Query 044755
Match_columns 1079
No_of_seqs 531 out of 4858
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 11:04:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044755.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044755hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 9.9E-46 3.4E-50 439.1 17.2 308 157-485 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 4.2E-37 1.4E-41 364.5 17.5 280 157-477 130-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 4.9E-35 1.7E-39 388.1 27.1 312 150-484 119-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 7.9E-32 2.7E-36 325.8 26.5 306 151-481 120-449 (591)
5 3vq2_A TLR4, TOLL-like recepto 100.0 7.1E-30 2.4E-34 310.8 33.6 495 488-1045 16-557 (606)
6 3rgz_A Protein brassinosteroid 100.0 3.8E-30 1.3E-34 320.0 28.9 503 506-1069 179-761 (768)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-29 7.4E-34 306.5 31.9 479 508-1056 14-543 (606)
8 3t6q_A CD180 antigen; protein- 100.0 1.7E-28 5.7E-33 298.7 32.9 504 490-1045 19-559 (606)
9 3t6q_A CD180 antigen; protein- 100.0 5.6E-28 1.9E-32 294.1 33.7 478 508-1050 15-539 (606)
10 3rgz_A Protein brassinosteroid 100.0 3.5E-28 1.2E-32 302.3 30.4 486 504-1052 150-723 (768)
11 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-27 3.9E-32 295.4 34.4 512 490-1045 11-621 (680)
12 1ziw_A TOLL-like receptor 3; i 100.0 1.9E-27 6.6E-32 293.4 36.4 500 508-1052 7-602 (680)
13 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-27 5.6E-32 299.5 33.1 492 488-1045 9-559 (844)
14 2z63_A TOLL-like receptor 4, v 100.0 3.1E-27 1.1E-31 285.5 33.5 459 490-1045 14-530 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 4.4E-27 1.5E-31 282.6 29.7 473 505-1050 26-514 (549)
16 2z63_A TOLL-like receptor 4, v 100.0 1.4E-26 4.8E-31 279.8 31.9 447 508-1052 10-512 (570)
17 4ecn_A Leucine-rich repeat pro 99.9 7.6E-26 2.6E-30 278.1 29.4 104 918-1044 727-838 (876)
18 3j0a_A TOLL-like receptor 5; m 99.9 2.7E-25 9.4E-30 279.3 33.1 479 508-1049 7-541 (844)
19 4eco_A Uncharacterized protein 99.9 1.5E-25 5E-30 272.0 27.6 237 565-838 194-468 (636)
20 2z81_A CD282 antigen, TOLL-lik 99.9 8.5E-25 2.9E-29 262.7 31.3 431 503-1022 48-512 (549)
21 2z7x_B TOLL-like receptor 1, v 99.9 3.9E-25 1.3E-29 263.5 26.7 445 508-1045 3-480 (520)
22 4ecn_A Leucine-rich repeat pro 99.9 5.2E-25 1.8E-29 270.7 27.3 423 527-1047 323-873 (876)
23 4eco_A Uncharacterized protein 99.9 2.7E-25 9.2E-30 269.7 23.8 418 527-1046 81-600 (636)
24 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-24 3.7E-29 259.7 23.8 424 530-1052 3-462 (520)
25 4g8a_A TOLL-like receptor 4; l 99.9 1.5E-23 5.2E-28 257.0 32.4 494 490-1044 38-578 (635)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-23 4.1E-28 252.7 26.2 448 507-1045 33-509 (562)
27 1o6v_A Internalin A; bacterial 99.9 5.7E-23 1.9E-27 240.5 28.9 319 526-984 45-363 (466)
28 1o6v_A Internalin A; bacterial 99.9 5.8E-23 2E-27 240.4 27.3 342 504-985 45-386 (466)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3E-23 1E-27 249.2 25.1 434 525-1052 29-491 (562)
30 4g8a_A TOLL-like receptor 4; l 99.9 2.3E-22 7.7E-27 246.6 31.8 471 513-1050 39-558 (635)
31 1jl5_A Outer protein YOPM; leu 99.9 3.9E-23 1.3E-27 239.2 21.5 52 919-985 317-368 (454)
32 3v47_A TOLL-like receptor 5B a 99.9 1E-22 3.4E-27 238.4 24.5 378 513-985 18-406 (455)
33 3v47_A TOLL-like receptor 5B a 99.9 1.3E-22 4.5E-27 237.4 25.0 367 554-1044 30-406 (455)
34 3bz5_A Internalin-J, INLJ; leu 99.9 6.2E-22 2.1E-26 229.3 24.3 335 550-1027 60-394 (457)
35 4fmz_A Internalin; leucine ric 99.9 5.1E-22 1.7E-26 223.2 22.9 125 525-658 42-166 (347)
36 1jl5_A Outer protein YOPM; leu 99.9 3.9E-22 1.3E-26 230.8 20.3 382 525-1056 9-421 (454)
37 3o6n_A APL1; leucine-rich repe 99.9 1.2E-21 4.1E-26 223.8 23.1 134 523-660 41-178 (390)
38 3bz5_A Internalin-J, INLJ; leu 99.9 2.2E-21 7.6E-26 224.7 24.0 284 504-878 41-324 (457)
39 3oja_B Anopheles plasmodium-re 99.9 4.9E-21 1.7E-25 231.0 23.3 153 523-693 47-203 (597)
40 3o6n_A APL1; leucine-rich repe 99.9 6.4E-21 2.2E-25 217.8 22.4 134 552-697 43-180 (390)
41 2id5_A Lingo-1, leucine rich r 99.9 1.1E-20 3.6E-25 222.4 24.8 314 530-959 14-331 (477)
42 4fmz_A Internalin; leucine ric 99.9 3.1E-20 1.1E-24 208.5 26.9 303 503-872 42-344 (347)
43 3oja_B Anopheles plasmodium-re 99.8 3.1E-20 1.1E-24 224.0 22.0 135 552-698 49-187 (597)
44 2id5_A Lingo-1, leucine rich r 99.8 1.1E-19 3.7E-24 213.8 25.2 313 509-872 15-331 (477)
45 3ogk_B Coronatine-insensitive 99.8 4.4E-21 1.5E-25 232.7 6.4 433 525-1042 71-547 (592)
46 4fcg_A Uncharacterized protein 99.8 5.7E-19 2E-23 195.4 18.7 221 552-835 79-309 (328)
47 1xku_A Decorin; proteoglycan, 99.8 6.4E-18 2.2E-22 188.0 24.2 290 528-871 32-329 (330)
48 2ft3_A Biglycan; proteoglycan, 99.8 3E-18 1E-22 190.8 20.1 290 528-872 34-331 (332)
49 3ogk_B Coronatine-insensitive 99.8 4.3E-20 1.5E-24 224.0 4.4 387 525-989 110-527 (592)
50 1xku_A Decorin; proteoglycan, 99.8 1.6E-17 5.6E-22 184.7 23.0 125 553-694 30-157 (330)
51 1ogq_A PGIP-2, polygalacturona 99.8 4E-18 1.4E-22 187.5 15.9 174 505-694 50-233 (313)
52 2p1m_B Transport inhibitor res 99.8 2.5E-19 8.4E-24 217.4 5.6 129 526-657 104-245 (594)
53 4fcg_A Uncharacterized protein 99.7 7.5E-18 2.6E-22 186.4 16.1 171 505-692 81-263 (328)
54 1z7x_W Ribonuclease inhibitor; 99.7 8.2E-20 2.8E-24 214.0 -0.1 372 527-985 3-409 (461)
55 2p1m_B Transport inhibitor res 99.7 2E-19 6.8E-24 218.2 2.0 435 525-1042 64-540 (594)
56 1ogq_A PGIP-2, polygalacturona 99.7 1.1E-17 3.8E-22 184.0 13.9 151 527-694 50-209 (313)
57 2ft3_A Biglycan; proteoglycan, 99.7 7.4E-17 2.5E-21 179.5 20.1 289 505-838 33-331 (332)
58 3g06_A SSPH2 (leucine-rich rep 99.7 1.4E-16 4.7E-21 189.7 22.4 92 555-658 41-132 (622)
59 2z80_A TOLL-like receptor 2, v 99.7 3.1E-17 1.1E-21 184.2 14.7 175 510-699 36-215 (353)
60 2z66_A Variable lymphocyte rec 99.7 1.1E-16 3.8E-21 175.9 16.8 174 509-697 11-190 (306)
61 3zyi_A Leucine-rich repeat-con 99.7 2.5E-16 8.6E-21 183.2 19.5 173 508-697 57-233 (452)
62 3zyj_A Leucine-rich repeat-con 99.7 2.5E-16 8.5E-21 182.5 19.3 173 508-697 46-222 (440)
63 3g06_A SSPH2 (leucine-rich rep 99.7 9.5E-16 3.3E-20 182.5 24.6 256 506-839 41-296 (622)
64 1z7x_W Ribonuclease inhibitor; 99.7 4.9E-18 1.7E-22 198.9 2.4 398 554-1045 3-439 (461)
65 1ozn_A Reticulon 4 receptor; N 99.7 1.2E-15 3.9E-20 165.8 17.2 174 508-697 14-192 (285)
66 2z80_A TOLL-like receptor 2, v 99.6 1.6E-15 5.4E-20 170.3 17.6 262 493-785 41-312 (353)
67 3zyi_A Leucine-rich repeat-con 99.6 2.7E-15 9.2E-20 174.5 19.9 239 530-810 57-299 (452)
68 2z66_A Variable lymphocyte rec 99.6 2E-15 6.7E-20 165.9 16.9 195 491-699 15-216 (306)
69 1ozn_A Reticulon 4 receptor; N 99.6 4E-15 1.4E-19 161.5 17.8 195 490-700 18-219 (285)
70 3zyj_A Leucine-rich repeat-con 99.6 3.5E-15 1.2E-19 172.9 18.5 234 490-755 50-290 (440)
71 2o6q_A Variable lymphocyte rec 99.6 8E-15 2.7E-19 157.5 17.1 178 506-699 17-198 (270)
72 1p9a_G Platelet glycoprotein I 99.6 6.5E-15 2.2E-19 159.5 16.5 180 504-700 9-190 (290)
73 1wwl_A Monocyte differentiatio 99.6 4E-16 1.4E-20 171.6 5.7 153 526-695 42-214 (312)
74 3o53_A Protein LRIM1, AGAP0063 99.6 8.5E-16 2.9E-20 169.4 8.1 245 526-843 33-278 (317)
75 1h6u_A Internalin H; cell adhe 99.6 1.2E-14 4.1E-19 159.2 16.3 146 504-659 40-185 (308)
76 2z62_A TOLL-like receptor 4, v 99.6 1.2E-14 4.2E-19 156.8 16.1 141 515-660 17-162 (276)
77 1h6u_A Internalin H; cell adhe 99.6 1.1E-14 3.8E-19 159.5 14.4 152 524-698 38-189 (308)
78 3o53_A Protein LRIM1, AGAP0063 99.6 2.2E-15 7.5E-20 166.1 8.6 212 504-755 33-248 (317)
79 2z62_A TOLL-like receptor 4, v 99.6 2.9E-14 1E-18 153.8 16.9 181 503-699 26-217 (276)
80 2qen_A Walker-type ATPase; unk 99.6 2.2E-13 7.4E-18 152.9 24.3 290 151-478 8-349 (350)
81 3oja_A Leucine-rich immune mol 99.6 2.4E-15 8.3E-20 175.6 8.5 149 526-695 33-182 (487)
82 2o6q_A Variable lymphocyte rec 99.6 4.9E-14 1.7E-18 151.3 17.3 189 491-695 24-218 (270)
83 1p9a_G Platelet glycoprotein I 99.6 3.1E-14 1.1E-18 154.2 15.6 175 525-729 8-183 (290)
84 2xwt_C Thyrotropin receptor; s 99.6 1.9E-14 6.6E-19 151.5 13.5 150 504-657 30-189 (239)
85 3rfs_A Internalin B, repeat mo 99.5 2.2E-14 7.5E-19 154.2 14.0 129 524-659 38-169 (272)
86 2xwt_C Thyrotropin receptor; s 99.5 1.5E-14 5.2E-19 152.3 12.2 138 517-660 23-169 (239)
87 1h6t_A Internalin B; cell adhe 99.5 5.2E-14 1.8E-18 152.6 16.1 172 504-698 45-216 (291)
88 3m19_A Variable lymphocyte rec 99.5 6.4E-14 2.2E-18 148.6 15.3 176 506-697 15-194 (251)
89 3rfs_A Internalin B, repeat mo 99.5 7.7E-14 2.6E-18 149.9 15.2 175 503-694 39-217 (272)
90 2fna_A Conserved hypothetical 99.5 5.5E-13 1.9E-17 150.0 22.8 288 153-477 11-356 (357)
91 3oja_A Leucine-rich immune mol 99.5 5.2E-14 1.8E-18 164.4 14.2 211 504-755 33-248 (487)
92 1wwl_A Monocyte differentiatio 99.5 1.6E-14 5.4E-19 158.8 9.2 199 525-755 93-307 (312)
93 1w5s_A Origin recognition comp 99.5 1E-12 3.4E-17 151.0 21.5 301 155-473 22-387 (412)
94 2ast_B S-phase kinase-associat 99.5 2.8E-14 9.7E-19 159.1 8.1 129 554-692 70-205 (336)
95 1m9s_A Internalin B; cell inva 99.5 2E-13 6.8E-18 162.4 14.1 174 503-699 41-214 (605)
96 2ast_B S-phase kinase-associat 99.5 4.8E-14 1.6E-18 157.2 8.1 174 555-755 48-233 (336)
97 4ay9_X Follicle-stimulating ho 99.5 1.1E-12 3.6E-17 146.7 18.3 102 557-660 12-117 (350)
98 1h6t_A Internalin B; cell adhe 99.4 4.1E-13 1.4E-17 145.5 14.1 160 516-698 35-194 (291)
99 2v70_A SLIT-2, SLIT homolog 2 99.4 5.4E-13 1.9E-17 137.9 13.7 149 508-660 14-166 (220)
100 3e6j_A Variable lymphocyte rec 99.4 7.6E-13 2.6E-17 137.8 14.7 150 506-660 20-172 (229)
101 4glp_A Monocyte differentiatio 99.4 9.9E-14 3.4E-18 152.3 8.2 227 524-785 61-305 (310)
102 3m19_A Variable lymphocyte rec 99.4 8.1E-13 2.8E-17 140.1 14.8 153 528-698 15-171 (251)
103 4ezg_A Putative uncharacterize 99.4 6.8E-13 2.3E-17 134.8 13.1 147 504-659 43-193 (197)
104 4ezg_A Putative uncharacterize 99.4 5E-13 1.7E-17 135.7 10.4 148 525-693 42-192 (197)
105 2v9t_B SLIT homolog 2 protein 99.4 1.1E-12 3.9E-17 135.5 13.2 148 508-660 14-165 (220)
106 2o6s_A Variable lymphocyte rec 99.4 6.4E-13 2.2E-17 136.4 10.8 147 508-659 10-160 (208)
107 4glp_A Monocyte differentiatio 99.4 8.4E-13 2.9E-17 144.9 12.3 224 555-811 65-304 (310)
108 1m9s_A Internalin B; cell inva 99.4 1.1E-12 3.6E-17 156.2 13.5 184 511-731 27-210 (605)
109 4ay9_X Follicle-stimulating ho 99.4 2.1E-12 7E-17 144.4 15.1 57 741-810 199-255 (350)
110 1xeu_A Internalin C; cellular 99.4 5.7E-13 2E-17 141.9 9.9 170 505-698 19-188 (263)
111 2ca6_A RAN GTPase-activating p 99.4 2.7E-13 9.3E-18 154.1 6.2 139 549-695 27-200 (386)
112 3qfl_A MLA10; coiled-coil, (CC 99.3 1.9E-12 6.4E-17 116.0 8.7 79 8-93 2-81 (115)
113 2ell_A Acidic leucine-rich nuc 99.3 2.5E-12 8.5E-17 126.9 10.6 138 553-699 23-164 (168)
114 3cvr_A Invasion plasmid antige 99.3 7.7E-12 2.6E-16 146.9 14.2 183 506-731 60-243 (571)
115 2v9t_B SLIT homolog 2 protein 99.3 6.1E-12 2.1E-16 130.0 11.7 128 554-693 32-163 (220)
116 2ca6_A RAN GTPase-activating p 99.3 4.5E-13 1.5E-17 152.3 3.0 238 525-785 30-314 (386)
117 1xeu_A Internalin C; cellular 99.3 1.1E-11 3.7E-16 132.0 12.8 147 503-660 39-185 (263)
118 2xot_A Amphoterin-induced prot 99.3 1.2E-11 4.1E-16 138.7 13.8 148 508-660 21-176 (361)
119 3goz_A Leucine-rich repeat-con 99.3 2E-12 6.9E-17 145.2 7.2 143 548-698 16-183 (362)
120 2xot_A Amphoterin-induced prot 99.3 8.1E-12 2.8E-16 140.1 11.6 136 555-699 40-180 (361)
121 3e6j_A Variable lymphocyte rec 99.3 1.5E-11 5E-16 128.1 12.3 105 554-660 40-148 (229)
122 2ell_A Acidic leucine-rich nuc 99.3 8.7E-12 3E-16 123.0 9.6 128 527-659 24-159 (168)
123 4b8c_D Glucose-repressible alc 99.3 7.1E-12 2.4E-16 153.2 10.5 152 505-660 173-329 (727)
124 2je0_A Acidic leucine-rich nuc 99.3 8.5E-12 2.9E-16 120.3 8.8 102 551-654 39-147 (149)
125 2v70_A SLIT-2, SLIT homolog 2 99.3 1.8E-11 6.1E-16 126.4 11.8 148 530-695 14-166 (220)
126 2o6s_A Variable lymphocyte rec 99.2 1.7E-11 5.9E-16 125.7 10.8 147 503-660 26-178 (208)
127 2je0_A Acidic leucine-rich nuc 99.2 6.8E-12 2.3E-16 121.0 7.2 128 552-689 15-147 (149)
128 3goz_A Leucine-rich repeat-con 99.2 6.9E-12 2.4E-16 140.8 8.2 83 550-632 46-148 (362)
129 2qby_B CDC6 homolog 3, cell di 99.2 5.7E-10 1.9E-14 126.6 24.1 283 155-460 20-338 (384)
130 1a9n_A U2A', U2A'; complex (nu 99.2 2.3E-11 8E-16 120.8 9.3 107 551-659 16-125 (176)
131 1a9n_A U2A', U2A'; complex (nu 99.2 1.2E-11 4.1E-16 122.9 7.0 132 522-659 14-152 (176)
132 3cvr_A Invasion plasmid antige 99.2 1.1E-10 3.6E-15 137.2 15.2 159 504-696 79-244 (571)
133 2qby_A CDC6 homolog 1, cell di 99.2 3.2E-10 1.1E-14 128.9 18.4 286 155-460 20-347 (386)
134 2v1u_A Cell division control p 99.2 1.5E-09 5.1E-14 123.3 23.8 286 155-460 19-350 (387)
135 1w8a_A SLIT protein; signaling 99.2 7.6E-11 2.6E-15 118.8 10.6 104 555-659 30-138 (192)
136 2wfh_A SLIT homolog 2 protein 99.2 1.1E-10 3.9E-15 117.4 11.6 106 554-660 31-139 (193)
137 1fnn_A CDC6P, cell division co 99.2 2.5E-09 8.5E-14 121.5 24.2 305 155-481 17-384 (389)
138 2wfh_A SLIT homolog 2 protein 99.1 1.2E-10 4E-15 117.4 10.2 124 557-694 13-138 (193)
139 1w8a_A SLIT protein; signaling 99.1 1.9E-10 6.4E-15 116.0 11.3 123 508-633 11-137 (192)
140 1njg_A DNA polymerase III subu 99.1 6.6E-10 2.3E-14 117.3 16.3 199 151-357 19-231 (250)
141 4b8c_D Glucose-repressible alc 99.1 4E-11 1.4E-15 146.5 6.8 130 525-659 222-353 (727)
142 1dce_A Protein (RAB geranylger 99.1 1.7E-10 6E-15 136.3 10.8 105 529-639 443-549 (567)
143 1ds9_A Outer arm dynein; leuci 99.1 1E-11 3.5E-16 126.1 0.1 109 549-660 43-153 (198)
144 2chg_A Replication factor C sm 99.1 1.3E-09 4.4E-14 113.2 15.9 189 151-355 13-205 (226)
145 1dce_A Protein (RAB geranylger 99.0 5.9E-10 2E-14 131.8 11.9 123 555-688 442-566 (567)
146 2r9u_A Variable lymphocyte rec 99.0 6.8E-10 2.3E-14 109.6 9.5 101 557-660 15-118 (174)
147 2o6r_A Variable lymphocyte rec 99.0 9.9E-10 3.4E-14 109.1 10.3 105 554-659 28-136 (177)
148 2o6r_A Variable lymphocyte rec 99.0 1.9E-09 6.5E-14 107.1 12.1 125 508-637 10-138 (177)
149 3g39_A Variable lymphocyte rec 99.0 8.3E-10 2.8E-14 108.6 9.3 102 556-660 11-115 (170)
150 1ds9_A Outer arm dynein; leuci 99.0 4E-11 1.4E-15 121.7 -2.1 140 508-653 26-180 (198)
151 1sxj_B Activator 1 37 kDa subu 98.9 8.2E-09 2.8E-13 113.9 12.7 191 151-356 17-212 (323)
152 3te6_A Regulatory protein SIR3 98.7 1.7E-07 5.9E-12 100.2 17.0 166 157-323 22-211 (318)
153 2r9u_A Variable lymphocyte rec 98.7 3.1E-08 1.1E-12 97.5 9.9 104 530-640 15-122 (174)
154 3sb4_A Hypothetical leucine ri 98.7 8.8E-08 3E-12 105.6 14.1 291 525-867 23-327 (329)
155 1hqc_A RUVB; extended AAA-ATPa 98.7 3.9E-08 1.3E-12 108.4 10.6 175 153-357 10-214 (324)
156 1iqp_A RFCS; clamp loader, ext 98.7 6.1E-08 2.1E-12 107.0 11.0 191 151-357 21-215 (327)
157 3sb4_A Hypothetical leucine ri 98.7 3.4E-08 1.2E-12 109.0 8.7 57 526-586 100-157 (329)
158 3g39_A Variable lymphocyte rec 98.6 7.6E-08 2.6E-12 94.4 9.7 83 554-637 30-116 (170)
159 2ifg_A High affinity nerve gro 98.6 7.3E-08 2.5E-12 107.3 8.4 98 559-659 13-115 (347)
160 2chq_A Replication factor C sm 98.5 5.5E-07 1.9E-11 98.8 13.7 186 151-354 13-204 (319)
161 3un9_A NLR family member X1; l 98.5 3.3E-08 1.1E-12 110.3 3.0 133 554-694 101-251 (372)
162 4fdw_A Leucine rich hypothetic 98.5 7.3E-06 2.5E-10 92.2 21.5 122 526-657 112-236 (401)
163 1jr3_A DNA polymerase III subu 98.5 1.1E-06 3.8E-11 98.8 14.7 194 153-354 14-221 (373)
164 2ifg_A High affinity nerve gro 98.4 4.3E-07 1.5E-11 101.0 8.9 100 532-636 13-116 (347)
165 1jbk_A CLPB protein; beta barr 98.4 1.3E-06 4.4E-11 87.8 10.7 153 153-319 20-194 (195)
166 3un9_A NLR family member X1; l 98.3 8.7E-08 3E-12 106.9 0.5 136 553-696 71-225 (372)
167 3h4m_A Proteasome-activating n 98.3 6.4E-06 2.2E-10 88.5 14.2 177 153-351 15-228 (285)
168 2qz4_A Paraplegin; AAA+, SPG7, 98.2 2.9E-05 9.9E-10 82.2 18.2 174 155-348 6-215 (262)
169 4fdw_A Leucine rich hypothetic 98.2 1.1E-05 3.7E-10 90.9 15.3 204 546-783 172-379 (401)
170 3bos_A Putative DNA replicatio 98.2 1E-06 3.5E-11 92.3 5.3 173 153-353 26-216 (242)
171 3e4g_A ATP synthase subunit S, 98.2 7.4E-07 2.5E-11 85.8 3.8 67 919-990 61-130 (176)
172 1d2n_A N-ethylmaleimide-sensit 98.2 3.1E-05 1.1E-09 82.4 16.8 176 173-373 61-262 (272)
173 1sxj_A Activator 1 95 kDa subu 98.2 1.3E-05 4.4E-10 93.6 14.5 193 151-356 35-255 (516)
174 4fs7_A Uncharacterized protein 98.1 8.8E-05 3E-09 83.7 20.7 60 546-607 63-125 (394)
175 3pvs_A Replication-associated 98.1 3.1E-05 1.1E-09 87.8 16.8 178 151-353 22-214 (447)
176 1sxj_D Activator 1 41 kDa subu 98.1 6.4E-06 2.2E-10 91.7 10.7 197 151-353 33-234 (353)
177 2ra8_A Uncharacterized protein 98.1 3.1E-06 1.1E-10 93.4 7.7 136 548-693 166-318 (362)
178 3e4g_A ATP synthase subunit S, 98.1 1.5E-06 5E-11 83.7 3.0 94 948-1048 61-154 (176)
179 3d8b_A Fidgetin-like protein 1 98.0 8.8E-05 3E-09 82.1 17.6 181 153-354 82-295 (357)
180 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.00021 7.3E-09 77.6 20.1 181 153-353 10-222 (322)
181 3u61_B DNA polymerase accessor 98.0 2.8E-05 9.5E-10 85.2 13.2 183 151-355 22-218 (324)
182 3pfi_A Holliday junction ATP-d 98.0 8.9E-05 3E-09 81.7 17.2 172 152-353 26-226 (338)
183 3syl_A Protein CBBX; photosynt 98.0 1.9E-05 6.5E-10 86.0 11.5 147 157-323 33-217 (309)
184 3eie_A Vacuolar protein sortin 98.0 0.00011 3.8E-09 80.0 17.3 180 152-352 15-226 (322)
185 4fs7_A Uncharacterized protein 98.0 0.00023 7.9E-09 80.2 20.3 125 524-656 68-217 (394)
186 2z4s_A Chromosomal replication 98.0 4.3E-05 1.5E-09 87.0 14.1 171 163-351 116-303 (440)
187 1sxj_E Activator 1 40 kDa subu 98.0 2.1E-05 7.3E-10 87.5 11.3 196 151-353 10-236 (354)
188 1sxj_C Activator 1 40 kDa subu 98.0 4.7E-05 1.6E-09 83.9 13.3 182 151-349 21-207 (340)
189 3vfd_A Spastin; ATPase, microt 97.9 0.00028 9.7E-09 79.1 18.5 182 151-353 111-325 (389)
190 3b9p_A CG5977-PA, isoform A; A 97.9 0.00056 1.9E-08 73.7 20.1 180 153-353 19-232 (297)
191 1a5t_A Delta prime, HOLB; zinc 97.9 0.00016 5.6E-09 79.1 16.0 169 160-352 7-203 (334)
192 2zan_A Vacuolar protein sortin 97.9 0.00038 1.3E-08 79.2 18.9 181 153-353 132-344 (444)
193 2p65_A Hypothetical protein PF 97.8 3.8E-05 1.3E-09 76.3 9.2 49 153-201 20-68 (187)
194 2qp9_X Vacuolar protein sortin 97.8 0.00021 7E-09 78.9 15.9 180 153-353 49-260 (355)
195 4b4t_J 26S protease regulatory 97.8 0.00058 2E-08 74.8 18.1 173 153-347 146-354 (405)
196 3uk6_A RUVB-like 2; hexameric 97.8 0.00015 5E-09 81.1 13.8 194 154-352 43-301 (368)
197 1l8q_A Chromosomal replication 97.8 0.00015 5E-09 79.4 12.9 165 163-348 22-202 (324)
198 3cf0_A Transitional endoplasmi 97.7 0.00058 2E-08 73.5 17.2 174 154-349 14-223 (301)
199 3pxg_A Negative regulator of g 97.7 0.00018 6.1E-09 82.6 12.6 149 153-323 178-338 (468)
200 4b4t_H 26S protease regulatory 97.7 0.00077 2.6E-08 74.8 16.9 172 154-347 208-415 (467)
201 4b4t_L 26S protease subunit RP 97.7 0.00086 3E-08 74.7 17.5 173 153-347 179-387 (437)
202 1io0_A Tropomodulin; LRR prote 97.7 2E-05 6.7E-10 78.2 3.5 110 549-659 31-163 (185)
203 4b4t_I 26S protease regulatory 97.6 0.0011 3.7E-08 72.8 17.3 174 152-347 179-388 (437)
204 1qvr_A CLPB protein; coiled co 97.6 0.00012 4.1E-09 91.0 11.1 157 152-323 167-345 (854)
205 4b4t_M 26S protease regulatory 97.6 0.00041 1.4E-08 77.3 13.8 175 151-347 177-387 (434)
206 3ec2_A DNA replication protein 97.5 7E-05 2.4E-09 73.9 5.4 117 160-293 19-143 (180)
207 3rw6_A Nuclear RNA export fact 97.5 8.9E-05 3E-09 77.2 6.0 60 552-611 168-232 (267)
208 1r6b_X CLPA protein; AAA+, N-t 97.4 0.0017 5.8E-08 79.9 17.3 156 153-323 184-362 (758)
209 4b4t_K 26S protease regulatory 97.4 0.0029 1E-07 70.4 17.2 173 153-347 170-379 (428)
210 2ra8_A Uncharacterized protein 97.4 0.00011 3.8E-09 80.9 5.7 129 525-660 170-320 (362)
211 3rw6_A Nuclear RNA export fact 97.4 5.7E-05 2E-09 78.6 3.1 94 559-653 148-257 (267)
212 3n70_A Transport activator; si 97.4 5E-05 1.7E-09 71.8 2.3 45 156-200 2-48 (145)
213 3hu3_A Transitional endoplasmi 97.3 0.00098 3.3E-08 76.3 12.3 176 154-351 203-412 (489)
214 3pxi_A Negative regulator of g 97.3 0.0026 8.8E-08 78.1 16.9 149 153-323 178-338 (758)
215 2gno_A DNA polymerase III, gam 97.3 0.00074 2.5E-08 72.3 10.2 145 160-323 2-152 (305)
216 2ce7_A Cell division protein F 97.3 0.0018 6.3E-08 73.3 13.7 172 154-347 15-221 (476)
217 1io0_A Tropomodulin; LRR prote 97.3 0.00018 6.1E-09 71.2 4.7 117 570-694 29-163 (185)
218 1in4_A RUVB, holliday junction 97.2 0.0064 2.2E-07 66.3 17.0 172 152-352 22-221 (334)
219 1ofh_A ATP-dependent HSL prote 97.2 0.0022 7.5E-08 69.4 12.8 46 156-201 16-75 (310)
220 4fcw_A Chaperone protein CLPB; 97.1 0.00076 2.6E-08 73.2 7.9 104 157-267 19-131 (311)
221 2w58_A DNAI, primosome compone 97.1 0.0015 5.1E-08 65.6 9.5 116 160-293 34-159 (202)
222 1lv7_A FTSH; alpha/beta domain 97.1 0.0074 2.5E-07 63.1 15.2 176 153-350 10-221 (257)
223 4gt6_A Cell surface protein; l 97.1 0.057 1.9E-06 60.4 23.4 120 528-656 65-191 (394)
224 4gt6_A Cell surface protein; l 97.0 0.028 9.5E-07 63.0 19.9 143 507-656 66-214 (394)
225 3m6a_A ATP-dependent protease 96.9 0.0051 1.8E-07 71.7 13.4 150 157-323 83-266 (543)
226 2r62_A Cell division protease 96.9 0.00041 1.4E-08 73.4 3.4 128 177-324 45-197 (268)
227 2bjv_A PSP operon transcriptio 96.9 0.00072 2.5E-08 71.4 5.0 60 156-217 7-68 (265)
228 2kjq_A DNAA-related protein; s 96.8 0.00071 2.4E-08 63.9 3.7 46 169-216 29-74 (149)
229 3co5_A Putative two-component 96.8 0.00018 6.1E-09 67.7 -0.6 45 156-200 5-51 (143)
230 3t15_A Ribulose bisphosphate c 96.7 0.014 4.6E-07 62.3 13.9 26 176-201 36-61 (293)
231 3pxi_A Negative regulator of g 96.7 0.0017 5.7E-08 79.8 7.5 147 156-323 492-675 (758)
232 1ixz_A ATP-dependent metallopr 96.7 0.028 9.5E-07 58.5 15.9 147 179-347 52-221 (254)
233 2c9o_A RUVB-like 1; hexameric 96.7 0.011 3.8E-07 67.5 13.8 47 155-201 37-88 (456)
234 2x8a_A Nuclear valosin-contain 96.6 0.029 9.8E-07 59.0 15.0 149 155-323 10-191 (274)
235 3cf2_A TER ATPase, transitiona 96.6 0.0047 1.6E-07 74.2 9.7 151 176-348 238-408 (806)
236 1ojl_A Transcriptional regulat 96.5 0.0014 4.9E-08 70.3 4.5 59 156-216 3-63 (304)
237 1iy2_A ATP-dependent metallopr 96.5 0.012 4E-07 62.4 11.1 173 153-347 38-245 (278)
238 3io5_A Recombination and repai 96.3 0.024 8.2E-07 59.5 11.7 85 178-267 30-123 (333)
239 2dhr_A FTSH; AAA+ protein, hex 96.2 0.015 5.1E-07 66.3 10.7 173 153-347 29-236 (499)
240 1n0w_A DNA repair protein RAD5 96.1 0.031 1.1E-06 57.7 11.7 90 176-266 24-130 (243)
241 2r44_A Uncharacterized protein 96.1 0.006 2E-07 66.6 6.4 149 156-324 28-199 (331)
242 2vhj_A Ntpase P4, P4; non- hyd 96.1 0.0074 2.5E-07 63.7 6.5 68 177-266 124-193 (331)
243 1r6b_X CLPA protein; AAA+, N-t 96.0 0.01 3.5E-07 72.9 8.4 102 156-267 459-569 (758)
244 3hr8_A Protein RECA; alpha and 95.9 0.029 9.9E-07 60.8 10.6 85 176-267 61-151 (356)
245 4h09_A Hypothetical leucine ri 95.9 0.26 8.8E-06 54.6 18.9 120 525-655 44-166 (379)
246 1v5w_A DMC1, meiotic recombina 95.7 0.05 1.7E-06 59.3 11.7 59 175-234 121-183 (343)
247 2z43_A DNA repair and recombin 95.7 0.04 1.4E-06 59.6 10.9 90 176-266 107-214 (324)
248 2cvh_A DNA repair and recombin 95.6 0.034 1.2E-06 56.3 9.4 44 176-224 20-63 (220)
249 1ypw_A Transitional endoplasmi 95.5 0.026 9E-07 69.0 9.5 171 154-347 203-407 (806)
250 3lw7_A Adenylate kinase relate 95.4 0.023 7.7E-07 55.3 6.9 20 177-196 2-21 (179)
251 2i1q_A DNA repair and recombin 95.4 0.052 1.8E-06 58.7 10.4 58 176-234 98-169 (322)
252 3lda_A DNA repair protein RAD5 95.4 0.059 2E-06 59.6 10.7 90 176-266 178-284 (400)
253 1xp8_A RECA protein, recombina 95.3 0.067 2.3E-06 58.4 10.6 84 176-266 74-163 (366)
254 1qvr_A CLPB protein; coiled co 95.2 0.016 5.5E-07 71.9 6.3 59 156-216 559-626 (854)
255 1u94_A RECA protein, recombina 95.2 0.069 2.4E-06 58.1 10.5 84 176-266 63-152 (356)
256 1jr3_D DNA polymerase III, del 95.2 0.11 3.6E-06 56.9 12.2 157 174-352 16-183 (343)
257 2zr9_A Protein RECA, recombina 95.2 0.06 2.1E-06 58.6 9.9 84 176-266 61-150 (349)
258 2px0_A Flagellar biosynthesis 95.2 0.072 2.5E-06 56.5 10.2 86 175-263 104-190 (296)
259 2qgz_A Helicase loader, putati 95.0 0.034 1.2E-06 59.5 7.3 54 160-215 133-190 (308)
260 3dm5_A SRP54, signal recogniti 94.9 0.13 4.6E-06 57.1 11.7 28 175-202 99-126 (443)
261 1sky_E F1-ATPase, F1-ATP synth 94.8 0.078 2.7E-06 59.2 9.5 89 177-266 152-256 (473)
262 1fx0_B ATP synthase beta chain 94.8 0.091 3.1E-06 58.7 10.0 99 167-266 155-277 (498)
263 4a74_A DNA repair and recombin 94.7 0.17 5.8E-06 51.5 11.5 57 176-233 25-85 (231)
264 2w0m_A SSO2452; RECA, SSPF, un 94.7 0.11 3.8E-06 52.9 10.1 47 176-226 23-69 (235)
265 3ice_A Transcription terminati 94.7 0.06 2E-06 58.0 7.8 97 165-266 162-272 (422)
266 1rz3_A Hypothetical protein rb 94.6 0.037 1.3E-06 55.2 6.0 43 159-201 2-47 (201)
267 2ck3_D ATP synthase subunit be 94.6 0.16 5.5E-06 56.5 11.4 100 166-266 142-264 (482)
268 2xxa_A Signal recognition part 94.6 0.33 1.1E-05 54.3 14.1 58 175-233 99-157 (433)
269 1pzn_A RAD51, DNA repair and r 94.2 0.15 5.2E-06 55.5 10.1 57 175-232 130-190 (349)
270 3cf2_A TER ATPase, transitiona 94.2 0.029 9.9E-07 67.5 4.5 169 156-346 478-682 (806)
271 3c8u_A Fructokinase; YP_612366 94.0 0.056 1.9E-06 54.1 5.7 52 162-215 6-59 (208)
272 3kl4_A SRP54, signal recogniti 94.0 0.25 8.6E-06 54.9 11.4 58 175-234 96-154 (433)
273 2j37_W Signal recognition part 93.8 0.51 1.7E-05 53.7 13.6 58 175-234 100-158 (504)
274 4h09_A Hypothetical leucine ri 93.7 0.19 6.5E-06 55.7 10.0 124 525-656 215-342 (379)
275 2hf9_A Probable hydrogenase ni 93.7 0.063 2.2E-06 54.6 5.6 40 162-201 24-63 (226)
276 1qhx_A CPT, protein (chloramph 93.6 0.039 1.3E-06 53.7 3.7 25 177-201 4-28 (178)
277 3bh0_A DNAB-like replicative h 93.6 0.38 1.3E-05 51.5 11.8 51 176-230 68-118 (315)
278 3kb2_A SPBC2 prophage-derived 93.6 0.042 1.4E-06 53.1 3.8 25 177-201 2-26 (173)
279 4akg_A Glutathione S-transfera 93.5 0.55 1.9E-05 64.2 15.3 137 177-323 1268-1431(2695)
280 2ehv_A Hypothetical protein PH 93.4 0.21 7.3E-06 51.5 9.3 39 176-216 30-69 (251)
281 3tqc_A Pantothenate kinase; bi 93.4 0.32 1.1E-05 51.8 10.4 27 175-201 91-117 (321)
282 1vma_A Cell division protein F 93.3 0.38 1.3E-05 51.0 10.9 57 175-234 103-161 (306)
283 3vaa_A Shikimate kinase, SK; s 93.3 0.049 1.7E-06 54.1 3.8 26 176-201 25-50 (199)
284 3trf_A Shikimate kinase, SK; a 93.1 0.057 1.9E-06 52.9 3.8 26 176-201 5-30 (185)
285 2ga8_A Hypothetical 39.9 kDa p 93.0 0.12 4.2E-06 55.3 6.5 41 161-201 5-49 (359)
286 2wsm_A Hydrogenase expression/ 93.0 0.074 2.5E-06 53.8 4.7 41 161-201 15-55 (221)
287 2dr3_A UPF0273 protein PH0284; 93.0 0.27 9.2E-06 50.6 9.1 46 176-225 23-68 (247)
288 1ly1_A Polynucleotide kinase; 92.9 0.059 2E-06 52.5 3.7 22 177-198 3-24 (181)
289 3l0o_A Transcription terminati 92.9 0.063 2.2E-06 57.7 4.0 52 165-217 163-216 (427)
290 3rfe_A Platelet glycoprotein I 92.8 0.1 3.4E-06 47.5 4.8 54 603-659 12-67 (130)
291 1zp6_A Hypothetical protein AT 92.8 0.065 2.2E-06 52.8 3.8 24 176-199 9-32 (191)
292 1kgd_A CASK, peripheral plasma 92.7 0.065 2.2E-06 52.2 3.7 24 177-200 6-29 (180)
293 2c61_A A-type ATP synthase non 92.7 0.14 4.9E-06 56.9 6.7 100 167-266 142-260 (469)
294 3uie_A Adenylyl-sulfate kinase 92.7 0.081 2.8E-06 52.6 4.4 29 173-201 22-50 (200)
295 3e70_C DPA, signal recognition 92.7 1.1 3.7E-05 48.0 13.5 58 174-233 127-185 (328)
296 1kag_A SKI, shikimate kinase I 92.7 0.055 1.9E-06 52.3 3.1 25 177-201 5-29 (173)
297 3fwy_A Light-independent proto 92.7 0.063 2.1E-06 57.4 3.8 41 174-216 46-86 (314)
298 1nks_A Adenylate kinase; therm 92.7 0.072 2.5E-06 52.5 4.0 25 177-201 2-26 (194)
299 1j8m_F SRP54, signal recogniti 92.6 0.4 1.4E-05 50.6 9.9 87 176-264 98-189 (297)
300 4eun_A Thermoresistant glucoki 92.6 0.073 2.5E-06 52.9 4.0 27 174-200 27-53 (200)
301 3rfe_A Platelet glycoprotein I 92.6 0.14 4.9E-06 46.5 5.5 50 558-609 12-65 (130)
302 1g8p_A Magnesium-chelatase 38 92.5 0.057 1.9E-06 59.3 3.3 49 153-201 22-70 (350)
303 3vr4_D V-type sodium ATPase su 92.5 0.24 8.2E-06 54.7 8.1 98 167-266 141-259 (465)
304 3t61_A Gluconokinase; PSI-biol 92.5 0.061 2.1E-06 53.6 3.2 25 176-200 18-42 (202)
305 2rhm_A Putative kinase; P-loop 92.4 0.088 3E-06 51.9 4.3 26 176-201 5-30 (193)
306 3cmu_A Protein RECA, recombina 92.4 0.21 7.3E-06 65.6 8.8 84 175-265 1426-1515(2050)
307 1xjc_A MOBB protein homolog; s 92.4 0.097 3.3E-06 49.9 4.2 27 175-201 3-29 (169)
308 1ls1_A Signal recognition part 92.4 0.51 1.7E-05 49.9 10.3 87 176-264 98-189 (295)
309 3iij_A Coilin-interacting nucl 92.3 0.069 2.4E-06 52.0 3.3 26 176-201 11-36 (180)
310 2yvu_A Probable adenylyl-sulfa 92.3 0.095 3.3E-06 51.3 4.3 28 175-202 12-39 (186)
311 1kht_A Adenylate kinase; phosp 92.3 0.083 2.8E-06 52.0 3.9 25 177-201 4-28 (192)
312 1odf_A YGR205W, hypothetical 3 92.3 0.17 5.7E-06 53.4 6.3 55 174-228 29-84 (290)
313 2ze6_A Isopentenyl transferase 92.2 0.086 2.9E-06 54.6 4.0 25 177-201 2-26 (253)
314 1via_A Shikimate kinase; struc 92.2 0.072 2.5E-06 51.6 3.2 25 177-201 5-29 (175)
315 1knq_A Gluconate kinase; ALFA/ 92.2 0.091 3.1E-06 50.8 3.9 25 176-200 8-32 (175)
316 1zuh_A Shikimate kinase; alpha 92.2 0.09 3.1E-06 50.5 3.8 27 175-201 6-32 (168)
317 2ffh_A Protein (FFH); SRP54, s 92.1 0.52 1.8E-05 52.3 10.3 56 176-234 98-155 (425)
318 3aez_A Pantothenate kinase; tr 92.1 0.27 9.1E-06 52.5 7.7 43 174-216 88-130 (312)
319 1g5t_A COB(I)alamin adenosyltr 92.0 0.21 7E-06 48.6 6.1 111 177-293 29-163 (196)
320 2jaq_A Deoxyguanosine kinase; 91.9 0.095 3.2E-06 52.2 3.8 24 178-201 2-25 (205)
321 2qor_A Guanylate kinase; phosp 91.9 0.086 2.9E-06 52.6 3.4 26 175-200 11-36 (204)
322 2bdt_A BH3686; alpha-beta prot 91.9 0.096 3.3E-06 51.5 3.8 22 177-198 3-24 (189)
323 1y63_A LMAJ004144AAA protein; 91.8 0.1 3.4E-06 51.1 3.7 24 176-199 10-33 (184)
324 3tau_A Guanylate kinase, GMP k 91.8 0.1 3.5E-06 52.2 3.8 27 175-201 7-33 (208)
325 2iyv_A Shikimate kinase, SK; t 91.7 0.082 2.8E-06 51.7 3.0 25 177-201 3-27 (184)
326 1ukz_A Uridylate kinase; trans 91.7 0.12 4.2E-06 51.4 4.3 26 175-200 14-39 (203)
327 2c95_A Adenylate kinase 1; tra 91.7 0.11 3.7E-06 51.4 3.9 26 176-201 9-34 (196)
328 1tev_A UMP-CMP kinase; ploop, 91.7 0.11 3.9E-06 51.2 4.0 25 176-200 3-27 (196)
329 3hws_A ATP-dependent CLP prote 91.7 0.14 4.9E-06 56.3 5.2 45 157-201 17-76 (363)
330 3umf_A Adenylate kinase; rossm 91.6 0.13 4.3E-06 51.5 4.2 27 175-201 28-54 (217)
331 1uf9_A TT1252 protein; P-loop, 91.6 0.11 3.9E-06 51.5 4.0 26 174-199 6-31 (203)
332 3tr0_A Guanylate kinase, GMP k 91.5 0.1 3.4E-06 52.1 3.5 24 177-200 8-31 (205)
