVSLDLSHNQLSGQIPASFS--EMPVLSQLDLSQNQLS 560 (968)
T ss_pred ChhhhhhhccCEEECcCCcceeeC--ChHHcC-------ccCCCEEECCCCcccccCChhHh--CcccCCEEECCCCccc
Confidence 456778999999999999544444 444444 89999999999887777777655 6899999999998876
Q ss_pred eeeccccccc
Q 044755 1047 TVFDSELFSF 1056 (1079)
Q Consensus 1047 ~~lp~~l~~~ 1056 (1079)
..+|..+..+
T Consensus 561 ~~~p~~l~~l 570 (968)
T PLN00113 561 GEIPKNLGNV 570 (968)
T ss_pred ccCChhHhcC
Confidence 6788766554
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=2.1e-22 Score=215.83 Aligned_cols=391 Identities=17% Similarity=0.259 Sum_probs=227.8
Q ss_pred ccceeEEEecCCCCCCCCC----ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccc
Q 044755 504 LKECYAISLRGCSIHELPE----GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNL 579 (1079)
Q Consensus 504 ~~~~~~l~l~~~~~~~l~~----~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L 579 (1079)
....+-+......+..+.. ..-.+..++|++++|.. ..+ ...+|.++.+|+.+.+.+|.++.+|.-.....||
T Consensus 51 ~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl-~~i--d~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl 127 (873)
T KOG4194|consen 51 PCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKL-SHI--DFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHL 127 (873)
T ss_pred CCCceeeecCccccccccccccCCcCccceeeeecccccc-ccC--cHHHHhcCCcceeeeeccchhhhcccccccccce
Confidence 3444555555544443311 11234566777776543 233 4456677888888888888888887777777778
Q ss_pred cEEeccccccCC--cccccCCcccceeeccCCcCcccChh-hccCCcccEEcccccccccccChhhhhcccccceeeccc
Q 044755 580 QTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 656 (1079)
Q Consensus 580 ~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 656 (1079)
+.|+|.+|.|+. -+.+..+..|++|||+.|.+.++|.. +..-.++++|+|++| .++.+..+.|..+.+|-+|.++.
T Consensus 128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeeccc
Confidence 888888887766 36677777788888888777777653 555567778888776 67777666677777777777777
Q ss_pred ccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccc
Q 044755 657 CFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLF 736 (1079)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~ 736 (1079)
|++. .-....++.|++|+.|++..|.+.... +
T Consensus 207 Nrit-----------tLp~r~Fk~L~~L~~LdLnrN~irive-~------------------------------------ 238 (873)
T KOG4194|consen 207 NRIT-----------TLPQRSFKRLPKLESLDLNRNRIRIVE-G------------------------------------ 238 (873)
T ss_pred Cccc-----------ccCHHHhhhcchhhhhhccccceeeeh-h------------------------------------
Confidence 7654 123445666777777776655443221 1
Q ss_pred cccccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCc
Q 044755 737 DLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSN 816 (1079)
Q Consensus 737 ~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~ 816 (1079)
+..+++++|+.|.+..+. +..+.++.+ -++.+++.|+|... ++..+..+. .-.+..|+.|++++ +.+..
T Consensus 239 -ltFqgL~Sl~nlklqrN~-I~kL~DG~F-----y~l~kme~l~L~~N-~l~~vn~g~--lfgLt~L~~L~lS~-NaI~r 307 (873)
T KOG4194|consen 239 -LTFQGLPSLQNLKLQRND-ISKLDDGAF-----YGLEKMEHLNLETN-RLQAVNEGW--LFGLTSLEQLDLSY-NAIQR 307 (873)
T ss_pred -hhhcCchhhhhhhhhhcC-cccccCcce-----eeecccceeecccc-hhhhhhccc--ccccchhhhhccch-hhhhe
Confidence 111334444444444331 111111111 23344555555442 222221111 11345555555555 34444
Q ss_pred ccchHHhccCCccceEeeccccccccccccccccccccccccccccccEEecCCCCCccccccCcccccccccccccccc
Q 044755 817 IFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGMHETCSN 896 (1079)
Q Consensus 817 l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~ 896 (1079)
+-. ....+.++|++|++++. .++.++. .++..+.+|+.|.|+... +.++..+
T Consensus 308 ih~-d~WsftqkL~~LdLs~N-~i~~l~~---------~sf~~L~~Le~LnLs~Ns-i~~l~e~---------------- 359 (873)
T KOG4194|consen 308 IHI-DSWSFTQKLKELDLSSN-RITRLDE---------GSFRVLSQLEELNLSHNS-IDHLAEG---------------- 359 (873)
T ss_pred eec-chhhhcccceeEecccc-ccccCCh---------hHHHHHHHhhhhcccccc-hHHHHhh----------------
Confidence 432 23345566666666543 2333321 123345666666665532 3322211
Q ss_pred cccccccccccccccccccccccccceeeecccceeeecCCCCccccccccccceEEEEccCcccccccccchhhhcccc
Q 044755 897 KISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHL 976 (1079)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 976 (1079)
.+..+++|++|++++|.+...-.. ....|.++++|+.|.+.++ +++++ +...+.++++|
T Consensus 360 -----------------af~~lssL~~LdLr~N~ls~~IED--aa~~f~gl~~LrkL~l~gN-qlk~I-~krAfsgl~~L 418 (873)
T KOG4194|consen 360 -----------------AFVGLSSLHKLDLRSNELSWCIED--AAVAFNGLPSLRKLRLTGN-QLKSI-PKRAFSGLEAL 418 (873)
T ss_pred -----------------HHHHhhhhhhhcCcCCeEEEEEec--chhhhccchhhhheeecCc-eeeec-chhhhccCccc
Confidence 234478899999999987754222 2346778999999999998 88888 55778889999
Q ss_pred ceEEEecccccceeecccccccccCCcccccccCeeeccc
Q 044755 977 QHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSG 1016 (1079)
Q Consensus 977 ~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~ 1016 (1079)
++|++.++. +.+| .++.|++ + .|++|.+..
T Consensus 419 E~LdL~~Na-iaSI-q~nAFe~-------m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 419 EHLDLGDNA-IASI-QPNAFEP-------M-ELKELVMNS 448 (873)
T ss_pred ceecCCCCc-ceee-ccccccc-------c-hhhhhhhcc
Confidence 999998875 4444 3455554 4 666666543
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=3.4e-23 Score=212.43 Aligned_cols=111 Identities=18% Similarity=0.276 Sum_probs=78.9
Q ss_pred ccccccccceeeecccceeeecCCCCccccccccccceEEEEccCcccccccccchhhhccccceEEEecccccceeecc
Q 044755 914 EKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCKGLQEIISK 993 (1079)
Q Consensus 914 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~ 993 (1079)
.+..+++|..|++++|-+.++ |. .+..+..|+.|+|+.+ .+..+ |.....+..|+.+-++++ ++..+ .+
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln~L-----P~-e~~~lv~Lq~LnlS~N-rFr~l--P~~~y~lq~lEtllas~n-qi~~v-d~ 498 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLNDL-----PE-EMGSLVRLQTLNLSFN-RFRML--PECLYELQTLETLLASNN-QIGSV-DP 498 (565)
T ss_pred HHHhhhcceeeecccchhhhc-----ch-hhhhhhhhheeccccc-ccccc--hHHHhhHHHHHHHHhccc-ccccc-Ch
Confidence 344588899999999877765 22 3456777999999988 55555 344444555555555544 56655 22
Q ss_pred cccccccCCcccccccCeeecccCCCccccCCCccccCCCCccEEEEecCCC
Q 044755 994 EGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGMHTSEWPALKLLKVSDCDQ 1045 (1079)
Q Consensus 994 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~ 1045 (1079)
.+..+ +.+|..|++.+ +.+..+|..+. ++++|++|+++|-|.
T Consensus 499 ~~l~n-------m~nL~tLDL~n-Ndlq~IPp~Lg--nmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 499 SGLKN-------MRNLTTLDLQN-NDLQQIPPILG--NMTNLRHLELDGNPF 540 (565)
T ss_pred HHhhh-------hhhcceeccCC-CchhhCChhhc--cccceeEEEecCCcc
Confidence 23433 88999999988 67999999876 899999999999763
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=3.5e-22 Score=215.04 Aligned_cols=172 Identities=20% Similarity=0.281 Sum_probs=130.5
Q ss_pred ccceeEEEecCCCCC--CCCCcc-CCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCcccccccccc
Q 044755 504 LKECYAISLRGCSIH--ELPEGL-ECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQ 580 (1079)
Q Consensus 504 ~~~~~~l~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 580 (1079)
.+-+|.+.+++|++. .+|... .++.++-|.+..... ..+ |.. ++.+.+|..|.+++|++.++-..++.|+.||
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-~~v--PeE-L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-EQV--PEE-LSRLQKLEHLSMAHNQLISVHGELSDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh-hhC--hHH-HHHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence 456778888888774 466655 578888888765432 233 443 4788888888888888888877788888888
Q ss_pred EEeccccccCC---cccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccc
Q 044755 581 TLCLVECMLDD---IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 657 (1079)
Q Consensus 581 ~L~L~~~~l~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 657 (1079)
.+.++.|+++. |..|.+|..|.+|||++|.+.+.|..+..-+++-.|+|++| +++.+|...+-+|+.|-.|++++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccc
Confidence 88888888765 78888888888888888888888888888888888888887 788888887888888888888877
Q ss_pred cccccCCCCCchhhhcchhhhccCCCCcEEEEEee
Q 044755 658 FVEWDDEGPNSERINARLDELMHLPRLTTLEVHVK 692 (1079)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 692 (1079)
.+. ..+...+.|.+|++|.+++|
T Consensus 161 rLe------------~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 161 RLE------------MLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred hhh------------hcCHHHHHHhhhhhhhcCCC
Confidence 553 34455555666666666654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=9.2e-21 Score=203.35 Aligned_cols=398 Identities=20% Similarity=0.245 Sum_probs=240.3
Q ss_pred ceEEEecCcccccc-CccccccccccEEeccccccCC-cccccCCcccceeeccCCcCcccC-hhhccCCcccEEccccc
Q 044755 556 LRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSVIVMLP-EELGHLTKLRQLDLSNC 632 (1079)
Q Consensus 556 Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~ 632 (1079)
-+.||+++|.+... +..|.+++||+.+++.+|.++. |...+...+|+.|+|.+|.|.++. +++..++.|+.|||+.|
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 35577887777765 4456777778888887777777 554555566777777777776663 34667777777777776
Q ss_pred ccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeee
Q 044755 633 FKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKIS 712 (1079)
Q Consensus 633 ~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 712 (1079)
.+..++...+.+=.++++|++++|.+. .-....+..+.+|..|.++.|.++.+|.-.|
T Consensus 160 -~is~i~~~sfp~~~ni~~L~La~N~It-----------~l~~~~F~~lnsL~tlkLsrNrittLp~r~F---------- 217 (873)
T KOG4194|consen 160 -LISEIPKPSFPAKVNIKKLNLASNRIT-----------TLETGHFDSLNSLLTLKLSRNRITTLPQRSF---------- 217 (873)
T ss_pred -hhhcccCCCCCCCCCceEEeecccccc-----------ccccccccccchheeeecccCcccccCHHHh----------
Confidence 677777666666677777777777664 1122334455567777777776666664422
Q ss_pred eecCCcccceEeeccccccccccccccccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeecccccccccccc
Q 044755 713 KLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQ 792 (1079)
Q Consensus 713 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 792 (1079)
..+|.|+.|.+..+. ++.+ ++.. ..++++|+.|.+... ++..+..
T Consensus 218 ----------------------------k~L~~L~~LdLnrN~-iriv----e~lt-FqgL~Sl~nlklqrN-~I~kL~D 262 (873)
T KOG4194|consen 218 ----------------------------KRLPKLESLDLNRNR-IRIV----EGLT-FQGLPSLQNLKLQRN-DISKLDD 262 (873)
T ss_pred ----------------------------hhcchhhhhhccccc-eeee----hhhh-hcCchhhhhhhhhhc-CcccccC
Confidence 234566666665542 1111 1111 167889999988653 3333322
Q ss_pred CcCCcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeeccccccccccccccccccccccccccccccEEecCCCC
Q 044755 793 DRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLP 872 (1079)
Q Consensus 793 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~ 872 (1079)
+. .-.+.++++|++.. +++..+.. +++-++++|+.|+++... +..+... +=...++|+.|+|++.
T Consensus 263 G~--Fy~l~kme~l~L~~-N~l~~vn~-g~lfgLt~L~~L~lS~Na-I~rih~d---------~WsftqkL~~LdLs~N- 327 (873)
T KOG4194|consen 263 GA--FYGLEKMEHLNLET-NRLQAVNE-GWLFGLTSLEQLDLSYNA-IQRIHID---------SWSFTQKLKELDLSSN- 327 (873)
T ss_pred cc--eeeecccceeeccc-chhhhhhc-ccccccchhhhhccchhh-hheeecc---------hhhhcccceeEecccc-
Confidence 22 22578889999987 66666654 455568888888887643 3333211 1113567777777653
Q ss_pred CccccccCcccccccccccccccccccccccccccccccccccccccccceeeecccceeeecCCCCccccccccccceE
Q 044755 873 ELTSFCCEVKKNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTR 952 (1079)
Q Consensus 873 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~ 952 (1079)
.++.++.+ .+..+..|++|+++.|.++.+ ....|.++++|+.
T Consensus 328 ~i~~l~~~---------------------------------sf~~L~~Le~LnLs~Nsi~~l-----~e~af~~lssL~~ 369 (873)
T KOG4194|consen 328 RITRLDEG---------------------------------SFRVLSQLEELNLSHNSIDHL-----AEGAFVGLSSLHK 369 (873)
T ss_pred ccccCChh---------------------------------HHHHHHHhhhhcccccchHHH-----HhhHHHHhhhhhh
Confidence 34444332 344577888888888877765 3446667788888
Q ss_pred EEEccCccccccc--ccchhhhccccceEEEecccccceeecccccccccCCcccccccCeeecccCCCcccc-CCCccc
Q 044755 953 LILSKCPKLKYIF--SASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCL-YPGMHT 1029 (1079)
Q Consensus 953 L~i~~c~~l~~l~--~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-~~~~~~ 1029 (1079)
|++.++ .+.-.. ....+.++++|+.|.+.++ ++..|.. ..+.+ ++.|++|++.+.+ +.++ |+.+.+
T Consensus 370 LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~k-rAfsg-------l~~LE~LdL~~Na-iaSIq~nAFe~ 438 (873)
T KOG4194|consen 370 LDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPK-RAFSG-------LEALEHLDLGDNA-IASIQPNAFEP 438 (873)
T ss_pred hcCcCC-eEEEEEecchhhhccchhhhheeecCc-eeeecch-hhhcc-------CcccceecCCCCc-ceeeccccccc
Confidence 888776 332211 1234667888888888876 5666621 22333 7788888887744 4444 443331
Q ss_pred cCCCCccEEEEecCC-----Cceeeccccccccccc----ccCCCCCCCCCCccccc
Q 044755 1030 SEWPALKLLKVSDCD-----QVTVFDSELFSFCKSS----EEDKPDIPARQPLFLLE 1077 (1079)
Q Consensus 1030 ~~l~sL~~L~i~~C~-----~L~~lp~~l~~~~~~~----~~~~~~~~~~~~~~~~~ 1077 (1079)
-.|++|.+..-. +|+=|++++.+..... ...+|+=-+-|+.++.+
T Consensus 439 ---m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i~svd 492 (873)
T KOG4194|consen 439 ---MELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSIVSVD 492 (873)
T ss_pred ---chhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccceeEeec
Confidence 256666554311 2555666665542221 56666666666666553
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=2.6e-19 Score=229.31 Aligned_cols=325 Identities=19% Similarity=0.279 Sum_probs=215.4
Q ss_pred ccceeEEEecCCCC-------CCCCCccC--CCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCcccc
Q 044755 504 LKECYAISLRGCSI-------HELPEGLE--CLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSID 574 (1079)
Q Consensus 504 ~~~~~~l~l~~~~~-------~~l~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~ 574 (1079)
..+++.+.+..+.. ..+|..+. ..+||.|.+.++. ...+ |..+ ...+|++|++.++.+..+|.++.
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~l--P~~f--~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCM--PSNF--RPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCC--CCcC--CccCCcEEECcCccccccccccc
Confidence 45566666644321 12344332 2469999988753 3344 5554 46899999999999999999999
Q ss_pred ccccccEEeccccc-cCCcccccCCcccceeeccCC-cCcccChhhccCCcccEEcccccccccccChhhhhccccccee
Q 044755 575 LLVNLQTLCLVECM-LDDIAIIGKLKNLEILSFWGS-VIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEEL 652 (1079)
Q Consensus 575 ~L~~L~~L~L~~~~-l~~~~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L 652 (1079)
.+++|++|+|++|. +..++.++.+++|++|++++| .+..+|..++++++|++|++++|..++.+|.. + ++++|+.|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L 709 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRL 709 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEE
Confidence 99999999999886 566667999999999999998 78899999999999999999999999999875 3 79999999
Q ss_pred ecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeec-----------------
Q 044755 653 YMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQ----------------- 715 (1079)
Q Consensus 653 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~----------------- 715 (1079)
++++|... ...+. ...+|+.|++..+.+..+|....+.+|..|.+....
T Consensus 710 ~Lsgc~~L-----------~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~ 775 (1153)
T PLN03210 710 NLSGCSRL-----------KSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTM 775 (1153)
T ss_pred eCCCCCCc-----------ccccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhh
Confidence 99988543 01111 245789999999888888877655666655554310
Q ss_pred CCcccceEeeccccccccccccccccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcC
Q 044755 716 GIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 795 (1079)
Q Consensus 716 ~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~ 795 (1079)
..++|+.|+++++.....+...+ +.+++|+.|++.+|..+..+.. ...+++|+.|++++|..+..++
T Consensus 776 ~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~-------~~~L~sL~~L~Ls~c~~L~~~p---- 842 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPT-------GINLESLESLDLSGCSRLRTFP---- 842 (1153)
T ss_pred ccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCC-------CCCccccCEEECCCCCcccccc----
Confidence 12456666666555444333222 4456666666666654443311 1245566666666665554431
Q ss_pred CcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeeccccccccccccccccccccccccccccccEEecCCCCCcc
Q 044755 796 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELT 875 (1079)
Q Consensus 796 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~ 875 (1079)
...++|+.|++++ +.+..+|. .+..+++|+.|.+.+|++++.++.. ...+++|+.+++.+|++|+
T Consensus 843 --~~~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~~----------~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 843 --DISTNISDLNLSR-TGIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSLN----------ISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred --ccccccCEeECCC-CCCccChH--HHhcCCCCCEEECCCCCCcCccCcc----------cccccCCCeeecCCCcccc
Confidence 1234566666665 34555543 3455666666666666666665431 2245666666666666665
Q ss_pred cc
Q 044755 876 SF 877 (1079)
Q Consensus 876 ~l 877 (1079)
.+
T Consensus 908 ~~ 909 (1153)
T PLN03210 908 EA 909 (1153)
T ss_pred cc
Confidence 44
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=2.9e-20 Score=210.82 Aligned_cols=460 Identities=21% Similarity=0.242 Sum_probs=243.0
Q ss_pred ccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccccCC-cccccCCcccceeecc
Q 044755 529 LEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFW 607 (1079)
Q Consensus 529 Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~l~ 607 (1079)
+..|.+..|.. ... |..+..+.-+|++||+++|.+..+|..|..+.+|+.|+++.|.+.. |.+++++.+|++|.|.
T Consensus 23 ~~~ln~~~N~~-l~~--pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSL-LSR--PLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhcccccc-ccC--chHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheec
Confidence 44555544322 122 5566666666999999999999999999999999999999999888 8889999999999999
Q ss_pred CCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEE
Q 044755 608 GSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTL 687 (1079)
Q Consensus 608 ~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 687 (1079)
+|.+..+|.++..+++|++|++++| .+..+|.- +..++.+..+..++| .. +..++... ++.+
T Consensus 100 ~n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~-i~~lt~~~~~~~s~N-~~--------------~~~lg~~~-ik~~ 161 (1081)
T KOG0618|consen 100 NNRLQSLPASISELKNLQYLDLSFN-HFGPIPLV-IEVLTAEEELAASNN-EK--------------IQRLGQTS-IKKL 161 (1081)
T ss_pred cchhhcCchhHHhhhcccccccchh-ccCCCchh-HHhhhHHHHHhhhcc-hh--------------hhhhcccc-chhh
Confidence 9999999999999999999999997 67777764 777888888887776 11 11111111 2222
Q ss_pred EEEeeCCC-CCCchhhhcccce-eeeee-------ecCCcccceEeeccccccccccccccccccCCCceeeccCCCCcc
Q 044755 688 EVHVKNDN-VLPEGFFARKLER-FKISK-------LQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFM 758 (1079)
Q Consensus 688 ~l~~~~~~-~~~~~~~~~~L~~-L~l~~-------~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 758 (1079)
++..+... .++.... .++. +.+.. ...+++|+.+....+.. ..+. ..-++|+.|+...|+-..
T Consensus 162 ~l~~n~l~~~~~~~i~--~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~l-----s~l~-~~g~~l~~L~a~~n~l~~ 233 (1081)
T KOG0618|consen 162 DLRLNVLGGSFLIDIY--NLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQL-----SELE-ISGPSLTALYADHNPLTT 233 (1081)
T ss_pred hhhhhhcccchhcchh--hhheeeecccchhhhhhhhhccchhhhhhhhccc-----ceEE-ecCcchheeeeccCccee
Confidence 22221110 0110000 0000 11000 11122222222221111 0010 112556666665554321
Q ss_pred eecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeecccc
Q 044755 759 CIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR 838 (1079)
Q Consensus 759 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 838 (1079)
.... ..-.+|++++++.. ++..++. -.+.+++|+.|++.+ +.+..+|. -+....+|+.|.+..|.
T Consensus 234 ~~~~--------p~p~nl~~~dis~n-~l~~lp~---wi~~~~nle~l~~n~-N~l~~lp~--ri~~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 234 LDVH--------PVPLNLQYLDISHN-NLSNLPE---WIGACANLEALNANH-NRLVALPL--RISRITSLVSLSAAYNE 298 (1081)
T ss_pred eccc--------cccccceeeecchh-hhhcchH---HHHhcccceEecccc-hhHHhhHH--HHhhhhhHHHHHhhhhh
Confidence 1000 11235666666542 2332221 134566677776665 44444432 12233445555444332
Q ss_pred ccccccccccccccccccccccccccEEecCCCCCccccccCc-cccccccccccccccccccccc--------------
Q 044755 839 NIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEV-KKNREAQGMHETCSNKISSFED-------------- 903 (1079)
Q Consensus 839 ~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------- 903 (1079)
++.++ .....+.+|++|+|... +|.++|... ......-+......++++....
T Consensus 299 -l~yip----------~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyl 366 (1081)
T KOG0618|consen 299 -LEYIP----------PFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYL 366 (1081)
T ss_pred -hhhCC----------Ccccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHH
Confidence 33333 22334788888888653 455544321 0000000111111222222111
Q ss_pred -ccccccccccccccccccceeeecccceeeecCCCCccccccccccceEEEEccCcccccccccchhhhccccceEEEe
Q 044755 904 -KLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEIC 982 (1079)
Q Consensus 904 -~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~ 982 (1079)
........+..+..+.+|+.|++++|.+..+ |...+.++..|+.|++++| +|+.+ +.....++.|+.|...
T Consensus 367 anN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f-----pas~~~kle~LeeL~LSGN-kL~~L--p~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 367 ANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF-----PASKLRKLEELEELNLSGN-KLTTL--PDTVANLGRLHTLRAH 438 (1081)
T ss_pred hcCcccccchhhhccccceeeeeecccccccC-----CHHHHhchHHhHHHhcccc-hhhhh--hHHHHhhhhhHHHhhc
Confidence 0011112233344556666666666655554 3334445566666666665 55555 2444455566666554
Q ss_pred cccccceeecccccccccCCcccccccCeeecccCCCcccc--CCCccccCCCCccEEEEecCCCceeeccccccccccc
Q 044755 983 HCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCL--YPGMHTSEWPALKLLKVSDCDQVTVFDSELFSFCKSS 1060 (1079)
Q Consensus 983 ~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l--~~~~~~~~l~sL~~L~i~~C~~L~~lp~~l~~~~~~~ 1060 (1079)
++ .+..+ | ++ ..+|.|+.++++. ++|+.. |.... .|.|++|+++|-+.+..=.+.+..+..+.
T Consensus 439 sN-~l~~f--P-e~-------~~l~qL~~lDlS~-N~L~~~~l~~~~p---~p~LkyLdlSGN~~l~~d~~~l~~l~~l~ 503 (1081)
T KOG0618|consen 439 SN-QLLSF--P-EL-------AQLPQLKVLDLSC-NNLSEVTLPEALP---SPNLKYLDLSGNTRLVFDHKTLKVLKSLS 503 (1081)
T ss_pred CC-ceeec--h-hh-------hhcCcceEEeccc-chhhhhhhhhhCC---CcccceeeccCCcccccchhhhHHhhhhh
Confidence 43 33333 3 22 2378889999864 666654 33322 37899999999887654334444555555
Q ss_pred ccCCCCC
Q 044755 1061 EEDKPDI 1067 (1079)
Q Consensus 1061 ~~~~~~~ 1067 (1079)
..+|...
T Consensus 504 ~~~i~~~ 510 (1081)
T KOG0618|consen 504 QMDITLN 510 (1081)
T ss_pred heecccC
Confidence 6666655
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=4.9e-21 Score=196.72 Aligned_cols=201 Identities=24% Similarity=0.349 Sum_probs=109.2
Q ss_pred ceeEEEecCCCCCCCCCcc-CCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEec
Q 044755 506 ECYAISLRGCSIHELPEGL-ECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCL 584 (1079)
Q Consensus 506 ~~~~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L 584 (1079)
.+..+.++.+....+|..+ ++.++..|.++.+... .+ |..+ ..+..|+.|++++|.+..+|++|+.+..|..|+.
T Consensus 69 ~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~l--p~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-EL--PEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDA 144 (565)
T ss_pred ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hc--cHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhhhc
Confidence 3444555555555555433 4455555555443321 22 3322 4455555566666666666666666666666666
Q ss_pred cccccCC-cccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccC
Q 044755 585 VECMLDD-IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDD 663 (1079)
Q Consensus 585 ~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 663 (1079)
.+|++.. |.+++.+.+|..|++.+|+++++|...-+++.|++||...| .++.+|++ ++.|.+|..|++..|.+..-+
T Consensus 145 ~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~-lg~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 145 TNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPE-LGGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred cccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChh-hcchhhhHHHHhhhcccccCC
Confidence 6555555 55566666666666666655555555444555666655554 45555555 555555555555555443222
Q ss_pred CCCCch----------hhhcch-hhhccCCCCcEEEEEeeCCCCCCchhhh-cccceeeee
Q 044755 664 EGPNSE----------RINARL-DELMHLPRLTTLEVHVKNDNVLPEGFFA-RKLERFKIS 712 (1079)
Q Consensus 664 ~~~~~~----------~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~ 712 (1079)
+.+... .....+ +.++++++|..|+++.|+.+.+|....+ ++|++|+++
T Consensus 223 ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLS 283 (565)
T ss_pred CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhccc
Confidence 111000 011222 3455889999999999999999987654 334444433
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=8.8e-21 Score=204.37 Aligned_cols=314 Identities=20% Similarity=0.232 Sum_probs=235.5
Q ss_pred cccceeEEEecCCCCCCCCC-ccCCCcccEEEecCCCC-cccccCCcchhccCCcceEEEecCccccccCcccccccccc
Q 044755 503 ALKECYAISLRGCSIHELPE-GLECLRLEFLHINPKDS-FFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQ 580 (1079)
Q Consensus 503 ~~~~~~~l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~-~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 580 (1079)
..+++.|+++..|....+.. ...++.||++.+..|+. ...+ |.++| .+..|.+|||++|++++.|..+...+++-
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGi--P~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGI--PTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCC--Cchhc-ccccceeeecchhhhhhcchhhhhhcCcE
Confidence 36788999999888866654 44789999999987653 2345 77776 69999999999999999999999999999
Q ss_pred EEeccccccCC-cc-cccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeeccccc
Q 044755 581 TLCLVECMLDD-IA-IIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCF 658 (1079)
Q Consensus 581 ~L~L~~~~l~~-~~-~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 658 (1079)
+|+|++|+|.. |. -+-+|..|-+|||++|.+..||..+.+|.+|++|+|++| .+..+.-..+..|++|+.|++++..
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N-PL~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN-PLNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC-hhhHHHHhcCccchhhhhhhccccc
Confidence 99999999988 64 456999999999999999999999999999999999998 4544433335678889999988754
Q ss_pred ccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhh-hcccceeeeee---------ecCCcccceEeeccc
Q 044755 659 VEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFF-ARKLERFKISK---------LQGIKDVEYLCLDKS 728 (1079)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~---------~~~l~~L~~L~L~~~ 728 (1079)
-+ ....+..+..+.||+.++++.|....+|..++ +.+|++|.++. .....+|+.|.++.+
T Consensus 209 RT----------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 209 RT----------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN 278 (1255)
T ss_pred ch----------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc
Confidence 32 33456677778899999999999998988765 47777777664 112457777777766
Q ss_pred cccccccccccccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEe
Q 044755 729 QDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRV 808 (1079)
Q Consensus 729 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l 808 (1079)
+... .... ...++.|+.|++.++.-. ....+...+.+.+|+.+...+ ++++-++. ....+++|+.|.+
T Consensus 279 QLt~-LP~a--vcKL~kL~kLy~n~NkL~-----FeGiPSGIGKL~~Levf~aan-N~LElVPE---glcRC~kL~kL~L 346 (1255)
T KOG0444|consen 279 QLTV-LPDA--VCKLTKLTKLYANNNKLT-----FEGIPSGIGKLIQLEVFHAAN-NKLELVPE---GLCRCVKLQKLKL 346 (1255)
T ss_pred hhcc-chHH--HhhhHHHHHHHhccCccc-----ccCCccchhhhhhhHHHHhhc-cccccCch---hhhhhHHHHHhcc
Confidence 5321 1111 135678888887765321 122223335677788888776 35555532 2446889999999
Q ss_pred ecCCCCCcccchHHhccCCccceEeeccccccccccc
Q 044755 809 ELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFV 845 (1079)
Q Consensus 809 ~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~ 845 (1079)
+. +.|..+|. .++.++.|+.|++.+.+++..-|.
T Consensus 347 ~~-NrLiTLPe--aIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 347 DH-NRLITLPE--AIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cc-cceeechh--hhhhcCCcceeeccCCcCccCCCC
Confidence 75 78888875 567789999999999999866553
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=2.9e-18 Score=194.74 Aligned_cols=398 Identities=21% Similarity=0.222 Sum_probs=225.6
Q ss_pred CCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccccCC-cccccCCcccce
Q 044755 525 ECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEI 603 (1079)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~ 603 (1079)
++-+|++|++.++... .+ |.. +..+.+|+.|+++.|.|.++|.+++++.+|++|+|.+|.+.. |.++..+++|++
T Consensus 43 ~~v~L~~l~lsnn~~~-~f--p~~-it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQIS-SF--PIQ-ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQY 118 (1081)
T ss_pred heeeeEEeeccccccc-cC--Cch-hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccc
Confidence 3455888888876543 22 333 367889999999999999999999999999999999998877 889999999999
Q ss_pred eeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCC
Q 044755 604 LSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPR 683 (1079)
Q Consensus 604 L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 683 (1079)
||+++|.+...|..+..+..+..++.++|..+..++. +. .+++++..+... +..+.++.++.+
T Consensus 119 LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----~~-ik~~~l~~n~l~-----------~~~~~~i~~l~~ 181 (1081)
T KOG0618|consen 119 LDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-----TS-IKKLDLRLNVLG-----------GSFLIDIYNLTH 181 (1081)
T ss_pred cccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-----cc-chhhhhhhhhcc-----------cchhcchhhhhe
Confidence 9999999999999888888888888888744443332 21 444444433222 112222333322
Q ss_pred CcEEEEEeeCCCCCCchhhh----------cccceeeeeeecCCcccceEeeccccccccccccccccccCCCceeeccC
Q 044755 684 LTTLEVHVKNDNVLPEGFFA----------RKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQN 753 (1079)
Q Consensus 684 L~~L~l~~~~~~~~~~~~~~----------~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~ 753 (1079)
.|++..+....+ ....+ ..|..+.+. -++++.|+.+.+........ ..-.+|+.++++.
T Consensus 182 --~ldLr~N~~~~~-dls~~~~l~~l~c~rn~ls~l~~~----g~~l~~L~a~~n~l~~~~~~----p~p~nl~~~dis~ 250 (1081)
T KOG0618|consen 182 --QLDLRYNEMEVL-DLSNLANLEVLHCERNQLSELEIS----GPSLTALYADHNPLTTLDVH----PVPLNLQYLDISH 250 (1081)
T ss_pred --eeecccchhhhh-hhhhccchhhhhhhhcccceEEec----CcchheeeeccCcceeeccc----cccccceeeecch
Confidence 344444433311 00011 122222221 24455555555443311110 0113445555544
Q ss_pred CCCcceecccCCcCCCCCCCCcccee-----------------------eccccccccccccCcCCcCCCCCcceEEeec
Q 044755 754 NPDFMCIVDSKERVPLDDAFPILESL-----------------------NLYNLIKLERICQDRLSVQSFNELKTIRVEL 810 (1079)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~L~~L-----------------------~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~ 810 (1079)
+.... + ..|. ..+++|+.+ .+..+ .++.+ +...+.+.+|+.|++..
T Consensus 251 n~l~~-l---p~wi---~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yi---p~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 251 NNLSN-L---PEWI---GACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYI---PPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred hhhhc-c---hHHH---HhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhC---CCcccccceeeeeeehh
Confidence 32110 0 0111 233444444 44332 23333 22234467777777766
Q ss_pred CCCCCcccchHHhccCCccceEeeccccccccccccc--------------cccc-cccccccccccccEEecCCCCCcc
Q 044755 811 CDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVD--------------GEYD-AIDHQKIEFSQLRTLCLGSLPELT 875 (1079)
Q Consensus 811 c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--------------~~~~-~~~~~~~~~~~L~~L~L~~c~~L~ 875 (1079)
+++.++|+.....-..+|..|..+. ..+...+..+ +..+ ..-.....+++|+.|+|++. .|.
T Consensus 320 -N~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~ 396 (1081)
T KOG0618|consen 320 -NNLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLN 396 (1081)
T ss_pred -ccccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccc
Confidence 5666665421111111233333322 2222222111 0000 00012234566777776653 344
Q ss_pred ccccCcccccccccccccccccccccccccccccccccccccccccceeeecccceeeecCCCCccccccccccceEEEE
Q 044755 876 SFCCEVKKNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL 955 (1079)
Q Consensus 876 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i 955 (1079)
++|.. ....+..|+.|++++|+++.++ .....++.|+.|..
T Consensus 397 ~fpas---------------------------------~~~kle~LeeL~LSGNkL~~Lp------~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 397 SFPAS---------------------------------KLRKLEELEELNLSGNKLTTLP------DTVANLGRLHTLRA 437 (1081)
T ss_pred cCCHH---------------------------------HHhchHHhHHHhcccchhhhhh------HHHHhhhhhHHHhh
Confidence 44432 3445889999999999999873 24456788888888
Q ss_pred ccCcccccccccchhhhccccceEEEecccccceeecccccccccCCcccccccCeeecccCCCc
Q 044755 956 SKCPKLKYIFSASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPEL 1020 (1079)
Q Consensus 956 ~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L 1020 (1079)
.+| ++..+ | .+..+++|+.+|++.+ ++..+..++.. | -|+|++|++++...+
T Consensus 438 hsN-~l~~f-P--e~~~l~qL~~lDlS~N-~L~~~~l~~~~-----p---~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 438 HSN-QLLSF-P--ELAQLPQLKVLDLSCN-NLSEVTLPEAL-----P---SPNLKYLDLSGNTRL 489 (1081)
T ss_pred cCC-ceeec-h--hhhhcCcceEEecccc-hhhhhhhhhhC-----C---CcccceeeccCCccc
Confidence 776 56655 2 6778999999999654 67777544432 1 289999999987753
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=3.4e-15 Score=135.98 Aligned_cols=165 Identities=24% Similarity=0.332 Sum_probs=122.6
Q ss_pred CCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccccCC-ccccc
Q 044755 518 HELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIG 596 (1079)
Q Consensus 518 ~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~ 596 (1079)
.+++..+.++++..|.++.+.. ..+ |.++ ..+.+|.+|++.+|+++++|.+|+.++.||.|++.-|.+.. |..+|
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl-~~v--ppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKL-TVV--PPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred hhcccccchhhhhhhhcccCce-eec--CCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 3444455666666666666543 233 4444 67888888888888888888888888888888888888766 78888
Q ss_pred CCcccceeeccCCcCc--ccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcc
Q 044755 597 KLKNLEILSFWGSVIV--MLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINAR 674 (1079)
Q Consensus 597 ~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 674 (1079)
.++-|+.||+.+|++. .+|..|..++-|+-|++++| ..+.+|++ +++|++||.|.+..|.+. ..
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll------------~l 165 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLL------------SL 165 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchh------------hC
Confidence 8888888888887554 57877777888888888886 77777777 788888888887766443 45
Q ss_pred hhhhccCCCCcEEEEEeeCCCCCCch
Q 044755 675 LDELMHLPRLTTLEVHVKNDNVLPEG 700 (1079)
Q Consensus 675 ~~~l~~l~~L~~L~l~~~~~~~~~~~ 700 (1079)
+.+++.+..|+.|++.++....+|+.
T Consensus 166 pkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred cHHHHHHHHHHHHhcccceeeecChh
Confidence 67777788888888888887777765
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=2.6e-14 Score=130.28 Aligned_cols=151 Identities=23% Similarity=0.348 Sum_probs=133.4
Q ss_pred ccceeEEEecCCCCCCCCCcc-CCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEE
Q 044755 504 LKECYAISLRGCSIHELPEGL-ECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTL 582 (1079)
Q Consensus 504 ~~~~~~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 582 (1079)
...+.++.++.|.+..+|..+ ++.+|+.|.++++.. .++ |.. ++.+.+||.|+++-|.+..+|..++.++.|++|
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi-e~l--p~~-issl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-EEL--PTS-ISSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh-hhc--Chh-hhhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 467788889999888887655 899999999988654 334 544 488999999999999999999999999999999
Q ss_pred eccccccCC---cccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccc
Q 044755 583 CLVECMLDD---IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 583 ~L~~~~l~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 659 (1079)
||.+|.+++ |..+..+.-|+.|+++.|.++.+|..+++|++||.|.+++| .+-.+|.. ++.|+.|++|++.+|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhccccee
Confidence 999999877 78889999999999999999999999999999999999997 78888877 89999999999999876
Q ss_pred c
Q 044755 660 E 660 (1079)
Q Consensus 660 ~ 660 (1079)
.
T Consensus 186 ~ 186 (264)
T KOG0617|consen 186 T 186 (264)
T ss_pred e
Confidence 5
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.38 E-value=3.3e-12 Score=151.56 Aligned_cols=94 Identities=19% Similarity=0.195 Sum_probs=68.1
Q ss_pred CcceEEEecCccccccCccccccccccEEeccccccCC-cccccCCcccceeeccCCcCcccChhhccCCcccEEccccc
Q 044755 554 RKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNC 632 (1079)
Q Consensus 554 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~ 632 (1079)
..-.+|++++++++.+|..+. .+|+.|++.+|.++. |. .+++|++|++++|.++.+|.. .++|+.|++++|
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 446678889988888888775 478888888888877 43 257888888888888888753 357788888886
Q ss_pred ccccccChhhhhcccccceeeccccccc
Q 044755 633 FKLKVIAPNVISRLVRLEELYMSNCFVE 660 (1079)
Q Consensus 633 ~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 660 (1079)
.+..+|.. ..+|+.|++++|.+.
T Consensus 273 -~L~~Lp~l----p~~L~~L~Ls~N~Lt 295 (788)
T PRK15387 273 -PLTHLPAL----PSGLCKLWIFGNQLT 295 (788)
T ss_pred -chhhhhhc----hhhcCEEECcCCccc
Confidence 56666542 245667777776543
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.29 E-value=1.8e-10 Score=147.87 Aligned_cols=290 Identities=17% Similarity=0.225 Sum_probs=176.7
Q ss_pred cccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCC
Q 044755 155 EAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 233 (1079)
..++-|..-.+.+-+ ....+++.|+|++|.||||++.++.+. ++.++|+++.. ..++..+...++..++.
T Consensus 14 ~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~ 84 (903)
T PRK04841 14 HNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQ 84 (903)
T ss_pred cccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHH
Confidence 355666655544432 245789999999999999999998853 23689999964 44666666666666632
Q ss_pred Cccc--------------cchHHHHHHHHHHHHc-CCcEEEEEeCCCCccc--cc-cccCCCCCCCCCcEEEEEecChhh
Q 044755 234 VLEE--------------ETGSRRASRLYERLKK-EEKILIILDNIWKCVD--LE-AVGIPFGDDHKGCKLLLTARDRNV 295 (1079)
Q Consensus 234 ~~~~--------------~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~--~~-~l~~~l~~~~~gs~iivTtR~~~v 295 (1079)
.... .........+...+.. +.+++||+||+....+ .. .+...+.....+.++|||||....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 85 ATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred hcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 1110 1111223344444543 6899999999976521 11 222112223346788899998522
Q ss_pred hh--hc-CCCceEeCC----CCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHhcCChhHHHHH
Q 044755 296 LF--RM-GSQKNFSID----ILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIARALRNKSVPEWKSA 368 (1079)
Q Consensus 296 ~~--~~-~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~ 368 (1079)
.. .+ -.....+++ +|+.+|+.++|....+.... .+.+.+|.+.|+|.|+++..++..+...... ....
T Consensus 165 ~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~ 239 (903)
T PRK04841 165 LGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDS 239 (903)
T ss_pred CchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhh
Confidence 11 11 112245565 99999999999887754322 3457889999999999999988776543210 0111
Q ss_pred HHHhcCCCcCCCCCCchhhhhhHH-HhhccCChHHHHHHHHHhcccCCCcchhHHHHHHHhhccccccCCHHHHHHHHHH
Q 044755 369 LQELRMPSEVNFEGVPAEAYSTIE-LSFKNLKGEQLKKFFMLCSLLGNSICTSYLFQCCMGLGILQKANKLEDARNKLYA 447 (1079)
Q Consensus 369 ~~~l~~~~~~~~~~~~~~~~~~l~-~sy~~L~~~~lk~cf~~~s~fp~~~~~~~li~~w~aeg~i~~~~~~~~~~~~~~~ 447 (1079)
...+... . ...+...+. -.++.||++ .+..+...|+++ .+..+ +.. .+.. . .++ .+
T Consensus 240 ~~~~~~~---~----~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~-~~~~~-l~~-----~l~~-~---~~~----~~ 296 (903)
T PRK04841 240 ARRLAGI---N----ASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR-SMNDA-LIV-----RVTG-E---ENG----QM 296 (903)
T ss_pred hHhhcCC---C----chhHHHHHHHHHHhcCCHH-HHHHHHHhcccc-cCCHH-HHH-----HHcC-C---CcH----HH
Confidence 1111000 0 122444433 347899997 899999999998 55433 221 1111 1 112 23
Q ss_pred HHHHHHhhccccc-cC-CCCcEeehHHHHHHHHHHh
Q 044755 448 LVHELRDSCLLLE-GD-SNQQLSMHDVIRDVAISIA 481 (1079)
Q Consensus 448 ~~~~L~~~~l~~~-~~-~~~~~~~Hdlv~~~~~~~~ 481 (1079)
.+++|.+.+++.. .+ ....|+.|++++++++...
T Consensus 297 ~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 297 RLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 4788888888653 33 3347999999999998875
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=4e-13 Score=139.06 Aligned_cols=124 Identities=21% Similarity=0.342 Sum_probs=103.1
Q ss_pred EEEecCCCCcccccCCcchhccCCcceEEEecCcccccc-CccccccccccEEeccc-cccCC-c-ccccCCcccceeec
Q 044755 531 FLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVE-CMLDD-I-AIIGKLKNLEILSF 606 (1079)
Q Consensus 531 ~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~-~~l~~-~-~~i~~L~~L~~L~l 606 (1079)
.+.+..|. ...+ |...|+.+++||.|||++|+|+.+ |+.+..|..|..|-+-+ |+|++ | ..+++|..|+-|.+
T Consensus 71 eirLdqN~-I~~i--P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 71 EIRLDQNQ-ISSI--PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred EEEeccCC-cccC--ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 34444433 3445 888899999999999999999987 88899999988887766 78998 5 67899999999999
Q ss_pred cCCcCcccChh-hccCCcccEEcccccccccccChhhhhcccccceeeccccc
Q 044755 607 WGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCF 658 (1079)
Q Consensus 607 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 658 (1079)
.-|++..++.. +..|++|..|.+.+| .++.++.+.+..+..++++++..+.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 99988887654 889999999999986 7888888888999999999887654
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.28 E-value=3.5e-11 Score=142.94 Aligned_cols=252 Identities=20% Similarity=0.156 Sum_probs=136.7
Q ss_pred eEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEecccc
Q 044755 508 YAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVEC 587 (1079)
Q Consensus 508 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~ 587 (1079)
..+.+..+.+..+|..+. ++|+.|.+.+|.. ..+ |. ..++|++|++++|+++.+|.. .++|++|++++|
T Consensus 204 ~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~L-t~L--P~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP-AHITTLVIPDNNL-TSL--PA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred cEEEcCCCCCCcCCcchh-cCCCEEEccCCcC-CCC--CC----CCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 345555666666665443 3667777666432 233 32 246677777777777777653 356777777777
Q ss_pred ccCC-cccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCC
Q 044755 588 MLDD-IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGP 666 (1079)
Q Consensus 588 ~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 666 (1079)
.++. |. -..+|+.|++++|.++.+|.. +++|++|++++| .+..+|.. ..+|+.|++++|.+..
T Consensus 273 ~L~~Lp~---lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~~----- 336 (788)
T PRK15387 273 PLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTS----- 336 (788)
T ss_pred chhhhhh---chhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCcccc-----
Confidence 7665 32 124566777777777777652 456777777776 56666542 1345666666665430
Q ss_pred CchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccccccccCCC
Q 044755 667 NSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRL 746 (1079)
Q Consensus 667 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L 746 (1079)
.+ .+ ..+|+.|++++|.+..+|.. .++|..|.++++... . ++ ...++|
T Consensus 337 -------LP-~l--p~~Lq~LdLS~N~Ls~LP~l----------------p~~L~~L~Ls~N~L~-~----LP-~l~~~L 384 (788)
T PRK15387 337 -------LP-TL--PSGLQELSVSDNQLASLPTL----------------PSELYKLWAYNNRLT-S----LP-ALPSGL 384 (788)
T ss_pred -------cc-cc--ccccceEecCCCccCCCCCC----------------Ccccceehhhccccc-c----Cc-cccccc
Confidence 00 01 13577777777766666542 123344444433211 1 11 112456
Q ss_pred ceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHhccC
Q 044755 747 KHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCL 826 (1079)
Q Consensus 747 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l 826 (1079)
+.|+++++.- ..+ + ...++|+.|+++++ .+..++. .+.+|+.|++++ +.++.+|. .+..+
T Consensus 385 ~~LdLs~N~L-t~L-------P--~l~s~L~~LdLS~N-~LssIP~------l~~~L~~L~Ls~-NqLt~LP~--sl~~L 444 (788)
T PRK15387 385 KELIVSGNRL-TSL-------P--VLPSELKELMVSGN-RLTSLPM------LPSGLLSLSVYR-NQLTRLPE--SLIHL 444 (788)
T ss_pred ceEEecCCcc-cCC-------C--CcccCCCEEEccCC-cCCCCCc------chhhhhhhhhcc-CcccccCh--HHhhc
Confidence 6666665531 111 0 12345666666664 3433311 234566666666 45565553 23456
Q ss_pred CccceEeecccc
Q 044755 827 PRLERIAVINCR 838 (1079)
Q Consensus 827 ~~L~~L~i~~c~ 838 (1079)
++|+.|++++++
T Consensus 445 ~~L~~LdLs~N~ 456 (788)
T PRK15387 445 SSETTVNLEGNP 456 (788)
T ss_pred cCCCeEECCCCC
Confidence 667777766654
No 21
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.20 E-value=8.9e-09 Score=118.10 Aligned_cols=284 Identities=17% Similarity=0.188 Sum_probs=165.7
Q ss_pred cccccHHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 044755 155 EAFESRLCALKSVQNALT----DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEK 230 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 230 (1079)
..++||+++++++...+. ......+.|+|++|+|||++++.++++.......-.++++++....+...++..++.+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 458899999999988874 2345678899999999999999999987644323457788888778888999999999
Q ss_pred hCCC-cc--ccchHHHHHHHHHHHHc-CCcEEEEEeCCCCcc------ccccccCCCCCCCCCcE--EEEEecChhhhhh
Q 044755 231 LGLV-LE--EETGSRRASRLYERLKK-EEKILIILDNIWKCV------DLEAVGIPFGDDHKGCK--LLLTARDRNVLFR 298 (1079)
Q Consensus 231 l~~~-~~--~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~------~~~~l~~~l~~~~~gs~--iivTtR~~~v~~~ 298 (1079)
+... .+ .....+....+.+.+.+ +++.+||+|+++... .+..+...+. ...+++ ||.++....+...
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~~~ 188 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFLYI 188 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchhhh
Confidence 8652 11 12233445556666653 466899999998743 1222222111 112333 6666665543322
Q ss_pred cC-------CCceEeCCCCCHHHHHHHHHHHhcCC----C-CChhhHHHHHHHHHHcCCCchHHHHHHHHH--h---cC-
Q 044755 299 MG-------SQKNFSIDILNEEEAWRLFKLMADDH----V-ENRELQSTATEVAQACKGLPIALTTIARAL--R---NK- 360 (1079)
Q Consensus 299 ~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~----~-~~~~~~~~~~~i~~~~~glPlai~~~~~~l--~---~~- 360 (1079)
.. ....+.+.+++.++..+++..++... . .+..++.+++......|..+.|+.++-... . +.
T Consensus 189 l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~ 268 (394)
T PRK00411 189 LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSR 268 (394)
T ss_pred cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCC
Confidence 11 12468999999999999999887321 1 122223333333333455777777664432 1 11
Q ss_pred --ChhHHHHHHHHhcCCCcCCCCCCchhhhhhHHHhhccCChHHHHHHHHHh-c-ccC---CCcchhHHHHH--HHhhcc
Q 044755 361 --SVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKFFMLC-S-LLG---NSICTSYLFQC--CMGLGI 431 (1079)
Q Consensus 361 --~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cf~~~-s-~fp---~~~~~~~li~~--w~aeg~ 431 (1079)
+.++...+.+.+. .....-.+..||.+ +..+++. + ... ..+...++... .+++.+
T Consensus 269 ~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~--~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 269 KVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLH--EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred CcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHH--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 4455665555431 12345568899986 3444432 1 221 23334444422 122211
Q ss_pred ccccCCHHHHHHHHHHHHHHHHhhcccc
Q 044755 432 LQKANKLEDARNKLYALVHELRDSCLLL 459 (1079)
Q Consensus 432 i~~~~~~~~~~~~~~~~~~~L~~~~l~~ 459 (1079)
-.... ....+.+++++|...+++.
T Consensus 333 ~~~~~----~~~~~~~~l~~L~~~glI~ 356 (394)
T PRK00411 333 GYEPR----THTRFYEYINKLDMLGIIN 356 (394)
T ss_pred CCCcC----cHHHHHHHHHHHHhcCCeE
Confidence 10000 2234455677777777775
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.20 E-value=1.1e-10 Score=139.84 Aligned_cols=242 Identities=17% Similarity=0.194 Sum_probs=118.8
Q ss_pred EEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccc
Q 044755 509 AISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECM 588 (1079)
Q Consensus 509 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 588 (1079)
.+.+.++.+..+|..+ .++|+.|.+.+|... .+ |..++ .+|++|++++|.++.+|..+. .+|+.|+|++|.
T Consensus 182 ~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt-sL--P~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 182 ELRLKILGLTTIPACI-PEQITTLILDNNELK-SL--PENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred EEEeCCCCcCcCCccc-ccCCcEEEecCCCCC-cC--Chhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 3444444444455433 235566666554322 33 43332 356666666666666665443 356666666666
Q ss_pred cCC-cccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCC
Q 044755 589 LDD-IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPN 667 (1079)
Q Consensus 589 l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 667 (1079)
+.. |..+. .+|++|++++|.+..+|..+. .+|++|++++| .++.+|.. +. .+|+.|++++|.+..
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~------ 318 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLTA------ 318 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCcccc------
Confidence 655 44332 356666666666666665443 35666666665 55555543 21 355666666554430
Q ss_pred chhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccccccccCCCc
Q 044755 668 SERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLK 747 (1079)
Q Consensus 668 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~ 747 (1079)
.+..+ .++|+.|.++.|....+|..+ .++|+.|+++++... .+ +..-.++|+
T Consensus 319 ------LP~~l--~~sL~~L~Ls~N~Lt~LP~~l---------------~~sL~~L~Ls~N~L~-~L----P~~lp~~L~ 370 (754)
T PRK15370 319 ------LPETL--PPGLKTLEAGENALTSLPASL---------------PPELQVLDVSKNQIT-VL----PETLPPTIT 370 (754)
T ss_pred ------CCccc--cccceeccccCCccccCChhh---------------cCcccEEECCCCCCC-cC----ChhhcCCcC
Confidence 01111 135666666665555554321 134555555554321 11 111124666
Q ss_pred eeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcC-CcCCCCCcceEEeecC
Q 044755 748 HLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL-SVQSFNELKTIRVELC 811 (1079)
Q Consensus 748 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~-~~~~~~~L~~L~l~~c 811 (1079)
.|++++|.- ..+ .. ...++|+.|+++++ ++..++.... ....++++..|.+.+.
T Consensus 371 ~LdLs~N~L-t~L------P~--~l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 371 TLDVSRNAL-TNL------PE--NLPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred EEECCCCcC-CCC------CH--hHHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCC
Confidence 777766531 111 00 11235666666663 3443321110 0123466777777663
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.18 E-value=1.6e-11 Score=149.25 Aligned_cols=98 Identities=33% Similarity=0.389 Sum_probs=54.6
Q ss_pred CcceEEEecCcc--ccccCcc-ccccccccEEeccccc-cCC-cccccCCcccceeeccCCcCcccChhhccCCcccEEc
Q 044755 554 RKLRVVDFTRMQ--LLLLPSS-IDLLVNLQTLCLVECM-LDD-IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLD 628 (1079)
Q Consensus 554 ~~Lr~L~L~~~~--i~~lp~~-i~~L~~L~~L~L~~~~-l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 628 (1079)
+.|+.|-+.+|. +..++.. +..+++|++|||++|. +.. |++|+.|.+||+|+++++.+..+|.++++|++|.+|+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence 356666666654 4444333 4556666666666654 444 6666666666666666666666666666666666666
Q ss_pred ccccccccccChhhhhccccccee
Q 044755 629 LSNCFKLKVIAPNVISRLVRLEEL 652 (1079)
Q Consensus 629 l~~~~~l~~~~~~~l~~L~~L~~L 652 (1079)
+..+..+..+ ++....|.+|++|
T Consensus 625 l~~~~~l~~~-~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 625 LEVTGRLESI-PGILLELQSLRVL 647 (889)
T ss_pred cccccccccc-cchhhhcccccEE
Confidence 6655444333 2323334444444
No 24
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.17 E-value=4.2e-09 Score=113.94 Aligned_cols=181 Identities=15% Similarity=0.228 Sum_probs=117.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHH---
Q 044755 173 DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYE--- 249 (1079)
Q Consensus 173 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~--- 249 (1079)
+....++.|+|++|+||||+++.+++...... + ...|+ +....+..+++..++..++.+............+..
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 34456899999999999999999998865221 1 22333 333457788999999998876543333333333332
Q ss_pred -HHHcCCcEEEEEeCCCCcc--ccccccC---CCCCCCCCcEEEEEecChhhhhhc----------CCCceEeCCCCCHH
Q 044755 250 -RLKKEEKILIILDNIWKCV--DLEAVGI---PFGDDHKGCKLLLTARDRNVLFRM----------GSQKNFSIDILNEE 313 (1079)
Q Consensus 250 -~l~~~~~~LlvlDdv~~~~--~~~~l~~---~l~~~~~gs~iivTtR~~~v~~~~----------~~~~~~~l~~L~~~ 313 (1079)
....+++.++|+||++... .++.+.. .-..+.....|++|.... ....+ .....+++++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 2335788999999998853 3444321 111122233556665543 21111 11346899999999
Q ss_pred HHHHHHHHHhcC---CCCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 044755 314 EAWRLFKLMADD---HVENRELQSTATEVAQACKGLPIALTTIARAL 357 (1079)
Q Consensus 314 ~~~~lf~~~~~~---~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 357 (1079)
|..+++...+.. .....-..+..+.|++.++|.|..|..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999988732 11122335789999999999999999988876
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.17 E-value=9.7e-11 Score=140.32 Aligned_cols=95 Identities=22% Similarity=0.293 Sum_probs=45.7
Q ss_pred cceEEEecCccccccCccccccccccEEeccccccCC-cccccCCcccceeeccCCcCcccChhhccCCcccEEcccccc
Q 044755 555 KLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCF 633 (1079)
Q Consensus 555 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~ 633 (1079)
.|+.|+|++|.++.+|..+. .+|++|++++|.++. |..+. .+|+.|++++|.+..+|..+. .+|+.|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N- 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN- 272 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC-
Confidence 45555555555555554432 355555555555544 33222 245555555555555554442 34555555544
Q ss_pred cccccChhhhhcccccceeecccccc
Q 044755 634 KLKVIAPNVISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 634 ~l~~~~~~~l~~L~~L~~L~l~~~~~ 659 (1079)
.+..+|.. +. .+|+.|++++|.+
T Consensus 273 ~L~~LP~~-l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 273 KISCLPEN-LP--EELRYLSVYDNSI 295 (754)
T ss_pred ccCccccc-cC--CCCcEEECCCCcc
Confidence 44444432 21 3455555555443
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.05 E-value=1.6e-07 Score=106.69 Aligned_cols=286 Identities=18% Similarity=0.179 Sum_probs=162.1
Q ss_pred ccccHHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHHHhhhc-CCC---CEEEEEEeCCccCHHHHHHHH
Q 044755 156 AFESRLCALKSVQNALTD----VNVSIVGVYGMGGIGKTTLVKEVARQARED-KLF---DLVVFSEVSQTLDIKKIQQEI 227 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~~~~~~~~~~~~~~i 227 (1079)
.++||++++++|..++.+ .....+.|+|++|+|||++++.++++.... ... -..+|+++....+...++..|
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i 95 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVEL 95 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHH
Confidence 588999999999999862 345688999999999999999999876421 111 246788888877888999999
Q ss_pred HHHh---CCCcc--ccchHHHHHHHHHHHH-cCCcEEEEEeCCCCcc-c----cccccCCC-CCCC--CCcEEEEEecCh
Q 044755 228 AEKL---GLVLE--EETGSRRASRLYERLK-KEEKILIILDNIWKCV-D----LEAVGIPF-GDDH--KGCKLLLTARDR 293 (1079)
Q Consensus 228 ~~~l---~~~~~--~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~-~----~~~l~~~l-~~~~--~gs~iivTtR~~ 293 (1079)
+.++ +...+ ..+..+....+.+.+. .+++++||+|+++... . +..+.... .... ....+|++|...
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~ 175 (365)
T TIGR02928 96 ANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDL 175 (365)
T ss_pred HHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCc
Confidence 9988 33222 1122333455555554 3568899999998762 1 11221110 1111 233455555544
Q ss_pred hhhhhc-------CCCceEeCCCCCHHHHHHHHHHHhcC----CCCChhhHHHHHHHHHHcCCCch-HHHHHHHHH--h-
Q 044755 294 NVLFRM-------GSQKNFSIDILNEEEAWRLFKLMADD----HVENRELQSTATEVAQACKGLPI-ALTTIARAL--R- 358 (1079)
Q Consensus 294 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~~~----~~~~~~~~~~~~~i~~~~~glPl-ai~~~~~~l--~- 358 (1079)
.....+ -....+.+++++.++..+++..++.. ....++..+.+.+++....|-|- |+.++-... .
T Consensus 176 ~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~ 255 (365)
T TIGR02928 176 KFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAE 255 (365)
T ss_pred chHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 322111 01246899999999999999998731 11223333445556667778774 333332221 1
Q ss_pred --cC---ChhHHHHHHHHhcCCCcCCCCCCchhhhhhHHHhhccCChHHHHHHHHHhccc---C-CCcchhHHHHHH--H
Q 044755 359 --NK---SVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKFFMLCSLL---G-NSICTSYLFQCC--M 427 (1079)
Q Consensus 359 --~~---~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cf~~~s~f---p-~~~~~~~li~~w--~ 427 (1079)
+. +.++.+.+.+.+. .....-+...||.+ .+..+..+... . ..+...++...+ +
T Consensus 256 ~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 256 REGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 11 3344444444321 12334566788886 34333332211 1 234444555433 1
Q ss_pred hhccccccCCHHHHHHHHHHHHHHHHhhccccc
Q 044755 428 GLGILQKANKLEDARNKLYALVHELRDSCLLLE 460 (1079)
Q Consensus 428 aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 460 (1079)
++.+--.. -....+.++++.|...+++..
T Consensus 321 ~~~~~~~~----~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 321 CEDIGVDP----LTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred HHhcCCCC----CcHHHHHHHHHHHHhcCCeEE
Confidence 22111011 123445556777777777753
No 27
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.04 E-value=6.9e-10 Score=117.60 Aligned_cols=193 Identities=21% Similarity=0.321 Sum_probs=106.9
Q ss_pred cccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHH---------
Q 044755 157 FESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEI--------- 227 (1079)
Q Consensus 157 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i--------- 227 (1079)
|+||++++++|.+++..+....+.|+|+.|+|||+|++.+.+..+.. .+ .++|+....... ......+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~-~~~y~~~~~~~~-~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEK-GY-KVVYIDFLEESN-ESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSH-HHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CC-cEEEEecccchh-hhHHHHHHHHHHHHHH
Confidence 68999999999999987767899999999999999999999987422 11 344544444332 2222222
Q ss_pred -HHHhCCCcc-----------ccchHHHHHHHHHHHHc-CCcEEEEEeCCCCcc-cc---c----cccCCCCC--CCCCc
Q 044755 228 -AEKLGLVLE-----------EETGSRRASRLYERLKK-EEKILIILDNIWKCV-DL---E----AVGIPFGD--DHKGC 284 (1079)
Q Consensus 228 -~~~l~~~~~-----------~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~-~~---~----~l~~~l~~--~~~gs 284 (1079)
...+..... ..........+.+.+.+ +++++||+||+.... .. . .+...+.. .....
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 111211100 11223345556666653 356999999997755 11 1 11111111 22344
Q ss_pred EEEEEecChhhhhh--------cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHH
Q 044755 285 KLLLTARDRNVLFR--------MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTT 352 (1079)
Q Consensus 285 ~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 352 (1079)
.+|+++........ .+....+.+++|+.+++++++...+.....-+.-.+..++|...+||.|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 45566555544432 233345999999999999999998743311112345579999999999988754
No 28
>PF05729 NACHT: NACHT domain
Probab=99.03 E-value=2e-09 Score=107.17 Aligned_cols=142 Identities=22% Similarity=0.315 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCEEEEEEeCCccCHH---HHHHHHHHHhCCCccccchHHHHHHHHH
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKL----FDLVVFSEVSQTLDIK---KIQQEIAEKLGLVLEEETGSRRASRLYE 249 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 249 (1079)
+++.|+|.+|+||||+++.++.+...... +...+|++.+...... .+...+..+....... ....+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP-----IEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh-----hHHHHHH
Confidence 58999999999999999999988765443 3456777776544332 3333444333221111 0112333
Q ss_pred HHHcCCcEEEEEeCCCCccc---------cccccC-CCCC-CCCCcEEEEEecChhh---hhhcCCCceEeCCCCCHHHH
Q 044755 250 RLKKEEKILIILDNIWKCVD---------LEAVGI-PFGD-DHKGCKLLLTARDRNV---LFRMGSQKNFSIDILNEEEA 315 (1079)
Q Consensus 250 ~l~~~~~~LlvlDdv~~~~~---------~~~l~~-~l~~-~~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~~~~~ 315 (1079)
.+.+.++++||+|++++... +..+.. .+.. ...+++|+||+|.... .........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 34457999999999987532 111111 1121 2468999999998866 22344456899999999999
Q ss_pred HHHHHHHh
Q 044755 316 WRLFKLMA 323 (1079)
Q Consensus 316 ~~lf~~~~ 323 (1079)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998876
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.00 E-value=1.3e-08 Score=117.26 Aligned_cols=289 Identities=20% Similarity=0.218 Sum_probs=181.7
Q ss_pred ccccHHHHHHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCC
Q 044755 156 AFESRLCALKSVQNALTD-VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 233 (1079)
..+-|. ++++.|.+ .+.+++.|..++|.|||||+.+....... =..+.|.++.. ..++...+.-++..++.
T Consensus 20 ~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~al~~ 92 (894)
T COG2909 20 NYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIAALQQ 92 (894)
T ss_pred cccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHHHHHH
Confidence 444554 45555554 47899999999999999999999874321 24589999875 45677777878777764
Q ss_pred Cccccch--------------HHHHHHHHHHHHc-CCcEEEEEeCCCCccc---cccccCCCCCCCCCcEEEEEecChhh
Q 044755 234 VLEEETG--------------SRRASRLYERLKK-EEKILIILDNIWKCVD---LEAVGIPFGDDHKGCKLLLTARDRNV 295 (1079)
Q Consensus 234 ~~~~~~~--------------~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~---~~~l~~~l~~~~~gs~iivTtR~~~v 295 (1079)
..+...+ ......++..+.. .++.++|+||..-..+ -..+...+.....+-..|||||+..-
T Consensus 93 ~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 93 ATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred hCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 3322111 1123344444432 4789999999765421 12222223334457899999998844
Q ss_pred hhh--c-CCCceEeCC----CCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHhcC-ChhHHHH
Q 044755 296 LFR--M-GSQKNFSID----ILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIARALRNK-SVPEWKS 367 (1079)
Q Consensus 296 ~~~--~-~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~-~~~~w~~ 367 (1079)
... + -.+..++++ .|+.+|+.++|....+..-+ +..++.+.+..+|-+-|+..++=.+++. +.+.-..
T Consensus 173 l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~ 248 (894)
T COG2909 173 LGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLR 248 (894)
T ss_pred CcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh
Confidence 321 1 112233343 48899999999988755433 3347889999999999999988888743 3222211
Q ss_pred HHHHhcCCCcCCCCCCchhhhh-hHHHhhccCChHHHHHHHHHhcccCCCcchhHHHHHHHhhccccccCCHHHHHHHHH
Q 044755 368 ALQELRMPSEVNFEGVPAEAYS-TIELSFKNLKGEQLKKFFMLCSLLGNSICTSYLFQCCMGLGILQKANKLEDARNKLY 446 (1079)
Q Consensus 368 ~~~~l~~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~lk~cf~~~s~fp~~~~~~~li~~w~aeg~i~~~~~~~~~~~~~~ 446 (1079)
.+.- ..+-+.. ...--++.||++ +|..++-||++++-- +.|+..- ..++.+.
T Consensus 249 ~LsG-----------~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f~--~eL~~~L-------------tg~~ng~ 301 (894)
T COG2909 249 GLSG-----------AASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRFN--DELCNAL-------------TGEENGQ 301 (894)
T ss_pred hccc-----------hHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHhh--HHHHHHH-------------hcCCcHH
Confidence 1110 0000111 223457789997 899999999998321 1222221 1122233
Q ss_pred HHHHHHHhhccccc--cCCCCcEeehHHHHHHHHHHhh
Q 044755 447 ALVHELRDSCLLLE--GDSNQQLSMHDVIRDVAISIAC 482 (1079)
Q Consensus 447 ~~~~~L~~~~l~~~--~~~~~~~~~Hdlv~~~~~~~~~ 482 (1079)
..+++|.+++++.. ++....|+.|.+..||.+....
T Consensus 302 amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 302 AMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred HHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 45889999998762 4566789999999999987654
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.98 E-value=5.4e-11 Score=123.60 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=35.2
Q ss_pred eccccccCC--cccccCCcccceeeccCCcCccc-ChhhccCCcccEEcccccccccccChhhhhcccccceeecccc
Q 044755 583 CLVECMLDD--IAIIGKLKNLEILSFWGSVIVML-PEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 657 (1079)
Q Consensus 583 ~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 657 (1079)
.|..|+|+. +..|+.+++|+.|||++|.|+.+ |..|..|.+|-.|-+.++.+++.+|.+.|++|..|+.|.+.-|
T Consensus 73 rLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 73 RLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 344444443 23444444444444444444444 3444455555444444433455555555555555555554443
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.85 E-value=1.2e-07 Score=105.13 Aligned_cols=247 Identities=15% Similarity=0.134 Sum_probs=130.5
Q ss_pred cCCccccccHHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALT-----DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQ 225 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 225 (1079)
|.....|+|+++.++.+..++. ......+.|+|++|+|||++|+.+++..... + .++.... ......+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~ 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLA 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHH
Confidence 3456679999999998877765 2345678899999999999999999987532 1 2222221 11122233
Q ss_pred HHHHHhCCCc----cc-cc-hHHHHHHHHHHHHcCCcEEEEEeCCCCccccccccCCCCCCCCCcEEEEEecChhhhhhc
Q 044755 226 EIAEKLGLVL----EE-ET-GSRRASRLYERLKKEEKILIILDNIWKCVDLEAVGIPFGDDHKGCKLLLTARDRNVLFRM 299 (1079)
Q Consensus 226 ~i~~~l~~~~----~~-~~-~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~ 299 (1079)
.++..++... ++ +. .....+.++..+ ++.+..+|+|+..+...+. ..++ ..+-|..|+|...+...+
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~-e~~~~~~~l~~~~~~~~~~---~~l~---~~~li~at~~~~~l~~~L 167 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAM-EDFRLDIMIGKGPAARSIR---LDLP---PFTLIGATTRAGLLTSPL 167 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHH-HhcceeeeeccCcccccee---ecCC---CceEEeecCCcccCCHHH
Confidence 3333332110 00 00 001111222222 2445556666544432221 1111 245566677755443322
Q ss_pred --CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHhcCChhHHHHHHHHhcCCCc
Q 044755 300 --GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPSE 377 (1079)
Q Consensus 300 --~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~~~ 377 (1079)
.....+++++++.++..+++.+.++.... .--.+.+..|++.|+|.|-.+..+...+. .|.... .....
T Consensus 168 ~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~---~~~~I 238 (328)
T PRK00080 168 RDRFGIVQRLEFYTVEELEKIVKRSARILGV-EIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK---GDGVI 238 (328)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc---CCCCC
Confidence 12356899999999999999998843221 12245689999999999954444433221 121111 00000
Q ss_pred CCCCCCchhhhhhHHHhhccCChHHHHHHH-HHhcccC-CCcchhHH
Q 044755 378 VNFEGVPAEAYSTIELSFKNLKGEQLKKFF-MLCSLLG-NSICTSYL 422 (1079)
Q Consensus 378 ~~~~~~~~~~~~~l~~sy~~L~~~~lk~cf-~~~s~fp-~~~~~~~l 422 (1079)
. . ..-......+...|..|+..+ +.-+ .....|+ ..+..+.+
T Consensus 239 ~-~-~~v~~~l~~~~~~~~~l~~~~-~~~l~~~~~~~~~~~~~~~~~ 282 (328)
T PRK00080 239 T-K-EIADKALDMLGVDELGLDEMD-RKYLRTIIEKFGGGPVGLDTL 282 (328)
T ss_pred C-H-HHHHHHHHHhCCCcCCCCHHH-HHHHHHHHHHcCCCceeHHHH
Confidence 0 0 001123344556677787763 4444 3666666 34444444
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=5.5e-10 Score=111.59 Aligned_cols=136 Identities=18% Similarity=0.239 Sum_probs=115.9
Q ss_pred cCCcceEEEecCccccccCccccccccccEEeccccccCCcccccCCcccceeeccCCcCcccChhhccCCcccEEcccc
Q 044755 552 GMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSN 631 (1079)
Q Consensus 552 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~ 631 (1079)
.-+.|..|||++|.|+.+-.++.-++.+|.|++++|.+....++..|.+|+.|||++|.+.++-..-.+|.+.++|.+.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 44678999999999999999999999999999999999888889999999999999998888866667889999999999
Q ss_pred cccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCch
Q 044755 632 CFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEG 700 (1079)
Q Consensus 632 ~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 700 (1079)
| .++.+. ++++|.+|..|++.+|.+. .-.....++++|-|+.+.+.+|.+..++..
T Consensus 362 N-~iE~LS--GL~KLYSLvnLDl~~N~Ie----------~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 362 N-KIETLS--GLRKLYSLVNLDLSSNQIE----------ELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred h-hHhhhh--hhHhhhhheeccccccchh----------hHHHhcccccccHHHHHhhcCCCccccchH
Confidence 7 777764 3899999999999998764 223456788889999999988887776654
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.84 E-value=3.6e-07 Score=100.72 Aligned_cols=187 Identities=15% Similarity=0.103 Sum_probs=110.3
Q ss_pred cccccHHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHH
Q 044755 155 EAFESRLCALKSVQNALT-----DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
..|+|+++.++++..++. ......+.++|++|+|||+||+.+++..... + ..+..+....... +...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~-l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGD-LAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchh-HHHHHH
Confidence 468999999999988886 2345678899999999999999999887522 2 2222221112222 222333
Q ss_pred HhCCCc----cc--cchHHHHHHHHHHHHcCCcEEEEEeCCCCccccccccCCCCCCCCCcEEEEEecChhhhhhc--CC
Q 044755 230 KLGLVL----EE--ETGSRRASRLYERLKKEEKILIILDNIWKCVDLEAVGIPFGDDHKGCKLLLTARDRNVLFRM--GS 301 (1079)
Q Consensus 230 ~l~~~~----~~--~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~--~~ 301 (1079)
.++... ++ .-.......++..+. +.+..+|+|+..+...+.. +++ +.+-|..||+...+...+ ..
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~-~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAME-DFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHh-hhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhhc
Confidence 332211 00 001111222333332 4556677776655444432 222 245566677765443321 12
Q ss_pred CceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHHH
Q 044755 302 QKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIAR 355 (1079)
Q Consensus 302 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 355 (1079)
...+++++++.++..+++.+.++.... .-..+....|++.|+|.|-.+..++.
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 356899999999999999998843211 12245678899999999966544443
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=3.1e-09 Score=103.29 Aligned_cols=103 Identities=25% Similarity=0.310 Sum_probs=25.5
Q ss_pred cceEEEecCccccccCcccc-ccccccEEeccccccCCcccccCCcccceeeccCCcCcccChhh-ccCCcccEEccccc
Q 044755 555 KLRVVDFTRMQLLLLPSSID-LLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSVIVMLPEEL-GHLTKLRQLDLSNC 632 (1079)
Q Consensus 555 ~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~ 632 (1079)
.+|.|+|+++.|+.+ +.++ .+.+|+.|+|++|.++..+.+..|.+|++|++++|.+++++..+ ..+++|++|++++|
T Consensus 20 ~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 20 KLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS
T ss_pred ccccccccccccccc-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC
Confidence 445555555555544 2333 34555555555555555545555555555555555555554433 23555555555554
Q ss_pred ccccccCh-hhhhcccccceeecccccc
Q 044755 633 FKLKVIAP-NVISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 633 ~~l~~~~~-~~l~~L~~L~~L~l~~~~~ 659 (1079)
.+..+.. ..++.+++|+.|++.+|.+
T Consensus 99 -~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 99 -KISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp ----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred -cCCChHHhHHHHcCCCcceeeccCCcc
Confidence 3333221 1244455555555555544
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.82 E-value=1.3e-09 Score=121.65 Aligned_cols=138 Identities=20% Similarity=0.143 Sum_probs=75.2
Q ss_pred hhccCCcceEEEecCcccc-----ccCccccccccccEEeccccccCC--------cccccCCcccceeeccCCcCc-cc
Q 044755 549 FFTGMRKLRVVDFTRMQLL-----LLPSSIDLLVNLQTLCLVECMLDD--------IAIIGKLKNLEILSFWGSVIV-ML 614 (1079)
Q Consensus 549 ~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~--------~~~i~~L~~L~~L~l~~~~l~-~l 614 (1079)
+|..+..|++|+++++.++ .++..+...++|++|+++++.+.. +..+.++.+|+.|++++|.+. ..
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 3556666777777777663 345555666667777777766541 234556667777777766554 23
Q ss_pred ChhhccCCc---ccEEcccccccccccC----hhhhhcc-cccceeecccccccccCCCCCchhhhcchhhhccCCCCcE
Q 044755 615 PEELGHLTK---LRQLDLSNCFKLKVIA----PNVISRL-VRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTT 686 (1079)
Q Consensus 615 p~~i~~L~~---L~~L~l~~~~~l~~~~----~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 686 (1079)
+..+..+.+ |++|++++| .+.... ...+..+ ++|++|++++|.+.. .........+..+++|+.
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-------~~~~~~~~~~~~~~~L~~ 169 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG-------ASCEALAKALRANRDLKE 169 (319)
T ss_pred HHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc-------hHHHHHHHHHHhCCCcCE
Confidence 333444443 777777665 333111 1123444 666777776665431 011123334455556666
Q ss_pred EEEEeeCC
Q 044755 687 LEVHVKND 694 (1079)
Q Consensus 687 L~l~~~~~ 694 (1079)
|+++.+..
T Consensus 170 L~l~~n~l 177 (319)
T cd00116 170 LNLANNGI 177 (319)
T ss_pred EECcCCCC
Confidence 66655443
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.78 E-value=1.3e-10 Score=122.01 Aligned_cols=121 Identities=21% Similarity=0.247 Sum_probs=55.6
Q ss_pred ccccceeeeccc-ceeeecCCCCccccccccccceEEEEccCcccccccccchhhhccccceEEEecccccceeeccccc
Q 044755 918 LSNLEVLEMNKV-NIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCKGLQEIISKEGA 996 (1079)
Q Consensus 918 l~~L~~L~l~~~-~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 996 (1079)
..+|+.|.++.| .++...-.. .-.+.+.|+.+++.+|....+-.......+++.|++|.++.|..+++- +.
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~----l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~----gi 390 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTM----LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE----GI 390 (483)
T ss_pred CCceEEEeccccchhhhhhhhh----hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh----hh
Confidence 456666666666 333221000 112345566666666654443311223345566666666666554433 11
Q ss_pred ccccCCcccccccCeeecccCCCccccCCCccccCCCCccEEEEecCCCce
Q 044755 997 DDQVLPNFVFPQVTSLRLSGLPELKCLYPGMHTSEWPALKLLKVSDCDQVT 1047 (1079)
Q Consensus 997 ~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~ 1047 (1079)
.+.......+..|..|.+++||.+..--.... ..+++|+.+++.+|.+++
T Consensus 391 ~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l-~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 391 RHLSSSSCSLEGLEVLELDNCPLITDATLEHL-SICRNLERIELIDCQDVT 440 (483)
T ss_pred hhhhhccccccccceeeecCCCCchHHHHHHH-hhCcccceeeeechhhhh
Confidence 11000001144566666666665544321111 145666666666666653
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=8.2e-09 Score=100.38 Aligned_cols=135 Identities=27% Similarity=0.220 Sum_probs=48.0
Q ss_pred CCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccccCCc-c
Q 044755 515 CSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDI-A 593 (1079)
Q Consensus 515 ~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~~-~ 593 (1079)
+.++..+...++.++|.|.+.++.... + ...-..+.+|++|++++|.|+.++ .+..+++|++|++++|.++.. +
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~-I---e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQIST-I---ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CH
T ss_pred ccccccccccccccccccccccccccc-c---cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 344455555566677778887765432 2 122125678888888888888874 577888888888888888874 3
Q ss_pred cc-cCCcccceeeccCCcCcccC--hhhccCCcccEEcccccccccccC---hhhhhcccccceeecc
Q 044755 594 II-GKLKNLEILSFWGSVIVMLP--EELGHLTKLRQLDLSNCFKLKVIA---PNVISRLVRLEELYMS 655 (1079)
Q Consensus 594 ~i-~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~~---~~~l~~L~~L~~L~l~ 655 (1079)
.+ ..+++|+.|++++|.+..+- ..+..+++|++|++.+|+ +...+ ...+..+++|+.|+-.
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTE
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCE
Confidence 44 35888888998888776653 346778888899888873 43332 2346678888888743
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.74 E-value=8.3e-10 Score=120.18 Aligned_cols=134 Identities=25% Similarity=0.325 Sum_probs=69.4
Q ss_pred ccCCcceEEEecCccccccCccccccccccEEeccccccCC-cccccCCcccceeeccCCcCcccChhhccCCcccEEcc
Q 044755 551 TGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDL 629 (1079)
Q Consensus 551 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 629 (1079)
+.|..|..|.|++|.+..+|..+++|..|.||+|+.|+++. |..++.|. |+.|-+++|+++.+|..++.+..|.+|+.
T Consensus 95 ~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 95 CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhh
Confidence 34444555555555555555555555555555555555554 44444332 55555555555555555555555555555
Q ss_pred cccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCch
Q 044755 630 SNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEG 700 (1079)
Q Consensus 630 ~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 700 (1079)
+.| .+..+|.. ++.+.+|+.|.+..|.+. ..++++..|+ |..|++++|++..+|..
T Consensus 174 s~n-ei~slpsq-l~~l~slr~l~vrRn~l~------------~lp~El~~Lp-Li~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 174 SKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLE------------DLPEELCSLP-LIRLDFSCNKISYLPVD 229 (722)
T ss_pred hhh-hhhhchHH-hhhHHHHHHHHHhhhhhh------------hCCHHHhCCc-eeeeecccCceeecchh
Confidence 554 45555444 455555555555544332 3344444332 45555555555555544
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.70 E-value=1.1e-08 Score=114.07 Aligned_cols=162 Identities=19% Similarity=0.137 Sum_probs=87.8
Q ss_pred CCcccEEEecCCCCcccc-cCCcchhccCCcceEEEecCccccc-------cCccccccccccEEeccccccCC--cccc
Q 044755 526 CLRLEFLHINPKDSFFEI-NNPCNFFTGMRKLRVVDFTRMQLLL-------LPSSIDLLVNLQTLCLVECMLDD--IAII 595 (1079)
Q Consensus 526 ~~~Lr~L~l~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~l~~--~~~i 595 (1079)
+.+|+.|.+.++.....- ......+...+.|+.|+++++.+.. ++..+..+.+|++|++++|.+.. +..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 344666666665431110 0012223455567777777665542 23445566677777777777653 3444
Q ss_pred cCCcc---cceeeccCCcCc-----ccChhhccC-CcccEEcccccccccccC----hhhhhcccccceeeccccccccc
Q 044755 596 GKLKN---LEILSFWGSVIV-----MLPEELGHL-TKLRQLDLSNCFKLKVIA----PNVISRLVRLEELYMSNCFVEWD 662 (1079)
Q Consensus 596 ~~L~~---L~~L~l~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~~l~~~~----~~~l~~L~~L~~L~l~~~~~~~~ 662 (1079)
..+.+ |++|++++|.+. .+...+..+ ++|+.|++++| .+.... ...+..+.+|++|++++|.+..
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~- 179 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGD- 179 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCCCch-
Confidence 44443 777777777554 223345555 77777777776 344111 1224556677777777765531
Q ss_pred CCCCCchhhhcchhhhccCCCCcEEEEEeeCCC
Q 044755 663 DEGPNSERINARLDELMHLPRLTTLEVHVKNDN 695 (1079)
Q Consensus 663 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 695 (1079)
.........+..+++|+.|+++.+.+.
T Consensus 180 ------~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 180 ------AGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred ------HHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 111223344555567777777765543
No 40
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.68 E-value=1.3e-06 Score=101.66 Aligned_cols=203 Identities=19% Similarity=0.196 Sum_probs=125.0
Q ss_pred cccccHHHHHHHHHHHhcC----C-CceEEEEEcCCCCcHHHHHHHHHHHhhh---cCCCC--EEEEEEeCCccCHHHHH
Q 044755 155 EAFESRLCALKSVQNALTD----V-NVSIVGVYGMGGIGKTTLVKEVARQARE---DKLFD--LVVFSEVSQTLDIKKIQ 224 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~----~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~~~~~~~~~~~ 224 (1079)
..+.||++++++|...|.+ . ...++.|+|++|+|||+.++.|.+.... +.... .+++|++..-.+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 3467999999999888862 2 2357789999999999999999887642 11222 36788888878889999
Q ss_pred HHHHHHhCCCccc--cchHHHHHHHHHHHHc--CCcEEEEEeCCCCccc--cccccCCCC-CCCCCcEEEE--EecChh-
Q 044755 225 QEIAEKLGLVLEE--ETGSRRASRLYERLKK--EEKILIILDNIWKCVD--LEAVGIPFG-DDHKGCKLLL--TARDRN- 294 (1079)
Q Consensus 225 ~~i~~~l~~~~~~--~~~~~~~~~l~~~l~~--~~~~LlvlDdv~~~~~--~~~l~~~l~-~~~~gs~iiv--TtR~~~- 294 (1079)
..|+.++....+. ....+....++..+.+ ....+||||+|+.... -+.+...+. ....+++|+| +|...+
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDL 914 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhc
Confidence 9999888432221 1223344555555432 2345899999986421 011111111 1123556554 333211
Q ss_pred -------hhhhcCCCceEeCCCCCHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHHcCCCchHHHHHHHHHh
Q 044755 295 -------VLFRMGSQKNFSIDILNEEEAWRLFKLMADD---HVENRELQSTATEVAQACKGLPIALTTIARALR 358 (1079)
Q Consensus 295 -------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~---~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~ 358 (1079)
+...++ ...+...|++.++-.+++.+++.. ...+..++-+|+.++...|..-.||.++-.+..
T Consensus 915 perLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 915 PERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred chhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 111222 224678999999999999999843 123334445555555555667777777665554
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.66 E-value=7e-10 Score=116.55 Aligned_cols=268 Identities=18% Similarity=0.179 Sum_probs=166.9
Q ss_pred CcccceEeeccccccccccccccccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCC
Q 044755 717 IKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS 796 (1079)
Q Consensus 717 l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~ 796 (1079)
+++|++|.+..|..+.+..-.....++++|++|.+++|+.+.. ........+...++.+.+.+|..++.-.. ...
T Consensus 189 C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~----~gv~~~~rG~~~l~~~~~kGC~e~~le~l-~~~ 263 (483)
T KOG4341|consen 189 CRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG----NGVQALQRGCKELEKLSLKGCLELELEAL-LKA 263 (483)
T ss_pred cchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc----CcchHHhccchhhhhhhhcccccccHHHH-HHH
Confidence 4556666666665555443332336788888888888876542 11111124555677777777765433111 111
Q ss_pred cCCCCCcceEEeecCCCCCcccchHHhccCCccceEeeccccccccccccccccccccccccccccccEEecCCCCCccc
Q 044755 797 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTS 876 (1079)
Q Consensus 797 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~ 876 (1079)
.+.++-+.++++..|..+++........++..|+.+..++|..+...+.... ....++|+.|.+..|.++++
T Consensus 264 ~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL--------g~~~~~L~~l~l~~c~~fsd 335 (483)
T KOG4341|consen 264 AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL--------GQHCHNLQVLELSGCQQFSD 335 (483)
T ss_pred hccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH--------hcCCCceEEEeccccchhhh
Confidence 3456667788888998888765444445678899999999988765543221 12358899999999988766
Q ss_pred cccCcccccccccccccccccccccccccccccccccccccccccceeeecccceeeecCCCCccccccccccceEEEEc
Q 044755 877 FCCEVKKNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILS 956 (1079)
Q Consensus 877 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~ 956 (1079)
.... .---+.+.|+.+++..|.+..- ..+. ..-.+++.|+.|.++
T Consensus 336 ~~ft--------------------------------~l~rn~~~Le~l~~e~~~~~~d--~tL~-sls~~C~~lr~lsls 380 (483)
T KOG4341|consen 336 RGFT--------------------------------MLGRNCPHLERLDLEECGLITD--GTLA-SLSRNCPRLRVLSLS 380 (483)
T ss_pred hhhh--------------------------------hhhcCChhhhhhcccccceehh--hhHh-hhccCCchhccCChh
Confidence 4321 0112368889999988833321 0010 011257999999999
Q ss_pred cCcccccccc---cchhhhccccceEEEecccccceeecccccccccCCcccccccCeeecccCCCccccCCCccccCCC
Q 044755 957 KCPKLKYIFS---ASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGMHTSEWP 1033 (1079)
Q Consensus 957 ~c~~l~~l~~---~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~ 1033 (1079)
.|..+++-.. .....++..|+.|.+++||.+++.. .++ ...+++|+.+++.+|.....-+..-....+|
T Consensus 381 hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~----Le~----l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp 452 (483)
T KOG4341|consen 381 HCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT----LEH----LSICRNLERIELIDCQDVTKEAISRFATHLP 452 (483)
T ss_pred hhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH----HHH----HhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence 9988886521 1223457789999999999887552 122 1237899999999999887765443333456
Q ss_pred CccEEEE
Q 044755 1034 ALKLLKV 1040 (1079)
Q Consensus 1034 sL~~L~i 1040 (1079)
+++....
T Consensus 453 ~i~v~a~ 459 (483)
T KOG4341|consen 453 NIKVHAY 459 (483)
T ss_pred cceehhh
Confidence 6655444
No 42
>PRK06893 DNA replication initiation factor; Validated
Probab=98.66 E-value=2.6e-07 Score=96.17 Aligned_cols=152 Identities=16% Similarity=0.156 Sum_probs=95.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHc
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKK 253 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (1079)
...+.+.++|.+|+|||+|++.+++....+ ...+.|+++.... ... ..+.+.+.
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~~--------------------~~~~~~~~- 90 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YFS--------------------PAVLENLE- 90 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hhh--------------------HHHHhhcc-
Confidence 334678999999999999999999987533 2345677764210 000 01122222
Q ss_pred CCcEEEEEeCCCCc---ccccc-ccCCCCCC-CCCcEEEEEec-C---------hhhhhhcCCCceEeCCCCCHHHHHHH
Q 044755 254 EEKILIILDNIWKC---VDLEA-VGIPFGDD-HKGCKLLLTAR-D---------RNVLFRMGSQKNFSIDILNEEEAWRL 318 (1079)
Q Consensus 254 ~~~~LlvlDdv~~~---~~~~~-l~~~l~~~-~~gs~iivTtR-~---------~~v~~~~~~~~~~~l~~L~~~~~~~l 318 (1079)
+.-+||+||+|.. ..|+. +...+... ..|..+||+|. . +++..++.....++++++++++.+++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 3458999999974 34542 22222211 23556655444 3 35556667778999999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 044755 319 FKLMADDHVENRELQSTATEVAQACKGLPIALTTI 353 (1079)
Q Consensus 319 f~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 353 (1079)
+++.+.... -.--+++..-|++++.|-.-++..+
T Consensus 170 L~~~a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 170 LQRNAYQRG-IELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHH
Confidence 999883221 1222467888999998766554443
No 43
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.61 E-value=5e-07 Score=95.72 Aligned_cols=171 Identities=19% Similarity=0.219 Sum_probs=106.9
Q ss_pred cCCccccccHHHHH---HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHH
Q 044755 151 RKGYEAFESRLCAL---KSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEI 227 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 227 (1079)
|.....++|.+..+ .-|..++..+++.-.-.||++|+||||||+.+...... . |..++...+-.+-++++
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~--~-----f~~~sAv~~gvkdlr~i 92 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNA--A-----FEALSAVTSGVKDLREI 92 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCC--c-----eEEeccccccHHHHHHH
Confidence 44555677766544 33555566778888889999999999999999987642 2 34444443333333444
Q ss_pred HHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEE--EecChhhh--hh-cC
Q 044755 228 AEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLL--TARDRNVL--FR-MG 300 (1079)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv--TtR~~~v~--~~-~~ 300 (1079)
++.. .+....|++.+|++|.|..- .+-+.+ +|.-.+|.-|+| ||-++... .. ..
T Consensus 93 ~e~a----------------~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 93 IEEA----------------RKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred HHHH----------------HHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhh
Confidence 3321 12222379999999999764 233323 334456777776 66655321 11 34
Q ss_pred CCceEeCCCCCHHHHHHHHHHHhcC-----CCCCh-hhHHHHHHHHHHcCCCc
Q 044755 301 SQKNFSIDILNEEEAWRLFKLMADD-----HVENR-ELQSTATEVAQACKGLP 347 (1079)
Q Consensus 301 ~~~~~~l~~L~~~~~~~lf~~~~~~-----~~~~~-~~~~~~~~i~~~~~glP 347 (1079)
...++++++|+.++-..++.+.+.. ..... -.+++..-|++.++|=-
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 4578999999999999999995511 11111 12446677888888854
No 44
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.58 E-value=6.7e-07 Score=102.17 Aligned_cols=178 Identities=18% Similarity=0.206 Sum_probs=108.2
Q ss_pred CCccccccHHHHHHH---HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHH
Q 044755 152 KGYEAFESRLCALKS---VQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIA 228 (1079)
Q Consensus 152 ~~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 228 (1079)
.....|+|++..+.. +..++.......+.++|++|+||||+|+.+++.... .| +.++....-.+-++++.
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~--~~-----~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDA--PF-----EALSAVTSGVKDLREVI 81 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCC--CE-----EEEecccccHHHHHHHH
Confidence 344568898887665 778777777778889999999999999999987642 22 22222111111122222
Q ss_pred HHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEE--EecChhhh--hh-cCC
Q 044755 229 EKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLL--TARDRNVL--FR-MGS 301 (1079)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iiv--TtR~~~v~--~~-~~~ 301 (1079)
+.. ......+++.+|++|+++... +.+.+...+. .|..+++ ||.+.... .. ...
T Consensus 82 ~~~----------------~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR 142 (413)
T PRK13342 82 EEA----------------RQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSR 142 (413)
T ss_pred HHH----------------HHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhcc
Confidence 211 111223688999999998752 3333333322 2444444 34433211 11 222
Q ss_pred CceEeCCCCCHHHHHHHHHHHhcCCC-CC-hhhHHHHHHHHHHcCCCchHHHHHHH
Q 044755 302 QKNFSIDILNEEEAWRLFKLMADDHV-EN-RELQSTATEVAQACKGLPIALTTIAR 355 (1079)
Q Consensus 302 ~~~~~l~~L~~~~~~~lf~~~~~~~~-~~-~~~~~~~~~i~~~~~glPlai~~~~~ 355 (1079)
...+++.+++.++.+.++.+.+.... .. .-..+..+.|++.|+|-+..+..+..
T Consensus 143 ~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 143 AQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred ceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 36799999999999999998763211 11 22356678899999998876654433
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.58 E-value=4.7e-09 Score=114.50 Aligned_cols=135 Identities=24% Similarity=0.285 Sum_probs=75.9
Q ss_pred ccCCcceEEEecCccccccCccccccccccEEeccccccCC-cccccCCcccceeeccCCcCcccChhhccCCcccEEcc
Q 044755 551 TGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDL 629 (1079)
Q Consensus 551 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 629 (1079)
.++..|.+|||+.|++..+|..++.|+ |+.|.+++|+++. |+.++.+..|..||.+.|.+..+|..++.+.+|+.|.+
T Consensus 118 ~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence 455556666666666666666555543 5666666666555 55555555666666666666666666666666666666
Q ss_pred cccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchh
Q 044755 630 SNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGF 701 (1079)
Q Consensus 630 ~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 701 (1079)
+.| .+..+|+. +..| .|..|+++.|++. ..+-.+.+|.+|+.|.+.+|....-|..+
T Consensus 197 rRn-~l~~lp~E-l~~L-pLi~lDfScNkis------------~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 197 RRN-HLEDLPEE-LCSL-PLIRLDFSCNKIS------------YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred hhh-hhhhCCHH-HhCC-ceeeeecccCcee------------ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 554 45555554 3322 3555555555443 34445555556666666655555555444
No 46
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=6.6e-06 Score=90.83 Aligned_cols=199 Identities=22% Similarity=0.277 Sum_probs=130.3
Q ss_pred cccHHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 044755 157 FESRLCALKSVQNALT----DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLG 232 (1079)
Q Consensus 157 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (1079)
+.+|+.+++++...|. .....-+.|+|..|+|||+.++.|.+..+....=..+++|++-...+..+++..|+++++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 7799999999988876 333445999999999999999999998764322122899999999999999999999995
Q ss_pred -CCccccchHHHHHHHHHHHHc-CCcEEEEEeCCCCcccc--ccccCCCCC-CCCCcEEEE--EecChhhhhh-------
Q 044755 233 -LVLEEETGSRRASRLYERLKK-EEKILIILDNIWKCVDL--EAVGIPFGD-DHKGCKLLL--TARDRNVLFR------- 298 (1079)
Q Consensus 233 -~~~~~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~~--~~l~~~l~~-~~~gs~iiv--TtR~~~v~~~------- 298 (1079)
.+..+....+....+.+.+.+ ++.++||||+++....- +.+..-+.. ....++|++ .+-+......
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s 178 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKS 178 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhh
Confidence 333345555666677777754 68889999999875322 122111111 112454433 4444333222
Q ss_pred -cCCCceEeCCCCCHHHHHHHHHHHhc----CCCCChhhHHHHHH-HHHHcCCCchHHHHHHHH
Q 044755 299 -MGSQKNFSIDILNEEEAWRLFKLMAD----DHVENRELQSTATE-VAQACKGLPIALTTIARA 356 (1079)
Q Consensus 299 -~~~~~~~~l~~L~~~~~~~lf~~~~~----~~~~~~~~~~~~~~-i~~~~~glPlai~~~~~~ 356 (1079)
++. ..+...|.+.+|-.+.+..++. .....++.-+.+.. .++..|-.-.||.++...
T Consensus 179 ~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A 241 (366)
T COG1474 179 SLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRA 241 (366)
T ss_pred ccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 222 3488999999999999999982 22333333343444 444444555666554443
No 47
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.50 E-value=4.7e-06 Score=102.67 Aligned_cols=259 Identities=15% Similarity=0.186 Sum_probs=156.5
Q ss_pred cccHHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeC---Cc---cCHHHHHHHH
Q 044755 157 FESRLCALKSVQNALT---DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVS---QT---LDIKKIQQEI 227 (1079)
Q Consensus 157 ~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~---~~~~~~~~~i 227 (1079)
++||+.+.+.|.+.+. .+...++.|.|..|+|||+++++|.+....+ +...+--.+. .. ....+.++++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~--~~~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ--RGYFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc--ceeeeHhhcccccCCCchHHHHHHHHHH
Confidence 6799999999999887 4566799999999999999999999887633 1111111111 11 1123344444
Q ss_pred HHHh-------------------CCCccc-----------------------cchHHH-----HHHHHHHHHcCCcEEEE
Q 044755 228 AEKL-------------------GLVLEE-----------------------ETGSRR-----ASRLYERLKKEEKILII 260 (1079)
Q Consensus 228 ~~~l-------------------~~~~~~-----------------------~~~~~~-----~~~l~~~l~~~~~~Llv 260 (1079)
+.++ +..... .....+ ...+.....+.++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 4433 111000 000011 12222233356899999
Q ss_pred EeCCCCcc--ccc---cccCCCCC-CCCCcEEE--EEecCh--hhhhhcCCCceEeCCCCCHHHHHHHHHHHhcCCCCCh
Q 044755 261 LDNIWKCV--DLE---AVGIPFGD-DHKGCKLL--LTARDR--NVLFRMGSQKNFSIDILNEEEAWRLFKLMADDHVENR 330 (1079)
Q Consensus 261 lDdv~~~~--~~~---~l~~~l~~-~~~gs~ii--vTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 330 (1079)
+||+.-.+ .++ .+...... ...-..|. .|.+.. .+.........|.|.||+..+.-.+.....+... .
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--~ 237 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--L 237 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--c
Confidence 99994321 111 11111100 00011222 233322 2222234456899999999999999999885532 2
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHhcC-------ChhHHHHHHHHhcCCCcCCCCCCchhhhhhHHHhhccCChHHH
Q 044755 331 ELQSTATEVAQACKGLPIALTTIARALRNK-------SVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQL 403 (1079)
Q Consensus 331 ~~~~~~~~i~~~~~glPlai~~~~~~l~~~-------~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~l 403 (1079)
...+..+.|+++..|.|+.+.-+-..+... +...|..-...+.. .+..+.+...+..-.+.||.. .
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~------~~~~~~vv~~l~~rl~kL~~~-t 310 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI------LATTDAVVEFLAARLQKLPGT-T 310 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC------chhhHHHHHHHHHHHhcCCHH-H
Confidence 234668899999999999999988888753 23345433333221 111223566788899999997 7
Q ss_pred HHHHHHhcccCCCcchhHHHHHH
Q 044755 404 KKFFMLCSLLGNSICTSYLFQCC 426 (1079)
Q Consensus 404 k~cf~~~s~fp~~~~~~~li~~w 426 (1079)
++.+-..|++...|+.+.|...|
T Consensus 311 ~~Vl~~AA~iG~~F~l~~La~l~ 333 (849)
T COG3899 311 REVLKAAACIGNRFDLDTLAALA 333 (849)
T ss_pred HHHHHHHHHhCccCCHHHHHHHH
Confidence 99999999999988888776655
No 48
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.46 E-value=1.4e-06 Score=91.39 Aligned_cols=168 Identities=15% Similarity=0.169 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccc
Q 044755 160 RLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEET 239 (1079)
Q Consensus 160 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 239 (1079)
.+..++.+..++.......+.|+|..|+|||+||+.+++.... .....++++++.-.+. ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~--~~~~~~~i~~~~~~~~---~~-------------- 82 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE--RGKSAIYLPLAELAQA---DP-------------- 82 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEeHHHHHHh---HH--------------
Confidence 4556777777766556678999999999999999999988652 2345667766542210 00
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEeCCCCcc---ccc-cccCCCCC-CCCCcEEEEEecChh---------hhhhcCCCceE
Q 044755 240 GSRRASRLYERLKKEEKILIILDNIWKCV---DLE-AVGIPFGD-DHKGCKLLLTARDRN---------VLFRMGSQKNF 305 (1079)
Q Consensus 240 ~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~~~-~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~ 305 (1079)
.+...+. +.-+||+||++... .|. .+...+.. ...+.+||+||+... ....+.....+
T Consensus 83 ------~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i 154 (226)
T TIGR03420 83 ------EVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVF 154 (226)
T ss_pred ------HHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeE
Confidence 1111222 23389999998653 222 23222211 123447899888532 12223334689
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHHH
Q 044755 306 SIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIAR 355 (1079)
Q Consensus 306 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 355 (1079)
++.+++.++...++.+.+.... ..--.+..+.|++.+.|.|..+.-+..
T Consensus 155 ~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 155 QLPPLSDEEKIAALQSRAARRG-LQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred ecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 9999999999999987662211 112245577788889998877665543
No 49
>PF13173 AAA_14: AAA domain
Probab=98.45 E-value=3.9e-07 Score=85.44 Aligned_cols=119 Identities=23% Similarity=0.264 Sum_probs=81.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEE 255 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1079)
.+++.|.|+.|+||||++++++++.. ....++|++............+ ....+.+... .+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~~-~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLELIK-PG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhhc-cC
Confidence 36899999999999999999998764 2355788877765332111000 1112222222 37
Q ss_pred cEEEEEeCCCCccccccccCCCCCCCCCcEEEEEecChhhhhh------cCCCceEeCCCCCHHH
Q 044755 256 KILIILDNIWKCVDLEAVGIPFGDDHKGCKLLLTARDRNVLFR------MGSQKNFSIDILNEEE 314 (1079)
Q Consensus 256 ~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~------~~~~~~~~l~~L~~~~ 314 (1079)
+.+|++|++....+|......+.+.....+|++|+........ .+....+++.||+-.|
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 7889999999998888766666655567899999998766532 1233468999998776
No 50
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=1.4e-05 Score=93.22 Aligned_cols=186 Identities=13% Similarity=0.141 Sum_probs=114.3
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcCC-------------------CCEEE
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQAREDKL-------------------FDLVV 210 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 210 (1079)
+....+++|.+..++.|.+++..+++ ..+.++|..|+||||+|+.+.+....+.. |.-++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 34456788999999999999987664 45579999999999999999887643211 11233
Q ss_pred EEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEE
Q 044755 211 FSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLL 288 (1079)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iiv 288 (1079)
+++.+....+.+ ++++++.+. ..-..++.-++|||+++... .+..+...+-......++|+
T Consensus 92 EIDAas~rgVDd-IReLIe~a~----------------~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FIL 154 (830)
T PRK07003 92 EMDAASNRGVDE-MAALLERAV----------------YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFIL 154 (830)
T ss_pred EecccccccHHH-HHHHHHHHH----------------hccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 333322222211 112221110 00012455688899998763 35555444433345677777
Q ss_pred EecChhhh-hh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc-hHHHHHH
Q 044755 289 TARDRNVL-FR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP-IALTTIA 354 (1079)
Q Consensus 289 TtR~~~v~-~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~ 354 (1079)
||++..-. .. ......+.+..++.++..+.+.+.+..... ....+..+.|++.++|.. -|+..+-
T Consensus 155 aTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI-~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 155 ATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI-AFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred EECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 77765322 11 223457999999999999999988743221 123466888999998854 4555533
No 51
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.41 E-value=4.2e-08 Score=98.41 Aligned_cols=104 Identities=27% Similarity=0.290 Sum_probs=48.8
Q ss_pred CCcceEEEecCccccccCccccccccccEEeccccccCC-cccccCCcccceeeccCCcCcccChhhccCCcccEEcccc
Q 044755 553 MRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSN 631 (1079)
Q Consensus 553 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~ 631 (1079)
++.+|+|++++|.+..+-. +..|++|+.|||++|.++. -..-.+|-|.++|.|++|.+..+ +++++|.+|..||+++
T Consensus 306 ~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSS 383 (490)
T ss_pred ccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccc
Confidence 3445555555555544422 4445555555555555444 22333445555555555544444 2344555555555555
Q ss_pred cccccccCh-hhhhcccccceeecccccc
Q 044755 632 CFKLKVIAP-NVISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 632 ~~~l~~~~~-~~l~~L~~L~~L~l~~~~~ 659 (1079)
| +++.+.. ..|++|+.|++|.+.+|.+
T Consensus 384 N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 384 N-QIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred c-chhhHHHhcccccccHHHHHhhcCCCc
Confidence 4 3333321 2245555555555554433
No 52
>PRK04195 replication factor C large subunit; Provisional
Probab=98.41 E-value=2.3e-05 Score=91.53 Aligned_cols=251 Identities=15% Similarity=0.105 Sum_probs=139.0
Q ss_pred cCCccccccHHHHHHHHHHHhcC---C-CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTD---V-NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQE 226 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~---~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 226 (1079)
|.....++|+++.++++.+|+.. + ..+.+.|+|++|+||||+|+.++++.. |+ .+-++.+...+.. .+..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~ 83 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIER 83 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHH
Confidence 44456788999999999999862 2 267899999999999999999999864 33 3444555433322 2333
Q ss_pred HHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc------cccccCCCCCCCCCcEEEEEecChh-hhh-h
Q 044755 227 IAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD------LEAVGIPFGDDHKGCKLLLTARDRN-VLF-R 298 (1079)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~------~~~l~~~l~~~~~gs~iivTtR~~~-v~~-~ 298 (1079)
++...... ..+...++-+||+|+++.... +..+...+. ..+..||+|+.... ... .
T Consensus 84 ~i~~~~~~--------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 84 VAGEAATS--------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHHhhcc--------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 32221110 001112678999999987522 333322222 12345666664331 111 1
Q ss_pred -cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHhc-C---ChhHHHHHHHHhc
Q 044755 299 -MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIARALRN-K---SVPEWKSALQELR 373 (1079)
Q Consensus 299 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~-~---~~~~w~~~~~~l~ 373 (1079)
......+++.+++.++....+.+.+...... -..++...|++.++|-.-.+......+.. + +.+.-..+.. .
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~-i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~--~ 224 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIE-CDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR--R 224 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc--C
Confidence 1234579999999999999998887321111 12456889999999866554443333332 2 1222221211 0
Q ss_pred CCCcCCCCCCchhhhhhHHHhhccCChHHHHHHHHHhcccCCCcchhHHHHHHHhhccccccCCHHH
Q 044755 374 MPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKFFMLCSLLGNSICTSYLFQCCMGLGILQKANKLED 440 (1079)
Q Consensus 374 ~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cf~~~s~fp~~~~~~~li~~w~aeg~i~~~~~~~~ 440 (1079)
+....++.++..-+..=....+...+.. .+++. +.+-.|+.|.+.......++
T Consensus 225 --------d~~~~if~~l~~i~~~k~~~~a~~~~~~-----~~~~~-~~i~~~l~en~~~~~~~~~~ 277 (482)
T PRK04195 225 --------DREESIFDALDAVFKARNADQALEASYD-----VDEDP-DDLIEWIDENIPKEYDDPED 277 (482)
T ss_pred --------CCCCCHHHHHHHHHCCCCHHHHHHHHHc-----ccCCH-HHHHHHHHhccccccCCHHH
Confidence 1123356666655542222223322211 22222 56778999999775444444
No 53
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.40 E-value=5e-06 Score=82.54 Aligned_cols=175 Identities=18% Similarity=0.202 Sum_probs=93.7
Q ss_pred cCCccccccHHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALT-----DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQ 225 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 225 (1079)
|....+|+|.++.++.+.-++. ++...-+-.||++|+||||||..++++.... | .+.+...-....++
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~---~~~sg~~i~k~~dl-- 92 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--F---KITSGPAIEKAGDL-- 92 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHHH--
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--e---EeccchhhhhHHHH--
Confidence 5566789999988877654443 3457788999999999999999999987632 3 22322211111111
Q ss_pred HHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc---------ccccccC--CCCCCC----------CCc
Q 044755 226 EIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV---------DLEAVGI--PFGDDH----------KGC 284 (1079)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---------~~~~l~~--~l~~~~----------~gs 284 (1079)
..+...+ +++-+|++|++.... ..++... ....+. +-+
T Consensus 93 -------------------~~il~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 93 -------------------AAILTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp -------------------HHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred -------------------HHHHHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 1112222 245577778887641 1111111 111110 123
Q ss_pred EEEEEecChhhhhhcCCC--ceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHH
Q 044755 285 KLLLTARDRNVLFRMGSQ--KNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIA 354 (1079)
Q Consensus 285 ~iivTtR~~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 354 (1079)
-|=.|||...+...+... -..+++..+.+|-..+..+.+..-.. +-.++.+.+|++++.|-|--+.-+-
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-~i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI-EIDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHhcCCChHHHHHHH
Confidence 355688876555444332 34589999999999999988743221 2235679999999999996544433
No 54
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1.1e-05 Score=90.36 Aligned_cols=178 Identities=12% Similarity=0.171 Sum_probs=109.5
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCC-------------------CEEE
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQAREDKLF-------------------DLVV 210 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-------------------~~~~ 210 (1079)
|....+++|.+..++.+..++..+++ ..+.++|+.|+||||+|+.+++........ .-.+
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceE
Confidence 34455688999999999998886654 467899999999999999999876421111 1112
Q ss_pred EEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCCCCCCCc
Q 044755 211 FSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLK----KEEKILIILDNIWKCV--DLEAVGIPFGDDHKGC 284 (1079)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs 284 (1079)
++..+....+ +....+.+.+. .+++-++|+|+++... .++.+...+.......
T Consensus 92 ~~~~~~~~~v---------------------~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~ 150 (363)
T PRK14961 92 EIDAASRTKV---------------------EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHI 150 (363)
T ss_pred EecccccCCH---------------------HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 2222111111 11222222221 1355699999998764 3555544444434466
Q ss_pred EEEEEecCh-hhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHH
Q 044755 285 KLLLTARDR-NVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIAL 350 (1079)
Q Consensus 285 ~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 350 (1079)
++|++|.+. .+... ......+++.+++.++..+.+.+.+..... .-..+.++.|++.++|.|-.+
T Consensus 151 ~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 151 KFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI-DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred EEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 777766543 33222 223457999999999999999887732111 112356788999999977543
No 55
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.38 E-value=6e-06 Score=92.70 Aligned_cols=199 Identities=15% Similarity=0.130 Sum_probs=111.4
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC-EEEEEEeCCccCH--HHHHH--
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFD-LVVFSEVSQTLDI--KKIQQ-- 225 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~--~~~~~-- 225 (1079)
|.....++|++..++.+..++..+..+.+.++|+.|+||||+|+.+.+..... .+. ..++++++...+. ..+..
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDP 89 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCc
Confidence 34455788999999999999887776778899999999999999999876422 222 2345555432100 00000
Q ss_pred HHHHHhCCC-ccccchHHHHHHHHHHHH-----cCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEEEecChh-hh
Q 044755 226 EIAEKLGLV-LEEETGSRRASRLYERLK-----KEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLLTARDRN-VL 296 (1079)
Q Consensus 226 ~i~~~l~~~-~~~~~~~~~~~~l~~~l~-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~-v~ 296 (1079)
.....++.. .......+....+.+... .+.+-+||+||++... ....+...+......+++|+||.... +.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 000000000 000001111222222211 1344589999997652 22223222222234567888775432 22
Q ss_pred hhc-CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHH
Q 044755 297 FRM-GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALT 351 (1079)
Q Consensus 297 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 351 (1079)
..+ .....+++.+++.++...++.+.+...... --.+.++.+++.++|.+-.+.
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 221 223578999999999999998877322111 224568889999988765443
No 56
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=8.2e-08 Score=101.92 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=25.0
Q ss_pred cCCcceEEEecCccccccCc--cccccccccEEeccccccCC----cccccCCcccceeeccCC
Q 044755 552 GMRKLRVVDFTRMQLLLLPS--SIDLLVNLQTLCLVECMLDD----IAIIGKLKNLEILSFWGS 609 (1079)
Q Consensus 552 ~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~l~~----~~~i~~L~~L~~L~l~~~ 609 (1079)
++++||...|.++.+...+. ....|++++.|||++|-+.. ..-...|++|+.|+++.|
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc
Confidence 34444444444444443332 33444555555555444333 122334444444444444
No 57
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=5.6e-06 Score=98.44 Aligned_cols=183 Identities=15% Similarity=0.192 Sum_probs=112.9
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCceE-EEEEcCCCCcHHHHHHHHHHHhhhcCC-------------------CCEEE
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVSI-VGVYGMGGIGKTTLVKEVARQAREDKL-------------------FDLVV 210 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 210 (1079)
|.....++|.+..++.|.+++..+++.- +.++|..|+||||+|+.+++....... |.-++
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 3455678899999999999998776664 479999999999999999988643211 11123
Q ss_pred EEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEE
Q 044755 211 FSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLL 288 (1079)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv 288 (1079)
++.......+.. ++++...+. ..-..+++-++|+|++... ...+.+...+-......++|+
T Consensus 92 EidAas~~kVDd-IReLie~v~----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 92 EVDAASRTKVDD-TRELLDNVQ----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred EeccccccCHHH-HHHHHHHHH----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 332221112222 133332211 1111367779999999875 344444333333334556665
Q ss_pred Eec-Chhhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHH
Q 044755 289 TAR-DRNVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALT 351 (1079)
Q Consensus 289 TtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 351 (1079)
+|. ...+... ......+++.+++.++....+.+.+.... ...-.+.+..|++.++|.|--+.
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-LPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 554 4444322 22346899999999999999998873321 12224568889999999875433
No 58
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=9.6e-06 Score=89.25 Aligned_cols=175 Identities=16% Similarity=0.238 Sum_probs=115.0
Q ss_pred cccccHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhh----hcCCCCEEEEEEe-CCccCHHHHHHHHH
Q 044755 155 EAFESRLCALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQAR----EDKLFDLVVFSEV-SQTLDIKKIQQEIA 228 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~~-~~~~~~~~~~~~i~ 228 (1079)
..++|.+..++.+..++..++. ....++|+.|+||||+|+.+++..- ...|+|...|... +....+++ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 3567888889999999986655 4668999999999999999998652 2457787767652 33334444 23333
Q ss_pred HHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCC--CccccccccCCCCCCCCCcEEEEEecChhhhh-h-cCCCce
Q 044755 229 EKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIW--KCVDLEAVGIPFGDDHKGCKLLLTARDRNVLF-R-MGSQKN 304 (1079)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~-~-~~~~~~ 304 (1079)
+.+.... . .+++=++|+|+++ +...++.+...+.....++.+|++|.+.+... . ......
T Consensus 83 ~~~~~~p---------------~-~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKKP---------------Y-EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcCc---------------c-cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 3332110 0 1344455566554 44567777666666667888888887654321 1 223458
Q ss_pred EeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHH
Q 044755 305 FSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALT 351 (1079)
Q Consensus 305 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 351 (1079)
+++.++++++....+.+..... ..+.++.++..++|.|..+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYNDI-----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcCC-----CHHHHHHHHHHcCCCHHHHH
Confidence 9999999999988887765311 12347788999999886544
No 59
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.35 E-value=6e-06 Score=85.61 Aligned_cols=148 Identities=16% Similarity=0.220 Sum_probs=99.0
Q ss_pred ccccccHHHHH---HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 044755 154 YEAFESRLCAL---KSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEK 230 (1079)
Q Consensus 154 ~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 230 (1079)
..+++|.++.+ .-|.+++..+.++-+.+||++|+||||||+.+....+... ..||..|....-..-.++|+++
T Consensus 137 L~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence 34455655443 2244555677888999999999999999999998876332 5688887765555555666654
Q ss_pred hCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEE--EecChhhh---hhcCCCc
Q 044755 231 LGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLL--TARDRNVL---FRMGSQK 303 (1079)
Q Consensus 231 l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv--TtR~~~v~---~~~~~~~ 303 (1079)
... ...+ .++|.+|++|.|..- .+-+ + .+|.-.+|.-++| ||.++..- .......
T Consensus 213 aq~--------------~~~l-~krkTilFiDEiHRFNksQQD-~--fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~ 274 (554)
T KOG2028|consen 213 AQN--------------EKSL-TKRKTILFIDEIHRFNKSQQD-T--FLPHVENGDITLIGATTENPSFQLNAALLSRCR 274 (554)
T ss_pred HHH--------------HHhh-hcceeEEEeHHhhhhhhhhhh-c--ccceeccCceEEEecccCCCccchhHHHHhccc
Confidence 320 1112 258999999999753 2222 2 3455567776666 66665432 1234567
Q ss_pred eEeCCCCCHHHHHHHHHHHh
Q 044755 304 NFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 304 ~~~l~~L~~~~~~~lf~~~~ 323 (1079)
++.|++|+.++-..++.+..
T Consensus 275 VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 275 VFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred eeEeccCCHHHHHHHHHHHH
Confidence 89999999999999998854
No 60
>PLN03025 replication factor C subunit; Provisional
Probab=98.32 E-value=7.3e-06 Score=90.37 Aligned_cols=181 Identities=13% Similarity=0.081 Sum_probs=107.1
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC-EEEEEEeCCccCHHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFD-LVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
|.....++|.++.++.|..++..++.+.+-++|++|+||||+|+.+++..... .|. .++-++.+...... ..+++++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~-~vr~~i~ 86 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGID-VVRNKIK 86 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHH-HHHHHHH
Confidence 44455678888888888888887777778899999999999999999886422 222 22333333333322 2222222
Q ss_pred HhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEEEecCh-hhhhh-cCCCceE
Q 044755 230 KLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLLTARDR-NVLFR-MGSQKNF 305 (1079)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~~~ 305 (1079)
.+..... ....++.-++++|+++... ....+...+......+++++++... .+... ......+
T Consensus 87 ~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 87 MFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred HHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcc
Confidence 2110000 0012456789999998752 2222322222223456777766543 22111 1123578
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 306 SIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 306 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
++.++++++....+.+.+...... --.+....|++.++|-.
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~-i~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVP-YVPEGLEAIIFTADGDM 194 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCH
Confidence 999999999999999888332211 11356788999998865
No 61
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.31 E-value=1.9e-06 Score=92.31 Aligned_cols=290 Identities=20% Similarity=0.232 Sum_probs=182.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCC-CEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHc
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLF-DLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKK 253 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (1079)
..+.+.++|.|||||||++-.+.. .+ ..| +.+.++...+-.+...+.-.....++..... .......+..+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~--g~~~~~~~~~~~~- 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP--GDSAVDTLVRRIG- 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhccccccc--chHHHHHHHHHHh-
Confidence 357899999999999999999998 43 335 6788888888888888888888888875542 1222334455554
Q ss_pred CCcEEEEEeCCCCcc-ccccccCCCCCCCCCcEEEEEecChhhhhhcCCCceEeCCCCCHH-HHHHHHHHHhc----CCC
Q 044755 254 EEKILIILDNIWKCV-DLEAVGIPFGDDHKGCKLLLTARDRNVLFRMGSQKNFSIDILNEE-EAWRLFKLMAD----DHV 327 (1079)
Q Consensus 254 ~~~~LlvlDdv~~~~-~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~----~~~ 327 (1079)
++|.++|+||..+.. .-..+...+..+...-.|+.|+|.... ........+.+|+.. ++.++|...+. .-.
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 699999999987652 112222223334445568888886532 344556777777754 78899887772 111
Q ss_pred CChhhHHHHHHHHHHcCCCchHHHHHHHHHhcCChhHHHHHH----HHhcCCCcCCCCCCchhhhhhHHHhhccCChHHH
Q 044755 328 ENRELQSTATEVAQACKGLPIALTTIARALRNKSVPEWKSAL----QELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQL 403 (1079)
Q Consensus 328 ~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~----~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~l 403 (1079)
-.........+|.++..|.|++|...++..+.....+-...+ ..+... .....-......+.+.+||.-|... -
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw-e 241 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW-E 241 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH-H
Confidence 223345678999999999999999999998877443322222 222221 1111111334678999999999987 5
Q ss_pred HHHHHHhcccCCCcchhHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHhhccccccC--CCCcEeehHHHHHHHHHHh
Q 044755 404 KKFFMLCSLLGNSICTSYLFQCCMGLGILQKANKLEDARNKLYALVHELRDSCLLLEGD--SNQQLSMHDVIRDVAISIA 481 (1079)
Q Consensus 404 k~cf~~~s~fp~~~~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~--~~~~~~~Hdlv~~~~~~~~ 481 (1079)
+.-|.-++.|.-.|.-. ...|.+-|-... ........-+..+++.+++...+ ..-.|+.-+-+|.|+..+-
T Consensus 242 ~~~~~rLa~~~g~f~~~--l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 242 RALFGRLAVFVGGFDLG--LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred HHHhcchhhhhhhhccc--HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 88888999999777654 333433332210 00111111234466677664322 2224666677777776654
Q ss_pred h
Q 044755 482 C 482 (1079)
Q Consensus 482 ~ 482 (1079)
.
T Consensus 315 ~ 315 (414)
T COG3903 315 H 315 (414)
T ss_pred H
Confidence 3
No 62
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.5e-07 Score=99.90 Aligned_cols=188 Identities=22% Similarity=0.186 Sum_probs=116.5
Q ss_pred ccceeEEEecCCCCCCCCC---ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCcc--cccccc
Q 044755 504 LKECYAISLRGCSIHELPE---GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSS--IDLLVN 578 (1079)
Q Consensus 504 ~~~~~~l~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~--i~~L~~ 578 (1079)
.++++.+++.++.+...+. .-.|+++|.|+++.+-... .+.-..+...+++|+.|+++.|.+...-++ -..+.+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n-w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN-WFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh-HHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 5678888888888876663 3368889998888753221 111235567888888888888876543332 246788
Q ss_pred ccEEeccccccCC--c-ccccCCcccceeeccCCc-CcccChhhccCCcccEEcccccccccccCh-hhhhcccccceee
Q 044755 579 LQTLCLVECMLDD--I-AIIGKLKNLEILSFWGSV-IVMLPEELGHLTKLRQLDLSNCFKLKVIAP-NVISRLVRLEELY 653 (1079)
Q Consensus 579 L~~L~L~~~~l~~--~-~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~-~~l~~L~~L~~L~ 653 (1079)
|+.|.|++|.++. . ..+-.+++|+.|++.+|. +-.-......+..|+.|+|++| .+...+. ...+.++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN-NLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC-cccccccccccccccchhhhh
Confidence 8888888888775 2 344567888888888873 2222223345677888888887 4444441 2256777788887
Q ss_pred cccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCC
Q 044755 654 MSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLP 698 (1079)
Q Consensus 654 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 698 (1079)
++.|.+..-. .+ ..........+++|+.|.+..|.+..++
T Consensus 278 ls~tgi~si~-~~----d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 278 LSSTGIASIA-EP----DVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred ccccCcchhc-CC----CccchhhhcccccceeeecccCcccccc
Confidence 7776553100 00 0111222345566777777666654443
No 63
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.29 E-value=6.1e-07 Score=103.06 Aligned_cols=174 Identities=28% Similarity=0.361 Sum_probs=112.9
Q ss_pred ccCCcceEEEecCccccccCccccccc-cccEEeccccccCC-cccccCCcccceeeccCCcCcccChhhccCCcccEEc
Q 044755 551 TGMRKLRVVDFTRMQLLLLPSSIDLLV-NLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLD 628 (1079)
Q Consensus 551 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 628 (1079)
..++.+..|++.++.+.++|..++.+. +|+.|+++++.+.. |..++.+++|+.|++++|.+.++|...+.+++|+.|+
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 445677788888888888877777774 88888888887777 4677788888888888888888877766777888888
Q ss_pred ccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccce
Q 044755 629 LSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLER 708 (1079)
Q Consensus 629 l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~ 708 (1079)
++++ .+..+|.. +..+..|++|.++++... ..+..+.++.++..+.+..+....++..
T Consensus 193 ls~N-~i~~l~~~-~~~~~~L~~l~~~~N~~~------------~~~~~~~~~~~l~~l~l~~n~~~~~~~~-------- 250 (394)
T COG4886 193 LSGN-KISDLPPE-IELLSALEELDLSNNSII------------ELLSSLSNLKNLSGLELSNNKLEDLPES-------- 250 (394)
T ss_pred ccCC-ccccCchh-hhhhhhhhhhhhcCCcce------------ecchhhhhcccccccccCCceeeeccch--------
Confidence 8876 67777664 455666777777766321 2344455555666665555444433222
Q ss_pred eeeeeecCCcccceEeeccccccccccccccccccCCCceeeccCCC
Q 044755 709 FKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNP 755 (1079)
Q Consensus 709 L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 755 (1079)
+..+++++.|.++++....-.. ...+.+|+.|++++..
T Consensus 251 -----~~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 251 -----IGNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSGNS 288 (394)
T ss_pred -----hccccccceecccccccccccc----ccccCccCEEeccCcc
Confidence 2234456666666554332111 2455777777777664
No 64
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.28 E-value=2.4e-06 Score=88.95 Aligned_cols=92 Identities=14% Similarity=0.182 Sum_probs=64.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc--cCHHHHHHHH-----HHHhCCCcccc-chHHHH-H
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT--LDIKKIQQEI-----AEKLGLVLEEE-TGSRRA-S 245 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i-----~~~l~~~~~~~-~~~~~~-~ 245 (1079)
....+.|+|++|+|||||+++++++...+ +|+.++|+.+.+. .++.++++.+ +.+++.+.... .....+ .
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 44689999999999999999999988754 8999999997766 7899999999 33333211100 000111 1
Q ss_pred HHHHHHHcCCcEEEEEeCCCCc
Q 044755 246 RLYERLKKEEKILIILDNIWKC 267 (1079)
Q Consensus 246 ~l~~~l~~~~~~LlvlDdv~~~ 267 (1079)
.......++++.++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 2222223589999999999653
No 65
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.27 E-value=6.2e-06 Score=80.06 Aligned_cols=122 Identities=19% Similarity=0.185 Sum_probs=74.1
Q ss_pred cHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCcccc
Q 044755 159 SRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEE 238 (1079)
Q Consensus 159 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 238 (1079)
|++..+..+...+.....+.+.|+|.+|+|||++++.+++..... -..++++.+............+...
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~-------- 71 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF-------- 71 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh--------
Confidence 678888999888887667889999999999999999999987521 2346677665543322222111100
Q ss_pred chHHHHHHHHHHHHcCCcEEEEEeCCCCc-----cccccccCCCCC---CCCCcEEEEEecChh
Q 044755 239 TGSRRASRLYERLKKEEKILIILDNIWKC-----VDLEAVGIPFGD---DHKGCKLLLTARDRN 294 (1079)
Q Consensus 239 ~~~~~~~~l~~~l~~~~~~LlvlDdv~~~-----~~~~~l~~~l~~---~~~gs~iivTtR~~~ 294 (1079)
............++.++|+||++.. ..+..+...+.. ...+..||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0000111111247789999999863 122222122211 135788988888653
No 66
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.5e-05 Score=90.30 Aligned_cols=178 Identities=14% Similarity=0.125 Sum_probs=110.1
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCE------------------EEE
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDKLFDL------------------VVF 211 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~------------------~~w 211 (1079)
|.....++|.+...+.|..++..+... .+.++|++|+||||+|+.+++.......+.. +.+
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~e 89 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLE 89 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEE
Confidence 334456789999899999888876654 5599999999999999999988753222221 222
Q ss_pred EEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCCCCCCCcE
Q 044755 212 SEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLK----KEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCK 285 (1079)
Q Consensus 212 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ 285 (1079)
++.+....+ +.+..+.+.+. .+++-++|+|+++.. ..++.+...+........