333 1gvn_B Zeta; postsegregational 91.5 0.17 6E-06 53.3 5.4 26 175-200 32-57 (287)
334 3gqb_B V-type ATP synthase bet 91.4 0.27 9.3E-06 54.3 6.9 100 167-266 137-262 (464)
335 3a00_A Guanylate kinase, GMP k 91.4 0.094 3.2E-06 51.4 3.1 25 177-201 2-26 (186)
336 1ye8_A Protein THEP1, hypothet 91.4 0.13 4.4E-06 49.8 4.0 24 178-201 2-25 (178)
337 3cm0_A Adenylate kinase; ATP-b 91.4 0.13 4.4E-06 50.3 4.0 25 177-201 5-29 (186)
338 3a4m_A L-seryl-tRNA(SEC) kinas 91.4 0.12 4.2E-06 53.7 4.1 26 176-201 4-29 (260)
339 2bwj_A Adenylate kinase 5; pho 91.4 0.12 4E-06 51.3 3.8 25 177-201 13-37 (199)
340 2if2_A Dephospho-COA kinase; a 91.4 0.11 3.7E-06 51.8 3.5 22 177-198 2-23 (204)
341 2plr_A DTMP kinase, probable t 91.3 0.13 4.4E-06 51.6 4.1 26 177-202 5-30 (213)
342 1e6c_A Shikimate kinase; phosp 91.3 0.1 3.6E-06 50.3 3.2 25 177-201 3-27 (173)
343 1ex7_A Guanylate kinase; subst 91.3 0.1 3.5E-06 50.7 3.1 25 177-201 2-26 (186)
344 1cke_A CK, MSSA, protein (cyti 91.2 0.12 4.2E-06 52.5 3.8 25 177-201 6-30 (227)
345 3ney_A 55 kDa erythrocyte memb 91.2 0.13 4.3E-06 50.5 3.7 27 175-201 18-44 (197)
346 3nbx_X ATPase RAVA; AAA+ ATPas 91.2 0.11 3.6E-06 59.4 3.6 44 156-201 23-66 (500)
347 2j41_A Guanylate kinase; GMP, 91.1 0.13 4.4E-06 51.3 3.9 25 176-200 6-30 (207)
348 1uj2_A Uridine-cytidine kinase 91.1 0.14 4.7E-06 53.1 4.1 28 174-201 20-47 (252)
349 3asz_A Uridine kinase; cytidin 91.1 0.15 5.1E-06 51.1 4.3 27 175-201 5-31 (211)
350 2cdn_A Adenylate kinase; phosp 91.1 0.13 4.5E-06 51.0 3.8 26 176-201 20-45 (201)
351 2bbw_A Adenylate kinase 4, AK4 91.1 0.13 4.6E-06 53.0 4.0 26 176-201 27-52 (246)
352 1qf9_A UMP/CMP kinase, protein 91.1 0.14 4.8E-06 50.4 4.0 26 176-201 6-31 (194)
353 1um8_A ATP-dependent CLP prote 91.0 0.18 6.1E-06 55.8 5.2 25 176-200 72-96 (376)
354 2pt5_A Shikimate kinase, SK; a 91.0 0.14 4.8E-06 49.0 3.8 24 178-201 2-25 (168)
355 1lvg_A Guanylate kinase, GMP k 90.9 0.11 3.7E-06 51.5 3.0 25 177-201 5-29 (198)
356 3tlx_A Adenylate kinase 2; str 90.8 0.31 1.1E-05 50.0 6.4 27 174-200 27-53 (243)
357 3gmt_A Adenylate kinase; ssgci 90.8 0.79 2.7E-05 45.9 9.1 25 177-201 9-33 (230)
358 2qt1_A Nicotinamide riboside k 90.8 0.15 5.1E-06 50.9 3.9 24 176-199 21-44 (207)
359 2grj_A Dephospho-COA kinase; T 90.7 0.17 5.7E-06 49.7 4.1 26 175-200 11-36 (192)
360 1tue_A Replication protein E1; 90.7 0.2 7E-06 48.8 4.5 38 164-201 45-83 (212)
361 2pbr_A DTMP kinase, thymidylat 90.7 0.15 5.2E-06 50.2 3.9 24 178-201 2-25 (195)
362 2vli_A Antibiotic resistance p 90.7 0.1 3.4E-06 51.0 2.4 26 176-201 5-30 (183)
363 1rj9_A FTSY, signal recognitio 90.6 0.18 6.2E-06 53.5 4.6 28 175-202 101-128 (304)
364 2b8t_A Thymidine kinase; deoxy 90.6 0.11 3.6E-06 52.3 2.6 111 175-294 11-127 (223)
365 4gp7_A Metallophosphoesterase; 90.6 0.13 4.3E-06 49.6 3.0 21 176-196 9-29 (171)
366 1pgv_A TMD-1, tropomodulin TMD 90.5 0.15 5E-06 49.9 3.4 81 551-631 38-135 (197)
367 1jjv_A Dephospho-COA kinase; P 90.5 0.15 5E-06 50.9 3.6 22 177-198 3-24 (206)
368 4a1f_A DNAB helicase, replicat 90.5 0.95 3.2E-05 48.5 10.0 51 176-230 46-96 (338)
369 2wwf_A Thymidilate kinase, put 90.5 0.17 5.7E-06 50.8 4.0 32 176-208 10-41 (212)
370 1aky_A Adenylate kinase; ATP:A 90.5 0.17 5.7E-06 51.1 4.0 26 176-201 4-29 (220)
371 1nn5_A Similar to deoxythymidy 90.4 0.18 6.1E-06 50.6 4.1 32 176-208 9-40 (215)
372 1htw_A HI0065; nucleotide-bind 90.3 0.18 6.1E-06 47.6 3.8 27 174-200 31-57 (158)
373 3fb4_A Adenylate kinase; psych 90.3 0.17 5.9E-06 50.8 3.9 24 178-201 2-25 (216)
374 4e22_A Cytidylate kinase; P-lo 90.2 0.17 5.7E-06 52.4 3.7 27 175-201 26-52 (252)
375 2f1r_A Molybdopterin-guanine d 90.1 0.15 5.2E-06 48.9 3.1 36 177-212 3-38 (171)
376 1znw_A Guanylate kinase, GMP k 90.1 0.16 5.4E-06 50.8 3.4 25 176-200 20-44 (207)
377 3p32_A Probable GTPase RV1496/ 90.1 0.39 1.3E-05 52.4 6.8 38 164-201 65-104 (355)
378 3end_A Light-independent proto 90.1 0.36 1.2E-05 51.6 6.4 43 173-217 38-80 (307)
379 1gtv_A TMK, thymidylate kinase 90.1 0.11 3.6E-06 52.3 2.0 24 178-201 2-25 (214)
380 1zd8_A GTP:AMP phosphotransfer 90.1 0.17 5.9E-06 51.3 3.7 25 176-200 7-31 (227)
381 2p5t_B PEZT; postsegregational 90.0 0.23 7.8E-06 51.4 4.6 27 175-201 31-57 (253)
382 1zak_A Adenylate kinase; ATP:A 90.0 0.17 5.7E-06 51.2 3.5 26 176-201 5-30 (222)
383 2z0h_A DTMP kinase, thymidylat 89.9 0.2 6.7E-06 49.5 3.9 24 178-201 2-25 (197)
384 3dl0_A Adenylate kinase; phosp 89.8 0.19 6.6E-06 50.5 3.7 23 178-200 2-24 (216)
385 1m7g_A Adenylylsulfate kinase; 89.8 0.22 7.4E-06 49.9 4.1 28 174-201 23-50 (211)
386 2jeo_A Uridine-cytidine kinase 89.7 0.21 7.2E-06 51.4 4.1 26 175-200 24-49 (245)
387 1z6g_A Guanylate kinase; struc 89.7 0.16 5.4E-06 51.2 3.0 25 176-200 23-47 (218)
388 3vr4_A V-type sodium ATPase ca 89.7 0.72 2.4E-05 52.3 8.4 96 166-265 221-339 (600)
389 2q6t_A DNAB replication FORK h 89.7 1.5 5E-05 49.6 11.3 51 176-229 200-250 (444)
390 1np6_A Molybdopterin-guanine d 89.7 0.35 1.2E-05 46.5 5.2 26 176-201 6-31 (174)
391 3cmw_A Protein RECA, recombina 89.6 0.71 2.4E-05 60.1 9.5 85 176-267 732-822 (1706)
392 2i3b_A HCR-ntpase, human cance 89.6 0.18 6.3E-06 49.3 3.3 25 177-201 2-26 (189)
393 2zts_A Putative uncharacterize 89.6 0.77 2.6E-05 47.1 8.3 49 176-227 30-78 (251)
394 3nwj_A ATSK2; P loop, shikimat 89.4 0.18 6.3E-06 51.7 3.2 26 176-201 48-73 (250)
395 3mfy_A V-type ATP synthase alp 89.4 0.73 2.5E-05 52.0 8.1 58 166-227 216-275 (588)
396 3r20_A Cytidylate kinase; stru 89.3 0.23 7.9E-06 50.1 3.8 26 176-201 9-34 (233)
397 1s96_A Guanylate kinase, GMP k 89.3 0.2 6.8E-06 50.4 3.4 26 176-201 16-41 (219)
398 2pez_A Bifunctional 3'-phospho 89.3 0.23 7.8E-06 48.2 3.7 26 176-201 5-30 (179)
399 3b9q_A Chloroplast SRP recepto 89.3 0.28 9.6E-06 52.0 4.7 41 176-219 100-140 (302)
400 2v54_A DTMP kinase, thymidylat 89.3 0.21 7.2E-06 49.6 3.5 25 176-200 4-28 (204)
401 3d3q_A TRNA delta(2)-isopenten 89.2 0.23 7.9E-06 53.1 3.9 25 177-201 8-32 (340)
402 1zu4_A FTSY; GTPase, signal re 89.2 0.52 1.8E-05 50.4 6.7 39 175-215 104-142 (320)
403 1yrb_A ATP(GTP)binding protein 89.1 0.28 9.6E-06 51.0 4.5 27 175-201 13-39 (262)
404 3sr0_A Adenylate kinase; phosp 89.1 0.25 8.5E-06 49.0 3.9 24 178-201 2-25 (206)
405 1g41_A Heat shock protein HSLU 89.1 0.23 7.8E-06 55.3 3.9 46 156-201 16-75 (444)
406 2r9v_A ATP synthase subunit al 88.9 0.54 1.8E-05 52.6 6.7 97 166-266 164-278 (515)
407 4eaq_A DTMP kinase, thymidylat 88.9 0.46 1.6E-05 48.1 5.8 28 175-202 25-52 (229)
408 3ake_A Cytidylate kinase; CMP 88.9 0.25 8.7E-06 49.2 3.9 24 178-201 4-27 (208)
409 3be4_A Adenylate kinase; malar 88.8 0.25 8.6E-06 49.7 3.8 25 177-201 6-30 (217)
410 2yhs_A FTSY, cell division pro 88.8 0.55 1.9E-05 52.7 6.8 42 175-219 292-333 (503)
411 2f6r_A COA synthase, bifunctio 88.7 0.26 8.8E-06 51.9 3.9 24 175-198 74-97 (281)
412 2r6a_A DNAB helicase, replicat 88.7 1.4 4.8E-05 49.9 10.3 50 176-228 203-252 (454)
413 1vht_A Dephospho-COA kinase; s 88.7 0.28 9.7E-06 49.3 4.1 23 176-198 4-26 (218)
414 1e4v_A Adenylate kinase; trans 88.7 0.26 9E-06 49.4 3.8 23 178-200 2-24 (214)
415 3crm_A TRNA delta(2)-isopenten 88.7 0.27 9.1E-06 52.2 3.9 24 177-200 6-29 (323)
416 2xb4_A Adenylate kinase; ATP-b 88.7 0.27 9.1E-06 49.7 3.8 23 178-200 2-24 (223)
417 3cmw_A Protein RECA, recombina 88.7 0.85 2.9E-05 59.4 9.2 84 176-266 1431-1520(1706)
418 3vkg_A Dynein heavy chain, cyt 88.6 2.1 7.2E-05 59.2 13.3 89 167-266 1296-1385(3245)
419 3lv8_A DTMP kinase, thymidylat 88.4 0.7 2.4E-05 46.8 6.7 36 176-212 27-62 (236)
420 1ak2_A Adenylate kinase isoenz 88.4 0.31 1.1E-05 49.6 4.1 26 176-201 16-41 (233)
421 3k1j_A LON protease, ATP-depen 88.3 0.26 8.8E-06 58.3 3.9 48 152-201 38-85 (604)
422 2onk_A Molybdate/tungstate ABC 88.2 0.27 9.3E-06 50.2 3.5 24 177-200 25-48 (240)
423 3upu_A ATP-dependent DNA helic 88.1 0.92 3.1E-05 51.5 8.3 44 159-203 29-72 (459)
424 2og2_A Putative signal recogni 88.1 0.37 1.3E-05 52.2 4.6 27 176-202 157-183 (359)
425 2qe7_A ATP synthase subunit al 88.0 0.87 3E-05 50.9 7.6 97 166-266 151-265 (502)
426 4tmk_A Protein (thymidylate ki 87.9 0.84 2.9E-05 45.4 6.8 52 177-229 4-55 (213)
427 1pgv_A TMD-1, tropomodulin TMD 87.9 0.34 1.2E-05 47.3 3.8 107 526-632 40-167 (197)
428 1oix_A RAS-related protein RAB 87.9 0.3 1E-05 48.0 3.5 25 176-200 29-53 (191)
429 1sq5_A Pantothenate kinase; P- 87.9 0.57 2E-05 49.9 6.0 28 174-201 78-105 (308)
430 3lnc_A Guanylate kinase, GMP k 87.9 0.19 6.4E-06 51.2 2.1 25 176-200 27-52 (231)
431 2ck3_A ATP synthase subunit al 87.9 0.72 2.5E-05 51.7 6.9 101 166-266 151-273 (510)
432 3cmu_A Protein RECA, recombina 87.8 1.1 3.7E-05 59.2 9.5 84 176-266 383-472 (2050)
433 3exa_A TRNA delta(2)-isopenten 87.8 0.32 1.1E-05 51.1 3.7 25 176-200 3-27 (322)
434 2r8r_A Sensor protein; KDPD, P 87.7 0.56 1.9E-05 46.7 5.2 37 178-216 8-44 (228)
435 3foz_A TRNA delta(2)-isopenten 87.5 0.36 1.2E-05 50.6 3.9 26 175-200 9-34 (316)
436 3hjn_A DTMP kinase, thymidylat 87.5 1.6 5.6E-05 42.8 8.6 50 178-229 2-51 (197)
437 2pcj_A ABC transporter, lipopr 87.4 0.26 8.9E-06 49.8 2.8 25 176-200 30-54 (224)
438 1cp2_A CP2, nitrogenase iron p 87.4 0.4 1.4E-05 50.0 4.4 38 177-216 2-39 (269)
439 2dyk_A GTP-binding protein; GT 87.4 0.37 1.3E-05 45.4 3.8 23 177-199 2-24 (161)
440 3iqw_A Tail-anchored protein t 87.3 0.74 2.5E-05 49.5 6.4 50 172-223 12-61 (334)
441 3io3_A DEHA2D07832P; chaperone 87.3 0.74 2.5E-05 49.8 6.5 50 172-222 14-64 (348)
442 3tif_A Uncharacterized ABC tra 87.2 0.31 1.1E-05 49.6 3.2 25 176-200 31-55 (235)
443 3b85_A Phosphate starvation-in 87.2 0.24 8.2E-06 49.3 2.3 23 177-199 23-45 (208)
444 3a8t_A Adenylate isopentenyltr 87.2 0.31 1.1E-05 51.9 3.2 25 176-200 40-64 (339)
445 2wji_A Ferrous iron transport 87.1 0.37 1.3E-05 45.8 3.6 23 177-199 4-26 (165)
446 1q57_A DNA primase/helicase; d 87.1 1.6 5.5E-05 50.2 9.7 56 176-234 242-298 (503)
447 1fx0_A ATP synthase alpha chai 87.1 0.52 1.8E-05 52.8 5.1 87 176-266 163-266 (507)
448 2f9l_A RAB11B, member RAS onco 87.0 0.34 1.2E-05 47.9 3.3 24 176-199 5-28 (199)
449 3ld9_A DTMP kinase, thymidylat 86.8 0.81 2.8E-05 45.8 5.9 30 173-202 18-47 (223)
450 1cr0_A DNA primase/helicase; R 86.7 0.62 2.1E-05 49.4 5.4 39 176-215 35-73 (296)
451 2cbz_A Multidrug resistance-as 86.7 0.31 1.1E-05 49.7 2.9 25 176-200 31-55 (237)
452 1ltq_A Polynucleotide kinase; 86.7 0.38 1.3E-05 51.2 3.7 23 177-199 3-25 (301)
453 2afh_E Nitrogenase iron protei 86.6 0.49 1.7E-05 50.0 4.6 39 176-216 2-40 (289)
454 2zej_A Dardarin, leucine-rich 86.6 0.33 1.1E-05 47.2 3.0 21 178-198 4-24 (184)
455 2d2e_A SUFC protein; ABC-ATPas 86.5 0.37 1.3E-05 49.6 3.4 24 176-199 29-52 (250)
456 1b0u_A Histidine permease; ABC 86.5 0.32 1.1E-05 50.5 2.9 25 176-200 32-56 (262)
457 3gfo_A Cobalt import ATP-bindi 86.5 0.32 1.1E-05 50.7 2.9 25 176-200 34-58 (275)
458 1a7j_A Phosphoribulokinase; tr 86.3 0.24 8.1E-06 52.3 1.9 27 175-201 4-30 (290)
459 2zu0_C Probable ATP-dependent 86.3 0.38 1.3E-05 50.0 3.4 24 176-199 46-69 (267)
460 3oaa_A ATP synthase subunit al 86.2 1.5 5E-05 49.0 8.0 96 167-266 152-265 (513)
461 2ce2_X GTPase HRAS; signaling 86.2 0.4 1.4E-05 45.3 3.3 23 178-200 5-27 (166)
462 3bgw_A DNAB-like replicative h 86.2 2.2 7.6E-05 47.8 9.8 50 176-229 197-246 (444)
463 3cwq_A Para family chromosome 86.2 0.96 3.3E-05 45.0 6.2 44 178-224 2-46 (209)
464 1sgw_A Putative ABC transporte 86.1 0.29 1E-05 48.9 2.3 24 177-200 36-59 (214)
465 1ji0_A ABC transporter; ATP bi 86.1 0.34 1.2E-05 49.5 2.9 25 176-200 32-56 (240)
466 1q3t_A Cytidylate kinase; nucl 86.1 0.5 1.7E-05 48.2 4.1 27 175-201 15-41 (236)
467 2olj_A Amino acid ABC transpor 86.1 0.34 1.2E-05 50.2 2.9 26 175-200 49-74 (263)
468 2pze_A Cystic fibrosis transme 86.1 0.34 1.2E-05 49.1 2.8 25 176-200 34-58 (229)
469 1g6h_A High-affinity branched- 86.0 0.35 1.2E-05 50.0 2.9 25 176-200 33-57 (257)
470 2ged_A SR-beta, signal recogni 86.0 0.77 2.6E-05 44.8 5.4 25 175-199 47-71 (193)
471 1mv5_A LMRA, multidrug resista 85.9 0.37 1.3E-05 49.3 3.0 25 176-200 28-52 (243)
472 4g1u_C Hemin import ATP-bindin 85.9 0.35 1.2E-05 50.2 2.9 25 176-200 37-61 (266)
473 1z2a_A RAS-related protein RAB 85.8 0.43 1.5E-05 45.3 3.3 23 177-199 6-28 (168)
474 2ff7_A Alpha-hemolysin translo 85.7 0.37 1.3E-05 49.5 2.9 25 176-200 35-59 (247)
475 1vpl_A ABC transporter, ATP-bi 85.7 0.37 1.3E-05 49.7 2.9 25 176-200 41-65 (256)
476 2v9p_A Replication protein E1; 85.6 0.44 1.5E-05 50.3 3.4 26 175-200 125-150 (305)
477 1nlf_A Regulatory protein REPA 85.5 0.41 1.4E-05 50.3 3.2 26 176-201 30-55 (279)
478 4edh_A DTMP kinase, thymidylat 85.5 1.5 5.3E-05 43.5 7.3 33 176-209 6-38 (213)
479 3con_A GTPase NRAS; structural 85.5 0.45 1.5E-05 46.4 3.3 24 177-200 22-45 (190)
480 3eph_A TRNA isopentenyltransfe 85.5 0.5 1.7E-05 51.5 3.9 25 177-201 3-27 (409)
481 3zvl_A Bifunctional polynucleo 85.4 0.35 1.2E-05 54.1 2.8 27 174-200 256-282 (416)
482 2ocp_A DGK, deoxyguanosine kin 85.4 0.54 1.9E-05 48.1 4.0 26 176-201 2-27 (241)
483 3kjh_A CO dehydrogenase/acetyl 85.4 0.82 2.8E-05 47.0 5.5 43 179-223 3-45 (254)
484 2qi9_C Vitamin B12 import ATP- 85.3 0.39 1.3E-05 49.2 2.9 25 176-200 26-50 (249)
485 2orw_A Thymidine kinase; TMTK, 85.3 0.63 2.1E-05 45.2 4.2 25 177-201 4-28 (184)
486 2eyu_A Twitching motility prot 85.3 0.57 1.9E-05 48.5 4.1 109 175-295 24-135 (261)
487 1r8s_A ADP-ribosylation factor 85.2 0.51 1.7E-05 44.6 3.5 22 179-200 3-24 (164)
488 2ghi_A Transport protein; mult 85.2 0.4 1.4E-05 49.6 2.9 25 176-200 46-70 (260)
489 2ixe_A Antigen peptide transpo 85.2 0.4 1.4E-05 49.9 2.9 26 175-200 44-69 (271)
490 2wjg_A FEOB, ferrous iron tran 85.1 0.55 1.9E-05 45.7 3.7 23 177-199 8-30 (188)
491 2v3c_C SRP54, signal recogniti 85.0 0.36 1.2E-05 54.0 2.5 37 176-214 99-135 (432)
492 1svm_A Large T antigen; AAA+ f 85.0 0.53 1.8E-05 51.5 3.8 27 174-200 167-193 (377)
493 1u0j_A DNA replication protein 85.0 0.9 3.1E-05 46.6 5.3 37 164-200 90-128 (267)
494 2nq2_C Hypothetical ABC transp 84.9 0.41 1.4E-05 49.3 2.8 25 176-200 31-55 (253)
495 2ihy_A ABC transporter, ATP-bi 84.9 0.42 1.4E-05 50.0 2.9 25 176-200 47-71 (279)
496 2yz2_A Putative ABC transporte 84.9 0.42 1.4E-05 49.7 2.9 25 176-200 33-57 (266)
497 3gqb_A V-type ATP synthase alp 84.9 0.63 2.1E-05 52.5 4.3 58 166-227 210-269 (578)
498 1u8z_A RAS-related protein RAL 84.9 0.51 1.8E-05 44.7 3.3 24 177-200 5-28 (168)
499 1c1y_A RAS-related protein RAP 84.8 0.52 1.8E-05 44.6 3.3 22 178-199 5-26 (167)
500 2nzj_A GTP-binding protein REM 84.8 0.49 1.7E-05 45.3 3.1 24 176-199 4-27 (175)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=9.9e-46 Score=439.14 Aligned_cols=308 Identities=12% Similarity=0.136 Sum_probs=239.6
Q ss_pred cccHHHHHHHHHHHhcCC---CceEEEEEcCCCCcHHHHHHHHHH--HhhhcCCCCEEEEEEeCCcc--CHHHHHHHHHH
Q 044755 157 FESRLCALKSVQNALTDV---NVSIVGVYGMGGIGKTTLVKEVAR--QAREDKLFDLVVFSEVSQTL--DIKKIQQEIAE 229 (1079)
Q Consensus 157 ~~gr~~~~~~l~~~l~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~ 229 (1079)
| ||+.++++|.++|... +.+||+|+||||+||||||+++|+ +.+++.+|++++||++++.. ++..++..|+.
T Consensus 131 ~-GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 Y-IREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp C-CCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 5 9999999999999733 689999999999999999999998 46777899999999999885 89999999999
Q ss_pred HhCCCcc--------ccchHHHHHHHHHHHHcCCcEEEEEeCCCCccccccccCCCCCCCCCcEEEEEecChhhhhhcC-
Q 044755 230 KLGLVLE--------EETGSRRASRLYERLKKEEKILIILDNIWKCVDLEAVGIPFGDDHKGCKLLLTARDRNVLFRMG- 300 (1079)
Q Consensus 230 ~l~~~~~--------~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~- 300 (1079)
+++.... ..........+.+.+...|||||||||||+..++ .+. ..+||+||||||++.++..++
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCS
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCC
Confidence 9986421 0112223566667776324999999999998754 221 126999999999999998876
Q ss_pred CCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHhcCChhHHHHHHHHhcCCCcCCC
Q 044755 301 SQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPSEVNF 380 (1079)
Q Consensus 301 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~ 380 (1079)
...+|+|++|+.++||+||.+++.....++.+.+++++|+++|+|+||||+++|+.|+.++ |+.+ +.+........
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~~~~ 359 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLESRG 359 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHHHHC
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhHHHhhccc
Confidence 4468999999999999999999854433477888999999999999999999999997663 4333 22211100000
Q ss_pred CCCchhhhhhHHHhhccCChHHHHHHHH-----------HhcccCCCcchhHHHHHHHhh--ccccccC---CHHHHHHH
Q 044755 381 EGVPAEAYSTIELSFKNLKGEQLKKFFM-----------LCSLLGNSICTSYLFQCCMGL--GILQKAN---KLEDARNK 444 (1079)
Q Consensus 381 ~~~~~~~~~~l~~sy~~L~~~~lk~cf~-----------~~s~fp~~~~~~~li~~w~ae--g~i~~~~---~~~~~~~~ 444 (1079)
..++.+++.+||++||++ +|.||+ |||+||.++.++ ++.|+|+ ||+.+.. +.+++.+
T Consensus 360 ---~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~- 432 (549)
T 2a5y_B 360 ---LVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVAD- 432 (549)
T ss_dssp ---SSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHH-
T ss_pred ---HHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHH-
Confidence 235888999999999997 999999 999999777777 8999999 9997532 3444433
Q ss_pred HHHHHHHHHhhccccccC--CCCcEeehHHHHHHHHHHhhccC
Q 044755 445 LYALVHELRDSCLLLEGD--SNQQLSMHDVIRDVAISIACRDQ 485 (1079)
Q Consensus 445 ~~~~~~~L~~~~l~~~~~--~~~~~~~Hdlv~~~~~~~~~~~~ 485 (1079)
++++|+++||++... ...+|+|||+||++|++++.+++
T Consensus 433 ---~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 433 ---RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp ---HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred ---HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 599999999998653 33579999999999999887654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.2e-37 Score=364.47 Aligned_cols=280 Identities=21% Similarity=0.220 Sum_probs=220.7
Q ss_pred cccHHHHHHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCE-EEEEEeCCccCHHHHHHHHHHHhCCC
Q 044755 157 FESRLCALKSVQNALTD-VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDL-VVFSEVSQTLDIKKIQQEIAEKLGLV 234 (1079)
Q Consensus 157 ~~gr~~~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1079)
.+||+.++++|.++|.+ ++.++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..++..++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999974 56899999999999999999999998777778986 99999999999988888887754321
Q ss_pred c---c--c-------cchHHHHHHHHHHHH--cCCcEEEEEeCCCCccccccccCCCCCCCCCcEEEEEecChhhhhhcC
Q 044755 235 L---E--E-------ETGSRRASRLYERLK--KEEKILIILDNIWKCVDLEAVGIPFGDDHKGCKLLLTARDRNVLFRMG 300 (1079)
Q Consensus 235 ~---~--~-------~~~~~~~~~l~~~l~--~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~ 300 (1079)
. . . .........+.+.+. .++|+||||||||+...|+.+. .||+||||||++.++..+.
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcC
Confidence 0 0 0 011122344444442 4799999999999988888652 5899999999999986544
Q ss_pred CCceEeCC------CCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHhcC--ChhHHHHHHHHh
Q 044755 301 SQKNFSID------ILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIARALRNK--SVPEWKSALQEL 372 (1079)
Q Consensus 301 ~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~--~~~~w~~~~~~l 372 (1079)
....++++ +|+.+|||+||.++.+.. ..++..+| |+|+||||+++|+.|+.+ +..+|+..
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~---- 350 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV---- 350 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----
Confidence 33355666 999999999999987432 12233443 999999999999999988 67788653
Q ss_pred cCCCcCCCCCCchhhhhhHHHhhccCChHHH-HHHHHHhcccCC--CcchhHHHHHHHhhccccccCCHHHHHHHHHHHH
Q 044755 373 RMPSEVNFEGVPAEAYSTIELSFKNLKGEQL-KKFFMLCSLLGN--SICTSYLFQCCMGLGILQKANKLEDARNKLYALV 449 (1079)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~l-k~cf~~~s~fp~--~~~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~ 449 (1079)
+ ...+..++.+||+.||++ . |.||+|||+||. .|..+.++.+|+++|. ++ +.+++
T Consensus 351 ------~----~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------ed----Ae~~L 408 (1221)
T 1vt4_I 351 ------N----CDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------SD----VMVVV 408 (1221)
T ss_dssp ------S----CHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------HH----HHHHH
T ss_pred ------C----hhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------HH----HHHHH
Confidence 1 356999999999999997 7 999999999995 5666789999998871 22 33468
Q ss_pred HHHHhhccccccCCCCcEeehHHHHHHH
Q 044755 450 HELRDSCLLLEGDSNQQLSMHDVIRDVA 477 (1079)
Q Consensus 450 ~~L~~~~l~~~~~~~~~~~~Hdlv~~~~ 477 (1079)
++|+++||++..+...+|+|||++++++
T Consensus 409 ~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 409 NKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 9999999999765567899999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.9e-35 Score=388.14 Aligned_cols=312 Identities=21% Similarity=0.306 Sum_probs=240.7
Q ss_pred ccCCccccccHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhh-cC-CCCEEEEEEeCCcc--CHHHH
Q 044755 150 SRKGYEAFESRLCALKSVQNALT--DVNVSIVGVYGMGGIGKTTLVKEVARQARE-DK-LFDLVVFSEVSQTL--DIKKI 223 (1079)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~-~F~~~~wv~~~~~~--~~~~~ 223 (1079)
+|.....|+||++++++|.++|. +++.++|+|+||||+||||||+++|++.+. .. .|+.++||++++.. +....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 45566779999999999999996 467899999999999999999999987643 33 45788999999853 34455
Q ss_pred HHHHHHHhCCCcc-----ccchHHHHHHHHHHHHc-CCcEEEEEeCCCCccccccccCCCCCCCCCcEEEEEecChhhhh
Q 044755 224 QQEIAEKLGLVLE-----EETGSRRASRLYERLKK-EEKILIILDNIWKCVDLEAVGIPFGDDHKGCKLLLTARDRNVLF 297 (1079)
Q Consensus 224 ~~~i~~~l~~~~~-----~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 297 (1079)
+..++..+..... ..........+...+.. ++||||||||||+..+|+.+ .+||+||||||++.++.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 6677777765332 11223334444444432 34999999999998887765 46899999999999985
Q ss_pred h-cCCCceEeCCC-CCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHhcCChhHHHHHHHHhcCC
Q 044755 298 R-MGSQKNFSIDI-LNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMP 375 (1079)
Q Consensus 298 ~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~ 375 (1079)
. ++....+++++ |++++|++||...++.. .+...+++++|+++|+|+||||+++|++|+.+. .+|...++.+...
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNK 348 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSC
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhh
Confidence 4 56677899996 99999999999988432 234456799999999999999999999999875 4799888887544
Q ss_pred CcCCC----CCCchhhhhhHHHhhccCChHHHHHHHHHhcccCC--CcchhHHHHHHHhhccccccCCHHHHHHHHHHHH
Q 044755 376 SEVNF----EGVPAEAYSTIELSFKNLKGEQLKKFFMLCSLLGN--SICTSYLFQCCMGLGILQKANKLEDARNKLYALV 449 (1079)
Q Consensus 376 ~~~~~----~~~~~~~~~~l~~sy~~L~~~~lk~cf~~~s~fp~--~~~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~ 449 (1079)
..... ....+.+.+++.+||+.||++ .|.||+|||+||. .|..+.++..|.+++ +++ .+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~--------~~~----~~~l 415 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET--------EEV----EDIL 415 (1249)
T ss_dssp CCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH--------HHH----HHHH
T ss_pred hhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH--------HHH----HHHH
Confidence 32221 111246899999999999998 8999999999994 577789999996542 233 4558
Q ss_pred HHHHhhccccccCCCC--cEeehHHHHHHHHHHhhcc
Q 044755 450 HELRDSCLLLEGDSNQ--QLSMHDVIRDVAISIACRD 484 (1079)
Q Consensus 450 ~~L~~~~l~~~~~~~~--~~~~Hdlv~~~~~~~~~~~ 484 (1079)
++|++++|++...... +|+|||+||++|+..+.++
T Consensus 416 ~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 416 QEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9999999998653332 5999999999999997654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=7.9e-32 Score=325.83 Aligned_cols=306 Identities=21% Similarity=0.312 Sum_probs=227.4
Q ss_pred cCCccccccHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhh-cCCC-CEEEEEEeCCccCHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALT--DVNVSIVGVYGMGGIGKTTLVKEVARQARE-DKLF-DLVVFSEVSQTLDIKKIQQE 226 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~~~~~~~~ 226 (1079)
|.....|+||+.++++|.++|. .++.++|+|+||||+||||||++++++.+. ..+| +.++|++++.. +...++..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 3445579999999999999997 356789999999999999999999987644 4668 58999999875 34444444
Q ss_pred H---HHHhCCCc-----cccchHHHHHHHHHHHHc-CCcEEEEEeCCCCccccccccCCCCCCCCCcEEEEEecChhhhh
Q 044755 227 I---AEKLGLVL-----EEETGSRRASRLYERLKK-EEKILIILDNIWKCVDLEAVGIPFGDDHKGCKLLLTARDRNVLF 297 (1079)
Q Consensus 227 i---~~~l~~~~-----~~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 297 (1079)
+ +..++... ...........+...+.+ .+++||||||+|+...++.+ ..|++||||||+..++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHH
Confidence 3 44554211 112223344555555553 37999999999997766543 35899999999999877
Q ss_pred hcCCCceEeC---CCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHhcCChhHHHHHHHHhcC
Q 044755 298 RMGSQKNFSI---DILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRM 374 (1079)
Q Consensus 298 ~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~l~~ 374 (1079)
.+. ...+++ ++|+.+++++||.+.++.. .....+.+++|+++|+|+|+||..+|+.++.+. .+|..+++.+..
T Consensus 272 ~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~ 347 (591)
T 1z6t_A 272 SVM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQN 347 (591)
T ss_dssp TCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHS
T ss_pred hcC-CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 643 233433 6899999999999998542 223345689999999999999999999998763 479988888754
Q ss_pred CCcCCC----CCCchhhhhhHHHhhccCChHHHHHHHHHhcccCC--CcchhHHHHHHHhhccccccCCHHHHHHHHHHH
Q 044755 375 PSEVNF----EGVPAEAYSTIELSFKNLKGEQLKKFFMLCSLLGN--SICTSYLFQCCMGLGILQKANKLEDARNKLYAL 448 (1079)
Q Consensus 375 ~~~~~~----~~~~~~~~~~l~~sy~~L~~~~lk~cf~~~s~fp~--~~~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~ 448 (1079)
...... ......+..++..||+.||++ .|.||.+||+||. .|..+.+...|.++ .++ +..+
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~--------~~~----~~~~ 414 (591)
T 1z6t_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME--------TEE----VEDI 414 (591)
T ss_dssp CCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCC--------HHH----HHHH
T ss_pred hHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccC--------HHH----HHHH
Confidence 332211 112346889999999999998 7999999999995 56777888888543 122 3455
Q ss_pred HHHHHhhccccccC--CCCcEeehHHHHHHHHHHh
Q 044755 449 VHELRDSCLLLEGD--SNQQLSMHDVIRDVAISIA 481 (1079)
Q Consensus 449 ~~~L~~~~l~~~~~--~~~~~~~Hdlv~~~~~~~~ 481 (1079)
+++|++++|++... ...+|+||++||++++...
T Consensus 415 l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 415 LQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 89999999997542 2347999999999999874
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=7.1e-30 Score=310.80 Aligned_cols=495 Identities=18% Similarity=0.137 Sum_probs=309.0
Q ss_pred EEeccCCcCCCCccccccceeEEEecCCCCCCCCC--ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcc
Q 044755 488 VLVRNEDVWEWPDDIALKECYAISLRGCSIHELPE--GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQ 565 (1079)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 565 (1079)
+.+.+......|. ..+..++++.++++.+..++. ...+++|++|++.++... .+ +...|.++++|++|++++|.
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i--~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 16 YQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TI--EDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EE--CTTTTTTCTTCCEEECTTCC
T ss_pred eEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-cc--CHHHhhchhhcCEeECCCCc
Confidence 3344444555554 345889999999999988765 348999999999987543 44 55667999999999999999
Q ss_pred cccc-CccccccccccEEeccccccCC--cccccCCcccceeeccCCcCc--ccChhhccCCcccEEcccccccccccCh
Q 044755 566 LLLL-PSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIV--MLPEELGHLTKLRQLDLSNCFKLKVIAP 640 (1079)
Q Consensus 566 i~~l-p~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~~~ 640 (1079)
+..+ |..++++++|++|++++|.+.. +..++++.+|++|++++|.+. .+|..++++++|++|++++| .+..+++
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~ 170 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITV 170 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECT
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecCh
Confidence 9987 8889999999999999999887 478999999999999999887 47999999999999999998 7888877
Q ss_pred hhhhcccccc----eeecccccccccCCCCCc-------------hhhhcchhhhccCCCCcEEEEEeeCCCCC------
Q 044755 641 NVISRLVRLE----ELYMSNCFVEWDDEGPNS-------------ERINARLDELMHLPRLTTLEVHVKNDNVL------ 697 (1079)
Q Consensus 641 ~~l~~L~~L~----~L~l~~~~~~~~~~~~~~-------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~------ 697 (1079)
..++.+.+|+ +|++++|.+......... .........++++++|+.+.+..+.....
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 7677777766 688887765411110000 00012233344555555555443322111
Q ss_pred Cchhhhcc-----cceeeeee----------ecCCcccceEeeccccccccccccccccccCCCceeeccCCCCcceecc
Q 044755 698 PEGFFARK-----LERFKISK----------LQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVD 762 (1079)
Q Consensus 698 ~~~~~~~~-----L~~L~l~~----------~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~ 762 (1079)
+.. .+.. ++.+.+.. +..+++|+.|.+.++.... + .. ...+++|+.|++.+|.. ..+
T Consensus 251 ~~~-~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~--l~~~~~L~~L~l~~n~l-~~l-- 322 (606)
T 3vq2_A 251 EPS-IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-L-ED--VPKHFKWQSLSIIRCQL-KQF-- 322 (606)
T ss_dssp CGG-GGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-C-CC--CCTTCCCSEEEEESCCC-SSC--
T ss_pred ChH-HhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh-h-hh--ccccccCCEEEcccccC-ccc--
Confidence 100 0111 11222200 2345778888887765422 1 12 24567888888888753 211
Q ss_pred cCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccc-hHHhccCCccceEeeccccccc
Q 044755 763 SKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFL-LSAAKCLPRLERIAVINCRNIQ 841 (1079)
Q Consensus 763 ~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~l~~L~~L~i~~c~~l~ 841 (1079)
+.. .+++|+.|++.++.....+ ....+++|++|++++| .+..+.. ......+++|+.|++++|. +.