T Consensus 90 l~~~~~~~v---------------------d~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~ 148 (504)
T PRK14963 90 IDAASNNSV---------------------EDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVI 148 (504)
T ss_pred ecccccCCH---------------------HHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEE
Confidence 222211111 11222222221 146678999999865 335555444433334455
Q ss_pred EEEEec-Chhhhhhc-CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHH
Q 044755 286 LLLTAR-DRNVLFRM-GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIAL 350 (1079)
Q Consensus 286 iivTtR-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 350 (1079)
+|++|. ...+.... .....+++.+++.++....+.+.+...... .-.+.+..|++.++|.+--+
T Consensus 149 ~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~-i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 149 FILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE-AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 555554 33332222 234589999999999999999988322111 12456888999999987533
No 67
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.27 E-value=3.6e-06 Score=79.65 Aligned_cols=115 Identities=28% Similarity=0.369 Sum_probs=80.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhc---CCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccc-cchHHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQARED---KLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEE-ETGSRRASRLYERL 251 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~l 251 (1079)
.+++.|+|.+|+|||++++.+.++.... ..-..++|+++....+...+...++.+++..... ....+....+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4689999999999999999999886421 1124577999998889999999999999987665 44455567777777
Q ss_pred HcCCcEEEEEeCCCCc-c--ccccccCCCCCCCCCcEEEEEecC
Q 044755 252 KKEEKILIILDNIWKC-V--DLEAVGIPFGDDHKGCKLLLTARD 292 (1079)
Q Consensus 252 ~~~~~~LlvlDdv~~~-~--~~~~l~~~l~~~~~gs~iivTtR~ 292 (1079)
.+.+..+||+||++.. . .++.+.... + ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 7666679999999765 2 223332221 1 557788887765
No 68
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.3e-05 Score=92.20 Aligned_cols=180 Identities=12% Similarity=0.158 Sum_probs=111.5
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcC------------------------C
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDK------------------------L 205 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------------~ 205 (1079)
+....+++|.+..++.|.+++..+++. .+.++|..|+||||+|+.+.+...... .
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGR 91 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCC
Confidence 344557889999999999999877654 568899999999999999988764311 0
Q ss_pred CCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCCC
Q 044755 206 FDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLK----KEEKILIILDNIWKC--VDLEAVGIPFGD 279 (1079)
Q Consensus 206 F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~ 279 (1079)
|.-+++++.+....+ +.+..+.+.+. .++.-++|+|+++.. ..++.+...+-.
T Consensus 92 hpDviEIdAas~~gV---------------------DdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE 150 (700)
T PRK12323 92 FVDYIEMDAASNRGV---------------------DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE 150 (700)
T ss_pred CCcceEecccccCCH---------------------HHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc
Confidence 111222222221111 22222222221 356679999999875 344444444433
Q ss_pred CCCCcEEEEEec-Chhhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHH
Q 044755 280 DHKGCKLLLTAR-DRNVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTT 352 (1079)
Q Consensus 280 ~~~gs~iivTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 352 (1079)
...++++|++|. ...+... ......+.+..++.++..+.+.+.+...... ...+..+.|++.++|.|.-...
T Consensus 151 PP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~-~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 151 PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA-HEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred CCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 334556555544 4444332 2223579999999999999999887432211 1234568899999998864433
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.5e-05 Score=91.86 Aligned_cols=182 Identities=12% Similarity=0.177 Sum_probs=111.1
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------CCCEEE
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQAREDK-------------------LFDLVV 210 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 210 (1079)
|.....++|.+...+.|..++..++. ..+.++|+.|+||||+|+.+++...... .|--++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE
Confidence 44556788999999999999987664 5778999999999999999988764211 111122
Q ss_pred EEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEE
Q 044755 211 FSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLL 288 (1079)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iiv 288 (1079)
.++.+....+.++ ++++..+. ..-..+++-++|+|+++... ....+...+-....+.++|+
T Consensus 91 EIDAAs~~~VddI-Reli~~~~----------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FIL 153 (702)
T PRK14960 91 EIDAASRTKVEDT-RELLDNVP----------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLF 153 (702)
T ss_pred EecccccCCHHHH-HHHHHHHh----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEE
Confidence 3333222222221 12221111 00012566789999998752 34444333333334567777
Q ss_pred EecCh-hhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHH
Q 044755 289 TARDR-NVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIAL 350 (1079)
Q Consensus 289 TtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 350 (1079)
+|.+. .+... ......+++.+++.++....+.+.+..... ..-.+....|++.++|-+-.+
T Consensus 154 aTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI-~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 154 ATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI-AADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred EECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 77653 22211 233468999999999999999888733221 122456788999999976443
No 70
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.25 E-value=2.8e-06 Score=91.75 Aligned_cols=100 Identities=14% Similarity=0.191 Sum_probs=66.8
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCcc--CHHHHHHHHHHHhCCCccccchHH
Q 044755 166 SVQNALTD-VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTL--DIKKIQQEIAEKLGLVLEEETGSR 242 (1079)
Q Consensus 166 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~ 242 (1079)
++++++.. +.-....|+|++|+||||||+++|+....+ +|+.++||.+.+.. ++.++++++...+-....+.....
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~ 236 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAER 236 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHH
Confidence 34444442 234578899999999999999999998765 89999999998887 788888888632111111111111
Q ss_pred ------HHHHHHHHH-HcCCcEEEEEeCCCC
Q 044755 243 ------RASRLYERL-KKEEKILIILDNIWK 266 (1079)
Q Consensus 243 ------~~~~l~~~l-~~~~~~LlvlDdv~~ 266 (1079)
.+....+++ ..+++++|++|++..
T Consensus 237 ~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 237 HVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 111222222 357999999999965
No 71
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=3.7e-05 Score=88.42 Aligned_cols=177 Identities=12% Similarity=0.196 Sum_probs=110.4
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCC-----------------------
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQAREDKLF----------------------- 206 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----------------------- 206 (1079)
|....+++|.+..+..|..++..++. ..+-++|+.|+||||+|+.+++........
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h 96 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNH 96 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCC
Confidence 44455678999989988887776654 578899999999999999999876432111
Q ss_pred CEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCCCC
Q 044755 207 DLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLK----KEEKILIILDNIWKC--VDLEAVGIPFGDD 280 (1079)
Q Consensus 207 ~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~ 280 (1079)
.-++.++......+.+ +..+.+... .+++-++|+|+++.. ..++.+...+...
T Consensus 97 ~Dv~eidaas~~~vd~---------------------Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep 155 (507)
T PRK06645 97 PDIIEIDAASKTSVDD---------------------IRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP 155 (507)
T ss_pred CcEEEeeccCCCCHHH---------------------HHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc
Confidence 0112222222222222 222222221 256778999999875 3466555444443
Q ss_pred CCCcEEEE-EecChhhhhhc-CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchH
Q 044755 281 HKGCKLLL-TARDRNVLFRM-GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIA 349 (1079)
Q Consensus 281 ~~gs~iiv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 349 (1079)
...+.+|+ ||+.+.+.... .....+++.+++.++....+.+.+...... ...+....|++.++|.+--
T Consensus 156 p~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~-ie~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 156 PPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK-TDIEALRIIAYKSEGSARD 225 (507)
T ss_pred CCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHH
Confidence 44556554 55555554432 234579999999999999999988432211 1235577899999987643
No 72
>PRK08727 hypothetical protein; Validated
Probab=98.24 E-value=1.6e-05 Score=83.08 Aligned_cols=168 Identities=15% Similarity=0.149 Sum_probs=98.7
Q ss_pred cccccHHH-HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 044755 155 EAFESRLC-ALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 155 ~~~~gr~~-~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1079)
..|++... .+..+..+........+.|+|..|+|||+|++.+++....+ ...++|++..+ ....+
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~------ 84 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRL------ 84 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhH------
Confidence 34544332 23333333333334569999999999999999999886533 23566776432 11111
Q ss_pred CccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc---ccccccCCCCC--CCCCcEEEEEecCh---------hhhhhc
Q 044755 234 VLEEETGSRRASRLYERLKKEEKILIILDNIWKCV---DLEAVGIPFGD--DHKGCKLLLTARDR---------NVLFRM 299 (1079)
Q Consensus 234 ~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~~~~l~~~l~~--~~~gs~iivTtR~~---------~v~~~~ 299 (1079)
....+.+. +.-+||+||+.... .|......+.. ...|..||+|++.. +...++
T Consensus 85 -----------~~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl 151 (233)
T PRK08727 85 -----------RDALEALE--GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL 151 (233)
T ss_pred -----------HHHHHHHh--cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHH
Confidence 11222332 44589999997542 23221111111 12356799999853 222234
Q ss_pred CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHH
Q 044755 300 GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIAL 350 (1079)
Q Consensus 300 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 350 (1079)
.....+++++++.++-.+++++++.... -.--+++..-|++.++|-.-++
T Consensus 152 ~~~~~~~l~~~~~e~~~~iL~~~a~~~~-l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 152 AQCIRIGLPVLDDVARAAVLRERAQRRG-LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred hcCceEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHHHH
Confidence 4566899999999999999999873211 1222456788888887654433
No 73
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.23 E-value=9.9e-07 Score=101.35 Aligned_cols=157 Identities=28% Similarity=0.351 Sum_probs=104.2
Q ss_pred CCCcccEEEecCCCCcccccCCcchhccCC-cceEEEecCccccccCccccccccccEEeccccccCC-cccccCCcccc
Q 044755 525 ECLRLEFLHINPKDSFFEINNPCNFFTGMR-KLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLE 602 (1079)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~ 602 (1079)
..+.+..|.+.++... .+ +.. ...++ +|+.|++++|.+..+|..++.+++|+.|+++.|.+.+ +...+.+.+|+
T Consensus 114 ~~~~l~~L~l~~n~i~-~i--~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 114 ELTNLTSLDLDNNNIT-DI--PPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred cccceeEEecCCcccc-cC--ccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 4456666766665432 22 221 23342 7888888888888887777888888888888888777 55555778888
Q ss_pred eeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCC
Q 044755 603 ILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLP 682 (1079)
Q Consensus 603 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 682 (1079)
.|++++|.+..+|..+..+.+|++|.++++. ....+.. +.++.++..|.+.++... ..+..++.++
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~------------~~~~~~~~l~ 255 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE------------DLPESIGNLS 255 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee------------eccchhcccc
Confidence 8888888888888777667778888887763 3333332 667777777776655432 1245566667
Q ss_pred CCcEEEEEeeCCCCCCc
Q 044755 683 RLTTLEVHVKNDNVLPE 699 (1079)
Q Consensus 683 ~L~~L~l~~~~~~~~~~ 699 (1079)
+++.|+++.+.+..++.
T Consensus 256 ~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 256 NLETLDLSNNQISSISS 272 (394)
T ss_pred ccceecccccccccccc
Confidence 77777777777776665
No 74
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.22 E-value=3.4e-05 Score=85.84 Aligned_cols=183 Identities=11% Similarity=0.102 Sum_probs=107.5
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCE-EEEEEeCCccCHHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDL-VVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
|.....++|+++.++.+..++.....+.+.++|..|+||||+|+.+++...... +.. .+-++.+....... ..+.+.
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~-~~~~i~ 90 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGIDV-IRNKIK 90 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchHH-HHHHHH
Confidence 344456889999999999999877777789999999999999999998864322 211 12222222222221 111111
Q ss_pred HhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEEEecCh-hhhhh-cCCCceE
Q 044755 230 KLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLLTARDR-NVLFR-MGSQKNF 305 (1079)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~~~ 305 (1079)
.+....+ .....+-++++|+++... ....+...+......+++|+++... .+... ......+
T Consensus 91 ~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 91 EFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred HHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 1110000 001245689999987642 2233332232223356777776432 11111 1223468
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHH
Q 044755 306 SIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIAL 350 (1079)
Q Consensus 306 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 350 (1079)
++.+++.++....+.+.+..... .-..+.+..+++.++|-+--+
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~-~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGI-EITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 99999999999999988832211 112456888999999987553
No 75
>PTZ00202 tuzin; Provisional
Probab=98.21 E-value=6.8e-05 Score=81.41 Aligned_cols=164 Identities=15% Similarity=0.183 Sum_probs=101.3
Q ss_pred ccCCccccccHHHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHH
Q 044755 150 SRKGYEAFESRLCALKSVQNALTD---VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQE 226 (1079)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 226 (1079)
.|.+...|+||+.++..+...|.+ +..+++.|.|++|+|||||++.+..... ...++.... +..++++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHHH
Confidence 456667899999999999998863 2346899999999999999999996543 123333333 67999999
Q ss_pred HHHHhCCCccccchHHHHHHHHHHHH----c-CCcEEEEEeCCCCccccccc---cCCCCCCCCCcEEEEEecChhhhhh
Q 044755 227 IAEKLGLVLEEETGSRRASRLYERLK----K-EEKILIILDNIWKCVDLEAV---GIPFGDDHKGCKLLLTARDRNVLFR 298 (1079)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~----~-~~~~LlvlDdv~~~~~~~~l---~~~l~~~~~gs~iivTtR~~~v~~~ 298 (1079)
++.+||.+.. ....+....+.+.+. . +++.+||+-=-+. ..+..+ ...+.....-|.|++----+..-..
T Consensus 329 LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg-~~l~rvyne~v~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 329 VVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKLREG-SSLQRVYNEVVALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCC-CcHHHHHHHHHHHHccchhheeeeeehHhhcchh
Confidence 9999997432 222333344444332 2 6677777642211 111111 0112223345666664433322111
Q ss_pred ---cCCCceEeCCCCCHHHHHHHHHHHh
Q 044755 299 ---MGSQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 299 ---~~~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
...-..|-+.+++.++|..+-++..
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1223468899999999998877654
No 76
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.20 E-value=2.7e-05 Score=92.75 Aligned_cols=203 Identities=15% Similarity=0.127 Sum_probs=116.0
Q ss_pred CCccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC---EEEEEEeCC---ccCHHHHHH
Q 044755 152 KGYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFD---LVVFSEVSQ---TLDIKKIQQ 225 (1079)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~~~~---~~~~~~~~~ 225 (1079)
.....++|++..+..+.+.+.......+.|+|++|+||||+|+.+++..+....+. ..-|+.+.. ..+...+..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 34446789988888888887766667899999999999999999988765433331 123443321 112222211
Q ss_pred HH---------------HHHhCCCc----------------c--ccchHHHHHHHHHHHHcCCcEEEEEeCCCCc--ccc
Q 044755 226 EI---------------AEKLGLVL----------------E--EETGSRRASRLYERLKKEEKILIILDNIWKC--VDL 270 (1079)
Q Consensus 226 ~i---------------~~~l~~~~----------------~--~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~ 270 (1079)
.+ +...+... + +.-+......+.+.+. ++++.++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcccc
Confidence 11 11112110 0 0112223455666665 57888887766653 457
Q ss_pred ccccCCCCCCCCCcEEEE--EecChhhhh-hc-CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCC
Q 044755 271 EAVGIPFGDDHKGCKLLL--TARDRNVLF-RM-GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGL 346 (1079)
Q Consensus 271 ~~l~~~l~~~~~gs~iiv--TtR~~~v~~-~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 346 (1079)
+.+...+..+.+..-|++ ||++..... .+ .....+.+.+++.++.+.++.+.+...... --.++.+.|++.+..-
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls~eal~~L~~ys~~g 388 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LAAGVEELIARYTIEG 388 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHCCCcH
Confidence 777666655554444555 566443211 11 122467899999999999999987432111 1134455555555444
Q ss_pred chHHHHHHHH
Q 044755 347 PIALTTIARA 356 (1079)
Q Consensus 347 Plai~~~~~~ 356 (1079)
+-|+..++..
T Consensus 389 Rraln~L~~~ 398 (615)
T TIGR02903 389 RKAVNILADV 398 (615)
T ss_pred HHHHHHHHHH
Confidence 5565555443
No 77
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.4e-05 Score=89.66 Aligned_cols=194 Identities=13% Similarity=0.121 Sum_probs=111.0
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
|.....++|.+..+..|..++..+++. .+.++|+.|+||||+|+.+++......... ...+....+-..+...+..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC~~i~~g~~~ 90 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSCLEITKGISS 90 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHHHHHHccCCc
Confidence 445567889999999999999877654 578999999999999999998764321111 0011111111111111100
Q ss_pred HhC-CCccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEE-EecChhhhhh-cC
Q 044755 230 KLG-LVLEEETGSRRASRLYERLK----KEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLL-TARDRNVLFR-MG 300 (1079)
Q Consensus 230 ~l~-~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~~-~~ 300 (1079)
.+. .........+.+..+.+.+. .++.-++|+|+++.. ..++.+...+-.......+|+ ||....+... ..
T Consensus 91 dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 91 DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS 170 (484)
T ss_pred cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh
Confidence 000 00000011122222333222 356679999999875 345555444433333455444 4444444332 22
Q ss_pred CCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCch
Q 044755 301 SQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPI 348 (1079)
Q Consensus 301 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 348 (1079)
....|.+.+++.++..+.+.+.+..... .-..+....|++.++|-+-
T Consensus 171 RCq~~~f~~ls~~~i~~~L~~i~~~Egi-~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 171 RCQDFIFKKVPLSVLQDYSEKLCKIENV-QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred hhheeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCChHH
Confidence 3357999999999999999888733211 1224568889999999774
No 78
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.19 E-value=1.9e-06 Score=68.60 Aligned_cols=56 Identities=29% Similarity=0.336 Sum_probs=29.9
Q ss_pred cceEEEecCccccccCc-cccccccccEEeccccccCC--cccccCCcccceeeccCCc
Q 044755 555 KLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSV 610 (1079)
Q Consensus 555 ~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~ 610 (1079)
+|++|++++|.+..+|. .+..+++|++|++++|.++. +..+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45556666665555543 34555555555555555544 2445555555555555543
No 79
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.18 E-value=4.6e-05 Score=77.10 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=94.5
Q ss_pred HHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhc--------------------CCCCEEEEEEeCCccCHHHHH
Q 044755 166 SVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQARED--------------------KLFDLVVFSEVSQTLDIKKIQ 224 (1079)
Q Consensus 166 ~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~~~~~~~~~~~~ 224 (1079)
.+.+.+..+++ ..+.++|+.|+||||+|+.+.+..-.. .+.|..+..........+ ..
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~-~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVD-QV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHH-HH
Confidence 45555555555 578899999999999999998886432 222322221111122221 22
Q ss_pred HHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEEEecCh-hhhhh-cC
Q 044755 225 QEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLLTARDR-NVLFR-MG 300 (1079)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~ 300 (1079)
+++.+.+.... ..+.+-++|+||++... ..+.+...+......+.+|++|++. .+... ..
T Consensus 82 ~~i~~~~~~~~----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s 145 (188)
T TIGR00678 82 RELVEFLSRTP----------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS 145 (188)
T ss_pred HHHHHHHccCc----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh
Confidence 22222221100 01466689999987642 3444444443333456677766644 22222 12
Q ss_pred CCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchH
Q 044755 301 SQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIA 349 (1079)
Q Consensus 301 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 349 (1079)
....+++.+++.++..+.+.+. + . ..+.+..|++.++|.|..
T Consensus 146 r~~~~~~~~~~~~~~~~~l~~~-g--i----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 146 RCQVLPFPPLSEEALLQWLIRQ-G--I----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred hcEEeeCCCCCHHHHHHHHHHc-C--C----CHHHHHHHHHHcCCCccc
Confidence 3458999999999998888877 2 1 145688999999998853
No 80
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.16 E-value=1.3e-05 Score=96.36 Aligned_cols=171 Identities=19% Similarity=0.278 Sum_probs=100.1
Q ss_pred cCCccccccHHHHHH---HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHH
Q 044755 151 RKGYEAFESRLCALK---SVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEI 227 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 227 (1079)
|....+|+|++..+. .+..++..+....+.++|++|+||||+|+.+++... .+| +.++... ..+.++ +++
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f---~~lna~~-~~i~di-r~~ 96 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHF---SSLNAVL-AGVKDL-RAE 96 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Ccc---eeehhhh-hhhHHH-HHH
Confidence 445567889888764 566666777777889999999999999999998764 334 1122111 011111 111
Q ss_pred HHHhCCCccccchHHHHHHHHHHHH-cCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEEE--ecChh--hhhh-c
Q 044755 228 AEKLGLVLEEETGSRRASRLYERLK-KEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLT--ARDRN--VLFR-M 299 (1079)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivT--tR~~~--v~~~-~ 299 (1079)
+ ......+. .+++.+||+||++.. .+++.+...+ ..|+.++++ |.+.. +... .
T Consensus 97 i----------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 97 V----------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred H----------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhh
Confidence 1 11111111 146789999999764 3344443322 235555553 33321 2111 1
Q ss_pred CCCceEeCCCCCHHHHHHHHHHHhcC------CCCChhhHHHHHHHHHHcCCCc
Q 044755 300 GSQKNFSIDILNEEEAWRLFKLMADD------HVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 300 ~~~~~~~l~~L~~~~~~~lf~~~~~~------~~~~~~~~~~~~~i~~~~~glP 347 (1079)
.....+.+++++.++...++.+.+.. .....-..+....|++.+.|.-
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 22457999999999999999887731 1111223456788888888753
No 81
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=4.9e-05 Score=87.96 Aligned_cols=187 Identities=15% Similarity=0.182 Sum_probs=111.8
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------CCCEEE
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQAREDK-------------------LFDLVV 210 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 210 (1079)
|.....++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++...... .|.-.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 34555788999999999999886654 4577899999999999999998653211 122233
Q ss_pred EEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEE
Q 044755 211 FSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLL 288 (1079)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv 288 (1079)
++.......+.++ ++++..+. ..-..+++-++|+|+++.. ..++.+...+-.....+.+|+
T Consensus 92 eidaas~~gvd~i-r~ii~~~~----------------~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL 154 (546)
T PRK14957 92 EIDAASRTGVEET-KEILDNIQ----------------YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFIL 154 (546)
T ss_pred EeecccccCHHHH-HHHHHHHH----------------hhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEE
Confidence 3333222222221 22222111 0111256679999999764 334444444433334555554
Q ss_pred -EecChhhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc-hHHHHHHH
Q 044755 289 -TARDRNVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP-IALTTIAR 355 (1079)
Q Consensus 289 -TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~ 355 (1079)
||....+... ......+++.+++.++....+.+.+..... ....+....|++.++|-+ -|+..+-.
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5444434322 233468999999999998888887632211 222455778999999955 45544433
No 82
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.14 E-value=2.5e-05 Score=81.73 Aligned_cols=161 Identities=16% Similarity=0.137 Sum_probs=98.7
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHH
Q 044755 163 ALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSR 242 (1079)
Q Consensus 163 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 242 (1079)
....+..+......+.+.|+|+.|+|||+|++.+++..... -..+.|+++.....
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~----------------------- 86 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW----------------------- 86 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh-----------------------
Confidence 34455555444455689999999999999999999876532 23566776643110
Q ss_pred HHHHHHHHHHcCCcEEEEEeCCCCc---ccccc----ccCCCCCCCCCcEEEEEecCh---------hhhhhcCCCceEe
Q 044755 243 RASRLYERLKKEEKILIILDNIWKC---VDLEA----VGIPFGDDHKGCKLLLTARDR---------NVLFRMGSQKNFS 306 (1079)
Q Consensus 243 ~~~~l~~~l~~~~~~LlvlDdv~~~---~~~~~----l~~~l~~~~~gs~iivTtR~~---------~v~~~~~~~~~~~ 306 (1079)
....+.+.+. +--+|++||+... ..|+. +...... ..+.++|+||+.. +...++....+++
T Consensus 87 ~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~ 163 (235)
T PRK08084 87 FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYK 163 (235)
T ss_pred hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccHHHHHHHhCCceee
Confidence 0011122222 1237889999764 23432 1112111 1124799999855 2333456678999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHH
Q 044755 307 IDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTT 352 (1079)
Q Consensus 307 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 352 (1079)
++++++++-.+++.+++.... -.--+++..-|++.+.|-.-++..
T Consensus 164 l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 164 LQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred ecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHH
Confidence 999999999999988773221 122356788888888876544433
No 83
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.13 E-value=9e-05 Score=83.81 Aligned_cols=183 Identities=13% Similarity=0.184 Sum_probs=109.9
Q ss_pred CCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhc--------------------CCCCEEE
Q 044755 152 KGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQARED--------------------KLFDLVV 210 (1079)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~ 210 (1079)
.....++|.+..++.+.+++..++.+ .+-++|++|+||||+|+.+.+..... .+++. +
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-I 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-E
Confidence 34456789999999999999866544 67889999999999999998875321 12332 3
Q ss_pred EEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEE
Q 044755 211 FSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLL 288 (1079)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv 288 (1079)
+++.+......+ .+++...+... .. .+++-++|+|+++.. .....+...+......+.+|+
T Consensus 90 ~~~~~~~~~~~~-~~~l~~~~~~~---------------p~-~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 90 EIDAASNNGVDD-IREILDNVKYA---------------PS-SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred EeeccccCCHHH-HHHHHHHHhcC---------------cc-cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 333322112111 22222222110 00 135558889998664 234444333333334566666
Q ss_pred EecChh-hhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 044755 289 TARDRN-VLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTI 353 (1079)
Q Consensus 289 TtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 353 (1079)
+|.+.. +... ......+++.++++++...++.+++..... .--.+.+..|++.++|-|..+...
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHH
Confidence 665443 2222 223457899999999999999988732211 112466888999999988655443
No 84
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=8.2e-05 Score=82.01 Aligned_cols=197 Identities=13% Similarity=0.079 Sum_probs=113.8
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcCC--CCEEEEEEeCCccCHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDKL--FDLVVFSEVSQTLDIKKIQQEI 227 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~~~~~i 227 (1079)
|.....++|.++....+...+..++.. .+.|+|..|+||||+|..+.+..-.... +.... ...........+.+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHHH
Confidence 445567889999999999999877644 6889999999999999999988643110 11110 01111111123333
Q ss_pred HHHhC-------CCccc-------cchHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEE-
Q 044755 228 AEKLG-------LVLEE-------ETGSRRASRLYERLK----KEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKL- 286 (1079)
Q Consensus 228 ~~~l~-------~~~~~-------~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~i- 286 (1079)
...-. .+.+. ....+.+..+.+.+. .+++-++|+|+++... ..+.+...+.....+..+
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 22211 00000 111233444455543 3567799999998752 223332222222234444
Q ss_pred EEEecChhhhhhc-CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 044755 287 LLTARDRNVLFRM-GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTI 353 (1079)
Q Consensus 287 ivTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 353 (1079)
++|++...+.... .....+.+.+++.++..+++.+...... ...+.+..|++.++|.|.....+
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 4444443333222 2235899999999999999988542211 12345778999999999865543
No 85
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=7.7e-06 Score=89.49 Aligned_cols=16 Identities=38% Similarity=0.798 Sum_probs=7.5
Q ss_pred CcceEEeecCCCCCcc
Q 044755 802 ELKTIRVELCDQLSNI 817 (1079)
Q Consensus 802 ~L~~L~l~~c~~l~~l 817 (1079)
+|+.|.+++|+.++.+
T Consensus 73 sLtsL~Lsnc~nLtsL 88 (426)
T PRK15386 73 ELTEITIENCNNLTTL 88 (426)
T ss_pred CCcEEEccCCCCcccC
Confidence 3444444444444444
No 86
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=8.7e-05 Score=82.96 Aligned_cols=170 Identities=11% Similarity=0.079 Sum_probs=102.9
Q ss_pred cccccHHHHHHHHHHHhcCCC----------ceEEEEEcCCCCcHHHHHHHHHHHhhhc-------------------CC
Q 044755 155 EAFESRLCALKSVQNALTDVN----------VSIVGVYGMGGIGKTTLVKEVARQARED-------------------KL 205 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~ 205 (1079)
..++|.+..++.|..++..+. ..-+-++|+.|+|||++|+.+++..-.. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 357798998999999887543 4567899999999999999998764321 12
Q ss_pred CCEEEEEEe-CCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCC
Q 044755 206 FDLVVFSEV-SQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLK----KEEKILIILDNIWKCV--DLEAVGIPFG 278 (1079)
Q Consensus 206 F~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~ 278 (1079)
.|.. ++.. +....+.+ +..+.+... .+++-++|+|+++... ....+...+-
T Consensus 85 pD~~-~i~~~~~~i~i~~---------------------iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE 142 (394)
T PRK07940 85 PDVR-VVAPEGLSIGVDE---------------------VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVE 142 (394)
T ss_pred CCEE-EeccccccCCHHH---------------------HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh
Confidence 2222 2211 11111221 222222221 2455688889998752 2233333333
Q ss_pred CCCCCcEEEEEecCh-hhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHH
Q 044755 279 DDHKGCKLLLTARDR-NVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTT 352 (1079)
Q Consensus 279 ~~~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 352 (1079)
....+..+|++|.+. .+... ......+.+.+++.++....+.+..+. + .+.+..+++.++|.|.....
T Consensus 143 ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---~---~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 143 EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---D---PETARRAARASQGHIGRARR 212 (394)
T ss_pred cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---C---HHHHHHHHHHcCCCHHHHHH
Confidence 333455566655553 44333 223468999999999999888754321 1 34578899999999875433
No 87
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.11 E-value=9.2e-06 Score=82.28 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=43.3
Q ss_pred cccHHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc-----cCHHHHHHHHH
Q 044755 157 FESRLCALKSVQNALT---DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT-----LDIKKIQQEIA 228 (1079)
Q Consensus 157 ~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~~~~~~i~ 228 (1079)
|+||+++++++.+.+. ....+.+.|+|.+|+|||+|+++++........+ .+.+.+... .....++++++
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDSERNPYSPFRSALRQLI 79 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETTTS-HHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEeccccchhhHHHHHHHHHH
Confidence 7899999999999993 4567899999999999999999999988765333 333333333 11355555555
Q ss_pred HH
Q 044755 229 EK 230 (1079)
Q Consensus 229 ~~ 230 (1079)
.+
T Consensus 80 ~~ 81 (185)
T PF13191_consen 80 DQ 81 (185)
T ss_dssp --
T ss_pred HH
Confidence 44
No 88
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=3.7e-05 Score=90.27 Aligned_cols=194 Identities=13% Similarity=0.129 Sum_probs=109.2
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
|.....++|.+..++.|...+..+++. .+-++|..|+||||+|+.+++.......+. ...+..-...+.|..
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQ 84 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHc
Confidence 345567889999999999988877654 467899999999999999988764321110 000011111111111
Q ss_pred HhCC-----CccccchHHHHHHHHHHH----HcCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEEEec-Chhhhh
Q 044755 230 KLGL-----VLEEETGSRRASRLYERL----KKEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLTAR-DRNVLF 297 (1079)
Q Consensus 230 ~l~~-----~~~~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~ 297 (1079)
.-.. ........+....+.+.+ ..+++-++|+|+++.. ...+.+...+-......++|++|. ...+..
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 0000 000001111122222222 1356779999999875 234444333322233455555444 444432
Q ss_pred h-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHH
Q 044755 298 R-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTT 352 (1079)
Q Consensus 298 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 352 (1079)
. ......+.+.+++.++....+.+.+..... ....+....|++.++|.+--+..
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i-~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQI-PFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2 223468999999999999999887732111 12245577899999997754333
No 89
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=8.2e-05 Score=85.30 Aligned_cols=189 Identities=16% Similarity=0.184 Sum_probs=110.7
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcCC-------------------CCEEE
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQAREDKL-------------------FDLVV 210 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 210 (1079)
|.....++|.+.....|..++..++. ..+.++|++|+||||+|+.+++....... +..++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 34455788998888888888877766 45789999999999999999887542111 11122
Q ss_pred EEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEE
Q 044755 211 FSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLL 288 (1079)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv 288 (1079)
.++.+....+.++ +++...... .. ..+++-++|+|+++.. ...+.+...+........+|+
T Consensus 90 el~aa~~~gid~i-R~i~~~~~~---------------~p-~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 90 ELDAASNRGIDEI-RKIRDAVGY---------------RP-MEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred EEeCcccCCHHHH-HHHHHHHhh---------------Ch-hcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3333322222222 222222110 00 1246679999999764 233444333333223344444
Q ss_pred EecC-hhhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC-CchHHHHHHHHH
Q 044755 289 TARD-RNVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKG-LPIALTTIARAL 357 (1079)
Q Consensus 289 TtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~~~~~l 357 (1079)
+|.+ ..+... ......+++.+++.++....+.+.+..... .--.++...|++.++| ++.|+..+-.+.
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4433 333332 233458999999999999999888732111 1124567788887754 567776665543
No 90
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.09 E-value=0.00014 Score=78.94 Aligned_cols=205 Identities=16% Similarity=0.167 Sum_probs=127.2
Q ss_pred CccccccHHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHH
Q 044755 153 GYEAFESRLCALKSVQNALT----DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIA 228 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 228 (1079)
.....+||+.+++.+.+|+. ....+-+-|.|-+|.|||.+...++.+......=-+++++++..-.....++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 44567899999999999987 24567889999999999999999998875422223568888887678888888888
Q ss_pred HHhCCCccc-cchHHHHHHHHHHHHcCC-cEEEEEeCCCCcc--ccccccCCCCC-CCCCcEEEEEecCh--hhhh----
Q 044755 229 EKLGLVLEE-ETGSRRASRLYERLKKEE-KILIILDNIWKCV--DLEAVGIPFGD-DHKGCKLLLTARDR--NVLF---- 297 (1079)
Q Consensus 229 ~~l~~~~~~-~~~~~~~~~l~~~l~~~~-~~LlvlDdv~~~~--~~~~l~~~l~~-~~~gs~iivTtR~~--~v~~---- 297 (1079)
..+...... ....+....+..+..+.+ .+|+|+|.++... .-..+...|.+ .-.++|+|+.---. +..+
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 877221111 112334455555665544 7899999987642 11122222211 22455655432211 1111
Q ss_pred hc-----CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc----CCCchHHHHHHHHH
Q 044755 298 RM-----GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQAC----KGLPIALTTIARAL 357 (1079)
Q Consensus 298 ~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~----~glPlai~~~~~~l 357 (1079)
.. .....+...|.+.++-.+++.++.............++-+|+|+ |.+--|+.+.-+.+
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 11 22357889999999999999999854333333333444455555 44555655554443
No 91
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=3.7e-05 Score=89.78 Aligned_cols=182 Identities=15% Similarity=0.179 Sum_probs=107.8
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcCC-------------------CCEEE
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDKL-------------------FDLVV 210 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 210 (1079)
|.....++|.+..++.|..++..+++. .+.++|..|+||||+|+.+.+....... |--++
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE
Confidence 445567889999999999999876654 6789999999999999999886532211 11112
Q ss_pred EEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc--cccccCCCCCCCCCcEEEE
Q 044755 211 FSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD--LEAVGIPFGDDHKGCKLLL 288 (1079)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--~~~l~~~l~~~~~gs~iiv 288 (1079)
.++.+....+. .+++++..... .- ..+++-++|+|++..... ...+...+-.....+++|+
T Consensus 92 EidaAs~~gVd-~IRelle~a~~---------------~P-~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fIL 154 (709)
T PRK08691 92 EIDAASNTGID-NIREVLENAQY---------------AP-TAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (709)
T ss_pred EEeccccCCHH-HHHHHHHHHHh---------------hh-hhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEE
Confidence 33322222221 11222211100 00 124667899999976532 3333333322234566776
Q ss_pred EecCh-hhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHH
Q 044755 289 TARDR-NVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIAL 350 (1079)
Q Consensus 289 TtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 350 (1079)
+|.+. .+... ......+.+.+++.++....+.+.+..... ....+....|++.++|.+.-+
T Consensus 155 aTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi-~id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 155 ATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI-AYEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred EeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHhCCCHHHH
Confidence 66543 22211 222346888999999999999988833221 112456888999999877433
No 92
>PLN03150 hypothetical protein; Provisional
Probab=98.09 E-value=5.1e-06 Score=99.91 Aligned_cols=103 Identities=21% Similarity=0.316 Sum_probs=77.8
Q ss_pred cceEEEecCcccc-ccCccccccccccEEeccccccCC--cccccCCcccceeeccCCcCc-ccChhhccCCcccEEccc
Q 044755 555 KLRVVDFTRMQLL-LLPSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIV-MLPEELGHLTKLRQLDLS 630 (1079)
Q Consensus 555 ~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~ 630 (1079)
.++.|+|+++.+. .+|..++.+++|++|+|++|.+.. |..++.+.+|++|+|++|.+. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778888888887 578888888888888888888875 677888888888888888776 578888888888888888
Q ss_pred ccccccccChhhhhc-ccccceeeccccc
Q 044755 631 NCFKLKVIAPNVISR-LVRLEELYMSNCF 658 (1079)
Q Consensus 631 ~~~~l~~~~~~~l~~-L~~L~~L~l~~~~ 658 (1079)
+|.-...+|.. ++. +.++..+++.+|.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCc
Confidence 87433455554 444 3455666666553
No 93
>PRK09087 hypothetical protein; Validated
Probab=98.09 E-value=4.8e-05 Score=78.65 Aligned_cols=139 Identities=15% Similarity=0.086 Sum_probs=87.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKE 254 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1079)
..+.+.|+|..|+|||+|++.+++.... .|++.. .+..++.. .+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~~~--------------------~~~-- 87 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDAAN--------------------AAA-- 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHHHH--------------------hhh--
Confidence 3467999999999999999998876421 233332 11111111 111
Q ss_pred CcEEEEEeCCCCcc----ccccccCCCCCCCCCcEEEEEecC---------hhhhhhcCCCceEeCCCCCHHHHHHHHHH
Q 044755 255 EKILIILDNIWKCV----DLEAVGIPFGDDHKGCKLLLTARD---------RNVLFRMGSQKNFSIDILNEEEAWRLFKL 321 (1079)
Q Consensus 255 ~~~LlvlDdv~~~~----~~~~l~~~l~~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 321 (1079)
.-+|++||+.... .+-.+...+ ...|..||+|++. ++...++....++++++++.++-.+++++
T Consensus 88 -~~~l~iDDi~~~~~~~~~lf~l~n~~--~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 88 -EGPVLIEDIDAGGFDETGLFHLINSV--RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred -cCeEEEECCCCCCCCHHHHHHHHHHH--HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 1278889996531 111221111 1236779998874 23344456778999999999999999999
Q ss_pred HhcCCCCChhhHHHHHHHHHHcCCCchHHHH
Q 044755 322 MADDHVENRELQSTATEVAQACKGLPIALTT 352 (1079)
Q Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 352 (1079)
++.... -.--+++..-|++.+.|..-++..
T Consensus 165 ~~~~~~-~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 165 LFADRQ-LYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHcC-CCCCHHHHHHHHHHhhhhHHHHHH
Confidence 984321 122256788888888877666554
No 94
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=8.1e-05 Score=84.83 Aligned_cols=181 Identities=12% Similarity=0.152 Sum_probs=111.0
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhc-------------------CCCCEEE
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQARED-------------------KLFDLVV 210 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~ 210 (1079)
|....+++|.+...+.|.+++..+++. .+-++|+.|+||||+|+.+++..... ..+.-++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 345567889999999998888877665 78899999999999999998753211 1111234
Q ss_pred EEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEE
Q 044755 211 FSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLL 288 (1079)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iiv 288 (1079)
.++.+....+.+ .+++....... -. .+++-++|+|++.... ..+.+...+-.....+++|+
T Consensus 89 eidaas~~~vdd-IR~Iie~~~~~---------------P~-~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 89 EIDAASNTSVDD-IKVILENSCYL---------------PI-SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred EEecccCCCHHH-HHHHHHHHHhc---------------cc-cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 444443333333 22232222100 00 1456689999997642 34444333333334566666
Q ss_pred Ee-cChhhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchH
Q 044755 289 TA-RDRNVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIA 349 (1079)
Q Consensus 289 Tt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 349 (1079)
+| ..+.+... ......+++.+++.++....+.+.+..... .--.+....|++.++|-+-.
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi-~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI-EHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHH
Confidence 55 34444332 233467899999999999999988843221 11245577899999987643
No 95
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.08 E-value=6.8e-05 Score=84.41 Aligned_cols=173 Identities=18% Similarity=0.278 Sum_probs=101.5
Q ss_pred CccccccHHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccC
Q 044755 153 GYEAFESRLCALKSVQNALT----D---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLD 219 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 219 (1079)
....+.|++..++++.+.+. . ...+-+.++|++|+|||++|+.+++.... .| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~--~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--TF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC--CE-----Eecch---
Confidence 34467899999988888764 1 12456899999999999999999987642 22 22221
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc----------------ccccccCCCC--CCC
Q 044755 220 IKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV----------------DLEAVGIPFG--DDH 281 (1079)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------------~~~~l~~~l~--~~~ 281 (1079)
.++.... .+ ........+++......+.+|++||++... .+..+...+. ...
T Consensus 190 -~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 -SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred -HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1111111 11 011122333444444577899999987631 0111111111 112
Q ss_pred CCcEEEEEecChhhhhh-----cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 282 KGCKLLLTARDRNVLFR-----MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 282 ~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
.+.+||.||...+.... ...+..+++...+.++..++|+.++......++. ....+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 46778888875432221 1235679999999999999999887432222111 1466777887764
No 96
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=4.9e-05 Score=88.15 Aligned_cols=182 Identities=13% Similarity=0.166 Sum_probs=110.4
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcCC-------------------CCEEE
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDKL-------------------FDLVV 210 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 210 (1079)
|....+++|.+..++.|..++..+++. .+-++|+.|+||||+|+.+++..-.... |.-++
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 445567889999999999999877655 4689999999999999999987643221 11233
Q ss_pred EEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEE
Q 044755 211 FSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLL 288 (1079)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv 288 (1079)
.++.+....++++ +++++.+... -..++.-++|+|+++.. .....+...+......+++|+
T Consensus 92 eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIl 154 (509)
T PRK14958 92 EVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFIL 154 (509)
T ss_pred EEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 4443333333332 2333322110 01256668999999875 334444333333334566666
Q ss_pred EecC-hhhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHH
Q 044755 289 TARD-RNVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIAL 350 (1079)
Q Consensus 289 TtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 350 (1079)
+|.+ ..+... ......+++.+++.++....+.+.+...... ...+....|++.++|-+--+
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~-~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE-FENAALDLLARAANGSVRDA 217 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHH
Confidence 5543 333222 2223568899999999888887777322211 12345778899999876433
No 97
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=0.00014 Score=80.68 Aligned_cols=198 Identities=14% Similarity=0.035 Sum_probs=112.4
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEE---EEeCCccCHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVF---SEVSQTLDIKKIQQE 226 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w---v~~~~~~~~~~~~~~ 226 (1079)
|.....++|.+...+.+.+.+..+++. .+-++|+.|+||+|+|..+++..-.+........ ...-.........+.
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~ 94 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR 94 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHH
Confidence 445567889999999999999877655 5889999999999999999887643221100000 000000000011111
Q ss_pred HHHHhCCCc--------c------ccchHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEE
Q 044755 227 IAEKLGLVL--------E------EETGSRRASRLYERLK----KEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKL 286 (1079)
Q Consensus 227 i~~~l~~~~--------~------~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~i 286 (1079)
+...-.... + .....+.+..+.+.+. .+.+-++|+||++... ....+...+.....++.+
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~ 174 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLF 174 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEE
Confidence 111110000 0 0011223344444433 2567789999998652 233333333333345667
Q ss_pred EEEecChh-hhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 044755 287 LLTARDRN-VLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTI 353 (1079)
Q Consensus 287 ivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 353 (1079)
|++|.+.. +... ......+.+.+++.++..+++.+...... .+....+++.++|.|.....+
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHH
Confidence 77776653 3222 23345899999999999999988653211 122367899999999865443
No 98
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=7.9e-05 Score=86.19 Aligned_cols=197 Identities=14% Similarity=0.175 Sum_probs=108.2
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
|....+++|++..++.+.+++..++++ .+-++|+.|+||||+|+.+++...... |.... ........+.+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~~ 84 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESINT 84 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHHc
Confidence 445567889999999999998765544 688999999999999999998764221 11100 0111111111111
Q ss_pred HhCCCc---c--ccchHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEE-EecChhhhh
Q 044755 230 KLGLVL---E--EETGSRRASRLYERLK----KEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLL-TARDRNVLF 297 (1079)
Q Consensus 230 ~l~~~~---~--~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~ 297 (1079)
...... + .....+....+.+... .+++=++|+|+++.. ..+..+...+-.....+.+|+ |+....+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 100000 0 0001111122222111 123446999998764 344444433333233455554 444444432
Q ss_pred h-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc-hHHHHHHH
Q 044755 298 R-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP-IALTTIAR 355 (1079)
Q Consensus 298 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~ 355 (1079)
. ......+++.+++.++....+.+.+..... .--.+.+..|++.++|-+ .|+..+-.
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKI-KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2 233457899999999999999887732211 111345788999999955 44444443
No 99
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.0001 Score=86.59 Aligned_cols=195 Identities=13% Similarity=0.142 Sum_probs=109.1
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCC--CEEEEEEeCCccCHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQAREDKLF--DLVVFSEVSQTLDIKKIQQEI 227 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i 227 (1079)
|....+++|.+..++.|.+++..+++ ..+-++|..|+||||+|+.+.+..-..... ..... ..+..-...+.|
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i 87 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDI 87 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHH
Confidence 34556788999999999999987765 456899999999999999998765321100 00000 001111111111
Q ss_pred HHHhC-----CCccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEEEe-cChhh
Q 044755 228 AEKLG-----LVLEEETGSRRASRLYERLK----KEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLTA-RDRNV 295 (1079)
Q Consensus 228 ~~~l~-----~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v 295 (1079)
...-. +........+.+..+.+... .++.-++|+|+++.. ..++.+...+.......++|++| ....+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 10000 00000011112222222221 245558899999875 34444444443333455666555 43443
Q ss_pred hhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHH
Q 044755 296 LFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIAL 350 (1079)
Q Consensus 296 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 350 (1079)
... ......+++++++.++....+.+.+...... ...+....|++.++|-+--+
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~-ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP-AEPQALRLLARAARGSMRDA 222 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 322 2335689999999999999999887332211 12456788999999866443
No 100
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.05 E-value=6.1e-06 Score=65.64 Aligned_cols=60 Identities=28% Similarity=0.403 Sum_probs=52.0
Q ss_pred CcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCc-cccccccccEEecccccc
Q 044755 527 LRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECML 589 (1079)
Q Consensus 527 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l 589 (1079)
++|++|.+.++ ....+ |...|.++++|++|++++|.+..+|+ .+..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n-~l~~i--~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEI--PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEE--CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCcc--CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57888999887 44566 88889999999999999999999854 689999999999999874
No 101
>PLN03150 hypothetical protein; Provisional
Probab=98.03 E-value=7.5e-06 Score=98.49 Aligned_cols=107 Identities=19% Similarity=0.286 Sum_probs=88.9
Q ss_pred cccEEEecCCCCcccccCCcchhccCCcceEEEecCcccc-ccCccccccccccEEeccccccCC--cccccCCccccee
Q 044755 528 RLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLL-LLPSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEIL 604 (1079)
Q Consensus 528 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L 604 (1079)
.++.|.+.++.....+ |.. +..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.++. |..+++|++|++|
T Consensus 419 ~v~~L~L~~n~L~g~i--p~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFI--PND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccC--CHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 4777888877665555 544 588999999999999997 689999999999999999999886 7899999999999
Q ss_pred eccCCcCc-ccChhhccC-CcccEEcccccccccc
Q 044755 605 SFWGSVIV-MLPEELGHL-TKLRQLDLSNCFKLKV 637 (1079)
Q Consensus 605 ~l~~~~l~-~lp~~i~~L-~~L~~L~l~~~~~l~~ 637 (1079)
++++|.+. .+|..++.+ .++..+++.+|..+..
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 99999776 789888764 5777888888754443
No 102
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=9.9e-05 Score=83.78 Aligned_cols=198 Identities=13% Similarity=0.143 Sum_probs=110.7
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEE-eCCccCHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSE-VSQTLDIKKIQQEIA 228 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~~~~~~~~~~~~~i~ 228 (1079)
|.....++|.+...+.|..++..++++ .+.++|+.|+||||+|+.+++........+...|.. .......-...+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 344556889999999999998877665 477899999999999999998875322111111110 000011111111111
Q ss_pred HHhCCCc-----cccchHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEEEe-cChhhh
Q 044755 229 EKLGLVL-----EEETGSRRASRLYERLK----KEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLLTA-RDRNVL 296 (1079)
Q Consensus 229 ~~l~~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTt-R~~~v~ 296 (1079)
....... ......+.+..+.+.+. .+.+-++|+|+++... .++.+...+......+.+|++| +...+.
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 1100000 00011122223333332 2456688999987653 4555544444434456665555 434433
Q ss_pred hhc-CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchH
Q 044755 297 FRM-GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIA 349 (1079)
Q Consensus 297 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 349 (1079)
... .....+++.++++++....+.+.+.... ..-..+.+..|++.++|.+--
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~~i~~~al~~l~~~s~g~lr~ 224 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-ISVDADALQLIGRKAQGSMRD 224 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHH
Confidence 321 1234789999999999999888773211 112245688999999997643
No 103
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.97 E-value=3.1e-05 Score=84.38 Aligned_cols=92 Identities=15% Similarity=0.200 Sum_probs=63.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc--cCHHHHHHHHHHHhCCCccccchH------HHHHH
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT--LDIKKIQQEIAEKLGLVLEEETGS------RRASR 246 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~ 246 (1079)
.-..++|+|++|+|||||++.+++....+ +|+..+||.+.+. .++.++++.+...+-...-+.... ..+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 34689999999999999999999988644 8999999999866 789999999854332111111111 11111
Q ss_pred HHHHH-HcCCcEEEEEeCCCCc
Q 044755 247 LYERL-KKEEKILIILDNIWKC 267 (1079)
Q Consensus 247 l~~~l-~~~~~~LlvlDdv~~~ 267 (1079)
..+++ .++++.+|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 22222 3589999999999653
No 104
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=1e-05 Score=88.58 Aligned_cols=62 Identities=24% Similarity=0.462 Sum_probs=45.5
Q ss_pred ccccccceeeecccceeeecCCCCccccccccccceEEEEccCcccccccccchhhhccccceEEEeccccccee
Q 044755 916 VVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCKGLQEI 990 (1079)
Q Consensus 916 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i 990 (1079)
..+..++.|++++|.++.++ .+| .+|++|.|++|.+++.++ ..+ .++|+.|++++|.++..+
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP--~LP-------~sLtsL~Lsnc~nLtsLP--~~L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLP--VLP-------NELTEITIENCNNLTTLP--GSI--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHhcCCCEEEeCCCCCcccC--CCC-------CCCcEEEccCCCCcccCC--chh--hhhhhheEccCccccccc
Confidence 34688899999999888763 222 469999999998887762 222 357899999998777655
No 105
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.93 E-value=4.8e-05 Score=77.93 Aligned_cols=184 Identities=18% Similarity=0.201 Sum_probs=116.2
Q ss_pred ccCCccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEE-EEEeCCccCHHHHHHHH-
Q 044755 150 SRKGYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVV-FSEVSQTLDIKKIQQEI- 227 (1079)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~i- 227 (1079)
.|.....+.|.+..+.-|.+.+.....++...+|++|+|||+-|..++...-..+.|.+++ =.++|......-+-.++
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik 110 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIK 110 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhc
Confidence 3556667889999999999999887789999999999999999999998876656676554 34455443332111111
Q ss_pred -HHHhCCCccccchHHHHHHHHHHHH-cCCc-EEEEEeCCCCc--cccccccCCCCCCCCCcEEEEEecChh-hhhh-cC
Q 044755 228 -AEKLGLVLEEETGSRRASRLYERLK-KEEK-ILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLTARDRN-VLFR-MG 300 (1079)
Q Consensus 228 -~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~-~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~ 300 (1079)
..++..... .... .-.+ -++|||+++.. +.|..+...+-.....++.++.+..-+ +... ..
T Consensus 111 ~fakl~~~~~------------~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 111 NFAKLTVLLK------------RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred CHHHHhhccc------------cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 001100000 0000 1244 36779999875 678887666655445556555444332 2221 12
Q ss_pred CCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCC
Q 044755 301 SQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGL 346 (1079)
Q Consensus 301 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 346 (1079)
....+..++|.+++...-++..+......- ..+..+.|++.++|-
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~-d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDI-DDDALKLIAKISDGD 223 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCc
Confidence 234688999999999999999884322221 245688899999883
No 106
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00015 Score=84.92 Aligned_cols=184 Identities=14% Similarity=0.198 Sum_probs=108.2
Q ss_pred CCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------CCCEEEE
Q 044755 152 KGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDK-------------------LFDLVVF 211 (1079)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 211 (1079)
.....++|.+..++.+..++..++.. .+.++|+.|+||||+|+.+++...... .|.-.++
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 44556789999999999999876655 567999999999999999988763211 1111233
Q ss_pred EEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEEE
Q 044755 212 SEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLLT 289 (1079)
Q Consensus 212 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivT 289 (1079)
+..+....+.+ ++++...+... -..+++-++|+|+++... ..+.+...+......+.+|++
T Consensus 93 i~~~~~~~vd~-ir~l~~~~~~~----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~ 155 (527)
T PRK14969 93 VDAASNTQVDA-MRELLDNAQYA----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA 155 (527)
T ss_pred eeccccCCHHH-HHHHHHHHhhC----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEE
Confidence 33222222211 12222221100 002566799999998753 233333333333345566655
Q ss_pred ecC-hhhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCch-HHHHH
Q 044755 290 ARD-RNVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPI-ALTTI 353 (1079)
Q Consensus 290 tR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 353 (1079)
|.+ +.+... ......+++.+++.++....+.+.+..... ....+..+.|++.++|.+- |+..+
T Consensus 156 t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi-~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 156 TTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI-PFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred eCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 543 333211 112357899999999999988887732211 1224557889999999764 44443
No 107
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.93 E-value=0.00011 Score=77.08 Aligned_cols=163 Identities=15% Similarity=0.161 Sum_probs=94.8
Q ss_pred HHHHHHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchH
Q 044755 163 ALKSVQNALT-DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGS 241 (1079)
Q Consensus 163 ~~~~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 241 (1079)
....+.++.. ......+.|+|..|+|||+||+.+++..... . ...++++...... .+
T Consensus 28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~-~~~~~i~~~~~~~------~~-------------- 85 (227)
T PRK08903 28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-G-RNARYLDAASPLL------AF-------------- 85 (227)
T ss_pred HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-C-CcEEEEehHHhHH------HH--------------
Confidence 3444444443 2345678899999999999999999876422 2 2345555543210 00
Q ss_pred HHHHHHHHHHHcCCcEEEEEeCCCCccccc--cccCCCCC-CCCCc-EEEEEecChhhhh--------hcCCCceEeCCC
Q 044755 242 RRASRLYERLKKEEKILIILDNIWKCVDLE--AVGIPFGD-DHKGC-KLLLTARDRNVLF--------RMGSQKNFSIDI 309 (1079)
Q Consensus 242 ~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~--~l~~~l~~-~~~gs-~iivTtR~~~v~~--------~~~~~~~~~l~~ 309 (1079)
... ...-+||+||++....+. .+...+.. ...|. .||+|++...... .+.....+++.+
T Consensus 86 -------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~p 156 (227)
T PRK08903 86 -------DFD--PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKP 156 (227)
T ss_pred -------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecC
Confidence 011 233478899997643221 12222211 11233 4666666433221 233346899999
Q ss_pred CCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 044755 310 LNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIARAL 357 (1079)
Q Consensus 310 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 357 (1079)
+++++-..++.+.+.... ..--+++.+.+++.+.|.+..+..+...+
T Consensus 157 l~~~~~~~~l~~~~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 157 LSDADKIAALKAAAAERG-LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999887777777552211 11224678888889999998877666554
No 108
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=4.4e-07 Score=91.40 Aligned_cols=38 Identities=11% Similarity=-0.057 Sum_probs=17.4
Q ss_pred CcccceEeeccccccccccccccccccCCCceeeccCC
Q 044755 717 IKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNN 754 (1079)
Q Consensus 717 l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~ 754 (1079)
++.|..|.|++|....+....+..+--++|+.|++++|
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 44555555555554433322221122255666666555
No 109
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=0.00013 Score=83.58 Aligned_cols=165 Identities=12% Similarity=0.142 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCc
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEK 256 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1079)
.-+.|+|..|+|||+|++++++.......-..+++++. .++...+...++.. ......+.+.+. ..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~------~~~~~~~~~~~~--~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKT------HKEIEQFKNEIC--QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHh------hhHHHHHHHHhc--cC
Confidence 46889999999999999999997653222234455544 34556665554321 012233444443 44
Q ss_pred EEEEEeCCCCcc---cc-ccccCCCCC-CCCCcEEEEEecCh---------hhhhhcCCCceEeCCCCCHHHHHHHHHHH
Q 044755 257 ILIILDNIWKCV---DL-EAVGIPFGD-DHKGCKLLLTARDR---------NVLFRMGSQKNFSIDILNEEEAWRLFKLM 322 (1079)
Q Consensus 257 ~LlvlDdv~~~~---~~-~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 322 (1079)
-+||+||+.... .+ +.+...+.. ...|..||+|+... .+..++..+.++++++++.++-.+++.++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 588999997542 12 222111111 12345688886643 22334566778999999999999999999
Q ss_pred hcCCCC-ChhhHHHHHHHHHHcCCCchHHHHHHH
Q 044755 323 ADDHVE-NRELQSTATEVAQACKGLPIALTTIAR 355 (1079)
Q Consensus 323 ~~~~~~-~~~~~~~~~~i~~~~~glPlai~~~~~ 355 (1079)
+..... ..--+++..-|++.++|.|-.+.-+..
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 843211 123367889999999999877655443
No 110
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00018 Score=83.79 Aligned_cols=185 Identities=14% Similarity=0.135 Sum_probs=110.8
Q ss_pred cCCccccccHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC-------------------EEE
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVN-VSIVGVYGMGGIGKTTLVKEVARQAREDKLFD-------------------LVV 210 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-------------------~~~ 210 (1079)
|.....++|.+..++.|..++..++ ...+.++|+.|+||||+|+.+++..-.....+ -++
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~ 91 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVV 91 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 3445567898888888888887665 46777899999999999999998764321110 022
Q ss_pred EEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCCCCCCCc
Q 044755 211 FSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLK----KEEKILIILDNIWKC--VDLEAVGIPFGDDHKGC 284 (1079)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs 284 (1079)
++.......+. .+..+.+.+. .+++-++|+|+++.. ...+.+...+.......
T Consensus 92 eId~a~~~~Id---------------------~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ 150 (624)
T PRK14959 92 EIDGASNRGID---------------------DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARV 150 (624)
T ss_pred EEecccccCHH---------------------HHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCE
Confidence 33222111111 1112222211 256678999999775 33444444333222345
Q ss_pred EEEEEecC-hhhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCC-chHHHHHHHHH
Q 044755 285 KLLLTARD-RNVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGL-PIALTTIARAL 357 (1079)
Q Consensus 285 ~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~~~l 357 (1079)
.+|++|.. ..+... ......+++.+++.++....+.+.+..... .-..+.++.|++.++|- -.|+..+..++
T Consensus 151 ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 151 TFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV-DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55555544 444322 222357899999999999999887732211 11245688899999985 46777665544
No 111
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.91 E-value=3.4e-06 Score=96.98 Aligned_cols=108 Identities=26% Similarity=0.349 Sum_probs=88.4
Q ss_pred hccCCcceEEEecCccccccCccccccccccEEeccccccCCcccccCCcccceeeccCCcCcccChhhccCCcccEEcc
Q 044755 550 FTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDL 629 (1079)
Q Consensus 550 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 629 (1079)
+..++.|..|++.+|.|..+...+..+++|++|++++|.|+....+..+..|+.|++++|.+..++ .+..+++|+.+++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccC
Confidence 467888999999999998887668889999999999999988888888888999999999888774 4566889999999
Q ss_pred cccccccccCh-hhhhcccccceeeccccccc
Q 044755 630 SNCFKLKVIAP-NVISRLVRLEELYMSNCFVE 660 (1079)
Q Consensus 630 ~~~~~l~~~~~-~~l~~L~~L~~L~l~~~~~~ 660 (1079)
++| .+..+.. . ...+.+|+.+.+.++.+.
T Consensus 170 ~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 170 SYN-RIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred Ccc-hhhhhhhhh-hhhccchHHHhccCCchh
Confidence 987 5666654 2 467888888888877653
No 112
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00033 Score=80.76 Aligned_cols=184 Identities=15% Similarity=0.184 Sum_probs=109.1
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcC--------------------CCCEE
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDK--------------------LFDLV 209 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~ 209 (1079)
|.....++|.+...+.+..++..++.. +..++|..|+||||+|+.+++..-... |++ +
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v 88 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-I 88 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-E
Confidence 344556889999899999998877665 568999999999999999988753211 111 2
Q ss_pred EEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEE
Q 044755 210 VFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLL 287 (1079)
Q Consensus 210 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~ii 287 (1079)
+.+..+....+.++. +++...... - ..+++-++|+|+++... ..+.+...+-.....+++|
T Consensus 89 ~eldaas~~gId~IR-elie~~~~~---------------P-~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FI 151 (535)
T PRK08451 89 IEMDAASNRGIDDIR-ELIEQTKYK---------------P-SMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151 (535)
T ss_pred EEeccccccCHHHHH-HHHHHHhhC---------------c-ccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEE
Confidence 223222222222222 222111100 0 01456688999997652 3333433333333456766
Q ss_pred EEecCh-hhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 044755 288 LTARDR-NVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTI 353 (1079)
Q Consensus 288 vTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 353 (1079)
++|.+. .+... ......+++.+++.++....+.+.+..... ....+.++.|++.++|-+--+...
T Consensus 152 L~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 152 LATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV-SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 666543 22211 122458999999999999999887733221 112456888999999987544433
No 113
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00022 Score=84.66 Aligned_cols=178 Identities=13% Similarity=0.184 Sum_probs=109.0
Q ss_pred CCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhh---------------------cCCCCEE
Q 044755 152 KGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQARE---------------------DKLFDLV 209 (1079)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~~~ 209 (1079)
.....++|.+...+.|..++..++.. .+-++|..|+||||+|+.+.+.... ..+|+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~- 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI- 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-
Confidence 44556889999999999999877665 4789999999999999998887531 123442
Q ss_pred EEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEE
Q 044755 210 VFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLL 287 (1079)
Q Consensus 210 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ii 287 (1079)
..++.+....+.++. +++.++.... ..+++=++|+|+++.. ..++.+...+.....++.+|
T Consensus 93 ~~ld~~~~~~vd~Ir-~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifI 155 (614)
T PRK14971 93 HELDAASNNSVDDIR-NLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFI 155 (614)
T ss_pred EEecccccCCHHHHH-HHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEE
Confidence 223333222222222 2222221100 0135558899998765 33444444443333455655
Q ss_pred E-EecChhhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCch
Q 044755 288 L-TARDRNVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPI 348 (1079)
Q Consensus 288 v-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 348 (1079)
+ ||+...+... ......+++.+++.++....+.+.+..... ..-.+.+..|++.++|-.-
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-~i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-TAEPEALNVIAQKADGGMR 217 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHH
Confidence 5 4444444433 233467999999999999999887733221 1123467889999998654
No 114
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.88 E-value=0.00016 Score=77.34 Aligned_cols=134 Identities=17% Similarity=0.227 Sum_probs=70.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKE 254 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1079)
...-+.++|++|+||||+|+.+++.......-....++.++.. ++.... .+ .. . ..+.+.+.+.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~~~---~g-----~~-~---~~~~~~~~~a 104 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVGEY---IG-----HT-A---QKTREVIKKA 104 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhhhh---cc-----ch-H---HHHHHHHHhc
Confidence 3456789999999999999999887532111111223333221 111110 00 00 1 1112222222
Q ss_pred CcEEEEEeCCCCcc----------ccccccCCCCCCCCCcEEEEEecChhhhh------hc--CCCceEeCCCCCHHHHH
Q 044755 255 EKILIILDNIWKCV----------DLEAVGIPFGDDHKGCKLLLTARDRNVLF------RM--GSQKNFSIDILNEEEAW 316 (1079)
Q Consensus 255 ~~~LlvlDdv~~~~----------~~~~l~~~l~~~~~gs~iivTtR~~~v~~------~~--~~~~~~~l~~L~~~~~~ 316 (1079)
..-+|++|++.... ..+.+...+........+++++...+... .. .....+++++++.++-.
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 33588999997521 22333333323233345556655433211 11 11346899999999999
Q ss_pred HHHHHHhc
Q 044755 317 RLFKLMAD 324 (1079)
Q Consensus 317 ~lf~~~~~ 324 (1079)
+++.+.+.
T Consensus 185 ~Il~~~~~ 192 (261)
T TIGR02881 185 EIAERMVK 192 (261)
T ss_pred HHHHHHHH
Confidence 99998873
No 115
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.87 E-value=7.4e-05 Score=76.98 Aligned_cols=159 Identities=19% Similarity=0.238 Sum_probs=92.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEE 255 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1079)
...+.|+|..|+|||.|.+++++.......=..++|++. .+....+...+.. .....+.+.+. .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~--------~~~~~~~~~~~--~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADALRD--------GEIEEFKDRLR--S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHHHT--------TSHHHHHHHHC--T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHHHc--------ccchhhhhhhh--c
Confidence 346889999999999999999998764322234566644 3455555544422 11233444553 4
Q ss_pred cEEEEEeCCCCcc---cccc-ccCCCCC-CCCCcEEEEEecCh---------hhhhhcCCCceEeCCCCCHHHHHHHHHH
Q 044755 256 KILIILDNIWKCV---DLEA-VGIPFGD-DHKGCKLLLTARDR---------NVLFRMGSQKNFSIDILNEEEAWRLFKL 321 (1079)
Q Consensus 256 ~~LlvlDdv~~~~---~~~~-l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 321 (1079)
-=+|++||++... .|.. +...+.. ...|-+||+|++.. +...++....++++++.++++-..++++
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 5588999997652 2221 1111110 12466899999644 2223456677899999999999999999
Q ss_pred HhcCCCCChhhHHHHHHHHHHcCCCchHHH
Q 044755 322 MADDHVENRELQSTATEVAQACKGLPIALT 351 (1079)
Q Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 351 (1079)
++..... .--+++++-|++.+.+..-.+.
T Consensus 178 ~a~~~~~-~l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 178 KAKERGI-ELPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHTT---S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHhCC-CCcHHHHHHHHHhhcCCHHHHH
Confidence 8832111 1224667778877766544433
No 116
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00042 Score=78.44 Aligned_cols=180 Identities=11% Similarity=0.156 Sum_probs=104.2
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhc------CCCCEE-EEEEeCCccCHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQARED------KLFDLV-VFSEVSQTLDIKK 222 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~~-~wv~~~~~~~~~~ 222 (1079)
|.....++|.+...+.+.+++.++.. +.+.++|+.|+||||+|+.+.+..... ..|... +-++.....+..+
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 92 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD 92 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH
Confidence 34455678999999999999987655 478899999999999999998875421 112211 1111111111111
Q ss_pred HHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEEEe-cChhhhhh-
Q 044755 223 IQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLLTA-RDRNVLFR- 298 (1079)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~- 298 (1079)
.+++++++... .. .+++-++++|+++... .++.+...+......+.+|++| ....+...
T Consensus 93 -i~~l~~~~~~~---------------p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l 155 (367)
T PRK14970 93 -IRNLIDQVRIP---------------PQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155 (367)
T ss_pred -HHHHHHHHhhc---------------cc-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHH
Confidence 22222222100 00 1355689999987542 3444433332223345555555 33333222
Q ss_pred cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCch
Q 044755 299 MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPI 348 (1079)
Q Consensus 299 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 348 (1079)
......+++.++++++....+.+.+..... .--.+.+..|++.++|-+-
T Consensus 156 ~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 156 LSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KFEDDALHIIAQKADGALR 204 (367)
T ss_pred HhcceeEecCCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHH
Confidence 223457899999999999999887732111 1124568888899998554
No 117
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.0003 Score=82.86 Aligned_cols=197 Identities=14% Similarity=0.152 Sum_probs=111.3
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCC--EEEEEEeCCccCHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDKLFD--LVVFSEVSQTLDIKKIQQEI 227 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i 227 (1079)
|.....++|.+..++.|.+++..++.. .+-++|+.|+||||+|+.+++......... ...+-.+.. -.-.+.|
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~----c~~C~~i 95 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV----GEHCQAI 95 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc----cHHHHHH
Confidence 445567899999999999999877654 688999999999999999998764221110 000000110 0111111
Q ss_pred HHHhCCCc-----cccchHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEEEe-cChhh
Q 044755 228 AEKLGLVL-----EEETGSRRASRLYERLK----KEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLLTA-RDRNV 295 (1079)
Q Consensus 228 ~~~l~~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTt-R~~~v 295 (1079)
...-.... ......+.+..+.+.+. .+++-++|+|+++... ..+.+...+-.....+.+|++| ....+
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 11111000 00111122223333322 1355678999987653 3444433333333456666555 44443
Q ss_pred hhhc-CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHH
Q 044755 296 LFRM-GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTT 352 (1079)
Q Consensus 296 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 352 (1079)
...+ .....+++..++.++....+.+.+..... .--.+....|++.++|-+.-+..
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi-~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV-EVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 3222 23457999999999999999988732211 11235678899999998755443
No 118
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1.4e-05 Score=57.96 Aligned_cols=37 Identities=32% Similarity=0.435 Sum_probs=25.1
Q ss_pred cceEEEecCccccccCccccccccccEEeccccccCC
Q 044755 555 KLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD 591 (1079)
Q Consensus 555 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~ 591 (1079)
+|++|++++|+|+.+|..+++|++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 5677777777777777667777777777777776655
No 119
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00033 Score=82.62 Aligned_cols=202 Identities=13% Similarity=0.161 Sum_probs=110.3
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEE-eCCccCHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSE-VSQTLDIKKIQQEIA 228 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~~~~~~~~~~~~~i~ 228 (1079)
|.....++|.+..+..|..++..+++. .+.++|+.|+||||+|+.+++..-....++...|.. +......-...+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 445567889999999999988876654 478999999999999999998864322111001110 000111111111111
Q ss_pred HHhCCCc---c--ccchHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEE-EecChhhh
Q 044755 229 EKLGLVL---E--EETGSRRASRLYERLK----KEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLL-TARDRNVL 296 (1079)
Q Consensus 229 ~~l~~~~---~--~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iiv-TtR~~~v~ 296 (1079)
..-..+. + .....+.+..+.+.+. .+.+-++|+|+++... ..+.+...+-.....+.+|+ |++...+.
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 1100000 0 0011122223333331 2455688999987653 34444333333233455544 44444443
Q ss_pred hh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc-hHHHHH
Q 044755 297 FR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP-IALTTI 353 (1079)
Q Consensus 297 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~ 353 (1079)
.. ......+++.+++.++....+.+.+..... .-..+.++.|++.++|-. .|+..+
T Consensus 172 ~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi-~I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 172 ATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI-QIDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 32 334568999999999998888887632111 112456888999999944 444433
No 120
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.86 E-value=0.00017 Score=79.95 Aligned_cols=148 Identities=14% Similarity=0.168 Sum_probs=87.3
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
|.....++|.++..+.+..++..++. .++.++|.+|+||||+|+.+++.... ....++.+. .... ..++.+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~-~i~~~l~ 89 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRID-FVRNRLT 89 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHH-HHHHHHH
Confidence 44556788999999999999886654 56666999999999999999887531 134455544 2222 2222111
Q ss_pred HhCCCccccchHHHHHHHHHHH-HcCCcEEEEEeCCCCcc---ccccccCCCCCCCCCcEEEEEecChhhh-hh-cCCCc
Q 044755 230 KLGLVLEEETGSRRASRLYERL-KKEEKILIILDNIWKCV---DLEAVGIPFGDDHKGCKLLLTARDRNVL-FR-MGSQK 303 (1079)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l-~~~~~~LlvlDdv~~~~---~~~~l~~~l~~~~~gs~iivTtR~~~v~-~~-~~~~~ 303 (1079)
.. .... ..+.+-++|+||++... ....+...+.....++++|+||...... .. .....
T Consensus 90 ~~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 90 RF----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HH----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 11 0000 01345678899997651 1122222222234567888888654321 11 12234
Q ss_pred eEeCCCCCHHHHHHHHHH
Q 044755 304 NFSIDILNEEEAWRLFKL 321 (1079)
Q Consensus 304 ~~~l~~L~~~~~~~lf~~ 321 (1079)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 677778888887766554
No 121
>PRK05642 DNA replication initiation factor; Validated
Probab=97.82 E-value=0.00013 Score=76.23 Aligned_cols=149 Identities=19% Similarity=0.256 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCc
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEK 256 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1079)
..+.|+|..|+|||.|++.+++....+ -..++|++... +... ...+.+.+.+ -.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~-~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-----------------GPELLDNLEQ-YE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-----------------hHHHHHhhhh-CC
Confidence 578999999999999999998876532 23467776542 1111 0123333432 22
Q ss_pred EEEEEeCCCCc---ccccc-ccCCCCC-CCCCcEEEEEecChhh---------hhhcCCCceEeCCCCCHHHHHHHHHHH
Q 044755 257 ILIILDNIWKC---VDLEA-VGIPFGD-DHKGCKLLLTARDRNV---------LFRMGSQKNFSIDILNEEEAWRLFKLM 322 (1079)
Q Consensus 257 ~LlvlDdv~~~---~~~~~-l~~~l~~-~~~gs~iivTtR~~~v---------~~~~~~~~~~~l~~L~~~~~~~lf~~~ 322 (1079)
+||+||+... ..|+. +...+.. ...|.+||+|++.... ..++....+++++++++++-.++++++
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6788999743 34432 2222211 1246678888875422 122344578999999999999999977
Q ss_pred hcCCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 044755 323 ADDHVENRELQSTATEVAQACKGLPIALTTI 353 (1079)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 353 (1079)
+.... -.--+++..-|++++.|-.-++..+
T Consensus 179 a~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 179 ASRRG-LHLTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHcC-CCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 73211 1112467888888888865544433
No 122
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.0004 Score=84.75 Aligned_cols=179 Identities=12% Similarity=0.110 Sum_probs=107.5
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcCC----------------------CC
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDKL----------------------FD 207 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------------------F~ 207 (1079)
+.....++|.+..++.|..++..+++. .+.++|..|+||||+|+.+.+.....+. +|
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc
Confidence 334556889999999999999876655 5789999999999999999988743211 11
Q ss_pred EEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCCCCCCCcE
Q 044755 208 LVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCK 285 (1079)
Q Consensus 208 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ 285 (1079)
+++++......+.++ +++.+.+ ...-..++.-++|||+++.. ...+.|...+..-...+.
T Consensus 91 -v~eidaas~~~Vd~i-R~l~~~~----------------~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~ 152 (824)
T PRK07764 91 -VTEIDAASHGGVDDA-RELRERA----------------FFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLK 152 (824)
T ss_pred -EEEecccccCCHHHH-HHHHHHH----------------HhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeE
Confidence 222322221122221 1111111 00011245567889999875 334444444433334555
Q ss_pred EEEEe-cChhhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCch
Q 044755 286 LLLTA-RDRNVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPI 348 (1079)
Q Consensus 286 iivTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 348 (1079)
+|++| ....+... ......|++..++.++...++.+.+...... ...+....|++.++|-+.
T Consensus 153 fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~-id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 153 FIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP-VEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred EEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 55555 44444432 2335689999999999999998877322211 123456788999999774
No 123
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.80 E-value=0.00025 Score=87.22 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=92.5
Q ss_pred CccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCC---C-CEEEEEEeCCccCHHHHHHHHH
Q 044755 153 GYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKL---F-DLVVFSEVSQTLDIKKIQQEIA 228 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~~~~wv~~~~~~~~~~~~~~i~ 228 (1079)
...+++||+++++++++.|......-+.++|.+|+|||++|+.+++......- + +..+|. + +...+...
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a~-- 252 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLAG-- 252 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhhh--
Confidence 44578999999999999988666666789999999999999999988643211 1 333442 1 11111110
Q ss_pred HHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc----------ccccccCCCCCCCCCcEEEEEecChhhhh-
Q 044755 229 EKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV----------DLEAVGIPFGDDHKGCKLLLTARDRNVLF- 297 (1079)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------~~~~l~~~l~~~~~gs~iivTtR~~~v~~- 297 (1079)
.. . .....+....+.+.+.+.++.+|++|++.... +..++..+.... ..-++|-+|...+...
T Consensus 253 --~~--~-~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g~i~~IgaTt~~e~~~~ 326 (731)
T TIGR02639 253 --TK--Y-RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-GKLRCIGSTTYEEYKNH 326 (731)
T ss_pred --cc--c-cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-CCeEEEEecCHHHHHHH
Confidence 00 0 00122344555555554568999999987431 111222222121 1234555544322111
Q ss_pred -----h-cCCCceEeCCCCCHHHHHHHHHHHh
Q 044755 298 -----R-MGSQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 298 -----~-~~~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
. ......++++.++.++..++++...
T Consensus 327 ~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 327 FEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1 1122478999999999999998765
No 124
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00056 Score=81.07 Aligned_cols=181 Identities=15% Similarity=0.203 Sum_probs=108.2
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcCC-----------------CCEEEEE
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDKL-----------------FDLVVFS 212 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----------------F~~~~wv 212 (1079)
|.....++|.+...+.|..++..+++. .+-++|+.|+||||+|+.+++..-.... ++ ++++
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-viei 92 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIEM 92 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEEE
Confidence 445557889999999999999876644 5678999999999999999877532111 11 1111
Q ss_pred EeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCCCCCCCcE-
Q 044755 213 EVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLK----KEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCK- 285 (1079)
Q Consensus 213 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~- 285 (1079)
....... .+.+..+.+.+. .+++-++|+|+++.. ..+..+...+-.......
T Consensus 93 daasn~~---------------------vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tif 151 (725)
T PRK07133 93 DAASNNG---------------------VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIF 151 (725)
T ss_pred eccccCC---------------------HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEE
Confidence 1111111 122222333322 256668999998764 344444433332233444
Q ss_pred EEEEecChhhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCch-HHHHHH
Q 044755 286 LLLTARDRNVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPI-ALTTIA 354 (1079)
Q Consensus 286 iivTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~ 354 (1079)
|++|++...+... ......+++.+++.++....+.+.+..... ....+.++.|++.++|-+- |+..+-
T Consensus 152 ILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI-~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 152 ILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI-SYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred EEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4455555555433 233458999999999999999887632111 1123457889999988654 444433
No 125
>CHL00181 cbbX CbbX; Provisional
Probab=97.80 E-value=0.00074 Score=72.56 Aligned_cols=131 Identities=12% Similarity=0.124 Sum_probs=73.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCc
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEK 256 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1079)
..+.++|.+|+||||+|+.+++.......-...-|+.++. .++..... +. .. .....+.+. ...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~~---g~-----~~-~~~~~~l~~---a~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQYI---GH-----TA-PKTKEVLKK---AMG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHHh---cc-----ch-HHHHHHHHH---ccC
Confidence 3578899999999999999988754222111112444442 12222211 11 00 111222222 233
Q ss_pred EEEEEeCCCCc-----------cccccccCCCCCCCCCcEEEEEecChhhhhh--------cCCCceEeCCCCCHHHHHH
Q 044755 257 ILIILDNIWKC-----------VDLEAVGIPFGDDHKGCKLLLTARDRNVLFR--------MGSQKNFSIDILNEEEAWR 317 (1079)
Q Consensus 257 ~LlvlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~ 317 (1079)
-+|++|++... +..+.+...+.....+.+||+++....+... -.....+++++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 48999999652 1112222333333445677777765443211 1224579999999999999
Q ss_pred HHHHHh
Q 044755 318 LFKLMA 323 (1079)
Q Consensus 318 lf~~~~ 323 (1079)
++...+
T Consensus 204 I~~~~l 209 (287)
T CHL00181 204 IAKIML 209 (287)
T ss_pred HHHHHH
Confidence 999888
No 126
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.80 E-value=2.9e-06 Score=88.04 Aligned_cols=13 Identities=15% Similarity=0.475 Sum_probs=7.5
Q ss_pred ccCCCceeeccCC
Q 044755 742 GFSRLKHLHVQNN 754 (1079)
Q Consensus 742 ~~~~L~~L~l~~~ 754 (1079)
.+|+|+.|++.+|
T Consensus 239 s~~~L~El~l~dc 251 (382)
T KOG1909|consen 239 SWPHLRELNLGDC 251 (382)
T ss_pred ccchheeeccccc
Confidence 3456666666655
No 127
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.79 E-value=0.0003 Score=87.00 Aligned_cols=180 Identities=12% Similarity=0.129 Sum_probs=102.0
Q ss_pred CCccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCEEEE-EEeCCccCHHHHHHH
Q 044755 152 KGYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKL----FDLVVF-SEVSQTLDIKKIQQE 226 (1079)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~w-v~~~~~~~~~~~~~~ 226 (1079)
....+++||++++.+++..|......-+.++|.+|+||||+|+.+++....... .+..+| +..+.-..
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a------- 256 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA------- 256 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-------
Confidence 345678999999999999998766667779999999999999999988642211 122332 33321000
Q ss_pred HHHHhCCCccccchHHHHHHHHHHHH-cCCcEEEEEeCCCCcc-------ccc--cccCCCCCCCCCcEEEEEecChhhh
Q 044755 227 IAEKLGLVLEEETGSRRASRLYERLK-KEEKILIILDNIWKCV-------DLE--AVGIPFGDDHKGCKLLLTARDRNVL 296 (1079)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~-------~~~--~l~~~l~~~~~gs~iivTtR~~~v~ 296 (1079)
+... .-.-......+.+.+. .+++.+|++|++.... .-+ .+..|.... ..-++|-||...+..
T Consensus 257 -----g~~~-~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G~l~~IgaTT~~e~~ 329 (852)
T TIGR03345 257 -----GASV-KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-GELRTIAATTWAEYK 329 (852)
T ss_pred -----cccc-chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-CCeEEEEecCHHHHh
Confidence 0000 0011122333444443 2578999999987641 111 122222222 234566666653321
Q ss_pred hh-------cCCCceEeCCCCCHHHHHHHHHHHhc---CCCCChhhHHHHHHHHHHcCC
Q 044755 297 FR-------MGSQKNFSIDILNEEEAWRLFKLMAD---DHVENRELQSTATEVAQACKG 345 (1079)
Q Consensus 297 ~~-------~~~~~~~~l~~L~~~~~~~lf~~~~~---~~~~~~~~~~~~~~i~~~~~g 345 (1079)
.. ......+.+++++.+++.++++.... ....-.-..+....+++.+.+
T Consensus 330 ~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 330 KYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred hhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 11 12234799999999999999765442 111111224455666666654
No 128
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.78 E-value=0.00031 Score=79.42 Aligned_cols=171 Identities=22% Similarity=0.323 Sum_probs=99.3
Q ss_pred ccccccHHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCH
Q 044755 154 YEAFESRLCALKSVQNALT----D---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDI 220 (1079)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 220 (1079)
...+.|++..++++.+.+. . ...+-|.++|++|+|||++|+.+++.... . |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~--~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--T-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC--C-----EEEeeh----
Confidence 3457789998888887663 1 23567899999999999999999987642 1 222221
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc----------c------cccccCCCC--CCCC
Q 044755 221 KKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV----------D------LEAVGIPFG--DDHK 282 (1079)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------~------~~~l~~~l~--~~~~ 282 (1079)
.++.... .+ ........+++......+.+|++||++... . ...+...+. ....
T Consensus 199 ~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 199 SELVQKF---IG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHHhHhh---cc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 1111111 01 011223334444444577899999997631 0 011111111 1123
Q ss_pred CcEEEEEecChhhhhh--c---CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCC
Q 044755 283 GCKLLLTARDRNVLFR--M---GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGL 346 (1079)
Q Consensus 283 gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 346 (1079)
+..||.||...+.... . .-+..+++++.+.++-.++|+.+........+. ....+++.+.|.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~ 336 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGA 336 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCC
Confidence 5677878776543322 1 224679999999999999999887432221111 145567777665
No 129
>PF14516 AAA_35: AAA-like domain
Probab=97.78 E-value=0.0016 Score=71.94 Aligned_cols=201 Identities=14% Similarity=0.169 Sum_probs=119.8
Q ss_pred CCccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc-----cCHHHHH--
Q 044755 152 KGYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT-----LDIKKIQ-- 224 (1079)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~~~~-- 224 (1079)
.+..-++.|...-+++.+.+.+. ...+.|.|+-.+|||+|..++.+..+.. .+ ..+++++..- .+....+
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHH
Confidence 34445678886667777777753 3689999999999999999999887643 33 3557777542 2455444
Q ss_pred --HHHHHHhCCCccc-------cchHHHH-HHHHHHHH-c-CCcEEEEEeCCCCccc---c-ccc----cCCCCC-----
Q 044755 225 --QEIAEKLGLVLEE-------ETGSRRA-SRLYERLK-K-EEKILIILDNIWKCVD---L-EAV----GIPFGD----- 279 (1079)
Q Consensus 225 --~~i~~~l~~~~~~-------~~~~~~~-~~l~~~l~-~-~~~~LlvlDdv~~~~~---~-~~l----~~~l~~----- 279 (1079)
..+.++++....- ....... ..+.+.+. + +++.+|++|+|+.... + +++ +.....
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 4555556543210 0111112 22223332 2 5899999999986422 1 111 111000
Q ss_pred CCCCcEEEEEecCh--hhhh----hcCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 044755 280 DHKGCKLLLTARDR--NVLF----RMGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTI 353 (1079)
Q Consensus 280 ~~~gs~iivTtR~~--~v~~----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 353 (1079)
....-+.++....+ .... .+.....++|++++.+|...|..++-.... ....++|...+||+|.-+..+
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-----~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-----QEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-----HHHHHHHHHHHCCCHHHHHHH
Confidence 01111222221111 1111 133456899999999999999887752211 222889999999999999999
Q ss_pred HHHHhcC
Q 044755 354 ARALRNK 360 (1079)
Q Consensus 354 ~~~l~~~ 360 (1079)
+..+...
T Consensus 240 ~~~l~~~ 246 (331)
T PF14516_consen 240 CYLLVEE 246 (331)
T ss_pred HHHHHHc
Confidence 9988764
No 130
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00058 Score=80.02 Aligned_cols=185 Identities=15% Similarity=0.130 Sum_probs=110.8
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCC---------------------E
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDKLFD---------------------L 208 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---------------------~ 208 (1079)
|.....++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+++........+ -
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d 88 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID 88 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce
Confidence 344567889999999999999877655 468999999999999999998754221110 1
Q ss_pred EEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCCCCCC
Q 044755 209 VVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLK----KEEKILIILDNIWKC--VDLEAVGIPFGDDHK 282 (1079)
Q Consensus 209 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~ 282 (1079)
++.++.+....+. ....+.+.+. .+++-++|+|++... ...+.+...+.....
T Consensus 89 vieidaas~~gvd---------------------~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~ 147 (584)
T PRK14952 89 VVELDAASHGGVD---------------------DTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPE 147 (584)
T ss_pred EEEeccccccCHH---------------------HHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCC
Confidence 1222222111111 1222222221 245668899998764 334444333333333
Q ss_pred CcEEEE-EecChhhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc-hHHHHHHHHH
Q 044755 283 GCKLLL-TARDRNVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP-IALTTIARAL 357 (1079)
Q Consensus 283 gs~iiv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~~l 357 (1079)
...+|+ ||....+... ......+++.+++.++..+.+.+.+..... ....+....|++..+|-+ -|+..+-.++
T Consensus 148 ~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi-~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 148 HLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV-VVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred CeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555554 5444444432 233468999999999999999887732211 112345778899999966 4555544443
No 131
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.77 E-value=0.0031 Score=64.31 Aligned_cols=177 Identities=18% Similarity=0.154 Sum_probs=102.3
Q ss_pred cCCccccccHHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALT-----DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQ 225 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 225 (1079)
|.....|+|.++.++++-=.+. +..+--|.++|++|+||||||.-+++...++ +-++-+....-..-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn------~k~tsGp~leK~gD-- 93 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN------LKITSGPALEKPGD-- 93 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC------eEecccccccChhh--
Confidence 4556689999888887755554 4456789999999999999999999998653 11222211111111
Q ss_pred HHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc---------ccccccCCC-CCCCCCc-----------
Q 044755 226 EIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV---------DLEAVGIPF-GDDHKGC----------- 284 (1079)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---------~~~~l~~~l-~~~~~gs----------- 284 (1079)
...+...| +..=++++|.+.... ..+++..-. -..++++
T Consensus 94 ------------------laaiLt~L--e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 94 ------------------LAAILTNL--EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ------------------HHHHHhcC--CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 11222222 233455566655421 111110000 0111222
Q ss_pred EEEEEecChhhhhhcC--CCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHHHH
Q 044755 285 KLLLTARDRNVLFRMG--SQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIARA 356 (1079)
Q Consensus 285 ~iivTtR~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~ 356 (1079)
-|=.|||.-.+...+. -..+.+++-.+.+|-.+...+.+..-. -+-.++.+.+|+++..|-|--+.-+-+.
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~-i~i~~~~a~eIA~rSRGTPRIAnRLLrR 226 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG-IEIDEEAALEIARRSRGTPRIANRLLRR 226 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC-CCCChHHHHHHHHhccCCcHHHHHHHHH
Confidence 2445888665443322 234678999999999999999883211 1122456999999999999654443333
No 132
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.0011 Score=76.67 Aligned_cols=180 Identities=15% Similarity=0.124 Sum_probs=105.7
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------CCCEEE
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDK-------------------LFDLVV 210 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 210 (1079)
|.....++|.+.....+..++..+... .+.++|+.|+||||+|+.++....... .|...+
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE
Confidence 344556789999999999999876554 557899999999999999988753110 011122
Q ss_pred EEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCCCCCCCc
Q 044755 211 FSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLK----KEEKILIILDNIWKC--VDLEAVGIPFGDDHKGC 284 (1079)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs 284 (1079)
++..+....+. ....+.+... .+++-++|+|+++.. ...+.+...+.......
T Consensus 92 eidaas~~gvd---------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~ 150 (486)
T PRK14953 92 EIDAASNRGID---------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRT 150 (486)
T ss_pred EEeCccCCCHH---------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 23222111111 1122222221 246679999998764 23344433333323344
Q ss_pred EEEEEe-cChhhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHH
Q 044755 285 KLLLTA-RDRNVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTT 352 (1079)
Q Consensus 285 ~iivTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 352 (1079)
.+|++| +...+... ......+++.+++.++....+.+.+..... ....+.+..|++.++|.+-.+..
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 455444 44333322 223457899999999999999887732111 11235577888999987654433
No 133
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.72 E-value=0.001 Score=76.44 Aligned_cols=184 Identities=16% Similarity=0.168 Sum_probs=107.1
Q ss_pred CCccccccHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhc---------------------CCCCEE
Q 044755 152 KGYEAFESRLCALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQARED---------------------KLFDLV 209 (1079)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~~~ 209 (1079)
.....++|.+..+..+.+++..+.. ..+-++|..|+||||+|+.+++..-.. .+++ .
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-V 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-e
Confidence 4455688999999999999987665 467889999999999999998875321 1122 1
Q ss_pred EEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEE
Q 044755 210 VFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLL 287 (1079)
Q Consensus 210 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ii 287 (1079)
+++.......+.+ .+++.+.+.. .. ..+.+-++|+|+++.. ...+.+...+.....+..+|
T Consensus 93 ~~i~g~~~~gid~-ir~i~~~l~~---------------~~-~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 93 LEIDGASHRGIED-IRQINETVLF---------------TP-SKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred EEeeccccCCHHH-HHHHHHHHHh---------------hh-hcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEE
Confidence 2222111111111 1112211110 00 1246678899998754 22333333333333355666
Q ss_pred EEec-Chhhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc-hHHHHHH
Q 044755 288 LTAR-DRNVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP-IALTTIA 354 (1079)
Q Consensus 288 vTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~ 354 (1079)
++|. ...+... ......+++.++++++....+.+.+..... .-..+.++.|++.++|-+ .|+..+-
T Consensus 156 l~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~-~i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI-ETSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred EEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6653 3333222 223457999999999999988887732111 112456888999999965 4444433
No 134
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.72 E-value=0.00092 Score=70.13 Aligned_cols=186 Identities=17% Similarity=0.192 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC----EEEEEEeCCccCHHHHHHHHHHHhCC
Q 044755 161 LCALKSVQNALT---DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFD----LVVFSEVSQTLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 161 ~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1079)
.+.++++.+++. ....+-+.|||..|.|||++++++.+.+.....-+ .++.|.....++...+...|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 344666666665 33567899999999999999999998865321111 47788888999999999999999998
Q ss_pred CccccchH-HHHHHHHHHHHcCCcEEEEEeCCCCcc------------ccccccCCCCCCCCCcEEEEEecChhhhhhc-
Q 044755 234 VLEEETGS-RRASRLYERLKKEEKILIILDNIWKCV------------DLEAVGIPFGDDHKGCKLLLTARDRNVLFRM- 299 (1079)
Q Consensus 234 ~~~~~~~~-~~~~~l~~~l~~~~~~LlvlDdv~~~~------------~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~- 299 (1079)
+....... .........++.-+-=+||+|++.+.- .+..++.. -.=+-|.|-|+.---+-..
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne----L~ipiV~vGt~~A~~al~~D 198 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE----LQIPIVGVGTREAYRALRTD 198 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc----cCCCeEEeccHHHHHHhccC
Confidence 87543333 323333444444456689999998741 12222221 1223455555433211111
Q ss_pred ----CCCceEeCCCCCHHH-HHHHHHHHh---c-CCCCChhhHHHHHHHHHHcCCCchHH
Q 044755 300 ----GSQKNFSIDILNEEE-AWRLFKLMA---D-DHVENRELQSTATEVAQACKGLPIAL 350 (1079)
Q Consensus 300 ----~~~~~~~l~~L~~~~-~~~lf~~~~---~-~~~~~~~~~~~~~~i~~~~~glPlai 350 (1079)
.-..++.+.....++ ...|+.... . .....-...++++.|...++|+.--+
T Consensus 199 ~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 199 PQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 112355666655444 344443322 1 11112234678999999999976433
No 135
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.72 E-value=0.00084 Score=72.28 Aligned_cols=130 Identities=14% Similarity=0.152 Sum_probs=72.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcE
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKI 257 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 257 (1079)
-+.++|.+|+|||++|+.+++...........-|+.++. .++...+ .+. .. .....+++. -..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~~~~---~g~-----~~-~~~~~~~~~---a~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLVGQY---IGH-----TA-PKTKEILKR---AMGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHhHhh---ccc-----ch-HHHHHHHHH---ccCc
Confidence 578999999999999998887764322222112444442 1222111 111 11 112222222 2346
Q ss_pred EEEEeCCCCc-----------cccccccCCCCCCCCCcEEEEEecChhhhhhc--------CCCceEeCCCCCHHHHHHH
Q 044755 258 LIILDNIWKC-----------VDLEAVGIPFGDDHKGCKLLLTARDRNVLFRM--------GSQKNFSIDILNEEEAWRL 318 (1079)
Q Consensus 258 LlvlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~l 318 (1079)
+|++|++... ..++.+...+.....+.+||+++........+ .....+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999632 11223333333334466777777644322111 1135799999999999999
Q ss_pred HHHHh
Q 044755 319 FKLMA 323 (1079)
Q Consensus 319 f~~~~ 323 (1079)
+...+
T Consensus 204 ~~~~l 208 (284)
T TIGR02880 204 AGLML 208 (284)
T ss_pred HHHHH
Confidence 98887
No 136
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.0011 Score=79.27 Aligned_cols=195 Identities=14% Similarity=0.160 Sum_probs=110.7
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
|.....++|.+..++.|..++..+.+ ..+.++|..|+||||+|+.+++......... ....++.....+.+..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAE 85 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhc
Confidence 34455788999999999988886654 4568999999999999999998764211100 0001111222333322
Q ss_pred HhCCCc---c--ccchHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEEEecC-hhhhh
Q 044755 230 KLGLVL---E--EETGSRRASRLYERLK----KEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLTARD-RNVLF 297 (1079)
Q Consensus 230 ~l~~~~---~--~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~ 297 (1079)
...... + .....+....+.+.+. .+++-++|+|+++.. ...+.+...+......+.+|++|.. ..+..
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhH
Confidence 221110 0 0111122222333222 146678999998764 3344443333333345566665543 33332
Q ss_pred h-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHH
Q 044755 298 R-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTT 352 (1079)
Q Consensus 298 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 352 (1079)
. ......+++..++.++....+.+.+...... --.+.+..|++.++|.+..+..
T Consensus 166 tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 166 TILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 2 2223578899999999999988887332111 1245688999999998865443
No 137
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.0012 Score=77.56 Aligned_cols=177 Identities=11% Similarity=0.166 Sum_probs=107.5
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcC--------------------CCCEE
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDK--------------------LFDLV 209 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~ 209 (1079)
|.....++|.+..++.|..++..++.+ .+-++|+.|+||||+|+.+++..-... +++.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv- 90 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV- 90 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe-
Confidence 444557889999999999999876554 578999999999999999998764221 1221
Q ss_pred EEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCCCCCCC
Q 044755 210 VFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLK----KEEKILIILDNIWKCV--DLEAVGIPFGDDHKG 283 (1079)
Q Consensus 210 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~g 283 (1079)
+++.......+. .+..+.+.+. .+++-++|+|++.... .++.+...+......
T Consensus 91 ~~idgas~~~vd---------------------dIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~ 149 (563)
T PRK06647 91 IEIDGASNTSVQ---------------------DVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPY 149 (563)
T ss_pred EEecCcccCCHH---------------------HHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCC
Confidence 112111111111 1112221111 2466688999987653 455554444433445
Q ss_pred cEEEEEec-Chhhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHH
Q 044755 284 CKLLLTAR-DRNVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIAL 350 (1079)
Q Consensus 284 s~iivTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 350 (1079)
..+|++|. ...+... ......+++.+++.++....+.+.+..... .--.+.+..|++.++|-+-.+
T Consensus 150 ~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi-~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 150 IVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI-KYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred EEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 56655554 3333322 223446899999999999888887732211 122456778999999977443
No 138
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.66 E-value=1.5e-06 Score=97.92 Aligned_cols=126 Identities=25% Similarity=0.310 Sum_probs=75.0
Q ss_pred cceEEEecCccccccCccccccccccEEeccccccCCcccccCCcccceeeccCCcCcccChh-hccCCcccEEcccccc
Q 044755 555 KLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDLSNCF 633 (1079)
Q Consensus 555 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 633 (1079)
.|.+.++++|.+..+-.++.-+++|+.|+|++|++.....+..|.+|++|||+.|.+..+|.- ... .+|+.|.+++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~g-c~L~~L~lrnN- 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVG-CKLQLLNLRNN- 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhh-hhheeeeeccc-
Confidence 355666666666666666666777777777777766655666777777777777766666542 122 23667777665
Q ss_pred cccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCC
Q 044755 634 KLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKND 694 (1079)
Q Consensus 634 ~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 694 (1079)
.++.+ .+ +.+|.+|+.|++++|-+. ....+.-|..|..|+.|.+.+|..
T Consensus 243 ~l~tL-~g-ie~LksL~~LDlsyNll~----------~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 243 ALTTL-RG-IENLKSLYGLDLSYNLLS----------EHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHHhh-hh-HHhhhhhhccchhHhhhh----------cchhhhHHHHHHHHHHHhhcCCcc
Confidence 45554 22 566777777777665443 112233344444555666665543
No 139
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=4e-06 Score=84.71 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=18.2
Q ss_pred ccCCcccEEcccccccccccChhhhhcccccceeeccccc
Q 044755 619 GHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCF 658 (1079)
Q Consensus 619 ~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 658 (1079)
.++++|.+|||++|-.++.--...+.+++.|++|.++.|+
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 3445555555555443333222224445555555555544
No 140
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.0016 Score=77.52 Aligned_cols=194 Identities=15% Similarity=0.140 Sum_probs=108.3
Q ss_pred CCccccccHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 044755 152 KGYEAFESRLCALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEK 230 (1079)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 230 (1079)
.....++|.+.....|..++..++. ..+.++|..|+||||+|+.+++..-...... .. ......-...+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~----~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-PT----PEPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-CC----CCCCcccHHHHHHhcC
Confidence 3445678999999999999886653 5778999999999999999998864321110 00 0111112222222222
Q ss_pred hCCCc-----cccchHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEEEec-Chhhhhh
Q 044755 231 LGLVL-----EEETGSRRASRLYERLK----KEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLTAR-DRNVLFR 298 (1079)
Q Consensus 231 l~~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~ 298 (1079)
..... ......+.+..+.+.+. .+++-++|+|+++.. ..+..+...+-.......+|++|. ...+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 11110 00111122222322222 245568899999865 334444433333233445554444 3333322
Q ss_pred -cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHH
Q 044755 299 -MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALT 351 (1079)
Q Consensus 299 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 351 (1079)
......+++..++.++....+.+.+...... --.+.+..|++.++|-+..+.
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-IEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 2234578889999999888888777332111 113457889999999775443
No 141
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.64 E-value=0.0003 Score=78.29 Aligned_cols=107 Identities=18% Similarity=0.203 Sum_probs=72.2
Q ss_pred ccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCc
Q 044755 156 AFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVL 235 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 235 (1079)
+.++.+...+.+...|... +.|.++|++|+|||++|+.+++.......|+.+.||++++..+..+.+..+.-. +...
T Consensus 176 d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vgy 252 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVGF 252 (459)
T ss_pred cccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCCe
Confidence 3456677888888888754 577889999999999999999988766678899999999988877776543111 1100
Q ss_pred cccchHHHHHHHHHHHH--cCCcEEEEEeCCCCc
Q 044755 236 EEETGSRRASRLYERLK--KEEKILIILDNIWKC 267 (1079)
Q Consensus 236 ~~~~~~~~~~~l~~~l~--~~~~~LlvlDdv~~~ 267 (1079)
. .. ......+..... .++++++|+|++...
T Consensus 253 ~-~~-~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 253 R-RK-DGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred E-ec-CchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0 00 001111112222 247899999999764
No 142
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.63 E-value=0.00061 Score=84.91 Aligned_cols=157 Identities=14% Similarity=0.173 Sum_probs=93.3
Q ss_pred ccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCEEEEEEeCCccCHHHHHHHHHH
Q 044755 154 YEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKL----FDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
..+++||++++++++++|......-+.++|.+|+|||++|+.++........ -+..+|. + +...++.
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a---- 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA---- 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc----
Confidence 3467899999999999998655556679999999999999999988642211 1234442 1 2211111
Q ss_pred HhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc---------ccccccCCCCCCCCCcEEEEEecChhhhh---
Q 044755 230 KLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV---------DLEAVGIPFGDDHKGCKLLLTARDRNVLF--- 297 (1079)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---------~~~~l~~~l~~~~~gs~iivTtR~~~v~~--- 297 (1079)
+....+ .-.+....+.+.+.+.++.+|++|++.... +...+..+.... ..-++|.+|...+...
T Consensus 249 --g~~~~g-e~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ey~~~ie 324 (821)
T CHL00095 249 --GTKYRG-EFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDEYRKHIE 324 (821)
T ss_pred --cCCCcc-HHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHHHHHHHh
Confidence 111111 122345556666655678999999986421 111222222111 1245666666554321
Q ss_pred ---h-cCCCceEeCCCCCHHHHHHHHHHHh
Q 044755 298 ---R-MGSQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 298 ---~-~~~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
. ......+++...+.++...+++...
T Consensus 325 ~D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 325 KDPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred cCHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 1 1223468899999999988887543
No 143
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.004 Score=65.78 Aligned_cols=199 Identities=19% Similarity=0.282 Sum_probs=120.4
Q ss_pred ccCCccccccHHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC
Q 044755 150 SRKGYEAFESRLCALKSVQNALT----D---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ 216 (1079)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 216 (1079)
+...+..+.|-++.+++|.+.+. + +.++=|-++|++|+|||-||++|+++-... |+.+..
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvg 218 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVG 218 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEecc
Confidence 34455667788888888888764 1 246788899999999999999999986532 333332
Q ss_pred ccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc------------c----ccccCCCC--
Q 044755 217 TLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD------------L----EAVGIPFG-- 278 (1079)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~------------~----~~l~~~l~-- 278 (1079)
. ++.++. +| .....+..+++.-++..+.+|++|.++.... . -.+...+.
T Consensus 219 S----ElVqKY---iG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 219 S----ELVQKY---IG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred H----HHHHHH---hc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 2 122111 11 1123345566666667999999999876410 0 01111111
Q ss_pred CCCCCcEEEEEecChhhhhh-----cCCCceEeCCCCCHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHHcCCCc----
Q 044755 279 DDHKGCKLLLTARDRNVLFR-----MGSQKNFSIDILNEEEAWRLFKLMADDH--VENRELQSTATEVAQACKGLP---- 347 (1079)
Q Consensus 279 ~~~~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~i~~~~~glP---- 347 (1079)
+....-|||..|...++... -.-++.|++..-+.+.-.++|+=+...- ...-+ .+.|++.|.|.-
T Consensus 286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdl 361 (406)
T COG1222 286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADL 361 (406)
T ss_pred CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHH
Confidence 12345689998876666543 2335789998777777777777776321 22233 445777777764
Q ss_pred hHHHHHHHHHhcC------ChhHHHHHHHHh
Q 044755 348 IALTTIARALRNK------SVPEWKSALQEL 372 (1079)
Q Consensus 348 lai~~~~~~l~~~------~~~~w~~~~~~l 372 (1079)
-|+.+=|++++-+ +.+.+..+.+..
T Consensus 362 kaictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 362 KAICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 4566667776432 345555555543
No 144
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.60 E-value=0.00066 Score=77.78 Aligned_cols=156 Identities=17% Similarity=0.193 Sum_probs=93.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCc
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEK 256 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1079)
..+.|+|..|+|||+|++++++....+..=..++|++.. ++..++...+... ....+.+.+. ..
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE------KFTNDFVNALRNN--------KMEEFKEKYR--SV 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC--------CHHHHHHHHH--hC
Confidence 468899999999999999999987633111345666543 3344444443211 1223344443 23
Q ss_pred EEEEEeCCCCccc---c-ccccCCCCC-CCCCcEEEEEecCh-h--------hhhhcCCCceEeCCCCCHHHHHHHHHHH
Q 044755 257 ILIILDNIWKCVD---L-EAVGIPFGD-DHKGCKLLLTARDR-N--------VLFRMGSQKNFSIDILNEEEAWRLFKLM 322 (1079)
Q Consensus 257 ~LlvlDdv~~~~~---~-~~l~~~l~~-~~~gs~iivTtR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 322 (1079)
-+||+||++.... + +.+...+.. ...|..||+|+... . +..++.....+++++.+.++-..++.+.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 4888999976421 1 112111111 11355688877642 1 2223444567999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHcCCCchH
Q 044755 323 ADDHVENRELQSTATEVAQACKGLPIA 349 (1079)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~~~glPla 349 (1079)
+.... ..--+++...|++.+.|..-.
T Consensus 281 ~~~~~-~~l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 281 AEEEG-LELPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHcC-CCCCHHHHHHHHHhcCCCHHH
Confidence 84321 112256788888888886554
No 145
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.60 E-value=0.0011 Score=74.46 Aligned_cols=173 Identities=16% Similarity=0.239 Sum_probs=99.3
Q ss_pred CccccccHHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccC
Q 044755 153 GYEAFESRLCALKSVQNALT----D---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLD 219 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 219 (1079)
...++.|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++.... .| +.+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~--~f---i~i~~----- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA--TF---IRVVG----- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CE---EEEeh-----
Confidence 34457788877777766553 1 23567889999999999999999987642 22 22211
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc------------c----cccccCCCC--CCC
Q 044755 220 IKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV------------D----LEAVGIPFG--DDH 281 (1079)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~l~--~~~ 281 (1079)
..+.... .+ ........++.......+.+|++|+++... . +..+...+. ...
T Consensus 213 -s~l~~k~---~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 -SEFVQKY---LG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred -HHHHHHh---cc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 1111111 11 011223344455555688999999987531 0 111111111 122
Q ss_pred CCcEEEEEecChhhhhh--c---CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 282 KGCKLLLTARDRNVLFR--M---GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 282 ~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
.+..||.||...+.... . .-+..++++..+.++-.++|+.+.......++. ...++++.+.|.-
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 45678888876544332 2 235678999999999988998776332211111 1456677776664
No 146
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=1.7e-05 Score=80.18 Aligned_cols=43 Identities=14% Similarity=0.229 Sum_probs=20.8
Q ss_pred CCCcceEEeecCCCCCcccchHHhccCCccceEeeccccccccc
Q 044755 800 FNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEI 843 (1079)
Q Consensus 800 ~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l 843 (1079)
+|.+--|++.. .++.++.....+..++.|..|++.+.|-+..+
T Consensus 223 ~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 223 FPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 44444444443 34444444444455566666665555544333
No 147
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.002 Score=76.20 Aligned_cols=191 Identities=15% Similarity=0.151 Sum_probs=106.4
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
|.....++|.+...+.+.+++..++. ..+-++|+.|+||||+|+.+++..-....-+ ....+.-...+.+..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITN 84 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhc
Confidence 44556788999999999999986654 4567799999999999999987753221100 001111111122211
Q ss_pred HhCCCcc-----ccchHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEE-EecChhhhh
Q 044755 230 KLGLVLE-----EETGSRRASRLYERLK----KEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLL-TARDRNVLF 297 (1079)
Q Consensus 230 ~l~~~~~-----~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~ 297 (1079)
....+.. .....+....+.+... .++.-++|+|+++.. ..+..+...+........+|+ ||....+..
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 1110000 0011122223333322 246668899999864 334444333333233444444 444443332
Q ss_pred h-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchH
Q 044755 298 R-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIA 349 (1079)
Q Consensus 298 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 349 (1079)
. ......+++.+++.++....+.+.+...... --.+.+..|++.++|-+.-
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~-i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGIE-YEDEALRLIARAAEGGMRD 216 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHH
Confidence 2 2234578899999999999998877322111 1235677888899886643
No 148
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.58 E-value=0.00049 Score=72.85 Aligned_cols=164 Identities=19% Similarity=0.240 Sum_probs=104.7
Q ss_pred cccccHHHHHHHHHHHhcCCC---ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHh
Q 044755 155 EAFESRLCALKSVQNALTDVN---VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKL 231 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 231 (1079)
..|.+|+..+..+..++.+.. ++.|-|+|..|+|||.+.+++.+.... ..+|+++-+.++...++..|+.++
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHh
Confidence 356789999999999988543 345688999999999999999988732 258999999999999999999998
Q ss_pred C-CCccccch---HHHHHHHHHHHH-------cCCcEEEEEeCCCCccccccccCC----CC--CCCCCcEEEEEecC-h
Q 044755 232 G-LVLEEETG---SRRASRLYERLK-------KEEKILIILDNIWKCVDLEAVGIP----FG--DDHKGCKLLLTARD-R 293 (1079)
Q Consensus 232 ~-~~~~~~~~---~~~~~~l~~~l~-------~~~~~LlvlDdv~~~~~~~~l~~~----l~--~~~~gs~iivTtR~-~ 293 (1079)
+ .+.++... .+........+. .++.++||||+++...+.+.+..+ +. ...+...|+...-. +
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCE 160 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence 6 22222111 122222222222 246899999999876543332110 00 11223333332222 2
Q ss_pred hhhhh-cCCC--ceEeCCCCCHHHHHHHHHHHh
Q 044755 294 NVLFR-MGSQ--KNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 294 ~v~~~-~~~~--~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
..... ++.. .++.....+.+|...++.+.-
T Consensus 161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 161 KQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 22221 3433 367788889999988887654
No 149
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.56 E-value=3.5e-05 Score=92.19 Aligned_cols=125 Identities=22% Similarity=0.194 Sum_probs=88.5
Q ss_pred cceeEEEecCCCCC--CCCC--ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCcccccccccc
Q 044755 505 KECYAISLRGCSIH--ELPE--GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQ 580 (1079)
Q Consensus 505 ~~~~~l~l~~~~~~--~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 580 (1079)
.+++++.+.+...- .-+. +..+|.|++|.+.+-.....- ....+.++++|+.||+++++++.+ .+|++|+||+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 45667776653221 1111 235899999999874432211 234567899999999999999988 7899999999
Q ss_pred EEeccccccCC---cccccCCcccceeeccCCcCcccCh-------hhccCCcccEEccccc
Q 044755 581 TLCLVECMLDD---IAIIGKLKNLEILSFWGSVIVMLPE-------ELGHLTKLRQLDLSNC 632 (1079)
Q Consensus 581 ~L~L~~~~l~~---~~~i~~L~~L~~L~l~~~~l~~lp~-------~i~~L~~L~~L~l~~~ 632 (1079)
.|.+++=.+.. ...+.+|++|++||+|.......+. .-..|++||.||.++.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 99998887765 5788899999999999874433332 1134788888888764
No 150
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.55 E-value=0.0013 Score=75.40 Aligned_cols=160 Identities=16% Similarity=0.230 Sum_probs=91.6
Q ss_pred CccccccHHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcC---CCCEEEEEEeCC
Q 044755 153 GYEAFESRLCALKSVQNALT----D---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDK---LFDLVVFSEVSQ 216 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~~~~ 216 (1079)
...++.|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++.....- ......|+++..
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 34556788888888877753 1 1345688999999999999999999875221 122345555543
Q ss_pred ccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHH----HcCCcEEEEEeCCCCcc---------cc-----ccccCCCC
Q 044755 217 TLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERL----KKEEKILIILDNIWKCV---------DL-----EAVGIPFG 278 (1079)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~~---------~~-----~~l~~~l~ 278 (1079)
.. ++... .+ . .......+++.. ..+++++|++|+++... +. ..+...+.
T Consensus 260 ~e----Ll~ky---vG-----e-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 260 PE----LLNKY---VG-----E-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred hh----hcccc---cc-----h-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 21 11100 00 0 011122222222 23578999999998531 11 12212221
Q ss_pred C--CCCCcEEEEEecChhhhhh--c---CCCceEeCCCCCHHHHHHHHHHHhcC
Q 044755 279 D--DHKGCKLLLTARDRNVLFR--M---GSQKNFSIDILNEEEAWRLFKLMADD 325 (1079)
Q Consensus 279 ~--~~~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~ 325 (1079)
. ...+..||.||...+.... . .-+..|+++..+.++..++|..+...
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1 1234455666655443321 1 23457999999999999999998843
No 151
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0041 Score=71.65 Aligned_cols=154 Identities=16% Similarity=0.177 Sum_probs=93.4
Q ss_pred ccccHHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHH
Q 044755 156 AFESRLCALKSVQNALT------DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
+.+|-++.+++|++.|. +-+-+++++||++|||||.|++.+++-.. +.| +-++++.-.|..+|-..--.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~--Rkf---vR~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG--RKF---VRISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC--CCE---EEEecCccccHHHhcccccc
Confidence 45688999999999986 23457999999999999999999998875 334 44555655555544322211
Q ss_pred HhCCCccccchHHHHHHHHHHHH--cCCcEEEEEeCCCCcc------------------ccccccCCCCC-CCCCcEEEE
Q 044755 230 KLGLVLEEETGSRRASRLYERLK--KEEKILIILDNIWKCV------------------DLEAVGIPFGD-DHKGCKLLL 288 (1079)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l~--~~~~~LlvlDdv~~~~------------------~~~~l~~~l~~-~~~gs~iiv 288 (1079)
.+|. .-.++.+.++ +.++-+++||.++... +-..|...+.+ ..-=|+|++
T Consensus 399 YIGa---------mPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 399 YIGA---------MPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred cccc---------CChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 1211 1123333333 2478899999987641 11112111111 111244544
Q ss_pred -EecCh-h-h-hhhcCCCceEeCCCCCHHHHHHHHHHHh
Q 044755 289 -TARDR-N-V-LFRMGSQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 289 -TtR~~-~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
||-+. + + +.-+..-.+|++.+.+++|-.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44332 2 1 1123445789999999999999988876
No 152
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.55 E-value=1.2e-05 Score=92.47 Aligned_cols=140 Identities=24% Similarity=0.308 Sum_probs=99.9
Q ss_pred ecCCCCCCCCC-ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccccC
Q 044755 512 LRGCSIHELPE-GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLD 590 (1079)
Q Consensus 512 l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~ 590 (1079)
+..+.+..+-. .-.++++..|.+.++... .+ ...+..+.+|++|++++|.|+++ ..+..+..|+.|++.+|.+.
T Consensus 79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i---~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 79 LRQNLIAKILNHLSKLKSLEALDLYDNKIE-KI---ENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred cchhhhhhhhcccccccceeeeeccccchh-hc---ccchhhhhcchheeccccccccc-cchhhccchhhheeccCcch
Confidence 44444444222 335677888888776542 22 22257799999999999999987 35778888999999999999
Q ss_pred CcccccCCcccceeeccCCcCcccChh-hccCCcccEEcccccccccccChhhhhcccccceeecccccc
Q 044755 591 DIAIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 591 ~~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 659 (1079)
.+..+..+.+|+.+++++|.+..+... ...+.+|+.+.+.+| .+..+.. +..+..+..+++..+.+
T Consensus 154 ~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n-~i~~i~~--~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 154 DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN-SIREIEG--LDLLKKLVLLSLLDNKI 220 (414)
T ss_pred hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC-chhcccc--hHHHHHHHHhhcccccc
Confidence 988888899999999999988888654 578899999999887 4444322 34444455555555544
No 153
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.55 E-value=0.00098 Score=75.28 Aligned_cols=135 Identities=24% Similarity=0.255 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccc
Q 044755 160 RLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEET 239 (1079)
Q Consensus 160 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 239 (1079)
|.....++++.+..... ++.|.|+-++||||+++.+....... .+++...+......-+.+....
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~~~--------- 86 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLLRA--------- 86 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHHHH---------
Confidence 44556666666654433 99999999999999997666554321 5666554332111111111111
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEeCCCCccccccccCCCCCCCCCcEEEEEecChhhhhh------cCCCceEeCCCCCHH
Q 044755 240 GSRRASRLYERLKKEEKILIILDNIWKCVDLEAVGIPFGDDHKGCKLLLTARDRNVLFR------MGSQKNFSIDILNEE 313 (1079)
Q Consensus 240 ~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~------~~~~~~~~l~~L~~~ 313 (1079)
...+...++..++||.|.....|+.....+.+..+. +|++|+-+...... .|....+++.||+..
T Consensus 87 --------~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 87 --------YIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred --------HHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 111111277899999999999999877777666655 89998887654332 244568999999988
Q ss_pred HHHHH
Q 044755 314 EAWRL 318 (1079)
Q Consensus 314 ~~~~l 318 (1079)
|-..+
T Consensus 158 Efl~~ 162 (398)
T COG1373 158 EFLKL 162 (398)
T ss_pred HHHhh
Confidence 88654
No 154
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.00094 Score=79.25 Aligned_cols=180 Identities=16% Similarity=0.217 Sum_probs=106.6
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcC--------------------CCCEE
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDK--------------------LFDLV 209 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~ 209 (1079)
|.....++|.+...+.|..++..+++. .+-++|..|+||||+|+.+++..-... ++|.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~- 90 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV- 90 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe-
Confidence 445567889999999999998877654 568899999999999999988754221 1111
Q ss_pred EEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCCCCCCC
Q 044755 210 VFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLK----KEEKILIILDNIWKCV--DLEAVGIPFGDDHKG 283 (1079)
Q Consensus 210 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~g 283 (1079)
+.+.......+.+ +..+.+.+. .+++-++|+|+++... ..+.+...+-.....
T Consensus 91 ~eid~~s~~~v~~---------------------ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~ 149 (576)
T PRK14965 91 FEIDGASNTGVDD---------------------IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPH 149 (576)
T ss_pred eeeeccCccCHHH---------------------HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCC
Confidence 1122111111111 222222221 2455678899997652 333333333222335
Q ss_pred cEEEE-EecChhhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc-hHHHHH
Q 044755 284 CKLLL-TARDRNVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP-IALTTI 353 (1079)
Q Consensus 284 s~iiv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~ 353 (1079)
+.+|+ ||....+... ......+++.+++.++....+...+..... .--.+.+..|++.++|-. .|+..+
T Consensus 150 ~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi-~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 150 VKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI-SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred eEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55554 5444444432 223457889999999998888877632211 112455778999998854 444444
No 155
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.51 E-value=0.0012 Score=75.62 Aligned_cols=155 Identities=13% Similarity=0.208 Sum_probs=93.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC-EEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFD-LVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKE 254 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1079)
..-+.|+|..|+|||+|++.+++..... +.+ .++|++. .++..++...+... ....+.+.+. .
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~f~~~~~-~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMKEG--------KLNEFREKYR-K 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHHHHHHHH-h
Confidence 3458999999999999999999987532 233 4677765 34555555544311 1122333333 2
Q ss_pred CcEEEEEeCCCCcc---cc-ccccCCCCC-CCCCcEEEEEec-Chhh--------hhhcCCCceEeCCCCCHHHHHHHHH
Q 044755 255 EKILIILDNIWKCV---DL-EAVGIPFGD-DHKGCKLLLTAR-DRNV--------LFRMGSQKNFSIDILNEEEAWRLFK 320 (1079)
Q Consensus 255 ~~~LlvlDdv~~~~---~~-~~l~~~l~~-~~~gs~iivTtR-~~~v--------~~~~~~~~~~~l~~L~~~~~~~lf~ 320 (1079)
+.-+|++||+.... .+ +.+...+.. ...|..||+||. ...- ..++....++++++.+.+.-.++++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 45589999997531 11 112111111 112457888875 3221 1234556688999999999999999
Q ss_pred HHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 321 LMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
+.+.... -.--+++...|++.+.|.-
T Consensus 274 ~~~~~~~-~~l~~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 274 KMLEIEH-GELPEEVLNFVAENVDDNL 299 (440)
T ss_pred HHHHhcC-CCCCHHHHHHHHhccccCH
Confidence 9884321 1122467888888887753
No 156
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.51 E-value=0.0024 Score=79.16 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=37.1
Q ss_pred ccccHHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 156 AFESRLCALKSVQNALT------DVNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.++|.++.++++.+++. ....+++.++|++|+|||++|+.+++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 35688888888887664 22345899999999999999999998874
No 157
>PRK06620 hypothetical protein; Validated
Probab=97.50 E-value=0.00052 Score=70.32 Aligned_cols=131 Identities=17% Similarity=0.020 Sum_probs=79.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCc
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEK 256 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1079)
+.+.|+|++|+|||+|++.+++... . .++. .... .. +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~--------------------~~-------~~~--~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF--------------------NE-------EIL--EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh--------------------ch-------hHH--hcC
Confidence 5689999999999999998876542 1 1211 0000 00 011 133
Q ss_pred EEEEEeCCCCccc--cccccCCCCCCCCCcEEEEEecChhh-------hhhcCCCceEeCCCCCHHHHHHHHHHHhcCCC
Q 044755 257 ILIILDNIWKCVD--LEAVGIPFGDDHKGCKLLLTARDRNV-------LFRMGSQKNFSIDILNEEEAWRLFKLMADDHV 327 (1079)
Q Consensus 257 ~LlvlDdv~~~~~--~~~l~~~l~~~~~gs~iivTtR~~~v-------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 327 (1079)
-++++||++...+ +-.+...+. ..|..||+|++.... ..++....+++++++++++-..++++.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 5788899974321 111111111 346689999884422 23355667899999999999999988874211
Q ss_pred CChhhHHHHHHHHHHcCCCch
Q 044755 328 ENRELQSTATEVAQACKGLPI 348 (1079)
Q Consensus 328 ~~~~~~~~~~~i~~~~~glPl 348 (1079)
-.--+++.+-|++.+.|---
T Consensus 165 -l~l~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 165 -VTISRQIIDFLLVNLPREYS 184 (214)
T ss_pred -CCCCHHHHHHHHHHccCCHH
Confidence 11225677888888876543
No 158
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.50 E-value=0.00011 Score=53.33 Aligned_cols=33 Identities=45% Similarity=0.573 Sum_probs=15.6
Q ss_pred ccceeeccCCcCcccChhhccCCcccEEccccc
Q 044755 600 NLEILSFWGSVIVMLPEELGHLTKLRQLDLSNC 632 (1079)
Q Consensus 600 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~ 632 (1079)
+|++|++++|.++.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 344455555555555444555555555555554
No 159
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=5.6e-05 Score=90.45 Aligned_cols=105 Identities=26% Similarity=0.273 Sum_probs=55.3
Q ss_pred CcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccc--cCccccccccccEEeccccccCCcccccCCccccee
Q 044755 527 LRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLL--LPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEIL 604 (1079)
Q Consensus 527 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L 604 (1079)
.+|+.|++.|...... ..|..+-.-++.||.|.+.+-.+.. +-.-..+++||+.||++++.++....+++|++||+|
T Consensus 122 ~nL~~LdI~G~~~~s~-~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSN-GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhc-cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 4566666666332211 0133334456666666666654321 112223566666666666666666666666666666
Q ss_pred eccCCcCcccC--hhhccCCcccEEccccc
Q 044755 605 SFWGSVIVMLP--EELGHLTKLRQLDLSNC 632 (1079)
Q Consensus 605 ~l~~~~l~~lp--~~i~~L~~L~~L~l~~~ 632 (1079)
.+++-.+..-+ ..+.+|++|++||+|..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 66554433221 23456666666666653
No 160
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.46 E-value=0.0016 Score=73.57 Aligned_cols=173 Identities=18% Similarity=0.250 Sum_probs=97.9
Q ss_pred CccccccHHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccC
Q 044755 153 GYEAFESRLCALKSVQNALT----D---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLD 219 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 219 (1079)
...++.|.+..++++.+++. . ...+-+.++|++|+|||++|+.+++... ..| +.+..+.
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~~f---i~V~~se--- 252 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--ATF---LRVVGSE--- 252 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CCE---EEEecch---
Confidence 34456788888888777663 1 1345688999999999999999999764 223 2222211
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccCCCC--CCC
Q 044755 220 IKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD----------------LEAVGIPFG--DDH 281 (1079)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~l~--~~~ 281 (1079)
+.... .+ ........++.....+.+.+|++|+++.... ...+...+. ...
T Consensus 253 ---L~~k~---~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 253 ---LIQKY---LG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred ---hhhhh---cc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 11110 00 0111233344444446788999999764210 000111111 112
Q ss_pred CCcEEEEEecChhhhhh--c---CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 282 KGCKLLLTARDRNVLFR--M---GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 282 ~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
.+.+||.||...+.... . ..+..++++..+.++..++|..+.......++. ....++..+.|.-
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~s 389 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDELS 389 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCCC
Confidence 35678888876554433 1 234689999999999999999887332211111 1344555665543
No 161
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.45 E-value=0.00043 Score=65.46 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=42.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC-cE
Q 044755 179 VGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEE-KI 257 (1079)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~-~~ 257 (1079)
|.|+|++|+||||+|+.+++.... ..+.++.+.-.+. ...........+.+...+.. +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc---------------cccccccccccccccccccccce
Confidence 568999999999999999999751 2355555432100 01112222333444444344 89
Q ss_pred EEEEeCCCCc
Q 044755 258 LIILDNIWKC 267 (1079)
Q Consensus 258 LlvlDdv~~~ 267 (1079)
+|++||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999999764
No 162
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.44 E-value=7.3e-06 Score=92.51 Aligned_cols=123 Identities=22% Similarity=0.145 Sum_probs=58.3
Q ss_pred ccceeEEEecCCCCCCCCCccC-CCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCcc-ccccccccE
Q 044755 504 LKECYAISLRGCSIHELPEGLE-CLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSS-IDLLVNLQT 581 (1079)
Q Consensus 504 ~~~~~~l~l~~~~~~~l~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~ 581 (1079)
|.++..+++..|....+-..++ ++.|++|+++.|.. .+ ..++..+.+|+.|||+.|.+..+|.- ...+. |+.
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~-~~----v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKF-TK----VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQL 236 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhh-hh----hHHHHhcccccccccccchhccccccchhhhh-hee
Confidence 4555555555554433333332 34555555554422 11 12345555555555555555555442 12222 555
Q ss_pred EeccccccCCcccccCCcccceeeccCCcCcccC--hhhccCCcccEEccccc
Q 044755 582 LCLVECMLDDIAIIGKLKNLEILSFWGSVIVMLP--EELGHLTKLRQLDLSNC 632 (1079)
Q Consensus 582 L~L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~ 632 (1079)
|+|++|.++....|.+|++|+.||++.|-+.... .-++.|..|+.|.|.||
T Consensus 237 L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 237 LNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred eeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 5555555555555555555555555555333221 11344445555555554
No 163
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.43 E-value=0.0023 Score=74.42 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=92.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCc
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEK 256 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1079)
..+.|+|..|+|||.|++.+++.......--.++|++. .++..++...+.. .....+.+++. +-
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~--------~~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRD--------GKGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHh--------ccHHHHHHHhh--cC
Confidence 45899999999999999999998753211234566654 3344444433321 01122333443 33
Q ss_pred EEEEEeCCCCcc---ccc-cccCCCCC-CCCCcEEEEEecCh---------hhhhhcCCCceEeCCCCCHHHHHHHHHHH
Q 044755 257 ILIILDNIWKCV---DLE-AVGIPFGD-DHKGCKLLLTARDR---------NVLFRMGSQKNFSIDILNEEEAWRLFKLM 322 (1079)
Q Consensus 257 ~LlvlDdv~~~~---~~~-~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 322 (1079)
=+|||||+.... .|+ .+...+.. ...|..|||||+.. ....++....++++...+.+.-.++++++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 588899997642 222 11111111 12355688888753 23334566778999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 323 ADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
+.... ..--+++++-|++.+.+..
T Consensus 459 a~~r~-l~l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 459 AVQEQ-LNAPPEVLEFIASRISRNI 482 (617)
T ss_pred HHhcC-CCCCHHHHHHHHHhccCCH
Confidence 84321 1112466777777776553
No 164
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.42 E-value=0.0036 Score=73.64 Aligned_cols=173 Identities=20% Similarity=0.238 Sum_probs=95.5
Q ss_pred CccccccHHHHHHHHHH---HhcC---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCH
Q 044755 153 GYEAFESRLCALKSVQN---ALTD---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDI 220 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~---~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 220 (1079)
...++.|.++.++++.+ ++.. ...+-+.++|++|+|||++|+.+++.... . ++.++.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~--~-----~~~i~~---- 121 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--P-----FFSISG---- 121 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--C-----eeeccH----
Confidence 44556777666555544 3332 12345889999999999999999987542 1 222221
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc------------cc----cccCCCC--CCCC
Q 044755 221 KKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD------------LE----AVGIPFG--DDHK 282 (1079)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~------------~~----~l~~~l~--~~~~ 282 (1079)
.++.... .+ ........+++......+.+|++||++.... +. .+...+. ....