T Consensus 323 -----p~~-~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~ 389 (606)
T 3vq2_A 323 -----PTL-DLPFLKSLTLTMNKGSISF-----KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNG-AI 389 (606)
T ss_dssp -----CCC-CCSSCCEEEEESCSSCEEC-----CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCS-EE
T ss_pred -----ccC-CCCccceeeccCCcCccch-----hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCc-cc
Confidence 222 6788888888887544333 3457888888888885 3444421 1345667888888888775 33
Q ss_pred cccccccccccccccccccccccEEecCCCCCccccccCccccccccccccccccccccccccccccccccccccccccc
Q 044755 842 EIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNL 921 (1079)
Q Consensus 842 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 921 (1079)
.++ .....+++|+.|+++++.-....+.. ....+.......+.. + ......+..+..+++|
T Consensus 390 ~~~----------~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~~l~~L~~L~l~~---n-~l~~~~~~~~~~l~~L 450 (606)
T 3vq2_A 390 IMS----------ANFMGLEELQHLDFQHSTLKRVTEFS-----AFLSLEKLLYLDISY---T-NTKIDFDGIFLGLTSL 450 (606)
T ss_dssp EEC----------CCCTTCTTCCEEECTTSEEESTTTTT-----TTTTCTTCCEEECTT---S-CCEECCTTTTTTCTTC
T ss_pred cch----------hhccCCCCCCeeECCCCccCCccChh-----hhhccccCCEEECcC---C-CCCccchhhhcCCCCC
Confidence 332 12345677777777765422111100 000000000000000 0 0000111234457788
Q ss_pred ceeeecccceeeecCCCCccccccccccceEEEEccCcccccccccchhhhccccceEEEecccccceeecccccccccC
Q 044755 922 EVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVL 1001 (1079)
Q Consensus 922 ~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~ 1001 (1079)
++|++++|.+... ..+..+..+++|+.|++++| +++.+ ++..+..+++|+.|++++|. +..+ .+..+.+
T Consensus 451 ~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~--- 519 (606)
T 3vq2_A 451 NTLKMAGNSFKDN----TLSNVFANTTNLTFLDLSKC-QLEQI-SWGVFDTLHRLQLLNMSHNN-LLFL-DSSHYNQ--- 519 (606)
T ss_dssp CEEECTTCEEGGG----EECSCCTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSSC-CSCE-EGGGTTT---
T ss_pred CEEECCCCcCCCc----chHHhhccCCCCCEEECCCC-cCCcc-ChhhhcccccCCEEECCCCc-CCCc-CHHHccC---
Confidence 8888888866641 01234556788888888887 55555 34556777888888888874 4443 1344443
Q ss_pred CcccccccCeeecccCCCccccCCCccccCCC-CccEEEEecCCC
Q 044755 1002 PNFVFPQVTSLRLSGLPELKCLYPGMHTSEWP-ALKLLKVSDCDQ 1045 (1079)
Q Consensus 1002 ~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~-sL~~L~i~~C~~ 1045 (1079)
+++|+.|++++|. ++.+|..+. .++ +|++|+++++|-
T Consensus 520 ----l~~L~~L~l~~N~-l~~~p~~~~--~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 520 ----LYSLSTLDCSFNR-IETSKGILQ--HFPKSLAFFNLTNNSV 557 (606)
T ss_dssp ----CTTCCEEECTTSC-CCCEESCGG--GSCTTCCEEECCSCCC
T ss_pred ----CCcCCEEECCCCc-CcccCHhHh--hhcccCcEEEccCCCc
Confidence 7788888888764 777777643 455 588888877653
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=3.8e-30 Score=320.02 Aligned_cols=503 Identities=17% Similarity=0.094 Sum_probs=249.6
Q ss_pred ceeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccc-ccCccccccccccEEec
Q 044755 506 ECYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLL-LLPSSIDLLVNLQTLCL 584 (1079)
Q Consensus 506 ~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L 584 (1079)
.++++.+.+|.+........+++|++|++.++.....+ |. +.++++|++|++++|.+. .+|..++.+++|++|++
T Consensus 179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI--PF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCC--CB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCC--cc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 44555555554443333344555555555554433322 22 455555555555555554 33445555555555555
Q ss_pred cccccCC-cccccCCcccceeeccCCcCc-ccChhhccC-CcccEEcccccccccccChhhhhcccccceeecccccccc
Q 044755 585 VECMLDD-IAIIGKLKNLEILSFWGSVIV-MLPEELGHL-TKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEW 661 (1079)
Q Consensus 585 ~~~~l~~-~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L-~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~ 661 (1079)
++|.+.. +... .+++|++|++++|.+. .+|..+..+ ++|++|++++| .+....+..++++++|++|++++|.+.
T Consensus 255 s~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~- 331 (768)
T 3rgz_A 255 SSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFS- 331 (768)
T ss_dssp CSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS-EEEECCCGGGGGCTTCCEEECCSSEEE-
T ss_pred CCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC-cCCCccchHHhcCCCccEEECCCCccc-
Confidence 5555443 1111 4555555555555444 445444443 55555555554 333222223455555555555554332
Q ss_pred cCCCCCchhhhcch-hhhccCCCCcEEEEEeeCCC-CCCchhh-hc-ccceeeeee------------------------
Q 044755 662 DDEGPNSERINARL-DELMHLPRLTTLEVHVKNDN-VLPEGFF-AR-KLERFKISK------------------------ 713 (1079)
Q Consensus 662 ~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~-~~~~~~~-~~-~L~~L~l~~------------------------ 713 (1079)
+..+ ..+..+++|+.|+++.+... .+|..+. .. +|+.|.++.
T Consensus 332 ----------~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L 401 (768)
T 3rgz_A 332 ----------GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401 (768)
T ss_dssp ----------EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred ----------CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence 1111 12444555555555444433 3333322 11 344443332
Q ss_pred ------------ecCCcccceEeeccccccccccccccccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeec
Q 044755 714 ------------LQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNL 781 (1079)
Q Consensus 714 ------------~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 781 (1079)
+..+++|+.|+++++.........+ ..+++|+.|++.++.....+ ......+++|+.|++
T Consensus 402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~------p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLWLNMLEGEI------PQELMYVKTLETLIL 473 (768)
T ss_dssp CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCEEECCSSCCCSCC------CGGGGGCTTCCEEEC
T ss_pred CCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH--hcCCCCCEEECCCCcccCcC------CHHHcCCCCceEEEe
Confidence 1223444455554443222221111 33455555555554321111 011134556666666
Q ss_pred cccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeeccccccccccccccccccccccccccc
Q 044755 782 YNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFS 861 (1079)
Q Consensus 782 ~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~ 861 (1079)
.++.-...+ +...+.+++|+.|++++|.-...+|. .+..+++|+.|++++|.-...++ .....++
T Consensus 474 ~~N~l~~~~---p~~l~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p----------~~l~~l~ 538 (768)
T 3rgz_A 474 DFNDLTGEI---PSGLSNCTNLNWISLSNNRLTGEIPK--WIGRLENLAILKLSNNSFSGNIP----------AELGDCR 538 (768)
T ss_dssp CSSCCCSCC---CGGGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEEECC----------GGGGGCT
T ss_pred cCCcccCcC---CHHHhcCCCCCEEEccCCccCCcCCh--HHhcCCCCCEEECCCCcccCcCC----------HHHcCCC
Confidence 554322122 11234566666666666543223332 34456667777766665433332 3345678
Q ss_pred cccEEecCCCCCccccccCccccccccccccccc-----------------------------cccccccc-------cc
Q 044755 862 QLRTLCLGSLPELTSFCCEVKKNREAQGMHETCS-----------------------------NKISSFED-------KL 905 (1079)
Q Consensus 862 ~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~-------~~ 905 (1079)
+|+.|++++|+-...+|................. ..+..+.. ..
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 8888888877543344332100000000000000 00000000 00
Q ss_pred ccccccccccccccccceeeecccceeeecCCCCccccccccccceEEEEccCcccccccccchhhhccccceEEEeccc
Q 044755 906 DISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCK 985 (1079)
Q Consensus 906 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 985 (1079)
......+..+..+++|+.|++++|+++.. .+..+..+++|+.|++++| +++.. .+..+..+++|+.|++++|.
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~-----ip~~l~~l~~L~~L~Ls~N-~l~g~-ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGY-----IPKEIGSMPYLFILNLGHN-DISGS-IPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSC-----CCGGGGGCTTCCEEECCSS-CCCSC-CCGGGGGCTTCCEEECCSSC
T ss_pred eecccCchhhhccccccEEECcCCccccc-----CCHHHhccccCCEEeCcCC-ccCCC-CChHHhCCCCCCEEECCCCc
Confidence 01111223445678999999999988754 2346778999999999998 55544 24678889999999999986
Q ss_pred ccceeecccccccccCCcccccccCeeecccCCCccccCCCccccCCCCccEEEEecCCCceeecccccccccccccCCC
Q 044755 986 GLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGMHTSEWPALKLLKVSDCDQVTVFDSELFSFCKSSEEDKP 1065 (1079)
Q Consensus 986 ~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~lp~~l~~~~~~~~~~~~ 1065 (1079)
--..+ |..+.+ +++|+.|++++++-...+|.+.. +.++....+.|+|.|--.| +..+....+++|+
T Consensus 692 l~g~i--p~~l~~-------l~~L~~L~ls~N~l~g~iP~~~~---~~~~~~~~~~gN~~Lcg~~--l~~C~~~~~~~~~ 757 (768)
T 3rgz_A 692 LDGRI--PQAMSA-------LTMLTEIDLSNNNLSGPIPEMGQ---FETFPPAKFLNNPGLCGYP--LPRCDPSNADGYA 757 (768)
T ss_dssp CEECC--CGGGGG-------CCCCSEEECCSSEEEEECCSSSS---GGGSCGGGGCSCTEEESTT--SCCCCSCC-----
T ss_pred ccCcC--ChHHhC-------CCCCCEEECcCCcccccCCCchh---hccCCHHHhcCCchhcCCC--CcCCCCCccCCCC
Confidence 44444 555544 88999999999887777887643 4556666677888887655 3355555599999
Q ss_pred CCCC
Q 044755 1066 DIPA 1069 (1079)
Q Consensus 1066 ~~~~ 1069 (1079)
+|+.
T Consensus 758 ~~~~ 761 (768)
T 3rgz_A 758 HHQR 761 (768)
T ss_dssp ----
T ss_pred CCCC
Confidence 9974
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=2.2e-29 Score=306.53 Aligned_cols=479 Identities=15% Similarity=0.152 Sum_probs=318.6
Q ss_pred eEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccccc-CccccccccccEEeccc
Q 044755 508 YAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVE 586 (1079)
Q Consensus 508 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~ 586 (1079)
+.+...+..+..+|.... +++++|++.++... .+ +...|.++++|++|++++|.++.+ |..++++++|++|+|++
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~-~~--~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLK-IL--KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTSCCC-EE--CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEccCCCcccCCCCCC-CCcCEEECCCCCcC-Ee--ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 467777888888887654 88999999997653 44 556689999999999999999987 66799999999999999
Q ss_pred cccCC--cccccCCcccceeeccCCcCcccC-hhhccCCcccEEcccccccccc--cChhhhhcccccceeecccccccc
Q 044755 587 CMLDD--IAIIGKLKNLEILSFWGSVIVMLP-EELGHLTKLRQLDLSNCFKLKV--IAPNVISRLVRLEELYMSNCFVEW 661 (1079)
Q Consensus 587 ~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~--~~~~~l~~L~~L~~L~l~~~~~~~ 661 (1079)
|.++. |..++++++|++|++++|.+..+| ..++++++|++|++++| .+.. +|. .++++++|++|++++|.+..
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPA-YFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCG-GGGTCTTCCEEECCSSCCCE
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechH-hHhhcCCCCEEEccCCccee
Confidence 99887 688999999999999999998887 67999999999999998 5664 454 48999999999999987651
Q ss_pred cCCCCCchhhhcchhhhccCCC-CcEEEEEeeCCCCCCchhh-hcccceeeeee-----------ecCCcccceEee---
Q 044755 662 DDEGPNSERINARLDELMHLPR-LTTLEVHVKNDNVLPEGFF-ARKLERFKISK-----------LQGIKDVEYLCL--- 725 (1079)
Q Consensus 662 ~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~-----------~~~l~~L~~L~L--- 725 (1079)
.. ...+..+.+++. +..|+++.+.+..++...+ ..+|+.|.+.. +..+++++.+.+
T Consensus 168 ~~--------~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~ 239 (606)
T 3vq2_A 168 IT--------VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239 (606)
T ss_dssp EC--------TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEE
T ss_pred cC--------hhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccccc
Confidence 11 112334444443 4567777766666555433 23455555543 112333333322
Q ss_pred -----------------------------ccccccccccccccccccCCCceeeccCCCCcceecccCCcCCCCCCCCcc
Q 044755 726 -----------------------------DKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL 776 (1079)
Q Consensus 726 -----------------------------~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 776 (1079)
............ ...+++|+.|.+.++... .+ +....+++|
T Consensus 240 ~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~-~l-------~~l~~~~~L 309 (606)
T 3vq2_A 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIK-YL-------EDVPKHFKW 309 (606)
T ss_dssp CCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCC-CC-------CCCCTTCCC
T ss_pred ccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccch-hh-------hhccccccC
Confidence 122222222222 245677888888776421 11 122567788
Q ss_pred ceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeecccccccccccccccccccccc
Q 044755 777 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQ 856 (1079)
Q Consensus 777 ~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~ 856 (1079)
+.|++.++.. ..++ .. .+++|++|++++|..+...+ ...+++|+.|+++++.- ..+.. .+..
T Consensus 310 ~~L~l~~n~l-~~lp----~~-~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~l-~~~~~-------~~~~ 371 (606)
T 3vq2_A 310 QSLSIIRCQL-KQFP----TL-DLPFLKSLTLTMNKGSISFK----KVALPSLSYLDLSRNAL-SFSGC-------CSYS 371 (606)
T ss_dssp SEEEEESCCC-SSCC----CC-CCSSCCEEEEESCSSCEECC----CCCCTTCCEEECCSSCE-EEEEE-------CCHH
T ss_pred CEEEcccccC-cccc----cC-CCCccceeeccCCcCccchh----hccCCCCCEEECcCCcc-CCCcc-------hhhh
Confidence 8888887643 4443 12 67888888888876555442 24678888888887642 22210 0123
Q ss_pred ccccccccEEecCCCCCccccccCcccccccccccccccccccccccccccccccccccccccccceeeecccceeeecC
Q 044755 857 KIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWH 936 (1079)
Q Consensus 857 ~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 936 (1079)
...+++|+.|++++|. ++.++........++.+.. ..+.+.. ......+..+++|+.|++++|.+....
T Consensus 372 ~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l-~~n~l~~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~- 440 (606)
T 3vq2_A 372 DLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDF-QHSTLKR--------VTEFSAFLSLEKLLYLDISYTNTKIDF- 440 (606)
T ss_dssp HHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEEC-TTSEEES--------TTTTTTTTTCTTCCEEECTTSCCEECC-
T ss_pred hccCCcccEeECCCCc-cccchhhccCCCCCCeeEC-CCCccCC--------ccChhhhhccccCCEEECcCCCCCccc-
Confidence 4468899999998875 4444421100000110000 0001100 000123456899999999999888752
Q ss_pred CCCccccccccccceEEEEccCcccccccccchhhhccccceEEEecccccceeecccccccccCCcccccccCeeeccc
Q 044755 937 NQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSG 1016 (1079)
Q Consensus 937 ~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~ 1016 (1079)
+..+..+++|+.|++++| .++....+..+..+++|+.|++++| .++.+ .+..+.. +++|+.|++++
T Consensus 441 ----~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~-------l~~L~~L~Ls~ 506 (606)
T 3vq2_A 441 ----DGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQI-SWGVFDT-------LHRLQLLNMSH 506 (606)
T ss_dssp ----TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEE-CTTTTTT-------CTTCCEEECCS
T ss_pred ----hhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCcc-Chhhhcc-------cccCCEEECCC
Confidence 235667899999999999 4554213466788999999999999 45554 2334444 89999999999
Q ss_pred CCCccccCCCccccCCCCccEEEEecCCCceeeccccccc
Q 044755 1017 LPELKCLYPGMHTSEWPALKLLKVSDCDQVTVFDSELFSF 1056 (1079)
Q Consensus 1017 c~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~lp~~l~~~ 1056 (1079)
|.-....|..+. .+++|++|++++|. ++.+|..+..+
T Consensus 507 N~l~~~~~~~~~--~l~~L~~L~l~~N~-l~~~p~~~~~l 543 (606)
T 3vq2_A 507 NNLLFLDSSHYN--QLYSLSTLDCSFNR-IETSKGILQHF 543 (606)
T ss_dssp SCCSCEEGGGTT--TCTTCCEEECTTSC-CCCEESCGGGS
T ss_pred CcCCCcCHHHcc--CCCcCCEEECCCCc-CcccCHhHhhh
Confidence 854433365554 68999999999976 88888865443
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.7e-28 Score=298.72 Aligned_cols=504 Identities=15% Similarity=0.147 Sum_probs=282.1
Q ss_pred eccCCcCCCCccccccceeEEEecCCCCCCCCC--ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccc
Q 044755 490 VRNEDVWEWPDDIALKECYAISLRGCSIHELPE--GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLL 567 (1079)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~ 567 (1079)
+.+......|. ..+..++++.+++|.+..++. ...+++|++|++.++.... + +...|.++++|++|++++|.+.
T Consensus 19 c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~--~~~~~~~l~~L~~L~Ls~n~l~ 94 (606)
T 3t6q_A 19 CENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-I--HEDTFQSQHRLDTLVLTANPLI 94 (606)
T ss_dssp CTTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-E--CTTTTTTCTTCCEEECTTCCCS
T ss_pred CCCCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce-e--ChhhccCccccCeeeCCCCccc
Confidence 33434444443 346789999999999988753 3479999999999986543 3 4556789999999999999998
Q ss_pred cc-CccccccccccEEeccccccCC--cccccCCcccceeeccCCcCcccC-hhhccCCcccEEcccccccccccChhhh
Q 044755 568 LL-PSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIVMLP-EELGHLTKLRQLDLSNCFKLKVIAPNVI 643 (1079)
Q Consensus 568 ~l-p~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~~~~~l 643 (1079)
.+ |..++.+++|++|++++|.++. +..++++++|++|++++|.+..++ ..+..+++|++|++++| .+..+++..+
T Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 173 (606)
T 3t6q_A 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDM 173 (606)
T ss_dssp EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHH
T ss_pred ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhh
Confidence 76 7789999999999999999988 688999999999999999998763 33445999999999998 7888888889
Q ss_pred hcccccc--eeecccccccccCCCCCchh---------hhcchhhhccCCCCcEEEEEeeCCC-----CCCchhh--h--
Q 044755 644 SRLVRLE--ELYMSNCFVEWDDEGPNSER---------INARLDELMHLPRLTTLEVHVKNDN-----VLPEGFF--A-- 703 (1079)
Q Consensus 644 ~~L~~L~--~L~l~~~~~~~~~~~~~~~~---------~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~--~-- 703 (1079)
+.+++|+ +|++++|.+........... .......+..+.++....+...... .++...+ .
T Consensus 174 ~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~ 253 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253 (606)
T ss_dssp HTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG
T ss_pred hhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhc
Confidence 9999999 78888876542111100000 0000111112222221111111100 0111000 0
Q ss_pred cccceeeeee----------ecCCcccceEeeccccccccccccccccccCCCceeeccCCCCcceecccCCcCCCCCCC
Q 044755 704 RKLERFKISK----------LQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAF 773 (1079)
Q Consensus 704 ~~L~~L~l~~----------~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 773 (1079)
..++.+.+.. +..+++|+.|+++++... .+...+ ..+++|+.|++.++.-.... . .....+
T Consensus 254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l--~~l~~L~~L~l~~n~l~~~~-~-----~~~~~l 324 (606)
T 3t6q_A 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL--VGLSTLKKLVLSANKFENLC-Q-----ISASNF 324 (606)
T ss_dssp SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC--CSCTTCCEEECTTCCCSBGG-G-----GCGGGC
T ss_pred CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh--cccccCCEEECccCCcCcCc-h-----hhhhcc
Confidence 0222222221 233556666666665432 222222 34566666666665321110 0 011345
Q ss_pred CccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccc-hHHhccCCccceEeecccccccccccccccccc
Q 044755 774 PILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFL-LSAAKCLPRLERIAVINCRNIQEIFVVDGEYDA 852 (1079)
Q Consensus 774 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~ 852 (1079)
++|+.|++.++.....+... ..+.+++|++|++++| .+..+.. ...+..+++|+.|+++++.-. .++
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-------- 392 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTG--CLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLK-------- 392 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSS--TTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSCE-EEC--------
T ss_pred CcCCEEECCCCCcccccchh--hhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcCC-cCC--------
Confidence 66666666665322222111 1334566666666663 2333321 123345566666666655322 111
Q ss_pred ccccccccccccEEecCCCCCccccccCcccccccccccccccccccccccccccccccccccccccccceeeeccccee
Q 044755 853 IDHQKIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIE 932 (1079)
Q Consensus 853 ~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 932 (1079)
+.....+++|+.|+++++.--...+.. ....+.......+... ......+..+..+++|++|++++|.+.
T Consensus 393 -~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~~l~~L~~L~l~~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 393 -TEAFKECPQLELLDLAFTRLKVKDAQS-----PFQNLHLLKVLNLSHS----LLDISSEQLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp -TTTTTTCTTCSEEECTTCCEECCTTCC-----TTTTCTTCCEEECTTC----CCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred -HHHhcCCccCCeEECCCCcCCCcccch-----hhhCcccCCEEECCCC----ccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence 112233555666665554311111000 0000000000000000 000001123345788888888888765
Q ss_pred eecCCCCccccccccccceEEEEccCcccccccccchhhhccccceEEEecccccceeecccccccccCCcccccccCee
Q 044755 933 KIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSL 1012 (1079)
Q Consensus 933 ~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L 1012 (1079)
.... .....+..+++|+.|++++| +++.+ ++..+..+++|+.|++++|. +..+ .++.+.+ +++| .|
T Consensus 463 ~~~~--~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~l~~-------l~~L-~L 528 (606)
T 3t6q_A 463 KGNI--QKTNSLQTLGRLEILVLSFC-DLSSI-DQHAFTSLKMMNHVDLSHNR-LTSS-SIEALSH-------LKGI-YL 528 (606)
T ss_dssp GGEE--CSSCGGGGCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSSC-CCGG-GGGGGTT-------CCSC-EE
T ss_pred cccc--ccchhhccCCCccEEECCCC-ccCcc-ChhhhccccCCCEEECCCCc-cCcC-ChhHhCc-------cccc-EE
Confidence 4200 01134667888888888888 56655 34567778888888888874 4333 2334433 6777 88
Q ss_pred ecccCCCccccCCCccccCCCCccEEEEecCCC
Q 044755 1013 RLSGLPELKCLYPGMHTSEWPALKLLKVSDCDQ 1045 (1079)
Q Consensus 1013 ~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~ 1045 (1079)
+++++. ++.++.... ..+++|++|++++||-
T Consensus 529 ~L~~N~-l~~~~~~~~-~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 529 NLASNH-ISIILPSLL-PILSQQRTINLRQNPL 559 (606)
T ss_dssp ECCSSC-CCCCCGGGH-HHHHTSSEEECTTCCE
T ss_pred ECcCCc-ccccCHhhc-ccCCCCCEEeCCCCCc
Confidence 888864 445544321 2468888888888763
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=5.6e-28 Score=294.08 Aligned_cols=478 Identities=17% Similarity=0.137 Sum_probs=282.6
Q ss_pred eEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccccc-CccccccccccEEeccc
Q 044755 508 YAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVE 586 (1079)
Q Consensus 508 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~ 586 (1079)
+++...+..+..+|..+. ..++.|++.++... .+ +...|.++++|++|++++|.+..+ |..++++++|++|+|++
T Consensus 15 ~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~-~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLP-NSTECLEFSFNVLP-TI--QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTCCCS-EE--CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCcccCcCCCC-CcCcEEEccCCccC-cC--ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 456666777777886553 47999999998654 34 556679999999999999999876 77899999999999999
Q ss_pred cccCC--cccccCCcccceeeccCCcCccc-ChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccC
Q 044755 587 CMLDD--IAIIGKLKNLEILSFWGSVIVML-PEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDD 663 (1079)
Q Consensus 587 ~~l~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 663 (1079)
|.+.. |..++++++|++|++++|.+..+ |..++++++|++|++++| .+..++...+..+++|++|++++|.+.
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~--- 166 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIH--- 166 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCC---
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCccc---
Confidence 99877 67899999999999999999988 567899999999999998 677764333566999999999998764
Q ss_pred CCCCchhhhcchhhhccCCCCc--EEEEEeeCCCCCCchhh-hcccceeeeeee--------------------------
Q 044755 664 EGPNSERINARLDELMHLPRLT--TLEVHVKNDNVLPEGFF-ARKLERFKISKL-------------------------- 714 (1079)
Q Consensus 664 ~~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~-------------------------- 714 (1079)
......+..+++|+ .|+++.+....+++..+ ...|+.+.+...
T Consensus 167 --------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 167 --------YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp --------EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred --------ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence 23456677888888 77777777666554433 234444443320
Q ss_pred ----------cCCc--ccceEeeccccccccccccccccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeecc
Q 044755 715 ----------QGIK--DVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLY 782 (1079)
Q Consensus 715 ----------~~l~--~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 782 (1079)
.++. +++.|++.++....-.... ...+++|+.|+++++.- ..+ ......+++|+.|++.
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l-~~l------p~~l~~l~~L~~L~l~ 309 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT--FHCFSGLQELDLTATHL-SEL------PSGLVGLSTLKKLVLS 309 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT--TTTCTTCSEEECTTSCC-SCC------CSSCCSCTTCCEEECT
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHH--hccccCCCEEeccCCcc-CCC------ChhhcccccCCEEECc
Confidence 0011 4455555554322111111 13456677777766532 111 1112456677777776
Q ss_pred ccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeecccccccccccccccccccccccccccc
Q 044755 783 NLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQ 862 (1079)
Q Consensus 783 ~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~ 862 (1079)
++. +..+.. .....+++|++|++++|.....+++ ..+..+++|++|+++++.-..... .+.....+++
T Consensus 310 ~n~-l~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~~~l~~ 377 (606)
T 3t6q_A 310 ANK-FENLCQ--ISASNFPSLTHLSIKGNTKRLELGT-GCLENLENLRELDLSHDDIETSDC--------CNLQLRNLSH 377 (606)
T ss_dssp TCC-CSBGGG--GCGGGCTTCSEEECCSCSSCCBCCS-STTTTCTTCCEEECCSSCCCEEEE--------STTTTTTCTT
T ss_pred cCC-cCcCch--hhhhccCcCCEEECCCCCcccccch-hhhhccCcCCEEECCCCccccccC--------cchhcccCCC
Confidence 652 322211 1234567777777776544334433 234456677777776654221110 0112345677
Q ss_pred ccEEecCCCCCccccccCcccccccccccccccccccccccccccccccccccccccccceeeecccceeeecCCCCccc
Q 044755 863 LRTLCLGSLPELTSFCCEVKKNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVA 942 (1079)
Q Consensus 863 L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~ 942 (1079)
|+.|+++++. +..+.... ...+.......+.. +..........+..+++|+.|++++|.+... +..
T Consensus 378 L~~L~l~~n~-l~~~~~~~-----~~~l~~L~~L~l~~---n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~ 443 (606)
T 3t6q_A 378 LQSLNLSYNE-PLSLKTEA-----FKECPQLELLDLAF---TRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS-----SEQ 443 (606)
T ss_dssp CCEEECCSCS-CEEECTTT-----TTTCTTCSEEECTT---CCEECCTTCCTTTTCTTCCEEECTTCCCBTT-----CTT
T ss_pred CCEEECCCCc-CCcCCHHH-----hcCCccCCeEECCC---CcCCCcccchhhhCcccCCEEECCCCccCCc-----CHH
Confidence 7777777664 22221110 00000000000000 0000000001134466777777777765543 223
Q ss_pred cccccccceEEEEccCccccc--ccccchhhhccccceEEEecccccceeecccccccccCCcccccccCeeecccCCCc
Q 044755 943 MFLCFQNLTRLILSKCPKLKY--IFSASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPEL 1020 (1079)
Q Consensus 943 ~l~~l~~L~~L~i~~c~~l~~--l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L 1020 (1079)
.+..+++|++|++++|. ++. +.....+..+++|+.|++++|. ++.+. +..+.. +++|+.|+++++.-.
T Consensus 444 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~-------l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSID-QHAFTS-------LKMMNHVDLSHNRLT 513 (606)
T ss_dssp TTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEEC-TTTTTT-------CTTCCEEECCSSCCC
T ss_pred HHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc-cCccC-hhhhcc-------ccCCCEEECCCCccC
Confidence 44556777777777763 332 1122446667777777777763 44431 233333 677777777776433
Q ss_pred cccCCCccccCCCCccEEEEecCCCceeec
Q 044755 1021 KCLYPGMHTSEWPALKLLKVSDCDQVTVFD 1050 (1079)
Q Consensus 1021 ~~l~~~~~~~~l~sL~~L~i~~C~~L~~lp 1050 (1079)
...|..+. .+++| .|++++|. ++.+|
T Consensus 514 ~~~~~~l~--~l~~L-~L~L~~N~-l~~~~ 539 (606)
T 3t6q_A 514 SSSIEALS--HLKGI-YLNLASNH-ISIIL 539 (606)
T ss_dssp GGGGGGGT--TCCSC-EEECCSSC-CCCCC
T ss_pred cCChhHhC--ccccc-EEECcCCc-ccccC
Confidence 33334333 56677 77776654 44443
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=3.5e-28 Score=302.32 Aligned_cols=486 Identities=18% Similarity=0.074 Sum_probs=289.6
Q ss_pred ccceeEEEecCCCCCCCCC-----ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCcccccccc
Q 044755 504 LKECYAISLRGCSIHELPE-----GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVN 578 (1079)
Q Consensus 504 ~~~~~~l~l~~~~~~~l~~-----~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~ 578 (1079)
...++++.+.+|.+..... ...+++|+.|++.++...... + +..+++|++|++++|.+...++.++.+++
T Consensus 150 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~---~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~ 224 (768)
T 3rgz_A 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--D---VSRCVNLEFLDVSSNNFSTGIPFLGDCSA 224 (768)
T ss_dssp CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC--B---CTTCTTCCEEECCSSCCCSCCCBCTTCCS
T ss_pred CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccC--C---cccCCcCCEEECcCCcCCCCCcccccCCC
Confidence 3456666666666544322 224666666666665433222 1 25667777777777776654444777777
Q ss_pred ccEEeccccccCC--cccccCCcccceeeccCCcCcc-cChhhccCCcccEEcccccccccccChhhhhc-ccccceeec
Q 044755 579 LQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIVM-LPEELGHLTKLRQLDLSNCFKLKVIAPNVISR-LVRLEELYM 654 (1079)
Q Consensus 579 L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~-L~~L~~L~l 654 (1079)
|++|++++|.+.. |..++++++|++|++++|.+.. +|.. .+++|++|++++|.-...+|.. +.. +++|++|++
T Consensus 225 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~-~~~~~~~L~~L~L 301 (768)
T 3rgz_A 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDF-LSGACDTLTGLDL 301 (768)
T ss_dssp CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCC-SCTTCTTCSEEEC
T ss_pred CCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHH-HHhhcCcCCEEEC
Confidence 7777777777664 5667777777777777776553 3332 6677777777776322255544 334 377777777
Q ss_pred ccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCC-CCCchh--hhcccceeeeee--e--------cCCc-cc
Q 044755 655 SNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDN-VLPEGF--FARKLERFKISK--L--------QGIK-DV 720 (1079)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~--~~~~L~~L~l~~--~--------~~l~-~L 720 (1079)
++|.+. +..+..++.+++|+.|+++.+... .+|... .+++|+.|.+.. + ..++ +|
T Consensus 302 s~n~l~-----------~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L 370 (768)
T 3rgz_A 302 SGNHFY-----------GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370 (768)
T ss_dssp CSSEEE-----------ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTC
T ss_pred cCCcCC-----------CccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCC
Confidence 776553 234566777888888888877665 556442 236666666543 1 1133 67
Q ss_pred ceEeeccccccccccccccccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCC
Q 044755 721 EYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSF 800 (1079)
Q Consensus 721 ~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~ 800 (1079)
+.|+++++.........+....+++|+.|++.+|.....+ ......+++|+.|+++++.-...+ +...+.+
T Consensus 371 ~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------p~~l~~l~~L~~L~Ls~N~l~~~~---p~~l~~l 441 (768)
T 3rgz_A 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI------PPTLSNCSELVSLHLSFNYLSGTI---PSSLGSL 441 (768)
T ss_dssp SEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC------CGGGGGCTTCCEEECCSSEEESCC---CGGGGGC
T ss_pred cEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc------CHHHhcCCCCCEEECcCCcccCcc---cHHHhcC
Confidence 7777777654443333332223567777777776422111 111145677778887775322122 1224567
Q ss_pred CCcceEEeecCCCCCcccchHHhccCCccceEeeccccccccccccccccccccccccccccccEEecCCCCCccccccC
Q 044755 801 NELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCE 880 (1079)
Q Consensus 801 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~ 880 (1079)
++|+.|++++|.-...+|. .+..+++|+.|++++|.-...++ .....+++|+.|+|++|.-...++..
T Consensus 442 ~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p----------~~l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTGEIP----------SGLSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp TTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCCC----------GGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred CCCCEEECCCCcccCcCCH--HHcCCCCceEEEecCCcccCcCC----------HHHhcCCCCCEEEccCCccCCcCChH
Confidence 7788888877643333432 34567778888777765433332 23445777888888777533233321
Q ss_pred cccccccccccccccccccccccccccccccccccccccccceeeecccceeeecCCCC---------------------
Q 044755 881 VKKNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQL--------------------- 939 (1079)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~--------------------- 939 (1079)
...+.......+.. .......+..+..+++|+.|++++|.+....+..+
T Consensus 510 ------~~~l~~L~~L~L~~----N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~ 579 (768)
T 3rgz_A 510 ------IGRLENLAILKLSN----NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579 (768)
T ss_dssp ------GGGCTTCCEEECCS----SCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEE
T ss_pred ------HhcCCCCCEEECCC----CcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccc
Confidence 11111111111111 01111233456678999999999998773211000
Q ss_pred --------------------------------------------ccccccccccceEEEEccCcccccccccchhhhccc
Q 044755 940 --------------------------------------------PVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEH 975 (1079)
Q Consensus 940 --------------------------------------------~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~ 975 (1079)
.+..+..+++|+.|++++| +++.. .+..+..+++
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~-ip~~l~~l~~ 657 (768)
T 3rgz_A 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGY-IPKEIGSMPY 657 (768)
T ss_dssp CCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSC-CCGGGGGCTT
T ss_pred cccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC-ccccc-CCHHHhcccc
Confidence 0112445688999999998 55544 2467888999
Q ss_pred cceEEEecccccceeecccccccccCCcccccccCeeecccCCCccccCCCccccCCCCccEEEEecCCCceeeccc
Q 044755 976 LQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGMHTSEWPALKLLKVSDCDQVTVFDSE 1052 (1079)
Q Consensus 976 L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~lp~~ 1052 (1079)
|+.|++++|.--..+ |..+.+ +++|+.|+++++.-...+|..+. .+++|++|++++|+---.+|.+
T Consensus 658 L~~L~Ls~N~l~g~i--p~~l~~-------L~~L~~LdLs~N~l~g~ip~~l~--~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 658 LFILNLGHNDISGSI--PDEVGD-------LRGLNILDLSSNKLDGRIPQAMS--ALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCEEECCSSCCCSCC--CGGGGG-------CTTCCEEECCSSCCEECCCGGGG--GCCCCSEEECCSSEEEEECCSS
T ss_pred CCEEeCcCCccCCCC--ChHHhC-------CCCCCEEECCCCcccCcCChHHh--CCCCCCEEECcCCcccccCCCc
Confidence 999999998644455 555555 89999999999876667888765 6899999999997644556653
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1.1e-27 Score=295.41 Aligned_cols=512 Identities=18% Similarity=0.178 Sum_probs=297.0
Q ss_pred eccCCcCCCCccccccceeEEEecCCCCCCCCC--ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccc
Q 044755 490 VRNEDVWEWPDDIALKECYAISLRGCSIHELPE--GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLL 567 (1079)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~ 567 (1079)
+.+......|. ..+..++++.++++.+..++. ...+++|++|++.++... .+ +...|.++++|++|++++|.+.
T Consensus 11 cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~--~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 11 CSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KL--EPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp CCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CC--CTTHHHHCTTCCEEECCSSCCC
T ss_pred CCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-cc--CHHHHhcccCcCEEECCCCccC
Confidence 33334444443 245789999999999988875 347899999999987543 33 5566789999999999999999
Q ss_pred ccCc-cccccccccEEeccccccCC--cccccCCcccceeeccCCcCccc-ChhhccCCcccEEcccccccccccChhhh
Q 044755 568 LLPS-SIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIVML-PEELGHLTKLRQLDLSNCFKLKVIAPNVI 643 (1079)
Q Consensus 568 ~lp~-~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l 643 (1079)
.+|. .++.+++|++|++++|.+.. +..++++++|++|++++|.+... |..++++++|++|++++| .+..+++..+
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 165 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEEL 165 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHH
T ss_pred ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHh
Confidence 9887 58999999999999999877 46799999999999999988766 456788999999999987 6777776655
Q ss_pred h--cccccceeecccccccccCCCCCch----------------------------------------hhhcchhhhccC
Q 044755 644 S--RLVRLEELYMSNCFVEWDDEGPNSE----------------------------------------RINARLDELMHL 681 (1079)
Q Consensus 644 ~--~L~~L~~L~l~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~l~~l 681 (1079)
+ .+++|++|++++|.+.......... -.......+..+
T Consensus 166 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l 245 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245 (680)
T ss_dssp GGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGG
T ss_pred hccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhcc
Confidence 4 4578888888877553211100000 000011223333
Q ss_pred --CCCcEEEEEeeCCCCCCchhh--hcccceeeeee----------ecCCcccceEeecccccccc----cc---ccccc
Q 044755 682 --PRLTTLEVHVKNDNVLPEGFF--ARKLERFKISK----------LQGIKDVEYLCLDKSQDVKN----VL---FDLDR 740 (1079)
Q Consensus 682 --~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~----------~~~l~~L~~L~L~~~~~~~~----~~---~~l~~ 740 (1079)
++|+.|+++.+....++...+ +++|+.|.+.. +.++++|+.|++.++..... .+ .....
T Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~ 325 (680)
T 1ziw_A 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325 (680)
T ss_dssp GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhc
Confidence 348888888877666554322 36677776653 34467788888875432110 00 11112
Q ss_pred cccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeecccccc-ccccccCc------------------------C
Q 044755 741 EGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIK-LERICQDR------------------------L 795 (1079)
Q Consensus 741 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~i~~~~------------------------~ 795 (1079)
..+++|+.|++.++.-.. + .......+++|+.|+++++.. ...+.... .
T Consensus 326 ~~l~~L~~L~l~~n~l~~-~-----~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~ 399 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPG-I-----KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399 (680)
T ss_dssp TTCTTCCEEECCSCCBCC-C-----CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT
T ss_pred ccCCCCCEEECCCCccCC-C-----ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh
Confidence 456778888877764211 1 001114566777777765421 11111111 1
Q ss_pred CcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeeccccccccccccccccccccccccccccccEEecCCCCC--
Q 044755 796 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPE-- 873 (1079)
Q Consensus 796 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~-- 873 (1079)
....+++|+.|+++++.-...+++ ..+..+++|+.|++++|.- ..+. +.....+++|+.|++.++.-
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~Ls~n~l-~~~~---------~~~~~~~~~L~~L~l~~n~l~~ 468 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTG-QEWRGLENIFEIYLSYNKY-LQLT---------RNSFALVPSLQRLMLRRVALKN 468 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCS-GGGTTCTTCCEEECCSCSE-EECC---------TTTTTTCTTCCEEECTTSCCBC
T ss_pred hhhCCCCCCEEeCCCCcCccccCc-ccccCcccccEEecCCCCc-ceeC---------hhhhhcCcccccchhccccccc
Confidence 122344555555554322112221 2233445555555554431 1111 11233456677776665431
Q ss_pred ccccccCcccccccccccccccccccccccccccccccccccccccccceeeecccceeeecCCCCcc---ccccccccc
Q 044755 874 LTSFCCEVKKNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPV---AMFLCFQNL 950 (1079)
Q Consensus 874 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~---~~l~~l~~L 950 (1079)
+..++.. ...+.......+.. + .........+..+++|+.|++++|.++.+|....|. ..+..+++|
T Consensus 469 ~~~~p~~------~~~l~~L~~L~Ls~---N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L 538 (680)
T 1ziw_A 469 VDSSPSP------FQPLRNLTILDLSN---N-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538 (680)
T ss_dssp TTCSSCT------TTTCTTCCEEECCS---S-CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred cccCCcc------cccCCCCCEEECCC---C-CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC
Confidence 1111110 00000000000000 0 000001112345778888888888777776543322 236677888
Q ss_pred eEEEEccCcccccccccchhhhccccceEEEecccccceeecccccccccCCcccccccCeeecccCCCccccCCCcccc
Q 044755 951 TRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGMHTS 1030 (1079)
Q Consensus 951 ~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~ 1030 (1079)
+.|++++| +++.+ +...+.++++|+.|+++++ .++.+. +..+.+ +++|+.|+++++ .++.++......
T Consensus 539 ~~L~L~~N-~l~~i-~~~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~-------l~~L~~L~L~~N-~l~~~~~~~~~~ 606 (680)
T 1ziw_A 539 HILNLESN-GFDEI-PVEVFKDLFELKIIDLGLN-NLNTLP-ASVFNN-------QVSLKSLNLQKN-LITSVEKKVFGP 606 (680)
T ss_dssp CEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTT-------CTTCCEEECTTS-CCCBCCHHHHHH
T ss_pred CEEECCCC-CCCCC-CHHHcccccCcceeECCCC-CCCcCC-HhHhCC-------CCCCCEEECCCC-cCCccChhHhcc
Confidence 88888887 56655 3455777888888888776 455541 122233 678888888885 566666542211
Q ss_pred CCCCccEEEEecCCC
Q 044755 1031 EWPALKLLKVSDCDQ 1045 (1079)
Q Consensus 1031 ~l~sL~~L~i~~C~~ 1045 (1079)
.+++|+.|+++++|-
T Consensus 607 ~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 607 AFRNLTELDMRFNPF 621 (680)
T ss_dssp HHTTCSEEECTTCCC
T ss_pred cccccCEEEccCCCc
Confidence 367888888877553
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1.9e-27 Score=293.38 Aligned_cols=500 Identities=18% Similarity=0.177 Sum_probs=298.3
Q ss_pred eEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccccc-CccccccccccEEeccc
Q 044755 508 YAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVE 586 (1079)
Q Consensus 508 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~ 586 (1079)
+.+..+++.+..+|.... +++++|++.++... .+ +...|.++++|++|++++|.+..+ |..++++++|++|+|++
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~-~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLR-RL--PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCC-CC--CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCCC-Cc--CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 356777777888887654 78999999987643 44 666789999999999999999987 66789999999999999
Q ss_pred cccCC-c-ccccCCcccceeeccCCcCcccC-hhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccC
Q 044755 587 CMLDD-I-AIIGKLKNLEILSFWGSVIVMLP-EELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDD 663 (1079)
Q Consensus 587 ~~l~~-~-~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 663 (1079)
|.++. | ..++++.+|++|++++|.+..+| ..++++++|++|++++| .+...++..++++++|++|++++|.+.
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~--- 158 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQ--- 158 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCC---
T ss_pred CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCccc---
Confidence 99988 4 46999999999999999998886 56999999999999998 677777777899999999999998764
Q ss_pred CCCCchhhhcchhhh--ccCCCCcEEEEEeeCCCCCCchhh--hcc---------------------------cceeeee
Q 044755 664 EGPNSERINARLDEL--MHLPRLTTLEVHVKNDNVLPEGFF--ARK---------------------------LERFKIS 712 (1079)
Q Consensus 664 ~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~--~~~---------------------------L~~L~l~ 712 (1079)
......+ ..+++|+.|+++.+....++...+ ..+ |+.|.+.
T Consensus 159 --------~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~ 230 (680)
T 1ziw_A 159 --------ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230 (680)
T ss_dssp --------CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred --------ccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence 1122222 245788888888777665544321 123 3333322
Q ss_pred e----------ecCC--cccceEeeccccccccccccccccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceee
Q 044755 713 K----------LQGI--KDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLN 780 (1079)
Q Consensus 713 ~----------~~~l--~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 780 (1079)
. +.++ ++|+.|+++++.........+ ..+++|+.|++.++.-.. .. ......+++|+.|+
T Consensus 231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~-~~-----~~~~~~l~~L~~L~ 302 (680)
T 1ziw_A 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQH-LF-----SHSLHGLFNVRYLN 302 (680)
T ss_dssp TSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSCCBSE-EC-----TTTTTTCTTCCEEE
T ss_pred CCcccccChhHhhccCcCCCCEEECCCCCcCccCcccc--cCcccccEeeCCCCccCc-cC-----hhhhcCCCCccEEe
Confidence 1 1112 226666666554322111111 345667777776653211 10 01124566666666
Q ss_pred ccccccccc-----ccc-CcCCcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeecccc----------------
Q 044755 781 LYNLIKLER-----ICQ-DRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR---------------- 838 (1079)
Q Consensus 781 l~~~~~l~~-----i~~-~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~---------------- 838 (1079)
+.++..-.. ++. .......+++|++|++++| .+..+++ ..+..+++|++|++++|.
T Consensus 303 L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~ 380 (680)
T 1ziw_A 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380 (680)
T ss_dssp CTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTT
T ss_pred ccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhccccc
Confidence 654321110 000 0112345677777777764 3444433 234567777777777653
Q ss_pred -ccccccccccccccc-cccccccccccEEecCCCCCccccccCc-cccccccccccccccccc--------------cc
Q 044755 839 -NIQEIFVVDGEYDAI-DHQKIEFSQLRTLCLGSLPELTSFCCEV-KKNREAQGMHETCSNKIS--------------SF 901 (1079)
Q Consensus 839 -~l~~l~~~~~~~~~~-~~~~~~~~~L~~L~L~~c~~L~~l~~~~-~~~~~~~~~~~~~~~~~~--------------~~ 901 (1079)
.++.+.......... +.....+++|+.|+++++.--..++... .....++.+.. ..+.+. .+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL-SYNKYLQLTRNSFALVPSLQRL 459 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC-CSCSEEECCTTTTTTCTTCCEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec-CCCCcceeChhhhhcCcccccc
Confidence 122222222221111 2233456677777776654222222100 00000000000 000000 00
Q ss_pred --cccccc-ccccccccccccccceeeecccceeeecCCCCccccccccccceEEEEccCcccccccc-------cchhh
Q 044755 902 --EDKLDI-SSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFS-------ASMLG 971 (1079)
Q Consensus 902 --~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~-------~~~~~ 971 (1079)
...... ....+..+..+++|+.|++++|+++.+ +...+..+++|+.|++++| +++.+.. ...+.
T Consensus 460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~ 533 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI-----NDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLK 533 (680)
T ss_dssp ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTT
T ss_pred hhccccccccccCCcccccCCCCCEEECCCCCCCcC-----ChhhhccccccCEEeCCCC-CccccchhhccCCcchhhc
Confidence 000000 011223344567777777777776654 2334566777888888877 4554411 12356
Q ss_pred hccccceEEEecccccceeecccccccccCCcccccccCeeecccCCCccccCCCccccCCCCccEEEEecCCCceeecc
Q 044755 972 SFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGMHTSEWPALKLLKVSDCDQVTVFDS 1051 (1079)
Q Consensus 972 ~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~lp~ 1051 (1079)
++++|+.|++++| .++.+. +..+.+ +++|+.|++++ +.++.+|.+.. ..+++|+.|+++++ +++.+|.
T Consensus 534 ~l~~L~~L~L~~N-~l~~i~-~~~~~~-------l~~L~~L~Ls~-N~l~~l~~~~~-~~l~~L~~L~L~~N-~l~~~~~ 601 (680)
T 1ziw_A 534 GLSHLHILNLESN-GFDEIP-VEVFKD-------LFELKIIDLGL-NNLNTLPASVF-NNQVSLKSLNLQKN-LITSVEK 601 (680)
T ss_dssp TCTTCCEEECCSS-CCCCCC-TTTTTT-------CTTCCEEECCS-SCCCCCCTTTT-TTCTTCCEEECTTS-CCCBCCH
T ss_pred CCCCCCEEECCCC-CCCCCC-HHHccc-------ccCcceeECCC-CCCCcCCHhHh-CCCCCCCEEECCCC-cCCccCh
Confidence 7778888888777 455441 122333 78888999877 46778877642 35789999999886 5777765
Q ss_pred c
Q 044755 1052 E 1052 (1079)
Q Consensus 1052 ~ 1052 (1079)
.
T Consensus 602 ~ 602 (680)
T 1ziw_A 602 K 602 (680)
T ss_dssp H
T ss_pred h
Confidence 4
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1.6e-27 Score=299.52 Aligned_cols=492 Identities=17% Similarity=0.158 Sum_probs=306.4
Q ss_pred EEeccCCcCCCCccccccceeEEEecCCCCCCCCC--ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcc
Q 044755 488 VLVRNEDVWEWPDDIALKECYAISLRGCSIHELPE--GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQ 565 (1079)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 565 (1079)
+.+.+......|. .+..++++.+++|.+..+.. ...+++|+.|++.++.....+ +...|.++++|++|+|++|.
T Consensus 9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i--~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI--DKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEE--CTTTTSSCTTCCEEECTTCC
T ss_pred EEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcccc--CHHHhcCCCCCCEEECCCCc
Confidence 3444455555565 67899999999999987643 348999999999998666666 67778999999999999999
Q ss_pred cccc-CccccccccccEEeccccccCC--ccc--ccCCcccceeeccCCcCccc--ChhhccCCcccEEccccccccccc
Q 044755 566 LLLL-PSSIDLLVNLQTLCLVECMLDD--IAI--IGKLKNLEILSFWGSVIVML--PEELGHLTKLRQLDLSNCFKLKVI 638 (1079)
Q Consensus 566 i~~l-p~~i~~L~~L~~L~L~~~~l~~--~~~--i~~L~~L~~L~l~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~ 638 (1079)
+..+ |..++.+++|++|+|++|.+.. |.. ++++++|++|++++|.+..+ +..++++++|++|++++| .+...
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~ 163 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLV 163 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCee
Confidence 9976 8889999999999999999876 544 99999999999999988876 357999999999999997 66666
Q ss_pred Chhhhhcc--cccceeecccccccccCCCCCchhhhcchhhhccCC------CCcEEEEEeeCCCC-CCchhh----hcc
Q 044755 639 APNVISRL--VRLEELYMSNCFVEWDDEGPNSERINARLDELMHLP------RLTTLEVHVKNDNV-LPEGFF----ARK 705 (1079)
Q Consensus 639 ~~~~l~~L--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~~-~~~~~~----~~~ 705 (1079)
.+..++.+ ++|+.|++++|.+... ....+..+. .|+.|+++.+.... .+..+. ...
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~-----------~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~ 232 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSR-----------VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCC-----------CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCC
T ss_pred CHHHcccccCCccceEECCCCccccc-----------cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccc
Confidence 66667777 8999999998876511 111122222 48888888775432 222111 122
Q ss_pred cceeeeee-------------------ecC--CcccceEeeccccccccccccccccccCCCceeeccCCCCcceecccC
Q 044755 706 LERFKISK-------------------LQG--IKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSK 764 (1079)
Q Consensus 706 L~~L~l~~-------------------~~~--l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~ 764 (1079)
+..+.+.. +.+ .++|+.|+++++.........+ ..+++|+.|++.++.-.. +..
T Consensus 233 l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~-~~~-- 307 (844)
T 3j0a_A 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYNKINK-IAD-- 307 (844)
T ss_dssp BSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESCCCCE-ECT--
T ss_pred ccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCCcCCC-CCh--
Confidence 33333220 111 2567777777665332221112 456777777777764221 111
Q ss_pred CcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeecccccccccc
Q 044755 765 ERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIF 844 (1079)
Q Consensus 765 ~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~ 844 (1079)
.....+++|+.|+++++ .+..+.. .....+++|+.|+++++ .+..+++ ..+..+++|+.|+++++. ++.++
T Consensus 308 ---~~~~~l~~L~~L~Ls~N-~l~~~~~--~~~~~l~~L~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~i~ 378 (844)
T 3j0a_A 308 ---EAFYGLDNLQVLNLSYN-LLGELYS--SNFYGLPKVAYIDLQKN-HIAIIQD-QTFKFLEKLQTLDLRDNA-LTTIH 378 (844)
T ss_dssp ---TTTTTCSSCCEEEEESC-CCSCCCS--CSCSSCTTCCEEECCSC-CCCCCCS-SCSCSCCCCCEEEEETCC-SCCCS
T ss_pred ---HHhcCCCCCCEEECCCC-CCCccCH--HHhcCCCCCCEEECCCC-CCCccCh-hhhcCCCCCCEEECCCCC-CCccc
Confidence 11245677777777765 3333311 12345677777777774 4555543 234556777777777653 22221
Q ss_pred ccccccccccccccccccccEEecCCCCCccccccCcccccccc----------------cccccccccccccccccccc
Q 044755 845 VVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEVKKNREAQ----------------GMHETCSNKISSFEDKLDIS 908 (1079)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~ 908 (1079)
.+++|+.|.++++. ++.++........+. .++... ...+..+.-..
T Consensus 379 --------------~~~~L~~L~l~~N~-l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~---~L~Ls~N~l~~ 440 (844)
T 3j0a_A 379 --------------FIPSIPDIFLSGNK-LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQ---ILILNQNRFSS 440 (844)
T ss_dssp --------------SCCSCSEEEEESCC-CCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCC---EEEEESCCCCC
T ss_pred --------------CCCCcchhccCCCC-cccccccccccceeecccCccccCchhhhhhcCCccc---eeeCCCCcccc
Confidence 14455555554432 222221100000000 000000 00000000000
Q ss_pred cccccccccccccceeeecccceeeecCCCCccccccccccceEEEEccCcccccccccchhhhccccceEEEecccccc
Q 044755 909 SALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCKGLQ 988 (1079)
Q Consensus 909 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~ 988 (1079)
.........+++|+.|++++|.++..|........+..+++|+.|++++| +++.+ ++..+..+++|+.|++++| .++
T Consensus 441 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~ 517 (844)
T 3j0a_A 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSL-PPGVFSHLTALRGLSLNSN-RLT 517 (844)
T ss_dssp CCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTC-CTTSSSSCCSCSEEEEESC-CCS
T ss_pred cccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-ccccc-ChhHccchhhhheeECCCC-CCC
Confidence 00001123367888888888888777765555556778889999999988 67776 4466778889999999888 465
Q ss_pred eeecccccccccCCcccccccCeeecccCCCccccCCCccccCCCCccEEEEecCCC
Q 044755 989 EIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGMHTSEWPALKLLKVSDCDQ 1045 (1079)
Q Consensus 989 ~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~ 1045 (1079)
.+.. ..+ .++|+.|+++++ .++.++.. .+++|+.|++++.|-
T Consensus 518 ~l~~-~~~---------~~~L~~L~Ls~N-~l~~~~~~----~~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 518 VLSH-NDL---------PANLEILDISRN-QLLAPNPD----VFVSLSVLDITHNKF 559 (844)
T ss_dssp SCCC-CCC---------CSCCCEEEEEEE-CCCCCCSC----CCSSCCEEEEEEECC
T ss_pred ccCh-hhh---------hccccEEECCCC-cCCCCChh----HhCCcCEEEecCCCc
Confidence 5511 111 378899999884 45555443 357899999987553
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.1e-27 Score=285.55 Aligned_cols=459 Identities=18% Similarity=0.190 Sum_probs=278.6
Q ss_pred eccCCcCCCCccccccceeEEEecCCCCCCCCC--ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccc
Q 044755 490 VRNEDVWEWPDDIALKECYAISLRGCSIHELPE--GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLL 567 (1079)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~ 567 (1079)
+.+......|. ..+..++++.+++|.+..++. ...+++|++|++.++.. ..+ +...|.++++|++|++++|.++
T Consensus 14 c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~i--~~~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 14 CMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTI--EDGAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp CCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC-CEE--CTTTTTTCTTCCEEECTTCCCC
T ss_pred eCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcC-Ccc--CcccccCchhCCEEeCcCCcCC
Confidence 33444444453 346789999999999987764 45899999999999854 345 6677899999999999999999
Q ss_pred ccC-ccccccccccEEeccccccCC-c-ccccCCcccceeeccCCcCcc--cChhhccCCcccEEcccccccccccChhh
Q 044755 568 LLP-SSIDLLVNLQTLCLVECMLDD-I-AIIGKLKNLEILSFWGSVIVM--LPEELGHLTKLRQLDLSNCFKLKVIAPNV 642 (1079)
Q Consensus 568 ~lp-~~i~~L~~L~~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~~~~~ 642 (1079)
.+| ..++.+++|++|++++|.++. + ..++++++|++|++++|.+.. +|..++++++|++|++++| .+..+++..
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~ 168 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTD 168 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGG
T ss_pred ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHH
Confidence 875 679999999999999999888 3 369999999999999998875 6999999999999999998 788887777
Q ss_pred hhccccc----ceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCC--CCchhh-hcc----------
Q 044755 643 ISRLVRL----EELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNV--LPEGFF-ARK---------- 705 (1079)
Q Consensus 643 l~~L~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~-~~~---------- 705 (1079)
++.+++| +.|++++|.+... ....+..+ +|+.|+++.+.... ++..+. +..
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~~~-----------~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 236 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMNFI-----------QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEE-----------CTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred ccchhccchhhhhcccCCCCceec-----------CHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccc
Confidence 8889888 8889888866411 11222222 45556555432110 000000 011
Q ss_pred ----------------------cceeeeee-----------ecCCcccceEeeccccccccccccccccccCCCceeecc
Q 044755 706 ----------------------LERFKISK-----------LQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQ 752 (1079)
Q Consensus 706 ----------------------L~~L~l~~-----------~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~ 752 (1079)
++.+.+.. +..+++|+.|++.++... .+...+ ..+ +|+.|++.
T Consensus 237 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~--~~~-~L~~L~l~ 312 (570)
T 2z63_A 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFS--YNF-GWQHLELV 312 (570)
T ss_dssp CCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCC--SCC-CCSEEEEE
T ss_pred ccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhh--ccC-CccEEeec
Confidence 11111110 112344444444443221 111111 122 44444444
Q ss_pred CCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccc-hHHhccCCccce
Q 044755 753 NNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFL-LSAAKCLPRLER 831 (1079)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~l~~L~~ 831 (1079)
++... .+ +. ..+++|+.|.+.++..... .+...+++|++|++++| .+..... ......+++|+.
T Consensus 313 ~n~~~-~l-------~~-~~l~~L~~L~l~~n~~~~~-----~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~ 377 (570)
T 2z63_A 313 NCKFG-QF-------PT-LKLKSLKRLTFTSNKGGNA-----FSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKY 377 (570)
T ss_dssp SCBCS-SC-------CB-CBCSSCCEEEEESCBSCCB-----CCCCBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCE
T ss_pred cCccc-cc-------Cc-ccccccCEEeCcCCccccc-----cccccCCCCCEEeCcCC-ccCccccccccccccCccCE
Confidence 44211 00 00 2344555555544332111 11134555555555553 2222210 012334555555
Q ss_pred EeeccccccccccccccccccccccccccccccEEecCCCCCccccccCccccccccccccccccccccccccccccccc
Q 044755 832 IAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGMHETCSNKISSFEDKLDISSAL 911 (1079)
Q Consensus 832 L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (1079)
|++++|.- ..++ .....+++|+.|+++++. +.... .
T Consensus 378 L~l~~n~l-~~~~----------~~~~~l~~L~~L~l~~n~-l~~~~--------------------------------~ 413 (570)
T 2z63_A 378 LDLSFNGV-ITMS----------SNFLGLEQLEHLDFQHSN-LKQMS--------------------------------E 413 (570)
T ss_dssp EECCSCSE-EEEE----------EEEETCTTCCEEECTTSE-EESCT--------------------------------T
T ss_pred EECCCCcc-cccc----------ccccccCCCCEEEccCCc-ccccc--------------------------------c
Confidence 55555431 1111 112234555555555542 11110 0
Q ss_pred ccccccccccceeeecccceeeecCCCCccccccccccceEEEEccCcccccccccchhhhccccceEEEecccccceee
Q 044755 912 FNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCKGLQEII 991 (1079)
Q Consensus 912 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~ 991 (1079)
...+..+++|+.|++++|.+.... ...+..+++|+.|++++|. +++-..+..+..+++|+.|++++|. ++.+
T Consensus 414 ~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~- 485 (570)
T 2z63_A 414 FSVFLSLRNLIYLDISHTHTRVAF-----NGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQ-LEQL- 485 (570)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECC-----TTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEE-
T ss_pred hhhhhcCCCCCEEeCcCCcccccc-----hhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCc-cccC-
Confidence 012345789999999999877652 2356678999999999984 4321123667888999999999984 5444
Q ss_pred cccccccccCCcccccccCeeecccCCCccccCCCccccCCCCccEEEEecCCC
Q 044755 992 SKEGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGMHTSEWPALKLLKVSDCDQ 1045 (1079)
Q Consensus 992 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~ 1045 (1079)
.+..+.. +++|+.|++++| .++.++.... ..+++|++|++++++-
T Consensus 486 ~~~~~~~-------l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 486 SPTAFNS-------LSSLQVLNMASN-QLKSVPDGIF-DRLTSLQKIWLHTNPW 530 (570)
T ss_dssp CTTTTTT-------CTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSCB
T ss_pred Chhhhhc-------ccCCCEEeCCCC-cCCCCCHHHh-hcccCCcEEEecCCcc
Confidence 2334444 889999999986 4777765422 3689999999998653
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=4.4e-27 Score=282.60 Aligned_cols=473 Identities=16% Similarity=0.122 Sum_probs=218.1
Q ss_pred cceeEEEecCCCCCCCCC--ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCcc-ccccccccE
Q 044755 505 KECYAISLRGCSIHELPE--GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSS-IDLLVNLQT 581 (1079)
Q Consensus 505 ~~~~~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~ 581 (1079)
..++++.+++|.+..++. ...+++|++|++.++... .+ +...|.++++|++|++++|.+..+|.. ++.+++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TI--EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EE--CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-cc--ChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 344555555554444321 224445555555444322 12 223344455555555555555444333 445555555
Q ss_pred EeccccccCC---cccccCCcccceeeccCCc-CcccC-hhhccCCcccEEcccccccccccChhhhhcccccceeeccc
Q 044755 582 LCLVECMLDD---IAIIGKLKNLEILSFWGSV-IVMLP-EELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 656 (1079)
Q Consensus 582 L~L~~~~l~~---~~~i~~L~~L~~L~l~~~~-l~~lp-~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 656 (1079)
|++++|.++. |..++++++|++|++++|. +..+| ..+.++++|++|++++| .+....+..++++++|++|++++
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEEC
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhhhhccccCceEeccc
Confidence 5555554432 2344455555555555443 34443 23444555555555544 33333333344455555555444
Q ss_pred ccccccCCCCCchhhhcchh-hhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeecccccccccc
Q 044755 657 CFVEWDDEGPNSERINARLD-ELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVL 735 (1079)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~ 735 (1079)
+... .... .+..+++|+.|+++.+....++.... .....+++|+.|++.++.......
T Consensus 182 n~~~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 182 SESA------------FLLEIFADILSSVRYLELRDTNLARFQFSPL---------PVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp SBST------------THHHHHHHSTTTBSEEEEESCBCTTCCCCCC---------SSCCCCCCCCEEEEESCEEEHHHH
T ss_pred Cccc------------ccchhhHhhcccccEEEccCCcccccccccc---------chhhhhhcccceeccccccchhHH
Confidence 3321 0011 12234455555555544333210000 000124456666666554322111
Q ss_pred cccc--ccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeecccccccccccc-CcCC--cCCCCCcceEEeec
Q 044755 736 FDLD--REGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQ-DRLS--VQSFNELKTIRVEL 810 (1079)
Q Consensus 736 ~~l~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~--~~~~~~L~~L~l~~ 810 (1079)
..+. ...+++|+.|.+.+|..................+++|+.|.+.++. +..+.. .... ...+++|+.|++++
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccc-cchhhhcccchhhhhhcccceEEEecc
Confidence 1110 1345667777776663211000000000112445666666665542 111100 0000 11245677777766
Q ss_pred CCCCCcccchHHhccCCccceEeeccccccccccccccccccccccccccccccEEecCCCCCccccccCcccccccccc
Q 044755 811 CDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGM 890 (1079)
Q Consensus 811 c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~ 890 (1079)
| .+..+|. .....+++|+.|+++++.-...++.. ......+++|+.|++++|. ++.++...........+
T Consensus 320 n-~l~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-------~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 320 S-KVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKN-------SACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNL 389 (549)
T ss_dssp S-CCCCCCH-HHHHHCTTCCEEECCSSCCCHHHHHH-------HTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTC
T ss_pred C-ccccCCH-HHHhcCccccEEEccCCccccccccc-------hhhhhccccCcEEEccCCc-ccccccchhhhhcCCCC
Confidence 4 3555543 22345677777777666533322110 0012245666666666552 33222100000000000
Q ss_pred ccc--ccccccccccccccccccccccccccccceeeecccceeeecCCCCccccccccccceEEEEccCcccccccccc
Q 044755 891 HET--CSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSAS 968 (1079)
Q Consensus 891 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~ 968 (1079)
... ..+.+. ..+.....+++|+.|++++|.++.+... ..++|+.|++++| +++++
T Consensus 390 ~~L~Ls~N~l~----------~lp~~~~~~~~L~~L~Ls~N~l~~l~~~--------~~~~L~~L~Ls~N-~l~~~---- 446 (549)
T 2z81_A 390 TSLDISRNTFH----------PMPDSCQWPEKMRFLNLSSTGIRVVKTC--------IPQTLEVLDVSNN-NLDSF---- 446 (549)
T ss_dssp CEEECTTCCCC----------CCCSCCCCCTTCCEEECTTSCCSCCCTT--------SCTTCSEEECCSS-CCSCC----
T ss_pred CEEECCCCCCc----------cCChhhcccccccEEECCCCCcccccch--------hcCCceEEECCCC-Chhhh----
Confidence 000 000000 1112334467788888888877654211 1257888888887 56644
Q ss_pred hhhhccccceEEEecccccceeecccccccccCCcccccccCeeecccCCCccccCCCccccCCCCccEEEEecCCCcee
Q 044755 969 MLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGMHTSEWPALKLLKVSDCDQVTV 1048 (1079)
Q Consensus 969 ~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~ 1048 (1079)
...+++|+.|++++| .++.+ +.. . .+++|+.|+++++ .++.++.... ..+++|+.|++++||-.-.
T Consensus 447 -~~~l~~L~~L~Ls~N-~l~~i--p~~-~-------~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 447 -SLFLPRLQELYISRN-KLKTL--PDA-S-------LFPVLLVMKISRN-QLKSVPDGIF-DRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp -CCCCTTCCEEECCSS-CCSSC--CCG-G-------GCTTCCEEECCSS-CCCCCCTTGG-GGCTTCCEEECCSSCBCCC
T ss_pred -cccCChhcEEECCCC-ccCcC--CCc-c-------cCccCCEEecCCC-ccCCcCHHHH-hcCcccCEEEecCCCccCC
Confidence 246788899999888 46655 221 1 2788999999885 5666665422 2678999999988875444
Q ss_pred ec
Q 044755 1049 FD 1050 (1079)
Q Consensus 1049 lp 1050 (1079)
.|
T Consensus 513 ~~ 514 (549)
T 2z81_A 513 CP 514 (549)
T ss_dssp HH
T ss_pred Cc
Confidence 44
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=279.79 Aligned_cols=447 Identities=17% Similarity=0.211 Sum_probs=284.8
Q ss_pred eEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccC-ccccccccccEEeccc
Q 044755 508 YAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLP-SSIDLLVNLQTLCLVE 586 (1079)
Q Consensus 508 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~ 586 (1079)
+.+.-.+.++..+|... .++++.|++.++... .+ +...|.++++|++|++++|.+..+| ..++++++|++|+|++
T Consensus 10 ~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~-~~--~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLR-HL--GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TEEECCSSCCSSCCSSS-CSSCCEEECCSCCCC-EE--CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEeCCCCccccCCCc-cccccEEEccCCccC-cc--ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 34455555666777644 357999999987643 34 5556799999999999999999875 5689999999999999
Q ss_pred cccCC--cccccCCcccceeeccCCcCcccCh-hhccCCcccEEcccccccccc--cChhhhhcccccceeecccccccc
Q 044755 587 CMLDD--IAIIGKLKNLEILSFWGSVIVMLPE-ELGHLTKLRQLDLSNCFKLKV--IAPNVISRLVRLEELYMSNCFVEW 661 (1079)
Q Consensus 587 ~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~~~~~l~~L~~L~~L~l~~~~~~~ 661 (1079)
|.++. +..++++.+|++|++++|.+..+|. .++++++|++|++++| .+.. +|. .++++++|++|++++|.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~-~~~~l~~L~~L~l~~n~l~- 162 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPE-YFSNLTNLEHLDLSSNKIQ- 162 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCG-GGGGCTTCCEEECTTSCCC-
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChh-hhcccCCCCEEeCcCCccc-
Confidence 99887 4789999999999999999999876 5899999999999998 5665 444 4899999999999998764
Q ss_pred cCCCCCchhhhcchhhhccCCCC----cEEEEEeeCCCCCCchhh-hcccceeeeee-----------ecCCcccceEee
Q 044755 662 DDEGPNSERINARLDELMHLPRL----TTLEVHVKNDNVLPEGFF-ARKLERFKISK-----------LQGIKDVEYLCL 725 (1079)
Q Consensus 662 ~~~~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~-----------~~~l~~L~~L~L 725 (1079)
......++.+.+| ..|+++.+....++...+ ..+|+.+.+.. +.++++++.+.+
T Consensus 163 ----------~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l 232 (570)
T 2z63_A 163 ----------SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232 (570)
T ss_dssp ----------EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEE
T ss_pred ----------eecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeee
Confidence 1122344444455 788888887776655433 23566665543 111222222221
Q ss_pred c--------------------------------cccccccccccccccccCCCceeeccCCCCcceecccCCcCCCCCCC
Q 044755 726 D--------------------------------KSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAF 773 (1079)
Q Consensus 726 ~--------------------------------~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 773 (1079)
. .+......... ....+++|+.|++.++... . .......+
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~-~------l~~~~~~~ 304 (570)
T 2z63_A 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID-LFNCLTNVSSFSLVSVTIE-R------VKDFSYNF 304 (570)
T ss_dssp EEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTT-TTGGGTTCSEEEEESCEEC-S------CCBCCSCC
T ss_pred ccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchh-hhcCcCcccEEEecCccch-h------hhhhhccC
Confidence 1 11000000000 0123455555555554211 0 00111223
Q ss_pred CccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeeccccccccccccccccccc
Q 044755 774 PILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAI 853 (1079)
Q Consensus 774 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~ 853 (1079)
+|+.|++.++. +..+ +...+++|+.|.+.+|......+. ..+++|+.|+++++.-. ... ..
T Consensus 305 -~L~~L~l~~n~-~~~l-----~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~-~~~-------~~ 365 (570)
T 2z63_A 305 -GWQHLELVNCK-FGQF-----PTLKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGLS-FKG-------CC 365 (570)
T ss_dssp -CCSEEEEESCB-CSSC-----CBCBCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSCCB-EEE-------EE
T ss_pred -CccEEeeccCc-cccc-----CcccccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCccC-ccc-------cc
Confidence 55556555542 2222 123455666666665443222211 34556666666554311 110 00
Q ss_pred cccccccccccEEecCCCCCccccccCcccccccccccccccccccccccccccccccccccccccccceeeecccceee
Q 044755 854 DHQKIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEK 933 (1079)
Q Consensus 854 ~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 933 (1079)
+.....+++|+.|++++|. +..++ ..+..+++|+.|++++|.+..
T Consensus 366 ~~~~~~~~~L~~L~l~~n~-l~~~~----------------------------------~~~~~l~~L~~L~l~~n~l~~ 410 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFNG-VITMS----------------------------------SNFLGLEQLEHLDFQHSNLKQ 410 (570)
T ss_dssp EHHHHTCSCCCEEECCSCS-EEEEE----------------------------------EEEETCTTCCEEECTTSEEES
T ss_pred cccccccCccCEEECCCCc-ccccc----------------------------------ccccccCCCCEEEccCCcccc
Confidence 1112345666666665543 22111 124458999999999998886
Q ss_pred ecCCCCccccccccccceEEEEccCcccccccccchhhhccccceEEEeccccc-ceeecccccccccCCcccccccCee
Q 044755 934 IWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCKGL-QEIISKEGADDQVLPNFVFPQVTSL 1012 (1079)
Q Consensus 934 ~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l-~~i~~~~~~~~~~~~~~~l~~L~~L 1012 (1079)
.. +...+..+++|+.|++++| .+... .+..+..+++|+.|++++|... ..+ +..+.. +++|+.|
T Consensus 411 ~~----~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~--p~~~~~-------l~~L~~L 475 (570)
T 2z63_A 411 MS----EFSVFLSLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGNSFQENFL--PDIFTE-------LRNLTFL 475 (570)
T ss_dssp CT----TSCTTTTCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCEEGGGEE--CSCCTT-------CTTCCEE
T ss_pred cc----chhhhhcCCCCCEEeCcCC-ccccc-chhhhhcCCcCcEEECcCCcCccccc--hhhhhc-------ccCCCEE
Confidence 52 2235678899999999999 45544 3467788999999999999632 123 444544 8999999
Q ss_pred ecccCCCcccc-CCCccccCCCCccEEEEecCCCceeeccc
Q 044755 1013 RLSGLPELKCL-YPGMHTSEWPALKLLKVSDCDQVTVFDSE 1052 (1079)
Q Consensus 1013 ~l~~c~~L~~l-~~~~~~~~l~sL~~L~i~~C~~L~~lp~~ 1052 (1079)
++++|. ++.+ |..+. .+++|++|++++| +++.+|.+
T Consensus 476 ~l~~n~-l~~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~~ 512 (570)
T 2z63_A 476 DLSQCQ-LEQLSPTAFN--SLSSLQVLNMASN-QLKSVPDG 512 (570)
T ss_dssp ECTTSC-CCEECTTTTT--TCTTCCEEECCSS-CCSCCCTT
T ss_pred ECCCCc-cccCChhhhh--cccCCCEEeCCCC-cCCCCCHH
Confidence 999976 5555 55554 6899999999997 57766654
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=7.6e-26 Score=278.12 Aligned_cols=104 Identities=14% Similarity=0.203 Sum_probs=52.9
Q ss_pred ccccceeeecccceeeecCCCCcccccc--ccccceEEEEccCcccccccccchhhhccccceEEEeccc------ccce
Q 044755 918 LSNLEVLEMNKVNIEKIWHNQLPVAMFL--CFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCK------GLQE 989 (1079)
Q Consensus 918 l~~L~~L~l~~~~l~~~~~~~~~~~~l~--~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~------~l~~ 989 (1079)
+++|+.|++++|+++.+ |. .+. .+++|+.|+|++| +++.+ +..+..+++|+.|++++|+ ....
T Consensus 727 l~~L~~L~Ls~N~L~~l-----p~-~l~~~~l~~L~~L~Ls~N-~L~~l--p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLTSL-----SD-DFRATTLPYLSNMDVSYN-CFSSF--PTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp GGGCCEEECCSSCCCCC-----CG-GGSTTTCTTCCEEECCSS-CCSSC--CCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred cCCccEEECCCCCCccc-----hH-HhhhccCCCcCEEEeCCC-CCCcc--chhhhcCCCCCEEECCCCCCccccccccc
Confidence 34566666666655533 11 222 4566666666665 44443 2334456666666665532 1111
Q ss_pred eecccccccccCCcccccccCeeecccCCCccccCCCccccCCCCccEEEEecCC
Q 044755 990 IISKEGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGMHTSEWPALKLLKVSDCD 1044 (1079)
Q Consensus 990 i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~ 1044 (1079)
+ |..+.+ +++|+.|++++|. ++.+|..+. ++|+.|++++|+
T Consensus 798 i--p~~l~~-------L~~L~~L~Ls~N~-L~~Ip~~l~----~~L~~LdLs~N~ 838 (876)
T 4ecn_A 798 W--PTGITT-------CPSLIQLQIGSND-IRKVDEKLT----PQLYILDIADNP 838 (876)
T ss_dssp C--CTTGGG-------CSSCCEEECCSSC-CCBCCSCCC----SSSCEEECCSCT
T ss_pred C--hHHHhc-------CCCCCEEECCCCC-CCccCHhhc----CCCCEEECCCCC
Confidence 1 222222 5666666666654 366665532 566666666665
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=2.7e-25 Score=279.30 Aligned_cols=479 Identities=17% Similarity=0.158 Sum_probs=295.3
Q ss_pred eEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcc-cccc-CccccccccccEEecc
Q 044755 508 YAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQ-LLLL-PSSIDLLVNLQTLCLV 585 (1079)
Q Consensus 508 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~l-p~~i~~L~~L~~L~L~ 585 (1079)
+.+..++++...+|. -.++++.|+++++... .+ +...|.++++|++|+|++|. +..+ |..++++++|++|+|+
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~-~i--~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIR-TV--TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCC-EE--CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCC-cc--ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 456667788888887 5689999999997654 33 44567999999999999995 4466 7789999999999999
Q ss_pred ccccCC--cccccCCcccceeeccCCcCcc-cChh--hccCCcccEEcccccccccccC-hhhhhcccccceeecccccc
Q 044755 586 ECMLDD--IAIIGKLKNLEILSFWGSVIVM-LPEE--LGHLTKLRQLDLSNCFKLKVIA-PNVISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 586 ~~~l~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~~~-~~~l~~L~~L~~L~l~~~~~ 659 (1079)
+|.+.. |..++++++|++|++++|.+.. +|.. ++++++|++|++++| .+..++ +..++++++|++|++++|.+
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcC
Confidence 999887 7899999999999999998875 4555 899999999999998 565553 35689999999999999876
Q ss_pred cccCCCCCchhhhcchhhhccC--CCCcEEEEEeeCCCCCCc-hh-------hhcccceeeeeee--c-----------C
Q 044755 660 EWDDEGPNSERINARLDELMHL--PRLTTLEVHVKNDNVLPE-GF-------FARKLERFKISKL--Q-----------G 716 (1079)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~-~~-------~~~~L~~L~l~~~--~-----------~ 716 (1079)
. ......+..+ ++|+.|+++.+....... .. ....|+.|.++.- . .
T Consensus 161 ~-----------~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 229 (844)
T 3j0a_A 161 F-----------LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229 (844)
T ss_dssp C-----------CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred C-----------eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence 4 1122334433 789999998876543221 11 0112444444321 0 0
Q ss_pred CcccceEeeccccc--------cccc-cccccccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccc
Q 044755 717 IKDVEYLCLDKSQD--------VKNV-LFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKL 787 (1079)
Q Consensus 717 l~~L~~L~L~~~~~--------~~~~-~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 787 (1079)
...+..+.+..+.. .... ...+..-..++|+.|+++++.-.. +. . .....+++|+.|++.++ .+
T Consensus 230 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-~~--~---~~~~~l~~L~~L~L~~n-~i 302 (844)
T 3j0a_A 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LN--S---RVFETLKDLKVLNLAYN-KI 302 (844)
T ss_dssp SCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-EC--S---CCSSSCCCCCEEEEESC-CC
T ss_pred cccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc-cC--h---hhhhcCCCCCEEECCCC-cC
Confidence 12333444331110 0000 000100113678888888764221 11 1 11256788888888875 34
Q ss_pred cccccCcCCcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeeccccccccccccccccccccccccccccccEEe
Q 044755 788 ERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLC 867 (1079)
Q Consensus 788 ~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~ 867 (1079)
..+... ....+++|++|++++| .+..+.+ ..+..+++|+.|+++++. +..++. .....+++|+.|+
T Consensus 303 ~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-i~~~~~---------~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 303 NKIADE--AFYGLDNLQVLNLSYN-LLGELYS-SNFYGLPKVAYIDLQKNH-IAIIQD---------QTFKFLEKLQTLD 368 (844)
T ss_dssp CEECTT--TTTTCSSCCEEEEESC-CCSCCCS-CSCSSCTTCCEEECCSCC-CCCCCS---------SCSCSCCCCCEEE
T ss_pred CCCChH--HhcCCCCCCEEECCCC-CCCccCH-HHhcCCCCCCEEECCCCC-CCccCh---------hhhcCCCCCCEEE
Confidence 443221 2456888999999885 4555543 245667888888888773 433321 1244578999999
Q ss_pred cCCCCCccccccCcccccccccccccccccccccc------------cccccccccccccccccccceeeecccceeeec
Q 044755 868 LGSLPELTSFCCEVKKNREAQGMHETCSNKISSFE------------DKLDISSALFNEKVVLSNLEVLEMNKVNIEKIW 935 (1079)
Q Consensus 868 L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 935 (1079)
++++. ++.++... .++.+. ...+.+..+. .+.-...........+++|+.|++++|+++.+.
T Consensus 369 Ls~N~-l~~i~~~~----~L~~L~-l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~ 442 (844)
T 3j0a_A 369 LRDNA-LTTIHFIP----SIPDIF-LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442 (844)
T ss_dssp EETCC-SCCCSSCC----SCSEEE-EESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCC
T ss_pred CCCCC-CCcccCCC----Ccchhc-cCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccc
Confidence 98764 33332210 000000 0001111110 000000000111235678888888888776542
Q ss_pred CCCCccccccccccceEEEEccCccccccc----ccchhhhccccceEEEecccccceeecccccccccCCcccccccCe
Q 044755 936 HNQLPVAMFLCFQNLTRLILSKCPKLKYIF----SASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTS 1011 (1079)
Q Consensus 936 ~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~----~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~ 1011 (1079)
... .+..+++|+.|++++| .++... .+..+.++++|+.|++++| .++.+. +..+.+ +++|+.
T Consensus 443 ~~~----~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~-------l~~L~~ 508 (844)
T 3j0a_A 443 GDQ----TPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLP-PGVFSH-------LTALRG 508 (844)
T ss_dssp SSS----SSCSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCC-TTSSSS-------CCSCSE
T ss_pred ccc----ccccCCccccccCCCC-ccccccccccchhhhcCcccccEEECCCC-cccccC-hhHccc-------hhhhhe
Confidence 221 2234678888888887 443221 1234667788888888887 455442 222333 788999
Q ss_pred eecccCCCccccCCCccccCCCCccEEEEecCCCceee
Q 044755 1012 LRLSGLPELKCLYPGMHTSEWPALKLLKVSDCDQVTVF 1049 (1079)
Q Consensus 1012 L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~l 1049 (1079)
|+++++ .++.+|.... .++|+.|+++++. ++.+
T Consensus 509 L~Ls~N-~l~~l~~~~~---~~~L~~L~Ls~N~-l~~~ 541 (844)
T 3j0a_A 509 LSLNSN-RLTVLSHNDL---PANLEILDISRNQ-LLAP 541 (844)
T ss_dssp EEEESC-CCSSCCCCCC---CSCCCEEEEEEEC-CCCC
T ss_pred eECCCC-CCCccChhhh---hccccEEECCCCc-CCCC
Confidence 999885 6777876644 2789999998854 4433
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.5e-25 Score=272.02 Aligned_cols=237 Identities=13% Similarity=0.119 Sum_probs=113.0
Q ss_pred cccccCccccccccccEEeccccccCC-------------------ccccc--CCcccceeeccCCcC-cccChhhccCC
Q 044755 565 QLLLLPSSIDLLVNLQTLCLVECMLDD-------------------IAIIG--KLKNLEILSFWGSVI-VMLPEELGHLT 622 (1079)
Q Consensus 565 ~i~~lp~~i~~L~~L~~L~L~~~~l~~-------------------~~~i~--~L~~L~~L~l~~~~l-~~lp~~i~~L~ 622 (1079)
.++.+|..++++++|++|+|++|.++. |..++ ++++|++|++++|.+ ..+|..+++++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 344455556666666666666655443 34455 566666666665542 34555556666
Q ss_pred cccEEcccccccccc--cChhhhhcc------cccceeecccccccccCCCCCchhhhcchh--hhccCCCCcEEEEEee
Q 044755 623 KLRQLDLSNCFKLKV--IAPNVISRL------VRLEELYMSNCFVEWDDEGPNSERINARLD--ELMHLPRLTTLEVHVK 692 (1079)
Q Consensus 623 ~L~~L~l~~~~~l~~--~~~~~l~~L------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~ 692 (1079)
+|++|++++|..++. +|.. ++++ ++|++|++++|.+. ..+. .++.+++|+.|+++.+
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~------------~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLK------------TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCS------------SCCCHHHHTTCTTCCEEECCSC
T ss_pred CCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCC------------ccCchhhhccCCCCCEEeCcCC
Confidence 666666665532432 3333 4444 55666666555442 1222 4555555666665555
Q ss_pred CCC-CCCchhhhcccceeeeeeecCCcccceEeeccccccccccccccccccCC-CceeeccCCCCcceecccCCcCCCC
Q 044755 693 NDN-VLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSR-LKHLHVQNNPDFMCIVDSKERVPLD 770 (1079)
Q Consensus 693 ~~~-~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~ 770 (1079)
... .+| . +..+++|+.|+++++... .+...+ ..+++ |+.|+++++.-. .+. ... ..
T Consensus 341 ~l~g~ip-~-------------~~~l~~L~~L~L~~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~l~-~lp---~~~-~~ 398 (636)
T 4eco_A 341 QLEGKLP-A-------------FGSEIKLASLNLAYNQIT-EIPANF--CGFTEQVENLSFAHNKLK-YIP---NIF-DA 398 (636)
T ss_dssp CCEEECC-C-------------CEEEEEESEEECCSSEEE-ECCTTS--EEECTTCCEEECCSSCCS-SCC---SCC-CT
T ss_pred cCccchh-h-------------hCCCCCCCEEECCCCccc-cccHhh--hhhcccCcEEEccCCcCc-ccc---hhh-hh
Confidence 444 343 1 112345555555554432 221111 34455 666666665321 111 010 00
Q ss_pred CCCCccceeeccccccccccccCc----CCcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeecccc
Q 044755 771 DAFPILESLNLYNLIKLERICQDR----LSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR 838 (1079)
Q Consensus 771 ~~~~~L~~L~l~~~~~l~~i~~~~----~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 838 (1079)
..+++|+.|+++++.-...++... ...-.+++|+.|++++| .+..++. .....+++|+.|+++++.
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~-~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPK-ELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCT-HHHHTTCCCSEEECCSSC
T ss_pred cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCH-HHHccCCCCCEEECCCCC
Confidence 223466666666643211111000 00003456666666663 4445543 233445666666666553
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=8.5e-25 Score=262.68 Aligned_cols=431 Identities=16% Similarity=0.146 Sum_probs=282.4
Q ss_pred cccceeEEEecCCCCCCCCC--ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccc--cCcccccccc
Q 044755 503 ALKECYAISLRGCSIHELPE--GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLL--LPSSIDLLVN 578 (1079)
Q Consensus 503 ~~~~~~~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~--lp~~i~~L~~ 578 (1079)
....++++.+.+|.+..++. ...+++|++|++.++... .+ +...|.++++|++|++++|.+.. .|..++.+++
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SL--SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SC--CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-cc--CHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 35789999999999988764 347999999999998653 34 56667999999999999999985 4778999999
Q ss_pred ccEEeccccc-cCC-c-ccccCCcccceeeccCCcCcc-cChhhccCCcccEEcccccccccccChhhhhcccccceeec
Q 044755 579 LQTLCLVECM-LDD-I-AIIGKLKNLEILSFWGSVIVM-LPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYM 654 (1079)
Q Consensus 579 L~~L~L~~~~-l~~-~-~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l 654 (1079)
|++|++++|. +.. + ..++++++|++|++++|.+.. .|..++.+++|++|++++| ....+|...++.+++|++|++
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-BSTTHHHHHHHSTTTBSEEEE
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC-cccccchhhHhhcccccEEEc
Confidence 9999999998 555 3 689999999999999998876 5888999999999999997 567777766678999999999
Q ss_pred ccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCc-----hh-hhcccceeeeee---------------
Q 044755 655 SNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPE-----GF-FARKLERFKISK--------------- 713 (1079)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----~~-~~~~L~~L~l~~--------------- 713 (1079)
++|.+..... ........+++|+.|+++++....... .. ...+++.+.+..