T Consensus 122 ~~~~~~~---~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 122 SDFVEMF---VG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHHHHHH---hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 1111111 01 0112234445555546789999999965310 11 1111111 1223
Q ss_pred CcEEEEEecChhhhhh-----cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 283 GCKLLLTARDRNVLFR-----MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 283 gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
+..||.||...+.... ..-+..++++..+.++-.++|+.+.......++ .....+++.+.|.-
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFS 260 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCC
Confidence 4456666765432221 123568999999999999999888743221111 12457888887743
No 165
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.42 E-value=8.2e-05 Score=77.57 Aligned_cols=165 Identities=19% Similarity=0.172 Sum_probs=95.1
Q ss_pred hccCCcceEEEecCccc----cccCcc-------ccccccccEEeccccccCC--c----ccccCCcccceeeccCCcCc
Q 044755 550 FTGMRKLRVVDFTRMQL----LLLPSS-------IDLLVNLQTLCLVECMLDD--I----AIIGKLKNLEILSFWGSVIV 612 (1079)
Q Consensus 550 ~~~l~~Lr~L~L~~~~i----~~lp~~-------i~~L~~L~~L~L~~~~l~~--~----~~i~~L~~L~~L~l~~~~l~ 612 (1079)
+.+.+.||.-++++-.. ..+|+. +-..++|++|+||.|-+.. + .-+..+..|+.|.|.+|.+.
T Consensus 54 L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 54 LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 44555666666665421 123332 2345577777777776533 2 33456777788888777654
Q ss_pred ccC--------------hhhccCCcccEEcccccccccccChh----hhhcccccceeecccccccccCCCCCchhhhcc
Q 044755 613 MLP--------------EELGHLTKLRQLDLSNCFKLKVIAPN----VISRLVRLEELYMSNCFVEWDDEGPNSERINAR 674 (1079)
Q Consensus 613 ~lp--------------~~i~~L~~L~~L~l~~~~~l~~~~~~----~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 674 (1079)
..- +-+.+-++|+++....| ++...+.. .+...+.|+.+.+..|.+.. ......
T Consensus 134 ~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~-------eG~~al 205 (382)
T KOG1909|consen 134 PEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQNGIRP-------EGVTAL 205 (382)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecccccC-------chhHHH
Confidence 221 12344567888887776 56555432 24456788888887776541 112345
Q ss_pred hhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccc
Q 044755 675 LDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQD 730 (1079)
Q Consensus 675 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~ 730 (1079)
...+..+++|+.|+++.|..+.-.......- +..+++|+.|.+..|..
T Consensus 206 ~eal~~~~~LevLdl~DNtft~egs~~Laka--------L~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 206 AEALEHCPHLEVLDLRDNTFTLEGSVALAKA--------LSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHhCCcceeeecccchhhhHHHHHHHHH--------hcccchheeeccccccc
Confidence 6677888888888888765432221111111 12256788888877753
No 166
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.41 E-value=0.0015 Score=75.92 Aligned_cols=157 Identities=16% Similarity=0.158 Sum_probs=94.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEE 255 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1079)
..-+.|+|..|+|||+|++.+++....+..--.++|++... +..++...+... ....+.+.+. +
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~------~~~~~~~~~~~~--------~~~~~~~~~~--~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK------FTNDFVNALRNN--------TMEEFKEKYR--S 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH------HHHHHHHHHHcC--------cHHHHHHHHh--c
Confidence 35688999999999999999999876332123456665542 233333333210 1123344443 3
Q ss_pred cEEEEEeCCCCccc---c-ccccCCCCC-CCCCcEEEEEecChh---------hhhhcCCCceEeCCCCCHHHHHHHHHH
Q 044755 256 KILIILDNIWKCVD---L-EAVGIPFGD-DHKGCKLLLTARDRN---------VLFRMGSQKNFSIDILNEEEAWRLFKL 321 (1079)
Q Consensus 256 ~~LlvlDdv~~~~~---~-~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 321 (1079)
.-+||+||++.... + +.+...+.. ...|..||+|+.... +..++....++++++.+.++-..++++
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 44899999975311 1 122111110 112456888776431 123455567899999999999999999
Q ss_pred HhcCCCCChhhHHHHHHHHHHcCCCchH
Q 044755 322 MADDHVENRELQSTATEVAQACKGLPIA 349 (1079)
Q Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~~glPla 349 (1079)
++.... ..--+++..-|++.++|-.-.
T Consensus 292 ~~~~~~-~~l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 292 KAEEEG-IDLPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHHcC-CCCCHHHHHHHHcCcCCCHHH
Confidence 984321 112246788888888886553
No 167
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.39 E-value=0.0012 Score=75.54 Aligned_cols=150 Identities=13% Similarity=0.160 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCc
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEK 256 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1079)
.-+.|+|..|+|||+|++++++..... --.+++++. .++...+...+... ....+...+ ...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~--------~~~~f~~~~--~~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG--------EMQRFRQFY--RNV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc--------hHHHHHHHc--ccC
Confidence 468899999999999999999987532 233556653 23344444443211 112222223 244
Q ss_pred EEEEEeCCCCccc--c--ccccCCCCC-CCCCcEEEEEecCh---------hhhhhcCCCceEeCCCCCHHHHHHHHHHH
Q 044755 257 ILIILDNIWKCVD--L--EAVGIPFGD-DHKGCKLLLTARDR---------NVLFRMGSQKNFSIDILNEEEAWRLFKLM 322 (1079)
Q Consensus 257 ~LlvlDdv~~~~~--~--~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 322 (1079)
-+|++||+..... + +.+...+.. ...|..||+||... ....++..+..+++.+++.++-..+++++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 5888999876422 1 111111110 01355788888642 22233555678999999999999999998
Q ss_pred hcCCCCChhhHHHHHHHHHHcCC
Q 044755 323 ADDHVENRELQSTATEVAQACKG 345 (1079)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~~~g 345 (1079)
+.... ..--+++..-|++.+.|
T Consensus 284 ~~~~~-~~l~~evl~~la~~~~~ 305 (445)
T PRK12422 284 AEALS-IRIEETALDFLIEALSS 305 (445)
T ss_pred HHHcC-CCCCHHHHHHHHHhcCC
Confidence 83321 11124556667766654
No 168
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.013 Score=63.73 Aligned_cols=193 Identities=15% Similarity=0.159 Sum_probs=109.1
Q ss_pred cccccHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhc--------------CCCCEEEEEEeCCccC
Q 044755 155 EAFESRLCALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQARED--------------KLFDLVVFSEVSQTLD 219 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------~~F~~~~wv~~~~~~~ 219 (1079)
..++|.+...+.+...+..+++ ...-++|..|+||+++|..+++..-.. .|.| ..|+.-....+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecccccc
Confidence 3577999999999999987765 688999999999999999998775322 1222 23332210000
Q ss_pred HHHHHHHHHHHhCC--CccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEEEe-
Q 044755 220 IKKIQQEIAEKLGL--VLEEETGSRRASRLYERLK----KEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLLTA- 290 (1079)
Q Consensus 220 ~~~~~~~i~~~l~~--~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTt- 290 (1079)
-..+-.+-+...+. ........+.+..+.+.+. .+.+-++|+|+++... ....+...+-...+. .+|++|
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~-~fILi~~ 161 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNG-TLILIAP 161 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCC-eEEEEEC
Confidence 00000011111110 0001112233444555543 2567788999987652 233332222222223 455544
Q ss_pred cChhhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 044755 291 RDRNVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTI 353 (1079)
Q Consensus 291 R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 353 (1079)
+...+... ......+++.++++++..+.+.+....... ......++..++|.|..+...
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc----hhHHHHHHHHcCCCHHHHHHH
Confidence 44443333 233468999999999999999987532111 111367889999999765543
No 169
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0047 Score=70.75 Aligned_cols=155 Identities=19% Similarity=0.185 Sum_probs=94.3
Q ss_pred cccccHHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHH
Q 044755 155 EAFESRLCALKSVQNALT------DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIA 228 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 228 (1079)
.+.+|.++.++++++++. +.+-++++.+|++|||||.+|+.++.-.. +.| +-++++.-.|..+|-..--
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkF---fRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKF---FRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--Cce---EEEeccccccHHhhcccce
Confidence 456799999999999985 34568999999999999999999998875 223 3456776666665542221
Q ss_pred HHhCCCccccchHHHHHHHHHHHHc--CCcEEEEEeCCCCcc------------------ccccccCCCCC-CCCCcEEE
Q 044755 229 EKLGLVLEEETGSRRASRLYERLKK--EEKILIILDNIWKCV------------------DLEAVGIPFGD-DHKGCKLL 287 (1079)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~l~~~l~~--~~~~LlvlDdv~~~~------------------~~~~l~~~l~~-~~~gs~ii 287 (1079)
...| ..-.++.+.|++ -.+-|+.+|.|+... +-..+...+.+ .--=|||+
T Consensus 486 TYVG---------AMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 486 TYVG---------AMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred eeec---------cCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 1111 111234444442 366788899887642 11111111111 11246776
Q ss_pred EEecChhhhhh----cCCCceEeCCCCCHHHHHHHHHHHh
Q 044755 288 LTARDRNVLFR----MGSQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 288 vTtR~~~v~~~----~~~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
+...-..+... ...-..|++.+...+|-.++-.++.
T Consensus 557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 54332222111 2334689999999999888877766
No 170
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.36 E-value=0.0046 Score=68.28 Aligned_cols=130 Identities=17% Similarity=0.222 Sum_probs=79.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKE 254 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1079)
....+.|+|..|.|||.|++++.+.......=..+++++. +....+.+..+.. .....+.+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s------e~f~~~~v~a~~~--------~~~~~Fk~~y--- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS------EDFTNDFVKALRD--------NEMEKFKEKY--- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH------HHHHHHHHHHHHh--------hhHHHHHHhh---
Confidence 3679999999999999999999998763211123444322 2233333332211 1122222222
Q ss_pred CcEEEEEeCCCCcc---ccc----cccCCCCCCCCCcEEEEEecCh---------hhhhhcCCCceEeCCCCCHHHHHHH
Q 044755 255 EKILIILDNIWKCV---DLE----AVGIPFGDDHKGCKLLLTARDR---------NVLFRMGSQKNFSIDILNEEEAWRL 318 (1079)
Q Consensus 255 ~~~LlvlDdv~~~~---~~~----~l~~~l~~~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 318 (1079)
.-=++++||++-.. .|+ .+...+.. .|-.||+|++.. ....++..+-++++.+.+.+....+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 22378899997632 222 12222222 234899998643 3334566778999999999999999
Q ss_pred HHHHh
Q 044755 319 FKLMA 323 (1079)
Q Consensus 319 f~~~~ 323 (1079)
+.+++
T Consensus 253 L~kka 257 (408)
T COG0593 253 LRKKA 257 (408)
T ss_pred HHHHH
Confidence 99988
No 171
>CHL00176 ftsH cell division protein; Validated
Probab=97.34 E-value=0.003 Score=75.28 Aligned_cols=170 Identities=18% Similarity=0.264 Sum_probs=96.6
Q ss_pred cccccHHHHHH---HHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHH
Q 044755 155 EAFESRLCALK---SVQNALTDV---------NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKK 222 (1079)
Q Consensus 155 ~~~~gr~~~~~---~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 222 (1079)
.++.|.++.++ ++++++.+. ..+-|.++|++|+|||++|+.++..... . |+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~--p-----~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV--P-----FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--C-----eeeccHH----H
Confidence 34556655444 445554432 2356889999999999999999987542 1 2222211 1
Q ss_pred HHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc------------c----cccccCCCC--CCCCCc
Q 044755 223 IQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV------------D----LEAVGIPFG--DDHKGC 284 (1079)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~l~--~~~~gs 284 (1079)
+.... .+ ........+++......+++|++||++... . +..+...+. ....+.
T Consensus 252 f~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11100 01 011223444555555788999999996531 0 112211111 123455
Q ss_pred EEEEEecChhhhhh--c---CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCC
Q 044755 285 KLLLTARDRNVLFR--M---GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGL 346 (1079)
Q Consensus 285 ~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 346 (1079)
.||.||...+.... . .-+..+.++..+.++-.++++.++......+ ......+++.+.|.
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 67777766543332 1 2346789999999999999998884422122 23356788888773
No 172
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.0042 Score=68.04 Aligned_cols=154 Identities=13% Similarity=0.104 Sum_probs=88.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcC--------------------CCCEEEEEEeCCccCHHHHHHHHHHHhCCCc
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDK--------------------LFDLVVFSEVSQTLDIKKIQQEIAEKLGLVL 235 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 235 (1079)
...+.++|+.|+||||+|+.+++..-... |.|. .|+.-....
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~~~~~~----------------- 83 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDN-FVLEPEEAD----------------- 83 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEeccCCC-----------------
Confidence 34677999999999999999988764321 2221 222111000
Q ss_pred cccchHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEEEecChhh-hhh-cCCCceEeC
Q 044755 236 EEETGSRRASRLYERLK----KEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLTARDRNV-LFR-MGSQKNFSI 307 (1079)
Q Consensus 236 ~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~-~~~~~~~~l 307 (1079)
.....+.+..+.+.+. .+++-++|+|+++.. .....+...+-....++.+|+||.+... ... ......+.+
T Consensus 84 -~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~ 162 (328)
T PRK05707 84 -KTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC 162 (328)
T ss_pred -CCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeC
Confidence 0011122223333332 234445577999875 2333333333333346677777776533 322 233457999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 044755 308 DILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTI 353 (1079)
Q Consensus 308 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 353 (1079)
.+++.+++.+.+.+..... ..+.+..++..++|.|..+..+
T Consensus 163 ~~~~~~~~~~~L~~~~~~~-----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 163 PLPSNEESLQWLQQALPES-----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CCcCHHHHHHHHHHhcccC-----ChHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999988764211 1234667889999999765443
No 173
>PRK10536 hypothetical protein; Provisional
Probab=97.32 E-value=0.0026 Score=65.42 Aligned_cols=55 Identities=22% Similarity=0.162 Sum_probs=40.9
Q ss_pred ccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEE
Q 044755 154 YEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVV 210 (1079)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~ 210 (1079)
..++.+|......++.++.+. .+|.+.|.+|+|||+||.++..+.-..+.|+.++
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 344567788888888888764 4999999999999999999988632223455444
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.32 E-value=0.00065 Score=65.15 Aligned_cols=90 Identities=23% Similarity=0.221 Sum_probs=51.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCc
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEK 256 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1079)
..+.|+|++|+||||+|+.++....... ..+++++.+........... ...................+.......+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999998875322 24666665544332222211 11111111112222233344444443345
Q ss_pred EEEEEeCCCCccc
Q 044755 257 ILIILDNIWKCVD 269 (1079)
Q Consensus 257 ~LlvlDdv~~~~~ 269 (1079)
.+|++|+++....
T Consensus 80 ~viiiDei~~~~~ 92 (148)
T smart00382 80 DVLILDEITSLLD 92 (148)
T ss_pred CEEEEECCcccCC
Confidence 9999999988644
No 175
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.32 E-value=0.0018 Score=78.63 Aligned_cols=157 Identities=15% Similarity=0.177 Sum_probs=92.3
Q ss_pred ccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcC-C---CCEEEEEEeCCccCHHHHHHHHHH
Q 044755 154 YEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDK-L---FDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~---F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
..+++||+.++.++++.|......-+.++|.+|+|||++|+.+++...... . .++.+|.. +...++.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~lla---- 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSLLA---- 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHHhc----
Confidence 346789999999999998865445667899999999999999998753221 1 24444421 1111110
Q ss_pred HhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc--------c--ccccccCCCCCCCCCcEEEEEecChhhhhh-
Q 044755 230 KLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC--------V--DLEAVGIPFGDDHKGCKLLLTARDRNVLFR- 298 (1079)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--------~--~~~~l~~~l~~~~~gs~iivTtR~~~v~~~- 298 (1079)
+.... .........+.+.+.+..+.+|++|++... . +...+..++... ..-+||-+|...+....
T Consensus 256 --G~~~~-Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~~~ 331 (758)
T PRK11034 256 --GTKYR-GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIF 331 (758)
T ss_pred --ccchh-hhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHHHh
Confidence 10000 012233445555665557789999999753 1 111122222222 23455555554432111
Q ss_pred ------cCCCceEeCCCCCHHHHHHHHHHHh
Q 044755 299 ------MGSQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 299 ------~~~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
......+.++..+.+++.++++...
T Consensus 332 ~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 332 EKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1122479999999999999998765
No 176
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.31 E-value=0.00087 Score=79.02 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=42.5
Q ss_pred ccCCccccccHHHHHHHHHHHhcCC-----CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 150 SRKGYEAFESRLCALKSVQNALTDV-----NVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.|....+++|.++.++++..|+... ..+++.++|++|+||||+++.++....
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3556677889999999999998742 345799999999999999999997754
No 177
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.27 E-value=0.0043 Score=77.68 Aligned_cols=157 Identities=13% Similarity=0.131 Sum_probs=91.0
Q ss_pred CccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCEEEE-EEeCCccCHHHHHHHH
Q 044755 153 GYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKL----FDLVVF-SEVSQTLDIKKIQQEI 227 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~w-v~~~~~~~~~~~~~~i 227 (1079)
...+++||++++.+++..|......-+.++|.+|+|||++|+.+++....... ....+| ++++ .++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l~a-- 242 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------ALIA-- 242 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HHhh--
Confidence 44568999999999999998665566678999999999999999987642211 122233 2221 1110
Q ss_pred HHHhCCCccccchHHHHHHHHHHHHc-CCcEEEEEeCCCCcc---------ccccccCCCCCCCCCcEEEEEecChhhhh
Q 044755 228 AEKLGLVLEEETGSRRASRLYERLKK-EEKILIILDNIWKCV---------DLEAVGIPFGDDHKGCKLLLTARDRNVLF 297 (1079)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~---------~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 297 (1079)
+.... .........+.+.+.+ +++.+|++|++.... +...+..+....+ .-++|-+|...+.-.
T Consensus 243 ----~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 243 ----GAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLDEYRK 316 (852)
T ss_pred ----cchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHHHHHH
Confidence 00000 0112234445555543 468999999997542 1112222222221 234555555443211
Q ss_pred h-------cCCCceEeCCCCCHHHHHHHHHHHh
Q 044755 298 R-------MGSQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 298 ~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
. ......+.++..+.++...++....
T Consensus 317 ~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 317 YIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 0 1222467899999999999987765
No 178
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.25 E-value=0.013 Score=59.70 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=38.5
Q ss_pred CccccccHHHHHHHHHHHh----cCCCceEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044755 153 GYEAFESRLCALKSVQNAL----TDVNVSIVGVYGMGGIGKTTLVKEVARQARED 203 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (1079)
....++|-+..++.+++-. ......-+-++|..|+|||++++++.+....+
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 4456778888877776543 23445577889999999999999999887643
No 179
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=9.9e-05 Score=74.89 Aligned_cols=81 Identities=25% Similarity=0.320 Sum_probs=41.5
Q ss_pred ccCCcceEEEecCccccc---cCccccccccccEEeccccccCC-cccc-cCCcccceeeccCCcC--cccChhhccCCc
Q 044755 551 TGMRKLRVVDFTRMQLLL---LPSSIDLLVNLQTLCLVECMLDD-IAII-GKLKNLEILSFWGSVI--VMLPEELGHLTK 623 (1079)
Q Consensus 551 ~~l~~Lr~L~L~~~~i~~---lp~~i~~L~~L~~L~L~~~~l~~-~~~i-~~L~~L~~L~l~~~~l--~~lp~~i~~L~~ 623 (1079)
..+..++.|||.+|.|.. +-.-+.+|++|++|+|+.|.+.. +... -.+.+|++|-|.|+.+ +.....+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 345566666666666543 22223456666666666666554 3333 2455566666655533 222333444444
Q ss_pred ccEEcccc
Q 044755 624 LRQLDLSN 631 (1079)
Q Consensus 624 L~~L~l~~ 631 (1079)
++.|.++.
T Consensus 148 vtelHmS~ 155 (418)
T KOG2982|consen 148 VTELHMSD 155 (418)
T ss_pred hhhhhhcc
Confidence 44444444
No 180
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.24 E-value=2.3e-05 Score=93.18 Aligned_cols=121 Identities=18% Similarity=0.177 Sum_probs=61.6
Q ss_pred CcccceEeeccccccccccccccccccCCCceeeccCC-CCcceecccCCcCCCCCCCCccceeeccccccccccccCcC
Q 044755 717 IKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNN-PDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 795 (1079)
Q Consensus 717 l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~ 795 (1079)
.++|+.|.+.++....+..........++|+.|++.++ ...... ..........+++|+.|++..+..+.+......
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLS--PLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccc--hhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 34555555555543332110011134567777777652 111100 000011224456777777777654433311111
Q ss_pred CcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeecccccc
Q 044755 796 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNI 840 (1079)
Q Consensus 796 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l 840 (1079)
...+++|+.|.+.+|..+++..-....+.+++|++|+++.|..+
T Consensus 265 -~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 -ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred -HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 12367888888777777655444345566777888888877766
No 181
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.23 E-value=0.012 Score=59.52 Aligned_cols=180 Identities=19% Similarity=0.206 Sum_probs=104.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEe-CCccCHHHHHHHHHHHhCCCcccc---chHHHHHHHH
Q 044755 173 DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEV-SQTLDIKKIQQEIAEKLGLVLEEE---TGSRRASRLY 248 (1079)
Q Consensus 173 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~l~ 248 (1079)
.++.+++.|+|.-|.|||.+.+........+ .++-|.+ .+..+...+...++..+..+.... ........+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 3455799999999999999999555444311 1222333 345667778888887776522111 1112233444
Q ss_pred HHHHcCCc-EEEEEeCCCCc--cccccccCCCC---CCCCCcEEEEEecCh-------hhhhhcC--CCceEeCCCCCHH
Q 044755 249 ERLKKEEK-ILIILDNIWKC--VDLEAVGIPFG---DDHKGCKLLLTARDR-------NVLFRMG--SQKNFSIDILNEE 313 (1079)
Q Consensus 249 ~~l~~~~~-~LlvlDdv~~~--~~~~~l~~~l~---~~~~gs~iivTtR~~-------~v~~~~~--~~~~~~l~~L~~~ 313 (1079)
...++++| ..+++||.... ...+.++.... +...--+|+..-..+ .+..... ..-.|++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 44556788 99999998764 22332221111 111112344433221 0111111 1123899999999
Q ss_pred HHHHHHHHHhcCCCCC--hhhHHHHHHHHHHcCCCchHHHHHHHH
Q 044755 314 EAWRLFKLMADDHVEN--RELQSTATEVAQACKGLPIALTTIARA 356 (1079)
Q Consensus 314 ~~~~lf~~~~~~~~~~--~~~~~~~~~i~~~~~glPlai~~~~~~ 356 (1079)
+...+++.+.+....+ ---.+....|..+..|.|.+|..++..
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 9999999988432222 122456778999999999999877653
No 182
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.23 E-value=0.0042 Score=77.35 Aligned_cols=157 Identities=11% Similarity=0.094 Sum_probs=89.9
Q ss_pred CccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCE-EEEEEeCCccCHHHHHHHH
Q 044755 153 GYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKL----FDL-VVFSEVSQTLDIKKIQQEI 227 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~-~~wv~~~~~~~~~~~~~~i 227 (1079)
...+++||+.++.++++.|......-+.++|.+|+|||++|+.++........ ... +++++.+.- +..
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~ag- 248 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------VAG- 248 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------hhc-
Confidence 44568999999999999998666667779999999999999999988642211 122 233333321 100
Q ss_pred HHHhCCCccccchHHHHHHHHHHHH-cCCcEEEEEeCCCCcc---------ccccccCCCCCCCCCcEEEEEecChhhhh
Q 044755 228 AEKLGLVLEEETGSRRASRLYERLK-KEEKILIILDNIWKCV---------DLEAVGIPFGDDHKGCKLLLTARDRNVLF 297 (1079)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~---------~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 297 (1079)
.... ..-......+++.+. .+++.+|++|++.... +-..+..|....+ .-++|-+|...+...
T Consensus 249 -----~~~~-g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 249 -----AKYR-GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEYRQ 321 (857)
T ss_pred -----cchh-hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHHHH
Confidence 0000 011223344444443 2578999999987642 1122222322221 345665555444211
Q ss_pred ------h-cCCCceEeCCCCCHHHHHHHHHHHh
Q 044755 298 ------R-MGSQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 298 ------~-~~~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
. ......+.+...+.++...+++...
T Consensus 322 ~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 322 YIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1 1112256677778899999887655
No 183
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.20 E-value=0.006 Score=74.81 Aligned_cols=155 Identities=17% Similarity=0.193 Sum_probs=85.8
Q ss_pred cccccHHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHH
Q 044755 155 EAFESRLCALKSVQNALT------DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIA 228 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 228 (1079)
..++|.++.++++++++. .....++.++|++|+||||+|+.++.... ..| +-++.+...+..++...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~~~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--RKY---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--CCE---EEEEcCCCCCHHHhccchh
Confidence 346799999999998886 23456899999999999999999998764 223 2244444444433322211
Q ss_pred HHhCCCccccchHHHHHHHHHHHHc--CCcEEEEEeCCCCccc------cccccCCCC---------------CCCCCcE
Q 044755 229 EKLGLVLEEETGSRRASRLYERLKK--EEKILIILDNIWKCVD------LEAVGIPFG---------------DDHKGCK 285 (1079)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~l~~~l~~--~~~~LlvlDdv~~~~~------~~~l~~~l~---------------~~~~gs~ 285 (1079)
...+. .. ..+.+.+.+ ...-++++|.++.... ...+...+. -.-.+.-
T Consensus 397 ~~~g~-----~~----G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 397 TYIGS-----MP----GKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred ccCCC-----CC----cHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 11110 00 112222221 1345788999875421 011111111 1113344
Q ss_pred EEEEecChhhhhh-cCCCceEeCCCCCHHHHHHHHHHHh
Q 044755 286 LLLTARDRNVLFR-MGSQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 286 iivTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
+|.|+....+... .+....+++.+++.++-.++.+++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 4455544332222 2233578999999888888877765
No 184
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0058 Score=68.71 Aligned_cols=171 Identities=15% Similarity=0.232 Sum_probs=99.4
Q ss_pred ccccccHHHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHH
Q 044755 154 YEAFESRLCALKSVQNALT---D---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIK 221 (1079)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 221 (1079)
...+.|.+..+.++.+++. . ...+=|.++|++|.|||.||++++.+..+. |+.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch----
Confidence 4456788888777776654 1 135678899999999999999999988643 3333322
Q ss_pred HHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc---cc----------ccccCCC---C-CCCCCc
Q 044755 222 KIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV---DL----------EAVGIPF---G-DDHKGC 284 (1079)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~~----------~~l~~~l---~-~~~~gs 284 (1079)
+|..... + ..++.+..+++.-...-++++++|+++... +| .++...+ . ....|-
T Consensus 258 ----eivSGvS----G-ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 258 ----EIVSGVS----G-ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred ----hhhcccC----c-ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 2222211 1 223445666777666799999999998641 11 1111111 1 111233
Q ss_pred EEEE---EecChhhhhhc----CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCC
Q 044755 285 KLLL---TARDRNVLFRM----GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGL 346 (1079)
Q Consensus 285 ~iiv---TtR~~~v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 346 (1079)
.|+| |+|...+-..+ .-++.|.+.--+++.-.++++..+..-.-..++. .++|++..-|.
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d--~~qlA~lTPGf 395 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD--FKQLAKLTPGF 395 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC--HHHHHhcCCCc
Confidence 3444 55554432221 2346788888888888888877773211111111 45677766664
No 185
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.005 Score=72.52 Aligned_cols=176 Identities=20% Similarity=0.208 Sum_probs=108.6
Q ss_pred ccccccHHHH---HHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHH
Q 044755 154 YEAFESRLCA---LKSVQNALTDV---------NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIK 221 (1079)
Q Consensus 154 ~~~~~gr~~~---~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 221 (1079)
..++.|-++. +.++++.|.++ -++=+-++|++|+|||-||++++-...+. |++++..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH----
Confidence 3456676655 45556666532 25678899999999999999999887643 4555542
Q ss_pred HHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc-----------------cccccCCCCCC--CC
Q 044755 222 KIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD-----------------LEAVGIPFGDD--HK 282 (1079)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-----------------~~~l~~~l~~~--~~ 282 (1079)
+.. ++... ....++..++...++..+++|.+|+++...- +.++..-+... ..
T Consensus 379 EFv-E~~~g--------~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 EFV-EMFVG--------VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred HHH-HHhcc--------cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 111 11111 1134556677777778999999999876421 11111111111 12
Q ss_pred CcEEEEEecChhhhhh--c---CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHH
Q 044755 283 GCKLLLTARDRNVLFR--M---GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIAL 350 (1079)
Q Consensus 283 gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 350 (1079)
+--++-+|...++... + .-++.+.++.-+.....++|.-++.......+..++++ |+...-|.+=|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 2334446665555442 2 23568899999999999999999854433345556666 999988887553
No 186
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.16 E-value=9.2e-05 Score=66.34 Aligned_cols=90 Identities=17% Similarity=0.180 Sum_probs=66.0
Q ss_pred ccCCcceEEEecCccccccCccccc-cccccEEeccccccCC-cccccCCcccceeeccCCcCcccChhhccCCcccEEc
Q 044755 551 TGMRKLRVVDFTRMQLLLLPSSIDL-LVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLD 628 (1079)
Q Consensus 551 ~~l~~Lr~L~L~~~~i~~lp~~i~~-L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 628 (1079)
.+..+|...+|++|.++++|..+.. .+.+.+|++.+|.+++ |..+..++.|+.|+++.|.+...|..|..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 4556677778888888888777653 4477778888887777 7667777888888888887777777777778888887
Q ss_pred ccccccccccChh
Q 044755 629 LSNCFKLKVIAPN 641 (1079)
Q Consensus 629 l~~~~~l~~~~~~ 641 (1079)
..++ ....+|.+
T Consensus 130 s~~n-a~~eid~d 141 (177)
T KOG4579|consen 130 SPEN-ARAEIDVD 141 (177)
T ss_pred CCCC-ccccCcHH
Confidence 7775 45555554
No 187
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.015 Score=63.03 Aligned_cols=173 Identities=15% Similarity=0.112 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcC-----------------CCCEEEEEEeCCccCHHH
Q 044755 161 LCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDK-----------------LFDLVVFSEVSQTLDIKK 222 (1079)
Q Consensus 161 ~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------------~F~~~~wv~~~~~~~~~~ 222 (1079)
....+.+...+..++++ .+.++|+.|+||+++|..+++..-.+. |.| ..|+.......-.
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~~~- 87 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRTGD- 87 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcccc-
Confidence 34567777777766655 688999999999999999887653221 122 1222110000000
Q ss_pred HHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEEEecCh-hh
Q 044755 223 IQQEIAEKLGLVLEEETGSRRASRLYERLK----KEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLLTARDR-NV 295 (1079)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~v 295 (1079)
........+.+..+.+.+. .+++=++|+|+++... .-..+...+-....++.+|++|.+. .+
T Consensus 88 -----------k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~l 156 (319)
T PRK08769 88 -----------KLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARL 156 (319)
T ss_pred -----------cccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhC
Confidence 0000011222333333332 2566789999998752 2222222222223466677766654 33
Q ss_pred hhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 044755 296 LFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTI 353 (1079)
Q Consensus 296 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 353 (1079)
... ......+.+.+++.+++.+.+.+.. .. ...+..++..++|.|+.+..+
T Consensus 157 LpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 157 PATIRSRCQRLEFKLPPAHEALAWLLAQG---VS----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred chHHHhhheEeeCCCcCHHHHHHHHHHcC---CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 332 2334578999999999988887541 11 223667899999999866443
No 188
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.10 E-value=6.8e-05 Score=67.15 Aligned_cols=102 Identities=22% Similarity=0.297 Sum_probs=68.5
Q ss_pred CcceEEEecCccccccCc---cccccccccEEeccccccCC-ccccc-CCcccceeeccCCcCcccChhhccCCcccEEc
Q 044755 554 RKLRVVDFTRMQLLLLPS---SIDLLVNLQTLCLVECMLDD-IAIIG-KLKNLEILSFWGSVIVMLPEELGHLTKLRQLD 628 (1079)
Q Consensus 554 ~~Lr~L~L~~~~i~~lp~---~i~~L~~L~~L~L~~~~l~~-~~~i~-~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 628 (1079)
+.+..+||++|.+-.+++ .+....+|...+|++|.+.. |+.+. +.+.+.+|++++|.+.++|.++..++.|+.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 345567777776654444 34566677777888888776 55444 44577788888888888888887888888888
Q ss_pred ccccccccccChhhhhcccccceeecccc
Q 044755 629 LSNCFKLKVIAPNVISRLVRLEELYMSNC 657 (1079)
Q Consensus 629 l~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 657 (1079)
++.| .+...|.- +..|.+|-.|+..++
T Consensus 107 l~~N-~l~~~p~v-i~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 107 LRFN-PLNAEPRV-IAPLIKLDMLDSPEN 133 (177)
T ss_pred cccC-ccccchHH-HHHHHhHHHhcCCCC
Confidence 8776 56555543 555666666665544
No 189
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.08 E-value=0.04 Score=59.78 Aligned_cols=162 Identities=12% Similarity=0.133 Sum_probs=95.0
Q ss_pred HHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhc-------------------CCCCEEEEEEe--CCccC
Q 044755 162 CALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQARED-------------------KLFDLVVFSEV--SQTLD 219 (1079)
Q Consensus 162 ~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~~--~~~~~ 219 (1079)
...+++.+.+..+++ ..+-++|+.|+||+++|+.+++..-.. .|.|....... ++...
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~ 89 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSIT 89 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCC
Confidence 445667777766554 478899999999999999998764321 22332211111 11111
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEEEecCh
Q 044755 220 IKKIQQEIAEKLGLVLEEETGSRRASRLYERLK----KEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLTARDR 293 (1079)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~ 293 (1079)
+ +.+..+.+.+. .+++=++|+|+++.. .....+...+-....++.+|++|.+.
T Consensus 90 v---------------------dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 90 V---------------------EQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred H---------------------HHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 1 22222323322 245568889998875 23333333333333456666665554
Q ss_pred -hhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 044755 294 -NVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTI 353 (1079)
Q Consensus 294 -~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 353 (1079)
.+... ......+.+.+++.+++.+.+.+.... .+..+++.++|.|+.+..+
T Consensus 149 ~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~~---------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 149 KRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGIT---------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hhChHHHHhcceeEeCCCCCHHHHHHHHHHcCCc---------hHHHHHHHcCCCHHHHHHH
Confidence 44433 233457899999999999888664211 1456788999999876543
No 190
>PRK08118 topology modulation protein; Reviewed
Probab=97.08 E-value=0.00033 Score=68.83 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCCEEEE
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQARED-KLFDLVVF 211 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 211 (1079)
..|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987654 45777776
No 191
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.015 Score=64.35 Aligned_cols=157 Identities=20% Similarity=0.317 Sum_probs=91.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHH---
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERL--- 251 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l--- 251 (1079)
...-+.+.|++|+|||+||..++.... |..+=-++... +. | -++......+.+.+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSpe~------mi-------G-----~sEsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISPED------MI-------G-----LSESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeChHH------cc-------C-----ccHHHHHHHHHHHHHHh
Confidence 355667899999999999999987643 65443322211 10 1 11122222222222
Q ss_pred HcCCcEEEEEeCCCCccccccccCCCCC-------------CCCCcE--EEEEecChhhhhhcCC----CceEeCCCCCH
Q 044755 252 KKEEKILIILDNIWKCVDLEAVGIPFGD-------------DHKGCK--LLLTARDRNVLFRMGS----QKNFSIDILNE 312 (1079)
Q Consensus 252 ~~~~~~LlvlDdv~~~~~~~~l~~~l~~-------------~~~gs~--iivTtR~~~v~~~~~~----~~~~~l~~L~~ 312 (1079)
-+..--.||+||++...+|-.++..|.. ...|-| |+-||....|...|+- ..+|.++.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 2346678999999998888777665422 223445 4447777788777653 45788988887
Q ss_pred -HHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 044755 313 -EEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIARAL 357 (1079)
Q Consensus 313 -~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 357 (1079)
++..+.+...- ...+.+.+.++.+...+| +-..|+-+-.++
T Consensus 675 ~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 675 GEQLLEVLEELN--IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred hHHHHHHHHHcc--CCCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 66766666543 112334455566666666 223344444443
No 192
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.016 Score=64.02 Aligned_cols=145 Identities=14% Similarity=0.139 Sum_probs=85.6
Q ss_pred ccc-HHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcC--------------------CCCEEEEEEe
Q 044755 157 FES-RLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDK--------------------LFDLVVFSEV 214 (1079)
Q Consensus 157 ~~g-r~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~~ 214 (1079)
++| .+...+.+...+..++++ ..-++|+.|+||||+|+.+.+..-... |.|..+....
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 345 667778888888766654 568999999999999999987753221 2332222111
Q ss_pred CCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEE
Q 044755 215 SQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLK----KEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLL 288 (1079)
Q Consensus 215 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iiv 288 (1079)
+....+ +.+..+.+.+. .+.+=++|+|+++... .-..+...+-....++.+|+
T Consensus 87 ~~~i~i---------------------d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il 145 (329)
T PRK08058 87 GQSIKK---------------------DQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAIL 145 (329)
T ss_pred cccCCH---------------------HHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEE
Confidence 111111 22222222222 2455578899987642 23334333433345667777
Q ss_pred EecChh-hhhh-cCCCceEeCCCCCHHHHHHHHHHH
Q 044755 289 TARDRN-VLFR-MGSQKNFSIDILNEEEAWRLFKLM 322 (1079)
Q Consensus 289 TtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~ 322 (1079)
+|.+.. +... ......+++.+++.++....+.+.
T Consensus 146 ~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 146 LTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 776543 3322 233467999999999998877653
No 193
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.02 E-value=0.0084 Score=60.13 Aligned_cols=170 Identities=21% Similarity=0.315 Sum_probs=100.8
Q ss_pred cccccHHHHHHH---HHHHhcCC------CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHH
Q 044755 155 EAFESRLCALKS---VQNALTDV------NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQ 225 (1079)
Q Consensus 155 ~~~~gr~~~~~~---l~~~l~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 225 (1079)
.+++|.++.+.+ |++.|.++ ..+-|..+|++|+|||.+|+++++..++. | + .+. ..+++.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~---l--~vk----at~liG 189 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L---L--LVK----ATELIG 189 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e---E--Eec----hHHHHH
Confidence 456787766544 66777643 47899999999999999999999987632 2 2 221 122222
Q ss_pred HHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc----------c----cccccCCCCC--CCCCcEEEEE
Q 044755 226 EIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV----------D----LEAVGIPFGD--DHKGCKLLLT 289 (1079)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------~----~~~l~~~l~~--~~~gs~iivT 289 (1079)
+..| +...++..++++-.+.-++++++|.++... + ...+..-+.. .+.|.-.|-.
T Consensus 190 ---ehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 190 ---EHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred ---HHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 2222 223456667777777799999999887531 1 1122222211 2335444555
Q ss_pred ecChhhhhh---cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCC
Q 044755 290 ARDRNVLFR---MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGL 346 (1079)
Q Consensus 290 tR~~~v~~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 346 (1079)
|.+.+.... ..-...|+...-+++|-.+++...+..-.-+- ..-.+.++++.+|+
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv--~~~~~~~~~~t~g~ 318 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV--DADLRYLAAKTKGM 318 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc--ccCHHHHHHHhCCC
Confidence 555544332 12235688888889999999998883311111 11155667777764
No 194
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.98 E-value=0.0067 Score=66.15 Aligned_cols=102 Identities=11% Similarity=0.144 Sum_probs=67.0
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCE-EEEEEeCC-ccCHHHHHHHHHHHhCCCccccch
Q 044755 164 LKSVQNALTD-VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDL-VVFSEVSQ-TLDIKKIQQEIAEKLGLVLEEETG 240 (1079)
Q Consensus 164 ~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~ 240 (1079)
..++++.+.. ..-..+.|+|.+|+|||||++.+++..... +-+. ++|+.+.+ ..++.++.+.+...+.....+...
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 3457777762 333567999999999999999999877533 3344 46766654 457888888888766654322221
Q ss_pred HH------HHHHHHHHHH-cCCcEEEEEeCCCC
Q 044755 241 SR------RASRLYERLK-KEEKILIILDNIWK 266 (1079)
Q Consensus 241 ~~------~~~~l~~~l~-~~~~~LlvlDdv~~ 266 (1079)
.. ....+.+++. ++++++||+|++..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 11 1223333333 58999999999854
No 195
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.95 E-value=0.0088 Score=68.91 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=83.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEE 255 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1079)
.+-|-++|++|+|||.+|+.+++..... | +-++.+ .++... .| . .......+++......
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~------~l~~~~---vG-----e-se~~l~~~f~~A~~~~ 318 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVG------KLFGGI---VG-----E-SESRMRQMIRIAEALS 318 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhH------Hhcccc---cC-----h-HHHHHHHHHHHHHhcC
Confidence 4678899999999999999999886521 2 222221 111100 00 0 1122334444444468
Q ss_pred cEEEEEeCCCCccc----c----------ccccCCCCCCCCCcEEEEEecChhhhh-h----cCCCceEeCCCCCHHHHH
Q 044755 256 KILIILDNIWKCVD----L----------EAVGIPFGDDHKGCKLLLTARDRNVLF-R----MGSQKNFSIDILNEEEAW 316 (1079)
Q Consensus 256 ~~LlvlDdv~~~~~----~----------~~l~~~l~~~~~gs~iivTtR~~~v~~-~----~~~~~~~~l~~L~~~~~~ 316 (1079)
+++|++|+++.... . ..+...+.....+.-||.||...+... . ..-+..+.++.-+.++-.
T Consensus 319 P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~ 398 (489)
T CHL00195 319 PCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEERE 398 (489)
T ss_pred CcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHH
Confidence 99999999975311 0 011111112223344555776543222 1 133567899999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 317 RLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 317 ~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
++|+.+.........-......+++.+.|.-
T Consensus 399 ~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 399 KIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 9999887432111000112456777777654
No 196
>PRK08116 hypothetical protein; Validated
Probab=96.93 E-value=0.0026 Score=67.72 Aligned_cols=102 Identities=20% Similarity=0.187 Sum_probs=59.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCc
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEK 256 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1079)
..+.++|..|+|||.||.++++....+ -..+++++ ..+++..+........ ......+.+.+. +-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~-~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG-----KEDENEIIRSLV-NAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc-----cccHHHHHHHhc-CCC
Confidence 458899999999999999999997643 34466665 3445555544432111 111223445554 233
Q ss_pred EEEEEeCCCC--cccccc--ccCCCCC-CCCCcEEEEEecCh
Q 044755 257 ILIILDNIWK--CVDLEA--VGIPFGD-DHKGCKLLLTARDR 293 (1079)
Q Consensus 257 ~LlvlDdv~~--~~~~~~--l~~~l~~-~~~gs~iivTtR~~ 293 (1079)
||||||+.. ..+|.. +...+.. -..|..+|+||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 899999943 344432 2111111 12355688888754
No 197
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.91 E-value=0.037 Score=60.22 Aligned_cols=176 Identities=11% Similarity=0.066 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCC------
Q 044755 162 CALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLV------ 234 (1079)
Q Consensus 162 ~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~------ 234 (1079)
...+.+...+..+++ ...-+.|+.|+||+++|+.++...-.+..... .....-...+.+...-..+
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 345667777776654 46678999999999999999877533211100 0000001111111000000
Q ss_pred -ccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEEEecCh-hhhhh-cCCCceE
Q 044755 235 -LEEETGSRRASRLYERLK----KEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLLTARDR-NVLFR-MGSQKNF 305 (1079)
Q Consensus 235 -~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~~~ 305 (1079)
.......+.+..+.+.+. .+++=++|+|+++... ....+...+-....++.+|++|.+. .+... ......+
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 000112233333434432 2566688899998752 3333333333334456666666654 33333 2334589
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHH
Q 044755 306 SIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIAL 350 (1079)
Q Consensus 306 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 350 (1079)
.+.+++.++..+.+.+..+.. ...+...++.++|.|..+
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 999999999998888765221 112566788899999643
No 198
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.91 E-value=0.046 Score=60.29 Aligned_cols=191 Identities=17% Similarity=0.225 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHH-HHHHHHhhhcCCCCEEEEEEeCCc---cCHHHHHHHHHHHhCCCc
Q 044755 160 RLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLV-KEVARQAREDKLFDLVVFSEVSQT---LDIKKIQQEIAEKLGLVL 235 (1079)
Q Consensus 160 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~~~l~~~~ 235 (1079)
|.+..++|..||.+..-..|.|.|+-|.||+.|+ .++.++.+ .++.++|.+- .+-...++.++.++|...
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 4567899999999888889999999999999999 77776532 2778877643 345566667777766410
Q ss_pred -----------------------c--ccchHHHHHHHHHH----HH-------------------------cCCcEEEEE
Q 044755 236 -----------------------E--EETGSRRASRLYER----LK-------------------------KEEKILIIL 261 (1079)
Q Consensus 236 -----------------------~--~~~~~~~~~~l~~~----l~-------------------------~~~~~Llvl 261 (1079)
. .++.+.+...++.. |+ .+++-+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 0 01112221111110 00 124679999
Q ss_pred eCCCCc-----------cccccccCCCCCCCCCcEEEEEecChhhhhh----c--CCCceEeCCCCCHHHHHHHHHHHhc
Q 044755 262 DNIWKC-----------VDLEAVGIPFGDDHKGCKLLLTARDRNVLFR----M--GSQKNFSIDILNEEEAWRLFKLMAD 324 (1079)
Q Consensus 262 Ddv~~~-----------~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~----~--~~~~~~~l~~L~~~~~~~lf~~~~~ 324 (1079)
|+.... .+|... +.. .+=..||++|-+...... + ...+.+.|.-.+.+.|..+..++..
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~---Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAAS---LVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHH---HHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 998653 234432 222 234578888877655443 2 3346899999999999999999884
Q ss_pred CCCCC-------------------hhhHHHHHHHHHHcCCCchHHHHHHHHHhcC
Q 044755 325 DHVEN-------------------RELQSTATEVAQACKGLPIALTTIARALRNK 360 (1079)
Q Consensus 325 ~~~~~-------------------~~~~~~~~~i~~~~~glPlai~~~~~~l~~~ 360 (1079)
..... ..........++..||==.=+..+++.++.-
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 32100 1233345667777888777777777777644
No 199
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.047 Score=63.53 Aligned_cols=166 Identities=16% Similarity=0.198 Sum_probs=97.4
Q ss_pred ccccHHHHHHHHHHHhc---------CC---CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHH
Q 044755 156 AFESRLCALKSVQNALT---------DV---NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKI 223 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~---------~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 223 (1079)
++.|-++.+.+|.+-+. .. +.+=|-++|++|+|||-+|++|+.+.. .-|++|..+ ++
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP----EL 741 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP----EL 741 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH----HH
Confidence 46678888888888765 11 245778899999999999999998765 346666654 22
Q ss_pred HHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc-------c--------cccccC---CCCC-CCCCc
Q 044755 224 QQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV-------D--------LEAVGI---PFGD-DHKGC 284 (1079)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-------~--------~~~l~~---~l~~-~~~gs 284 (1079)
+..-. | ..++.+..++++-+..++|+|++|.+++.. + ..++.. -+.+ ...+-
T Consensus 742 LNMYV---G------qSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~V 812 (953)
T KOG0736|consen 742 LNMYV---G------QSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDV 812 (953)
T ss_pred HHHHh---c------chHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCce
Confidence 22221 1 123456677888887899999999998741 0 111111 1111 22233
Q ss_pred EEEEEecChhhhhh--c---CCCceEeCCCCCHHHHHHHHHHHhc---CCCCChhhHHHHHHHHHHcCC
Q 044755 285 KLLLTARDRNVLFR--M---GSQKNFSIDILNEEEAWRLFKLMAD---DHVENRELQSTATEVAQACKG 345 (1079)
Q Consensus 285 ~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~---~~~~~~~~~~~~~~i~~~~~g 345 (1079)
=||=.|..++..+. + .-++...+++=+++++..-..+... .-...-+ ..+|+++|.-
T Consensus 813 FViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd----L~eiAk~cp~ 877 (953)
T KOG0736|consen 813 FVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD----LVEIAKKCPP 877 (953)
T ss_pred EEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC----HHHHHhhCCc
Confidence 34434444433322 2 2345677777777777665544441 1112222 5567777764
No 200
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.80 E-value=0.002 Score=62.20 Aligned_cols=82 Identities=22% Similarity=0.365 Sum_probs=47.1
Q ss_pred hccCCcceEEEecCccccccCcccc-ccccccEEeccccccCC---cccccCCcccceeeccCCcCcccCh----hhccC
Q 044755 550 FTGMRKLRVVDFTRMQLLLLPSSID-LLVNLQTLCLVECMLDD---IAIIGKLKNLEILSFWGSVIVMLPE----ELGHL 621 (1079)
Q Consensus 550 ~~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~---~~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L 621 (1079)
|..+..|..|.|++|.|+.+-+.+. -+++|.+|.|.+|++.+ ...+..++.|++|.+-+|.+...+. .+..+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 4566666667777776666644443 34456666666666544 3444455666666666665544432 24555
Q ss_pred CcccEEcccc
Q 044755 622 TKLRQLDLSN 631 (1079)
Q Consensus 622 ~~L~~L~l~~ 631 (1079)
++|++||+.+
T Consensus 140 p~l~~LDF~k 149 (233)
T KOG1644|consen 140 PSLRTLDFQK 149 (233)
T ss_pred CcceEeehhh
Confidence 5666665544
No 201
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.79 E-value=0.004 Score=63.85 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeC
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVS 215 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 215 (1079)
-.++|+|..|.|||||+..+..... +.|+.+++++-.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~~ 50 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITPE 50 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEecC
Confidence 3678999999999999999988765 568888777553
No 202
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.77 E-value=0.015 Score=72.42 Aligned_cols=105 Identities=16% Similarity=0.203 Sum_probs=59.3
Q ss_pred ccccHHHHHHHHHHHhc-------CC--CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHH
Q 044755 156 AFESRLCALKSVQNALT-------DV--NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQE 226 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 226 (1079)
.++|.+..++.+.+.+. +. ...++.++|+.|+|||.+|+.+++..-.. ....+-++.+...+...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~~~---- 640 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEAHT---- 640 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhhhh----
Confidence 46788888888888874 11 24578999999999999999998876321 12233333332211111
Q ss_pred HHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 044755 227 IAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC 267 (1079)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 267 (1079)
+.+-+|.+.. .........+.+.+++...-+|+||+++..
T Consensus 641 ~~~l~g~~~g-yvg~~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 641 VSRLKGSPPG-YVGYGEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hccccCCCCC-cccccccchHHHHHHhCCCcEEEEechhhc
Confidence 1111121111 000011122445555556679999999764
No 203
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.75 E-value=0.032 Score=59.48 Aligned_cols=57 Identities=25% Similarity=0.214 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHH
Q 044755 162 CALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQ 225 (1079)
Q Consensus 162 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 225 (1079)
..++++..++..+ .-|.+.|.+|+|||++|+.+++... ...+++++....+..+++.
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dllg 65 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLVG 65 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHhh
Confidence 4455666666543 3556899999999999999987442 2245667776666665543
No 204
>PHA00729 NTP-binding motif containing protein
Probab=96.73 E-value=0.0087 Score=60.68 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=28.7
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 166 SVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 166 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
++++.+...+...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555566666789999999999999999999875
No 205
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.71 E-value=0.011 Score=57.69 Aligned_cols=134 Identities=19% Similarity=0.179 Sum_probs=73.4
Q ss_pred cHHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------CCCEEEEEEeCCc-
Q 044755 159 SRLCALKSVQNALTDVNVS-IVGVYGMGGIGKTTLVKEVARQAREDK-------------------LFDLVVFSEVSQT- 217 (1079)
Q Consensus 159 gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~~~~~- 217 (1079)
|.+...+.|.+.+..++++ .+-++|..|+||+++|..+++..-... |.| ..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD-FIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT-EEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc-eEEEeccccc
Confidence 4566777788888777655 679999999999999999988753222 223 233332221
Q ss_pred --cCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEEEecCh
Q 044755 218 --LDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLTARDR 293 (1079)
Q Consensus 218 --~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~ 293 (1079)
..++++. ++...+..... .+++=++|+||++.. .....+...+-....++++|++|++.
T Consensus 80 ~~i~i~~ir-~i~~~~~~~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 80 KSIKIDQIR-EIIEFLSLSPS----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSBSHHHHH-HHHHHCTSS-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred chhhHHHHH-HHHHHHHHHHh----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 2333332 33333322111 246678899999875 34444444443345678888888876
Q ss_pred hh-hhh-cCCCceEeCCCC
Q 044755 294 NV-LFR-MGSQKNFSIDIL 310 (1079)
Q Consensus 294 ~v-~~~-~~~~~~~~l~~L 310 (1079)
.- ... ......+.+.++
T Consensus 143 ~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 143 SKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp GGS-HHHHTTSEEEEE---
T ss_pred HHChHHHHhhceEEecCCC
Confidence 42 222 233345666555
No 206
>PRK08181 transposase; Validated
Probab=96.69 E-value=0.002 Score=68.01 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=59.1
Q ss_pred HHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHH
Q 044755 169 NALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLY 248 (1079)
Q Consensus 169 ~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 248 (1079)
+|+.. ..-+.++|.+|+|||.||..+.+....+ ...++|+++ .+++.++..... . .......
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~----~----~~~~~~l 162 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARR----E----LQLESAI 162 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHh----C----CcHHHHH
Confidence 46553 3468999999999999999999876532 234566543 455555543211 0 1122334
Q ss_pred HHHHcCCcEEEEEeCCCCc--cccc--cccCCCCCCCCCcEEEEEecCh
Q 044755 249 ERLKKEEKILIILDNIWKC--VDLE--AVGIPFGDDHKGCKLLLTARDR 293 (1079)
Q Consensus 249 ~~l~~~~~~LlvlDdv~~~--~~~~--~l~~~l~~~~~gs~iivTtR~~ 293 (1079)
+.+. +.=|||+||+... ..+. .+...+.....+..+||||...
T Consensus 163 ~~l~--~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 163 AKLD--KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHHh--cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 4443 4559999999653 1221 1212121111223588888754
No 207
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.68 E-value=0.021 Score=70.46 Aligned_cols=102 Identities=21% Similarity=0.242 Sum_probs=58.8
Q ss_pred ccccHHHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHH
Q 044755 156 AFESRLCALKSVQNALTD-------V--NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQE 226 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 226 (1079)
.++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.+++... ...+.++.+...+...+
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~~~--- 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKHTV--- 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcccH---
Confidence 356777777777777651 1 234678999999999999999998762 33466665543221111
Q ss_pred HHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 044755 227 IAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC 267 (1079)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 267 (1079)
...++.+.. ....+....+.+.+.....-+++||+++..
T Consensus 527 -~~lig~~~g-yvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 527 -SRLIGAPPG-YVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred -HHHhcCCCC-CcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 111221111 001111223444454445569999999875
No 208
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.68 E-value=0.011 Score=59.72 Aligned_cols=87 Identities=20% Similarity=0.282 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCcccc----chHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGLVLEEE----TGSRRASRLYER 250 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~l~~~ 250 (1079)
++||.++|+.|+||||.+.+++.....+ -..+..++... .....+-++..++.++.+.... +..+.+....+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3689999999999999988888877644 34567777653 3456677788899998775322 222333334444
Q ss_pred HHcCCcEEEEEeCC
Q 044755 251 LKKEEKILIILDNI 264 (1079)
Q Consensus 251 l~~~~~~LlvlDdv 264 (1079)
...++.=+|++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 44333347777754
No 209
>PRK07261 topology modulation protein; Provisional
Probab=96.67 E-value=0.0059 Score=60.33 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhc-CCCCEEEE
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQARED-KLFDLVVF 211 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 211 (1079)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999998775422 13455555
No 210
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.029 Score=64.31 Aligned_cols=151 Identities=18% Similarity=0.180 Sum_probs=84.4
Q ss_pred cccccHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHH
Q 044755 155 EAFESRLCALKSVQNALT-------------DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIK 221 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 221 (1079)
.++.|-++.+.+|-+.+. -...+-|-.+|++|.|||++|+++++..... | +.++..
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp---- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP---- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH----
Confidence 345566666655554443 1346788999999999999999999987632 3 333322
Q ss_pred HHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc-------------cccccCCCCCCCCCcEEEE
Q 044755 222 KIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD-------------LEAVGIPFGDDHKGCKLLL 288 (1079)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~l~~~~~gs~iiv 288 (1079)
+ ++.... + ..+..+..++++-++--+.+|+||.++...- +..+..-+........|+|
T Consensus 503 E----L~sk~v----G-eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 503 E----LFSKYV----G-ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred H----HHHHhc----C-chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 1 111110 0 1122334455555555778888888765311 1111112211122223433
Q ss_pred ---EecChhhhhh-cC---CCceEeCCCCCHHHHHHHHHHHhcC
Q 044755 289 ---TARDRNVLFR-MG---SQKNFSIDILNEEEAWRLFKLMADD 325 (1079)
Q Consensus 289 ---TtR~~~v~~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~ 325 (1079)
|-|...+-.. +. .+..+.++.-+.+.-.++|+.++..
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 3343333222 33 4567888888888889999999843
No 211
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.64 E-value=0.00018 Score=72.02 Aligned_cols=244 Identities=18% Similarity=0.074 Sum_probs=122.4
Q ss_pred cCCcceEEEecCccccc-----cCccccccccccEEecccccc---CC---------cccccCCcccceeeccCCcCc-c
Q 044755 552 GMRKLRVVDFTRMQLLL-----LPSSIDLLVNLQTLCLVECML---DD---------IAIIGKLKNLEILSFWGSVIV-M 613 (1079)
Q Consensus 552 ~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~l---~~---------~~~i~~L~~L~~L~l~~~~l~-~ 613 (1079)
-+..+..+|||+|.|.. +-..|.+-.+|+..+++.-.. .+ .+.+-+|++|+..+|+.|-+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 35666777777776542 444455566777777665421 11 134556777888888777332 3
Q ss_pred cCh----hhccCCcccEEcccccccccccChhhhh-------------cccccceeecccccccccCCCCCchhhhcchh
Q 044755 614 LPE----ELGHLTKLRQLDLSNCFKLKVIAPNVIS-------------RLVRLEELYMSNCFVEWDDEGPNSERINARLD 676 (1079)
Q Consensus 614 lp~----~i~~L~~L~~L~l~~~~~l~~~~~~~l~-------------~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 676 (1079)
.|. -|.+-+.|.||.+++| .+..+..+-++ .-+.|+......|++. .+ .......
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle---ng----s~~~~a~ 179 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE---NG----SKELSAA 179 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc---cC----cHHHHHH
Confidence 333 2556677888888776 45544333233 2255666666666543 11 1112223
Q ss_pred hhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccc--cccccCCCceeeccCC
Q 044755 677 ELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDL--DREGFSRLKHLHVQNN 754 (1079)
Q Consensus 677 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l--~~~~~~~L~~L~l~~~ 754 (1079)
.+....+|..+.+..|++..-.-. .|-..+...+++|+.|+|..+.-.......+ ....++.|+.|.+..|
T Consensus 180 ~l~sh~~lk~vki~qNgIrpegv~-------~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPEGVT-------MLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHhhcCceeEEeeecCcCcchhH-------HHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 345556788888887765422111 0111112225677777777654322111101 0134577888888777
Q ss_pred CCcceecccCCcCCCCCCCCccceeeccccccccc----cccCcCCcCCCCCcceEEeec
Q 044755 755 PDFMCIVDSKERVPLDDAFPILESLNLYNLIKLER----ICQDRLSVQSFNELKTIRVEL 810 (1079)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~----i~~~~~~~~~~~~L~~L~l~~ 810 (1079)
--...-...-...+....+|+|..|.+.....-.. +....+..+.+|-|..|.+.+
T Consensus 253 lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 253 LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence 31110000000001224567777777655322111 112223345666666666665
No 212
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.00027 Score=71.16 Aligned_cols=80 Identities=30% Similarity=0.401 Sum_probs=40.0
Q ss_pred cccccEEeccccccCCcccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccCh-hhhhcccccceeec
Q 044755 576 LVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAP-NVISRLVRLEELYM 654 (1079)
Q Consensus 576 L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~-~~l~~L~~L~~L~l 654 (1079)
+.+.+-|++.+|.+.++..+.+++.|++|.|+-|+|+.| +.+..+++|+.|+|+.| .+..+.. ..+.++++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhh
Confidence 444455555555555555555555555555555555555 22455555555555554 3433322 11344555555555
Q ss_pred ccc
Q 044755 655 SNC 657 (1079)
Q Consensus 655 ~~~ 657 (1079)
..|
T Consensus 96 ~EN 98 (388)
T KOG2123|consen 96 DEN 98 (388)
T ss_pred ccC
Confidence 443
No 213
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.60 E-value=0.025 Score=70.99 Aligned_cols=105 Identities=21% Similarity=0.290 Sum_probs=60.0
Q ss_pred ccccHHHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHH
Q 044755 156 AFESRLCALKSVQNALTD-------V--NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQE 226 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 226 (1079)
.++|.+..++.+.+.+.. . ...++.++|+.|+|||++|+.+....... -...+.++.+.......+
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~~--- 640 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHSV--- 640 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccchH---
Confidence 467888888888888752 1 13578899999999999999999876421 233455555543221111
Q ss_pred HHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 044755 227 IAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC 267 (1079)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 267 (1079)
.+-+|.+.. ...-+....+...+.+....+|+||+++..
T Consensus 641 -~~l~g~~~g-~~g~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 641 -ARLIGAPPG-YVGYEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred -HHhcCCCCC-ccCcccccHHHHHHHcCCCcEEEEeccccC
Confidence 111121111 000011122334444334458999999875
No 214
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0063 Score=67.19 Aligned_cols=93 Identities=27% Similarity=0.320 Sum_probs=62.1
Q ss_pred cccccHH---HHHHHHHHHhcCCC---------ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHH
Q 044755 155 EAFESRL---CALKSVQNALTDVN---------VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKK 222 (1079)
Q Consensus 155 ~~~~gr~---~~~~~l~~~l~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 222 (1079)
.++.|.| .++++++++|.++. ++-|.++|++|.|||-||++|+-+..+. +|...+..|+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP------FF~~sGSEFd--- 374 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP------FFYASGSEFD--- 374 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC------eEeccccchh---
Confidence 3445555 46788899988542 5678899999999999999999776543 2333333322
Q ss_pred HHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 044755 223 IQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC 267 (1079)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 267 (1079)
+++-.. ...++..++..-+..-+++|++|.++..
T Consensus 375 ---Em~VGv--------GArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 375 ---EMFVGV--------GARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred ---hhhhcc--------cHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 222111 1334556666666678999999998764
No 215
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.56 E-value=0.037 Score=68.65 Aligned_cols=171 Identities=15% Similarity=0.200 Sum_probs=96.1
Q ss_pred cccccHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHH
Q 044755 155 EAFESRLCALKSVQNALT-------------DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIK 221 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 221 (1079)
..+.|.+..++++.+.+. -...+-+.++|++|+|||++|+++++.... .| +.++..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~--~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA--NF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CE-----EEEehH----
Confidence 345676766666655543 112456888999999999999999998642 22 222211
Q ss_pred HHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc--------------cccccCCCCC--CCCCcE
Q 044755 222 KIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD--------------LEAVGIPFGD--DHKGCK 285 (1079)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--------------~~~l~~~l~~--~~~gs~ 285 (1079)
++ +... .+ .....+..++....+..+.+|++|+++.... ...+...+.. ...+.-
T Consensus 522 ~l----~~~~----vG-ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 EI----LSKW----VG-ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred HH----hhcc----cC-cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 11 1111 00 1122344555555556889999999865310 0111111111 123445
Q ss_pred EEEEecChhhhhh--c---CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 286 LLLTARDRNVLFR--M---GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 286 iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
||.||...+.... + .-+..+.++..+.++-.++|+.+.......++. -...+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 6667765544332 1 335688999999999999998776332211111 1456777887754
No 216
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.53 E-value=0.032 Score=69.76 Aligned_cols=59 Identities=27% Similarity=0.292 Sum_probs=40.6
Q ss_pred ccccHHHHHHHHHHHhcC-------CC--ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC
Q 044755 156 AFESRLCALKSVQNALTD-------VN--VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ 216 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~-------~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 216 (1079)
.++|.+..++.+...+.. .+ ..++.++|+.|+|||++|+.+++..... -...+.++++.
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se 636 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSE 636 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHH
Confidence 466888888887777651 11 2478899999999999999999765321 12345555543
No 217
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.50 E-value=0.066 Score=57.92 Aligned_cols=149 Identities=12% Similarity=0.177 Sum_probs=81.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCcc-----CHHHHHHHHHHHhCCCccccchHHHHHHHH
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTL-----DIKKIQQEIAEKLGLVLEEETGSRRASRLY 248 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 248 (1079)
.....+.|+|++|+|||.+|++++++.... | +-++.++-. ..++.++++.+.. .
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~--~---i~vsa~eL~sk~vGEsEk~IR~~F~~A----------------~ 204 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE--P---IVMSAGELESENAGEPGKLIRQRYREA----------------A 204 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC--e---EEEEHHHhhcCcCCcHHHHHHHHHHHH----------------H
Confidence 346789999999999999999999987632 2 223222111 1223333332211 0
Q ss_pred HHH-HcCCcEEEEEeCCCCcc------c--c------ccccCC--------C------CCCCCCcEEEEEecChhhhhh-
Q 044755 249 ERL-KKEEKILIILDNIWKCV------D--L------EAVGIP--------F------GDDHKGCKLLLTARDRNVLFR- 298 (1079)
Q Consensus 249 ~~l-~~~~~~LlvlDdv~~~~------~--~------~~l~~~--------l------~~~~~gs~iivTtR~~~v~~~- 298 (1079)
+.. .++++++|++||++... + . ..+... + .....+..||+||...+....
T Consensus 205 ~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpA 284 (413)
T PLN00020 205 DIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAP 284 (413)
T ss_pred HHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHh
Confidence 111 13689999999987531 0 0 011100 1 122345678888876654332
Q ss_pred -cCC---CceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCch
Q 044755 299 -MGS---QKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPI 348 (1079)
Q Consensus 299 -~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 348 (1079)
... ++.| ..-+.++-.++++.+......+ ..-..+|++...|-|+
T Consensus 285 LlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 285 LIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred HcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC---HHHHHHHHHcCCCCCc
Confidence 121 2233 3456677777777766433222 2335667777777664
No 218
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.46 E-value=0.059 Score=56.66 Aligned_cols=166 Identities=20% Similarity=0.189 Sum_probs=100.2
Q ss_pred ccccHHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccC-HHHHHHHHHHH
Q 044755 156 AFESRLCALKSVQNALT----DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLD-IKKIQQEIAEK 230 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~ 230 (1079)
.+.|-.++..++-.|+. .++..-+.|+|+.|.|||+|...+..+.+ +.=+..+-|......- -+-.+++|.++
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q--~~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ--ENGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH--hcCCeEEEEEECccchhhHHHHHHHHHH
Confidence 56788888888888776 34556788999999999999988877732 1112334444444332 23355667666
Q ss_pred hCCCccc-----cchHHHHHHHHHHHHcC-----CcEEEEEeCCCCccc-------cccccCCCCCCCCCcEEEEEecCh
Q 044755 231 LGLVLEE-----ETGSRRASRLYERLKKE-----EKILIILDNIWKCVD-------LEAVGIPFGDDHKGCKLLLTARDR 293 (1079)
Q Consensus 231 l~~~~~~-----~~~~~~~~~l~~~l~~~-----~~~LlvlDdv~~~~~-------~~~l~~~l~~~~~gs~iivTtR~~ 293 (1079)
+...... -+-.+....+...|+.+ -++++|+|.++-... +.-+...-....+-|-|-+|||-.
T Consensus 103 l~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 6432221 22344566777777642 457888887765311 111111111234567788999965
Q ss_pred h-------hhhhcCCCceEeCCCCCHHHHHHHHHHHh
Q 044755 294 N-------VLFRMGSQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 294 ~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
- |-.++....++-++.++-++...++++..
T Consensus 183 ~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 183 ILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 2 22233334467778888888888888877
No 219
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=1.4 Score=45.77 Aligned_cols=91 Identities=23% Similarity=0.260 Sum_probs=57.3
Q ss_pred cccHHHHHHHHHHHhc----------CC--CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHH
Q 044755 157 FESRLCALKSVQNALT----------DV--NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQ 224 (1079)
Q Consensus 157 ~~gr~~~~~~l~~~l~----------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 224 (1079)
+.|-+..++.|.++.. .. .-+-|.++|++|.||+.||++|+.... .-|.+||..-
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-------STFFSvSSSD------ 201 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-------STFFSVSSSD------ 201 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-------CceEEeehHH------
Confidence 4466666666666543 11 256788999999999999999998764 1234555431
Q ss_pred HHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 044755 225 QEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC 267 (1079)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 267 (1079)
+...... ..+..+..+++-.++.|+-+|++|.|+..
T Consensus 202 --LvSKWmG-----ESEkLVknLFemARe~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 202 --LVSKWMG-----ESEKLVKNLFEMARENKPSIIFIDEIDSL 237 (439)
T ss_pred --HHHHHhc-----cHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 1111110 11233455566666789999999998753
No 220
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.45 E-value=0.0028 Score=61.29 Aligned_cols=77 Identities=26% Similarity=0.242 Sum_probs=37.1
Q ss_pred cceEEEecCccccccCccccccccccEEeccccccCC--cccccCCcccceeeccCCcCcccCh--hhccCCcccEEccc
Q 044755 555 KLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIVMLPE--ELGHLTKLRQLDLS 630 (1079)
Q Consensus 555 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~ 630 (1079)
..-.+||++|.+..++ .+..+..|.+|.|..|.|+. |.--..+.+|++|.+.+|++.++-. .+..+++|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3445566666555442 24445555566665555554 2222233445555555555544421 13344455555444
Q ss_pred cc
Q 044755 631 NC 632 (1079)
Q Consensus 631 ~~ 632 (1079)
+|
T Consensus 122 ~N 123 (233)
T KOG1644|consen 122 GN 123 (233)
T ss_pred CC
Confidence 43
No 221
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.44 E-value=0.13 Score=59.59 Aligned_cols=198 Identities=22% Similarity=0.210 Sum_probs=121.8
Q ss_pred ccccHHHHHHHHHHHhc----C-CCceEEEEEcCCCCcHHHHHHHHHHHhhh---cC---CCCEEEEEEeCCccCHHHHH
Q 044755 156 AFESRLCALKSVQNALT----D-VNVSIVGVYGMGGIGKTTLVKEVARQARE---DK---LFDLVVFSEVSQTLDIKKIQ 224 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~---~F~~~~wv~~~~~~~~~~~~ 224 (1079)
.+.+|+.+..+|-+.+. + +..+.+-|.|.+|+|||..+..|.+.... ++ .|+ .+.|+.-.-..+.++.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHH
Confidence 35579999988888775 3 34558999999999999999999986542 11 232 4556666667899999
Q ss_pred HHHHHHhCCCccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCccc--cccccCCCCC-CCCCcEEEEEec-Ch-h-
Q 044755 225 QEIAEKLGLVLEEETGSRRASRLYERLK----KEEKILIILDNIWKCVD--LEAVGIPFGD-DHKGCKLLLTAR-DR-N- 294 (1079)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~~--~~~l~~~l~~-~~~gs~iivTtR-~~-~- 294 (1079)
..|..++..... .....+..+..++. +.+..+|++|+++..-. -+-+...|.+ ...+||++|.+= +. +
T Consensus 476 ~~I~~~lsg~~~--~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdl 553 (767)
T KOG1514|consen 476 EKIWEALSGERV--TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDL 553 (767)
T ss_pred HHHHHhcccCcc--cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccC
Confidence 999999865332 22222334444443 24678888998765311 1111122222 345777665432 11 1
Q ss_pred --------hhhhcCCCceEeCCCCCHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 044755 295 --------VLFRMGSQKNFSIDILNEEEAWRLFKLMADDH--VENRELQSTATEVAQACKGLPIALTTIARAL 357 (1079)
Q Consensus 295 --------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 357 (1079)
++..++ ...+.+.|.+.++-.++...+..+. ......+-+|++++.-.|..-.|+.+.-++.
T Consensus 554 PEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 554 PERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred HHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 111111 2357889999999888888877332 2334455567777776676666666655544
No 222
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.43 E-value=0.011 Score=64.05 Aligned_cols=116 Identities=19% Similarity=0.176 Sum_probs=68.4
Q ss_pred cHHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCC
Q 044755 159 SRLCALKSVQNALTD----VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLV 234 (1079)
Q Consensus 159 gr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1079)
+|........+++.+ ...+-+.++|..|+|||.||.++++.... ..+. +.|++++ +++.++.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~-~g~~-v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK-KGVS-STLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH-cCCC-EEEEEHH------HHHHHHHHHHhcC
Confidence 455555555666552 23467899999999999999999999863 2333 4555543 4555555443211
Q ss_pred ccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc--ccccc--ccCCC-CCC-CCCcEEEEEecC
Q 044755 235 LEEETGSRRASRLYERLKKEEKILIILDNIWKC--VDLEA--VGIPF-GDD-HKGCKLLLTARD 292 (1079)
Q Consensus 235 ~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~--l~~~l-~~~-~~gs~iivTtR~ 292 (1079)
......+.+. +-=||||||+..+ .+|.. +...+ ... ..+-.+|+||--
T Consensus 207 --------~~~~~l~~l~--~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 207 --------SVKEKIDAVK--EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred --------cHHHHHHHhc--CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1223344443 6679999999654 45642 32222 212 234567777764
No 223
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.057 Score=53.81 Aligned_cols=130 Identities=22% Similarity=0.278 Sum_probs=77.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHc
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKK 253 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (1079)
.+.+-+.++|++|.|||-||++|++.- +..|+.||... -+++-|.+. ......++--.++
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht-------~c~firvsgse---lvqk~igeg----------srmvrelfvmare 238 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSE---LVQKYIGEG----------SRMVRELFVMARE 238 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechHH---HHHHHhhhh----------HHHHHHHHHHHHh
Confidence 356788899999999999999999754 34567777531 122222111 1122333333345
Q ss_pred CCcEEEEEeCCCCccc------------cc----cccCCCC--CCCCCcEEEEEecChhhhhh-----cCCCceEeCCCC
Q 044755 254 EEKILIILDNIWKCVD------------LE----AVGIPFG--DDHKGCKLLLTARDRNVLFR-----MGSQKNFSIDIL 310 (1079)
Q Consensus 254 ~~~~LlvlDdv~~~~~------------~~----~l~~~l~--~~~~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L 310 (1079)
..+-+|++|.+++... .. .+...+. ...+.-+||..|..-++... -..++.|+..+-
T Consensus 239 hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p 318 (404)
T KOG0728|consen 239 HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPP 318 (404)
T ss_pred cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCC
Confidence 6788888998876411 00 1111111 12346688887766555443 234567889888
Q ss_pred CHHHHHHHHHHHh
Q 044755 311 NEEEAWRLFKLMA 323 (1079)
Q Consensus 311 ~~~~~~~lf~~~~ 323 (1079)
+++.-.++++-+.
T Consensus 319 ~e~ar~~ilkihs 331 (404)
T KOG0728|consen 319 NEEARLDILKIHS 331 (404)
T ss_pred CHHHHHHHHHHhh
Confidence 8877777776555
No 224
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.37 E-value=0.13 Score=56.72 Aligned_cols=164 Identities=12% Similarity=0.064 Sum_probs=95.6
Q ss_pred HHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhc--------------------CCCCEEEEEEeCCccCH
Q 044755 162 CALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQARED--------------------KLFDLVVFSEVSQTLDI 220 (1079)
Q Consensus 162 ~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~~~~~~~~ 220 (1079)
...+++...+..+++ ..+-+.|+.|+||+++|..++...-.. .|.|.. ++.-...
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~-~i~p~~~--- 84 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYY-TLTPEKG--- 84 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEE-EEecccc---
Confidence 346677777776654 467799999999999999988775321 122221 1111000
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEEEecCh-
Q 044755 221 KKIQQEIAEKLGLVLEEETGSRRASRLYERLK----KEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLLTARDR- 293 (1079)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~- 293 (1079)
......+.+..+.+.+. .+++=++|+|+++... .-..+...+-+...++-+|++|.+.
T Consensus 85 ---------------~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~ 149 (334)
T PRK07993 85 ---------------KSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPA 149 (334)
T ss_pred ---------------cccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChh
Confidence 00111223333444432 3567789999988752 2233323332333456666666654
Q ss_pred hhhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHH
Q 044755 294 NVLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIAL 350 (1079)
Q Consensus 294 ~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 350 (1079)
.+... ......+.+.+++.+++.+.+.+..+. + .+.+..+++.++|.|..+
T Consensus 150 ~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~---~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 150 RLLATLRSRCRLHYLAPPPEQYALTWLSREVTM---S---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred hChHHHHhccccccCCCCCHHHHHHHHHHccCC---C---HHHHHHHHHHcCCCHHHH
Confidence 34433 222346899999999998888664321 1 233678899999999644
No 225
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.035 Score=62.77 Aligned_cols=129 Identities=20% Similarity=0.311 Sum_probs=82.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEE 255 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1079)
..=|.++|++|.|||-||++|+++.... |++|... +++.+.. | ..+..+..++++-+...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkYV---G------ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKYV---G------ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHHh---h------hHHHHHHHHHHHhhcCC
Confidence 5678899999999999999999987633 5666543 2222211 1 12233556677777789
Q ss_pred cEEEEEeCCCCc-------cc------cccccCCCCC--CCCCcEEEEEecChhhhhh--c---CCCceEeCCCCCHHHH
Q 044755 256 KILIILDNIWKC-------VD------LEAVGIPFGD--DHKGCKLLLTARDRNVLFR--M---GSQKNFSIDILNEEEA 315 (1079)
Q Consensus 256 ~~LlvlDdv~~~-------~~------~~~l~~~l~~--~~~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~ 315 (1079)
+++|+||.++.. .. ...+..-+.. ...|.-||-.|..+++... + .-++..-++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999998763 11 1222222221 2345566666665555432 2 2346778888889999
Q ss_pred HHHHHHHhc
Q 044755 316 WRLFKLMAD 324 (1079)
Q Consensus 316 ~~lf~~~~~ 324 (1079)
.++++....
T Consensus 685 ~~ILK~~tk 693 (802)
T KOG0733|consen 685 VAILKTITK 693 (802)
T ss_pred HHHHHHHhc
Confidence 999988884
No 226
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.35 E-value=0.018 Score=59.33 Aligned_cols=47 Identities=28% Similarity=0.361 Sum_probs=37.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQ 225 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 225 (1079)
-+++.|+|.+|+|||+++.+++..... .-..++|++... ++...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~--~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR--QGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCC-CCHHHHHH
Confidence 579999999999999999998877642 246789999976 66655544
No 227
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.35 E-value=0.16 Score=55.78 Aligned_cols=103 Identities=14% Similarity=0.163 Sum_probs=61.2
Q ss_pred HHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEEEecC-hhhhhh-cCCCceEeCCCCCHH
Q 044755 242 RRASRLYERLK----KEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLTARD-RNVLFR-MGSQKNFSIDILNEE 313 (1079)
Q Consensus 242 ~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~ 313 (1079)
+.+..+.+.+. .+++=++|+|+++.. .....+...+-....++.+|++|.+ ..+... ......+.+.+++.+
T Consensus 115 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~ 194 (342)
T PRK06964 115 EQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPE 194 (342)
T ss_pred HHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHH
Confidence 33444444443 245568889999875 3344443334333456666655555 444433 233458999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 044755 314 EAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTI 353 (1079)
Q Consensus 314 ~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 353 (1079)
+..+.+.+.. . .+ ...++..++|.|..+..+
T Consensus 195 ~~~~~L~~~~-~---~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 195 AAAAWLAAQG-V---AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred HHHHHHHHcC-C---Ch-----HHHHHHHcCCCHHHHHHH
Confidence 9999887752 1 11 223577889999755433
No 228
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.35 E-value=0.038 Score=68.47 Aligned_cols=174 Identities=16% Similarity=0.215 Sum_probs=95.2
Q ss_pred ccccccHHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCH
Q 044755 154 YEAFESRLCALKSVQNALT----D---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDI 220 (1079)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 220 (1079)
..++.|.+..++++.+++. . ...+-+.++|++|+|||+||+.+++.... .| +.++.+.
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~--~~---i~i~~~~---- 247 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA--YF---ISINGPE---- 247 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC--eE---EEEecHH----
Confidence 3456788888888877653 1 22457889999999999999999987641 12 2332211
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc-------------cccccCCCCC-CCCCcEE
Q 044755 221 KKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD-------------LEAVGIPFGD-DHKGCKL 286 (1079)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~l~~-~~~gs~i 286 (1079)
+... . .. ........+++......+.+|++||++.... ...+...+.. ...+..+
T Consensus 248 --i~~~----~----~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 248 --IMSK----Y----YG-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred --Hhcc----c----cc-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 1100 0 00 1122234444544446778999999865310 1112111111 1123334
Q ss_pred EE-EecChh-hhhhc----CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchH
Q 044755 287 LL-TARDRN-VLFRM----GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIA 349 (1079)
Q Consensus 287 iv-TtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 349 (1079)
++ ||.... +...+ .-...+.+...+.++-.++++.........+ ......+++.+.|.--+
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCCHH
Confidence 44 444332 11111 1245788888899998889887663321111 11256788888886543
No 229
>PRK12377 putative replication protein; Provisional
Probab=96.34 E-value=0.02 Score=59.81 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=48.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKE 254 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1079)
+...+.++|..|+|||+||.++++....+ ...++++++. +++..+-..... . .....+.+.+ .
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~---~----~~~~~~l~~l--~ 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDN---G----QSGEKFLQEL--C 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhc---c----chHHHHHHHh--c
Confidence 34678999999999999999999987633 3335666554 344444333211 0 0112344444 3
Q ss_pred CcEEEEEeCCCC
Q 044755 255 EKILIILDNIWK 266 (1079)
Q Consensus 255 ~~~LlvlDdv~~ 266 (1079)
+--|||+||+..
T Consensus 163 ~~dLLiIDDlg~ 174 (248)
T PRK12377 163 KVDLLVLDEIGI 174 (248)
T ss_pred CCCEEEEcCCCC
Confidence 677999999954
No 230
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.32 E-value=0.016 Score=66.27 Aligned_cols=188 Identities=16% Similarity=0.206 Sum_probs=111.5
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
|....+++|.+.....|..++..++. .-....|.-|+||||+|+.+++-.-.... .....+..-...++|..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINE 84 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhc
Confidence 34455678999999999999886643 34567899999999999999887643211 11222222233333332
Q ss_pred HhCC-----CccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEEEecC-hhhhh
Q 044755 230 KLGL-----VLEEETGSRRASRLYERLK----KEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLTARD-RNVLF 297 (1079)
Q Consensus 230 ~l~~-----~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~ 297 (1079)
.-.. ........+....+.+... +++-=+.|+|+|... ..|..+.-.+-......+.|+.|++ +.+-.
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 2100 0011122334445555543 245558889999764 5566665555443445565555554 44332
Q ss_pred h-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCC
Q 044755 298 R-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGL 346 (1079)
Q Consensus 298 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 346 (1079)
. ......|.++.++.++-...+...+..... ....+...-|++...|.
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I-~~e~~aL~~ia~~a~Gs 213 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGI-NIEEDALSLIARAAEGS 213 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCC-ccCHHHHHHHHHHcCCC
Confidence 2 344567999999999998888888743221 12245566777777774
No 231
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.32 E-value=0.0024 Score=63.31 Aligned_cols=74 Identities=28% Similarity=0.357 Sum_probs=45.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEE 255 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1079)
..-+.++|..|+|||.||..+.+..-. +.+ .+.|++. .+++..+-. ..... ....+.+.+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~-~v~f~~~------~~L~~~l~~----~~~~~----~~~~~~~~l~--~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR-KGY-SVLFITA------SDLLDELKQ----SRSDG----SYEELLKRLK--R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH-TT---EEEEEH------HHHHHHHHC----CHCCT----THCHHHHHHH--T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc-CCc-ceeEeec------Cceeccccc----ccccc----chhhhcCccc--c
Confidence 457999999999999999999988654 223 3566653 445554432 11111 1223455554 4
Q ss_pred cEEEEEeCCCCc
Q 044755 256 KILIILDNIWKC 267 (1079)
Q Consensus 256 ~~LlvlDdv~~~ 267 (1079)
-=||||||+-..
T Consensus 109 ~dlLilDDlG~~ 120 (178)
T PF01695_consen 109 VDLLILDDLGYE 120 (178)
T ss_dssp SSCEEEETCTSS
T ss_pred ccEeccccccee
Confidence 557889999764
No 232
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.28 E-value=0.0088 Score=58.94 Aligned_cols=103 Identities=18% Similarity=0.121 Sum_probs=66.3
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEK 230 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 230 (1079)
|....+++|-++.++++--...+++.+-+.|.||+|+||||-+..+++..-...+=+.+.=.++|....+.-+-..|-.-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~F 102 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMF 102 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHH
Confidence 33445678888888887777778899999999999999999999998886543333455555555554443333332110
Q ss_pred hCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 044755 231 LGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC 267 (1079)
Q Consensus 231 l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 267 (1079)
... .-.+-.++--++|||..++.
T Consensus 103 AQ~--------------kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 103 AQK--------------KVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred HHh--------------hccCCCCceeEEEeeccchh
Confidence 000 00011255668889998875
No 233
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.069 Score=63.86 Aligned_cols=103 Identities=22% Similarity=0.323 Sum_probs=60.2
Q ss_pred cccHHHHHHHHHHHhc-------CC--CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHH
Q 044755 157 FESRLCALKSVQNALT-------DV--NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEI 227 (1079)
Q Consensus 157 ~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 227 (1079)
++|.++.++.+.+++. ++ ...+...+|+.|||||-||++++...-..+ +..+-++.|....-..+-+
T Consensus 493 ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~EkHsVSr-- 568 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYMEKHSVSR-- 568 (786)
T ss_pred eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHHHHHHHH--
Confidence 5688999988888875 22 345777799999999999999998763211 3345444443322222222
Q ss_pred HHHhCCCccccchHHHHHHHHHHHHcCCcE-EEEEeCCCCc
Q 044755 228 AEKLGLVLEEETGSRRASRLYERLKKEEKI-LIILDNIWKC 267 (1079)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~-LlvlDdv~~~ 267 (1079)
-.|.+.. -..-+.-..+-+..+ .++| +|.||+|+..
T Consensus 569 --LIGaPPG-YVGyeeGG~LTEaVR-r~PySViLlDEIEKA 605 (786)
T COG0542 569 --LIGAPPG-YVGYEEGGQLTEAVR-RKPYSVILLDEIEKA 605 (786)
T ss_pred --HhCCCCC-CceeccccchhHhhh-cCCCeEEEechhhhc
Confidence 2222211 000111223334444 4777 7778999875
No 234
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.024 Score=59.80 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=52.5
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHH
Q 044755 166 SVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRAS 245 (1079)
Q Consensus 166 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 245 (1079)
.+.+++. +..-+.++|.+|+|||.||.++.++.. +..+ .+.|++ ..+++.++...... .....
T Consensus 97 ~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~-------~~~~~ 159 (254)
T COG1484 97 SLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDE-------GRLEE 159 (254)
T ss_pred HHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhc-------CchHH
Confidence 3444444 567889999999999999999999987 4333 345554 44566666554432 01122
Q ss_pred HHHHHHHcCCcEEEEEeCCCCc
Q 044755 246 RLYERLKKEEKILIILDNIWKC 267 (1079)
Q Consensus 246 ~l~~~l~~~~~~LlvlDdv~~~ 267 (1079)
.+.+.+. +-=||||||+-..
T Consensus 160 ~l~~~l~--~~dlLIiDDlG~~ 179 (254)
T COG1484 160 KLLRELK--KVDLLIIDDIGYE 179 (254)
T ss_pred HHHHHhh--cCCEEEEecccCc
Confidence 2333332 4559999998763
No 235
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.022 Score=62.90 Aligned_cols=89 Identities=16% Similarity=0.186 Sum_probs=56.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKE 254 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1079)
..++.++|+.|+||||++.++......+.....+..++... .....+-++..++.++.+................+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc--
Confidence 46999999999999999999998764332224566666543 234556666777777776543333222333444443
Q ss_pred CcEEEEEeCCCC
Q 044755 255 EKILIILDNIWK 266 (1079)
Q Consensus 255 ~~~LlvlDdv~~ 266 (1079)
++-+|++|..-.
T Consensus 215 ~~DlVLIDTaG~ 226 (374)
T PRK14722 215 NKHMVLIDTIGM 226 (374)
T ss_pred CCCEEEEcCCCC
Confidence 345666898753
No 236
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.24 E-value=0.025 Score=59.53 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=39.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCEEEEEEeCCccCHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKL----FDLVVFSEVSQTLDIKKIQQEIAEKL 231 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l 231 (1079)
-.++.|+|.+|+|||+||.+++-....... -..++|++....++...+. ++++..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~ 77 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERF 77 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHh
Confidence 479999999999999999999765432221 3578999998877765443 333443
No 237
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.22 E-value=0.0043 Score=57.46 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
||.|+|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 238
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.20 E-value=0.047 Score=66.61 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=58.2
Q ss_pred ccccHHHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHH
Q 044755 156 AFESRLCALKSVQNALTD-------V--NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQE 226 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 226 (1079)
.++|.++.++.+.+++.. . ....+.++|+.|+|||++|+.++.... . ..+.++.+.......
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~---~~i~id~se~~~~~~---- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--I---ELLRFDMSEYMERHT---- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--C---CcEEeechhhccccc----
Confidence 356888888888877751 1 235788999999999999999988763 1 234455544322111
Q ss_pred HHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 044755 227 IAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC 267 (1079)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 267 (1079)
+.+-+|.+... ...+....+.+.+.+...-+|+||+++..
T Consensus 530 ~~~LiG~~~gy-vg~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPGY-VGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCCc-ccccccchHHHHHHhCCCcEEEeccHhhh
Confidence 11112221110 00011122333444444569999999875
No 239
>PRK06526 transposase; Provisional
Probab=96.19 E-value=0.0049 Score=64.87 Aligned_cols=74 Identities=22% Similarity=0.187 Sum_probs=43.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEE 255 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1079)
...+.++|++|+|||+||..+....... .+. +.|+ +..+++..+..... . .........+ .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~-g~~-v~f~------t~~~l~~~l~~~~~----~----~~~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA-GHR-VLFA------TAAQWVARLAAAHH----A----GRLQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC-CCc-hhhh------hHHHHHHHHHHHHh----c----CcHHHHHHHh--cc
Confidence 3568999999999999999998876532 222 3343 33445555543211 0 0111222333 24
Q ss_pred cEEEEEeCCCCc
Q 044755 256 KILIILDNIWKC 267 (1079)
Q Consensus 256 ~~LlvlDdv~~~ 267 (1079)
.-+||+||+...
T Consensus 160 ~dlLIIDD~g~~ 171 (254)
T PRK06526 160 YPLLIVDEVGYI 171 (254)
T ss_pred CCEEEEcccccC
Confidence 568999999753
No 240
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.00056 Score=68.95 Aligned_cols=99 Identities=21% Similarity=0.162 Sum_probs=60.2
Q ss_pred CcceEEEecCccccccCccccccccccEEeccccccCCcccccCCcccceeeccCCcCcccCh--hhccCCcccEEcccc
Q 044755 554 RKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSVIVMLPE--ELGHLTKLRQLDLSN 631 (1079)
Q Consensus 554 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~ 631 (1079)
.+.+.|++-+|.+..+ .-+.+++.|++|.|+-|+|+....+..+++|+.|+|+.|.|..+-+ .+.++++|+.|.|..
T Consensus 19 ~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 3444455555555443 1123556666666666666666666677777777777776665533 357788888888887
Q ss_pred cccccccCh----hhhhcccccceee
Q 044755 632 CFKLKVIAP----NVISRLVRLEELY 653 (1079)
Q Consensus 632 ~~~l~~~~~----~~l~~L~~L~~L~ 653 (1079)
|.....-++ .++.-|++|++|+
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 765554443 2345567777776
No 241
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.18 E-value=0.0073 Score=65.62 Aligned_cols=47 Identities=26% Similarity=0.246 Sum_probs=40.5
Q ss_pred ccccHHHHHHHHHHHhcC------CCceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044755 156 AFESRLCALKSVQNALTD------VNVSIVGVYGMGGIGKTTLVKEVARQARE 202 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (1079)
.++|.++.++++++++.. ...+++.++|++|+||||||+.+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 578999999999999862 24579999999999999999999988753
No 242
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.042 Score=63.23 Aligned_cols=150 Identities=17% Similarity=0.112 Sum_probs=86.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc--cCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHc
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT--LDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKK 253 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (1079)
..-|-|.|..|+|||+||+++++... +.+.-.+.+|+++.- ...+.+++.+-.- +.+.+ .
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v----------------fse~~-~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV----------------FSEAL-W 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHH----------------HHHHH-h
Confidence 35788999999999999999999987 555566778888753 2344444333211 11122 2
Q ss_pred CCcEEEEEeCCCCc--------cccccc-----------cCCCCCCCCCcE--EEEEecChhhhhh-----cCCCceEeC
Q 044755 254 EEKILIILDNIWKC--------VDLEAV-----------GIPFGDDHKGCK--LLLTARDRNVLFR-----MGSQKNFSI 307 (1079)
Q Consensus 254 ~~~~LlvlDdv~~~--------~~~~~l-----------~~~l~~~~~gs~--iivTtR~~~v~~~-----~~~~~~~~l 307 (1079)
..+-+|||||++-. .+|... ..-+ ...+.+ +|.|.....-... .-.+.++.|
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y--~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L 570 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIY--LKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIAL 570 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHH--HccCcEEEEEEechhhhhcChhhcCccceEEEEec
Confidence 58899999998753 122211 0111 223344 4444443322221 112347789
Q ss_pred CCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCC
Q 044755 308 DILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGL 346 (1079)
Q Consensus 308 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 346 (1079)
..+..++-.++++........ ....+...-++.+|+|.
T Consensus 571 ~ap~~~~R~~IL~~~~s~~~~-~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 571 PAPAVTRRKEILTTIFSKNLS-DITMDDLDFLSVKTEGY 608 (952)
T ss_pred CCcchhHHHHHHHHHHHhhhh-hhhhHHHHHHHHhcCCc
Confidence 999988888887776633221 11122233377788774
No 243
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.17 E-value=0.17 Score=51.70 Aligned_cols=203 Identities=14% Similarity=0.173 Sum_probs=113.6
Q ss_pred ccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhh----cCCCCEEEEEEeCCcc-------------
Q 044755 156 AFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQARE----DKLFDLVVFSEVSQTL------------- 218 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~~~~~------------- 218 (1079)
...++++....+.......+.+-.-++|+.|.||-|.+..+.++.-. +-.-+...|.+-+...
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 35566777777776666677899999999999999999988877532 1123445566554431
Q ss_pred --------CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcE-EEEEeCCCCc--cccccccCCCCCCCCCcEEE
Q 044755 219 --------DIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKI-LIILDNIWKC--VDLEAVGIPFGDDHKGCKLL 287 (1079)
Q Consensus 219 --------~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~-LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ii 287 (1079)
.-.-+..++++..+...+-+ ....+.| ++|+-.+++. ++-..++...-.-.+.+|+|
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qie------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI 161 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQIE------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI 161 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcchh------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 12233444444433211100 0012444 4445555442 22222222222223466777
Q ss_pred EEecCh--hhhhhcCCCceEeCCCCCHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHHcCCCc-hHHHHHHHHHh-cC--
Q 044755 288 LTARDR--NVLFRMGSQKNFSIDILNEEEAWRLFKLMADD-HVENRELQSTATEVAQACKGLP-IALTTIARALR-NK-- 360 (1079)
Q Consensus 288 vTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~glP-lai~~~~~~l~-~~-- 360 (1079)
+..-+- -+...-...-.+.+...+++|....+.+.+.. .-.-| .+++.+|+++++|.- -|+-++ -.++ ++
T Consensus 162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllml-E~~~~~n~~ 238 (351)
T KOG2035|consen 162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLML-EAVRVNNEP 238 (351)
T ss_pred EEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHH-HHHHhcccc
Confidence 643322 11111122346889999999999999998832 22222 678999999998864 343333 2222 11
Q ss_pred --------ChhHHHHHHHHhc
Q 044755 361 --------SVPEWKSALQELR 373 (1079)
Q Consensus 361 --------~~~~w~~~~~~l~ 373 (1079)
...+|+.+..++.
T Consensus 239 ~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 239 FTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred ccccCCCCCCccHHHHHHHHH
Confidence 2357998887753
No 244
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.17 E-value=0.027 Score=60.66 Aligned_cols=88 Identities=19% Similarity=0.298 Sum_probs=50.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHc
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT-LDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKK 253 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (1079)
..+++.++|+.|+||||++..++.....+..-..+..|+.... ....+.+....+.++.+................+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~- 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR- 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-
Confidence 3469999999999999999999877653311124566665432 12233444445555655433333333334444443
Q ss_pred CCcEEEEEeCC
Q 044755 254 EEKILIILDNI 264 (1079)
Q Consensus 254 ~~~~LlvlDdv 264 (1079)
..=+|++|..
T Consensus 272 -~~d~vliDt~ 281 (282)
T TIGR03499 272 -DKDLILIDTA 281 (282)
T ss_pred -CCCEEEEeCC
Confidence 2346777753
No 245
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.055 Score=59.35 Aligned_cols=90 Identities=21% Similarity=0.272 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHc
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT-LDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKK 253 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (1079)
+.++|+++|.+|+||||++..++.....+ .+ .+..++.... ....+-++..++.++.+................+.+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~-Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-KK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc-CC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 35799999999999999999998776532 22 3445555332 223333445555666554432333333344444442
Q ss_pred C-CcEEEEEeCCCC
Q 044755 254 E-EKILIILDNIWK 266 (1079)
Q Consensus 254 ~-~~~LlvlDdv~~ 266 (1079)
. +.=+|++|-.-.
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 1 234667776543
No 246
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.16 E-value=0.027 Score=59.07 Aligned_cols=90 Identities=22% Similarity=0.366 Sum_probs=57.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCc-------cccchH------
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTL-DIKKIQQEIAEKLGLVL-------EEETGS------ 241 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~------ 241 (1079)
-.-++|+|..|+|||||++.+++..+.+ +-+.++++-+.+.. .+.++.+++...-.... .++...
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999999987642 22556777776654 45666666654321110 011111
Q ss_pred HHHHHHHHHHH-c-CCcEEEEEeCCCC
Q 044755 242 RRASRLYERLK-K-EEKILIILDNIWK 266 (1079)
Q Consensus 242 ~~~~~l~~~l~-~-~~~~LlvlDdv~~ 266 (1079)
..+..+.+++. + ++.+|+++||+-.
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 11233445554 3 8999999999854
No 247
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.14 E-value=0.00086 Score=79.66 Aligned_cols=116 Identities=20% Similarity=0.217 Sum_probs=62.8
Q ss_pred ccccceeeecccc-eeeecCCCCccccccccccceEEEEccCcccccccccchhhhccccceEEEeccc---ccceeecc
Q 044755 918 LSNLEVLEMNKVN-IEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCK---GLQEIISK 993 (1079)
Q Consensus 918 l~~L~~L~l~~~~-l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~---~l~~i~~~ 993 (1079)
+++|+.|.+.+|. +++-. -......+++|++|+|++|..+++........++++|+.|.+..+. .+++....
T Consensus 268 c~~L~~L~l~~c~~lt~~g----l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~ 343 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEG----LVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLS 343 (482)
T ss_pred CCCcceEccCCCCccchhH----HHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHH
Confidence 4566666655552 33210 0112345688888899888887654334445567766665554443 45444211
Q ss_pred cccccccCCcccc-cccCeeecccCCCccccCCCccccCCCCcc-EEEEecCCCc
Q 044755 994 EGADDQVLPNFVF-PQVTSLRLSGLPELKCLYPGMHTSEWPALK-LLKVSDCDQV 1046 (1079)
Q Consensus 994 ~~~~~~~~~~~~l-~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~-~L~i~~C~~L 1046 (1079)
.... .. -.+..+.+.+|++++.+-..... ..... .+.+.+||.|
T Consensus 344 ~~~~-------~~~d~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 344 GLLT-------LTSDDLAELILRSCPKLTDLSLSYCG--ISDLGLELSLRGCPNL 389 (482)
T ss_pred Hhhc-------cCchhHhHHHHhcCCCcchhhhhhhh--ccCcchHHHhcCCccc
Confidence 1110 01 15777778888888776443221 12222 4666778877
No 248
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.13 E-value=0.023 Score=54.68 Aligned_cols=122 Identities=17% Similarity=0.249 Sum_probs=71.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC---------------------cc----------------
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ---------------------TL---------------- 218 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~---------------------~~---------------- 218 (1079)
-..+.++|..|.|||||.+.+|...+.. .+.+|+.--+ .+
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 4688999999999999999999887643 3345543211 00
Q ss_pred -----CHHHHHH---HHHHHhCCCcc-------ccchHHHHHHHHHHHHcCCcEEEEEeC----CCCccccccccCCCCC
Q 044755 219 -----DIKKIQQ---EIAEKLGLVLE-------EETGSRRASRLYERLKKEEKILIILDN----IWKCVDLEAVGIPFGD 279 (1079)
Q Consensus 219 -----~~~~~~~---~i~~~l~~~~~-------~~~~~~~~~~l~~~l~~~~~~LlvlDd----v~~~~~~~~l~~~l~~ 279 (1079)
...++-+ +.++..+.... -+..+++...+.+.+- +++-+++=|. ++....|+-+...-.-
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV-~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIV-NQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHc-cCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 1112222 22333332211 1223333444555555 6888888884 4444556643222222
Q ss_pred CCCCcEEEEEecChhhhhhcCC
Q 044755 280 DHKGCKLLLTARDRNVLFRMGS 301 (1079)
Q Consensus 280 ~~~gs~iivTtR~~~v~~~~~~ 301 (1079)
+..|..|+++|.+......+..
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred hhcCcEEEEEeccHHHHHhccC
Confidence 4569999999999988776543
No 249
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.09 E-value=0.0026 Score=64.36 Aligned_cols=100 Identities=26% Similarity=0.313 Sum_probs=48.2
Q ss_pred CCcceEEEecCccccccCccccccccccEEecccc--ccCC--cccccCCcccceeeccCCcCcccC--hhhccCCcccE
Q 044755 553 MRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVEC--MLDD--IAIIGKLKNLEILSFWGSVIVMLP--EELGHLTKLRQ 626 (1079)
Q Consensus 553 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~--~l~~--~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~ 626 (1079)
+..|..|++.+..++.+ ..+-.|++|++|.++.| ++.. +....++++|++|++++|+++.+. .....+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 33444444444443332 12234566777777666 3332 333445566777777766554321 12345556666
Q ss_pred Eccccccccccc--Chhhhhcccccceee
Q 044755 627 LDLSNCFKLKVI--APNVISRLVRLEELY 653 (1079)
Q Consensus 627 L~l~~~~~l~~~--~~~~l~~L~~L~~L~ 653 (1079)
|++.+|....-. -...+.-|++|.+|+
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhcccc
Confidence 666665322211 122234455555555
No 250
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.08 E-value=0.022 Score=61.55 Aligned_cols=85 Identities=24% Similarity=0.332 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCcc------ccchHHHHHHHH
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLE------EETGSRRASRLY 248 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 248 (1079)
.-+++-|+|.+|+||||||.++....... -..++||+....++.. .+++++...+ ....++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34799999999999999999987776432 3557899887766653 4556655332 122222233333
Q ss_pred HHHHcCCcEEEEEeCCCC
Q 044755 249 ERLKKEEKILIILDNIWK 266 (1079)
Q Consensus 249 ~~l~~~~~~LlvlDdv~~ 266 (1079)
..+..+..-+||+|.|..
T Consensus 127 ~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHhhccCCcEEEEcchhh
Confidence 333345677999998854
No 251
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.07 E-value=0.46 Score=54.52 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=39.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCc
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGLVL 235 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 235 (1079)
..|++++|+.|+||||++.+++.....++.-..+..|+... .....+-++..++..+.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 36999999999999999999987764332222455665543 2233444555566666544
No 252
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.03 E-value=0.025 Score=66.68 Aligned_cols=49 Identities=29% Similarity=0.417 Sum_probs=39.4
Q ss_pred CCccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 152 KGYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
.....++|.+..++.+...+......-+.|+|..|+|||++|+.+++..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3344678999888888887765555667899999999999999998754
No 253
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.02 E-value=0.016 Score=61.51 Aligned_cols=54 Identities=22% Similarity=0.320 Sum_probs=39.9
Q ss_pred ccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHH-hhhcCCCCEE
Q 044755 156 AFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQ-AREDKLFDLV 209 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~ 209 (1079)
++-+|..+-.--+++|.++++..|.+.|.+|.|||.||-+..=. .-.++.|..+
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Ki 279 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKI 279 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceE
Confidence 44567777777788999999999999999999999988765422 2223445443
No 254
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.01 E-value=0.05 Score=56.66 Aligned_cols=89 Identities=19% Similarity=0.234 Sum_probs=52.5
Q ss_pred HHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccch
Q 044755 163 ALKSVQNALTD--VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETG 240 (1079)
Q Consensus 163 ~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 240 (1079)
.+..+.++..+ .....+.++|.+|+|||+||.++++....+ -..++++++ .+++..+-..... ..
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it~------~~l~~~l~~~~~~--~~--- 150 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIITV------ADIMSAMKDTFSN--SE--- 150 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEH------HHHHHHHHHHHhh--cc---
Confidence 34444444432 223578899999999999999999987533 235566643 4444444333210 00
Q ss_pred HHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 044755 241 SRRASRLYERLKKEEKILIILDNIWKC 267 (1079)
Q Consensus 241 ~~~~~~l~~~l~~~~~~LlvlDdv~~~ 267 (1079)
.....+.+.+. +.=+||+||+...
T Consensus 151 -~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 151 -TSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred -ccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 11223445554 4458888999654
No 255
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.41 Score=48.02 Aligned_cols=95 Identities=24% Similarity=0.302 Sum_probs=58.0
Q ss_pred CccccccHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccC
Q 044755 153 GYEAFESRLCALKSVQNALT-------------DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLD 219 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 219 (1079)
.+.++.|.|-.++++.++.. =+..+-|.++|++|.|||.||++|++.-.. .| +.|-..
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a--~f-----irvvgs-- 223 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA--AF-----IRVVGS-- 223 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccch--he-----eeeccH--
Confidence 44456677777777766653 134677889999999999999999987642 23 333221
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 044755 220 IKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC 267 (1079)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 267 (1079)
+.. -+.+|. ....+..+++-.+++.+-+|++|.++..
T Consensus 224 --efv---qkylge------gprmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 224 --EFV---QKYLGE------GPRMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred --HHH---HHHhcc------CcHHHHHHHHHHhccCCcEEEeehhhhH
Confidence 111 112221 1123344455555678889999988753
No 256
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.15 Score=56.27 Aligned_cols=149 Identities=13% Similarity=0.141 Sum_probs=81.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCc
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEK 256 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1079)
|=-.++|++|+|||+++.++++... ||... ...+...+-.+ ++.++... ..+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~~n~d-Lr~LL~~t----------------------~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVKLDSD-LRHLLLAT----------------------PNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeeccccCcHH-HHHHHHhC----------------------CCC
Confidence 4456899999999999999999875 55332 22222222222 33333221 355
Q ss_pred EEEEEeCCCCcccc-----------c---------cccCCCCC--CCC-CcEE-EEEecChhhhhh--c---CCCceEeC
Q 044755 257 ILIILDNIWKCVDL-----------E---------AVGIPFGD--DHK-GCKL-LLTARDRNVLFR--M---GSQKNFSI 307 (1079)
Q Consensus 257 ~LlvlDdv~~~~~~-----------~---------~l~~~l~~--~~~-gs~i-ivTtR~~~v~~~--~---~~~~~~~l 307 (1079)
-+||+.|++-..+. + -+...+.. ... +=|| |.||-..+-.+. + ..+..|.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 56666666543110 0 01111111 111 2355 457766544332 2 23457899
Q ss_pred CCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 044755 308 DILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIARAL 357 (1079)
Q Consensus 308 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 357 (1079)
+-=+.+.-..||....+....+ .++.+|.+...|.-+.=..+|..|
T Consensus 368 gyCtf~~fK~La~nYL~~~~~h----~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEEDH----RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCCCc----chhHHHHHHhhcCccCHHHHHHHH
Confidence 9999999999999998654322 345556555555544444444444
No 257
>PRK09183 transposase/IS protein; Provisional
Probab=95.98 E-value=0.012 Score=62.30 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..+.|+|+.|+|||+||..+.+...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4677999999999999999987754
No 258
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.98 E-value=0.35 Score=54.50 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=36.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGLV 234 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 234 (1079)
...+|.++|..|+||||++..++...+.+ .+ .++.|++.. .....+-++..++..+.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~-kV~lV~~D~~R~aA~eQLk~~a~~~~vp 157 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK-GF-KPCLVCADTFRAGAFDQLKQNATKARIP 157 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CC-CEEEEcCcccchhHHHHHHHHhhccCCe
Confidence 35799999999999999999998776533 23 344554432 223333344455555544
No 259
>PRK09354 recA recombinase A; Provisional
Probab=95.91 E-value=0.031 Score=60.96 Aligned_cols=85 Identities=26% Similarity=0.340 Sum_probs=56.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCcc------ccchHHHHHHHH
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLE------EETGSRRASRLY 248 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 248 (1079)
.-+++-|+|++|+||||||.++....... -..++||+....++. ..+++++...+ ....++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 35799999999999999999988766532 356899999887775 34566665432 122222233333
Q ss_pred HHHHcCCcEEEEEeCCCC
Q 044755 249 ERLKKEEKILIILDNIWK 266 (1079)
Q Consensus 249 ~~l~~~~~~LlvlDdv~~ 266 (1079)
..+..+..-+||+|-|-.
T Consensus 132 ~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHhhcCCCCEEEEeChhh
Confidence 333445677999999854
No 260
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.90 E-value=0.027 Score=60.91 Aligned_cols=84 Identities=27% Similarity=0.365 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccc-----cchHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEE-----ETGSRRASRLYER 250 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 250 (1079)
-+++-|+|++|+||||||.+++...... -..++||+....++.. .+++++...+. ....+.+..+.+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 5789999999999999999987765422 3568899988776653 45555543221 1122222233333
Q ss_pred H-HcCCcEEEEEeCCCC
Q 044755 251 L-KKEEKILIILDNIWK 266 (1079)
Q Consensus 251 l-~~~~~~LlvlDdv~~ 266 (1079)
+ ..+.--+||+|.|-.
T Consensus 128 li~s~~~~lIVIDSvaa 144 (325)
T cd00983 128 LVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHhccCCCEEEEcchHh
Confidence 3 345667999998754
No 261
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.90 E-value=0.52 Score=56.91 Aligned_cols=88 Identities=15% Similarity=0.208 Sum_probs=53.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKE 254 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1079)
.+|+.++|+.|+||||.+.+++......+.-..+..++... .....+-++...+.++.+.....+........+.+. +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-D 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-C
Confidence 46999999999999999999887664222223456665542 222455666777777765543223333334444443 2
Q ss_pred CcEEEEEeCCC
Q 044755 255 EKILIILDNIW 265 (1079)
Q Consensus 255 ~~~LlvlDdv~ 265 (1079)
+ =+|++|-.-
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 3 377778664
No 262
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.88 E-value=0.073 Score=56.29 Aligned_cols=57 Identities=33% Similarity=0.467 Sum_probs=42.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDK----LFDLVVFSEVSQTLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1079)
-.+.=|+|.+|+|||.|+.+++-...... .=..++|++-...++...+. +|+++.+.
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~ 98 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGL 98 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcccc
Confidence 35899999999999999998876643221 12469999999999888776 46666544
No 263
>PRK06696 uridine kinase; Validated
Probab=95.83 E-value=0.015 Score=60.51 Aligned_cols=43 Identities=26% Similarity=0.317 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 159 SRLCALKSVQNALT---DVNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 159 gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.|.+.+++|.+.+. .++..+|+|.|.+|+||||+|+.+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46677788888775 45678999999999999999999998875
No 264
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.82 E-value=0.013 Score=64.03 Aligned_cols=101 Identities=16% Similarity=0.235 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCc
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEK 256 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1079)
.-+.++|..|+|||+||..+++....+. ..++|+++.. ++..+...-. .... + .....+.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~~~------l~~~l~~~~~---~~~~--~-~~~~~~~l~--~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTADE------LIEILREIRF---NNDK--E-LEEVYDLLI--NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEHHH------HHHHHHHHHh---ccch--h-HHHHHHHhc--cC
Confidence 7799999999999999999999875332 3566766543 3333332110 0000 1 111134443 34
Q ss_pred EEEEEeCCCCc--cccc--cccCCCCCC-CCCcEEEEEecCh
Q 044755 257 ILIILDNIWKC--VDLE--AVGIPFGDD-HKGCKLLLTARDR 293 (1079)
Q Consensus 257 ~LlvlDdv~~~--~~~~--~l~~~l~~~-~~gs~iivTtR~~ 293 (1079)
=|||+||+... ..|. .+...+... ..+-.+||||...
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 58999999654 2332 222222111 1244688888743
No 265
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.81 E-value=0.38 Score=53.48 Aligned_cols=42 Identities=21% Similarity=0.444 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044755 162 CALKSVQNALTD---VNVSIVGVYGMGGIGKTTLVKEVARQARED 203 (1079)
Q Consensus 162 ~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (1079)
...+.+.+.+.+ ....+|+|.|.=|+||||+.+++.+..+..
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 445666666663 467899999999999999999999888754
No 266
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.79 E-value=0.03 Score=55.81 Aligned_cols=37 Identities=24% Similarity=0.456 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEE
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSE 213 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 213 (1079)
...+|.++|+.|.||||+|+.+++.... .+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~--~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL--KYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEEe
Confidence 3469999999999999999999988763 355555553
No 267
>PRK06921 hypothetical protein; Provisional
Probab=95.77 E-value=0.046 Score=58.15 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=44.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKE 254 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1079)
....+.++|..|+|||+||.++++....+. -..++|++.. +++..+.... .......+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~~~~-- 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPFV------EGFGDLKDDF----------DLLEAKLNRMK-- 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEHH------HHHHHHHHHH----------HHHHHHHHHhc--
Confidence 456789999999999999999999875321 2446677642 3333332221 01122233342
Q ss_pred CcEEEEEeCC
Q 044755 255 EKILIILDNI 264 (1079)
Q Consensus 255 ~~~LlvlDdv 264 (1079)
+-=|||+||+
T Consensus 177 ~~dlLiIDDl 186 (266)
T PRK06921 177 KVEVLFIDDL 186 (266)
T ss_pred CCCEEEEecc
Confidence 4569999999
No 268
>PRK04132 replication factor C small subunit; Provisional
Probab=95.71 E-value=0.19 Score=61.46 Aligned_cols=151 Identities=12% Similarity=0.082 Sum_probs=91.6
Q ss_pred CCCCcHHHHHHHHHHHhhhcCCC-CEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEe
Q 044755 184 MGGIGKTTLVKEVARQAREDKLF-DLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILD 262 (1079)
Q Consensus 184 ~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlD 262 (1079)
+.++||||+|..++++.-.+ .+ ..++-++++....+..+. ++++.+....+ +...+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~--------------~~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELFGE-NWRHNFLELNASDERGINVIR-EKVKEFARTKP--------------IGGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC--------------cCCCCCEEEEEE
Confidence 67899999999999986322 12 246778888765555433 33332210000 001245799999
Q ss_pred CCCCcc--ccccccCCCCCCCCCcEEEEEecCh-hhhhhc-CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 044755 263 NIWKCV--DLEAVGIPFGDDHKGCKLLLTARDR-NVLFRM-GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATE 338 (1079)
Q Consensus 263 dv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 338 (1079)
+++... +...+...+-.....+++|++|.+. .+.... .....+.+.+++.++-...+...+..... .-..+....
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~i~~e~L~~ 716 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-ELTEEGLQA 716 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHH
Confidence 998863 4444444443333456666666544 332222 23458999999999999888877632111 112456889
Q ss_pred HHHHcCCCchHHH
Q 044755 339 VAQACKGLPIALT 351 (1079)
Q Consensus 339 i~~~~~glPlai~ 351 (1079)
|++.++|-+-.+.
T Consensus 717 Ia~~s~GDlR~AI 729 (846)
T PRK04132 717 ILYIAEGDMRRAI 729 (846)
T ss_pred HHHHcCCCHHHHH
Confidence 9999999774433
No 269
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.65 E-value=0.074 Score=52.18 Aligned_cols=40 Identities=28% Similarity=0.437 Sum_probs=31.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccC
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLD 219 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 219 (1079)
++.|+|.+|+||||++..+...... +-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 4689999999999999999888753 345678888876543
No 270
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.64 E-value=0.052 Score=61.98 Aligned_cols=88 Identities=19% Similarity=0.308 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKE 254 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1079)
..+|+|+|.+|+||||++..+......+.....+..++... .....+.++...+.++................+.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc--
Confidence 47999999999999999999887654332233455555432 222233344444555554443333333444444443
Q ss_pred CcEEEEEeCCC
Q 044755 255 EKILIILDNIW 265 (1079)
Q Consensus 255 ~~~LlvlDdv~ 265 (1079)
..=+|++|..-
T Consensus 428 ~~DLVLIDTaG 438 (559)
T PRK12727 428 DYKLVLIDTAG 438 (559)
T ss_pred cCCEEEecCCC
Confidence 34578888764
No 271
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.64 E-value=0.077 Score=55.47 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=36.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCEEEEEEeCCccCHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDK----LFDLVVFSEVSQTLDIKKIQ 224 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~ 224 (1079)
-.++.|+|.+|+|||+||.+++....... .=..++|++....++...+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 46999999999999999999987653221 01567899988777765544
No 272
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.057 Score=58.60 Aligned_cols=86 Identities=24% Similarity=0.349 Sum_probs=61.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCcccc--chHHHHHHHHHHHHc
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEE--TGSRRASRLYERLKK 253 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 253 (1079)
-.+|.|-|-+|+|||||.-++..+...+. .++||+-.+.. .+ .+--+++++.+.+.- -.+...+.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~--~Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESL--QQ-IKLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCH--HH-HHHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 46999999999999999999999987443 68888776643 22 234466676544321 122335667777777
Q ss_pred CCcEEEEEeCCCCc
Q 044755 254 EEKILIILDNIWKC 267 (1079)
Q Consensus 254 ~~~~LlvlDdv~~~ 267 (1079)
.++-++|+|-+...
T Consensus 167 ~~p~lvVIDSIQT~ 180 (456)
T COG1066 167 EKPDLVVIDSIQTL 180 (456)
T ss_pred cCCCEEEEecccee
Confidence 89999999998653
No 273
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.63 E-value=0.037 Score=51.75 Aligned_cols=46 Identities=30% Similarity=0.526 Sum_probs=36.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCcc
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLE 236 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 236 (1079)
+|.|.|.+|.||||+|+.+++...-+ + .+.-.+++++++..|+...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~------vsaG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------L------VSAGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------e------eeccHHHHHHHHHcCCCHH
Confidence 68999999999999999999987532 1 1344789999999887654
No 274
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.63 E-value=0.058 Score=60.09 Aligned_cols=139 Identities=17% Similarity=0.130 Sum_probs=80.4
Q ss_pred cccHHHHHHHHHHHhc-CCCceE-EEEEcCCCCcHHHHHHHHHHHhhhcC-------------------CCCEEEEEEeC
Q 044755 157 FESRLCALKSVQNALT-DVNVSI-VGVYGMGGIGKTTLVKEVARQAREDK-------------------LFDLVVFSEVS 215 (1079)
Q Consensus 157 ~~gr~~~~~~l~~~l~-~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~~~ 215 (1079)
+++-+....++..+.. .++.+- +-++|+.|+||||+|..+++..-... ...-+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 3455666777777776 344555 99999999999999999998875322 12345555555
Q ss_pred CccC---HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEEEe
Q 044755 216 QTLD---IKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLLTA 290 (1079)
Q Consensus 216 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTt 290 (1079)
.... ..+..+++.+....... .++.-++++|+++... .-..+...+-.....+++|++|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 5444 34444444443332111 2567788999998752 2223333333334566777777
Q ss_pred cCh-hhhhhc-CCCceEeCCCCC
Q 044755 291 RDR-NVLFRM-GSQKNFSIDILN 311 (1079)
Q Consensus 291 R~~-~v~~~~-~~~~~~~l~~L~ 311 (1079)
... .+.... .....+++.+.+
T Consensus 147 n~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred CChhhccchhhhcceeeecCCch
Confidence 733 332222 223456676633
No 275
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.23 Score=58.81 Aligned_cols=131 Identities=21% Similarity=0.291 Sum_probs=76.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKE 254 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1079)
..+.+-++|++|.|||.||+++++... .+| +.+... +++.+- +| .....+..++..-.+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~--~~f-----i~v~~~----~l~sk~---vG------esek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESR--SRF-----ISVKGS----ELLSKW---VG------ESEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCC--CeE-----EEeeCH----HHhccc---cc------hHHHHHHHHHHHHHcC
Confidence 456889999999999999999999654 223 222221 111100 00 1112233444444457
Q ss_pred CcEEEEEeCCCCccccc-------------cccCCCC--CCCCCcEEEEEecChhhhhh---c--CCCceEeCCCCCHHH
Q 044755 255 EKILIILDNIWKCVDLE-------------AVGIPFG--DDHKGCKLLLTARDRNVLFR---M--GSQKNFSIDILNEEE 314 (1079)
Q Consensus 255 ~~~LlvlDdv~~~~~~~-------------~l~~~l~--~~~~gs~iivTtR~~~v~~~---~--~~~~~~~l~~L~~~~ 314 (1079)
.+..|++|+++....+. .+...+. ....+..||-||-....... . .-+..+.+.+-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 89999999997653222 1111221 12233344555554433331 1 335689999999999
Q ss_pred HHHHHHHHhcC
Q 044755 315 AWRLFKLMADD 325 (1079)
Q Consensus 315 ~~~lf~~~~~~ 325 (1079)
..+.|+.+...
T Consensus 415 r~~i~~~~~~~ 425 (494)
T COG0464 415 RLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHhcc
Confidence 99999999853
No 276
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.017 Score=53.89 Aligned_cols=35 Identities=34% Similarity=0.475 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEE
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFS 212 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (1079)
--|.|.|++|+||||+++.+.+..+.+. |...-++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG-YKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC-ceeeeEE
Confidence 3589999999999999999999887543 5444333
No 277
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.59 E-value=0.072 Score=55.63 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQARE 202 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (1079)
....+|+|.|..|.|||||++.+....+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56789999999999999999999988764
No 278
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.56 E-value=0.046 Score=68.39 Aligned_cols=106 Identities=21% Similarity=0.269 Sum_probs=59.2
Q ss_pred cccccHHHHHHHHHHHhc-------CCC--ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHH
Q 044755 155 EAFESRLCALKSVQNALT-------DVN--VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQ 225 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~-------~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 225 (1079)
..++|.+..++.+.+.+. +.+ ..++.++|+.|+|||+||+.+++..-.. -...+.++.+...+...+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccHHH
Confidence 346788888888888775 111 3456789999999999999999875321 12344445444322221111
Q ss_pred HHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 044755 226 EIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC 267 (1079)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 267 (1079)
-.+.+. +-..-+....+.+.+.+...-++++|+++..
T Consensus 587 ----l~g~~~-gyvg~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 587 ----LIGSPP-GYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred ----hcCCCC-cccCcCccchHHHHHHhCCCeEEEECChhhC
Confidence 112111 0000111123445555433458889999875
No 279
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.53 E-value=0.033 Score=64.40 Aligned_cols=73 Identities=25% Similarity=0.312 Sum_probs=54.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHH-HcC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERL-KKE 254 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~ 254 (1079)
-++.-++|++|+||||||.-++++.. | .++=|++|+..+...+-+.|...+.... .+ -.+
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s--------------~l~ads 386 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHS--------------VLDADS 386 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcc--------------ccccCC
Confidence 57999999999999999999998864 3 3778899988888777777765543211 11 025
Q ss_pred CcEEEEEeCCCCc
Q 044755 255 EKILIILDNIWKC 267 (1079)
Q Consensus 255 ~~~LlvlDdv~~~ 267 (1079)
++.-||+|.++..
T Consensus 387 rP~CLViDEIDGa 399 (877)
T KOG1969|consen 387 RPVCLVIDEIDGA 399 (877)
T ss_pred CcceEEEecccCC
Confidence 7888899998764
No 280
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.51 E-value=0.071 Score=58.02 Aligned_cols=58 Identities=28% Similarity=0.333 Sum_probs=43.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhc----CCCCEEEEEEeCCccCHHHHHHHHHHHhCCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQARED----KLFDLVVFSEVSQTLDIKKIQQEIAEKLGLV 234 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1079)
-+++-|+|.+|+|||+|+.+++-..... ..=..++||+....++++.+.+ ++++++..
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d 157 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVD 157 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 4689999999999999999876543221 1124689999999888888764 56666653
No 281
>PTZ00494 tuzin-like protein; Provisional
Probab=95.50 E-value=2.5 Score=46.77 Aligned_cols=163 Identities=15% Similarity=0.118 Sum_probs=93.9
Q ss_pred CCccccccHHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHH
Q 044755 152 KGYEAFESRLCALKSVQNALT---DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIA 228 (1079)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 228 (1079)
.....++.|+.+-.-+...|. ..+++++.+.|.-|.||++|.+....+... ..++|++... ++-++.+.
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDtLrsVV 439 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDTLRSVV 439 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cchHHHHH
Confidence 344467788877665555554 457899999999999999999998877642 3678888765 45678888
Q ss_pred HHhCCCcccc--chHHHHHHHHHHH---HcCCcEEEEEeCCCCccccccc---cCCCCCCCCCcEEEEEecChhhhhh--
Q 044755 229 EKLGLVLEEE--TGSRRASRLYERL---KKEEKILIILDNIWKCVDLEAV---GIPFGDDHKGCKLLLTARDRNVLFR-- 298 (1079)
Q Consensus 229 ~~l~~~~~~~--~~~~~~~~l~~~l---~~~~~~LlvlDdv~~~~~~~~l---~~~l~~~~~gs~iivTtR~~~v~~~-- 298 (1079)
+.++.+.-+. +.-+-+..-...- ..++.-+||+-=-+. ..+..+ ...+.....-|.|++----+..-..
T Consensus 440 KALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREG-ssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 440 RALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREG-SDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNV 518 (664)
T ss_pred HHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccC-CcHHHHHHHHHHHHccchhheeeeechHhhhchhhc
Confidence 8998765431 1111111111111 124555555531111 111110 0112222334566654333322111
Q ss_pred -cCCCceEeCCCCCHHHHHHHHHHHh
Q 044755 299 -MGSQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 299 -~~~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
...-..|-+.+++.++|.++-++..
T Consensus 519 ~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 519 SSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred cCccceeEecCCcCHHHHHHHHhccc
Confidence 1223468899999999999887765
No 282
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.50 E-value=0.064 Score=59.70 Aligned_cols=84 Identities=19% Similarity=0.222 Sum_probs=46.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKE 254 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1079)
..++.++|++|+||||++..++........+ .+..++... .......++..++.++.+.... .....+.+.+.+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~---~~~~~l~~~l~~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPV---KDIKKFKETLARD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeeh---HHHHHHHHHHHhC
Confidence 4689999999999999999998765322222 233343322 2223344455556666544321 1123344444432
Q ss_pred CcEEEEEeC
Q 044755 255 EKILIILDN 263 (1079)
Q Consensus 255 ~~~LlvlDd 263 (1079)
..=+||+|-
T Consensus 299 ~~D~VLIDT 307 (432)
T PRK12724 299 GSELILIDT 307 (432)
T ss_pred CCCEEEEeC
Confidence 334588884
No 283
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.4 Score=48.34 Aligned_cols=55 Identities=22% Similarity=0.193 Sum_probs=42.8
Q ss_pred cccccCCccccccHHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 147 WLKSRKGYEAFESRLCALKSVQNALTD-------------VNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 147 ~~~~~~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
+..+...+.++.|-++.++++++++.= ...+-+..+|++|.|||-+|++.+.+-.
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 444555667788899999999998750 1356788999999999999999887643
No 284
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.46 E-value=0.079 Score=58.12 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=43.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhc----CCCCEEEEEEeCCccCHHHHHHHHHHHhCCC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQARED----KLFDLVVFSEVSQTLDIKKIQQEIAEKLGLV 234 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1079)
.-+++-|+|.+|+|||+|+.+++-..... ..-..++||+....++++.+.+ ++++++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 34688899999999999999886443221 1124689999999999888765 56666654
No 285
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.11 Score=56.88 Aligned_cols=90 Identities=21% Similarity=0.213 Sum_probs=55.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHc
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTL-DIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKK 253 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (1079)
+.+++.++|+.|+||||++..++.....+. ..+.+|+..... ...+-++..++.++.+.....+........+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 357999999999999999999987764332 346677765432 33455666777777654433333333444444431
Q ss_pred -CCcEEEEEeCCCC
Q 044755 254 -EEKILIILDNIWK 266 (1079)
Q Consensus 254 -~~~~LlvlDdv~~ 266 (1079)
+..=+|++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 2345777786643
No 286
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.44 E-value=0.055 Score=55.11 Aligned_cols=96 Identities=22% Similarity=0.414 Sum_probs=58.7
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCc-------cc
Q 044755 167 VQNALTD-VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT-LDIKKIQQEIAEKLGLVL-------EE 237 (1079)
Q Consensus 167 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~ 237 (1079)
.++.+.. .+-.-++|+|.+|+|||+|+.++.+... -+.++++-+++. ..+.++.+++...-.... ..
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~ 80 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSD 80 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETT
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccch
Confidence 3455541 1235789999999999999999998874 356688888755 456666666643311111 11
Q ss_pred cchHH------HHHHHHHHHH-cCCcEEEEEeCCCC
Q 044755 238 ETGSR------RASRLYERLK-KEEKILIILDNIWK 266 (1079)
Q Consensus 238 ~~~~~------~~~~l~~~l~-~~~~~LlvlDdv~~ 266 (1079)
+.... ..-.+.+++. +++++|+++||+-.