T Consensus 204 ~~n~l~~~~~--------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 275 (549)
T 2z81_A 204 RDTNLARFQF--------SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275 (549)
T ss_dssp ESCBCTTCCC--------CCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTT
T ss_pred cCCccccccc--------cccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchh
Confidence 9987651100 011122346788888888765332110 00 112334333322
Q ss_pred -ecCCcccceEeecccccccccc-cccc--ccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccc
Q 044755 714 -LQGIKDVEYLCLDKSQDVKNVL-FDLD--REGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLER 789 (1079)
Q Consensus 714 -~~~l~~L~~L~L~~~~~~~~~~-~~l~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 789 (1079)
+..+++++.|.+.++....... ..+. ...+++|+.|.+.++. +..+... . ...+++|+.|+++++.-...
T Consensus 276 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~--~---~~~l~~L~~L~Ls~N~l~~~ 349 (549)
T 2z81_A 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCS--F---SQHLKSLEFLDLSENLMVEE 349 (549)
T ss_dssp CCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHH--H---HHHCTTCCEEECCSSCCCHH
T ss_pred hhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHH--H---HhcCccccEEEccCCccccc
Confidence 1224455555555443211100 0000 0123567777776653 1111000 0 02467777888777643222
Q ss_pred cccCcCCcCCCCCcceEEeecCCCCCcccch-HHhccCCccceEeeccccccccccccccccccccccccccccccEEec
Q 044755 790 ICQDRLSVQSFNELKTIRVELCDQLSNIFLL-SAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCL 868 (1079)
Q Consensus 790 i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L 868 (1079)
+.......+.+++|+.|++++| .++.+++. ..+..+++|+.|++++|. ++.++ .....+++|++|++
T Consensus 350 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp----------~~~~~~~~L~~L~L 417 (549)
T 2z81_A 350 YLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNT-FHPMP----------DSCQWPEKMRFLNL 417 (549)
T ss_dssp HHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCC----------SCCCCCTTCCEEEC
T ss_pred cccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCC-CccCC----------hhhcccccccEEEC
Confidence 2111112356777888888774 45555421 235567778888887763 33333 22334677778877
Q ss_pred CCCCCccccccCcccccccccccccccccccccccccccccccccccccccccceeeecccceeeecCCCCccccccccc
Q 044755 869 GSLPELTSFCCEVKKNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQ 948 (1079)
Q Consensus 869 ~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~ 948 (1079)
+++. ++.++.. ..++|+.|++++|+++.+. ..++
T Consensus 418 s~N~-l~~l~~~------------------------------------~~~~L~~L~Ls~N~l~~~~---------~~l~ 451 (549)
T 2z81_A 418 SSTG-IRVVKTC------------------------------------IPQTLEVLDVSNNNLDSFS---------LFLP 451 (549)
T ss_dssp TTSC-CSCCCTT------------------------------------SCTTCSEEECCSSCCSCCC---------CCCT
T ss_pred CCCC-cccccch------------------------------------hcCCceEEECCCCChhhhc---------ccCC
Confidence 7764 4333221 1368999999999887641 3579
Q ss_pred cceEEEEccCcccccccccchhhhccccceEEEecccccceeecccccccccCCcccccccCeeecccCCCccc
Q 044755 949 NLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKC 1022 (1079)
Q Consensus 949 ~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~ 1022 (1079)
+|++|++++| +++.++ . ...+++|+.|++++| .++.+. +..+.. +++|+.|++++++-...
T Consensus 452 ~L~~L~Ls~N-~l~~ip--~-~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~-------l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 452 RLQELYISRN-KLKTLP--D-ASLFPVLLVMKISRN-QLKSVP-DGIFDR-------LTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp TCCEEECCSS-CCSSCC--C-GGGCTTCCEEECCSS-CCCCCC-TTGGGG-------CTTCCEEECCSSCBCCC
T ss_pred hhcEEECCCC-ccCcCC--C-cccCccCCEEecCCC-ccCCcC-HHHHhc-------CcccCEEEecCCCccCC
Confidence 9999999999 777763 2 356899999999998 455542 233433 89999999998874433
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=3.9e-25 Score=263.47 Aligned_cols=445 Identities=13% Similarity=0.118 Sum_probs=274.9
Q ss_pred eEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccccc-CccccccccccEEeccc
Q 044755 508 YAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVE 586 (1079)
Q Consensus 508 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~ 586 (1079)
+++.++++.+..+|..+. ++|+.|++.++... .+ +...|.++++|++|++++|.++.+ |..++.+++|++|+|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~-~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYIS-EL--WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCC-CC--CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCccc-cc--ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 578888898888887665 89999999987643 33 555678999999999999999987 77899999999999999
Q ss_pred cccCC-cccccCCcccceeeccCCcCcc--cChhhccCCcccEEcccccccccccChhhhhccccc--ceeecccccccc
Q 044755 587 CMLDD-IAIIGKLKNLEILSFWGSVIVM--LPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRL--EELYMSNCFVEW 661 (1079)
Q Consensus 587 ~~l~~-~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L--~~L~l~~~~~~~ 661 (1079)
|.++. |.. .+.+|++|++++|.+.. +|..++++++|++|++++| .+.. ..++.+++| ++|++++|.+..
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred CceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccch---hhccccccceeeEEEeecccccc
Confidence 99988 444 89999999999998876 5788999999999999997 5554 336778888 999999886610
Q ss_pred cCCCCCchhhhcchhhhccCCCCcEEEEE--eeCCC-CCCchh--hhcccceeeeee----------------ecCCccc
Q 044755 662 DDEGPNSERINARLDELMHLPRLTTLEVH--VKNDN-VLPEGF--FARKLERFKISK----------------LQGIKDV 720 (1079)
Q Consensus 662 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~--~~~~~-~~~~~~--~~~~L~~L~l~~----------------~~~l~~L 720 (1079)
....+..+..+.. +.+.+. .+... .++... .+.+|+.+.+.. +..+++|
T Consensus 153 ---------~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L 222 (520)
T 2z7x_B 153 ---------EKEDPEGLQDFNT-ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL 222 (520)
T ss_dssp ---------SSCCTTTTTTCCE-EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTC
T ss_pred ---------ccccccccccccc-ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccch
Confidence 0122233333322 233332 22111 111111 012333333322 2335566
Q ss_pred ceEeecccccccccccccc-ccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCC
Q 044755 721 EYLCLDKSQDVKNVLFDLD-REGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQS 799 (1079)
Q Consensus 721 ~~L~L~~~~~~~~~~~~l~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~ 799 (1079)
+.|++.++......+..+. ....++|+.|+++++.-...+... ........+++|+.+++.++.. .++.. ....
T Consensus 223 ~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~~~l~~L~~l~l~~n~~--~~p~~--~~~~ 297 (520)
T 2z7x_B 223 SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR-DFDYSGTSLKALSIHQVVSDVF--GFPQS--YIYE 297 (520)
T ss_dssp CEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCC-CCCCCSCCCCEEEEEEEEECCC--CSCTH--HHHH
T ss_pred hhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccc-hhhcccccCceeEeccccccce--ecchh--hhhc
Confidence 6666665443222111111 012356777777665311111000 0000013456666666655421 11100 0001
Q ss_pred C---CCcceEEeecCCCCCcccchHHhccCCccceEeeccccccccccccccccccccccccccccccEEecCCCCCccc
Q 044755 800 F---NELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTS 876 (1079)
Q Consensus 800 ~---~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~ 876 (1079)
+ ++|+.|++++|. +...+. ...+++|++|+++++.-...++ .....+++|+.|+++++. ++.
T Consensus 298 ~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~----------~~~~~l~~L~~L~L~~N~-l~~ 362 (520)
T 2z7x_B 298 IFSNMNIKNFTVSGTR-MVHMLC---PSKISPFLHLDFSNNLLTDTVF----------ENCGHLTELETLILQMNQ-LKE 362 (520)
T ss_dssp HHHTCCCSEEEEESSC-CCCCCC---CSSCCCCCEEECCSSCCCTTTT----------TTCCCCSSCCEEECCSSC-CCB
T ss_pred ccccCceeEEEcCCCc-cccccc---hhhCCcccEEEeECCccChhhh----------hhhccCCCCCEEEccCCc-cCc
Confidence 1 457777777754 333221 1356777777777765332222 223457778888877664 222
Q ss_pred cccCcccccccccccccccccccccccccccccccccccccccccceeeecccceee-ecCCCCccccccccccceEEEE
Q 044755 877 FCCEVKKNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEK-IWHNQLPVAMFLCFQNLTRLIL 955 (1079)
Q Consensus 877 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~~l~~l~~L~~L~i 955 (1079)
++. .+..+..+++|+.|++++|.+.. + +...+..+++|+.|++
T Consensus 363 l~~-------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~l-----~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 363 LSK-------------------------------IAEMTTQMKSLQQLDISQNSVSYDE-----KKGDCSWTKSLLSLNM 406 (520)
T ss_dssp HHH-------------------------------HHHHHTTCTTCCEEECCSSCCBCCG-----GGCSCCCCTTCCEEEC
T ss_pred ccc-------------------------------chHHHhhCCCCCEEECCCCcCCccc-----ccchhccCccCCEEEC
Confidence 110 11123457899999999998876 4 3334567899999999
Q ss_pred ccCcccccccccchhhhc-cccceEEEecccccceeecccccccccCCcccccccCeeecccCCCccccCCCccccCCCC
Q 044755 956 SKCPKLKYIFSASMLGSF-EHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGMHTSEWPA 1034 (1079)
Q Consensus 956 ~~c~~l~~l~~~~~~~~l-~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~s 1034 (1079)
++|. ++... ...+ ++|+.|++++| .++.+ +..+.. +++|++|++++| .++.+|... ...+++
T Consensus 407 s~N~-l~~~~----~~~l~~~L~~L~Ls~N-~l~~i--p~~~~~-------l~~L~~L~L~~N-~l~~l~~~~-~~~l~~ 469 (520)
T 2z7x_B 407 SSNI-LTDTI----FRCLPPRIKVLDLHSN-KIKSI--PKQVVK-------LEALQELNVASN-QLKSVPDGI-FDRLTS 469 (520)
T ss_dssp CSSC-CCGGG----GGSCCTTCCEEECCSS-CCCCC--CGGGGG-------CTTCCEEECCSS-CCCCCCTTT-TTTCTT
T ss_pred cCCC-CCcch----hhhhcccCCEEECCCC-ccccc--chhhhc-------CCCCCEEECCCC-cCCccCHHH-hccCCc
Confidence 9984 44321 2223 68999999998 56655 444433 899999999996 577888762 236899
Q ss_pred ccEEEEecCCC
Q 044755 1035 LKLLKVSDCDQ 1045 (1079)
Q Consensus 1035 L~~L~i~~C~~ 1045 (1079)
|++|+++++|-
T Consensus 470 L~~L~l~~N~~ 480 (520)
T 2z7x_B 470 LQKIWLHTNPW 480 (520)
T ss_dssp CCEEECCSSCB
T ss_pred ccEEECcCCCC
Confidence 99999998774
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=5.2e-25 Score=270.74 Aligned_cols=423 Identities=16% Similarity=0.142 Sum_probs=270.1
Q ss_pred CcccEEEecCCCCcccccCCcchhccCCcceEEEe-cCccc---------------------------------------
Q 044755 527 LRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDF-TRMQL--------------------------------------- 566 (1079)
Q Consensus 527 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L-~~~~i--------------------------------------- 566 (1079)
.++..|++.++.....+ |.. +.++++|++|+| ++|.+
T Consensus 323 ~~V~~L~Ls~~~L~G~i--p~~-l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~ 399 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRV--PDA-IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399 (876)
T ss_dssp SCEEEEECTTTCCEEEE--CGG-GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred CCEEEEECccCCCCCcC--chH-HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchh
Confidence 57899999998877676 644 589999999999 66532
Q ss_pred --------------------------------------cccCccccccccccEEeccccccCC-----------------
Q 044755 567 --------------------------------------LLLPSSIDLLVNLQTLCLVECMLDD----------------- 591 (1079)
Q Consensus 567 --------------------------------------~~lp~~i~~L~~L~~L~L~~~~l~~----------------- 591 (1079)
+.+|..++++++|++|+|++|.++.
T Consensus 400 ~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp SCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred hhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 1266677777777777777777654
Q ss_pred --ccccc--CCcccceeeccCCc-CcccChhhccCCcccEEcccccccccc--cChhhhhccc-------ccceeecccc
Q 044755 592 --IAIIG--KLKNLEILSFWGSV-IVMLPEELGHLTKLRQLDLSNCFKLKV--IAPNVISRLV-------RLEELYMSNC 657 (1079)
Q Consensus 592 --~~~i~--~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~--~~~~~l~~L~-------~L~~L~l~~~ 657 (1079)
|..++ ++++|++|++++|. ...+|..++++++|++|++++|..++. +|.. +++++ +|++|++++|
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSS
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCC
Confidence 45555 77777777777774 455677777777777777777632543 4443 55555 7777777776
Q ss_pred cccccCCCCCchhhhcchh--hhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeecccccccccc
Q 044755 658 FVEWDDEGPNSERINARLD--ELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVL 735 (1079)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~ 735 (1079)
.+. ..+. .++++++|+.|+++.+.+..+| . +..+++|+.|+++++... .+.
T Consensus 559 ~L~------------~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~-------------~~~L~~L~~L~Ls~N~l~-~lp 611 (876)
T 4ecn_A 559 NLE------------EFPASASLQKMVKLGLLDCVHNKVRHLE-A-------------FGTNVKLTDLKLDYNQIE-EIP 611 (876)
T ss_dssp CCC------------BCCCHHHHTTCTTCCEEECTTSCCCBCC-C-------------CCTTSEESEEECCSSCCS-CCC
T ss_pred cCC------------ccCChhhhhcCCCCCEEECCCCCcccch-h-------------hcCCCcceEEECcCCccc-cch
Confidence 553 2233 5667777777777766665555 1 334678888888887644 332
Q ss_pred ccccccccCC-CceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcC--CCCCcceEEeecCC
Q 044755 736 FDLDREGFSR-LKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQ--SFNELKTIRVELCD 812 (1079)
Q Consensus 736 ~~l~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~--~~~~L~~L~l~~c~ 812 (1079)
..+ ..+++ |+.|+++++.-. .+. ..+. ....++|+.|+++++.-...++......+ .+++|+.|++++|
T Consensus 612 ~~l--~~l~~~L~~L~Ls~N~L~-~lp---~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N- 683 (876)
T 4ecn_A 612 EDF--CAFTDQVEGLGFSHNKLK-YIP---NIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN- 683 (876)
T ss_dssp TTS--CEECTTCCEEECCSSCCC-SCC---SCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-
T ss_pred HHH--hhccccCCEEECcCCCCC-cCc---hhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-
Confidence 222 55677 999999988522 221 1111 12334599999988643222211111112 3458999999985
Q ss_pred CCCcccchHHhccCCccceEeeccccccccccccccccccccccccccccccEEecCCCCCccccccCcccccccccccc
Q 044755 813 QLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGMHE 892 (1079)
Q Consensus 813 ~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~ 892 (1079)
.+..+|. .....+++|+.|+++++. +..++..... ........+++|+.|+|++| +++.++.
T Consensus 684 ~L~~lp~-~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~--~~~~~l~nl~~L~~L~Ls~N-~L~~lp~------------- 745 (876)
T 4ecn_A 684 EIQKFPT-ELFATGSPISTIILSNNL-MTSIPENSLK--PKDGNYKNTYLLTTIDLRFN-KLTSLSD------------- 745 (876)
T ss_dssp CCCSCCH-HHHHTTCCCSEEECCSCC-CSCCCTTSSS--CTTSCCTTGGGCCEEECCSS-CCCCCCG-------------
T ss_pred cCCccCH-HHHccCCCCCEEECCCCc-CCccChHHhc--cccccccccCCccEEECCCC-CCccchH-------------
Confidence 5666654 345578999999998874 4444421111 00001123458999999887 4554432
Q ss_pred cccccccccccccccccccccccc--cccccceeeecccceeeecCCCCccccccccccceEEEEccCc-----cccccc
Q 044755 893 TCSNKISSFEDKLDISSALFNEKV--VLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCP-----KLKYIF 965 (1079)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~-----~l~~l~ 965 (1079)
.+. .+++|+.|++++|.++.+ | ..+..+++|+.|+|++|+ ++...
T Consensus 746 ---------------------~l~~~~l~~L~~L~Ls~N~L~~l-----p-~~l~~L~~L~~L~Ls~N~~ls~N~l~~~- 797 (876)
T 4ecn_A 746 ---------------------DFRATTLPYLSNMDVSYNCFSSF-----P-TQPLNSSQLKAFGIRHQRDAEGNRILRQ- 797 (876)
T ss_dssp ---------------------GGSTTTCTTCCEEECCSSCCSSC-----C-CGGGGCTTCCEEECCCCBCTTCCBCCCC-
T ss_pred ---------------------HhhhccCCCcCEEEeCCCCCCcc-----c-hhhhcCCCCCEEECCCCCCccccccccc-
Confidence 222 589999999999988875 2 245689999999998743 33333
Q ss_pred ccchhhhccccceEEEecccccceeecccccccccCCcccccccCeeecccCCCccccC-CCccc------cCCCCccEE
Q 044755 966 SASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCLY-PGMHT------SEWPALKLL 1038 (1079)
Q Consensus 966 ~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~-~~~~~------~~l~sL~~L 1038 (1079)
.+..+..+++|+.|++++|. +..+ |..+ +++|+.|+|++|+- ..+. ....+ ..+..-...
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~-L~~I--p~~l---------~~~L~~LdLs~N~l-~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSND-IRKV--DEKL---------TPQLYILDIADNPN-ISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSC-CCBC--CSCC---------CSSSCEEECCSCTT-CEEECGGGHHHHHTTCCEEECCTTS
T ss_pred ChHHHhcCCCCCEEECCCCC-CCcc--CHhh---------cCCCCEEECCCCCC-CccChHHccccccchheeecCCCcc
Confidence 24667889999999999995 4665 3332 57999999999873 3332 21111 011222334
Q ss_pred EEecCCCce
Q 044755 1039 KVSDCDQVT 1047 (1079)
Q Consensus 1039 ~i~~C~~L~ 1047 (1079)
+|.+|+.|.
T Consensus 865 ~I~gC~~L~ 873 (876)
T 4ecn_A 865 DIRGCDALG 873 (876)
T ss_dssp EEESCGGGC
T ss_pred ccCCCCCcc
Confidence 678888774
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=2.7e-25 Score=269.70 Aligned_cols=418 Identities=15% Similarity=0.133 Sum_probs=287.7
Q ss_pred CcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccc-------------cCc---------------------c
Q 044755 527 LRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLL-------------LPS---------------------S 572 (1079)
Q Consensus 527 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-------------lp~---------------------~ 572 (1079)
.+++.|++.++.....+ |. .+.++++|++|+|++|.+.. +|. .
T Consensus 81 ~~V~~L~L~~~~l~g~l--p~-~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRV--PD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEE--CG-GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcC--Ch-HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhh
Confidence 47889999998876666 64 46899999999999997521 111 1
Q ss_pred cc-ccc------------------cccEEecc--ccccCC-cccccCCcccceeeccCCcCcc-----------------
Q 044755 573 ID-LLV------------------NLQTLCLV--ECMLDD-IAIIGKLKNLEILSFWGSVIVM----------------- 613 (1079)
Q Consensus 573 i~-~L~------------------~L~~L~L~--~~~l~~-~~~i~~L~~L~~L~l~~~~l~~----------------- 613 (1079)
+. .+. .++.+.+. +|.++. |..++++++|++|++++|.+..
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence 11 011 11112121 345666 7889999999999999999988
Q ss_pred -cChhhc--cCCcccEEcccccccccccChhhhhcccccceeeccccc-ccccCCCCCchhhh-cchhhhccC------C
Q 044755 614 -LPEELG--HLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCF-VEWDDEGPNSERIN-ARLDELMHL------P 682 (1079)
Q Consensus 614 -lp~~i~--~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~-~~~~~l~~l------~ 682 (1079)
+|..++ ++++|++|++++|.....+|. .++++++|++|++++|. +. + ..+..++.+ +
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l~-----------~~~lp~~~~~L~~~~~l~ 305 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGIS-----------GEQLKDDWQALADAPVGE 305 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTSC-----------HHHHHHHHHHHHHSGGGG
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCCc-----------cccchHHHHhhhccccCC
Confidence 999999 999999999999865666665 48999999999999986 53 2 344455544 8
Q ss_pred CCcEEEEEeeCCCCCCc--hhhhcccceeeeeeecCCcccceEeeccccccccccccccccccCCCceeeccCCCCccee
Q 044755 683 RLTTLEVHVKNDNVLPE--GFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCI 760 (1079)
Q Consensus 683 ~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~ 760 (1079)
+|+.|+++.+....+|. .+ ..+++|+.|+++++.....+. .+ ..+++|+.|+++++.-. .+
T Consensus 306 ~L~~L~L~~n~l~~ip~~~~l-------------~~l~~L~~L~L~~N~l~g~ip-~~--~~l~~L~~L~L~~N~l~-~l 368 (636)
T 4eco_A 306 KIQIIYIGYNNLKTFPVETSL-------------QKMKKLGMLECLYNQLEGKLP-AF--GSEIKLASLNLAYNQIT-EI 368 (636)
T ss_dssp TCCEEECCSSCCSSCCCHHHH-------------TTCTTCCEEECCSCCCEEECC-CC--EEEEEESEEECCSSEEE-EC
T ss_pred CCCEEECCCCcCCccCchhhh-------------ccCCCCCEEeCcCCcCccchh-hh--CCCCCCCEEECCCCccc-cc
Confidence 99999999998888886 42 346788889988876543333 22 56789999999987422 11
Q ss_pred cccCCcCCCCCCCCc-cceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHhc-------cCCccceE
Q 044755 761 VDSKERVPLDDAFPI-LESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAK-------CLPRLERI 832 (1079)
Q Consensus 761 ~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~-------~l~~L~~L 832 (1079)
......+++ |+.|+++++. +..++. .+....+++|+.|++++|. +....+ ..+. .+++|+.|
T Consensus 369 ------p~~l~~l~~~L~~L~Ls~N~-l~~lp~-~~~~~~l~~L~~L~Ls~N~-l~~~~p-~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 369 ------PANFCGFTEQVENLSFAHNK-LKYIPN-IFDAKSVSVMSAIDFSYNE-IGSVDG-KNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp ------CTTSEEECTTCCEEECCSSC-CSSCCS-CCCTTCSSCEEEEECCSSC-TTTTTT-CSSCTTCSSCCCCCCEEEE
T ss_pred ------cHhhhhhcccCcEEEccCCc-Ccccch-hhhhcccCccCEEECcCCc-CCCcch-hhhcccccccccCCCCCEE
Confidence 112256778 9999998864 445432 1222235689999999964 433222 1122 45689999
Q ss_pred eeccccccccccccccccccccccccccccccEEecCCCCCccccccCcccccccccccccccccccccccccccccccc
Q 044755 833 AVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGMHETCSNKISSFEDKLDISSALF 912 (1079)
Q Consensus 833 ~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1079)
+++++. +..++. .....+++|+.|+++++. ++.++... + ....
T Consensus 439 ~Ls~N~-l~~lp~---------~~~~~l~~L~~L~Ls~N~-l~~i~~~~-------------------~-------~~~~ 481 (636)
T 4eco_A 439 NLSNNQ-ISKFPK---------ELFSTGSPLSSINLMGNM-LTEIPKNS-------------------L-------KDEN 481 (636)
T ss_dssp ECCSSC-CCSCCT---------HHHHTTCCCSEEECCSSC-CSBCCSSS-------------------S-------EETT
T ss_pred ECcCCc-cCcCCH---------HHHccCCCCCEEECCCCC-CCCcCHHH-------------------h-------cccc
Confidence 998875 333331 112247899999998864 44554321 0 0000
Q ss_pred cccccccccceeeecccceeeecCCCCcccccc--ccccceEEEEccCcccccccccchhhhccccceEEEeccc-----
Q 044755 913 NEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFL--CFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCK----- 985 (1079)
Q Consensus 913 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~--~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~----- 985 (1079)
.....+++|+.|++++|.++.+ |. .+. .+++|+.|++++| +++.+ +..+..+++|+.|++++|.
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~~l-----p~-~~~~~~l~~L~~L~Ls~N-~l~~i--p~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLTKL-----SD-DFRATTLPYLVGIDLSYN-SFSKF--PTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp EECTTGGGCCEEECCSSCCCBC-----CG-GGSTTTCTTCCEEECCSS-CCSSC--CCGGGGCSSCCEEECCSCBCTTCC
T ss_pred ccccccCCccEEECcCCcCCcc-----Ch-hhhhccCCCcCEEECCCC-CCCCc--ChhhhcCCCCCEEECCCCcccccC
Confidence 1122355999999999988865 22 333 7899999999998 66665 4566789999999997654
Q ss_pred -ccceeecccccccccCCcccccccCeeecccCCCccccCCCccccCCCCccEEEEecCCCc
Q 044755 986 -GLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGMHTSEWPALKLLKVSDCDQV 1046 (1079)
Q Consensus 986 -~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~L 1046 (1079)
....+ |..+.+ +++|+.|++++|. ++.+|..+. ++|+.|++++|+-.
T Consensus 553 ~l~~~~--p~~l~~-------l~~L~~L~Ls~N~-l~~ip~~~~----~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 553 RTLREW--PEGITL-------CPSLTQLQIGSND-IRKVNEKIT----PNISVLDIKDNPNI 600 (636)
T ss_dssp BCCCCC--CTTGGG-------CSSCCEEECCSSC-CCBCCSCCC----TTCCEEECCSCTTC
T ss_pred cccccC--hHHHhc-------CCCCCEEECCCCc-CCccCHhHh----CcCCEEECcCCCCc
Confidence 22222 444443 8999999999976 589988743 89999999998743
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=259.69 Aligned_cols=424 Identities=15% Similarity=0.159 Sum_probs=285.6
Q ss_pred cEEEecCCCCcccccCCcchhccCCcceEEEecCccccccC-ccccccccccEEeccccccCC--cccccCCcccceeec
Q 044755 530 EFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLP-SSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSF 606 (1079)
Q Consensus 530 r~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l 606 (1079)
++|++.++... .+ |..++ ++|++|++++|.+..+| ..+..+++|++|+|++|.++. |..++++++|++|++
T Consensus 3 ~~l~ls~n~l~-~i--p~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLI-HV--PKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCS-SC--CCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCcc-cc--ccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence 57788876543 56 76554 89999999999999886 579999999999999999988 678999999999999
Q ss_pred cCCcCcccChhhccCCcccEEcccccccccccC-hhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCC-
Q 044755 607 WGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIA-PNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRL- 684 (1079)
Q Consensus 607 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~-~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L- 684 (1079)
++|.+..+|.. .+++|++|++++| .+..++ +..++++++|++|++++|.+. . ..+..+++|
T Consensus 77 s~N~l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~-----------~---~~~~~l~~L~ 139 (520)
T 2z7x_B 77 SHNKLVKISCH--PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLE-----------K---SSVLPIAHLN 139 (520)
T ss_dssp CSSCCCEEECC--CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCC-----------G---GGGGGGTTSC
T ss_pred CCCceeecCcc--ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccc-----------h---hhccccccce
Confidence 99999999887 8999999999998 666542 345899999999999998764 1 234556666
Q ss_pred -cEEEEEeeCC---CCCCchhhhcccc--eeeee-------------eecCCcccceEeeccccc------ccccccccc
Q 044755 685 -TTLEVHVKND---NVLPEGFFARKLE--RFKIS-------------KLQGIKDVEYLCLDKSQD------VKNVLFDLD 739 (1079)
Q Consensus 685 -~~L~l~~~~~---~~~~~~~~~~~L~--~L~l~-------------~~~~l~~L~~L~L~~~~~------~~~~~~~l~ 739 (1079)
+.|+++.+.. ...|..+ ..+. .+.+. .+..+++|+.|+++++.. ....+..+
T Consensus 140 L~~L~l~~n~l~~~~~~~~~l--~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l- 216 (520)
T 2z7x_B 140 ISKVLLVLGETYGEKEDPEGL--QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL- 216 (520)
T ss_dssp EEEEEEEECTTTTSSCCTTTT--TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGG-
T ss_pred eeEEEeecccccccccccccc--cccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhh-
Confidence 9999999876 2233322 1221 22221 122356677777766531 11111112
Q ss_pred ccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCC--cCCCCCcceEEeecCCCCCcc
Q 044755 740 REGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS--VQSFNELKTIRVELCDQLSNI 817 (1079)
Q Consensus 740 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~--~~~~~~L~~L~l~~c~~l~~l 817 (1079)
..+++|+.|++.++.-...... ...+ ....++|+.|+++++.--..++...+. .+.+++|+.++++++.- .+
T Consensus 217 -~~l~~L~~L~l~~~~l~~~~~~--~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~ 290 (520)
T 2z7x_B 217 -QTNPKLSNLTLNNIETTWNSFI--RILQ-LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GF 290 (520)
T ss_dssp -GGCTTCCEEEEEEEEEEHHHHH--HHHH-HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CS
T ss_pred -ccccchhhccccccccCHHHHH--HHHH-HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ec
Confidence 4567888888776531110000 0000 012357888888876422133221110 15678888888887543 44
Q ss_pred cchHHhccC---CccceEeeccccccccccccccccccccccccccccccEEecCCCCCccccccCcccccccccccccc
Q 044755 818 FLLSAAKCL---PRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGMHETC 894 (1079)
Q Consensus 818 ~~~~~~~~l---~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~ 894 (1079)
|.. .+..+ ++|+.|.++++.-. .... ...+++|++|+++++. ++..
T Consensus 291 p~~-~~~~~~~~~~L~~L~l~~n~l~-~~~~-----------~~~l~~L~~L~Ls~n~-l~~~----------------- 339 (520)
T 2z7x_B 291 PQS-YIYEIFSNMNIKNFTVSGTRMV-HMLC-----------PSKISPFLHLDFSNNL-LTDT----------------- 339 (520)
T ss_dssp CTH-HHHHHHHTCCCSEEEEESSCCC-CCCC-----------CSSCCCCCEEECCSSC-CCTT-----------------
T ss_pred chh-hhhcccccCceeEEEcCCCccc-cccc-----------hhhCCcccEEEeECCc-cChh-----------------
Confidence 421 22222 56888888887532 2210 1357889999998874 2221
Q ss_pred cccccccccccccccccccccccccccceeeecccceeeecCCCCccccccccccceEEEEccCccccc-ccccchhhhc
Q 044755 895 SNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKY-IFSASMLGSF 973 (1079)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~-l~~~~~~~~l 973 (1079)
.+..+..+++|+.|++++|.+..+.. + +..+..+++|+.|++++| .++. + +...+..+
T Consensus 340 ----------------~~~~~~~l~~L~~L~L~~N~l~~l~~--~-~~~~~~l~~L~~L~Ls~N-~l~~~l-~~~~~~~l 398 (520)
T 2z7x_B 340 ----------------VFENCGHLTELETLILQMNQLKELSK--I-AEMTTQMKSLQQLDISQN-SVSYDE-KKGDCSWT 398 (520)
T ss_dssp ----------------TTTTCCCCSSCCEEECCSSCCCBHHH--H-HHHHTTCTTCCEEECCSS-CCBCCG-GGCSCCCC
T ss_pred ----------------hhhhhccCCCCCEEEccCCccCcccc--c-hHHHhhCCCCCEEECCCC-cCCccc-ccchhccC
Confidence 11234558999999999998886411 0 134678999999999999 5665 5 44457788
Q ss_pred cccceEEEecccccceeecccccccccCCcccccccCeeecccCCCccccCCCccccCCCCccEEEEecCCCceeeccc
Q 044755 974 EHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGMHTSEWPALKLLKVSDCDQVTVFDSE 1052 (1079)
Q Consensus 974 ~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~lp~~ 1052 (1079)
++|+.|++++|.--..+ +..+ .++|+.|++++| .++.+|.++. .+++|++|++++| +++.+|..
T Consensus 399 ~~L~~L~Ls~N~l~~~~--~~~l---------~~~L~~L~Ls~N-~l~~ip~~~~--~l~~L~~L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTI--FRCL---------PPRIKVLDLHSN-KIKSIPKQVV--KLEALQELNVASN-QLKSVPDG 462 (520)
T ss_dssp TTCCEEECCSSCCCGGG--GGSC---------CTTCCEEECCSS-CCCCCCGGGG--GCTTCCEEECCSS-CCCCCCTT
T ss_pred ccCCEEECcCCCCCcch--hhhh---------cccCCEEECCCC-cccccchhhh--cCCCCCEEECCCC-cCCccCHH
Confidence 99999999999532222 1111 269999999997 5779998765 7899999999997 58888886
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=1.5e-23 Score=257.03 Aligned_cols=494 Identities=19% Similarity=0.108 Sum_probs=292.5
Q ss_pred eccCCcCCCCccccccceeEEEecCCCCCCCCC--ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccc
Q 044755 490 VRNEDVWEWPDDIALKECYAISLRGCSIHELPE--GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLL 567 (1079)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~ 567 (1079)
+.+......|. ..+..++++.+++|.+..++. +..+++|++|++.+|.. ..+ +.+.|.++++|++|+|++|.++
T Consensus 38 c~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i-~~i--~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 38 CMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTI--EDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp CTTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-CEE--CTTTTTTCTTCCEEECTTCCCC
T ss_pred CCCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC-CCc--ChhHhcCCCCCCEEEccCCcCC
Confidence 33444444453 346789999999999988875 34799999999998754 345 6777899999999999999999
Q ss_pred ccCc-cccccccccEEeccccccCC-c-ccccCCcccceeeccCCcCcc--cChhhccCCcccEEcccccccccccChhh
Q 044755 568 LLPS-SIDLLVNLQTLCLVECMLDD-I-AIIGKLKNLEILSFWGSVIVM--LPEELGHLTKLRQLDLSNCFKLKVIAPNV 642 (1079)
Q Consensus 568 ~lp~-~i~~L~~L~~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~~~~~ 642 (1079)
.+|. .++++++|++|+|++|.++. + ..+++|++|++|++++|.+.. +|..++.+++|++|++++| .++.+++..
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 192 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTD 192 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGG
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-ccccccccc
Confidence 9875 47899999999999999888 3 568999999999999998765 4778899999999999997 788887776
Q ss_pred hhcccccc----eeecccccccccCCCCCc-------------hhhhcchhhhccCCCCcEEEEEeeCCCCCC---c---
Q 044755 643 ISRLVRLE----ELYMSNCFVEWDDEGPNS-------------ERINARLDELMHLPRLTTLEVHVKNDNVLP---E--- 699 (1079)
Q Consensus 643 l~~L~~L~----~L~l~~~~~~~~~~~~~~-------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~--- 699 (1079)
+..+.+++ .++++.+.+.....+... .........+..+..++...+......... .
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 272 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 272 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred ccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccc
Confidence 77776655 344444443211110000 000111223445555655555433211110 0
Q ss_pred hh--hhcccceeeeee-------------ecCCcccceEeeccccccccccccccccccCCCceeeccCCCCcceecccC
Q 044755 700 GF--FARKLERFKISK-------------LQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSK 764 (1079)
Q Consensus 700 ~~--~~~~L~~L~l~~-------------~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~ 764 (1079)
.. ....+....+.. +....++..+.+.++..... . ......+|+.|.+.++....
T Consensus 273 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~--~~~~~~~L~~L~l~~~~~~~------ 342 (635)
T 4g8a_A 273 SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--K--DFSYNFGWQHLELVNCKFGQ------ 342 (635)
T ss_dssp TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--G--GGGSCCCCSEEEEESCEESS------
T ss_pred cccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--c--ccccchhhhhhhcccccccC------
Confidence 00 011111111111 11234455555544332111 1 11334678888887763211
Q ss_pred CcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccc-hHHhccCCccceEeeccccccccc
Q 044755 765 ERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFL-LSAAKCLPRLERIAVINCRNIQEI 843 (1079)
Q Consensus 765 ~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~l~~L~~L~i~~c~~l~~l 843 (1079)
. ....++.|+.+.+.++... . ......+++|+.|.++++. +..... ......+.+|+.+++..+......
T Consensus 343 -~--~~~~l~~L~~l~l~~n~~~-~----~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~ 413 (635)
T 4g8a_A 343 -F--PTLKLKSLKRLTFTSNKGG-N----AFSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTISLKYLDLSFNGVITMS 413 (635)
T ss_dssp -C--CCCBCTTCCEEEEESCCSC-C----BCCCCBCTTCCEEECCSSC-CBEEEECCHHHHSCSCCCEEECCSCSEEEEC
T ss_pred -c--CcccchhhhhcccccccCC-C----Ccccccccccccchhhccc-cccccccccchhhhhhhhhhhcccccccccc
Confidence 0 1145667777777654321 1 1223457788888887733 322211 123345677777777655432111
Q ss_pred cccccccccccccccccccccEEecCCCCCccccccCcccccccccccccccccccccccccccccccccccccccccce
Q 044755 844 FVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEV 923 (1079)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 923 (1079)
.....+++|+.+.+..+......+... ......+.. ..+.. .............+++|+.
T Consensus 414 -----------~~~~~l~~L~~l~l~~~~~~~~~~~~~--~~~l~~l~~---l~ls~----n~l~~~~~~~~~~~~~L~~ 473 (635)
T 4g8a_A 414 -----------SNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIY---LDISH----THTRVAFNGIFNGLSSLEV 473 (635)
T ss_dssp -----------SCCTTCTTCCEEECTTSEEESTTSSCT--TTTCTTCCE---EECTT----SCCEECCTTTTTTCTTCCE
T ss_pred -----------ccccccccccchhhhhccccccccccc--ccccccccc---ccccc----cccccccccccccchhhhh
Confidence 123346667777766554332211110 000000000 00000 0000011123445789999
Q ss_pred eeecccceeeecCCCCccccccccccceEEEEccCcccccccccchhhhccccceEEEecccccceeecccccccccCCc
Q 044755 924 LEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPN 1003 (1079)
Q Consensus 924 L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~ 1003 (1079)
|++++|+.... ..+..+..+++|+.|+|++| +++.+ ++..+.++++|+.|++++| +++.+. +..+.+
T Consensus 474 L~Ls~N~~~~~----~~~~~~~~l~~L~~L~Ls~N-~L~~l-~~~~f~~l~~L~~L~Ls~N-~l~~l~-~~~~~~----- 540 (635)
T 4g8a_A 474 LKMAGNSFQEN----FLPDIFTELRNLTFLDLSQC-QLEQL-SPTAFNSLSSLQVLNMSHN-NFFSLD-TFPYKC----- 540 (635)
T ss_dssp EECTTCEEGGG----EECSCCTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECTTS-CCCBCC-CGGGTT-----
T ss_pred hhhhhcccccc----cCchhhhhccccCEEECCCC-ccCCc-ChHHHcCCCCCCEEECCCC-cCCCCC-hhHHhC-----
Confidence 99999854321 12335678899999999999 78877 4567889999999999998 466552 223333
Q ss_pred ccccccCeeecccCCCccccCCCccccCC-CCccEEEEecCC
Q 044755 1004 FVFPQVTSLRLSGLPELKCLYPGMHTSEW-PALKLLKVSDCD 1044 (1079)
Q Consensus 1004 ~~l~~L~~L~l~~c~~L~~l~~~~~~~~l-~sL~~L~i~~C~ 1044 (1079)
+++|+.|+++++ .++.++.+.. ..+ ++|++|++++.|
T Consensus 541 --l~~L~~L~Ls~N-~l~~~~~~~l-~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 541 --LNSLQVLDYSLN-HIMTSKKQEL-QHFPSSLAFLNLTQND 578 (635)
T ss_dssp --CTTCCEEECTTS-CCCBCCSSCT-TCCCTTCCEEECTTCC
T ss_pred --CCCCCEEECCCC-cCCCCCHHHH-HhhhCcCCEEEeeCCC
Confidence 899999999995 4666655422 134 689999998744
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.2e-23 Score=252.68 Aligned_cols=448 Identities=15% Similarity=0.118 Sum_probs=267.9
Q ss_pred eeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccccc-CccccccccccEEecc
Q 044755 507 CYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLV 585 (1079)
Q Consensus 507 ~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~ 585 (1079)
.+++.+.++.+..+|.... ++|+.|++.++... .+ +...|.++++|++|++++|.++.+ |..++.+++|++|+|+
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~-~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSIS-EL--RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCC-CC--CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCcc-cc--ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 3788888888888887554 78999999887643 34 556678899999999999999887 6678999999999999
Q ss_pred ccccCC-cccccCCcccceeeccCCcCcccC--hhhccCCcccEEcccccccccccChhhhhccccc--ceeeccccccc
Q 044755 586 ECMLDD-IAIIGKLKNLEILSFWGSVIVMLP--EELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRL--EELYMSNCFVE 660 (1079)
Q Consensus 586 ~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L--~~L~l~~~~~~ 660 (1079)
+|.++. |.. .+.+|++|++++|.+..+| ..++++++|++|++++| .+.... +..+++| ++|++++|.+.
T Consensus 109 ~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 109 HNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp TSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSCC
T ss_pred CCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeeccccc
Confidence 999888 444 8999999999999888764 68899999999999987 555432 4555555 99998887651
Q ss_pred ccCCCCCchhhhcchhhhccCCCCcEEEE--EeeCCCC-CCchh--hhcccceeeeee--------------ecCCcccc
Q 044755 661 WDDEGPNSERINARLDELMHLPRLTTLEV--HVKNDNV-LPEGF--FARKLERFKISK--------------LQGIKDVE 721 (1079)
Q Consensus 661 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l--~~~~~~~-~~~~~--~~~~L~~L~l~~--------------~~~l~~L~ 721 (1079)
.. ...+..+..+.. +.+.+ ..+.... ++... .+.+|+.+.+.. +.++++|+
T Consensus 183 ~~---------~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 183 IK---------GGETESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp CC---------SSSCCEEEECCE-EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred cc---------ccCcccccccCc-ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 00 111223333321 22333 2222211 11110 012233333221 12344555
Q ss_pred eEeecccccccccccccc-ccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeecccccccc-ccccCc-CCcC
Q 044755 722 YLCLDKSQDVKNVLFDLD-REGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLE-RICQDR-LSVQ 798 (1079)
Q Consensus 722 ~L~L~~~~~~~~~~~~l~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~i~~~~-~~~~ 798 (1079)
.|.+.++......+..+. ....++|+.|++.++.-...+... .+ . ...++|+.|.+.++.... .++... ...-
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~--~~-~-~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~ 328 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE--EF-T-YSETALKSLMIEHVKNQVFLFSKEALYSVF 328 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCC--CC-C-CCSCSCCEEEEEEEEECCCSSCHHHHHHHH
T ss_pred EEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccch--hh-h-cccccchheehhhcccceeecChhhhhhhh
Confidence 555544332211111110 012246777777665321111000 00 0 011445555444332111 000000 0000
Q ss_pred CCCCcceEEeecCCCCCcccchHHhccCCccceEeeccccccccccccccccccccccccccccccEEecCCCCCccccc
Q 044755 799 SFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFC 878 (1079)
Q Consensus 799 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~ 878 (1079)
..++|+.|++++|. +.... ....+++|++|+++++.-...++ .....+++|+.|+++++ +++.++
T Consensus 329 ~~~~L~~L~l~~n~-~~~~~---~~~~l~~L~~L~l~~n~l~~~~~----------~~~~~l~~L~~L~L~~N-~l~~~~ 393 (562)
T 3a79_B 329 AEMNIKMLSISDTP-FIHMV---CPPSPSSFTFLNFTQNVFTDSVF----------QGCSTLKRLQTLILQRN-GLKNFF 393 (562)
T ss_dssp HTCCCSEEEEESSC-CCCCC---CCSSCCCCCEEECCSSCCCTTTT----------TTCCSCSSCCEEECCSS-CCCBTT
T ss_pred ccCcceEEEccCCC-ccccc---CccCCCCceEEECCCCccccchh----------hhhcccCCCCEEECCCC-CcCCcc
Confidence 11457888887754 22221 11456788888887765332221 22345788888888775 344322
Q ss_pred cCcccccccccccccccccccccccccccccccccccccccccceeeecccceeeecCCCCccccccccccceEEEEccC
Q 044755 879 CEVKKNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKC 958 (1079)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c 958 (1079)
. .+..+..+++|+.|++++|.+... .+...+..+++|+.|++++|
T Consensus 394 ~-------------------------------~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 394 K-------------------------------VALMTKNMSSLETLDVSLNSLNSH----AYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp H-------------------------------HHHTTTTCTTCCEEECTTSCCBSC----CSSCCCCCCTTCCEEECCSS
T ss_pred c-------------------------------chhhhcCCCCCCEEECCCCcCCCc----cChhhhcCcccCCEEECCCC
Confidence 1 011234588999999999988761 13334567899999999998
Q ss_pred cccccccccchhhhc-cccceEEEecccccceeecccccccccCCcccccccCeeecccCCCccccCCCccccCCCCccE
Q 044755 959 PKLKYIFSASMLGSF-EHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGMHTSEWPALKL 1037 (1079)
Q Consensus 959 ~~l~~l~~~~~~~~l-~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~ 1037 (1079)
. ++.. .+..+ ++|+.|++++| .++.+ +.++.+ +++|+.|+++++ .++.+|... ...+++|+.