T Consensus 81 ~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 81 EPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred hhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHH
Confidence 11111 1122333333 48999999999843
No 287
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.35 E-value=0.053 Score=54.47 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
||.|+|++|+||||+|+.+++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999988653
No 288
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.33 E-value=0.083 Score=52.49 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=33.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCC
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT-LDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~ 233 (1079)
++.++|++|+||||+++.++...... .+ .++.++.... ....+.+...+.+.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~-g~-~v~~i~~D~~~~~~~~~l~~~~~~~~~ 56 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK-GK-KVLLVAADTYRPAAIEQLRVLGEQVGV 56 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC-cEEEEEcCCCChHHHHHHHHhcccCCe
Confidence 68899999999999999999876533 12 3444554322 2333444444555554
No 289
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.055 Score=64.64 Aligned_cols=159 Identities=14% Similarity=0.161 Sum_probs=86.7
Q ss_pred CccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCC----CEEEEEEeCCccCHHHHHHHHH
Q 044755 153 GYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLF----DLVVFSEVSQTLDIKKIQQEIA 228 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~i~ 228 (1079)
...+++||++++.++++.|....-.--.++|.+|||||++|.-++...-..+-. +..++. . ++.
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-----L-------D~g 235 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-----L-------DLG 235 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----e-------cHH
Confidence 345678999999999999984322233578999999999999888776432211 111110 0 111
Q ss_pred HHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--------ccc--cccCCCCCCCCCcEEEEEecChhhhh-
Q 044755 229 EKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--------DLE--AVGIPFGDDHKGCKLLLTARDRNVLF- 297 (1079)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--------~~~--~l~~~l~~~~~gs~iivTtR~~~v~~- 297 (1079)
.-.......-.-+++...+.+.+.+..+.+|++|.+.... ..+ .+..|....+.---|-.||-++---.
T Consensus 236 ~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~i 315 (786)
T COG0542 236 SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYI 315 (786)
T ss_pred HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHh
Confidence 1111111111234556677777776669999999987641 011 12112111222222444554431100
Q ss_pred -----hcCCCceEeCCCCCHHHHHHHHHHHh
Q 044755 298 -----RMGSQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 298 -----~~~~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
-......+.++..+.+++..+++-..
T Consensus 316 EKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 316 EKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 01223467777788888877776543
No 290
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.28 E-value=0.11 Score=59.00 Aligned_cols=87 Identities=22% Similarity=0.259 Sum_probs=51.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCccccc----hHHHHHHHHH
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGLVLEEET----GSRRASRLYE 249 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~----~~~~~~~l~~ 249 (1079)
...+|.++|.+|+||||.|..++.....+ .+ .++.|++.. .....+.++.++.+++.+..... ....+....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 46799999999999999999999877633 23 344454432 22335556677777776543221 1111223333
Q ss_pred HHHcCCcEEEEEeCCC
Q 044755 250 RLKKEEKILIILDNIW 265 (1079)
Q Consensus 250 ~l~~~~~~LlvlDdv~ 265 (1079)
.+. +. -+||+|..-
T Consensus 172 ~~~-~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFK-KA-DVIIVDTAG 185 (437)
T ss_pred Hhh-cC-CEEEEECCC
Confidence 333 23 467778663
No 291
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.27 E-value=0.11 Score=54.11 Aligned_cols=45 Identities=24% Similarity=0.412 Sum_probs=35.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKI 223 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 223 (1079)
-.++.|+|.+|+|||++|.+++...... -..++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 5699999999999999999998876532 4678999987 5555443
No 292
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.26 E-value=0.13 Score=53.54 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=35.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1079)
..++.|.|..|+||||+|.++......+ . ..++|++... +..++.+.+ .+++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g-~~~~yi~~e~--~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN-G-YSVSYVSTQL--TTTEFIKQM-MSLGY 76 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC-C-CcEEEEeCCC--CHHHHHHHH-HHhCC
Confidence 4599999999999999987766554222 2 3467777443 556666666 34443
No 293
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.26 E-value=0.19 Score=47.47 Aligned_cols=110 Identities=12% Similarity=0.157 Sum_probs=74.1
Q ss_pred hhhhHH-HHHHHHHhhhhhhhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 044755 2 AEMIFS-LVLEVVKCLAPPTERRVGYLRDYNANFENLRAEIEKLKEESTSIQRRVSEAERNGENIEEKVERWVVSVKKII 80 (1079)
Q Consensus 2 ae~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~~~~~~ 80 (1079)
||.+++ +++.+++.+...+.+...- ....+.-+++|.+.+++|..++++.+..+...+..-+.-++++.+..
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k-------~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L 75 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKK-------SLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELL 75 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHH
Confidence 455554 5555666666555544333 33456677888899999999999888755444555567788999999
Q ss_pred HHHHHHHhhHHHhhcccccCCCCcChhhhhhhhHHHHHHHHHHHHHH
Q 044755 81 DEAAKFIQDEETATNKRCLKGLCPNFKTRYQLSKKAETEVKAAIVEL 127 (1079)
Q Consensus 81 ~~~ed~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~ 127 (1079)
.+++++++.+..- + ..++...++.+++|+++-+. +...
T Consensus 76 ~~g~~LV~k~sk~---~-----r~n~~kk~~y~~Ki~~le~~-l~~f 113 (147)
T PF05659_consen 76 EKGKELVEKCSKV---R-----RWNLYKKPRYARKIEELEES-LRRF 113 (147)
T ss_pred HHHHHHHHHhccc---c-----HHHHHhhHhHHHHHHHHHHH-HHHH
Confidence 9999998865432 1 12445567778888887777 5544
No 294
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.26 E-value=0.4 Score=52.62 Aligned_cols=153 Identities=12% Similarity=0.051 Sum_probs=76.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhc---------------------CCCCEEEEEEeCCccCHHHHHHHHHHHhCCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQARED---------------------KLFDLVVFSEVSQTLDIKKIQQEIAEKLGLV 234 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1079)
...+.++|+.|+||||+|+.++...-.. .|.|.+ ++.-...... -+ .
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~-~~~p~~~~~~----------~g-~ 88 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFY-EITPLSDEPE----------NG-R 88 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEE-EEeccccccc----------cc-c
Confidence 3467899999999999999998875321 122222 2211000000 00 0
Q ss_pred ccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEEEecChh-hhhh-cCCCceEe
Q 044755 235 LEEETGSRRASRLYERLK----KEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLLTARDRN-VLFR-MGSQKNFS 306 (1079)
Q Consensus 235 ~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~~~~ 306 (1079)
.......+.+..+.+.+. .+++=++|+|++...+ .-..+...+.....+..+|++|.+.. +... ......+.
T Consensus 89 ~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~ 168 (325)
T PRK08699 89 KLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMV 168 (325)
T ss_pred cCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhc
Confidence 000011222333333332 1344455668777642 11112111111123466777777654 3322 22245788
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchH
Q 044755 307 IDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIA 349 (1079)
Q Consensus 307 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 349 (1079)
+.+++.++..+.+.+.. . ... ... +..++|-|+.
T Consensus 169 ~~~~~~~~~~~~L~~~~-~---~~~----~~~-l~~~~g~p~~ 202 (325)
T PRK08699 169 LPAPSHEEALAYLRERG-V---AEP----EER-LAFHSGAPLF 202 (325)
T ss_pred CCCCCHHHHHHHHHhcC-C---CcH----HHH-HHHhCCChhh
Confidence 99999999988886542 1 111 111 3468898854
No 295
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.25 E-value=0.11 Score=62.96 Aligned_cols=148 Identities=19% Similarity=0.273 Sum_probs=81.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCc
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEK 256 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1079)
+-|.++|++|+|||++|+.+++.... .| +.++.+. +.. +. .+ ........++.......+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~--~f---~~is~~~------~~~-~~--~g------~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKV--PF---FTISGSD------FVE-MF--VG------VGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC--CE---EEEehHH------hHH-hh--hc------ccHHHHHHHHHHHHhcCC
Confidence 35889999999999999999887642 22 2232221 111 10 01 011122333444444578
Q ss_pred EEEEEeCCCCccc------------c----ccccCCCC--CCCCCcEEEEEecChhhhhh--c---CCCceEeCCCCCHH
Q 044755 257 ILIILDNIWKCVD------------L----EAVGIPFG--DDHKGCKLLLTARDRNVLFR--M---GSQKNFSIDILNEE 313 (1079)
Q Consensus 257 ~LlvlDdv~~~~~------------~----~~l~~~l~--~~~~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~ 313 (1079)
.+|++|+++.... . ..+...+. ....+.-||.||...+.... . .-++.+.++..+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 9999999876411 1 11111111 11234455557776654332 1 23568889999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCC
Q 044755 314 EAWRLFKLMADDHVENRELQSTATEVAQACKGL 346 (1079)
Q Consensus 314 ~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 346 (1079)
+-.+++..+.......++. ....+++.+.|.
T Consensus 326 ~R~~Il~~~~~~~~l~~~~--d~~~la~~t~G~ 356 (644)
T PRK10733 326 GREQILKVHMRRVPLAPDI--DAAIIARGTPGF 356 (644)
T ss_pred HHHHHHHHHhhcCCCCCcC--CHHHHHhhCCCC
Confidence 9999988887432211111 133466666664
No 296
>PRK10867 signal recognition particle protein; Provisional
Probab=95.20 E-value=0.21 Score=56.67 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
...+|.++|.+|+||||.|..++....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999888887665
No 297
>PRK14974 cell division protein FtsY; Provisional
Probab=95.19 E-value=0.17 Score=55.39 Aligned_cols=89 Identities=21% Similarity=0.284 Sum_probs=50.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCcccc----chHHHHHHHHH
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGLVLEEE----TGSRRASRLYE 249 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~l~~ 249 (1079)
+..+|.++|+.|+||||++..++...... .+ .++.++... .....+-++..+..++.+.... .....+....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 46799999999999999999988776532 33 334444321 1223344566677777643211 11111112222
Q ss_pred HHH-cCCcEEEEEeCCCC
Q 044755 250 RLK-KEEKILIILDNIWK 266 (1079)
Q Consensus 250 ~l~-~~~~~LlvlDdv~~ 266 (1079)
... .+.. +|++|-...
T Consensus 217 ~~~~~~~D-vVLIDTaGr 233 (336)
T PRK14974 217 HAKARGID-VVLIDTAGR 233 (336)
T ss_pred HHHhCCCC-EEEEECCCc
Confidence 222 2333 888897754
No 298
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.19 E-value=0.18 Score=56.36 Aligned_cols=90 Identities=17% Similarity=0.181 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhc--CCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCccccchHHHHHHHHHHH
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQARED--KLFDLVVFSEVSQT-LDIKKIQQEIAEKLGLVLEEETGSRRASRLYERL 251 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l 251 (1079)
..++|.++|..|+||||.+..++...... .+=..+..+++... ....+-++..++.++.+................+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 35799999999999999999998776432 11234556665532 2233346667777777654333333333333333
Q ss_pred HcCCcEEEEEeCCCC
Q 044755 252 KKEEKILIILDNIWK 266 (1079)
Q Consensus 252 ~~~~~~LlvlDdv~~ 266 (1079)
.+.-+|++|....
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 2455788888743
No 299
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.18 E-value=0.22 Score=56.45 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=49.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCcccc----chHHHHHHHHH
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT-LDIKKIQQEIAEKLGLVLEEE----TGSRRASRLYE 249 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~l~~ 249 (1079)
...++.++|.+|+||||.|..++.....+..+ .++.|++... +...+-++..+.+.+.+.... ...+......+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 35799999999999999999988775422222 3444544322 223344555566666543321 12222233333
Q ss_pred HHHcCCcE-EEEEeCCC
Q 044755 250 RLKKEEKI-LIILDNIW 265 (1079)
Q Consensus 250 ~l~~~~~~-LlvlDdv~ 265 (1079)
.... +.| +||+|-.-
T Consensus 177 ~~~~-~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKE-NGFDVVIVDTAG 192 (428)
T ss_pred HHHh-cCCCEEEEeCCC
Confidence 3332 334 67777654
No 300
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.17 E-value=0.23 Score=54.56 Aligned_cols=100 Identities=22% Similarity=0.271 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCC----CceEEEEEcCCCCcHH-HHHHHHHHHhhhcCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCc
Q 044755 162 CALKSVQNALTDV----NVSIVGVYGMGGIGKT-TLVKEVARQAREDKLFDLVVFSEVSQT-LDIKKIQQEIAEKLGLVL 235 (1079)
Q Consensus 162 ~~~~~l~~~l~~~----~~~vi~I~G~gGiGKT-tLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~ 235 (1079)
+....+..++.++ +-+||.+||+.||||| |||+..+.-....+ =..+..|+.... ....+-++.-++-++.+.
T Consensus 185 ~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~ 263 (407)
T COG1419 185 EKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIGAVEQLKTYADIMGVPL 263 (407)
T ss_pred HHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhhHHHHHHHHHHHhCCce
Confidence 3344455555544 4789999999999997 55555554441112 244666766542 345555666777778777
Q ss_pred cccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 044755 236 EEETGSRRASRLYERLKKEEKILIILDNI 264 (1079)
Q Consensus 236 ~~~~~~~~~~~l~~~l~~~~~~LlvlDdv 264 (1079)
....+..........+. +. =+|.+|-+
T Consensus 264 ~vv~~~~el~~ai~~l~-~~-d~ILVDTa 290 (407)
T COG1419 264 EVVYSPKELAEAIEALR-DC-DVILVDTA 290 (407)
T ss_pred EEecCHHHHHHHHHHhh-cC-CEEEEeCC
Confidence 65554444444445554 22 34555654
No 301
>PRK04296 thymidine kinase; Provisional
Probab=95.15 E-value=0.024 Score=57.05 Aligned_cols=110 Identities=16% Similarity=0.161 Sum_probs=60.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccc---cchHHHHHHHHHHHHc
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEE---ETGSRRASRLYERLKK 253 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 253 (1079)
.++.|+|..|.||||+|...+.+.... -..++.+. ..++.......++.+++..... ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 477899999999999999998877532 22333332 1112222234456666643322 111222222222 22
Q ss_pred CCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEEEecChh
Q 044755 254 EEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLTARDRN 294 (1079)
Q Consensus 254 ~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~ 294 (1079)
++.-+||+|.+.-. ++...+...+ ...|..|++|.+..+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 34458999998543 2122222211 235788999999854
No 302
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.13 E-value=0.078 Score=60.45 Aligned_cols=86 Identities=19% Similarity=0.231 Sum_probs=49.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTL-DIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEE 255 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1079)
+++.++|++|+||||++..++........-..+..|+..... ...+-++..++.++.+................+. .
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~--~ 299 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR--D 299 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--C
Confidence 699999999999999999887765411222456677664421 1223344445556655433222222233333332 3
Q ss_pred cEEEEEeCC
Q 044755 256 KILIILDNI 264 (1079)
Q Consensus 256 ~~LlvlDdv 264 (1079)
.=+|++|..
T Consensus 300 ~DlVlIDt~ 308 (424)
T PRK05703 300 CDVILIDTA 308 (424)
T ss_pred CCEEEEeCC
Confidence 457888865
No 303
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.12 E-value=0.11 Score=55.17 Aligned_cols=126 Identities=21% Similarity=0.149 Sum_probs=69.8
Q ss_pred HHHHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCC-Ccc------
Q 044755 165 KSVQNALT-DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGL-VLE------ 236 (1079)
Q Consensus 165 ~~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~------ 236 (1079)
+.++..+. +.+..-++|+|..|.|||||.+.+...... ....+++.-..-. ..+-..+++..... +..
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~-~~d~~~ei~~~~~~~~q~~~~~r~ 174 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKVG-IVDERSEIAGCVNGVPQHDVGIRT 174 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEee-cchhHHHHHHHhcccccccccccc
Confidence 34444444 344578999999999999999999977642 2334443211111 00111233322211 111
Q ss_pred -ccchHHHHHHHHHHHHcCCcEEEEEeCCCCccccccccCCCCCCCCCcEEEEEecChhhhh
Q 044755 237 -EETGSRRASRLYERLKKEEKILIILDNIWKCVDLEAVGIPFGDDHKGCKLLLTARDRNVLF 297 (1079)
Q Consensus 237 -~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 297 (1079)
..........+...+....+=++++|.+...+.+..+...+ ..|..||+||....+..
T Consensus 175 ~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 175 DVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred cccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 00111123334444443578899999998766666554443 24778999999776643
No 304
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.12 E-value=0.073 Score=59.37 Aligned_cols=86 Identities=23% Similarity=0.318 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCcccc--chHHHHHHHHHHHHc
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEE--TGSRRASRLYERLKK 253 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 253 (1079)
-.++.|.|.+|+|||||+.+++...... -..++|++.... ..++ ..-+.+++...+.. ........+.+.+.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4699999999999999999998876532 246788877543 3333 23345555433211 011223445555554
Q ss_pred CCcEEEEEeCCCC
Q 044755 254 EEKILIILDNIWK 266 (1079)
Q Consensus 254 ~~~~LlvlDdv~~ 266 (1079)
.+.-+||+|.+..
T Consensus 157 ~~~~lVVIDSIq~ 169 (372)
T cd01121 157 LKPDLVIIDSIQT 169 (372)
T ss_pred cCCcEEEEcchHH
Confidence 5677888888744
No 305
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.08 E-value=0.11 Score=54.41 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=59.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhh--cCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCcc-------ccchHH---
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQARE--DKLFDLVVFSEVSQTL-DIKKIQQEIAEKLGLVLE-------EETGSR--- 242 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-------~~~~~~--- 242 (1079)
-..++|.|..|+|||+|+.++.++... +.+-+.++++-+++.. ...++.+++...-..... ++....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 357899999999999999999887541 2235788999887654 466666666554222110 111111
Q ss_pred ---HHHHHHHHHHc--CCcEEEEEeCCCCc
Q 044755 243 ---RASRLYERLKK--EEKILIILDNIWKC 267 (1079)
Q Consensus 243 ---~~~~l~~~l~~--~~~~LlvlDdv~~~ 267 (1079)
....+.+++.. ++++|+++||+-..
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 13344555542 69999999998653
No 306
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.07 E-value=0.0099 Score=60.30 Aligned_cols=83 Identities=22% Similarity=0.294 Sum_probs=54.3
Q ss_pred hccCCcceEEEecCc--ccc-ccCccccccccccEEeccccccCCc---ccccCCcccceeeccCCcCcccC--h--hhc
Q 044755 550 FTGMRKLRVVDFTRM--QLL-LLPSSIDLLVNLQTLCLVECMLDDI---AIIGKLKNLEILSFWGSVIVMLP--E--ELG 619 (1079)
Q Consensus 550 ~~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~l~~~---~~i~~L~~L~~L~l~~~~l~~lp--~--~i~ 619 (1079)
|..+++|+.|+++.| .+. .++-....+++|++|++++|+++.+ ..+.++.+|..||+..|....+- . .+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 456677777777777 333 3444445568888888888876653 44556777888888888555442 1 245
Q ss_pred cCCcccEEccccc
Q 044755 620 HLTKLRQLDLSNC 632 (1079)
Q Consensus 620 ~L~~L~~L~l~~~ 632 (1079)
-+++|.+|+-...
T Consensus 141 ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 141 LLPSLKYLDGCDV 153 (260)
T ss_pred Hhhhhcccccccc
Confidence 5688888876554
No 307
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.06 E-value=0.12 Score=55.17 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
....+|+|.|..|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999988766553
No 308
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.03 E-value=0.027 Score=64.42 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=40.3
Q ss_pred ccccHHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 156 AFESRLCALKSVQNALT------DVNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
+++|.++.++++++.|. +..-+++.++|++|+||||||+.+.+-.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 57799999999999983 45668999999999999999999998764
No 309
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.02 E-value=0.15 Score=53.54 Aligned_cols=53 Identities=11% Similarity=0.285 Sum_probs=37.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLG 232 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (1079)
.-+++.|.|.+|+|||++|.++...... .-..++||+... +..++.+.+ .+++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~--~ge~~lyvs~ee--~~~~i~~~~-~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ--MGEPGIYVALEE--HPVQVRRNM-AQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEEEeeC--CHHHHHHHH-HHhC
Confidence 3579999999999999999997665431 235688888765 555666553 3444
No 310
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.99 E-value=0.15 Score=56.08 Aligned_cols=57 Identities=28% Similarity=0.405 Sum_probs=42.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDK----LFDLVVFSEVSQTLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1079)
.+++-|+|.+|+|||+++.+++....... .=..++||+....++.+.+. ++++.++.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 57899999999999999999987654211 11379999999988887755 44555554
No 311
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.98 E-value=0.11 Score=56.86 Aligned_cols=58 Identities=24% Similarity=0.294 Sum_probs=41.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDK----LFDLVVFSEVSQTLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1079)
...++.|+|.+|+|||||+..++....... .-..++|++....++...+ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 357999999999999999998876432111 1236799999888887764 445565554
No 312
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.94 E-value=0.014 Score=35.07 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=15.7
Q ss_pred cceEEEecCccccccCccccc
Q 044755 555 KLRVVDFTRMQLLLLPSSIDL 575 (1079)
Q Consensus 555 ~Lr~L~L~~~~i~~lp~~i~~ 575 (1079)
+|++||+++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 477888888888888777654
No 313
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.94 E-value=0.11 Score=57.05 Aligned_cols=58 Identities=24% Similarity=0.303 Sum_probs=42.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCEEEEEEeCCccCHHHHHHHHHHHhCCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDK----LFDLVVFSEVSQTLDIKKIQQEIAEKLGLV 234 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1079)
..++-|+|.+|+|||+|+..++-...... .-..++||+....++++.+. +|++.++..
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 56888999999999999998875433111 11369999999999888764 556666543
No 314
>PRK07667 uridine kinase; Provisional
Probab=94.94 E-value=0.04 Score=55.75 Aligned_cols=38 Identities=26% Similarity=0.422 Sum_probs=30.0
Q ss_pred HHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 164 LKSVQNALT--DVNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 164 ~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.+.+++.+. +.+..+|+|.|.+|.||||+|+.+.....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555555 34457999999999999999999998875
No 315
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.92 E-value=0.17 Score=53.38 Aligned_cols=90 Identities=21% Similarity=0.297 Sum_probs=56.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCC-CccccchHHHHHHHHHHHHc
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGL-VLEEETGSRRASRLYERLKK 253 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~l~~~l~~ 253 (1079)
.-+++=|+|+.|.||||+|.+++-.... .-..++|++....+++..+..-....+.. -.......+....+.+.+.+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~--~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQK--PGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhc--CCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 3578999999999999999998776652 34489999999999988765433331211 11112222333333333332
Q ss_pred ---CCcEEEEEeCCCC
Q 044755 254 ---EEKILIILDNIWK 266 (1079)
Q Consensus 254 ---~~~~LlvlDdv~~ 266 (1079)
.+--|+|+|.+-.
T Consensus 137 ~~~~~i~LvVVDSvaa 152 (279)
T COG0468 137 SGAEKIDLLVVDSVAA 152 (279)
T ss_pred hccCCCCEEEEecCcc
Confidence 1356888888744
No 316
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.90 E-value=0.12 Score=53.22 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
+|+|.|..|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 317
>PRK06547 hypothetical protein; Provisional
Probab=94.88 E-value=0.042 Score=54.11 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=27.9
Q ss_pred HHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 168 QNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 168 ~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
...+......+|.|.|..|+||||+|+.+.+...
T Consensus 7 ~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 7 AARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344566788999999999999999999988753
No 318
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.86 E-value=0.022 Score=56.11 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..+|+|-||-|+||||||++++++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999886
No 319
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.37 Score=51.76 Aligned_cols=27 Identities=37% Similarity=0.496 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..+-|-.+|++|.|||-||++++++..
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeag 152 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAG 152 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcC
Confidence 356788999999999999999999875
No 320
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.7 Score=53.74 Aligned_cols=149 Identities=17% Similarity=0.278 Sum_probs=85.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCc
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEK 256 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1079)
.-|.++|++|.|||.||.+++..... -||+|..+ +++.+- +| ..++.+..++.+.+.-++
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~-------~fisvKGP----ElL~Ky---IG------aSEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNL-------RFISVKGP----ELLSKY---IG------ASEQNVRDLFERAQSAKP 761 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCe-------eEEEecCH----HHHHHH---hc------ccHHHHHHHHHHhhccCC
Confidence 46789999999999999999887642 35667654 222222 22 123445667777776799
Q ss_pred EEEEEeCCCCcc-------------ccccccCCCC--CCCCCcEEEE-EecChhhhhh-cC---CCceEeCCCCCHHHHH
Q 044755 257 ILIILDNIWKCV-------------DLEAVGIPFG--DDHKGCKLLL-TARDRNVLFR-MG---SQKNFSIDILNEEEAW 316 (1079)
Q Consensus 257 ~LlvlDdv~~~~-------------~~~~l~~~l~--~~~~gs~iiv-TtR~~~v~~~-~~---~~~~~~l~~L~~~~~~ 316 (1079)
|++++|..++.. ....+...+. .+-.|.-|+- |||.+-+-.. .. -++.+.=+.-++.+-.
T Consensus 762 CiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl 841 (952)
T KOG0735|consen 762 CILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERL 841 (952)
T ss_pred eEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHH
Confidence 999999988741 1222322222 2334655555 5554433222 22 2334444555667777
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 317 RLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 317 ~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
++|+.......... ....+.++.+..|.-
T Consensus 842 ~il~~ls~s~~~~~--~vdl~~~a~~T~g~t 870 (952)
T KOG0735|consen 842 EILQVLSNSLLKDT--DVDLECLAQKTDGFT 870 (952)
T ss_pred HHHHHHhhccCCcc--ccchHHHhhhcCCCc
Confidence 77777663211111 112455777777754
No 321
>PTZ00035 Rad51 protein; Provisional
Probab=94.80 E-value=0.18 Score=55.62 Aligned_cols=58 Identities=26% Similarity=0.328 Sum_probs=41.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhc----CCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQARED----KLFDLVVFSEVSQTLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1079)
.-.++.|+|..|+|||||+..++-..... ..=..++||+....++.+.+ .+++++++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 35799999999999999999887554310 11235779998887777774 445666554
No 322
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.055 Score=56.39 Aligned_cols=28 Identities=29% Similarity=0.371 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQARED 203 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (1079)
-++|.++|++|+|||+|.++.+++..++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4789999999999999999999997653
No 323
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.74 E-value=0.075 Score=54.84 Aligned_cols=119 Identities=18% Similarity=0.296 Sum_probs=66.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhc-----------CCC---CEEEEEEeCCcc------CH----------------
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQARED-----------KLF---DLVVFSEVSQTL------DI---------------- 220 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-----------~~F---~~~~wv~~~~~~------~~---------------- 220 (1079)
..++|+|+.|.|||||.+.+.--.+.. ..+ ..+.||+=...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 799999999999999999998633210 001 235555321111 11
Q ss_pred ------HHHHHHHHHHhCCCc------cccchHHH-HHHHHHHHHcCCcEEEEEeCCCCc------cccccccCCCCCCC
Q 044755 221 ------KKIQQEIAEKLGLVL------EEETGSRR-ASRLYERLKKEEKILIILDNIWKC------VDLEAVGIPFGDDH 281 (1079)
Q Consensus 221 ------~~~~~~i~~~l~~~~------~~~~~~~~-~~~l~~~l~~~~~~LlvlDdv~~~------~~~~~l~~~l~~~~ 281 (1079)
.+...+.++.+++.. .+-+..+. ...+.+.|. .++=|++||.--.- ...-++...+..
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~-~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~-- 187 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALA-QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-- 187 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhc-cCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--
Confidence 244555566665432 12222233 333444444 58889999964332 222233333322
Q ss_pred CCcEEEEEecChhhhhh
Q 044755 282 KGCKLLLTARDRNVLFR 298 (1079)
Q Consensus 282 ~gs~iivTtR~~~v~~~ 298 (1079)
.|..|+++|.+-.....
T Consensus 188 eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 188 EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred CCCEEEEEeCCcHHhHh
Confidence 38899999998765443
No 324
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.73 E-value=0.18 Score=55.52 Aligned_cols=58 Identities=31% Similarity=0.419 Sum_probs=42.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKL----FDLVVFSEVSQTLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1079)
...++-|+|.+|+|||+++.+++-....... =..++||+....++...+.+ +++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 3578999999999999999999866432111 14799999999888777654 4455543
No 325
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.72 E-value=0.21 Score=56.29 Aligned_cols=87 Identities=17% Similarity=0.234 Sum_probs=49.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKE 254 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1079)
..+++++|..|+||||++..++.........+.+.+++... .....+-+...++.++.+................+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~-- 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR-- 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc--
Confidence 46999999999999999998877543222234455554433 223334455566666765543333322333333332
Q ss_pred CcEEEEEeCC
Q 044755 255 EKILIILDNI 264 (1079)
Q Consensus 255 ~~~LlvlDdv 264 (1079)
..-++++|-.
T Consensus 269 ~~d~VLIDTa 278 (420)
T PRK14721 269 GKHMVLIDTV 278 (420)
T ss_pred CCCEEEecCC
Confidence 2345566654
No 326
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.71 E-value=0.18 Score=65.49 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQARE 202 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (1079)
.+-|.++|++|+|||.||++++.+..+
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 567889999999999999999998753
No 327
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.69 E-value=0.22 Score=53.22 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=42.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1079)
+.-+++.|+|.+|+|||++|.++...... ....++||+.... ..++.+.+.+ ++.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~--~ge~vlyvs~~e~--~~~l~~~~~~-~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAR--EGEPVLYVSTEES--PEELLENARS-FGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHh--cCCcEEEEEecCC--HHHHHHHHHH-cCC
Confidence 34689999999999999999999888763 3788999998874 4555555443 443
No 328
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.69 E-value=0.15 Score=52.93 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=32.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLD 219 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 219 (1079)
.-.++.|.|.+|+||||+|.+++...... -..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 35799999999999999999998776422 34578887765543
No 329
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.68 E-value=0.077 Score=50.48 Aligned_cols=75 Identities=23% Similarity=0.230 Sum_probs=46.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEE
Q 044755 179 VGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKIL 258 (1079)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~L 258 (1079)
|.++|.+|+|||+||+.+++... ....-+.++...+..+++...--.-+.....+.. +.+.+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~------l~~a~--~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGP------LVRAM--RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-C------CCTTH--HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceeeeeeccccccccccc------ccccc--cceeE
Confidence 67899999999999999998873 2355678888888887775432221110000000 00011 17899
Q ss_pred EEEeCCCC
Q 044755 259 IILDNIWK 266 (1079)
Q Consensus 259 lvlDdv~~ 266 (1079)
+|||++..
T Consensus 69 l~lDEin~ 76 (139)
T PF07728_consen 69 LVLDEINR 76 (139)
T ss_dssp EEESSCGG
T ss_pred EEECCccc
Confidence 99999984
No 330
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.66 E-value=0.25 Score=53.38 Aligned_cols=85 Identities=28% Similarity=0.393 Sum_probs=51.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccc-----cchHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEE-----ETGSRRASRLYER 250 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 250 (1079)
-+++-|+|..|+||||||..+....... -..++||+....++. ..+.++|++.+. ....+.+-.+.+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 4699999999999999999998876533 456899999887665 344555654331 1222333334444
Q ss_pred H-HcCCcEEEEEeCCCCc
Q 044755 251 L-KKEEKILIILDNIWKC 267 (1079)
Q Consensus 251 l-~~~~~~LlvlDdv~~~ 267 (1079)
+ +.+..-++|+|-|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 4 4455568999998764
No 331
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.60 E-value=0.1 Score=52.02 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
-.+++|+|..|.|||||++.++-...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 36899999999999999999987643
No 332
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.60 E-value=0.03 Score=52.41 Aligned_cols=22 Identities=45% Similarity=0.797 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 044755 179 VGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
|.|.|..|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998874
No 333
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.57 E-value=0.037 Score=53.83 Aligned_cols=26 Identities=38% Similarity=0.626 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQARE 202 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (1079)
+.|-+.|.+|+||||+|+++++..+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH
Confidence 46778999999999999999988764
No 334
>PRK05439 pantothenate kinase; Provisional
Probab=94.56 E-value=0.25 Score=53.29 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=43.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHH--HHHHhCCCccccchHHHHHHHHHHH
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQE--IAEKLGLVLEEETGSRRASRLYERL 251 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~--i~~~l~~~~~~~~~~~~~~~l~~~l 251 (1079)
...-+|+|.|.+|+||||+|+.+.........-..+.-++...-....+.+.. +...-+ .++.-+.+........+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg--~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKG--FPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCC--CcccccHHHHHHHHHHH
Confidence 45679999999999999999999876542111122334444433323322221 111111 22233444555666666
Q ss_pred HcCCc
Q 044755 252 KKEEK 256 (1079)
Q Consensus 252 ~~~~~ 256 (1079)
+.++.
T Consensus 162 k~G~~ 166 (311)
T PRK05439 162 KSGKP 166 (311)
T ss_pred HcCCC
Confidence 66554
No 335
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.54 E-value=0.033 Score=45.29 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
+|.|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 336
>PRK04328 hypothetical protein; Provisional
Probab=94.53 E-value=0.17 Score=53.39 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=37.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1079)
.-+++.|.|.+|+|||+||.++......+ -..++|++.... ..++. ..+++++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~--~~~i~-~~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH--PVQVR-RNMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC--HHHHH-HHHHHcCC
Confidence 35799999999999999999977664322 356788888763 44443 34455554
No 337
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.17 Score=51.11 Aligned_cols=95 Identities=22% Similarity=0.315 Sum_probs=57.5
Q ss_pred CccccccHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccC
Q 044755 153 GYEAFESRLCALKSVQNALT-------------DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLD 219 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 219 (1079)
.+.++.|-.+.++++.+... =+..+-|..+|++|.|||-+|++|++.-. . .|+.|-..
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd--a-----cfirvigs-- 245 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD--A-----CFIRVIGS-- 245 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC--c-----eEEeehhH--
Confidence 44556677777777766543 13456788999999999999999998653 1 12222111
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 044755 220 IKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC 267 (1079)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 267 (1079)
++.++-. | .....+..+++-.+..|-++|++|.++..
T Consensus 246 --elvqkyv---g------egarmvrelf~martkkaciiffdeidai 282 (435)
T KOG0729|consen 246 --ELVQKYV---G------EGARMVRELFEMARTKKACIIFFDEIDAI 282 (435)
T ss_pred --HHHHHHh---h------hhHHHHHHHHHHhcccceEEEEeeccccc
Confidence 1111111 1 11223444555555568899999988753
No 338
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.50 E-value=0.15 Score=57.92 Aligned_cols=90 Identities=24% Similarity=0.357 Sum_probs=59.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCc-------cccchH------
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTL-DIKKIQQEIAEKLGLVL-------EEETGS------ 241 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~------ 241 (1079)
-..++|+|.+|+|||||+.++.+..... +-+.++++-+++.. .+.++.+++...-.... .+++..
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 4589999999999999999998877633 56888888887553 45666666654322111 011111
Q ss_pred HHHHHHHHHHH-c-CCcEEEEEeCCCC
Q 044755 242 RRASRLYERLK-K-EEKILIILDNIWK 266 (1079)
Q Consensus 242 ~~~~~l~~~l~-~-~~~~LlvlDdv~~ 266 (1079)
..+..+.+++. + ++++|+++||+-.
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchH
Confidence 12344555554 2 7999999999954
No 339
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.48 E-value=0.24 Score=52.88 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=37.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT-LDIKKIQQEIAEKLGLV 234 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~ 234 (1079)
+.+++.++|++|+||||.+..++...... . ..+.+++.... ....+-+...++..+.+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~-g-~~V~li~~D~~r~~a~~ql~~~~~~~~i~ 129 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ-G-KSVLLAAGDTFRAAAIEQLEEWAKRLGVD 129 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-C-CEEEEEeCCCCCHHHHHHHHHHHHhCCeE
Confidence 45799999999999999999998776532 2 35666665431 11223344455665543
No 340
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.45 E-value=0.34 Score=43.98 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=31.7
Q ss_pred cccHHHHHHHHHHHhc----C---CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 157 FESRLCALKSVQNALT----D---VNVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 157 ~~gr~~~~~~l~~~l~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
++|..-..+.+++++. + .+.-|++.+|..|+|||.+++.+++..
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3455555555555543 2 345699999999999999999998874
No 341
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.44 E-value=0.54 Score=54.97 Aligned_cols=130 Identities=22% Similarity=0.311 Sum_probs=70.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhc-C-----CCCEEEEEEeCC-c--------------c-C-HHHHHHHHHHHhC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQARED-K-----LFDLVVFSEVSQ-T--------------L-D-IKKIQQEIAEKLG 232 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~-----~F~~~~wv~~~~-~--------------~-~-~~~~~~~i~~~l~ 232 (1079)
-..|+|+|+.|+|||||.+.+....... . .--.+.|+.-.. . + + ...-.+..+.+++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 4589999999999999999997654321 0 001122222111 0 0 1 1334444555555
Q ss_pred CCccc-------cchHHHHHHHHHHHHcCCcEEEEEeCCCCccccc---cccCCCCCCCCCcEEEEEecChhhhhhcCCC
Q 044755 233 LVLEE-------ETGSRRASRLYERLKKEEKILIILDNIWKCVDLE---AVGIPFGDDHKGCKLLLTARDRNVLFRMGSQ 302 (1079)
Q Consensus 233 ~~~~~-------~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~---~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~ 302 (1079)
...+. -+..+.....+..+.-..+-++|||.=-+.-+.+ .+...+. ...| .||+.|.++....... .
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~-~f~G-tvl~VSHDr~Fl~~va-~ 504 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALL-DFEG-TVLLVSHDRYFLDRVA-T 504 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHH-hCCC-eEEEEeCCHHHHHhhc-c
Confidence 43321 2333444555555555688999999765543222 2222221 2235 4999999997776543 3
Q ss_pred ceEeCC
Q 044755 303 KNFSID 308 (1079)
Q Consensus 303 ~~~~l~ 308 (1079)
+.+.+.
T Consensus 505 ~i~~~~ 510 (530)
T COG0488 505 RIWLVE 510 (530)
T ss_pred eEEEEc
Confidence 344444
No 342
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.42 E-value=0.017 Score=58.34 Aligned_cols=219 Identities=17% Similarity=0.102 Sum_probs=113.8
Q ss_pred ccCCcceEEEecCcccc----cc-------CccccccccccEEeccccccCC--c----ccccCCcccceeeccCCcCcc
Q 044755 551 TGMRKLRVVDFTRMQLL----LL-------PSSIDLLVNLQTLCLVECMLDD--I----AIIGKLKNLEILSFWGSVIVM 613 (1079)
Q Consensus 551 ~~l~~Lr~L~L~~~~i~----~l-------p~~i~~L~~L~~L~L~~~~l~~--~----~~i~~L~~L~~L~l~~~~l~~ 613 (1079)
.+-++|++.+++.-... .+ ...+-+|++|+..+|+.|.+.. | .-|.+-..|.+|.+++|.+..
T Consensus 55 a~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 55 ANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred hhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 44556666666543211 12 2334566777777777776533 3 345566777777777775543
Q ss_pred cCh--------------hhccCCcccEEcccccccccccChhh----hhcccccceeecccccccccCCCCCchhhhcch
Q 044755 614 LPE--------------ELGHLTKLRQLDLSNCFKLKVIAPNV----ISRLVRLEELYMSNCFVEWDDEGPNSERINARL 675 (1079)
Q Consensus 614 lp~--------------~i~~L~~L~~L~l~~~~~l~~~~~~~----l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 675 (1079)
+.. -..+-+.|+......| ++...|... +..-.+|+++.+..|.+.... -..-..
T Consensus 135 ~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpeg------v~~L~~ 207 (388)
T COG5238 135 IAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAALLESHENLKEVKIQQNGIRPEG------VTMLAF 207 (388)
T ss_pred cchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHHHHhhcCceeEEeeecCcCcch------hHHHHH
Confidence 211 1224466777777665 566555432 112246777777777654110 001123
Q ss_pred hhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccc----cccccccccccccCCCceeec
Q 044755 676 DELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQD----VKNVLFDLDREGFSRLKHLHV 751 (1079)
Q Consensus 676 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~----~~~~~~~l~~~~~~~L~~L~l 751 (1079)
..+.-+.+|+.|++..|..+...+.....-+ ..++.|..|.+..|-. .+.+...+....+|+|..|..
T Consensus 208 ~gl~y~~~LevLDlqDNtft~~gS~~La~al--------~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~ 279 (388)
T COG5238 208 LGLFYSHSLEVLDLQDNTFTLEGSRYLADAL--------CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPG 279 (388)
T ss_pred HHHHHhCcceeeeccccchhhhhHHHHHHHh--------cccchhhhccccchhhccccHHHHHHHhhhhcCCCcccccc
Confidence 4455667888888887654433222111111 1234567777766642 233333333345688888888
Q ss_pred cCCCCcceecccCCc-CCCCCCCCccceeecccc
Q 044755 752 QNNPDFMCIVDSKER-VPLDDAFPILESLNLYNL 784 (1079)
Q Consensus 752 ~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~ 784 (1079)
.++.....++...+. ......+|-|..|.+.++
T Consensus 280 ~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 280 DYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred chhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 766322211111111 012256677777777653
No 343
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.40 E-value=0.19 Score=50.72 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=31.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHH
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQE 226 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 226 (1079)
++.|.|.+|+|||++|.++....... =..++|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 36789999999999999987765422 14577887765 34555443
No 344
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.39 E-value=0.038 Score=56.06 Aligned_cols=25 Identities=44% Similarity=0.675 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQARE 202 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (1079)
||+|.|.+|+||||+|+.+......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 7999999999999999999998863
No 345
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.38 E-value=0.12 Score=57.95 Aligned_cols=88 Identities=19% Similarity=0.358 Sum_probs=55.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCc-------cccchHH-----
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTL-DIKKIQQEIAEKLGLVL-------EEETGSR----- 242 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~----- 242 (1079)
-..++|+|..|+|||||++.+..... .+.++++-+++.. .+.++.++++..-+... .+++...
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 46899999999999999999986432 3666777776553 34556666544422211 0111111
Q ss_pred -HHHHHHHHHH-cCCcEEEEEeCCCCc
Q 044755 243 -RASRLYERLK-KEEKILIILDNIWKC 267 (1079)
Q Consensus 243 -~~~~l~~~l~-~~~~~LlvlDdv~~~ 267 (1079)
.+..+.+++. +++++|+++||+-..
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1233444443 489999999998553
No 346
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.36 E-value=0.16 Score=57.20 Aligned_cols=91 Identities=19% Similarity=0.270 Sum_probs=60.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcC--CCC---------EEEEEEeCCccCHHHHHHHHHHHhC-CCcc-------
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDK--LFD---------LVVFSEVSQTLDIKKIQQEIAEKLG-LVLE------- 236 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~------- 236 (1079)
-.-++|.|..|+|||||+.++.+.....+ ..| .++++-+++.....+.+.+.+..-+ ....
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 45789999999999999999988764100 012 6788888887777776666666655 2111
Q ss_pred ccchHH------HHHHHHHHHH--cCCcEEEEEeCCCC
Q 044755 237 EETGSR------RASRLYERLK--KEEKILIILDNIWK 266 (1079)
Q Consensus 237 ~~~~~~------~~~~l~~~l~--~~~~~LlvlDdv~~ 266 (1079)
+++... .+..+.+++. +++++|+++||+-.
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 111111 2344556666 47999999999854
No 347
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.36 E-value=0.16 Score=57.33 Aligned_cols=91 Identities=21% Similarity=0.377 Sum_probs=59.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCc-------cccchH------
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTL-DIKKIQQEIAEKLGLVL-------EEETGS------ 241 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~------ 241 (1079)
-.-++|.|.+|+|||+|+.++.+.... .+-+.++|+-+++.. .+.++.+++...-.... .+++..
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 457899999999999999999877542 334788898887654 45666666654322111 011111
Q ss_pred HHHHHHHHHHH--cCCcEEEEEeCCCCc
Q 044755 242 RRASRLYERLK--KEEKILIILDNIWKC 267 (1079)
Q Consensus 242 ~~~~~l~~~l~--~~~~~LlvlDdv~~~ 267 (1079)
..+..+.+++. +++++|+++||+-..
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 12344556665 379999999998653
No 348
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.34 E-value=0.2 Score=48.61 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
..++.|.|+.|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3688999999999999999999875
No 349
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.33 E-value=0.28 Score=55.62 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=55.9
Q ss_pred ceEEEEEcCCCCcHHHHH-HHHHHHhhh-----cCCCCEEEEEEeCCccCHHHHHHHHHHHhC-CCcc-------ccchH
Q 044755 176 VSIVGVYGMGGIGKTTLV-KEVARQARE-----DKLFDLVVFSEVSQTLDIKKIQQEIAEKLG-LVLE-------EETGS 241 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~-------~~~~~ 241 (1079)
-..++|.|..|+|||+|| ..+.++... .++-+.++++-+++..+.-.-+.+.+++-+ .... +++..
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 457899999999999997 666766532 123467889999877543333444444444 1110 11111
Q ss_pred H------HHHHHHHHHH-cCCcEEEEEeCCCCc
Q 044755 242 R------RASRLYERLK-KEEKILIILDNIWKC 267 (1079)
Q Consensus 242 ~------~~~~l~~~l~-~~~~~LlvlDdv~~~ 267 (1079)
. ....+-+++. +++.+|+|+||+-..
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1 1233344443 479999999998653
No 350
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.31 E-value=5.1 Score=44.53 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=41.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeC-CccCHHHHHHHHHHHhCCCcc
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVS-QTLDIKKIQQEIAEKLGLVLE 236 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~ 236 (1079)
.+.||-.+|.-|.||||-|..+++..+. +.+. +.-|++. ..+..-+-++.++.+.+.+.-
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~k-vllVaaD~~RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKK-VLLVAADTYRPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH-cCCc-eEEEecccCChHHHHHHHHHHHHcCCcee
Confidence 3679999999999999999999988874 2222 3333332 334455667778888776543
No 351
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.29 E-value=0.26 Score=51.67 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=37.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLG 232 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (1079)
.-+++.|+|.+|+|||++|.++......+ =..++|++.... ..++.+.+ .+++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCC
Confidence 35799999999999999999996654212 256889988754 45555553 3444
No 352
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.27 E-value=0.029 Score=59.79 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=50.0
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccc-cchHH
Q 044755 164 LKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEE-ETGSR 242 (1079)
Q Consensus 164 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~ 242 (1079)
...+++.+...+ +-+.++|+.|+|||++++.......... | ...-++.+...+...+++.+-..+...... -..
T Consensus 22 ~~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP-- 96 (272)
T PF12775_consen 22 YSYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYGP-- 96 (272)
T ss_dssp HHHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEEE--
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCC--
Confidence 344555555554 4558999999999999999886543221 1 244566666555544443222111110000 000
Q ss_pred HHHHHHHHHHcCCcEEEEEeCCCCc
Q 044755 243 RASRLYERLKKEEKILIILDNIWKC 267 (1079)
Q Consensus 243 ~~~~l~~~l~~~~~~LlvlDdv~~~ 267 (1079)
..+|+.++++||+.-.
T Consensus 97 ---------~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 97 ---------PGGKKLVLFIDDLNMP 112 (272)
T ss_dssp ---------ESSSEEEEEEETTT-S
T ss_pred ---------CCCcEEEEEecccCCC
Confidence 1268999999998653
No 353
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.27 E-value=0.082 Score=52.25 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.|.|.|.+|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999854
No 354
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.27 E-value=0.19 Score=57.01 Aligned_cols=90 Identities=22% Similarity=0.387 Sum_probs=58.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCc-------cccchH------
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT-LDIKKIQQEIAEKLGLVL-------EEETGS------ 241 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~------ 241 (1079)
-..++|.|..|+|||||+.++........ =+.++++-+++. ..+.++.+++...-.... .+.+..
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 45889999999999999999887765332 256788878654 345666766665422211 011111
Q ss_pred HHHHHHHHHHH--cCCcEEEEEeCCCC
Q 044755 242 RRASRLYERLK--KEEKILIILDNIWK 266 (1079)
Q Consensus 242 ~~~~~l~~~l~--~~~~~LlvlDdv~~ 266 (1079)
..+..+.+++. +++++|+++||+-.
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHH
Confidence 12334455553 48999999999855
No 355
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.26 E-value=0.25 Score=51.97 Aligned_cols=140 Identities=19% Similarity=0.192 Sum_probs=71.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCC----------CCEEEEEEeCCccC-HHHHHHHHHHHhCCCc-----------
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAREDKL----------FDLVVFSEVSQTLD-IKKIQQEIAEKLGLVL----------- 235 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~----------- 235 (1079)
+..|+|++|+|||+||..++-....... =..+++++.....+ +..=+..+...++...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 5678999999999999999876542211 12366666655432 2333333444332100
Q ss_pred -c-----c---cchHHHHHHHHHHHHcCCcEEEEEeCCCC--------ccccccccCCCCC--CCCCcEEEEEecChhhh
Q 044755 236 -E-----E---ETGSRRASRLYERLKKEEKILIILDNIWK--------CVDLEAVGIPFGD--DHKGCKLLLTARDRNVL 296 (1079)
Q Consensus 236 -~-----~---~~~~~~~~~l~~~l~~~~~~LlvlDdv~~--------~~~~~~l~~~l~~--~~~gs~iivTtR~~~v~ 296 (1079)
. . .........+.+.+...+.-+||+|-+-. ......+...+.. ...|+.||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 0 01122344455555444677999996532 1112222111111 23477888888755322
Q ss_pred hh--------c-------CCCceEeCCCCCHHHHHH
Q 044755 297 FR--------M-------GSQKNFSIDILNEEEAWR 317 (1079)
Q Consensus 297 ~~--------~-------~~~~~~~l~~L~~~~~~~ 317 (1079)
.. . .....+.+...+++++.+
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 10 0 112356666777666655
No 356
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.25 E-value=0.042 Score=52.56 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
||.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998765
No 357
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.23 E-value=0.019 Score=34.45 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=10.2
Q ss_pred cceeeccCCcCcccChhhc
Q 044755 601 LEILSFWGSVIVMLPEELG 619 (1079)
Q Consensus 601 L~~L~l~~~~l~~lp~~i~ 619 (1079)
|++||+++|.++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555555443
No 358
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.23 E-value=0.26 Score=47.39 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
||.|+|.+|.||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998764
No 359
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.22 E-value=0.16 Score=50.25 Aligned_cols=119 Identities=23% Similarity=0.238 Sum_probs=62.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhh---cC---CCC--EEEEEEeCCccCHHHHHHHHHHHhCCCcc--c-----cc-
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQARE---DK---LFD--LVVFSEVSQTLDIKKIQQEIAEKLGLVLE--E-----ET- 239 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~---~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~-----~~- 239 (1079)
-.+++|+|+.|.|||||.+.+..+... .. .|. .+.|+ .+ .+.+..++.... . .+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 469999999999999999988642110 00 010 12222 11 355666664321 1 11
Q ss_pred hHHHHHHHHHHHHcCC--cEEEEEeCCCCccc---cccccCCCCC-CCCCcEEEEEecChhhhhhcCCCceEeC
Q 044755 240 GSRRASRLYERLKKEE--KILIILDNIWKCVD---LEAVGIPFGD-DHKGCKLLLTARDRNVLFRMGSQKNFSI 307 (1079)
Q Consensus 240 ~~~~~~~l~~~l~~~~--~~LlvlDdv~~~~~---~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~~l 307 (1079)
...+...+...+. .+ +=++++|+--..-+ .+.+...+.. ...|..||++|.+.+.... .++.+.+
T Consensus 91 Gq~qrl~laral~-~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELF-SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHh-hCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 1222333444444 35 67888898755322 1122121111 1246679999998876542 4444444
No 360
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.20 E-value=0.057 Score=55.44 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQ 199 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~ 199 (1079)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998743
No 361
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.18 E-value=0.06 Score=54.08 Aligned_cols=125 Identities=20% Similarity=0.250 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc--cC----HHHH-------HHHH
Q 044755 161 LCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT--LD----IKKI-------QQEI 227 (1079)
Q Consensus 161 ~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~----~~~~-------~~~i 227 (1079)
..+-...+++|. +..++.+.|++|+|||.||.+.+-+.-.++.|+.++++.-.-. .+ +-++ +.-+
T Consensus 6 ~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~ 83 (205)
T PF02562_consen 6 NEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPI 83 (205)
T ss_dssp SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHH
T ss_pred CHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHH
Confidence 344455566666 4569999999999999999998877655578888887643211 00 1111 1111
Q ss_pred HHHhCCCccccchHHHHHHHHHH---------HHcC---CcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEEEecCh
Q 044755 228 AEKLGLVLEEETGSRRASRLYER---------LKKE---EKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLTARDR 293 (1079)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~---------l~~~---~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~ 293 (1079)
...+..-.. .+....+.+. ..+| ....||+|++.+. .++..+... .+.|||||++--..
T Consensus 84 ~d~l~~~~~----~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 84 YDALEELFG----KEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp HHHHTTTS-----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred HHHHHHHhC----hHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 111111110 0111111110 0023 4579999999875 456665444 45689999987654
Q ss_pred h
Q 044755 294 N 294 (1079)
Q Consensus 294 ~ 294 (1079)
.
T Consensus 157 Q 157 (205)
T PF02562_consen 157 Q 157 (205)
T ss_dssp -
T ss_pred e
Confidence 3
No 362
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.18 E-value=0.2 Score=49.23 Aligned_cols=124 Identities=11% Similarity=0.116 Sum_probs=61.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCC---CC---EEEEEEeCCccCHHHHHHHHHHHhCCCccc-cchHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKL---FD---LVVFSEVSQTLDIKKIQQEIAEKLGLVLEE-ETGSRRASRLY 248 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~---~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~ 248 (1079)
-.+++|+|..|.|||||++.+......... ++ .+.++.-........+.+.+.-. .... +..+.+.-.+.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~la 103 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAFA 103 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHHH
Confidence 468999999999999999999876432110 11 12222211111111233333210 1111 12223333444
Q ss_pred HHHHcCCcEEEEEeCCCCcccc---ccccCCCCCCCCCcEEEEEecChhhhhhcCCCceEeC
Q 044755 249 ERLKKEEKILIILDNIWKCVDL---EAVGIPFGDDHKGCKLLLTARDRNVLFRMGSQKNFSI 307 (1079)
Q Consensus 249 ~~l~~~~~~LlvlDdv~~~~~~---~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 307 (1079)
+.+. .++=++++|+--..-+. +.+...+..- +..||++|.+..... ..++.+.+
T Consensus 104 ral~-~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 104 RLLL-HKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHH-cCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 5555 47778899986553221 1111111111 356888888876543 23444444
No 363
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.18 E-value=0.13 Score=51.03 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
-.+++|+|..|.|||||.+.++....
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46999999999999999999987653
No 364
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.18 E-value=0.081 Score=53.73 Aligned_cols=110 Identities=11% Similarity=0.106 Sum_probs=56.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEE 255 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1079)
.+|.|+|+.|.||||++..+...... .....++.--.. ...... ...+..+-.. ..........+...+. ..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~--~~~~~i~t~e~~~E~~~~~-~~~~i~q~~v---g~~~~~~~~~i~~aLr-~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK--NKTHHILTIEDPIEFVHES-KRSLINQREV---GLDTLSFENALKAALR-QD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh--cCCcEEEEEcCCccccccC-ccceeeeccc---CCCccCHHHHHHHHhc-CC
Confidence 47899999999999999988776542 223333322211 110000 0011111000 0011122333444454 35
Q ss_pred cEEEEEeCCCCccccccccCCCCCCCCCcEEEEEecChhhh
Q 044755 256 KILIILDNIWKCVDLEAVGIPFGDDHKGCKLLLTARDRNVL 296 (1079)
Q Consensus 256 ~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 296 (1079)
+=++++|++.+.+........ ...|..|+.|+...++.
T Consensus 75 pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 75 PDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 669999999876554432222 22456688888766544
No 365
>PRK08233 hypothetical protein; Provisional
Probab=94.14 E-value=0.044 Score=55.05 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..+|+|.|.+|+||||+|+.++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 366
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.28 Score=57.20 Aligned_cols=172 Identities=20% Similarity=0.274 Sum_probs=91.8
Q ss_pred ccccccHHHH---HHHHHHHhcCCC---------ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHH
Q 044755 154 YEAFESRLCA---LKSVQNALTDVN---------VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIK 221 (1079)
Q Consensus 154 ~~~~~gr~~~---~~~l~~~l~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 221 (1079)
..+..|.|+. +.++++.|.++. ++=|..+|++|+|||.||++++-+..+. | .+.|.. +.
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS-~F- 219 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGS-DF- 219 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccch-hh-
Confidence 3445676655 455666666432 4678899999999999999999887653 2 111211 01
Q ss_pred HHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc------------ccc----cccCCCCC--CCCC
Q 044755 222 KIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV------------DLE----AVGIPFGD--DHKG 283 (1079)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~------------~~~----~l~~~l~~--~~~g 283 (1079)
-++.-. ....++..++..-++.-+++|++|.++... .++ .+..-... .+.|
T Consensus 220 ---VemfVG--------vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~g 288 (596)
T COG0465 220 ---VEMFVG--------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEG 288 (596)
T ss_pred ---hhhhcC--------CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCc
Confidence 111111 112344455555555678999999887642 122 12111111 1224
Q ss_pred cEEEEEecChhhhhh-----cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 284 CKLLLTARDRNVLFR-----MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 284 s~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
-.|+..|-..+|... -.-++.+.++.-+-..-.+.++-++....-.+.. + ...|++.+-|.-
T Consensus 289 viviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~V-d-l~~iAr~tpGfs 355 (596)
T COG0465 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDV-D-LKKIARGTPGFS 355 (596)
T ss_pred eEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcC-C-HHHHhhhCCCcc
Confidence 344444444445432 1234567777776666667777666322111111 1 223777777654
No 367
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.11 E-value=0.24 Score=58.02 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=39.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLV 234 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1079)
.-+++.|.|.+|+|||||+.++......+ =+.++|++..+ +..++.+.+ +.++.+
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~ 316 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGID 316 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCC
Confidence 45799999999999999999998876432 24577777665 455665554 555543
No 368
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.08 E-value=0.2 Score=56.48 Aligned_cols=88 Identities=19% Similarity=0.348 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCcc-------ccchH-----
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTL-DIKKIQQEIAEKLGLVLE-------EETGS----- 241 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-------~~~~~----- 241 (1079)
.-..++|+|..|+|||||++++++... .+.++++-+++.. .+.+..++.+..-+.... +++..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 346889999999999999999987654 3556666666543 344555555443332110 11111
Q ss_pred -HHHHHHHHHHH-cCCcEEEEEeCCCC
Q 044755 242 -RRASRLYERLK-KEEKILIILDNIWK 266 (1079)
Q Consensus 242 -~~~~~l~~~l~-~~~~~LlvlDdv~~ 266 (1079)
..+..+.+++. +++++|+++||+-.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 11233445553 58999999999855
No 369
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.08 E-value=0.074 Score=60.24 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=39.2
Q ss_pred ccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCC
Q 044755 156 AFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLF 206 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 206 (1079)
.++||++.++.+...+..+ .-|.+.|++|+|||++|+.+.........|
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F 69 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAF 69 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcc
Confidence 4789999999988887744 468899999999999999999875433334
No 370
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.04 E-value=0.21 Score=51.71 Aligned_cols=122 Identities=20% Similarity=0.231 Sum_probs=70.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-----ccCHHHHHHHHHHHhCCCccc--------cchH
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-----TLDIKKIQQEIAEKLGLVLEE--------ETGS 241 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~--------~~~~ 241 (1079)
+..++++||..|.||||+++.+..-.+. -.+.+++...+ .....+-..+++..++..... +..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 3469999999999999999999876642 23344443222 222344455666776643321 1222
Q ss_pred HHHHHHHHHHHcCCcEEEEEeCCCCcccc---ccccCCCC--CCCCCcEEEEEecChhhhhhcC
Q 044755 242 RRASRLYERLKKEEKILIILDNIWKCVDL---EAVGIPFG--DDHKGCKLLLTARDRNVLFRMG 300 (1079)
Q Consensus 242 ~~~~~l~~~l~~~~~~LlvlDdv~~~~~~---~~l~~~l~--~~~~gs~iivTtR~~~v~~~~~ 300 (1079)
.+...+.+.+. -++=++|.|..-+..+. ..+...+. ....|-..++.|.+-.++..+.
T Consensus 115 rQRi~IARALa-l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 115 RQRIGIARALA-LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhHHHHHHHh-hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 22333444444 58899999986554221 11111111 1223667888888888877643
No 371
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.03 E-value=0.078 Score=50.62 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQARED 203 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (1079)
..||.+.|.+|.||||||+++.+.....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~ 29 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR 29 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999998754
No 372
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.02 E-value=0.16 Score=53.98 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQARE 202 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (1079)
+.|.|+|.+|.||||+|+++......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999988764
No 373
>PRK08149 ATP synthase SpaL; Validated
Probab=94.02 E-value=0.17 Score=56.89 Aligned_cols=89 Identities=12% Similarity=0.287 Sum_probs=54.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCC-----cc--ccchH-----
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGLV-----LE--EETGS----- 241 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-----~~--~~~~~----- 241 (1079)
+-..++|+|..|+|||||++.++.... -+.+++..+.. ..++.++..+........ .. +.+..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 346889999999999999999987543 34444454543 335666666665543221 11 11111
Q ss_pred -HHHHHHHHHHH-cCCcEEEEEeCCCCc
Q 044755 242 -RRASRLYERLK-KEEKILIILDNIWKC 267 (1079)
Q Consensus 242 -~~~~~l~~~l~-~~~~~LlvlDdv~~~ 267 (1079)
..+..+.+++. +++++||++||+-..
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 12333444443 489999999998653
No 374
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.01 E-value=1.9 Score=46.65 Aligned_cols=166 Identities=14% Similarity=0.096 Sum_probs=91.6
Q ss_pred HHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHh--------hhcCCCCEEEEEEe-CCccCHHHHHHHHHHHhCC
Q 044755 164 LKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQA--------REDKLFDLVVFSEV-SQTLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 164 ~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~--------~~~~~F~~~~wv~~-~~~~~~~~~~~~i~~~l~~ 233 (1079)
++.+...+..++. .+.-++|..|.||+++|..+.+.. ....|-+-..++.. +....++++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 3444555555544 466699999999999999998886 22223222333332 2223333333 33333321
Q ss_pred CccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEEEec-Chhhhhh-cCCCceEeCCC
Q 044755 234 VLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLLTAR-DRNVLFR-MGSQKNFSIDI 309 (1079)
Q Consensus 234 ~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~-~~~~~~~~l~~ 309 (1079)
.. ...+.+=++|+||++... ....+...+-....++.+|++|. ...+... ......+++.+
T Consensus 84 ~~---------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~ 148 (299)
T PRK07132 84 SS---------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKE 148 (299)
T ss_pred CC---------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCC
Confidence 10 011467788888887653 23333333333344566665554 4444433 34456899999
Q ss_pred CCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHH
Q 044755 310 LNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTT 352 (1079)
Q Consensus 310 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 352 (1079)
+++++....+.+. + . + ++.++.++...+|.--|+..
T Consensus 149 l~~~~l~~~l~~~-~--~-~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 149 PDQQKILAKLLSK-N--K-E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCHHHHHHHHHHc-C--C-C---hhHHHHHHHHcCCHHHHHHH
Confidence 9999998777664 1 1 1 23366667667763344443
No 375
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.00 E-value=0.12 Score=51.84 Aligned_cols=51 Identities=22% Similarity=0.417 Sum_probs=34.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCcc
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLE 236 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 236 (1079)
.|+|+|-||+||||+|.........++.|+ ++=|+....+++ ..+||...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL-------~~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNL-------PEALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCCh-------HHhcCCCCC
Confidence 589999999999999999777665444343 444555555543 445565443
No 376
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.99 E-value=0.15 Score=57.64 Aligned_cols=89 Identities=19% Similarity=0.346 Sum_probs=51.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHh-----CCCccc-cchH------HH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKL-----GLVLEE-ETGS------RR 243 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l-----~~~~~~-~~~~------~~ 243 (1079)
-..++|+|..|+|||||++.+..... ....+++....+..++.++....+... +..... ++.. ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35899999999999999998876543 123455554434445555555444332 111111 1111 11
Q ss_pred HHHHHHHHH-cCCcEEEEEeCCCCc
Q 044755 244 ASRLYERLK-KEEKILIILDNIWKC 267 (1079)
Q Consensus 244 ~~~l~~~l~-~~~~~LlvlDdv~~~ 267 (1079)
...+.+++. +++++|+++||+-..
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHHH
Confidence 233444443 479999999998553
No 377
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.98 E-value=0.056 Score=55.62 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 378
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.96 E-value=0.18 Score=57.46 Aligned_cols=92 Identities=22% Similarity=0.246 Sum_probs=58.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCC--CEEEEEEeCCc-cCHHHHHHHHHHHhCCCcc-------ccchH----
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLF--DLVVFSEVSQT-LDIKKIQQEIAEKLGLVLE-------EETGS---- 241 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~-------~~~~~---- 241 (1079)
-.-++|.|..|+|||||+.++.+.......+ ..++++-+++. ..+.++.+++...-..... +.+..
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 3578999999999999999999876532111 15677777654 4456666666543222110 11111
Q ss_pred --HHHHHHHHHHH--cCCcEEEEEeCCCCc
Q 044755 242 --RRASRLYERLK--KEEKILIILDNIWKC 267 (1079)
Q Consensus 242 --~~~~~l~~~l~--~~~~~LlvlDdv~~~ 267 (1079)
..+..+.++++ +++++|+++||+-..