T Consensus 439 ~-l~~~----~~~~l~~~L~~L~L~~N-~l~~i--p~~~~~-------l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~ 501 (562)
T 3a79_B 439 M-LTGS----VFRCLPPKVKVLDLHNN-RIMSI--PKDVTH-------LQALQELNVASN-QLKSVPDGV-FDRLTSLQY 501 (562)
T ss_dssp C-CCGG----GGSSCCTTCSEEECCSS-CCCCC--CTTTTS-------SCCCSEEECCSS-CCCCCCTTS-TTTCTTCCC
T ss_pred C-CCcc----hhhhhcCcCCEEECCCC-cCccc--ChhhcC-------CCCCCEEECCCC-CCCCCCHHH-HhcCCCCCE
Confidence 4 5432 23344 68999999998 57766 444434 899999999985 588888862 236899999
Q ss_pred EEEecCCC
Q 044755 1038 LKVSDCDQ 1045 (1079)
Q Consensus 1038 L~i~~C~~ 1045 (1079)
|+++++|-
T Consensus 502 L~l~~N~~ 509 (562)
T 3a79_B 502 IWLHDNPW 509 (562)
T ss_dssp EECCSCCB
T ss_pred EEecCCCc
Confidence 99998763
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=5.7e-23 Score=240.47 Aligned_cols=319 Identities=23% Similarity=0.275 Sum_probs=160.9
Q ss_pred CCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccccCCcccccCCcccceee
Q 044755 526 CLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILS 605 (1079)
Q Consensus 526 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~ 605 (1079)
++++++|.+.++... .+ +. +..+++|++|++++|.+..+|. ++.+++|++|++++|.+.....++++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~-~l--~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SI--DG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCC-CC--TT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred hccccEEecCCCCCc-cC--cc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEE
Confidence 445566665554321 12 21 3455666666666666655554 556666666666666555522255666666666
Q ss_pred ccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCc
Q 044755 606 FWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLT 685 (1079)
Q Consensus 606 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 685 (1079)
+++|.+..+|. +.++++|++|++++| .+..++. ++++++|++|+++++ .. ....+..+++|+
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~~-~~-------------~~~~~~~l~~L~ 180 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGNQ-VT-------------DLKPLANLTTLE 180 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEES-CC-------------CCGGGTTCTTCC
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCCc-cc-------------CchhhccCCCCC
Confidence 66665555543 555566666666555 3444432 455555555555321 10 011234444444
Q ss_pred EEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccccccccCCCceeeccCCCCcceecccCC
Q 044755 686 TLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKE 765 (1079)
Q Consensus 686 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~ 765 (1079)
.|+++.+....++ . ...+++|+.|++.++.-.. .
T Consensus 181 ~L~l~~n~l~~~~--------------------------------------~--l~~l~~L~~L~l~~n~l~~-~----- 214 (466)
T 1o6v_A 181 RLDISSNKVSDIS--------------------------------------V--LAKLTNLESLIATNNQISD-I----- 214 (466)
T ss_dssp EEECCSSCCCCCG--------------------------------------G--GGGCTTCSEEECCSSCCCC-C-----
T ss_pred EEECcCCcCCCCh--------------------------------------h--hccCCCCCEEEecCCcccc-c-----
Confidence 4444433222111 1 1345777777777663211 1
Q ss_pred cCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeeccccccccccc
Q 044755 766 RVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFV 845 (1079)
Q Consensus 766 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~ 845 (1079)
.+ ...+++|+.|++.++ .+..+. ....+++|+.|++++| .+..+++ +..+++|+.|++++|. +..++.
T Consensus 215 -~~-~~~l~~L~~L~l~~n-~l~~~~----~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~ 282 (466)
T 1o6v_A 215 -TP-LGILTNLDELSLNGN-QLKDIG----TLASLTNLTDLDLANN-QISNLAP---LSGLTKLTELKLGANQ-ISNISP 282 (466)
T ss_dssp -GG-GGGCTTCCEEECCSS-CCCCCG----GGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSSC-CCCCGG
T ss_pred -cc-ccccCCCCEEECCCC-Ccccch----hhhcCCCCCEEECCCC-ccccchh---hhcCCCCCEEECCCCc-cCcccc
Confidence 00 145677777777765 233331 2345677777777764 3444433 3456666666666653 222210
Q ss_pred cccccccccccccccccccEEecCCCCCccccccCcccccccccccccccccccccccccccccccccccccccccceee
Q 044755 846 VDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLE 925 (1079)
Q Consensus 846 ~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 925 (1079)
...+++|+.|++++|. ++.++ .+..+++|+.|+
T Consensus 283 -----------~~~l~~L~~L~L~~n~-l~~~~-----------------------------------~~~~l~~L~~L~ 315 (466)
T 1o6v_A 283 -----------LAGLTALTNLELNENQ-LEDIS-----------------------------------PISNLKNLTYLT 315 (466)
T ss_dssp -----------GTTCTTCSEEECCSSC-CSCCG-----------------------------------GGGGCTTCSEEE
T ss_pred -----------ccCCCccCeEEcCCCc-ccCch-----------------------------------hhcCCCCCCEEE
Confidence 2245566666665542 22111 122355666666
Q ss_pred ecccceeeecCCCCccccccccccceEEEEccCcccccccccchhhhccccceEEEecc
Q 044755 926 MNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHC 984 (1079)
Q Consensus 926 l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 984 (1079)
+++|.+..+. ++..+++|+.|++++| .++++ ..+..+++|+.|++++|
T Consensus 316 L~~n~l~~~~-------~~~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 316 LYFNNISDIS-------PVSSLTKLQRLFFYNN-KVSDV---SSLANLTNINWLSAGHN 363 (466)
T ss_dssp CCSSCCSCCG-------GGGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSS
T ss_pred CcCCcCCCch-------hhccCccCCEeECCCC-ccCCc---hhhccCCCCCEEeCCCC
Confidence 6666555431 1345566666666665 44444 23455566666666665
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=5.8e-23 Score=240.40 Aligned_cols=342 Identities=18% Similarity=0.227 Sum_probs=228.4
Q ss_pred ccceeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEe
Q 044755 504 LKECYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLC 583 (1079)
Q Consensus 504 ~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~ 583 (1079)
...++.+.+.++.+..++....+++|++|++.++... .+ +. +.++++|++|++++|.+..+|. ++.+++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~-~~--~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DI--TP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CC--GG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccC-Cc--hh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 5788999999999988888778999999999987643 33 33 7899999999999999999877 99999999999
Q ss_pred ccccccCCcccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccC
Q 044755 584 LVECMLDDIAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDD 663 (1079)
Q Consensus 584 L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 663 (1079)
+++|.+.....++++++|++|++++|.+..+| .++.+++|++|++.+ .+...++ ++++++|++|++++|.+.
T Consensus 119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~--- 190 (466)
T 1o6v_A 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVS--- 190 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred CCCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCC---
Confidence 99999988555999999999999999988886 489999999999964 4555544 899999999999998764
Q ss_pred CCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeecccccccccccccccccc
Q 044755 664 EGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGF 743 (1079)
Q Consensus 664 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~ 743 (1079)
.+..+..+++|+.|+++.+....++.. ..+++|+.|+++++.... . .. ...+
T Consensus 191 ----------~~~~l~~l~~L~~L~l~~n~l~~~~~~--------------~~l~~L~~L~l~~n~l~~-~-~~--l~~l 242 (466)
T 1o6v_A 191 ----------DISVLAKLTNLESLIATNNQISDITPL--------------GILTNLDELSLNGNQLKD-I-GT--LASL 242 (466)
T ss_dssp ----------CCGGGGGCTTCSEEECCSSCCCCCGGG--------------GGCTTCCEEECCSSCCCC-C-GG--GGGC
T ss_pred ----------CChhhccCCCCCEEEecCCcccccccc--------------cccCCCCEEECCCCCccc-c-hh--hhcC
Confidence 124577889999999988776555431 124455666665543221 1 11 1334
Q ss_pred CCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHh
Q 044755 744 SRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAA 823 (1079)
Q Consensus 744 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 823 (1079)
++|+.|++.++.- ..+. +...+++|+.|++++| .+..+++ +
T Consensus 243 ~~L~~L~l~~n~l-------------------------------~~~~----~~~~l~~L~~L~l~~n-~l~~~~~---~ 283 (466)
T 1o6v_A 243 TNLTDLDLANNQI-------------------------------SNLA----PLSGLTKLTELKLGAN-QISNISP---L 283 (466)
T ss_dssp TTCSEEECCSSCC-------------------------------CCCG----GGTTCTTCSEEECCSS-CCCCCGG---G
T ss_pred CCCCEEECCCCcc-------------------------------ccch----hhhcCCCCCEEECCCC-ccCcccc---c
Confidence 5555555555421 1110 1233455555555543 2333332 2
Q ss_pred ccCCccceEeeccccccccccccccccccccccccccccccEEecCCCCCccccccCccccccccccccccccccccccc
Q 044755 824 KCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGMHETCSNKISSFED 903 (1079)
Q Consensus 824 ~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (1079)
..+++|+.|++++|. +..++. ...+++|+.|++++|. ++.+.
T Consensus 284 ~~l~~L~~L~L~~n~-l~~~~~-----------~~~l~~L~~L~L~~n~-l~~~~------------------------- 325 (466)
T 1o6v_A 284 AGLTALTNLELNENQ-LEDISP-----------ISNLKNLTYLTLYFNN-ISDIS------------------------- 325 (466)
T ss_dssp TTCTTCSEEECCSSC-CSCCGG-----------GGGCTTCSEEECCSSC-CSCCG-------------------------
T ss_pred cCCCccCeEEcCCCc-ccCchh-----------hcCCCCCCEEECcCCc-CCCch-------------------------
Confidence 345555555555543 222210 2245566666666553 22211
Q ss_pred ccccccccccccccccccceeeecccceeeecCCCCccccccccccceEEEEccCcccccccccchhhhccccceEEEec
Q 044755 904 KLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICH 983 (1079)
Q Consensus 904 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 983 (1079)
....+++|+.|++++|.+..+ ..+..+++|+.|++++| .+++..+ +..+++|+.|++++
T Consensus 326 ----------~~~~l~~L~~L~l~~n~l~~~-------~~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 326 ----------PVSSLTKLQRLFFYNNKVSDV-------SSLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLND 384 (466)
T ss_dssp ----------GGGGCTTCCEEECCSSCCCCC-------GGGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCC
T ss_pred ----------hhccCccCCEeECCCCccCCc-------hhhccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccC
Confidence 122366777777777766553 13556777777777777 4555422 56677777777777
Q ss_pred cc
Q 044755 984 CK 985 (1079)
Q Consensus 984 c~ 985 (1079)
|+
T Consensus 385 n~ 386 (466)
T 1o6v_A 385 QA 386 (466)
T ss_dssp EE
T ss_pred Cc
Confidence 74
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=3e-23 Score=249.23 Aligned_cols=434 Identities=16% Similarity=0.140 Sum_probs=277.7
Q ss_pred CCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccC-ccccccccccEEeccccccCC--cccccCCccc
Q 044755 525 ECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLP-SSIDLLVNLQTLCLVECMLDD--IAIIGKLKNL 601 (1079)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L 601 (1079)
.+...+++++.++... .+ |..++ +.|++|++++|.+..+| ..++.+++|++|+|++|.++. |..++++++|
T Consensus 29 ~~~~~~~l~ls~~~L~-~i--p~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 29 SNELESMVDYSNRNLT-HV--PKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp ----CCEEECTTSCCC-SC--CTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred ccCCCcEEEcCCCCCc-cC--CCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence 4555688999887543 46 66553 78999999999999886 579999999999999999988 5789999999
Q ss_pred ceeeccCCcCcccChhhccCCcccEEcccccccccccC-hhhhhcccccceeecccccccccCCCCCchhhhcchhhhcc
Q 044755 602 EILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIA-PNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMH 680 (1079)
Q Consensus 602 ~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~-~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 680 (1079)
++|++++|.+..+|.. .+++|++|++++| .+..++ +..++++++|++|++++|.+. ...+..+..
T Consensus 103 ~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~-----------~~~~~~l~~ 168 (562)
T 3a79_B 103 EYLDVSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFR-----------QLDLLPVAH 168 (562)
T ss_dssp CEEECTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCC-----------TTTTGGGTT
T ss_pred CEEECCCCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccc-----------cCchhhhhh
Confidence 9999999999999987 8999999999998 677765 356999999999999998764 122334444
Q ss_pred CCCCcEEEEEeeCC--CCC-Cchhhhcccceeeee-------------eecCCcccceEeeccccc----cccccccccc
Q 044755 681 LPRLTTLEVHVKND--NVL-PEGFFARKLERFKIS-------------KLQGIKDVEYLCLDKSQD----VKNVLFDLDR 740 (1079)
Q Consensus 681 l~~L~~L~l~~~~~--~~~-~~~~~~~~L~~L~l~-------------~~~~l~~L~~L~L~~~~~----~~~~~~~l~~ 740 (1079)
+ +|+.|+++.+.. ... +..+..-..+.+.+. ....+++|+.++++++.. .......+
T Consensus 169 L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l-- 245 (562)
T 3a79_B 169 L-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL-- 245 (562)
T ss_dssp S-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHH--
T ss_pred c-eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHH--
Confidence 4 459999998876 332 222111011122221 022355666666665421 11111111
Q ss_pred cccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCC--CCCccc
Q 044755 741 EGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCD--QLSNIF 818 (1079)
Q Consensus 741 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~--~l~~l~ 818 (1079)
..+++|+.|.+.++.-..... ... +.....++|++|+++++.--..++...+. ...++|+.|.+.++. .+ .+|
T Consensus 246 ~~l~~L~~L~L~~~~l~~~~~--~~~-~~~~~~~~L~~L~l~~n~l~~~ip~~~~~-~~~~~L~~L~~~~~~~~~~-~~p 320 (562)
T 3a79_B 246 TRGPTLLNVTLQHIETTWKCS--VKL-FQFFWPRPVEYLNIYNLTITERIDREEFT-YSETALKSLMIEHVKNQVF-LFS 320 (562)
T ss_dssp HSCSSCEEEEEEEEEECHHHH--HHH-HHHHTTSSEEEEEEEEEEECSCCCCCCCC-CCSCSCCEEEEEEEEECCC-SSC
T ss_pred hccCcceEEEecCCcCcHHHH--HHH-HHhhhcccccEEEEeccEeeccccchhhh-cccccchheehhhccccee-ecC
Confidence 345666666665542100000 000 00012347888888776422233221110 012444544444322 22 333
Q ss_pred chHHhc--cCCccceEeeccccccccccccccccccccccccccccccEEecCCCCCccccccCcccccccccccccccc
Q 044755 819 LLSAAK--CLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGMHETCSN 896 (1079)
Q Consensus 819 ~~~~~~--~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~ 896 (1079)
...... .-++|+.|.++++.-. .+.. ...+++|++|+++++. ++..
T Consensus 321 ~~~~~~~~~~~~L~~L~l~~n~~~-~~~~-----------~~~l~~L~~L~l~~n~-l~~~------------------- 368 (562)
T 3a79_B 321 KEALYSVFAEMNIKMLSISDTPFI-HMVC-----------PPSPSSFTFLNFTQNV-FTDS------------------- 368 (562)
T ss_dssp HHHHHHHHHTCCCSEEEEESSCCC-CCCC-----------CSSCCCCCEEECCSSC-CCTT-------------------
T ss_pred hhhhhhhhccCcceEEEccCCCcc-cccC-----------ccCCCCceEEECCCCc-cccc-------------------
Confidence 211111 1256888888887532 1110 1357889999998864 2221
Q ss_pred cccccccccccccccccccccccccceeeecccceeeecCCCCccccccccccceEEEEccCcccccccccchhhhcccc
Q 044755 897 KISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHL 976 (1079)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 976 (1079)
.+..+..+++|+.|++++|.++.+.. .+..+..+++|+.|++++| +++...+...+..+++|
T Consensus 369 --------------~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 369 --------------VFQGCSTLKRLQTLILQRNGLKNFFK---VALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESI 430 (562)
T ss_dssp --------------TTTTCCSCSSCCEEECCSSCCCBTTH---HHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTC
T ss_pred --------------hhhhhcccCCCCEEECCCCCcCCccc---chhhhcCCCCCCEEECCCC-cCCCccChhhhcCcccC
Confidence 11234558999999999998886421 0134678899999999999 56652244567789999
Q ss_pred ceEEEecccccceeecccccccccCCcccc-cccCeeecccCCCccccCCCccccCCCCccEEEEecCCCceeeccc
Q 044755 977 QHLEICHCKGLQEIISKEGADDQVLPNFVF-PQVTSLRLSGLPELKCLYPGMHTSEWPALKLLKVSDCDQVTVFDSE 1052 (1079)
Q Consensus 977 ~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~lp~~ 1052 (1079)
+.|++++|. ++... +. . + ++|+.|++++| .++.+|.+.. .+++|++|+++++ +++.+|.+
T Consensus 431 ~~L~l~~n~-l~~~~-~~---~-------l~~~L~~L~L~~N-~l~~ip~~~~--~l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 431 LVLNLSSNM-LTGSV-FR---C-------LPPKVKVLDLHNN-RIMSIPKDVT--HLQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp CEEECCSSC-CCGGG-GS---S-------CCTTCSEEECCSS-CCCCCCTTTT--SSCCCSEEECCSS-CCCCCCTT
T ss_pred CEEECCCCC-CCcch-hh---h-------hcCcCCEEECCCC-cCcccChhhc--CCCCCCEEECCCC-CCCCCCHH
Confidence 999999995 33210 11 1 3 69999999997 6889998866 7899999999885 58888886
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=2.3e-22 Score=246.59 Aligned_cols=471 Identities=16% Similarity=0.184 Sum_probs=277.9
Q ss_pred cCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCc-cccccccccEEeccccccCC
Q 044755 513 RGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECMLDD 591 (1079)
Q Consensus 513 ~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~ 591 (1079)
++.+...+|..+. +.++.|+++++.. ..+ +...|.++++|++|+|++|.|+.+|+ .|++|++|++|+|++|.++.
T Consensus 39 ~~~~l~~vP~~lp-~~~~~LdLs~N~i-~~l--~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 39 MELNFYKIPDNLP-FSTKNLDLSFNPL-RHL--GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp TTSCCSSCCSSSC-TTCCEEECTTSCC-CEE--CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCcCccCCCCC-cCCCEEEeeCCCC-CCC--CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence 3445566776543 4799999999754 456 77778999999999999999999865 58999999999999999988
Q ss_pred -c-ccccCCcccceeeccCCcCcccChh-hccCCcccEEcccccccccccC-hhhhhcccccceeecccccccccCCCCC
Q 044755 592 -I-AIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIA-PNVISRLVRLEELYMSNCFVEWDDEGPN 667 (1079)
Q Consensus 592 -~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~-~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 667 (1079)
| ..+++|.+|++|++++|.+..+|.. ++++++|++|++++| .+..++ +..++.+++|++|++++|.+...
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~----- 188 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSI----- 188 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEE-----
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcccccc-----
Confidence 4 6789999999999999999999764 899999999999998 565543 45588999999999999876410
Q ss_pred chhhhcchhhhccCCC-CcEEEEEeeCCCCCCchhh-hcccceeeeee-----------ecCCcccceEeeccc--cccc
Q 044755 668 SERINARLDELMHLPR-LTTLEVHVKNDNVLPEGFF-ARKLERFKISK-----------LQGIKDVEYLCLDKS--QDVK 732 (1079)
Q Consensus 668 ~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~-----------~~~l~~L~~L~L~~~--~~~~ 732 (1079)
....+..+..++. +..++++.+....++...+ ...+..+.+.. +.++..++...+... ....
T Consensus 189 ---~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 265 (635)
T 4g8a_A 189 ---YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 265 (635)
T ss_dssp ---CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred ---ccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccc
Confidence 0112233333322 2234444444443333221 11122222211 111222222221110 0000
Q ss_pred ccc----cc-------------------------ccccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccc
Q 044755 733 NVL----FD-------------------------LDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYN 783 (1079)
Q Consensus 733 ~~~----~~-------------------------l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 783 (1079)
... .. .....+.++..+.+.++.... + .....+.+|+.|.+.+
T Consensus 266 ~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~-------~~~~~~~~L~~L~l~~ 337 (635)
T 4g8a_A 266 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-V-------KDFSYNFGWQHLELVN 337 (635)
T ss_dssp CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-C-------GGGGSCCCCSEEEEES
T ss_pred ccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-c-------cccccchhhhhhhccc
Confidence 000 00 000122344444444332110 0 0002334566666655
Q ss_pred cccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeeccccccccccccccccccccccccccccc
Q 044755 784 LIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQL 863 (1079)
Q Consensus 784 ~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L 863 (1079)
+. +.. .....++.|+.+.+..+. ....+. ...+++|+.+.++++....... .+......++|
T Consensus 338 ~~-~~~-----~~~~~l~~L~~l~l~~n~-~~~~~~---~~~l~~L~~L~ls~n~l~~~~~--------~~~~~~~~~~L 399 (635)
T 4g8a_A 338 CK-FGQ-----FPTLKLKSLKRLTFTSNK-GGNAFS---EVDLPSLEFLDLSRNGLSFKGC--------CSQSDFGTISL 399 (635)
T ss_dssp CE-ESS-----CCCCBCTTCCEEEEESCC-SCCBCC---CCBCTTCCEEECCSSCCBEEEE--------CCHHHHSCSCC
T ss_pred cc-ccC-----cCcccchhhhhccccccc-CCCCcc---cccccccccchhhccccccccc--------cccchhhhhhh
Confidence 42 111 122346667777776633 222221 1346777777776644221111 01123346778
Q ss_pred cEEecCCCCCccccccCcccccccccccccccccccccccccccccccccccccccccceeeecccceeeecCCCCcccc
Q 044755 864 RTLCLGSLPELTSFCCEVKKNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAM 943 (1079)
Q Consensus 864 ~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 943 (1079)
+.|++..+.... ++.... ....+ ....+................+++++.++++.|.+..... ..
T Consensus 400 ~~L~~~~~~~~~-~~~~~~---~l~~L------~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~-----~~ 464 (635)
T 4g8a_A 400 KYLDLSFNGVIT-MSSNFL---GLEQL------EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-----GI 464 (635)
T ss_dssp CEEECCSCSEEE-ECSCCT---TCTTC------CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCT-----TT
T ss_pred hhhhcccccccc-cccccc---ccccc------cchhhhhccccccccccccccccccccccccccccccccc-----cc
Confidence 888776654221 111000 00000 0000000000001111234557899999999998887632 34
Q ss_pred ccccccceEEEEccCcccccccccchhhhccccceEEEecccccceeecccccccccCCcccccccCeeecccCCCcccc
Q 044755 944 FLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCL 1023 (1079)
Q Consensus 944 l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l 1023 (1079)
+..+++|+.|++++|.....+ .+..+..+++|+.|++++| .++.+. +..+.+ +++|+.|+++++ +++.+
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~-~~~~~~~l~~L~~L~Ls~N-~L~~l~-~~~f~~-------l~~L~~L~Ls~N-~l~~l 533 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQC-QLEQLS-PTAFNS-------LSSLQVLNMSHN-NFFSL 533 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTS-CCCEEC-TTTTTT-------CTTCCEEECTTS-CCCBC
T ss_pred cccchhhhhhhhhhccccccc-CchhhhhccccCEEECCCC-ccCCcC-hHHHcC-------CCCCCEEECCCC-cCCCC
Confidence 567899999999999766655 3467888999999999999 566662 444544 899999999995 68888
Q ss_pred CCCccccCCCCccEEEEecCCCceeec
Q 044755 1024 YPGMHTSEWPALKLLKVSDCDQVTVFD 1050 (1079)
Q Consensus 1024 ~~~~~~~~l~sL~~L~i~~C~~L~~lp 1050 (1079)
+.... ..+++|++|+++++. |+.++
T Consensus 534 ~~~~~-~~l~~L~~L~Ls~N~-l~~~~ 558 (635)
T 4g8a_A 534 DTFPY-KCLNSLQVLDYSLNH-IMTSK 558 (635)
T ss_dssp CCGGG-TTCTTCCEEECTTSC-CCBCC
T ss_pred ChhHH-hCCCCCCEEECCCCc-CCCCC
Confidence 76432 368999999998864 55443
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=3.9e-23 Score=239.23 Aligned_cols=52 Identities=21% Similarity=0.162 Sum_probs=31.9
Q ss_pred cccceeeecccceeeecCCCCccccccccccceEEEEccCcccccccccchhhhccccceEEEeccc
Q 044755 919 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCK 985 (1079)
Q Consensus 919 ~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 985 (1079)
++|+.|++++|.++.++ . .+++|+.|++++| +++.++ . .+++|+.|++++|+
T Consensus 317 ~~L~~L~Ls~N~l~~lp-----~----~~~~L~~L~L~~N-~l~~lp--~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 317 PSLEELNVSNNKLIELP-----A----LPPRLERLIASFN-HLAEVP--E---LPQNLKQLHVEYNP 368 (454)
T ss_dssp TTCCEEECCSSCCSCCC-----C----CCTTCCEEECCSS-CCSCCC--C---CCTTCCEEECCSSC
T ss_pred CcCCEEECCCCcccccc-----c----cCCcCCEEECCCC-cccccc--c---hhhhccEEECCCCC
Confidence 46777777777666542 1 1467777777776 555552 1 35677777777763
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1e-22 Score=238.37 Aligned_cols=378 Identities=17% Similarity=0.170 Sum_probs=171.2
Q ss_pred cCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccc-cc-CccccccccccEEeccccccC
Q 044755 513 RGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLL-LL-PSSIDLLVNLQTLCLVECMLD 590 (1079)
Q Consensus 513 ~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~l-p~~i~~L~~L~~L~L~~~~l~ 590 (1079)
.++.+..+|. -.++|++|++.++... .+ +...|.++++|++|++++|.+. .+ |..+..+++|++|+|++|.+.
T Consensus 18 ~~~~l~~lp~--l~~~l~~L~Ls~n~i~-~~--~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~ 92 (455)
T 3v47_A 18 INRGLHQVPE--LPAHVNYVDLSLNSIA-EL--NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92 (455)
T ss_dssp CSSCCSSCCC--CCTTCCEEECCSSCCC-EE--CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC
T ss_pred CCCCcccCCC--CCCccCEEEecCCccC-cC--ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC
Confidence 3344444444 1245555555554332 12 2333455555555555555554 23 334555555666665555554
Q ss_pred C--cccccCCcccceeeccCCcCcc-cChh--hccCCcccEEcccccccccccCh-hhhhcccccceeecccccccccCC
Q 044755 591 D--IAIIGKLKNLEILSFWGSVIVM-LPEE--LGHLTKLRQLDLSNCFKLKVIAP-NVISRLVRLEELYMSNCFVEWDDE 664 (1079)
Q Consensus 591 ~--~~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~~~~-~~l~~L~~L~~L~l~~~~~~~~~~ 664 (1079)
. |..++++++|++|++++|.+.. .|.. +.++++|++|++++| .+..+++ ..++++++|++|++++|.+..
T Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~--- 168 (455)
T 3v47_A 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKS--- 168 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSC---
T ss_pred ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccc---
Confidence 4 3455555556666665555543 2222 555555566655555 3444422 224555556666555554431
Q ss_pred CCCchhhhcchhhhccC--CCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeecccccccccccccc-cc
Q 044755 665 GPNSERINARLDELMHL--PRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLD-RE 741 (1079)
Q Consensus 665 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~-~~ 741 (1079)
.....+..+ .+|+.|+++.+....++....... ....+..+++|+.|+++++.........+. ..
T Consensus 169 --------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 236 (455)
T 3v47_A 169 --------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE----KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236 (455)
T ss_dssp --------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH----HHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred --------cChhhhhccccccccccccccCcccccchhhcccc----ccccccccceeeeEecCCCcccccchhhhhccc
Confidence 111112222 345555555555444433211000 000011234566666666543222211110 01
Q ss_pred ccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccchH
Q 044755 742 GFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLS 821 (1079)
Q Consensus 742 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 821 (1079)
..++|+.|.+.++........ ...++.+.... +..-..++|+.|++++| .+..+++ .
T Consensus 237 ~~~~L~~L~l~~~~~~~~~~~-------~~~~~~~~~~~--------------~~~~~~~~L~~L~l~~n-~l~~~~~-~ 293 (455)
T 3v47_A 237 AGTKIQSLILSNSYNMGSSFG-------HTNFKDPDNFT--------------FKGLEASGVKTCDLSKS-KIFALLK-S 293 (455)
T ss_dssp TTCCEEEEECTTCTTTSCCTT-------CCSSCCCCTTT--------------TGGGTTSCCCEEECCSS-CCCEECT-T
T ss_pred cccceeeEeeccccccccccc-------hhhhccCcccc--------------cccccccCceEEEecCc-cccccch-h
Confidence 126677777766542211000 01111111100 11112456777777764 3333332 2
Q ss_pred HhccCCccceEeeccccccccccccccccccccccccccccccEEecCCCCCccccccCccccccccccccccccccccc
Q 044755 822 AAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGMHETCSNKISSF 901 (1079)
Q Consensus 822 ~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 901 (1079)
.+..+++|+.|+++++.-. .++ +.....+++|++|+++++. ++.+..
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~-~~~---------~~~~~~l~~L~~L~Ls~N~-l~~~~~---------------------- 340 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEIN-KID---------DNAFWGLTHLLKLNLSQNF-LGSIDS---------------------- 340 (455)
T ss_dssp TTTTCTTCCEEECTTSCCC-EEC---------TTTTTTCTTCCEEECCSSC-CCEECG----------------------
T ss_pred hcccCCCCCEEECCCCccc-ccC---------hhHhcCcccCCEEECCCCc-cCCcCh----------------------
Confidence 3445666666666655421 111 1122345566666665542 222211
Q ss_pred ccccccccccccccccccccceeeecccceeeecCCCCccccccccccceEEEEccCcccccccccchhhhccccceEEE
Q 044755 902 EDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEI 981 (1079)
Q Consensus 902 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i 981 (1079)
..+..+++|++|++++|.++.+. +..+..+++|++|++++| +++.+ ++..+..+++|+.|++
T Consensus 341 -----------~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 341 -----------RMFENLDKLEVLDLSYNHIRALG-----DQSFLGLPNLKELALDTN-QLKSV-PDGIFDRLTSLQKIWL 402 (455)
T ss_dssp -----------GGGTTCTTCCEEECCSSCCCEEC-----TTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEEC
T ss_pred -----------hHhcCcccCCEEECCCCcccccC-----hhhccccccccEEECCCC-ccccC-CHhHhccCCcccEEEc
Confidence 12233566666666666555541 223445666666666665 45544 2334555666666666
Q ss_pred eccc
Q 044755 982 CHCK 985 (1079)
Q Consensus 982 ~~c~ 985 (1079)
++|+
T Consensus 403 ~~N~ 406 (455)
T 3v47_A 403 HTNP 406 (455)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 6654
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.3e-22 Score=237.36 Aligned_cols=367 Identities=16% Similarity=0.165 Sum_probs=208.8
Q ss_pred CcceEEEecCcccccc-CccccccccccEEeccccccCC---cccccCCcccceeeccCCcCccc-ChhhccCCcccEEc
Q 044755 554 RKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVECMLDD---IAIIGKLKNLEILSFWGSVIVML-PEELGHLTKLRQLD 628 (1079)
Q Consensus 554 ~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~---~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~ 628 (1079)
++|++|+|++|.++.+ |..++.+++|++|++++|.+.. +..++++++|++|++++|.+..+ |..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 6788888888888876 6678888888888888887653 45678888888888888877766 66788888888888
Q ss_pred ccccccccccCh--hhhhcccccceeecccccccccCCCCCchhhhcchhh-hccCCCCcEEEEEeeCCCCCCchhhhcc
Q 044755 629 LSNCFKLKVIAP--NVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDE-LMHLPRLTTLEVHVKNDNVLPEGFFARK 705 (1079)
Q Consensus 629 l~~~~~l~~~~~--~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 705 (1079)
+++| .+....+ ..++++++|++|++++|.+. ...+.. +..+++|+.|+++.+.+...+..... .
T Consensus 110 L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~ 176 (455)
T 3v47_A 110 LTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIK-----------KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL-N 176 (455)
T ss_dssp CTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCC-----------SCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG-G
T ss_pred CCCC-CCCccccCcccccCcccCCEEECCCCccC-----------ccCcccccCCCCcccEEeCCCCcccccChhhhh-c
Confidence 8887 4554222 23677788888888777654 111222 55667777777766655443322110 0
Q ss_pred cceeeeeeecCCcccceEeeccccccccccccccccccCCCceeeccCCCCcceeccc--CCcCCCCCCCCccceeeccc
Q 044755 706 LERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDS--KERVPLDDAFPILESLNLYN 783 (1079)
Q Consensus 706 L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~~~~L~~L~l~~ 783 (1079)
+ ..++|+.|++.++......... .........+++|+.|++++
T Consensus 177 -----------l------------------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 221 (455)
T 3v47_A 177 -----------F------------------------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221 (455)
T ss_dssp -----------G------------------------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT
T ss_pred -----------c------------------------ccccccccccccCcccccchhhccccccccccccceeeeEecCC
Confidence 0 0123334444333210000000 00000001234455555544
Q ss_pred cccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeeccccccccccccccccccccccccccccc
Q 044755 784 LIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQL 863 (1079)
Q Consensus 784 ~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L 863 (1079)
+.-..............++|+.|.+++|........ ...++.+... .......++|
T Consensus 222 n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~~---------------------~~~~~~~~~L 277 (455)
T 3v47_A 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG---HTNFKDPDNF---------------------TFKGLEASGV 277 (455)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT---CCSSCCCCTT---------------------TTGGGTTSCC
T ss_pred CcccccchhhhhccccccceeeEeeccccccccccc---hhhhccCccc---------------------ccccccccCc
Confidence 321111100000001124444554444332211100 0000000000 0011134678
Q ss_pred cEEecCCCCCccccccCcccccccccccccccccccccccccccccccccccccccccceeeecccceeeecCCCCcccc
Q 044755 864 RTLCLGSLPELTSFCCEVKKNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAM 943 (1079)
Q Consensus 864 ~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 943 (1079)
+.|+++++. +..+.. ..+..+++|+.|++++|.+..+. ...
T Consensus 278 ~~L~l~~n~-l~~~~~---------------------------------~~~~~l~~L~~L~Ls~n~l~~~~-----~~~ 318 (455)
T 3v47_A 278 KTCDLSKSK-IFALLK---------------------------------SVFSHFTDLEQLTLAQNEINKID-----DNA 318 (455)
T ss_dssp CEEECCSSC-CCEECT---------------------------------TTTTTCTTCCEEECTTSCCCEEC-----TTT
T ss_pred eEEEecCcc-ccccch---------------------------------hhcccCCCCCEEECCCCcccccC-----hhH
Confidence 888887764 222111 12345788999999999888762 335
Q ss_pred ccccccceEEEEccCcccccccccchhhhccccceEEEecccccceeecccccccccCCcccccccCeeecccCCCcccc
Q 044755 944 FLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCL 1023 (1079)
Q Consensus 944 l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l 1023 (1079)
+..+++|+.|++++| .++.+ ++..+..+++|+.|++++|. ++.+ .+..+.+ +++|+.|+++++ .++.+
T Consensus 319 ~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~-------l~~L~~L~L~~N-~l~~~ 386 (455)
T 3v47_A 319 FWGLTHLLKLNLSQN-FLGSI-DSRMFENLDKLEVLDLSYNH-IRAL-GDQSFLG-------LPNLKELALDTN-QLKSV 386 (455)
T ss_dssp TTTCTTCCEEECCSS-CCCEE-CGGGGTTCTTCCEEECCSSC-CCEE-CTTTTTT-------CTTCCEEECCSS-CCSCC
T ss_pred hcCcccCCEEECCCC-ccCCc-ChhHhcCcccCCEEECCCCc-cccc-Chhhccc-------cccccEEECCCC-ccccC
Confidence 667889999999988 56665 34667788999999999884 5444 2334444 889999999884 57777
Q ss_pred CCCccccCCCCccEEEEecCC
Q 044755 1024 YPGMHTSEWPALKLLKVSDCD 1044 (1079)
Q Consensus 1024 ~~~~~~~~l~sL~~L~i~~C~ 1044 (1079)
|.... ..+++|++|++++++
T Consensus 387 ~~~~~-~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 387 PDGIF-DRLTSLQKIWLHTNP 406 (455)
T ss_dssp CTTTT-TTCTTCCEEECCSSC
T ss_pred CHhHh-ccCCcccEEEccCCC
Confidence 76532 367899999998755
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=6.2e-22 Score=229.29 Aligned_cols=335 Identities=15% Similarity=0.120 Sum_probs=163.2
Q ss_pred hccCCcceEEEecCccccccCccccccccccEEeccccccCCcccccCCcccceeeccCCcCcccChhhccCCcccEEcc
Q 044755 550 FTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDL 629 (1079)
Q Consensus 550 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 629 (1079)
+..+++|++|++++|.++.+| ++.+++|++|++++|.++..+ ++++++|++|++++|.+..+| ++++++|++|++
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNC 134 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEEC
Confidence 345555555555555555543 555555555555555555432 555555555555555555544 455555555555
Q ss_pred cccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhccccee
Q 044755 630 SNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERF 709 (1079)
Q Consensus 630 ~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L 709 (1079)
++| .++.++ ++++++|++|++++|... +.. .+..+++|+.|+++.+.+..+|
T Consensus 135 ~~N-~l~~l~---l~~l~~L~~L~l~~n~~~-----------~~~--~~~~l~~L~~L~ls~n~l~~l~----------- 186 (457)
T 3bz5_A 135 ARN-TLTEID---VSHNTQLTELDCHLNKKI-----------TKL--DVTPQTQLTTLDCSFNKITELD----------- 186 (457)
T ss_dssp TTS-CCSCCC---CTTCTTCCEEECTTCSCC-----------CCC--CCTTCTTCCEEECCSSCCCCCC-----------
T ss_pred CCC-ccceec---cccCCcCCEEECCCCCcc-----------ccc--ccccCCcCCEEECCCCccceec-----------
Confidence 554 344442 445555555555554221 000 2334455555555554444332
Q ss_pred eeeeecCCcccceEeeccccccccccccccccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccc
Q 044755 710 KISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLER 789 (1079)
Q Consensus 710 ~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 789 (1079)
+..+++|+.|+++++....- +...+++|+.|+++++.-.. + + ...+++|+.|+++++ .+..
T Consensus 187 ----l~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~~-i-------p-~~~l~~L~~L~l~~N-~l~~ 247 (457)
T 3bz5_A 187 ----VSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKLTE-I-------D-VTPLTQLTYFDCSVN-PLTE 247 (457)
T ss_dssp ----CTTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSC-C-------C-CTTCTTCSEEECCSS-CCSC
T ss_pred ----cccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcCCcccc-c-------C-ccccCCCCEEEeeCC-cCCC
Confidence 11233444444444332111 12344555555555542111 0 1 134555555555553 2222
Q ss_pred cccCcCCcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeeccccccccccccccccccccccccccccccEEecC
Q 044755 790 ICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLG 869 (1079)
Q Consensus 790 i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 869 (1079)
+ +.+.+++|+.|.+++ .+|+.|++++|..+..++ ...+++|+.|+++
T Consensus 248 ~-----~~~~l~~L~~L~l~~----------------n~L~~L~l~~n~~~~~~~------------~~~l~~L~~L~Ls 294 (457)
T 3bz5_A 248 L-----DVSTLSKLTTLHCIQ----------------TDLLEIDLTHNTQLIYFQ------------AEGCRKIKELDVT 294 (457)
T ss_dssp C-----CCTTCTTCCEEECTT----------------CCCSCCCCTTCTTCCEEE------------CTTCTTCCCCCCT
T ss_pred c-----CHHHCCCCCEEeccC----------------CCCCEEECCCCccCCccc------------ccccccCCEEECC
Confidence 2 123455555554433 134444455554444333 1235666666666
Q ss_pred CCCCccccccCcccccccccccccccccccccccccccccccccccccccccceeeecccceeeecCCCCcccccccccc
Q 044755 870 SLPELTSFCCEVKKNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQN 949 (1079)
Q Consensus 870 ~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~ 949 (1079)
+|+.+..++... ..+..+ .+..+++|+.|++++|+++.+ .+..+++
T Consensus 295 ~n~~l~~l~~~~--------------~~L~~L------------~l~~~~~L~~L~L~~N~l~~l--------~l~~l~~ 340 (457)
T 3bz5_A 295 HNTQLYLLDCQA--------------AGITEL------------DLSQNPKLVYLYLNNTELTEL--------DVSHNTK 340 (457)
T ss_dssp TCTTCCEEECTT--------------CCCSCC------------CCTTCTTCCEEECTTCCCSCC--------CCTTCTT
T ss_pred CCcccceeccCC--------------CcceEe------------chhhcccCCEEECCCCccccc--------ccccCCc
Confidence 666555544310 000000 122356788888888887764 2456788
Q ss_pred ceEEEEccCcccccccccchhhhccccceEEEecccccceeecccccccccCCcccccccCeeecccCCCccccCCCc
Q 044755 950 LTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGM 1027 (1079)
Q Consensus 950 L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~ 1027 (1079)
|+.|++++| +++++ ++|..|.+.++. +... . .+..|..+++++..--..+|..+
T Consensus 341 L~~L~l~~N-~l~~l---------~~L~~L~l~~n~-l~g~------~-------~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 341 LKSLSCVNA-HIQDF---------SSVGKIPALNNN-FEAE------G-------QTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CSEEECCSS-CCCBC---------TTGGGSSGGGTS-EEEE------E-------EEEECCCBCCBTTBEEEECCTTC
T ss_pred CcEEECCCC-CCCCc---------cccccccccCCc-EEec------c-------eeeecCccccccCcEEEEcChhH
Confidence 899998887 55543 345555444431 1111 0 15566777777644344666543
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=5.1e-22 Score=223.19 Aligned_cols=125 Identities=22% Similarity=0.262 Sum_probs=68.8
Q ss_pred CCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccccCCcccccCCccccee
Q 044755 525 ECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEIL 604 (1079)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L 604 (1079)
.+++|++|.+.++... .+ + .+..+++|++|++++|.++.+|. +..+++|++|++++|.+..++.++++++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~-~~--~--~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SI--Q--GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCC-CC--T--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccc-cc--h--hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEE
Confidence 3445555555544321 11 1 13556666666666666665554 56666666666666665554456666666666
Q ss_pred eccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeeccccc
Q 044755 605 SFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCF 658 (1079)
Q Consensus 605 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 658 (1079)
++++|.+..+|. +..+++|++|++++|..+...+. +..+++|++|++++|.