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 12344566666 589999999998653
No 379
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.95 E-value=0.68 Score=49.23 Aligned_cols=96 Identities=11% Similarity=0.172 Sum_probs=54.5
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccc-------
Q 044755 165 KSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEE------- 237 (1079)
Q Consensus 165 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------- 237 (1079)
++..+++.+.+..+|.|+|.+|.|||||+..+.+....+ .. ++.+ .....+..+ .+.++..+.+...
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~--~~-~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~C 166 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS--VP-CAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGC 166 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC--CC-EEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCC
Confidence 334555556789999999999999999999999886532 22 2222 222222222 2234444433211
Q ss_pred cchHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 044755 238 ETGSRRASRLYERLKKEEKILIILDNIWK 266 (1079)
Q Consensus 238 ~~~~~~~~~l~~~l~~~~~~LlvlDdv~~ 266 (1079)
.............|....-=++|++++.+
T Consensus 167 hl~a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 167 HLDAQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred cCcHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 12223334444555433445778888865
No 380
>PTZ00301 uridine kinase; Provisional
Probab=93.94 E-value=0.056 Score=55.03 Aligned_cols=26 Identities=23% Similarity=0.580 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..+|+|.|.+|.||||||+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 47999999999999999999987764
No 381
>PRK06762 hypothetical protein; Provisional
Probab=93.90 E-value=0.056 Score=53.30 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
.+|.|+|++|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 382
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.88 E-value=0.11 Score=49.10 Aligned_cols=39 Identities=23% Similarity=0.447 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ 216 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 216 (1079)
++|.|+|..|+|||||++.+.+.... ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~-~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR-RGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH-cCCceEEEEEccC
Confidence 58999999999999999999999864 3455555665554
No 383
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.80 E-value=0.064 Score=55.07 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
+...+|+|+|..|+||||||+.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998754
No 384
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.78 E-value=0.33 Score=48.77 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=59.2
Q ss_pred cccccHHHHHHHHHHH----hcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 044755 155 EAFESRLCALKSVQNA----LTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEK 230 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~----l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 230 (1079)
..++|.+...+.+++- +....---|-+||.-|+||+.|++++.+....+ .-. -|.|.+.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glr--LVEV~k~------------- 122 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLR--LVEVDKE------------- 122 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCe--EEEEcHH-------------
Confidence 3456766666665543 233344578899999999999999999987643 111 2333221
Q ss_pred hCCCccccchHHHHHHHHHHHH-cCCcEEEEEeCCCCc---cccccccCCCC
Q 044755 231 LGLVLEEETGSRRASRLYERLK-KEEKILIILDNIWKC---VDLEAVGIPFG 278 (1079)
Q Consensus 231 l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~---~~~~~l~~~l~ 278 (1079)
+......+.+.|+ ...||+|+.||..-+ .....++..+.
T Consensus 123 ---------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~Le 165 (287)
T COG2607 123 ---------DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALE 165 (287)
T ss_pred ---------HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhc
Confidence 1112334445554 258999999998543 34555555553
No 385
>PRK03839 putative kinase; Provisional
Probab=93.76 E-value=0.056 Score=54.09 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.|.|+|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998864
No 386
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.73 E-value=0.062 Score=54.29 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
+.++|.|+|++|+||||+|+.+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 387
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.72 E-value=0.38 Score=51.14 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=30.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ 216 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 216 (1079)
-+++.|.|.+|+|||++|.+++.....+ =..++|++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 5799999999999999999987654322 24678888864
No 388
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.71 E-value=0.13 Score=61.45 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=59.3
Q ss_pred CCccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHh
Q 044755 152 KGYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKL 231 (1079)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 231 (1079)
.....++|+++.++.+..++... +.+.++|.+|+||||+|+.+.+... ..+++..+|...+ ..+...+++.++.++
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~np-~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPNP-EDPNNPKIRTVPAGK 103 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeCC-CcchHHHHHHHHHhc
Confidence 34456789888888887777655 4788999999999999999998764 2346778887764 447778888887766
Q ss_pred CC
Q 044755 232 GL 233 (1079)
Q Consensus 232 ~~ 233 (1079)
|.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 64
No 389
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.70 E-value=0.052 Score=48.77 Aligned_cols=23 Identities=48% Similarity=0.758 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 044755 179 VGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
|-|+|.+|+|||++|+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999888765
No 390
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.70 E-value=0.17 Score=52.06 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=39.4
Q ss_pred HHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHH
Q 044755 164 LKSVQNALT--DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQE 226 (1079)
Q Consensus 164 ~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 226 (1079)
..++++.+. ..+..+|+|.|.+|+|||||...+......+.+=-.++=|+-|.+++--.++.+
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc
Confidence 445555554 346789999999999999999999988875544445666666777766555543
No 391
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.67 E-value=0.099 Score=51.23 Aligned_cols=115 Identities=16% Similarity=0.235 Sum_probs=60.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc--cCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHc
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT--LDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKK 253 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (1079)
-.+++|+|..|.|||||.+.++-... ...+.+++..... .+..+.. ....+...+-+..+.+.-.+.+.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~qLS~G~~qrl~laral~- 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDAR---RAGIAMVYQLSVGERQMVEIARALA- 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHH---hcCeEEEEecCHHHHHHHHHHHHHh-
Confidence 36999999999999999999986543 2345555532211 1111111 1112211111122223333444444
Q ss_pred CCcEEEEEeCCCCccc---cccccCCCCC-CCCCcEEEEEecChhhhh
Q 044755 254 EEKILIILDNIWKCVD---LEAVGIPFGD-DHKGCKLLLTARDRNVLF 297 (1079)
Q Consensus 254 ~~~~LlvlDdv~~~~~---~~~l~~~l~~-~~~gs~iivTtR~~~v~~ 297 (1079)
.++-++++|+.-..-+ .+.+...+.. ...|..||++|.+...+.
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 4778889998765322 1122111211 123667899998876443
No 392
>PRK01184 hypothetical protein; Provisional
Probab=93.64 E-value=0.34 Score=48.61 Aligned_cols=22 Identities=50% Similarity=0.832 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQ 199 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~ 199 (1079)
.+|+|+|++|+||||+|+ ++++
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 489999999999999987 4443
No 393
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.61 E-value=0.32 Score=49.26 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCC--------CEEEEEEeCCc
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLF--------DLVVFSEVSQT 217 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~~~~ 217 (1079)
.++.|+|.+|+||||++..+.........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 588999999999999999998876543323 35788888765
No 394
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=93.61 E-value=0.029 Score=53.31 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 159 SRLCALKSVQNALT--DVNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 159 gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
|+...++++.+.+. .....-|.|.|..|+||+++|+.+++...
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 33344445544443 12335678999999999999999987654
No 395
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.61 E-value=0.28 Score=56.59 Aligned_cols=87 Identities=23% Similarity=0.305 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCcccc--chHHHHHHHHHHHH
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEE--TGSRRASRLYERLK 252 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~ 252 (1079)
.-.++.|.|.+|+|||||+.++........ ..++|++.... ..++. .-+..++...+.. ........+.+.+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi~-~ra~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQIK-MRAIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHHH-HHHHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 347999999999999999999987764321 35788877643 33332 2234454432210 00112334444554
Q ss_pred cCCcEEEEEeCCCC
Q 044755 253 KEEKILIILDNIWK 266 (1079)
Q Consensus 253 ~~~~~LlvlDdv~~ 266 (1079)
+.+.-++|+|.+..
T Consensus 168 ~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 168 EENPQACVIDSIQT 181 (454)
T ss_pred hcCCcEEEEecchh
Confidence 44556778887744
No 396
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.59 E-value=0.4 Score=54.25 Aligned_cols=92 Identities=21% Similarity=0.372 Sum_probs=59.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCc-------cccchHH----
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT-LDIKKIQQEIAEKLGLVL-------EEETGSR---- 242 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~---- 242 (1079)
.-..++|.|..|+|||||+.++....... +=+.++++-+++. ..+.++++++...-.... .+++...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34588999999999999999998776532 2357788888654 445667776654322211 1111111
Q ss_pred --HHHHHHHHHH--cCCcEEEEEeCCCCc
Q 044755 243 --RASRLYERLK--KEEKILIILDNIWKC 267 (1079)
Q Consensus 243 --~~~~l~~~l~--~~~~~LlvlDdv~~~ 267 (1079)
.+..+.++++ +++++|+++||+-..
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 2344555664 379999999999653
No 397
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.58 E-value=0.39 Score=50.48 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCCcHHHHH-HHHHHHhhhcCCCCEE-EEEEeCCc-cCHHHHHHHHHHHhCCCc-------cccchHH---
Q 044755 176 VSIVGVYGMGGIGKTTLV-KEVARQAREDKLFDLV-VFSEVSQT-LDIKKIQQEIAEKLGLVL-------EEETGSR--- 242 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~--- 242 (1079)
-.-++|+|..|+|||+|| ..+.+.. .-+.+ +++-+.+. ....++.+++...-.... .++....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 357899999999999995 6666543 23444 67777665 345666666654322111 1111111
Q ss_pred ---HHHHHHHHHH-cCCcEEEEEeCCCCc-cccccc
Q 044755 243 ---RASRLYERLK-KEEKILIILDNIWKC-VDLEAV 273 (1079)
Q Consensus 243 ---~~~~l~~~l~-~~~~~LlvlDdv~~~-~~~~~l 273 (1079)
.+..+.+++. +++.+|+|+||+-.. ..+.++
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 1233344443 479999999999653 334444
No 398
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.57 E-value=0.22 Score=57.41 Aligned_cols=86 Identities=26% Similarity=0.336 Sum_probs=51.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCcccc--chHHHHHHHHHHHHc
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEE--TGSRRASRLYERLKK 253 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 253 (1079)
-.++.|.|.+|+|||||+.+++.....+ -..++|++.... ..++. ..++.++...+.. ........+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~-~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIK-LRAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHH-HHHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4699999999999999999998876522 245788887553 33332 2255555432210 001113344444544
Q ss_pred CCcEEEEEeCCCC
Q 044755 254 EEKILIILDNIWK 266 (1079)
Q Consensus 254 ~~~~LlvlDdv~~ 266 (1079)
.+.-++|+|.+..
T Consensus 155 ~~~~lVVIDSIq~ 167 (446)
T PRK11823 155 EKPDLVVIDSIQT 167 (446)
T ss_pred hCCCEEEEechhh
Confidence 4556778887743
No 399
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.56 E-value=0.21 Score=55.45 Aligned_cols=76 Identities=22% Similarity=0.278 Sum_probs=47.8
Q ss_pred ccccHHHHHHHHHHHhcCC--------------CceEEEEEcCCCCcHHHHHHHHHHHhhhcC-CCCEEEEEEeC-CccC
Q 044755 156 AFESRLCALKSVQNALTDV--------------NVSIVGVYGMGGIGKTTLVKEVARQAREDK-LFDLVVFSEVS-QTLD 219 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~-~~~~ 219 (1079)
.++|.++.++.+.-++... ..+-|.++|++|+|||++|+.++......- +.+..-|+..+ ...+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 3678887777776555421 236789999999999999999998875320 01222222222 2236
Q ss_pred HHHHHHHHHHHh
Q 044755 220 IKKIQQEIAEKL 231 (1079)
Q Consensus 220 ~~~~~~~i~~~l 231 (1079)
.+++++.+....
T Consensus 93 vE~i~r~l~e~A 104 (441)
T TIGR00390 93 VESMVRDLTDAA 104 (441)
T ss_pred HHHHHHHHHHHH
Confidence 677777766543
No 400
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.52 E-value=0.36 Score=52.29 Aligned_cols=58 Identities=19% Similarity=0.344 Sum_probs=41.2
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc-cCHHHHHHHH
Q 044755 166 SVQNALTD-VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT-LDIKKIQQEI 227 (1079)
Q Consensus 166 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i 227 (1079)
+.++.+.. .+-..++|.|..|+|||+|++++.+... -+.++++-+.+. ..+.++++++
T Consensus 146 rvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 146 RVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred hhhhccccccCCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHH
Confidence 34444441 2345899999999999999999988643 467888888765 3455666654
No 401
>PRK00625 shikimate kinase; Provisional
Probab=93.52 E-value=0.062 Score=52.89 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.|.++||+|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 402
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=93.51 E-value=0.076 Score=53.28 Aligned_cols=28 Identities=43% Similarity=0.604 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQARE 202 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (1079)
.+.+|+|.|.+|.||||+|+.++.....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4579999999999999999999988763
No 403
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.47 E-value=0.07 Score=49.07 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKK 222 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 222 (1079)
.+-|.|.|-+|+||||+|.+++.... .-|+++|+-..-..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~vkEn~ 46 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDLVKENN 46 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhHHhhhc
Confidence 35688999999999999999996543 23677765433333
No 404
>PRK04040 adenylate kinase; Provisional
Probab=93.43 E-value=0.074 Score=53.30 Aligned_cols=46 Identities=26% Similarity=0.504 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1079)
.+|.|+|++|+||||+++.+.+... ..+.. ++ ..++..+++...+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~--~~~~~---~~------~g~~~~~~a~~~g~ 48 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK--EDYKI---VN------FGDVMLEVAKEEGL 48 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc--cCCeE---Ee------cchHHHHHHHHcCC
Confidence 5899999999999999999998763 11222 22 24455666666654
No 405
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.42 E-value=0.13 Score=53.59 Aligned_cols=65 Identities=25% Similarity=0.335 Sum_probs=49.7
Q ss_pred HHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHH
Q 044755 165 KSVQNALT--DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 165 ~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
.+++..+. .++..||+|.|.||+|||||.-.+-.....+.+=-.++=|+-|.+++--.++.+-.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiR 104 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIR 104 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhh
Confidence 45555554 456679999999999999999999988876666666777888888877777655433
No 406
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.40 E-value=0.096 Score=53.22 Aligned_cols=60 Identities=25% Similarity=0.350 Sum_probs=37.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEE-------EEeCCccCHHHHH--HHHHHHhCCC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVF-------SEVSQTLDIKKIQ--QEIAEKLGLV 234 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-------v~~~~~~~~~~~~--~~i~~~l~~~ 234 (1079)
+...|.++||+|.||||+.++++.....++.-..++= +...-..|+.+.. ++..++.+..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG 86 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG 86 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence 4567889999999999999999988765433222221 1122234555543 4667766543
No 407
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.38 E-value=0.28 Score=55.31 Aligned_cols=89 Identities=18% Similarity=0.383 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCc-------cccchHH----
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTL-DIKKIQQEIAEKLGLVL-------EEETGSR---- 242 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~---- 242 (1079)
+-..++|.|..|+|||||.+.+++... -+.++++-+++.. .+.++.++.+..-+... .+++...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 346899999999999999999988654 4677888777653 45555544443322111 0111111
Q ss_pred --HHHHHHHHHH-cCCcEEEEEeCCCCc
Q 044755 243 --RASRLYERLK-KEEKILIILDNIWKC 267 (1079)
Q Consensus 243 --~~~~l~~~l~-~~~~~LlvlDdv~~~ 267 (1079)
.+..+.+++. +++++|+++||+-..
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1233444553 589999999998653
No 408
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.37 E-value=0.35 Score=48.36 Aligned_cols=118 Identities=25% Similarity=0.307 Sum_probs=63.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC--ccCHHHHHH------HHHHHhCCCcc------c-cch
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ--TLDIKKIQQ------EIAEKLGLVLE------E-ETG 240 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~------~i~~~l~~~~~------~-~~~ 240 (1079)
-.+++|+|..|.|||||++.++-... ...+.+++.-.. ..+...... ++++.++.... . +..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 46999999999999999999987543 234444443211 112222111 24555554211 1 112
Q ss_pred HHHHHHHHHHHHcCCcEEEEEeCCCCccc---cccccCCCCC--CCCCcEEEEEecChhhhh
Q 044755 241 SRRASRLYERLKKEEKILIILDNIWKCVD---LEAVGIPFGD--DHKGCKLLLTARDRNVLF 297 (1079)
Q Consensus 241 ~~~~~~l~~~l~~~~~~LlvlDdv~~~~~---~~~l~~~l~~--~~~gs~iivTtR~~~v~~ 297 (1079)
..+.-.+.+.+. ..+-++++|+--..-+ .+.+...+.. ...|..||++|.+.+...
T Consensus 102 ~~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 102 ERQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 223333444454 4788999998765322 1222222211 112667899998876543
No 409
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.37 E-value=0.44 Score=45.77 Aligned_cols=115 Identities=23% Similarity=0.219 Sum_probs=60.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEe---CCccCHHHHHHHHHHHh-----CCC--ccccchHHH---
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEV---SQTLDIKKIQQEIAEKL-----GLV--LEEETGSRR--- 243 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---~~~~~~~~~~~~i~~~l-----~~~--~~~~~~~~~--- 243 (1079)
..|-|++..|.||||+|...+-..... .+ .+.++.. ........+++.+ ..+ +.. .......+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH-GY-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-CC-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 478899999999999999888776532 22 2333332 2223333333333 000 000 000111111
Q ss_pred ----HHHHHHHHHcCCcEEEEEeCCCCcc-----ccccccCCCCCCCCCcEEEEEecChh
Q 044755 244 ----ASRLYERLKKEEKILIILDNIWKCV-----DLEAVGIPFGDDHKGCKLLLTARDRN 294 (1079)
Q Consensus 244 ----~~~l~~~l~~~~~~LlvlDdv~~~~-----~~~~l~~~l~~~~~gs~iivTtR~~~ 294 (1079)
.....+.+..+.-=|+|||++-... +.+.+...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1222333333455699999986542 23334334444455678999999864
No 410
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.34 E-value=0.0098 Score=57.77 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=6.7
Q ss_pred cccceEEEecccccc
Q 044755 974 EHLQHLEICHCKGLQ 988 (1079)
Q Consensus 974 ~~L~~L~i~~c~~l~ 988 (1079)
++|+.|+|++|+.++
T Consensus 151 ~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRIT 165 (221)
T ss_pred cchheeeccCCCeec
Confidence 444444444444443
No 411
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.33 E-value=0.22 Score=52.85 Aligned_cols=24 Identities=33% Similarity=0.659 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.|.++|.+|+||||+|+.+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998775
No 412
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.31 E-value=0.19 Score=52.44 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=34.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLG 232 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (1079)
.-+++.|.|.+|+|||++|.++......+. =+.++||+.... ..++.+.+. +++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~ee~--~~~l~~~~~-s~g 71 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-GEKVLYVSFEEP--PEELIENMK-SFG 71 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-T--EEEEESSS---HHHHHHHHH-TTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-CCcEEEEEecCC--HHHHHHHHH-HcC
Confidence 347999999999999999998765543220 135788887664 355554433 444
No 413
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.27 E-value=0.33 Score=58.77 Aligned_cols=85 Identities=20% Similarity=0.329 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccc------cchHHHHHHHH
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEE------ETGSRRASRLY 248 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~ 248 (1079)
.-+++-|+|.+|+||||||.+++...... =..++|++....++. ..+++++...+. ...+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 35789999999999999998876654322 255799998887774 367777765431 12222233333
Q ss_pred HHHHcCCcEEEEEeCCCC
Q 044755 249 ERLKKEEKILIILDNIWK 266 (1079)
Q Consensus 249 ~~l~~~~~~LlvlDdv~~ 266 (1079)
..+..++--|||+|.+..
T Consensus 132 ~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 132 MLIRSGALDIVVIDSVAA 149 (790)
T ss_pred HHhhcCCCeEEEEcchhh
Confidence 334445677899998754
No 414
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.26 E-value=0.15 Score=48.69 Aligned_cols=104 Identities=25% Similarity=0.302 Sum_probs=55.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEE 255 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1079)
-.+++|+|..|.|||||++.+...... ..+.+|+.-.. .++...+-+..+.+...+.+.+. .+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~~-------------~i~~~~~lS~G~~~rv~laral~-~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGSTV-------------KIGYFEQLSGGEKMRLALAKLLL-EN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCeE-------------EEEEEccCCHHHHHHHHHHHHHh-cC
Confidence 368999999999999999999876432 24444442210 00000000111222333444454 46
Q ss_pred cEEEEEeCCCCccc---cccccCCCCCCCCCcEEEEEecChhhhhh
Q 044755 256 KILIILDNIWKCVD---LEAVGIPFGDDHKGCKLLLTARDRNVLFR 298 (1079)
Q Consensus 256 ~~LlvlDdv~~~~~---~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 298 (1079)
+-++++|+--..-+ .+.+...+..- +..||++|.+.+.+..
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 77889998654322 11221112111 2468888888766543
No 415
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.25 E-value=0.11 Score=53.67 Aligned_cols=23 Identities=22% Similarity=0.579 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 044755 179 VGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
|.|+|++|+||||+|+.+++...
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999988764
No 416
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.24 E-value=0.2 Score=49.69 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-.+++|+|..|.|||||++.++-..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3689999999999999999998764
No 417
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.24 E-value=0.022 Score=55.45 Aligned_cols=69 Identities=19% Similarity=0.277 Sum_probs=53.2
Q ss_pred CCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeeccccccc
Q 044755 771 DAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQ 841 (1079)
Q Consensus 771 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~ 841 (1079)
..+++++.|.+.+|..+.+|+...... ..|+|+.|+|++|+.+++-. ...+..+++|+.|.|.+.+.+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCchhhh
Confidence 567788888899998888887655543 78999999999999888752 2456678888888888776553
No 418
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.22 E-value=0.15 Score=47.24 Aligned_cols=27 Identities=33% Similarity=0.299 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQARE 202 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (1079)
..+|.+.|.-|+||||+++.+++....
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 358999999999999999999988653
No 419
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.22 E-value=0.24 Score=56.02 Aligned_cols=46 Identities=26% Similarity=0.174 Sum_probs=34.3
Q ss_pred ccccHHHHHHHHHHHhcC-------C---------CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 156 AFESRLCALKSVQNALTD-------V---------NVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~-------~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.++|.+..++.+..++.+ . ..+.+.++|++|+|||++|+.+++...
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 367888888777555421 0 135689999999999999999987653
No 420
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.18 E-value=0.33 Score=52.72 Aligned_cols=87 Identities=20% Similarity=0.384 Sum_probs=52.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeC-CccCHHHHHHHHHHHhCCCc-------cccchH------
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVS-QTLDIKKIQQEIAEKLGLVL-------EEETGS------ 241 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~-------~~~~~~------ 241 (1079)
-..++|+|..|+|||||++.+..... -+..+..-+. +..++.+...+....-+... .+++..
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999999887653 2444444444 34456666666655433211 011111
Q ss_pred HHHHHHHHHHH-cCCcEEEEEeCCCC
Q 044755 242 RRASRLYERLK-KEEKILIILDNIWK 266 (1079)
Q Consensus 242 ~~~~~l~~~l~-~~~~~LlvlDdv~~ 266 (1079)
..+..+.+++. +++.+|+++||+-.
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchH
Confidence 11233344443 48999999999855
No 421
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.17 E-value=0.37 Score=47.20 Aligned_cols=81 Identities=16% Similarity=0.155 Sum_probs=45.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC-CcE
Q 044755 179 VGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKE-EKI 257 (1079)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~~ 257 (1079)
+.|.|..|.|||++|.++.... ...++++.-...++.+ +.+.|.+.-......-...+....+.+.+.+. +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 6789999999999999997652 2456777666666543 44443332111111111122223344444321 233
Q ss_pred EEEEeCCC
Q 044755 258 LIILDNIW 265 (1079)
Q Consensus 258 LlvlDdv~ 265 (1079)
.+++|.+.
T Consensus 76 ~VLIDclt 83 (169)
T cd00544 76 VVLIDCLT 83 (169)
T ss_pred EEEEEcHh
Confidence 79999864
No 422
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.16 E-value=3.2 Score=45.37 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=33.8
Q ss_pred eEeCCCCCHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHHcCCCchH
Q 044755 304 NFSIDILNEEEAWRLFKLMADDH--VENRELQSTATEVAQACKGLPIA 349 (1079)
Q Consensus 304 ~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~i~~~~~glPla 349 (1079)
++++++++.+|+..++....... ......+...+++.-..+|.|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 78999999999999999888322 11133455677777777998853
No 423
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.14 E-value=0.18 Score=54.69 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=37.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQE 226 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 226 (1079)
.+++.+.|.|||||||.|.+.+-...... ..++-|+..+..++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999766655332 44778888777777777654
No 424
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.12 E-value=1.2 Score=48.25 Aligned_cols=25 Identities=40% Similarity=0.385 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
+-|..+|++|.|||-||++|+.+..
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 5678899999999999999999876
No 425
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.11 E-value=1.1 Score=48.98 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQARE 202 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (1079)
+..++.++|+.|+||||++..++.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4679999999999999999999988763
No 426
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.08 E-value=0.26 Score=46.05 Aligned_cols=114 Identities=15% Similarity=0.277 Sum_probs=39.8
Q ss_pred CCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCc-cccccccccEEeccccccCC--cccccCCccc
Q 044755 525 ECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECMLDD--IAIIGKLKNL 601 (1079)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L 601 (1079)
.+++|+.+.+.. ....+ ....|.++..|+.+.+.++ +..++. .+..+..|+++.+.. .+.. ...+..+.+|
T Consensus 10 ~~~~l~~i~~~~--~~~~I--~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 10 NCSNLESITFPN--TIKKI--GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp T-TT--EEEETS--T--EE---TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred CCCCCCEEEECC--CeeEe--Chhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344555555543 12233 4455566656666666553 444433 244555555555543 2222 2334445555
Q ss_pred ceeeccCCcCcccCh-hhccCCcccEEcccccccccccChhhhhcccc
Q 044755 602 EILSFWGSVIVMLPE-ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVR 648 (1079)
Q Consensus 602 ~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~ 648 (1079)
+.+++..+ +..++. .+.+. +|+.+.+.. .+..++...+.+.++
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTK 127 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCcccccccc
Confidence 55555433 333322 23333 555554433 233444444444333
No 427
>PRK05922 type III secretion system ATPase; Validated
Probab=93.07 E-value=0.42 Score=53.92 Aligned_cols=88 Identities=20% Similarity=0.388 Sum_probs=52.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCcc-------ccchH------
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT-LDIKKIQQEIAEKLGLVLE-------EETGS------ 241 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~-------~~~~~------ 241 (1079)
-..++|+|..|+|||||++.+..... .+..+++-++.. ..+.+.+.+.......... +++..
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 45789999999999999999987543 344444444432 3344555555443322110 11111
Q ss_pred HHHHHHHHHHH-cCCcEEEEEeCCCCc
Q 044755 242 RRASRLYERLK-KEEKILIILDNIWKC 267 (1079)
Q Consensus 242 ~~~~~l~~~l~-~~~~~LlvlDdv~~~ 267 (1079)
..+..+.+++. +++++|+++||+-..
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 12334455553 589999999999653
No 428
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.06 E-value=0.31 Score=48.49 Aligned_cols=118 Identities=24% Similarity=0.245 Sum_probs=66.5
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCCE--EEEEEeCCccCHHHHHHHHHHHhC--------CCc
Q 044755 167 VQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQARED-KLFDL--VVFSEVSQTLDIKKIQQEIAEKLG--------LVL 235 (1079)
Q Consensus 167 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~--~~wv~~~~~~~~~~~~~~i~~~l~--------~~~ 235 (1079)
++.-+-+....-..|.|++|+|||||.+.+++-.... ++|-. +.-|+-+. +|+..+. ...
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers---------EIag~~~gvpq~~~g~R~ 198 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS---------EIAGCLNGVPQHGRGRRM 198 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc---------hhhccccCCchhhhhhhh
Confidence 4444555555557899999999999999998876542 23422 22222221 2222111 111
Q ss_pred cccchHHHHHHHHHHHHcCCcEEEEEeCCCCccccccccCCCCCCCCCcEEEEEecChhhh
Q 044755 236 EEETGSRRASRLYERLKKEEKILIILDNIWKCVDLEAVGIPFGDDHKGCKLLLTARDRNVL 296 (1079)
Q Consensus 236 ~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 296 (1079)
+-.+..-....++.....-.+=++|+|.+-.+++-..+..++ +.|.+++.|..--.+.
T Consensus 199 dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~ie 256 (308)
T COG3854 199 DVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGIE 256 (308)
T ss_pred hhcccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccHH
Confidence 111111122333344444577799999998876655554443 4588888887755443
No 429
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.01 E-value=0.26 Score=55.83 Aligned_cols=90 Identities=18% Similarity=0.317 Sum_probs=54.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCcc-------ccchHH-----
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLE-------EETGSR----- 242 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~~----- 242 (1079)
+-..++|.|..|+|||||++.++...... ..+++..-.+...+.++.+.+...-+.... +.+...
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 44689999999999999999998765321 234444434445566666666544322111 111111
Q ss_pred -HHHHHHHHHH-cCCcEEEEEeCCCCc
Q 044755 243 -RASRLYERLK-KEEKILIILDNIWKC 267 (1079)
Q Consensus 243 -~~~~l~~~l~-~~~~~LlvlDdv~~~ 267 (1079)
.+..+.+++. +++++|+++||+-..
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1233444553 579999999998553
No 430
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=93.01 E-value=0.37 Score=54.89 Aligned_cols=91 Identities=22% Similarity=0.354 Sum_probs=58.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCc--------------cccch
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTL-DIKKIQQEIAEKLGLVL--------------EEETG 240 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~--------------~~~~~ 240 (1079)
-..++|.|..|+|||+|+.++...... .+=+.++++-+++.. .+.++..++...-.... .+++.
T Consensus 161 GQR~gIfgg~GvGKs~L~~~~~~~~~~-~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~ 239 (494)
T CHL00060 161 GGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 239 (494)
T ss_pred CCEEeeecCCCCChhHHHHHHHHHHHH-hcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCH
Confidence 458899999999999999998877331 112788888887654 45666666665211110 01111
Q ss_pred H------HHHHHHHHHHHc-C-CcEEEEEeCCCCc
Q 044755 241 S------RRASRLYERLKK-E-EKILIILDNIWKC 267 (1079)
Q Consensus 241 ~------~~~~~l~~~l~~-~-~~~LlvlDdv~~~ 267 (1079)
. ..+..+.++++. + +++||++||+-..
T Consensus 240 ~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 240 GARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 1 123445666653 4 4999999999653
No 431
>PF13245 AAA_19: Part of AAA domain
Probab=92.97 E-value=0.27 Score=40.76 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=18.9
Q ss_pred CceEEEEEcCCCCcHHH-HHHHHHHHh
Q 044755 175 NVSIVGVYGMGGIGKTT-LVKEVARQA 200 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTt-La~~v~~~~ 200 (1079)
+.+++.|.|.+|.|||+ +++.+.+-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34688889999999994 455555444
No 432
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.92 E-value=0.2 Score=53.15 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=41.6
Q ss_pred ccccccHHHHHHH---HHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC
Q 044755 154 YEAFESRLCALKS---VQNALTDV--NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFD 207 (1079)
Q Consensus 154 ~~~~~gr~~~~~~---l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 207 (1079)
..+++|..+..+. +++++.+. .-+.|.|+|++|.|||+||-.+.+....+-.|-
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 3578887665443 56666644 457999999999999999999999987666663
No 433
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=92.89 E-value=0.4 Score=54.86 Aligned_cols=90 Identities=23% Similarity=0.300 Sum_probs=58.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhc---CCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCcc-------ccchH---
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQARED---KLFDLVVFSEVSQT-LDIKKIQQEIAEKLGLVLE-------EETGS--- 241 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~-------~~~~~--- 241 (1079)
-..++|.|..|+|||+|+.++.+....+ ..+ .++++-+++. ..+.++++++...-..... +.+..
T Consensus 143 GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~ 221 (460)
T PRK04196 143 GQKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERI 221 (460)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHH
Confidence 3578899999999999999999876532 111 6778888665 4466677766654222110 11111
Q ss_pred ---HHHHHHHHHHH--cCCcEEEEEeCCCC
Q 044755 242 ---RRASRLYERLK--KEEKILIILDNIWK 266 (1079)
Q Consensus 242 ---~~~~~l~~~l~--~~~~~LlvlDdv~~ 266 (1079)
-.+..+.++++ +++++|+++||+-.
T Consensus 222 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR 251 (460)
T PRK04196 222 LTPRMALTAAEYLAFEKGMHVLVILTDMTN 251 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcChHH
Confidence 12345566666 57999999999855
No 434
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.83 E-value=0.12 Score=51.47 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
...+|.|+|.+|+||||+|+.++....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456999999999999999999998875
No 435
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.81 E-value=0.9 Score=47.47 Aligned_cols=54 Identities=26% Similarity=0.358 Sum_probs=36.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1079)
.-.++.|.|.+|+||||+|.++......+ -..++|++.... ..++.+. +++++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~--~~~i~~~-~~~~g~ 72 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEES--RESIIRQ-AAQFGM 72 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCC--HHHHHHH-HHHhCC
Confidence 34799999999999999999877654322 356788887543 4454433 455553
No 436
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.77 E-value=0.21 Score=48.62 Aligned_cols=114 Identities=19% Similarity=0.268 Sum_probs=60.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCcc--CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTL--DIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKE 254 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1079)
.+++|+|..|.|||||++.+..... .....+++...... .... ....++...+-+..+.+...+...+. .
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~qlS~G~~~r~~l~~~l~-~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEE----LRRRIGYVPQLSGGQRQRVALARALL-L 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHH----HHhceEEEeeCCHHHHHHHHHHHHHh-c
Confidence 6999999999999999999987543 23455555432211 1111 11112211111122223333444454 4
Q ss_pred CcEEEEEeCCCCccc---cccccCCCCC-CCCCcEEEEEecChhhhhh
Q 044755 255 EKILIILDNIWKCVD---LEAVGIPFGD-DHKGCKLLLTARDRNVLFR 298 (1079)
Q Consensus 255 ~~~LlvlDdv~~~~~---~~~l~~~l~~-~~~gs~iivTtR~~~v~~~ 298 (1079)
.+-++++|+....-+ ...+...+.. ...+..|+++|...+....
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 678899998765422 1112111111 1125678999988776554
No 437
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.76 E-value=0.13 Score=50.31 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQARE 202 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (1079)
..++++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4579999999999999999999988763
No 438
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.70 E-value=0.14 Score=50.32 Aligned_cols=43 Identities=23% Similarity=0.162 Sum_probs=32.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLD 219 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 219 (1079)
..++.+.|+.|+|||.+|+.+++.... +.....+-++.+....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 467889999999999999999998753 2245667777766544
No 439
>PRK06851 hypothetical protein; Provisional
Probab=92.70 E-value=1.4 Score=48.69 Aligned_cols=44 Identities=27% Similarity=0.335 Sum_probs=34.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc
Q 044755 173 DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT 217 (1079)
Q Consensus 173 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 217 (1079)
++--+++.|.|.+|+|||||++.++..... +.++..++-|.+.+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~-~G~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEE-RGFDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCC
Confidence 344578999999999999999999998763 45777776666554
No 440
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.69 E-value=0.087 Score=52.40 Aligned_cols=23 Identities=48% Similarity=0.629 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
+|+|.|.+|.||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 441
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=92.65 E-value=0.36 Score=54.64 Aligned_cols=88 Identities=19% Similarity=0.399 Sum_probs=52.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCcc-------ccchH------
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT-LDIKKIQQEIAEKLGLVLE-------EETGS------ 241 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~-------~~~~~------ 241 (1079)
-..++|+|..|+|||||++.+..... .+.++...+... .+..++...+...-+.... ++...
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 45799999999999999999876432 345555545433 3455555555544332111 11111
Q ss_pred HHHHHHHHHHH-cCCcEEEEEeCCCCc
Q 044755 242 RRASRLYERLK-KEEKILIILDNIWKC 267 (1079)
Q Consensus 242 ~~~~~l~~~l~-~~~~~LlvlDdv~~~ 267 (1079)
..+..+.+++. +++++|+++||+-..
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchhHH
Confidence 11233444443 589999999998653
No 442
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=92.64 E-value=0.19 Score=55.22 Aligned_cols=46 Identities=24% Similarity=0.179 Sum_probs=38.7
Q ss_pred cccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 155 EAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
..++|.++.+..++-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 3568999988888777777767778899999999999999998665
No 443
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=92.64 E-value=0.15 Score=56.04 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=41.1
Q ss_pred ccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 154 YEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
...++|.++.+..|+..+.+..+.-|.|.|..|+||||+|+.+++-..
T Consensus 16 f~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred HHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 345789999898888888888888788999999999999999987654
No 444
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.63 E-value=0.38 Score=55.24 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=53.8
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEE-EEEeCCcc-CHHHHHHHHHHHhCC-Cccccc--
Q 044755 166 SVQNALTD-VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVV-FSEVSQTL-DIKKIQQEIAEKLGL-VLEEET-- 239 (1079)
Q Consensus 166 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~~~~~-~~~~~~~~i~~~l~~-~~~~~~-- 239 (1079)
++++++.. ..-....|+|.+|+|||||++.+.+.... .+-++.+ .+-+.+.. .+.++.+.+-..+-. ..+...
T Consensus 405 RvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~ 483 (672)
T PRK12678 405 RVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSD 483 (672)
T ss_pred eeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHH
Confidence 34444441 23457889999999999999999987643 2334433 44455433 233333222000000 111111
Q ss_pred ---hHHHHHHHHHHHH-cCCcEEEEEeCCCC
Q 044755 240 ---GSRRASRLYERLK-KEEKILIILDNIWK 266 (1079)
Q Consensus 240 ---~~~~~~~l~~~l~-~~~~~LlvlDdv~~ 266 (1079)
....+..+-+++. +++.+||++|++-.
T Consensus 484 ~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 484 HTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 1122333444443 58999999999854
No 445
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.63 E-value=0.11 Score=51.62 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
...|.++|++|+||||+|+.+++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998864
No 446
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.56 E-value=0.076 Score=29.49 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=7.9
Q ss_pred CCccEEEEecCCCceeec
Q 044755 1033 PALKLLKVSDCDQVTVFD 1050 (1079)
Q Consensus 1033 ~sL~~L~i~~C~~L~~lp 1050 (1079)
++|++|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 356666666666 66554
No 447
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.55 E-value=0.3 Score=45.54 Aligned_cols=105 Identities=16% Similarity=0.287 Sum_probs=61.1
Q ss_pred CcchhccCCcceEEEecCccccccCc-cccccccccEEeccccccCC--cccccCCcccceeeccCCcCcccChh-hccC
Q 044755 546 PCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIVMLPEE-LGHL 621 (1079)
Q Consensus 546 ~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L 621 (1079)
+...|.++.+|+.+.+.. .+..++. .+..+.+|+.+.+..+ +.. -..+..+.+|+.+.+.. .+..++.. +..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 556688899999999885 5677754 4778888999988775 555 25567777888888865 55555543 5568
Q ss_pred CcccEEcccccccccccChhhhhcccccceeeccc
Q 044755 622 TKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 656 (1079)
Q Consensus 622 ~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 656 (1079)
.+|+.+.+.. .+..++...+.+. +|+.+.+..
T Consensus 81 ~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 81 TNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 8888888865 3566666667776 777777654
No 448
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.53 E-value=0.31 Score=55.01 Aligned_cols=89 Identities=13% Similarity=0.259 Sum_probs=53.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCC-------ccccchHH----
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGLV-------LEEETGSR---- 242 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 242 (1079)
.-..++|+|..|+|||||++.+..... .+..+++.+++ ...+.+.+++....-... ..+++..+
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 346899999999999999999886543 45556665554 344555555543211110 00111111
Q ss_pred --HHHHHHHHHH-cCCcEEEEEeCCCCc
Q 044755 243 --RASRLYERLK-KEEKILIILDNIWKC 267 (1079)
Q Consensus 243 --~~~~l~~~l~-~~~~~LlvlDdv~~~ 267 (1079)
.+..+.+++. +++++|+++||+-..
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHHHH
Confidence 1233445553 479999999999653
No 449
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.52 E-value=0.13 Score=48.50 Aligned_cols=47 Identities=32% Similarity=0.508 Sum_probs=33.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLV 234 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1079)
.+++.|+|.+|+||||+.+.+.... ++. .. .+.-++.-+++...+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~~--~i---------vNyG~~Mle~A~k~glv 50 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VKH--KI---------VNYGDLMLEIAKKKGLV 50 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hhc--ee---------eeHhHHHHHHHHHhCCc
Confidence 5799999999999999999887766 111 11 14456666777776654
No 450
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.51 E-value=0.41 Score=54.05 Aligned_cols=88 Identities=18% Similarity=0.331 Sum_probs=51.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCcc-------ccchHH------
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLE-------EETGSR------ 242 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~~------ 242 (1079)
-..++|+|..|+|||||++.+....+. ...++.....+...+.++.++.+..-+.... +++...
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 458999999999999999988865431 2223333333344566666655544332111 111111
Q ss_pred HHHHHHHHHH-cCCcEEEEEeCCCC
Q 044755 243 RASRLYERLK-KEEKILIILDNIWK 266 (1079)
Q Consensus 243 ~~~~l~~~l~-~~~~~LlvlDdv~~ 266 (1079)
.+..+.+++. +++++|+++||+-.
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 2233445553 47999999999855
No 451
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.51 E-value=0.14 Score=52.58 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=27.4
Q ss_pred HhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 170 ALTDVNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 170 ~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.+.+.++++|+++|..|+|||||..++.+...
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34467899999999999999999999988753
No 452
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.50 E-value=0.099 Score=50.23 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
+|.|+|..|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 453
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=92.48 E-value=0.19 Score=58.54 Aligned_cols=57 Identities=23% Similarity=0.301 Sum_probs=42.7
Q ss_pred cccccHHHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeC
Q 044755 155 EAFESRLCALKSVQNALTD-----VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVS 215 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 215 (1079)
.++.-..+-++++.+||.+ ...+++.+.|++|+||||.++.++++.. |+.+=|.+-.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np~ 80 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINPV 80 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCCC
Confidence 3344445667888888862 2357899999999999999999998864 7777786543
No 454
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.42 E-value=0.5 Score=47.90 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
++++|+|+.|.|||||.+.+.-..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999987544
No 455
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=92.42 E-value=0.58 Score=53.49 Aligned_cols=88 Identities=15% Similarity=0.246 Sum_probs=55.9
Q ss_pred ceEEEEEcCCCCcHHHHH-HHHHHHhhhcCCCCE-EEEEEeCCcc-CHHHHHHHHHHHhCCCc-------cccchHH---
Q 044755 176 VSIVGVYGMGGIGKTTLV-KEVARQAREDKLFDL-VVFSEVSQTL-DIKKIQQEIAEKLGLVL-------EEETGSR--- 242 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~--- 242 (1079)
-..++|.|..|+|||||| .++.+... -+. ++++-+++.. .+.++.+++...-.... .+++...
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~q~~----~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ 237 (497)
T TIGR03324 162 GQRELILGDRQTGKTAIAIDTILNQKG----RNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYI 237 (497)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHHhcC----CCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHH
Confidence 457899999999999996 57777642 454 6888887764 45666666655432211 1111111
Q ss_pred ---HHHHHHHHHH-cCCcEEEEEeCCCCc
Q 044755 243 ---RASRLYERLK-KEEKILIILDNIWKC 267 (1079)
Q Consensus 243 ---~~~~l~~~l~-~~~~~LlvlDdv~~~ 267 (1079)
....+-++++ +++++|||+||+-..
T Consensus 238 ap~~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 238 APYAATSIGEHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcChhHH
Confidence 1233444553 589999999998653
No 456
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.42 E-value=0.56 Score=48.93 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=42.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc--cCHHHHHHHHHHH----hCCCc--cccchHHHHHHHHH
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT--LDIKKIQQEIAEK----LGLVL--EEETGSRRASRLYE 249 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~----l~~~~--~~~~~~~~~~~l~~ 249 (1079)
+|+|.|..|.||||+|+.+.+..+... ..+..++...- .+-...-+.+..+ .+... ++..+.+.....++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999999988765322 12344443322 2222222222222 22333 34445555666666
Q ss_pred HHHcCC
Q 044755 250 RLKKEE 255 (1079)
Q Consensus 250 ~l~~~~ 255 (1079)
.+++++
T Consensus 79 ~L~~g~ 84 (277)
T cd02029 79 TYGETG 84 (277)
T ss_pred HHHcCC
Confidence 666543
No 457
>PRK06217 hypothetical protein; Validated
Probab=92.42 E-value=0.1 Score=52.25 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCC--CEEEEE
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAREDKLF--DLVVFS 212 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv 212 (1079)
.|.|.|.+|.||||+|+++.+.... .+| |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeec
Confidence 5899999999999999999988643 223 445553
No 458
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.40 E-value=0.093 Score=53.46 Aligned_cols=23 Identities=43% Similarity=0.705 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
+|+|.|..|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 459
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=92.39 E-value=0.33 Score=53.59 Aligned_cols=57 Identities=14% Similarity=0.046 Sum_probs=35.5
Q ss_pred ccHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC
Q 044755 158 ESRLCALKSVQNALT--DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ 216 (1079)
Q Consensus 158 ~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 216 (1079)
+|+...+.++.+.+. .....-|.|+|..|+||+++|+.+++..... -...+-|+++.
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~--~~pfv~vnc~~ 60 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRW--QGPLVKLNCAA 60 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCcc--CCCeEEEeCCC
Confidence 344445555555444 1223467899999999999999998764311 12335566654
No 460
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.35 E-value=0.13 Score=63.27 Aligned_cols=182 Identities=18% Similarity=0.163 Sum_probs=86.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh-hhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCc------cc-cchHHHHHH
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQA-REDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVL------EE-ETGSRRASR 246 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~-~~~~~~~~~ 246 (1079)
+..++.|+|+.|.||||+.+.+.-.. .... ..+|++.....+ ..+..+...++... .. .........
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~----G~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQS----GIPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHh----CCCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 44799999999999999999987552 1111 112222110000 00111111110000 00 001111222
Q ss_pred HHHHHHcCCcEEEEEeCCCCcccc---ccc----cCCCCCCCCCcEEEEEecChhhhhhcCCC-ce--EeCCCCCHHHHH
Q 044755 247 LYERLKKEEKILIILDNIWKCVDL---EAV----GIPFGDDHKGCKLLLTARDRNVLFRMGSQ-KN--FSIDILNEEEAW 316 (1079)
Q Consensus 247 l~~~l~~~~~~LlvlDdv~~~~~~---~~l----~~~l~~~~~gs~iivTtR~~~v~~~~~~~-~~--~~l~~L~~~~~~ 316 (1079)
+...+ ..+-|+++|..-...+. ..+ ...+. ..|+.+|+||...+........ .+ ..+. ++. +..
T Consensus 396 il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l 469 (771)
T TIGR01069 396 ILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETL 469 (771)
T ss_pred HHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCC
Confidence 22222 47899999998764221 112 11221 2578999999998775432111 11 1110 110 100
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHhcCChhHHHHHHHHh
Q 044755 317 RLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQEL 372 (1079)
Q Consensus 317 ~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~l 372 (1079)
-|..+.....+. ..-|-.|++++ |+|-.+.--|..+......+...++..|
T Consensus 470 -~p~Ykl~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L 520 (771)
T TIGR01069 470 -SPTYKLLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKL 520 (771)
T ss_pred -ceEEEECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 011111111111 23477788777 7898888888877665445566665554
No 461
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=92.34 E-value=0.29 Score=58.40 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=43.0
Q ss_pred ccccccHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc
Q 044755 154 YEAFESRLCALKSVQNALT--DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT 217 (1079)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 217 (1079)
...++|....++++.+.+. .....-|.|+|..|+|||++|+.+++..... -...+.|++...
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~--~~pfv~i~c~~~ 258 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRA--KRPFVKVNCAAL 258 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEeecCCC
Confidence 3467888888888877765 2233456799999999999999999865311 123455666543
No 462
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.33 E-value=0.13 Score=46.74 Aligned_cols=23 Identities=48% Similarity=0.629 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 044755 179 VGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
|-+.|.+|+||||+|+.++....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~ 24 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG 24 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT
T ss_pred EeeECCCccHHHHHHHHHHHHcC
Confidence 57899999999999999998865
No 463
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.30 E-value=0.42 Score=53.98 Aligned_cols=87 Identities=23% Similarity=0.434 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCc-------cccchHH-----
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT-LDIKKIQQEIAEKLGLVL-------EEETGSR----- 242 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~----- 242 (1079)
-..++|+|..|+|||||++.+..... .+..+.+.+... ..+.++.++....-.... .+++...
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 45799999999999999998886543 344555555543 345555555443322111 1111111
Q ss_pred -HHHHHHHHHH-cCCcEEEEEeCCCC
Q 044755 243 -RASRLYERLK-KEEKILIILDNIWK 266 (1079)
Q Consensus 243 -~~~~l~~~l~-~~~~~LlvlDdv~~ 266 (1079)
.+..+.+++. +++++|+++||+-.
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 1233444453 47999999999854
No 464
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=92.27 E-value=0.23 Score=54.83 Aligned_cols=60 Identities=10% Similarity=0.048 Sum_probs=40.2
Q ss_pred ccccHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc
Q 044755 156 AFESRLCALKSVQNALT--DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT 217 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 217 (1079)
.++|+...+.++.+.+. .....-|.|+|..|+||+++|+.++..... .-...+.|++...
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~ 68 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAAL 68 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCC
Confidence 46677777777766665 223356789999999999999999864321 1123456666653
No 465
>PRK13949 shikimate kinase; Provisional
Probab=92.25 E-value=0.12 Score=50.88 Aligned_cols=24 Identities=42% Similarity=0.445 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
-|.|+|+.|+||||+++.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998864
No 466
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.21 E-value=0.7 Score=44.98 Aligned_cols=117 Identities=20% Similarity=0.126 Sum_probs=61.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEE--EEEEeCCccCHHHHHHHHH---HHhCC--CccccchH---HH--
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLV--VFSEVSQTLDIKKIQQEIA---EKLGL--VLEEETGS---RR-- 243 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~--~wv~~~~~~~~~~~~~~i~---~~l~~--~~~~~~~~---~~-- 243 (1079)
...|-|++..|.||||.|...+-..... .+... =|+...........++... .+.+. .+...... ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~-g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGH-GKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 3688899999999999999888776532 23221 1333332333334443320 00011 01111111 11
Q ss_pred --HHHHHHHHHcCCcEEEEEeCCCCcc-----ccccccCCCCCCCCCcEEEEEecCh
Q 044755 244 --ASRLYERLKKEEKILIILDNIWKCV-----DLEAVGIPFGDDHKGCKLLLTARDR 293 (1079)
Q Consensus 244 --~~~l~~~l~~~~~~LlvlDdv~~~~-----~~~~l~~~l~~~~~gs~iivTtR~~ 293 (1079)
.....+.+..+.-=|||||.+-... +.+.+...+.....+.-||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2223333444555699999986432 2234433444445567899999976
No 467
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.21 E-value=0.24 Score=53.85 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHH
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQ 224 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 224 (1079)
+++.+.|-||+||||+|.+.+-....+. ..+.-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHh
Confidence 6889999999999999988877665432 235556665555544444
No 468
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.20 E-value=0.13 Score=51.48 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.++.|+|+.|+||||+++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 469
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=92.20 E-value=0.43 Score=54.37 Aligned_cols=89 Identities=18% Similarity=0.293 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCC------Cc-cccchH------
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGL------VL-EEETGS------ 241 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~------~~-~~~~~~------ 241 (1079)
.-..++|+|..|+|||||++.+...... -..++++.-.+..++.++.++.+..-+. .. .+++..
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~ 233 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNTSA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGA 233 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHH
Confidence 4568999999999999999988876532 1234444433444555554442221111 00 111111
Q ss_pred HHHHHHHHHHH-cCCcEEEEEeCCCC
Q 044755 242 RRASRLYERLK-KEEKILIILDNIWK 266 (1079)
Q Consensus 242 ~~~~~l~~~l~-~~~~~LlvlDdv~~ 266 (1079)
..+..+.+++. +++++|+++||+-.
T Consensus 234 ~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 234 YTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 12233444553 58999999999855
No 470
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.20 E-value=0.13 Score=51.23 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
++|.+.|++|+||||+|+.+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999987753
No 471
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.19 E-value=0.19 Score=49.15 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 044755 179 VGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
|.|.|.+|+|||||++.+.+..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 67999999999999999998875
No 472
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.17 E-value=0.11 Score=50.18 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
++.++|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998763
No 473
>PLN02924 thymidylate kinase
Probab=92.16 E-value=0.84 Score=47.02 Aligned_cols=53 Identities=9% Similarity=0.085 Sum_probs=35.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
...|+|-|..|+||||+|+.+++..... .+....+-.........+.+++++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCceeeeCCCCCChHHHHHHHHHh
Confidence 4689999999999999999999998743 3444433222223334555555554
No 474
>PRK14529 adenylate kinase; Provisional
Probab=92.14 E-value=0.51 Score=48.41 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=44.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCE-EE-EEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCc
Q 044755 179 VGVYGMGGIGKTTLVKEVARQAREDKLFDL-VV-FSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEK 256 (1079)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~-wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1079)
|.|.|++|+||||+|+.++...... +.+. .+ .-.+..........++++.+-.. -+++.....+.+++.+...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G~l----vpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRGDL----VPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhccCc----chHHHHHHHHHHHHhccCC
Confidence 7889999999999999999887532 2221 11 11122222333344444433221 1223334455566653223
Q ss_pred EEEEEeCCCC
Q 044755 257 ILIILDNIWK 266 (1079)
Q Consensus 257 ~LlvlDdv~~ 266 (1079)
-=+|||+.-.
T Consensus 78 ~g~iLDGfPR 87 (223)
T PRK14529 78 NGWLLDGFPR 87 (223)
T ss_pred CcEEEeCCCC
Confidence 4478888744
No 475
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.13 E-value=0.12 Score=51.39 Aligned_cols=24 Identities=46% Similarity=0.751 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
+|+|.|..|+||||||+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998865
No 476
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.13 E-value=0.21 Score=54.67 Aligned_cols=48 Identities=23% Similarity=0.244 Sum_probs=38.0
Q ss_pred CccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 153 GYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
+...++|.++.++.+.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 344678999988887765554555668999999999999999997765
No 477
>PRK13947 shikimate kinase; Provisional
Probab=92.12 E-value=0.12 Score=51.09 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
-|.|+|++|+||||+|+.+++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998864
No 478
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=0.3 Score=50.95 Aligned_cols=28 Identities=32% Similarity=0.370 Sum_probs=24.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQARED 203 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (1079)
+..+.|||++|.|||-+|+.|+....+.
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 5689999999999999999999887643
No 479
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.08 E-value=0.13 Score=47.15 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 044755 179 VGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999987653
No 480
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=92.07 E-value=0.044 Score=49.68 Aligned_cols=84 Identities=14% Similarity=0.287 Sum_probs=42.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEE
Q 044755 180 GVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILI 259 (1079)
Q Consensus 180 ~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~Ll 259 (1079)
.|.|.+|+|||+|+..+..+ +|....-.+.+-.+.+..+--. .........+....++-..+...+-++..-++
T Consensus 12 lIigDsgVGKssLl~rF~dd-----tFs~sYitTiGvDfkirTv~i~-G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 12 LIIGDSGVGKSSLLLRFADD-----TFSGSYITTIGVDFKIRTVDIN-GDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HeecCCcccHHHHHHHHhhc-----ccccceEEEeeeeEEEEEeecC-CcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 47899999999999998876 3543322222211111000000 00001111112233444444455555777788
Q ss_pred EEeCCCCccc
Q 044755 260 ILDNIWKCVD 269 (1079)
Q Consensus 260 vlDdv~~~~~ 269 (1079)
|+=||-+.+.
T Consensus 86 vVYDVTn~ES 95 (198)
T KOG0079|consen 86 VVYDVTNGES 95 (198)
T ss_pred EEEECcchhh
Confidence 8778876543
No 481
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.06 E-value=0.39 Score=54.21 Aligned_cols=88 Identities=20% Similarity=0.405 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCc-------cccchH-----
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGLVL-------EEETGS----- 241 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~----- 241 (1079)
.-..++|+|..|+|||||++.+..... -+..+..-+.+ .....+...+.+.+-+... .+++..
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~----~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~ 211 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNAK----ADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKA 211 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 446899999999999999998886543 23333333443 3345555555444322210 011111
Q ss_pred -HHHHHHHHHHH-cCCcEEEEEeCCCC
Q 044755 242 -RRASRLYERLK-KEEKILIILDNIWK 266 (1079)
Q Consensus 242 -~~~~~l~~~l~-~~~~~LlvlDdv~~ 266 (1079)
..+..+.+++. +++++|+++||+-.
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 212 AFTATAIAEYFRDQGKDVLLMMDSVTR 238 (413)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCcHH
Confidence 11233444553 58999999999855
No 482
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=92.04 E-value=0.21 Score=54.28 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT 217 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 217 (1079)
+.++|+|+|-||+||||.+..+..-.... .+ .++-|+....
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~-g~-kVLliD~D~q 43 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEM-GQ-KILIVGCDPK 43 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHC-CC-eEEEEecccc
Confidence 34788889999999999998877665532 23 3555555443
No 483
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=92.02 E-value=0.24 Score=53.57 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=37.0
Q ss_pred ccccccHHHHHHH---HHHHhcCCC--ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCC
Q 044755 154 YEAFESRLCALKS---VQNALTDVN--VSIVGVYGMGGIGKTTLVKEVARQAREDKLF 206 (1079)
Q Consensus 154 ~~~~~gr~~~~~~---l~~~l~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 206 (1079)
..+++|..+..+. +++++.+.+ -+.|-+.|++|.|||+||..+++....+-.|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 3578897665544 566666543 5899999999999999999999998754333
No 484
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.01 E-value=0.39 Score=57.61 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=52.0
Q ss_pred ccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 044755 154 YEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1079)
...++|+++.++.+..++.... -+.++|++|+||||+|+.+.+..... .|...+++.-+. .+...+++.++.+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n~~-~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPNPE-DPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeCCC-CCchHHHHHHHHhhch
Confidence 3457788888887777766553 55599999999999999999877532 344444444333 3455567777766654
No 485
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.99 E-value=0.21 Score=50.15 Aligned_cols=39 Identities=26% Similarity=0.294 Sum_probs=30.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ 216 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 216 (1079)
.+++.|+|+.|+|||||++.+..+.. ..|...++.+-..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~TTR~ 40 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHTTRP 40 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEESS-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeecccC
Confidence 47899999999999999999999875 4576566655543
No 486
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=91.98 E-value=0.38 Score=54.11 Aligned_cols=41 Identities=24% Similarity=0.269 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044755 162 CALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQARE 202 (1079)
Q Consensus 162 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (1079)
...+.+++.+.......+.|.|.||+|||++.+.+.+..+.
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 34556666666666678999999999999999999988764
No 487
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.93 E-value=0.1 Score=28.97 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=8.0
Q ss_pred cceEEEecCccccccC
Q 044755 555 KLRVVDFTRMQLLLLP 570 (1079)
Q Consensus 555 ~Lr~L~L~~~~i~~lp 570 (1079)
+|++|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666777777666655
No 488
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=91.93 E-value=0.44 Score=51.48 Aligned_cols=63 Identities=17% Similarity=0.164 Sum_probs=43.2
Q ss_pred ccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHH
Q 044755 156 AFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQ 225 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 225 (1079)
.|+=..+....++.++... +.|.|.|.+|+||||+|+.++...... .+.|.++...+..+++.
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~DliG 108 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDLVG 108 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhcCC
Confidence 4444444556677777543 469999999999999999999987521 34666666655555544
No 489
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=91.91 E-value=0.56 Score=52.87 Aligned_cols=46 Identities=26% Similarity=0.138 Sum_probs=34.6
Q ss_pred ccccHHHHHHHHHHHhc-------C-------C----CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 156 AFESRLCALKSVQNALT-------D-------V----NVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~-------~-------~----~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.++|.++.++.+..++. . + ....+.++|++|+|||++|+.++....
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 35788888887766551 1 1 125789999999999999999997654
No 490
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=91.90 E-value=0.52 Score=53.28 Aligned_cols=89 Identities=18% Similarity=0.366 Sum_probs=49.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCc-------cccc------h
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGLVL-------EEET------G 240 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~------~ 240 (1079)
+-..++|+|..|+|||||++.+..... .+..+..-+.. ..+..++..+.+.+-+... .+.. .
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a 229 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKA 229 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHH
Confidence 346899999999999999999887543 23333333332 2234444434443332211 1111 1
Q ss_pred HHHHHHHHHHHH-cCCcEEEEEeCCCCc
Q 044755 241 SRRASRLYERLK-KEEKILIILDNIWKC 267 (1079)
Q Consensus 241 ~~~~~~l~~~l~-~~~~~LlvlDdv~~~ 267 (1079)
.+.+..+.+.+. +++++|+++||+-..
T Consensus 230 ~e~a~~iAEyfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 230 TELCHAIATYYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred HHHHHHHHHHhhhccCCEEEeecchhHH
Confidence 111222333332 479999999998553
No 491
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=91.88 E-value=0.63 Score=52.62 Aligned_cols=90 Identities=18% Similarity=0.304 Sum_probs=54.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCcc-------ccchH------
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLE-------EETGS------ 241 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~------ 241 (1079)
.-..++|+|..|+|||||++.++...+. ...++...-.+...+.+.++..+..-+.... +.+..
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 3458899999999999999999876542 1233333333446677777666555332210 11111
Q ss_pred HHHHHHHHHHH-cCCcEEEEEeCCCCc
Q 044755 242 RRASRLYERLK-KEEKILIILDNIWKC 267 (1079)
Q Consensus 242 ~~~~~l~~~l~-~~~~~LlvlDdv~~~ 267 (1079)
..+..+.+++. ++++.||++||+-..
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 11233344443 479999999998664
No 492
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=91.87 E-value=0.25 Score=47.75 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEE
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFS 212 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (1079)
|++|+|+.|+|||||+.++....+.+ .+...+.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 58999999999999999999987633 35444433
No 493
>COG4240 Predicted kinase [General function prediction only]
Probab=91.84 E-value=1 Score=44.82 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=51.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCC-----ccccchHHHHHHH
Q 044755 173 DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLV-----LEEETGSRRASRL 247 (1079)
Q Consensus 173 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~l 247 (1079)
.++.-+++|.|+-|.||||++..+++....+.. ..++..+..+-+-...-...++++.+.- .++..+......+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 345679999999999999999999998875543 4666666655444444555566654221 1222333344445
Q ss_pred HHHHHcCC
Q 044755 248 YERLKKEE 255 (1079)
Q Consensus 248 ~~~l~~~~ 255 (1079)
.+.+.+++
T Consensus 126 Lnai~~g~ 133 (300)
T COG4240 126 LNAIARGG 133 (300)
T ss_pred HHHHhcCC
Confidence 55555544
No 494
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=91.82 E-value=0.39 Score=50.35 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
+..|.|++|+||||++..+....
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 78999999999998777776665
No 495
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.82 E-value=0.17 Score=51.09 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
..+|.|.|.+|+||||+|+.++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 496
>PRK14530 adenylate kinase; Provisional
Probab=91.82 E-value=0.15 Score=52.74 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
+.|.|+|++|+||||+|+.+++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987763
No 497
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.78 E-value=0.014 Score=57.56 Aligned_cols=84 Identities=11% Similarity=0.079 Sum_probs=68.6
Q ss_pred hccCCcceEEEecCccccccCccccccccccEEeccccccCC-cccccCCcccceeeccCCcCcccChhhccCCcccEEc
Q 044755 550 FTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLD 628 (1079)
Q Consensus 550 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 628 (1079)
+..++..++||++.|.+..+-..++.++.|.-|+++.+.+.. |++++.+..++.+++..|..+.+|.++++++++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 356777888888888888887778888888888888888777 7888888888888888888888888888888888888
Q ss_pred ccccc
Q 044755 629 LSNCF 633 (1079)
Q Consensus 629 l~~~~ 633 (1079)
+.++.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 87753
No 498
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=91.78 E-value=0.17 Score=48.56 Aligned_cols=29 Identities=31% Similarity=0.604 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDK 204 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 204 (1079)
.+|++|+|+.|.|||||+.++....+.+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 47999999999999999999999887543
No 499
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=91.76 E-value=0.39 Score=59.25 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=42.0
Q ss_pred cccccHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc
Q 044755 155 EAFESRLCALKSVQNALT--DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT 217 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 217 (1079)
..++|+...+.++.+.+. .....-|.|+|..|+|||++|+.+++..... -...+.+++...
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~ 438 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAM 438 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccC
Confidence 357788777777765554 2233578899999999999999998765311 234566666643
No 500
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=91.75 E-value=0.44 Score=53.08 Aligned_cols=76 Identities=24% Similarity=0.293 Sum_probs=48.4
Q ss_pred ccccHHHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCCEEEEEEeC-CccC
Q 044755 156 AFESRLCALKSVQNALTD--------------VNVSIVGVYGMGGIGKTTLVKEVARQARED-KLFDLVVFSEVS-QTLD 219 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~-~~~~ 219 (1079)
.++|.++.++.+..++.. -..+.|.++|+.|+|||++|+.+....... -+++..-|...+ ...+
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 367888888887777632 013678999999999999999999886421 012332232221 2235
Q ss_pred HHHHHHHHHHHh
Q 044755 220 IKKIQQEIAEKL 231 (1079)
Q Consensus 220 ~~~~~~~i~~~l 231 (1079)
...+++.+....
T Consensus 96 ~e~~ir~L~~~A 107 (443)
T PRK05201 96 VESIIRDLVEIA 107 (443)
T ss_pred HHHHHHHHHHHH
Confidence 666776666554
Done!