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESK 166 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSC
T ss_pred ECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCC
Confidence 666666555544 55566666666666544443322 5555556665555544
No 36
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=3.9e-22 Score=230.81 Aligned_cols=382 Identities=19% Similarity=0.126 Sum_probs=181.6
Q ss_pred CCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccc-ccCccccccccc-------------cEEeccccccC
Q 044755 525 ECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLL-LLPSSIDLLVNL-------------QTLCLVECMLD 590 (1079)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L-------------~~L~L~~~~l~ 590 (1079)
..++|+.|.+.++.. ..+ |.. +.++++|++|++++|.+. .+|.+++.+.+| ++|++++|.++
T Consensus 9 ~~~~L~~L~l~~n~l-~~i--P~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEM--PVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred ccccchhhhcccCch-hhC--Chh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence 445566666665544 444 444 366666777777666665 466666666654 66666666666
Q ss_pred CcccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchh
Q 044755 591 DIAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSER 670 (1079)
Q Consensus 591 ~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 670 (1079)
..+.+ ..+|++|++++|.+..+|.. +.+|++|++++| .+..++.. .++|++|++++|.+.
T Consensus 85 ~lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~~----~~~L~~L~L~~n~l~---------- 144 (454)
T 1jl5_A 85 SLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNN-NLKALSDL----PPLLEYLGVSNNQLE---------- 144 (454)
T ss_dssp CCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCSC----CTTCCEEECCSSCCS----------
T ss_pred cCCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCC-ccCcccCC----CCCCCEEECcCCCCC----------
Confidence 52111 35667777776666666642 356667777665 45544321 156667776666543
Q ss_pred hhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccccccccCCCceee
Q 044755 671 INARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLH 750 (1079)
Q Consensus 671 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~ 750 (1079)
..+ .++.+++|+.|+++.+.+..+|.. .++|+.|+++++.... + +. ...+++|+.|+
T Consensus 145 --~lp-~~~~l~~L~~L~l~~N~l~~lp~~----------------~~~L~~L~L~~n~l~~-l-~~--~~~l~~L~~L~ 201 (454)
T 1jl5_A 145 --KLP-ELQNSSFLKIIDVDNNSLKKLPDL----------------PPSLEFIAAGNNQLEE-L-PE--LQNLPFLTAIY 201 (454)
T ss_dssp --SCC-CCTTCTTCCEEECCSSCCSCCCCC----------------CTTCCEEECCSSCCSS-C-CC--CTTCTTCCEEE
T ss_pred --CCc-ccCCCCCCCEEECCCCcCcccCCC----------------cccccEEECcCCcCCc-C-cc--ccCCCCCCEEE
Confidence 111 356666677777666665555432 2355566665554322 1 11 24566777777
Q ss_pred ccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHhccCCccc
Q 044755 751 VQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLE 830 (1079)
Q Consensus 751 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~ 830 (1079)
+.++.-.. + + ...++|+.|+++++ .+..++ ..+.+++|++|++++| .+..++. .+++|+
T Consensus 202 l~~N~l~~-l-------~--~~~~~L~~L~l~~n-~l~~lp----~~~~l~~L~~L~l~~N-~l~~l~~-----~~~~L~ 260 (454)
T 1jl5_A 202 ADNNSLKK-L-------P--DLPLSLESIVAGNN-ILEELP----ELQNLPFLTTIYADNN-LLKTLPD-----LPPSLE 260 (454)
T ss_dssp CCSSCCSS-C-------C--CCCTTCCEEECCSS-CCSSCC----CCTTCTTCCEEECCSS-CCSSCCS-----CCTTCC
T ss_pred CCCCcCCc-C-------C--CCcCcccEEECcCC-cCCccc----ccCCCCCCCEEECCCC-cCCcccc-----cccccC
Confidence 76653111 0 0 22346777777665 333332 2446677777777763 4555443 246677
Q ss_pred eEeeccccccccccccccccccccccccccccccEEecCCCCCccccccCcccccccccccccccccccccccccccccc
Q 044755 831 RIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGMHETCSNKISSFEDKLDISSA 910 (1079)
Q Consensus 831 ~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1079)
.|+++++. +..++. .+++|+.|+++++. ++.++.
T Consensus 261 ~L~l~~N~-l~~l~~-------------~~~~L~~L~ls~N~-l~~l~~------------------------------- 294 (454)
T 1jl5_A 261 ALNVRDNY-LTDLPE-------------LPQSLTFLDVSENI-FSGLSE------------------------------- 294 (454)
T ss_dssp EEECCSSC-CSCCCC-------------CCTTCCEEECCSSC-CSEESC-------------------------------
T ss_pred EEECCCCc-ccccCc-------------ccCcCCEEECcCCc-cCcccC-------------------------------
Confidence 77776654 322220 23567777776653 332211
Q ss_pred cccccccccccceeeecccceeeecCCCCccccccccccceEEEEccCcccccccccchhhhccccceEEEeccccccee
Q 044755 911 LFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCKGLQEI 990 (1079)
Q Consensus 911 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i 990 (1079)
..++|+.|++++|.++.+.. ..++|+.|++++| +++.++ . .+++|+.|++++| .++.+
T Consensus 295 ------~~~~L~~L~l~~N~l~~i~~---------~~~~L~~L~Ls~N-~l~~lp--~---~~~~L~~L~L~~N-~l~~l 352 (454)
T 1jl5_A 295 ------LPPNLYYLNASSNEIRSLCD---------LPPSLEELNVSNN-KLIELP--A---LPPRLERLIASFN-HLAEV 352 (454)
T ss_dssp ------CCTTCCEEECCSSCCSEECC---------CCTTCCEEECCSS-CCSCCC--C---CCTTCCEEECCSS-CCSCC
T ss_pred ------cCCcCCEEECcCCcCCcccC---------CcCcCCEEECCCC-cccccc--c---cCCcCCEEECCCC-ccccc
Confidence 02567777777776665421 0146777777776 455441 1 2467777777776 34444
Q ss_pred ecccccccccCCcccccccCeeecccCCCcc--ccCCCccccCC-------------CCccEEEEecCCCce--eecccc
Q 044755 991 ISKEGADDQVLPNFVFPQVTSLRLSGLPELK--CLYPGMHTSEW-------------PALKLLKVSDCDQVT--VFDSEL 1053 (1079)
Q Consensus 991 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~--~l~~~~~~~~l-------------~sL~~L~i~~C~~L~--~lp~~l 1053 (1079)
+. .+++|+.|++++++-.. .+|.++. .+ ++|+.|++++++--. .+|.++
T Consensus 353 --p~----------~l~~L~~L~L~~N~l~~l~~ip~~l~--~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl 418 (454)
T 1jl5_A 353 --PE----------LPQNLKQLHVEYNPLREFPDIPESVE--DLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV 418 (454)
T ss_dssp --CC----------CCTTCCEEECCSSCCSSCCCCCTTCC--EEECCC--------------------------------
T ss_pred --cc----------hhhhccEEECCCCCCCcCCCChHHHH--hhhhcccccccccccCcCCEEECCCCcCCccccchhhH
Confidence 21 15677777777654322 3444432 22 667777777654222 455554
Q ss_pred ccc
Q 044755 1054 FSF 1056 (1079)
Q Consensus 1054 ~~~ 1056 (1079)
..+
T Consensus 419 ~~L 421 (454)
T 1jl5_A 419 EDL 421 (454)
T ss_dssp ---
T ss_pred hhe
Confidence 433
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.2e-21 Score=223.81 Aligned_cols=134 Identities=14% Similarity=0.240 Sum_probs=101.3
Q ss_pred ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCc-cccccccccEEeccccccCC--cccccCCc
Q 044755 523 GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECMLDD--IAIIGKLK 599 (1079)
Q Consensus 523 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~i~~L~ 599 (1079)
...+++++.|.+.++. ...+ |..+|.++++|++|++++|.+..+|. .++.+++|++|+|++|.+.. +..+++++
T Consensus 41 ~~~l~~l~~l~l~~~~-l~~l--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 41 DITLNNQKIVTFKNST-MRKL--PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp SGGGCCCSEEEEESCE-ESEE--CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccccCCceEEEecCCc-hhhC--ChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 3456778888887654 3445 66777888888888888888877654 67888888888888888776 45678888
Q ss_pred ccceeeccCCcCcccChh-hccCCcccEEcccccccccccChhhhhcccccceeeccccccc
Q 044755 600 NLEILSFWGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVE 660 (1079)
Q Consensus 600 ~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 660 (1079)
+|++|++++|.+..+|.. +.++++|++|++++| .+..+++..++++++|++|++++|.+.
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCC
Confidence 888888888888888776 477888888888886 677777666777888888888777553
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=2.2e-21 Score=224.68 Aligned_cols=284 Identities=16% Similarity=0.156 Sum_probs=215.0
Q ss_pred ccceeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEe
Q 044755 504 LKECYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLC 583 (1079)
Q Consensus 504 ~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~ 583 (1079)
...++++.+.++.+..+|....+++|+.|++.++... .+ + +..+++|++|++++|.++.+| ++.+++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~-~~--~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT-TL--D---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCS-CC--C---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCC-eE--c---cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 5788999999999998887668999999999997643 23 3 688999999999999999986 89999999999
Q ss_pred ccccccCCcccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccC
Q 044755 584 LVECMLDDIAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDD 663 (1079)
Q Consensus 584 L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 663 (1079)
+++|.++..+ ++++++|++|++++|.+..+| ++++++|++|++++|..+..++ ++.+++|++|++++|.+.
T Consensus 113 L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~--- 183 (457)
T 3bz5_A 113 CDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT--- 183 (457)
T ss_dssp CCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC---
T ss_pred CCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc---
Confidence 9999998853 899999999999999999885 8899999999999987676662 788999999999998765
Q ss_pred CCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeecccccccccccccccccc
Q 044755 664 EGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGF 743 (1079)
Q Consensus 664 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~ 743 (1079)
. +. +..+++|+.|+++.+.+..++ +..+++|+.|+++++.... ++...+
T Consensus 184 ------~----l~-l~~l~~L~~L~l~~N~l~~~~---------------l~~l~~L~~L~Ls~N~l~~-----ip~~~l 232 (457)
T 3bz5_A 184 ------E----LD-VSQNKLLNRLNCDTNNITKLD---------------LNQNIQLTFLDCSSNKLTE-----IDVTPL 232 (457)
T ss_dssp ------C----CC-CTTCTTCCEEECCSSCCSCCC---------------CTTCTTCSEEECCSSCCSC-----CCCTTC
T ss_pred ------e----ec-cccCCCCCEEECcCCcCCeec---------------cccCCCCCEEECcCCcccc-----cCcccc
Confidence 1 11 677889999999988776553 2346788999998876433 224678
Q ss_pred CCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHh
Q 044755 744 SRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAA 823 (1079)
Q Consensus 744 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 823 (1079)
++|+.|+++++.-.. + + ...+++|+.|.+.+ .+|+.|++++|..+..+|.
T Consensus 233 ~~L~~L~l~~N~l~~-~-------~-~~~l~~L~~L~l~~-----------------n~L~~L~l~~n~~~~~~~~---- 282 (457)
T 3bz5_A 233 TQLTYFDCSVNPLTE-L-------D-VSTLSKLTTLHCIQ-----------------TDLLEIDLTHNTQLIYFQA---- 282 (457)
T ss_dssp TTCSEEECCSSCCSC-C-------C-CTTCTTCCEEECTT-----------------CCCSCCCCTTCTTCCEEEC----
T ss_pred CCCCEEEeeCCcCCC-c-------C-HHHCCCCCEEeccC-----------------CCCCEEECCCCccCCcccc----
Confidence 999999999874221 1 1 25677787777654 2456666666665555542
Q ss_pred ccCCccceEeeccccccccccccccccccccccccccccccEEecCCCCCccccc
Q 044755 824 KCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFC 878 (1079)
Q Consensus 824 ~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~ 878 (1079)
..+++|+.|++++|+.+..++. ..++|+.|++++|++|+.+.
T Consensus 283 ~~l~~L~~L~Ls~n~~l~~l~~-------------~~~~L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 283 EGCRKIKELDVTHNTQLYLLDC-------------QAAGITELDLSQNPKLVYLY 324 (457)
T ss_dssp TTCTTCCCCCCTTCTTCCEEEC-------------TTCCCSCCCCTTCTTCCEEE
T ss_pred cccccCCEEECCCCcccceecc-------------CCCcceEechhhcccCCEEE
Confidence 3466777777777776666542 23455555555555555543
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=4.9e-21 Score=231.03 Aligned_cols=153 Identities=15% Similarity=0.241 Sum_probs=118.3
Q ss_pred ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCc-cccccccccEEeccccccCC--cccccCCc
Q 044755 523 GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECMLDD--IAIIGKLK 599 (1079)
Q Consensus 523 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~i~~L~ 599 (1079)
.+.+++++.|.+.++. ...+ |..+|.++++|++|+|++|.+..+|. .++.+++|++|+|++|.+.. |..+++++
T Consensus 47 ~l~l~~l~~l~l~~~~-l~~l--p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 47 DITLNNQKIVTFKNST-MRKL--PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp SGGGCCCSEEEESSCE-ESEE--CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cccCCCceEEEeeCCC-CCCc--CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 4457788888887754 3445 77778888999999999998887754 78889999999999988877 45678899
Q ss_pred ccceeeccCCcCcccChh-hccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhh
Q 044755 600 NLEILSFWGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDEL 678 (1079)
Q Consensus 600 ~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 678 (1079)
+|++|++++|.+..+|.. ++++++|++|++++| .+..+++..++++++|++|++++|.+.. . .+
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~---~~ 188 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH-----------V---DL 188 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSB-----------C---CG
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCC-----------c---Ch
Confidence 999999999988888876 478889999999887 6777777778888889999888876540 0 24
Q ss_pred ccCCCCcEEEEEeeC
Q 044755 679 MHLPRLTTLEVHVKN 693 (1079)
Q Consensus 679 ~~l~~L~~L~l~~~~ 693 (1079)
..+++|+.|+++.+.
T Consensus 189 ~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 189 SLIPSLFHANVSYNL 203 (597)
T ss_dssp GGCTTCSEEECCSSC
T ss_pred hhhhhhhhhhcccCc
Confidence 456667777666543
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=6.4e-21 Score=217.75 Aligned_cols=134 Identities=18% Similarity=0.241 Sum_probs=113.5
Q ss_pred cCCcceEEEecCccccccCcc-ccccccccEEeccccccCC--cccccCCcccceeeccCCcCcccCh-hhccCCcccEE
Q 044755 552 GMRKLRVVDFTRMQLLLLPSS-IDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIVMLPE-ELGHLTKLRQL 627 (1079)
Q Consensus 552 ~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L 627 (1079)
.+.++++|+++++.++.+|.. +..+++|++|++++|.+.. +..++++++|++|++++|.+..+|. .++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 578999999999999999987 5899999999999999987 4689999999999999999988854 58999999999
Q ss_pred cccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCC
Q 044755 628 DLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVL 697 (1079)
Q Consensus 628 ~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 697 (1079)
++++| .+..+|+..++++++|++|++++|.+. ......+..+++|+.|+++.+.+..+
T Consensus 123 ~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 123 VLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLE-----------RIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-----------BCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred ECCCC-ccCcCCHHHhcCCCCCcEEECCCCccC-----------ccChhhccCCCCCCEEECCCCcCCcc
Confidence 99998 788999887799999999999998764 12234467778888888876655443
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=1.1e-20 Score=222.36 Aligned_cols=314 Identities=19% Similarity=0.203 Sum_probs=203.0
Q ss_pred cEEEecCCCCcccccCCcchhccCCcceEEEecCcccccc-CccccccccccEEeccccccCC--cccccCCcccceeec
Q 044755 530 EFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSF 606 (1079)
Q Consensus 530 r~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l 606 (1079)
+.+...+.. ...+ |..+ .+.|++|+|++|.++.+ |..+..+++|++|+|++|.++. |..++++++|++|++
T Consensus 14 ~~v~c~~~~-l~~i--p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 14 RAVLCHRKR-FVAV--PEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp TEEECCSCC-CSSC--CSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCC-cCcC--CCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEEC
Confidence 345544432 3344 5544 35789999999999887 5678999999999999998877 678899999999999
Q ss_pred cCCcCcccChh-hccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCc
Q 044755 607 WGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLT 685 (1079)
Q Consensus 607 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 685 (1079)
++|.+..+|.. +.++++|++|++++| .+..+++..+.++++|++|++++|.+. ......+..+++|+
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLV-----------YISHRAFSGLNSLE 155 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCC-----------EECTTSSTTCTTCC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccc-----------eeChhhccCCCCCC
Confidence 99999888865 688999999999997 677777777889999999999888654 12234566788888
Q ss_pred EEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccccccccCCCceeeccCCCCcceecccCC
Q 044755 686 TLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKE 765 (1079)
Q Consensus 686 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~ 765 (1079)
.|+++.+.+..++...+ ..+++|+.|++.++.... +..
T Consensus 156 ~L~l~~n~l~~~~~~~l--------------------------------------~~l~~L~~L~l~~n~i~~-~~~--- 193 (477)
T 2id5_A 156 QLTLEKCNLTSIPTEAL--------------------------------------SHLHGLIVLRLRHLNINA-IRD--- 193 (477)
T ss_dssp EEEEESCCCSSCCHHHH--------------------------------------TTCTTCCEEEEESCCCCE-ECT---
T ss_pred EEECCCCcCcccChhHh--------------------------------------cccCCCcEEeCCCCcCcE-eCh---
Confidence 88888877666554321 122444444444432111 100
Q ss_pred cCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeeccccccccccc
Q 044755 766 RVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFV 845 (1079)
Q Consensus 766 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~ 845 (1079)
.....+++|+.|++.++..+..+... .....+|+.|++++| .++.++. ..+..+++|+.|+++++. +..++.
T Consensus 194 --~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~ 265 (477)
T 2id5_A 194 --YSFKRLYRLKVLEISHWPYLDTMTPN---CLYGLNLTSLSITHC-NLTAVPY-LAVRHLVYLRFLNLSYNP-ISTIEG 265 (477)
T ss_dssp --TCSCSCTTCCEEEEECCTTCCEECTT---TTTTCCCSEEEEESS-CCCSCCH-HHHTTCTTCCEEECCSSC-CCEECT
T ss_pred --hhcccCcccceeeCCCCccccccCcc---cccCccccEEECcCC-cccccCH-HHhcCccccCeeECCCCc-CCccCh
Confidence 01134566666766666555444222 122347888888875 5666653 345667788888877764 323221
Q ss_pred cccccccccccccccccccEEecCCCCCccccccCcccccccccccccccccccccccccccccccccccccccccceee
Q 044755 846 VDGEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLE 925 (1079)
Q Consensus 846 ~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 925 (1079)
.....+++|+.|+|+++. ++.+.. ..+..+++|+.|+
T Consensus 266 ---------~~~~~l~~L~~L~L~~n~-l~~~~~---------------------------------~~~~~l~~L~~L~ 302 (477)
T 2id5_A 266 ---------SMLHELLRLQEIQLVGGQ-LAVVEP---------------------------------YAFRGLNYLRVLN 302 (477)
T ss_dssp ---------TSCTTCTTCCEEECCSSC-CSEECT---------------------------------TTBTTCTTCCEEE
T ss_pred ---------hhccccccCCEEECCCCc-cceECH---------------------------------HHhcCcccCCEEE
Confidence 123346677777776653 332211 1233467777777
Q ss_pred ecccceeeecCCCCccccccccccceEEEEccCc
Q 044755 926 MNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCP 959 (1079)
Q Consensus 926 l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~ 959 (1079)
+++|.++.+ +...|..+++|+.|++++|+
T Consensus 303 L~~N~l~~~-----~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 303 VSGNQLTTL-----EESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCSSCCSCC-----CGGGBSCGGGCCEEECCSSC
T ss_pred CCCCcCcee-----CHhHcCCCcccCEEEccCCC
Confidence 777766654 33345566777777777764
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=3.1e-20 Score=208.54 Aligned_cols=303 Identities=17% Similarity=0.198 Sum_probs=235.4
Q ss_pred cccceeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEE
Q 044755 503 ALKECYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTL 582 (1079)
Q Consensus 503 ~~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 582 (1079)
..+.++++.+.++.+..++....+++|++|.+.++... .+ +. +.++++|++|++++|.++.+| .+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~-~~--~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-DI--SP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CC--GG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccc-cc--hh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 36788999999999998887778999999999987543 33 33 789999999999999999886 69999999999
Q ss_pred eccccccCCcccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeeccccccccc
Q 044755 583 CLVECMLDDIAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWD 662 (1079)
Q Consensus 583 ~L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~ 662 (1079)
++++|.+.....+..+++|++|++++|.....+..+..+++|++|++++| .+..+++ ++.+++|++|++++|.+.
T Consensus 116 ~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~-- 190 (347)
T 4fmz_A 116 YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIE-- 190 (347)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCC--
T ss_pred ECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCccc--
Confidence 99999998855599999999999999954444556999999999999998 6777665 789999999999998764
Q ss_pred CCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccccccc
Q 044755 663 DEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREG 742 (1079)
Q Consensus 663 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~ 742 (1079)
.+..+..+++|+.|+++.+....++.. ..+++|+.|+++++...... . ...
T Consensus 191 -----------~~~~~~~l~~L~~L~l~~n~l~~~~~~--------------~~~~~L~~L~l~~n~l~~~~-~---~~~ 241 (347)
T 4fmz_A 191 -----------DISPLASLTSLHYFTAYVNQITDITPV--------------ANMTRLNSLKIGNNKITDLS-P---LAN 241 (347)
T ss_dssp -----------CCGGGGGCTTCCEEECCSSCCCCCGGG--------------GGCTTCCEEECCSSCCCCCG-G---GTT
T ss_pred -----------ccccccCCCccceeecccCCCCCCchh--------------hcCCcCCEEEccCCccCCCc-c---hhc
Confidence 122377889999999998877665541 23678888888887543221 1 367
Q ss_pred cCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHH
Q 044755 743 FSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSA 822 (1079)
Q Consensus 743 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 822 (1079)
+++|+.|+++++.- ..+ +....+++|+.|+++++ .+..+. ....+++|+.|++++|. +...++ ..
T Consensus 242 l~~L~~L~l~~n~l-~~~-------~~~~~l~~L~~L~l~~n-~l~~~~----~~~~l~~L~~L~L~~n~-l~~~~~-~~ 306 (347)
T 4fmz_A 242 LSQLTWLEIGTNQI-SDI-------NAVKDLTKLKMLNVGSN-QISDIS----VLNNLSQLNSLFLNNNQ-LGNEDM-EV 306 (347)
T ss_dssp CTTCCEEECCSSCC-CCC-------GGGTTCTTCCEEECCSS-CCCCCG----GGGGCTTCSEEECCSSC-CCGGGH-HH
T ss_pred CCCCCEEECCCCcc-CCC-------hhHhcCCCcCEEEccCC-ccCCCh----hhcCCCCCCEEECcCCc-CCCcCh-hH
Confidence 79999999998842 211 12267899999999987 455441 24678999999999974 555543 45
Q ss_pred hccCCccceEeeccccccccccccccccccccccccccccccEEecCCCC
Q 044755 823 AKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLP 872 (1079)
Q Consensus 823 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~ 872 (1079)
+..+++|+.|++++|+ +..++. ...+++|++|++++|+
T Consensus 307 l~~l~~L~~L~L~~n~-l~~~~~-----------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNH-ITDIRP-----------LASLSKMDSADFANQV 344 (347)
T ss_dssp HHTCTTCSEEECCSSS-CCCCGG-----------GGGCTTCSEESSSCC-
T ss_pred hhccccCCEEEccCCc-cccccC-----------hhhhhccceeehhhhc
Confidence 6779999999999987 433321 3468999999998875
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=3.1e-20 Score=223.99 Aligned_cols=135 Identities=18% Similarity=0.243 Sum_probs=115.9
Q ss_pred cCCcceEEEecCccccccCcc-ccccccccEEeccccccCC--cccccCCcccceeeccCCcCcccChh-hccCCcccEE
Q 044755 552 GMRKLRVVDFTRMQLLLLPSS-IDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQL 627 (1079)
Q Consensus 552 ~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L 627 (1079)
.+.++++|+++++.+..+|.. +..+++|++|+|++|.+.. +..++.+.+|++|++++|.+..+|.. ++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467899999999999999887 5889999999999999988 46899999999999999999988664 6999999999
Q ss_pred cccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCC
Q 044755 628 DLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLP 698 (1079)
Q Consensus 628 ~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 698 (1079)
++++| .+..+|+..++++++|++|++++|.+. ...+..+..+++|+.|+++++.+..++
T Consensus 129 ~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 129 VLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLE-----------RIEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-----------BCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred EeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCC-----------CCChhhhhcCCcCcEEECcCCCCCCcC
Confidence 99998 789999887899999999999998765 223445777888999888877665543
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.1e-19 Score=213.77 Aligned_cols=313 Identities=20% Similarity=0.188 Sum_probs=195.5
Q ss_pred EEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccccc-CccccccccccEEecccc
Q 044755 509 AISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVEC 587 (1079)
Q Consensus 509 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~ 587 (1079)
.+...+..+..+|..+ .++++.|++.++... .+ +...|.++++|++|+|++|.+..+ |..++++++|++|+|++|
T Consensus 15 ~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~-~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI-PTETRLLDLGKNRIK-TL--NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCSSCCSCC-CTTCSEEECCSSCCC-EE--CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCcCCCCC-CCCCcEEECCCCccc-eE--CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4455555566666544 256778887776543 33 445567788888888888887766 667788888888888888
Q ss_pred ccCC-c-ccccCCcccceeeccCCcCccc-ChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCC
Q 044755 588 MLDD-I-AIIGKLKNLEILSFWGSVIVML-PEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDE 664 (1079)
Q Consensus 588 ~l~~-~-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 664 (1079)
.++. + ..++++.+|++|++++|.+..+ |..+.++++|++|++++| .+..+++..++++++|++|++++|.+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~---- 165 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLT---- 165 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCS----
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCc----
Confidence 8777 3 4567788888888888877665 445777888888888876 566666666778888888888877654
Q ss_pred CCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccccccccC
Q 044755 665 GPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFS 744 (1079)
Q Consensus 665 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~ 744 (1079)
......+..+++|+.|+++.+.+..++... +..+++|+.|+++++.......... ....
T Consensus 166 -------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~------------~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~ 224 (477)
T 2id5_A 166 -------SIPTEALSHLHGLIVLRLRHLNINAIRDYS------------FKRLYRLKVLEISHWPYLDTMTPNC--LYGL 224 (477)
T ss_dssp -------SCCHHHHTTCTTCCEEEEESCCCCEECTTC------------SCSCTTCCEEEEECCTTCCEECTTT--TTTC
T ss_pred -------ccChhHhcccCCCcEEeCCCCcCcEeChhh------------cccCcccceeeCCCCccccccCccc--ccCc
Confidence 122345677778888888877665554321 2235566677776655444333222 1224
Q ss_pred CCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHhc
Q 044755 745 RLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAK 824 (1079)
Q Consensus 745 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~ 824 (1079)
+|+.|+++++.- ..+.. .....+++|+.|+++++. +..+... ....+++|+.|+++++ .+..+.+ ..+.
T Consensus 225 ~L~~L~l~~n~l-~~~~~-----~~~~~l~~L~~L~Ls~n~-l~~~~~~--~~~~l~~L~~L~L~~n-~l~~~~~-~~~~ 293 (477)
T 2id5_A 225 NLTSLSITHCNL-TAVPY-----LAVRHLVYLRFLNLSYNP-ISTIEGS--MLHELLRLQEIQLVGG-QLAVVEP-YAFR 293 (477)
T ss_dssp CCSEEEEESSCC-CSCCH-----HHHTTCTTCCEEECCSSC-CCEECTT--SCTTCTTCCEEECCSS-CCSEECT-TTBT
T ss_pred cccEEECcCCcc-cccCH-----HHhcCccccCeeECCCCc-CCccChh--hccccccCCEEECCCC-ccceECH-HHhc
Confidence 777777777632 11100 001456777777777653 4433221 2345677777777774 4555543 2345
Q ss_pred cCCccceEeeccccccccccccccccccccccccccccccEEecCCCC
Q 044755 825 CLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLP 872 (1079)
Q Consensus 825 ~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~ 872 (1079)
.+++|+.|+++++. ++.++. .....+++|+.|+|.+++
T Consensus 294 ~l~~L~~L~L~~N~-l~~~~~---------~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 294 GLNYLRVLNVSGNQ-LTTLEE---------SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TCTTCCEEECCSSC-CSCCCG---------GGBSCGGGCCEEECCSSC
T ss_pred CcccCCEEECCCCc-CceeCH---------hHcCCCcccCEEEccCCC
Confidence 66777777777763 333321 122346777777777655
No 45
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=4.4e-21 Score=232.70 Aligned_cols=433 Identities=16% Similarity=0.111 Sum_probs=260.3
Q ss_pred CCCcccEEEecCCCCcccccC-C-----------cchhccCCcceEEEecCccccc-cCcccccc--ccccEEeccccc-
Q 044755 525 ECLRLEFLHINPKDSFFEINN-P-----------CNFFTGMRKLRVVDFTRMQLLL-LPSSIDLL--VNLQTLCLVECM- 588 (1079)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~~-~-----------~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~L--~~L~~L~L~~~~- 588 (1079)
.+++|++|.+.++........ | ..++..+++|++|+|+++.+.. .+..+..+ .+|++|+|++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 578899999977543211000 1 1223478999999999998764 34556553 459999999987
Q ss_pred cCC---cccccCCcccceeeccCCcCcc-----cChhhccCCcccEEcccccccccccC----hhhhhcccccceeeccc
Q 044755 589 LDD---IAIIGKLKNLEILSFWGSVIVM-----LPEELGHLTKLRQLDLSNCFKLKVIA----PNVISRLVRLEELYMSN 656 (1079)
Q Consensus 589 l~~---~~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~~~----~~~l~~L~~L~~L~l~~ 656 (1079)
+.. +..+.++++|++|++++|.+.. ++.....+++|++|++++| .+..+. +..+.++++|++|++++
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 332 2334588999999999996543 3334567899999999987 454222 23356789999999998
Q ss_pred ccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccc
Q 044755 657 CFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLF 736 (1079)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~ 736 (1079)
|.+. .....+..+++|+.|++............ .. .+..+++|+.|.+.+... ..+.
T Consensus 230 ~~~~------------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~--------~l~~~~~L~~L~l~~~~~--~~l~ 286 (592)
T 3ogk_B 230 FEIL------------ELVGFFKAAANLEEFCGGSLNEDIGMPEK-YM--------NLVFPRKLCRLGLSYMGP--NEMP 286 (592)
T ss_dssp CBGG------------GGHHHHHHCTTCCEEEECBCCCCTTCTTS-SS--------CCCCCTTCCEEEETTCCT--TTGG
T ss_pred ccHH------------HHHHHHhhhhHHHhhcccccccccchHHH-HH--------HhhccccccccCccccch--hHHH
Confidence 7653 24567788899999999753322110000 00 122356777777766421 1111
Q ss_pred cccccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeec------
Q 044755 737 DLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEL------ 810 (1079)
Q Consensus 737 ~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~------ 810 (1079)
.+ ...+++|+.|++++|. +.. .........+++|+.|++.++..-..+. .....+++|++|++++
T Consensus 287 ~~-~~~~~~L~~L~Ls~~~-l~~----~~~~~~~~~~~~L~~L~L~~~~~~~~l~---~~~~~~~~L~~L~L~~g~~~~~ 357 (592)
T 3ogk_B 287 IL-FPFAAQIRKLDLLYAL-LET----EDHCTLIQKCPNLEVLETRNVIGDRGLE---VLAQYCKQLKRLRIERGADEQG 357 (592)
T ss_dssp GG-GGGGGGCCEEEETTCC-CCH----HHHHHHHTTCTTCCEEEEEGGGHHHHHH---HHHHHCTTCCEEEEECCCCSST
T ss_pred HH-HhhcCCCcEEecCCCc-CCH----HHHHHHHHhCcCCCEEeccCccCHHHHH---HHHHhCCCCCEEEeecCccccc
Confidence 11 2456889999998875 211 0000111567899999987432111110 0123578899999995
Q ss_pred ----CCCCCcccchHHhccCCccceEeecccccccccccccccccccccccc-ccccccEEecCC---CCCccccccCcc
Q 044755 811 ----CDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKI-EFSQLRTLCLGS---LPELTSFCCEVK 882 (1079)
Q Consensus 811 ----c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~-~~~~L~~L~L~~---c~~L~~l~~~~~ 882 (1079)
|+.++..........+++|++|.+ .|..+...... ... .+++|+.|++.+ |+.++..+...
T Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~---------~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~- 426 (592)
T 3ogk_B 358 MEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLE---------SIGTYLKNLCDFRLVLLDREERITDLPLDN- 426 (592)
T ss_dssp TSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHH---------HHHHHCCSCCEEEEEECSCCSCCSSCCCHH-
T ss_pred cccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHH---------HHHhhCCCCcEEEEeecCCCccccCchHHH-
Confidence 777775433334556899999998 45544332110 111 377899998874 55555432210
Q ss_pred cccccccccccccccccccccccccccccccccccccccceeeecccc--eeeecCCCCccccccccccceEEEEccCcc
Q 044755 883 KNREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVN--IEKIWHNQLPVAMFLCFQNLTRLILSKCPK 960 (1079)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~ 960 (1079)
........+++|+.|+++.|. ++... .......+++|+.|+|++| .
T Consensus 427 ---------------------------~~~~~~~~~~~L~~L~L~~~~~~l~~~~----~~~~~~~~~~L~~L~L~~n-~ 474 (592)
T 3ogk_B 427 ---------------------------GVRSLLIGCKKLRRFAFYLRQGGLTDLG----LSYIGQYSPNVRWMLLGYV-G 474 (592)
T ss_dssp ---------------------------HHHHHHHHCTTCCEEEEECCGGGCCHHH----HHHHHHSCTTCCEEEECSC-C
T ss_pred ---------------------------HHHHHHHhCCCCCEEEEecCCCCccHHH----HHHHHHhCccceEeeccCC-C
Confidence 000112347889999987652 33210 1111234788999999988 4
Q ss_pred cccccccchhhhccccceEEEecccccceeecccccccccCCcccccccCeeecccCCCccccCCCccccCCCCccEEEE
Q 044755 961 LKYIFSASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGMHTSEWPALKLLKV 1040 (1079)
Q Consensus 961 l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i 1040 (1079)
+++...+..+.++++|+.|++++|+ ++....+..... +++|++|++++|+ ++..........+|.|....+
T Consensus 475 l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~-------l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~ 545 (592)
T 3ogk_B 475 ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTK-------LPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELI 545 (592)
T ss_dssp SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHH-------CSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEE
T ss_pred CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHh-------cCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEe
Confidence 5543234556778889999999997 543211222222 7889999999887 544322222234666666655
Q ss_pred ec
Q 044755 1041 SD 1042 (1079)
Q Consensus 1041 ~~ 1042 (1079)
..
T Consensus 546 ~~ 547 (592)
T 3ogk_B 546 PS 547 (592)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=5.7e-19 Score=195.40 Aligned_cols=221 Identities=18% Similarity=0.237 Sum_probs=149.8
Q ss_pred cCCcceEEEecCccccccCccccccccccEEeccccccCC-cccccCCcccceeeccCCcCcccChhhccCCcccEEccc
Q 044755 552 GMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLS 630 (1079)
Q Consensus 552 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 630 (1079)
....+++|+|+++.+..+|..++.+++|++|+|++|.+.. |..++++.+|++|++++|.+..+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 4578899999999999999999999999999999999887 788999999999999999888999999999999999999
Q ss_pred ccccccccChhhhhc---------ccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchh
Q 044755 631 NCFKLKVIAPNVISR---------LVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGF 701 (1079)
Q Consensus 631 ~~~~l~~~~~~~l~~---------L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 701 (1079)
+|..+..+|.. ++. +++|++|++++|.+. ..+..++.+++|+.|++++|.+..+|..
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~------------~lp~~l~~l~~L~~L~L~~N~l~~l~~~- 224 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR------------SLPASIANLQNLKSLKIRNSPLSALGPA- 224 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC------------CCCGGGGGCTTCCEEEEESSCCCCCCGG-
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC------------cchHhhcCCCCCCEEEccCCCCCcCchh-
Confidence 98777777654 332 555555555555432 1223344555555555555444433321
Q ss_pred hhcccceeeeeeecCCcccceEeeccccccccccccccccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeec
Q 044755 702 FARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNL 781 (1079)
Q Consensus 702 ~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 781 (1079)
...+++|+.|++++|.....+ ......+++|+.|++
T Consensus 225 --------------------------------------l~~l~~L~~L~Ls~n~~~~~~------p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 225 --------------------------------------IHHLPKLEELDLRGCTALRNY------PPIFGGRAPLKRLIL 260 (328)
T ss_dssp --------------------------------------GGGCTTCCEEECTTCTTCCBC------CCCTTCCCCCCEEEC
T ss_pred --------------------------------------hccCCCCCEEECcCCcchhhh------HHHhcCCCCCCEEEC
Confidence 134466666666665433221 111245667777777
Q ss_pred cccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeec
Q 044755 782 YNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVI 835 (1079)
Q Consensus 782 ~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~ 835 (1079)
++|.....++. ..+.+++|+.|++++|+.+..+|. .+..+++|+.+.+.
T Consensus 261 ~~n~~~~~~p~---~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 261 KDCSNLLTLPL---DIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVP 309 (328)
T ss_dssp TTCTTCCBCCT---TGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECC
T ss_pred CCCCchhhcch---hhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCC
Confidence 76655544422 245677777777777777776664 44566666666554
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=6.4e-18 Score=188.00 Aligned_cols=290 Identities=15% Similarity=0.150 Sum_probs=188.4
Q ss_pred cccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCc-cccccccccEEeccccccCC--cccccCCccccee
Q 044755 528 RLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEIL 604 (1079)
Q Consensus 528 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L 604 (1079)
+++.+.+.++.. ..+ |..+ .+.|++|++++|.++.+|. .++.+++|++|+|++|.++. |..++++++|++|
T Consensus 32 ~l~~l~~~~~~l-~~l--p~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGL-EKV--PKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCC-CSC--CCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCCCc-ccc--CccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 566666665432 233 4333 2567888888888887765 57888888888888888776 5678888888888
Q ss_pred eccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCC
Q 044755 605 SFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRL 684 (1079)
Q Consensus 605 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 684 (1079)
++++|.+..+|..+. ++|++|++++| .+..+++..++++++|++|++++|.+. ..+.....+..+++|
T Consensus 106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 106 YLSKNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLK---------SSGIENGAFQGMKKL 173 (330)
T ss_dssp ECCSSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCC---------GGGBCTTGGGGCTTC
T ss_pred ECCCCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCC---------ccCcChhhccCCCCc
Confidence 888888888887654 78888888887 677777777888888888888877654 122344567778888
Q ss_pred cEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccccccccCCCceeeccCCCCcceecccC
Q 044755 685 TTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSK 764 (1079)
Q Consensus 685 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~ 764 (1079)
+.|+++.+....+|... .++|+.|+++++.........+ ..+++|+.|+++++.-.. +..
T Consensus 174 ~~L~l~~n~l~~l~~~~---------------~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~-~~~-- 233 (330)
T 1xku_A 174 SYIRIADTNITTIPQGL---------------PPSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNSISA-VDN-- 233 (330)
T ss_dssp CEEECCSSCCCSCCSSC---------------CTTCSEEECTTSCCCEECTGGG--TTCTTCCEEECCSSCCCE-ECT--
T ss_pred CEEECCCCccccCCccc---------------cccCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCce-eCh--
Confidence 88888887777666542 2467777777665332212222 456788888888774221 111
Q ss_pred CcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHH-----hccCCccceEeeccccc
Q 044755 765 ERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSA-----AKCLPRLERIAVINCRN 839 (1079)
Q Consensus 765 ~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-----~~~l~~L~~L~i~~c~~ 839 (1079)
.....+++|+.|+++++ .+..++ .....+++|++|++++| .++.+++... ....++|+.+++.+++-
T Consensus 234 ---~~~~~l~~L~~L~L~~N-~l~~lp---~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 234 ---GSLANTPHLRELHLNNN-KLVKVP---GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp ---TTGGGSTTCCEEECCSS-CCSSCC---TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred ---hhccCCCCCCEEECCCC-cCccCC---hhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcc
Confidence 11145778888888876 444442 22456788888888884 4666543211 11246788888887663
Q ss_pred cccccccccccccccccccccccccEEecCCC
Q 044755 840 IQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSL 871 (1079)
Q Consensus 840 l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 871 (1079)
. .+. ..+.....+++|+.++|+++
T Consensus 306 ~-~~~-------i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 306 Q-YWE-------IQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp C-GGG-------SCGGGGTTCCCGGGEEC---
T ss_pred c-ccc-------cCccccccccceeEEEeccc
Confidence 2 111 11223456778888888764
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=3e-18 Score=190.80 Aligned_cols=290 Identities=17% Similarity=0.184 Sum_probs=165.3
Q ss_pred cccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccC-ccccccccccEEeccccccCC--cccccCCccccee
Q 044755 528 RLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLP-SSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEIL 604 (1079)
Q Consensus 528 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L 604 (1079)
+++.+.+.++.. ..+ |..+ .+.|++|++++|.+..+| ..++.+++|++|++++|.++. |..++++++|++|
T Consensus 34 ~l~~l~~~~~~l-~~i--p~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGL-KAV--PKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCC-SSC--CSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCCCc-ccc--CCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 456666655432 233 4433 246777777777777663 457777777777777777665 4667777777777
Q ss_pred eccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCC
Q 044755 605 SFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRL 684 (1079)
Q Consensus 605 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 684 (1079)
++++|.+..+|..+. ++|++|++++| .+..+++..++++++|++|++++|.+. ..+.....+..+ +|
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLE---------NSGFEPGAFDGL-KL 174 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCB---------GGGSCTTSSCSC-CC
T ss_pred ECCCCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccc---------cCCCCcccccCC-cc
Confidence 777777777776554 67777777776 566666666677777777777776553 111223344444 67
Q ss_pred cEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccccccccCCCceeeccCCCCcceecccC
Q 044755 685 TTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSK 764 (1079)
Q Consensus 685 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~ 764 (1079)
+.|+++.+....+|... .++|+.|+++++.........+ ..+++|+.|+++++.-.. +..
T Consensus 175 ~~L~l~~n~l~~l~~~~---------------~~~L~~L~l~~n~i~~~~~~~l--~~l~~L~~L~L~~N~l~~-~~~-- 234 (332)
T 2ft3_A 175 NYLRISEAKLTGIPKDL---------------PETLNELHLDHNKIQAIELEDL--LRYSKLYRLGLGHNQIRM-IEN-- 234 (332)
T ss_dssp SCCBCCSSBCSSCCSSS---------------CSSCSCCBCCSSCCCCCCTTSS--TTCTTCSCCBCCSSCCCC-CCT--
T ss_pred CEEECcCCCCCccCccc---------------cCCCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCCc-CCh--
Confidence 77777766666655432 1355556665544322111112 455777777777663211 100
Q ss_pred CcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHh-----ccCCccceEeeccccc
Q 044755 765 ERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAA-----KCLPRLERIAVINCRN 839 (1079)
Q Consensus 765 ~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~-----~~l~~L~~L~i~~c~~ 839 (1079)
.....+++|+.|+++++ .+..++. ....+++|+.|++++ +.++.+++.... ...++|+.|.+.+++.
T Consensus 235 ---~~~~~l~~L~~L~L~~N-~l~~lp~---~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 235 ---GSLSFLPTLRELHLDNN-KLSRVPA---GLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp ---TGGGGCTTCCEEECCSS-CCCBCCT---TGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred ---hHhhCCCCCCEEECCCC-cCeecCh---hhhcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCcc
Confidence 01145677777877765 3444422 245677888888877 345555432111 1145677888877663
Q ss_pred cccccccccccccccccccccccccEEecCCCC
Q 044755 840 IQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLP 872 (1079)
Q Consensus 840 l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~ 872 (1079)
.. +. ..+.....+++|+.++++++.
T Consensus 307 ~~-~~-------~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 307 PY-WE-------VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CG-GG-------SCGGGGTTBCCSTTEEC----
T ss_pred cc-cc-------cCcccccccchhhhhhccccc
Confidence 21 10 011234457778888887664
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=4.3e-20 Score=223.95 Aligned_cols=387 Identities=14% Similarity=0.080 Sum_probs=252.0
Q ss_pred CCCcccEEEecCCCCcccccCCcchhcc-CCc-ceEEEecCcc-cc--ccCccccccccccEEeccccccCCc------c
Q 044755 525 ECLRLEFLHINPKDSFFEINNPCNFFTG-MRK-LRVVDFTRMQ-LL--LLPSSIDLLVNLQTLCLVECMLDDI------A 593 (1079)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-l~~-Lr~L~L~~~~-i~--~lp~~i~~L~~L~~L~L~~~~l~~~------~ 593 (1079)
.+++|+.|++.++...... +.. +.. ++. |++|++++|. +. .++..+..+++|++|+|++|.+.+. .
T Consensus 110 ~~~~L~~L~L~~~~i~~~~--~~~-l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 186 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLD--LDR-LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186 (592)
T ss_dssp HCTTCCEEEEESCBCCHHH--HHH-HHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred hCCCCCeEEeeccEecHHH--HHH-HHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence 5789999999987533222 222 233 344 9999999886 22 2444456889999999999986541 2
Q ss_pred cccCCcccceeeccCCcCc-----ccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCc
Q 044755 594 IIGKLKNLEILSFWGSVIV-----MLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNS 668 (1079)
Q Consensus 594 ~i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 668 (1079)
....+++|++|++++|.+. .++..+.++++|++|++++| .+..++ ..+.++++|++|+++.+....
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~-~~~~~~~~L~~L~l~~~~~~~------- 257 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELV-GFFKAAANLEEFCGGSLNEDI------- 257 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGH-HHHHHCTTCCEEEECBCCCCT-------
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHH-HHHhhhhHHHhhccccccccc-------
Confidence 4567899999999999775 44555678999999999997 666776 458999999999997532211
Q ss_pred hhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccccccccCCCce
Q 044755 669 ERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKH 748 (1079)
Q Consensus 669 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~ 748 (1079)
........+..+++|+.|+++......++.. +..+++|++|+++++.........+ ...+++|+.
T Consensus 258 -~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~-------------~~~~~~L~~L~Ls~~~l~~~~~~~~-~~~~~~L~~ 322 (592)
T 3ogk_B 258 -GMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL-------------FPFAAQIRKLDLLYALLETEDHCTL-IQKCPNLEV 322 (592)
T ss_dssp -TCTTSSSCCCCCTTCCEEEETTCCTTTGGGG-------------GGGGGGCCEEEETTCCCCHHHHHHH-HTTCTTCCE
T ss_pred -chHHHHHHhhccccccccCccccchhHHHHH-------------HhhcCCCcEEecCCCcCCHHHHHHH-HHhCcCCCE
Confidence 1123345667788999998876544444443 2236788899998877322222111 256799999
Q ss_pred eeccCCCCcceecccCCcCCCCCCCCccceeeccc----------cccccccccCcCCcCCCCCcceEEeecCCCCCccc
Q 044755 749 LHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYN----------LIKLERICQDRLSVQSFNELKTIRVELCDQLSNIF 818 (1079)
Q Consensus 749 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 818 (1079)
|++.++-... ........+++|+.|++.+ |..+........ ...+++|++|.+ +|+.++...
T Consensus 323 L~L~~~~~~~------~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l-~~~~~~L~~L~l-~~~~l~~~~ 394 (592)
T 3ogk_B 323 LETRNVIGDR------GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL-AQGCQELEYMAV-YVSDITNES 394 (592)
T ss_dssp EEEEGGGHHH------HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH-HHHCTTCSEEEE-EESCCCHHH
T ss_pred EeccCccCHH------HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH-HhhCccCeEEEe-ecCCccHHH
Confidence 9998431110 0000113578899999985 655543211100 234899999999 567776644
Q ss_pred chHHhccCCccceEeecc---ccccccccccccccccccccccccccccEEecCCCCC-ccccccCcccccccccccccc
Q 044755 819 LLSAAKCLPRLERIAVIN---CRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLGSLPE-LTSFCCEVKKNREAQGMHETC 894 (1079)
Q Consensus 819 ~~~~~~~l~~L~~L~i~~---c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~-L~~l~~~~~~~~~~~~~~~~~ 894 (1079)
.......+++|+.|++.. |..++..+... ..+.....+++|+.|+++.|.. ++.-
T Consensus 395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~----~~~~~~~~~~~L~~L~L~~~~~~l~~~----------------- 453 (592)
T 3ogk_B 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDN----GVRSLLIGCKKLRRFAFYLRQGGLTDL----------------- 453 (592)
T ss_dssp HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH----HHHHHHHHCTTCCEEEEECCGGGCCHH-----------------
T ss_pred HHHHHhhCCCCcEEEEeecCCCccccCchHHH----HHHHHHHhCCCCCEEEEecCCCCccHH-----------------
Confidence 333344589999999984 55555443211 0111133478999999987764 2211
Q ss_pred cccccccccccccccccccc-cccccccceeeecccceeeecCCCCccccccccccceEEEEccCcccccccccchhhhc
Q 044755 895 SNKISSFEDKLDISSALFNE-KVVLSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGSF 973 (1079)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~l 973 (1079)
.+.. ...+++|+.|++++|.+++.. ....+..+++|+.|+|++|+ +++...+.....+
T Consensus 454 ----------------~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l 512 (592)
T 3ogk_B 454 ----------------GLSYIGQYSPNVRWMLLGYVGESDEG----LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKL 512 (592)
T ss_dssp ----------------HHHHHHHSCTTCCEEEECSCCSSHHH----HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHC
T ss_pred ----------------HHHHHHHhCccceEeeccCCCCCHHH----HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhc
Confidence 0011 123788999999999766421 11234568999999999997 6654334566789
Q ss_pred cccceEEEecccccce
Q 044755 974 EHLQHLEICHCKGLQE 989 (1079)
Q Consensus 974 ~~L~~L~i~~c~~l~~ 989 (1079)
++|+.|++++|+ ++.
T Consensus 513 ~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 513 PSLRYLWVQGYR-ASM 527 (592)
T ss_dssp SSCCEEEEESCB-CCT
T ss_pred CccCeeECcCCc-CCH
Confidence 999999999997 543
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=1.6e-17 Score=184.70 Aligned_cols=125 Identities=23% Similarity=0.284 Sum_probs=101.6
Q ss_pred CCcceEEEecCccccccCccccccccccEEeccccccCC-c-ccccCCcccceeeccCCcCccc-ChhhccCCcccEEcc
Q 044755 553 MRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-I-AIIGKLKNLEILSFWGSVIVML-PEELGHLTKLRQLDL 629 (1079)
Q Consensus 553 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l 629 (1079)
..+|++++++++.++.+|..+. ++|++|++++|.++. + ..++++++|++|++++|.+..+ |..+.++++|++|++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred cCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 3478999999999999998765 689999999999988 3 5799999999999999999888 778999999999999
Q ss_pred cccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCC
Q 044755 630 SNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKND 694 (1079)
Q Consensus 630 ~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 694 (1079)
++| .++.+|... . ++|++|++++|.+. ......+..+++|+.|+++.+..
T Consensus 108 s~n-~l~~l~~~~-~--~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l 157 (330)
T 1xku_A 108 SKN-QLKELPEKM-P--KTLQELRVHENEIT-----------KVRKSVFNGLNQMIVVELGTNPL 157 (330)
T ss_dssp CSS-CCSBCCSSC-C--TTCCEEECCSSCCC-----------BBCHHHHTTCTTCCEEECCSSCC
T ss_pred CCC-cCCccChhh-c--ccccEEECCCCccc-----------ccCHhHhcCCccccEEECCCCcC
Confidence 997 688887653 2 78999999887654 22344566777777777765543
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=4e-18 Score=187.47 Aligned_cols=174 Identities=19% Similarity=0.240 Sum_probs=92.4
Q ss_pred cceeEEEecCCCCCC---CCCcc-CCCcccEEEecC-CCCcccccCCcchhccCCcceEEEecCcccc-ccCcccccccc
Q 044755 505 KECYAISLRGCSIHE---LPEGL-ECLRLEFLHINP-KDSFFEINNPCNFFTGMRKLRVVDFTRMQLL-LLPSSIDLLVN 578 (1079)
Q Consensus 505 ~~~~~l~l~~~~~~~---l~~~~-~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~ 578 (1079)
..++++.+.++.+.. +|..+ .+++|++|++.+ +.....+ |.. |.++++|++|++++|.+. .+|..++.+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~--p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI--PPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC--CGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccC--Chh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 356666666666542 44332 456666666653 3322222 322 355666666666666665 45555666666
Q ss_pred ccEEeccccccCC--cccccCCcccceeeccCCcCc-ccChhhccCC-cccEEcccccccccccChhhhhcccccceeec
Q 044755 579 LQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIV-MLPEELGHLT-KLRQLDLSNCFKLKVIAPNVISRLVRLEELYM 654 (1079)
Q Consensus 579 L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l 654 (1079)
|++|++++|.+.. |..++++++|++|++++|.+. .+|..++.+. +|++|++++| .+....+..++.+. |++|++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCC-CSEEEC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChHHhCCc-ccEEEC
Confidence 6666666666553 455666666666666666555 5565566555 5666666665 34322233355554 666666
Q ss_pred ccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCC
Q 044755 655 SNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKND 694 (1079)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 694 (1079)
++|.+. ......+..+++|+.|+++.+.+
T Consensus 205 s~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 205 SRNMLE-----------GDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp CSSEEE-----------ECCGGGCCTTSCCSEEECCSSEE
T ss_pred cCCccc-----------CcCCHHHhcCCCCCEEECCCCce
Confidence 555443 12233444555555555554443
No 52
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=2.5e-19 Score=217.44 Aligned_cols=129 Identities=19% Similarity=0.169 Sum_probs=61.7
Q ss_pred CCcccEEEecCCCCcccccCCcchhccCCcceEEEecCc-cccc--cCccccccccccEEeccccccCC--ccccc----
Q 044755 526 CLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRM-QLLL--LPSSIDLLVNLQTLCLVECMLDD--IAIIG---- 596 (1079)
Q Consensus 526 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~i~~--lp~~i~~L~~L~~L~L~~~~l~~--~~~i~---- 596 (1079)
+++|+.|.+.++...... +..+...+++|++|++++| .+.. ++..+..+++|++|+|++|.++. +..+.
T Consensus 104 ~~~L~~L~L~~~~~~~~~--~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDC--LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCBCCHHH--HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcEEcHHH--HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 455666666554322221 2222224556666666655 3332 33333456666666666665433 22222
Q ss_pred CCcccceeeccCCc--C--cccChhhccCCcccEEcccccccccccChhhhhcccccceeecccc
Q 044755 597 KLKNLEILSFWGSV--I--VMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 657 (1079)
Q Consensus 597 ~L~~L~~L~l~~~~--l--~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 657 (1079)
.+++|++|++++|. + ..++.-+.++++|++|++++|..+..++ ..+.++++|++|.++.+
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA-TLLQRAPQLEELGTGGY 245 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH-HHHHHCTTCSEEECSBC
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH-HHHhcCCcceEcccccc
Confidence 44566666666554 1 1112222345666666666554444432 23555566666655443
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=7.5e-18 Score=186.43 Aligned_cols=171 Identities=24% Similarity=0.325 Sum_probs=124.4
Q ss_pred cceeEEEecCCCCCCCCCcc-CCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEe
Q 044755 505 KECYAISLRGCSIHELPEGL-ECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLC 583 (1079)
Q Consensus 505 ~~~~~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~ 583 (1079)
..++.+.+.++.+..+|..+ .+++|+.|++.++... .+ |.. +.++++|++|++++|.+..+|..++.+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~l--p~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-EL--PDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CC--CSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-ch--hHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 46778888888888777644 5788888888877654 44 543 4778888888888888888888888888888888
Q ss_pred ccccccCC--ccccc---------CCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhccccccee
Q 044755 584 LVECMLDD--IAIIG---------KLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEEL 652 (1079)
Q Consensus 584 L~~~~l~~--~~~i~---------~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L 652 (1079)
+++|.+.. |..++ ++++|++|++++|.+..+|..++++++|++|++++| .+..+|+. ++++++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~-l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPA-IHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGG-GGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchh-hccCCCCCEE
Confidence 88876433 55544 388888888888888788888888888888888887 67777665 7788888888
Q ss_pred ecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEee
Q 044755 653 YMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVK 692 (1079)
Q Consensus 653 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 692 (1079)
++++|.+. +..+..+..+++|+.|+++.+
T Consensus 235 ~Ls~n~~~-----------~~~p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 235 DLRGCTAL-----------RNYPPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp ECTTCTTC-----------CBCCCCTTCCCCCCEEECTTC
T ss_pred ECcCCcch-----------hhhHHHhcCCCCCCEEECCCC
Confidence 88876553 223344556666666666654
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=8.2e-20 Score=214.05 Aligned_cols=372 Identities=18% Similarity=0.168 Sum_probs=198.9
Q ss_pred CcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccc-----ccCccccccccccEEeccccccCC--cccc-cCC
Q 044755 527 LRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLL-----LLPSSIDLLVNLQTLCLVECMLDD--IAII-GKL 598 (1079)
Q Consensus 527 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~--~~~i-~~L 598 (1079)
++|+.|++.++...... ...++..+++|++|++++|.+. .+|..+..+++|++|+|++|.+.. +..+ ..+
T Consensus 3 ~~l~~L~Ls~~~l~~~~--~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHH--HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchh--HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 45677777766543322 3344678888889999888876 456777788889999998888765 3333 234
Q ss_pred c----ccceeeccCCcCc-----ccChhhccCCcccEEcccccccccccChhhhh-----cccccceeecccccccccCC
Q 044755 599 K----NLEILSFWGSVIV-----MLPEELGHLTKLRQLDLSNCFKLKVIAPNVIS-----RLVRLEELYMSNCFVEWDDE 664 (1079)
Q Consensus 599 ~----~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~-----~L~~L~~L~l~~~~~~~~~~ 664 (1079)
. +|++|++++|.+. .+|..+..+++|++|++++| .+.......+. ..++|++|++++|.+.
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~---- 155 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS---- 155 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB----
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCC----
Confidence 4 6889999888776 45777888889999999887 45433222222 2457888888888664
Q ss_pred CCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeecccccccccccccc--ccc
Q 044755 665 GPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLD--REG 742 (1079)
Q Consensus 665 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~--~~~ 742 (1079)
..........+..+++|+.|+++++.+...........+. ...++|+.|+++++.........+. ...
T Consensus 156 ---~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 225 (461)
T 1z7x_W 156 ---AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK-------DSPCQLEALKLESCGVTSDNCRDLCGIVAS 225 (461)
T ss_dssp ---GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHH-------HSCCCCCEEECTTSCCBTTHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHh-------cCCCCceEEEccCCCCcHHHHHHHHHHHHh
Confidence 1111233455667778888888766543221110000000 0123455555555432211100000 012
Q ss_pred cCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccC---cCCcCCCCCcceEEeecCCCCCcccc
Q 044755 743 FSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQD---RLSVQSFNELKTIRVELCDQLSNIFL 819 (1079)
Q Consensus 743 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~---~~~~~~~~~L~~L~l~~c~~l~~l~~ 819 (1079)
+++|+.|+++++. +...... ......+++|++|++++| .++....
T Consensus 226 ~~~L~~L~Ls~n~-------------------------------l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~ 273 (461)
T 1z7x_W 226 KASLRELALGSNK-------------------------------LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGC 273 (461)
T ss_dssp CTTCCEEECCSSB-------------------------------CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHH
T ss_pred CCCccEEeccCCc-------------------------------CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHH
Confidence 3444444444432 1111000 000123566777777665 3443110
Q ss_pred ---hHHhccCCccceEeecccccccccccccccccccccc-ccccccccEEecCCCCCccccccCccccccccccccccc
Q 044755 820 ---LSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQ-KIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGMHETCS 895 (1079)
Q Consensus 820 ---~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~-~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~ 895 (1079)
...+..+++|++|+++++. +...... ..... ....++|++|++++|. ++....
T Consensus 274 ~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~-----~l~~~l~~~~~~L~~L~L~~n~-l~~~~~---------------- 330 (461)
T 1z7x_W 274 GDLCRVLRAKESLKELSLAGNE-LGDEGAR-----LLCETLLEPGCQLESLWVKSCS-FTAACC---------------- 330 (461)
T ss_dssp HHHHHHHHHCTTCCEEECTTCC-CHHHHHH-----HHHHHHTSTTCCCCEEECTTSC-CBGGGH----------------
T ss_pred HHHHHHHhhCCCcceEECCCCC-CchHHHH-----HHHHHhccCCccceeeEcCCCC-CchHHH----------------
Confidence 1233446777777777653 2211100 00000 0113577888887765 222100
Q ss_pred ccccccccccccccccccccccccccceeeecccceeeecCCCCcccccc-ccccceEEEEccCcccccc---cccchhh
Q 044755 896 NKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFL-CFQNLTRLILSKCPKLKYI---FSASMLG 971 (1079)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~-~l~~L~~L~i~~c~~l~~l---~~~~~~~ 971 (1079)
......+..+++|+.|++++|.+.+.....+. ..+. ..++|++|++++| .+++. ..+..+.
T Consensus 331 -------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~-~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~ 395 (461)
T 1z7x_W 331 -------------SHFSSVLAQNRFLLELQISNNRLEDAGVRELC-QGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLL 395 (461)
T ss_dssp -------------HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH-HHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHH
T ss_pred -------------HHHHHHHhhCCCccEEEccCCccccccHHHHH-HHHcCCCCceEEEECCCC-CCChhhHHHHHHHHH
Confidence 00112233467888888888866543111000 0111 1568888888888 45531 0134556
Q ss_pred hccccceEEEeccc
Q 044755 972 SFEHLQHLEICHCK 985 (1079)
Q Consensus 972 ~l~~L~~L~i~~c~ 985 (1079)
.+++|+.|++++|+
T Consensus 396 ~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 396 ANHSLRELDLSNNC 409 (461)
T ss_dssp HCCCCCEEECCSSS
T ss_pred hCCCccEEECCCCC
Confidence 67888888888874
No 55
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=2e-19 Score=218.24 Aligned_cols=435 Identities=17% Similarity=0.153 Sum_probs=257.1
Q ss_pred CCCcccEEEecCCCCcccccC-C-----------cchhccCCcceEEEecCccccc-cCcccc-ccccccEEecccc-cc
Q 044755 525 ECLRLEFLHINPKDSFFEINN-P-----------CNFFTGMRKLRVVDFTRMQLLL-LPSSID-LLVNLQTLCLVEC-ML 589 (1079)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~~-~-----------~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~-~L~~L~~L~L~~~-~l 589 (1079)
.+++|++|.+.++.....+.. | ..++..+++|++|+++++.+.. .+..+. .+++|++|+|++| .+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 578899999988653322200 1 1234578899999999998764 344554 6899999999999 45
Q ss_pred CC--c-ccccCCcccceeeccCCcCcc-----cChhhccCCcccEEcccccccccccChhh----hhcccccceeecccc
Q 044755 590 DD--I-AIIGKLKNLEILSFWGSVIVM-----LPEELGHLTKLRQLDLSNCFKLKVIAPNV----ISRLVRLEELYMSNC 657 (1079)
Q Consensus 590 ~~--~-~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~~~~~~----l~~L~~L~~L~l~~~ 657 (1079)
.. + ..+.++++|++|++++|.+.. ++.....+++|++|++++|. ..+.... +.++++|++|++++|
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 54 3 344589999999999997554 33333467899999999874 2333322 345699999999887
Q ss_pred cccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceE-eeccccccccccc
Q 044755 658 FVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYL-CLDKSQDVKNVLF 736 (1079)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L-~L~~~~~~~~~~~ 736 (1079)
... ......+..+++|+.|++..+... +... ....+.. .+.++++|+.| .+.+... ..+.
T Consensus 222 ~~~-----------~~l~~~~~~~~~L~~L~l~~~~~~-~~~~-~~~~l~~----~l~~~~~L~~Ls~~~~~~~--~~l~ 282 (594)
T 2p1m_B 222 VPL-----------EKLATLLQRAPQLEELGTGGYTAE-VRPD-VYSGLSV----ALSGCKELRCLSGFWDAVP--AYLP 282 (594)
T ss_dssp SCH-----------HHHHHHHHHCTTCSEEECSBCCCC-CCHH-HHHHHHH----HHHTCTTCCEEECCBTCCG--GGGG
T ss_pred CcH-----------HHHHHHHhcCCcceEcccccccCc-cchh-hHHHHHH----HHhcCCCcccccCCcccch--hhHH
Confidence 322 124566778889999987543321 1100 0000100 13456677776 2322211 1111
Q ss_pred cccccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeec------
Q 044755 737 DLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEL------ 810 (1079)
Q Consensus 737 ~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~------ 810 (1079)
.+ ...+++|+.|++++|. +.. .........+++|+.|.+.+|..-..+. .....+++|++|++.+
T Consensus 283 ~~-~~~~~~L~~L~L~~~~-l~~----~~l~~~~~~~~~L~~L~l~~~~~~~~l~---~l~~~~~~L~~L~L~~~~~~g~ 353 (594)
T 2p1m_B 283 AV-YSVCSRLTTLNLSYAT-VQS----YDLVKLLCQCPKLQRLWVLDYIEDAGLE---VLASTCKDLRELRVFPSEPFVM 353 (594)
T ss_dssp GG-HHHHTTCCEEECTTCC-CCH----HHHHHHHTTCTTCCEEEEEGGGHHHHHH---HHHHHCTTCCEEEEECSCTTCS
T ss_pred HH-HHhhCCCCEEEccCCC-CCH----HHHHHHHhcCCCcCEEeCcCccCHHHHH---HHHHhCCCCCEEEEecCccccc
Confidence 11 1357899999999886 221 0011111467899999998872211110 0022478999999954
Q ss_pred --CCCCCcccchHHhccCCccceEeeccccccccccccccccccccccccccccccEEecC-----CCCCccccccCccc
Q 044755 811 --CDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLCLG-----SLPELTSFCCEVKK 883 (1079)
Q Consensus 811 --c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~-----~c~~L~~l~~~~~~ 883 (1079)
|..++..........+++|+.|.+ +|..+...... .-...+++|+.|++. +|.+++..+..
T Consensus 354 ~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~--------~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~--- 421 (594)
T 2p1m_B 354 EPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALI--------TIARNRPNMTRFRLCIIEPKAPDYLTLEPLD--- 421 (594)
T ss_dssp SCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHH--------HHHHHCTTCCEEEEEESSTTCCCTTTCCCTH---
T ss_pred ccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHH--------HHHhhCCCcceeEeecccCCCcccccCCchh---
Confidence 445544322223345899999954 55555432210 001247899999998 56666643321
Q ss_pred ccccccccccccccccccccccccccccccccccccccceeeecccceeeecCCCCcccccc-ccccceEEEEccCcccc
Q 044755 884 NREAQGMHETCSNKISSFEDKLDISSALFNEKVVLSNLEVLEMNKVNIEKIWHNQLPVAMFL-CFQNLTRLILSKCPKLK 962 (1079)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~-~l~~L~~L~i~~c~~l~ 962 (1079)
.........+++|+.|++++ ++++. ....+. .+++|+.|+|++|. ++
T Consensus 422 -------------------------~~~~~l~~~~~~L~~L~L~~-~l~~~-----~~~~l~~~~~~L~~L~L~~~~-i~ 469 (594)
T 2p1m_B 422 -------------------------IGFGAIVEHCKDLRRLSLSG-LLTDK-----VFEYIGTYAKKMEMLSVAFAG-DS 469 (594)
T ss_dssp -------------------------HHHHHHHHHCTTCCEEECCS-SCCHH-----HHHHHHHHCTTCCEEEEESCC-SS
T ss_pred -------------------------hHHHHHHhhCCCccEEeecC-cccHH-----HHHHHHHhchhccEeeccCCC-Cc
Confidence 00011134578999999976 43332 111222 37899999999985 55
Q ss_pred cccccchhhhccccceEEEecccccceeecccccccccCCcccccccCeeecccCCCccccCCCccccCCCCccEEEEec
Q 044755 963 YIFSASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGMHTSEWPALKLLKVSD 1042 (1079)
Q Consensus 963 ~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~ 1042 (1079)
+........++++|+.|++++|+. +.......... +++|+.|++++|+....-...+ ...+|.|+...+.+
T Consensus 470 ~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~-------l~~L~~L~l~~~~~~~~~~~~l-~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 470 DLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASK-------LETMRSLWMSSCSVSFGACKLL-GQKMPKLNVEVIDE 540 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGG-------GGGSSEEEEESSCCBHHHHHHH-HHHCTTEEEEEECS
T ss_pred HHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHh-------CCCCCEEeeeCCCCCHHHHHHH-HHhCCCCEEEEecC
Confidence 443333446789999999999974 33221222222 7899999999998521111111 12456676555543
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=1.1e-17 Score=183.97 Aligned_cols=151 Identities=15% Similarity=0.224 Sum_probs=108.8
Q ss_pred CcccEEEecCCCCcc--cccCCcchhccCCcceEEEecC-cccc-ccCccccccccccEEeccccccCC--cccccCCcc
Q 044755 527 LRLEFLHINPKDSFF--EINNPCNFFTGMRKLRVVDFTR-MQLL-LLPSSIDLLVNLQTLCLVECMLDD--IAIIGKLKN 600 (1079)
Q Consensus 527 ~~Lr~L~l~~~~~~~--~~~~~~~~~~~l~~Lr~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~ 600 (1079)
.+++.|++.++.... .+ |. .+.++++|++|++++ |.+. .+|..++.+++|++|+|++|.+.. |..++++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~--~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPI--PS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEEC--CG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCccc--Ch-hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 468888888876554 34 43 457888888888884 6666 578888888888888888888764 677888888
Q ss_pred cceeeccCCcCc-ccChhhccCCcccEEccccccccc-ccChhhhhccc-ccceeecccccccccCCCCCchhhhcchhh
Q 044755 601 LEILSFWGSVIV-MLPEELGHLTKLRQLDLSNCFKLK-VIAPNVISRLV-RLEELYMSNCFVEWDDEGPNSERINARLDE 677 (1079)
Q Consensus 601 L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~-~~~~~~l~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 677 (1079)
|++|++++|.+. .+|..+..+++|++|++++| .+. .+|.. ++++. +|++|++++|.+. +..+..
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~N~l~-----------~~~~~~ 193 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISRNRLT-----------GKIPPT 193 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCSSEEE-----------EECCGG
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcCCeee-----------ccCChH
Confidence 888888888777 67888888888888888887 455 45544 77777 8888888877653 223344
Q ss_pred hccCCCCcEEEEEeeCC
Q 044755 678 LMHLPRLTTLEVHVKND 694 (1079)
Q Consensus 678 l~~l~~L~~L~l~~~~~ 694 (1079)
+..++ |+.|+++.+.+
T Consensus 194 ~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 194 FANLN-LAFVDLSRNML 209 (313)
T ss_dssp GGGCC-CSEEECCSSEE
T ss_pred HhCCc-ccEEECcCCcc
Confidence 44454 66666655443
No 57
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.73 E-value=7.4e-17 Score=179.49 Aligned_cols=289 Identities=15% Similarity=0.141 Sum_probs=202.3
Q ss_pred cceeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccccc-CccccccccccEEe
Q 044755 505 KECYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLL-PSSIDLLVNLQTLC 583 (1079)
Q Consensus 505 ~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~ 583 (1079)
...+.+.+.++.+..+|... .++++.|++.++... .+ +...|.++++|++|++++|.+..+ |..++.+++|++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS-EL--RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-EE--CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCC-cc--CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 35677888888888887655 378999999887643 34 555678999999999999999876 77789999999999
Q ss_pred ccccccCC-cccccCCcccceeeccCCcCcccChh-hccCCcccEEcccccccccc--cChhhhhcccccceeecccccc
Q 044755 584 LVECMLDD-IAIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKV--IAPNVISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 584 L~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~--~~~~~l~~L~~L~~L~l~~~~~ 659 (1079)
+++|.+.. |..+. .+|++|++++|.+..+|.. +.++++|++|++++| .++. ..+..+..+ +|++|++++|.+
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCCC
Confidence 99999887 55555 7999999999999888764 788999999999987 5542 445556777 899999998876
Q ss_pred cccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeecccccccccccccc
Q 044755 660 EWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLD 739 (1079)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~ 739 (1079)
.. .+..+ .++|+.|+++++.+..++... +..+++|+.|+++++.........+
T Consensus 185 ~~------------l~~~~--~~~L~~L~l~~n~i~~~~~~~------------l~~l~~L~~L~L~~N~l~~~~~~~~- 237 (332)
T 2ft3_A 185 TG------------IPKDL--PETLNELHLDHNKIQAIELED------------LLRYSKLYRLGLGHNQIRMIENGSL- 237 (332)
T ss_dssp SS------------CCSSS--CSSCSCCBCCSSCCCCCCTTS------------STTCTTCSCCBCCSSCCCCCCTTGG-
T ss_pred Cc------------cCccc--cCCCCEEECCCCcCCccCHHH------------hcCCCCCCEEECCCCcCCcCChhHh-
Confidence 51 11112 257888888888776665321 2346678888888765432221122
Q ss_pred ccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCc----CCCCCcceEEeecCCCCC
Q 044755 740 REGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSV----QSFNELKTIRVELCDQLS 815 (1079)
Q Consensus 740 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~----~~~~~L~~L~l~~c~~l~ 815 (1079)
..+++|+.|+++++.- ..+ ......+++|+.|+++++ .+..+....+.. ..++.|+.|++.+++-..
T Consensus 238 -~~l~~L~~L~L~~N~l-~~l------p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 238 -SFLPTLRELHLDNNKL-SRV------PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp -GGCTTCCEEECCSSCC-CBC------CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred -hCCCCCCEEECCCCcC-eec------ChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccc
Confidence 5678999999988742 222 111256789999999885 455553332221 226789999999976432
Q ss_pred -cccchHHhccCCccceEeecccc
Q 044755 816 -NIFLLSAAKCLPRLERIAVINCR 838 (1079)
Q Consensus 816 -~l~~~~~~~~l~~L~~L~i~~c~ 838 (1079)
.+++ ..+..+++|+.+.++++.
T Consensus 309 ~~~~~-~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 309 WEVQP-ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGSCG-GGGTTBCCSTTEEC----
T ss_pred cccCc-ccccccchhhhhhccccc
Confidence 3333 456778999999988764
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=1.4e-16 Score=189.70 Aligned_cols=92 Identities=18% Similarity=0.207 Sum_probs=47.7
Q ss_pred cceEEEecCccccccCccccccccccEEeccccccCCcccccCCcccceeeccCCcCcccChhhccCCcccEEccccccc
Q 044755 555 KLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFK 634 (1079)
Q Consensus 555 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 634 (1079)
++++|+++++.++.+|..+. ++|++|+|++|.++..+. .+++|++|++++|.++.+|. .+++|++|++++| .
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN-P 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC-C
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC-c
Confidence 35555555555555555443 455555555555554211 34555555555555555554 4455555555554 4
Q ss_pred ccccChhhhhcccccceeeccccc
Q 044755 635 LKVIAPNVISRLVRLEELYMSNCF 658 (1079)
Q Consensus 635 l~~~~~~~l~~L~~L~~L~l~~~~ 658 (1079)
++.+|. .+++|++|++++|.
T Consensus 113 l~~l~~----~l~~L~~L~L~~N~ 132 (622)
T 3g06_A 113 LTHLPA----LPSGLCKLWIFGNQ 132 (622)
T ss_dssp CCCCCC----CCTTCCEEECCSSC
T ss_pred CCCCCC----CCCCcCEEECCCCC
Confidence 444443 34455555555443
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=184.24 Aligned_cols=175 Identities=22% Similarity=0.239 Sum_probs=133.0
Q ss_pred EEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccccc-CccccccccccEEeccccc
Q 044755 510 ISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVECM 588 (1079)
Q Consensus 510 l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~ 588 (1079)
....++.+..+|.... ++|+.|++.++... .+ +...|.++++|++|++++|.++.+ |..++.+++|++|++++|.
T Consensus 36 c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~-~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT-EAVKSLDLSNNRIT-YI--SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EECCSTTCSSCCTTCC-TTCCEEECTTSCCC-EE--CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eeCCCCCccccccccc-ccCcEEECCCCcCc-cc--CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 5566677777776443 57888888887543 34 555678888899999998888876 4568888899999999888
Q ss_pred cCC-c-ccccCCcccceeeccCCcCcccCh--hhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCC
Q 044755 589 LDD-I-AIIGKLKNLEILSFWGSVIVMLPE--ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDE 664 (1079)
Q Consensus 589 l~~-~-~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 664 (1079)
++. + ..++++++|++|++++|.+..+|. .+.++++|++|++++|..+..+++..++++++|++|++++|.+.
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~---- 187 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ---- 187 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC----
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC----
Confidence 887 4 347888899999998888888876 57888899999988876677777766888888888888887654
Q ss_pred CCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCc
Q 044755 665 GPNSERINARLDELMHLPRLTTLEVHVKNDNVLPE 699 (1079)
Q Consensus 665 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 699 (1079)
...+..+..+++|+.|+++.+....++.
T Consensus 188 -------~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 215 (353)
T 2z80_A 188 -------SYEPKSLKSIQNVSHLILHMKQHILLLE 215 (353)
T ss_dssp -------EECTTTTTTCSEEEEEEEECSCSTTHHH
T ss_pred -------ccCHHHHhccccCCeecCCCCccccchh
Confidence 2234566777788888888776655443
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=1.1e-16 Score=175.92 Aligned_cols=174 Identities=21% Similarity=0.180 Sum_probs=124.6
Q ss_pred EEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccccc---CccccccccccEEecc
Q 044755 509 AISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLL---PSSIDLLVNLQTLCLV 585 (1079)
Q Consensus 509 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~ 585 (1079)
.+...++.+..+|.... ++|+.|.+.++... .+ |..+|.++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 11 ~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~-~i--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP-SSATRLELESNKLQ-SL--PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCSSCCSCCC-TTCCEEECCSSCCC-CC--CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcccCCCCCC-CCCCEEECCCCccC-cc--CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45666666667766443 67888888876543 45 666778888888888888887754 5666778888888888
Q ss_pred ccccCC-cccccCCcccceeeccCCcCcccCh--hhccCCcccEEcccccccccccChhhhhcccccceeeccccccccc
Q 044755 586 ECMLDD-IAIIGKLKNLEILSFWGSVIVMLPE--ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWD 662 (1079)
Q Consensus 586 ~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~ 662 (1079)
+|.+.. +..+..+++|++|++++|.+..+|. .+..+++|++|++++| .+...++..++.+++|++|++++|.+.
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-- 163 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQ-- 163 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEG--
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccc--
Confidence 888777 6678888888888888888877764 5778888888888887 566666666778888888888877653
Q ss_pred CCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCC
Q 044755 663 DEGPNSERINARLDELMHLPRLTTLEVHVKNDNVL 697 (1079)
Q Consensus 663 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 697 (1079)
....+..+..+++|+.|+++.+.+..+
T Consensus 164 --------~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 164 --------ENFLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp --------GGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred --------cccchhHHhhCcCCCEEECCCCCcCCc
Confidence 012334455666777777666554433
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=2.5e-16 Score=183.18 Aligned_cols=173 Identities=21% Similarity=0.299 Sum_probs=127.7
Q ss_pred eEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccC-ccccccccccEEeccc
Q 044755 508 YAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLP-SSIDLLVNLQTLCLVE 586 (1079)
Q Consensus 508 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~ 586 (1079)
+.+...+..+..+|..+. ++++.|++.++... .+ +...|.++++|++|+|++|.+..++ ..+..+++|++|+|++
T Consensus 57 ~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~-~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQ-MI--QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSSCCSSCCSCCC-TTCSEEECCSSCCC-EE--CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECCCCcCccCCCCC-CCccEEECcCCcCc-eE--CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 455666666666775443 67888888877543 33 4555688888888888888888764 5688888888888888
Q ss_pred cccCC-c-ccccCCcccceeeccCCcCcccCh-hhccCCcccEEcccccccccccChhhhhcccccceeecccccccccC
Q 044755 587 CMLDD-I-AIIGKLKNLEILSFWGSVIVMLPE-ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDD 663 (1079)
Q Consensus 587 ~~l~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 663 (1079)
|.++. + ..++.+++|++|++++|.+..+|. .+.++++|++|++++|..+..+++..+.++++|++|++++|.+.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 209 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--- 209 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS---
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc---
Confidence 88877 3 457888888888888888888765 47788888888888877888888777888888888888887654
Q ss_pred CCCCchhhhcchhhhccCCCCcEEEEEeeCCCCC
Q 044755 664 EGPNSERINARLDELMHLPRLTTLEVHVKNDNVL 697 (1079)
Q Consensus 664 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 697 (1079)
.+..+..+++|+.|++++|.+..+
T Consensus 210 ----------~~~~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 210 ----------DMPNLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp ----------SCCCCTTCTTCCEEECTTSCCSEE
T ss_pred ----------ccccccccccccEEECcCCcCccc
Confidence 112355666777777766655444
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=2.5e-16 Score=182.53 Aligned_cols=173 Identities=21% Similarity=0.337 Sum_probs=125.4
Q ss_pred eEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccC-ccccccccccEEeccc
Q 044755 508 YAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLP-SSIDLLVNLQTLCLVE 586 (1079)
Q Consensus 508 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~ 586 (1079)
+.+...+..+..+|..+. ++++.|++.++... .+ +...|.++++|++|+|++|.+..++ ..+..+++|++|+|++
T Consensus 46 ~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~-~~--~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS-TNTRLLNLHENQIQ-II--KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp CEEECCSCCCSSCCSCCC-TTCSEEECCSCCCC-EE--CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCC-ee--CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456666666777776543 67888888876543 33 4455678888888888888888764 5678888888888888
Q ss_pred cccCC-c-ccccCCcccceeeccCCcCcccCh-hhccCCcccEEcccccccccccChhhhhcccccceeecccccccccC
Q 044755 587 CMLDD-I-AIIGKLKNLEILSFWGSVIVMLPE-ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDD 663 (1079)
Q Consensus 587 ~~l~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 663 (1079)
|.++. + ..+..+.+|++|++++|.+..+|. .+.++++|++|++++|..+..+++..+.++++|++|++++|.+.
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 198 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--- 198 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS---
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc---
Confidence 88877 3 467888888888888888887765 47788888888888877778787777888888888888877654
Q ss_pred CCCCchhhhcchhhhccCCCCcEEEEEeeCCCCC
Q 044755 664 EGPNSERINARLDELMHLPRLTTLEVHVKNDNVL 697 (1079)
Q Consensus 664 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 697 (1079)
.+..+..+++|+.|++++|.+..+
T Consensus 199 ----------~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 199 ----------EIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp ----------SCCCCTTCSSCCEEECTTSCCCEE
T ss_pred ----------cccccCCCcccCEEECCCCccCcc
Confidence 112355666677777666555443
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=9.5e-16 Score=182.50 Aligned_cols=256 Identities=20% Similarity=0.165 Sum_probs=181.6
Q ss_pred ceeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEecc
Q 044755 506 ECYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLV 585 (1079)
Q Consensus 506 ~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 585 (1079)
.++.+.+.++.+..+|..+. ++|+.|.+.++... .+ |. .+++|++|+|++|.++.+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-~l--p~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SL--PA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-CC--CC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-CC--CC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 46788888898888887665 89999999987543 44 43 57889999999999999887 67899999999
Q ss_pred ccccCCcccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCC
Q 044755 586 ECMLDDIAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEG 665 (1079)
Q Consensus 586 ~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 665 (1079)
+|.++..+. .+.+|++|++++|.+..+|.. +++|++|++++| .+..+|. .+.+|+.|++++|.+.
T Consensus 110 ~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~----- 174 (622)
T 3g06_A 110 SNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLT----- 174 (622)
T ss_dssp SCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCS-----
T ss_pred CCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCC-----
Confidence 999888332 678899999999999988864 488999999998 6777764 3567888898888764
Q ss_pred CCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccccccccCC
Q 044755 666 PNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSR 745 (1079)
Q Consensus 666 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 745 (1079)
... ..+++|+.|+++.|.+..+|.. +++|+.|.+.++... . ++ ..+++
T Consensus 175 -------~l~---~~~~~L~~L~Ls~N~l~~l~~~----------------~~~L~~L~L~~N~l~-~----l~-~~~~~ 222 (622)
T 3g06_A 175 -------SLP---MLPSGLQELSVSDNQLASLPTL----------------PSELYKLWAYNNRLT-S----LP-ALPSG 222 (622)
T ss_dssp -------CCC---CCCTTCCEEECCSSCCSCCCCC----------------CTTCCEEECCSSCCS-S----CC-CCCTT
T ss_pred -------CCc---ccCCCCcEEECCCCCCCCCCCc----------------cchhhEEECcCCccc-c----cC-CCCCC
Confidence 111 3457888888888877766542 346666777665422 1 11 23467
Q ss_pred CceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHhcc
Q 044755 746 LKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKC 825 (1079)
Q Consensus 746 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 825 (1079)
|+.|+++++. +..+ + ..+++|+.|+++++ .+..++. .+++|+.|++++| .++.+|. .+..
T Consensus 223 L~~L~Ls~N~-L~~l-------p--~~l~~L~~L~Ls~N-~L~~lp~------~~~~L~~L~Ls~N-~L~~lp~--~l~~ 282 (622)
T 3g06_A 223 LKELIVSGNR-LTSL-------P--VLPSELKELMVSGN-RLTSLPM------LPSGLLSLSVYRN-QLTRLPE--SLIH 282 (622)
T ss_dssp CCEEECCSSC-CSCC-------C--CCCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCCSCCG--GGGG
T ss_pred CCEEEccCCc-cCcC-------C--CCCCcCcEEECCCC-CCCcCCc------ccccCcEEeCCCC-CCCcCCH--HHhh
Confidence 8888887763 1111 1 35577778877775 4444421 5677778887774 5666653 3556
Q ss_pred CCccceEeeccccc
Q 044755 826 LPRLERIAVINCRN 839 (1079)
Q Consensus 826 l~~L~~L~i~~c~~ 839 (1079)
+++|+.|++++++-
T Consensus 283 l~~L~~L~L~~N~l 296 (622)
T 3g06_A 283 LSSETTVNLEGNPL 296 (622)
T ss_dssp SCTTCEEECCSCCC
T ss_pred ccccCEEEecCCCC
Confidence 77777777777653
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=4.9e-18 Score=198.89 Aligned_cols=398 Identities=18% Similarity=0.103 Sum_probs=225.4
Q ss_pred CcceEEEecCccccccC--ccccccccccEEeccccccCC------cccccCCcccceeeccCCcCccc-Chhh-ccCC-
Q 044755 554 RKLRVVDFTRMQLLLLP--SSIDLLVNLQTLCLVECMLDD------IAIIGKLKNLEILSFWGSVIVML-PEEL-GHLT- 622 (1079)
Q Consensus 554 ~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~~------~~~i~~L~~L~~L~l~~~~l~~l-p~~i-~~L~- 622 (1079)
+.|++||++++.+...+ ..+..+++|++|++++|.+.. +..+..+++|++|++++|.+... +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56899999999887543 236789999999999998873 35677889999999999877652 2233 3344
Q ss_pred ---cccEEccccccccccc----ChhhhhcccccceeecccccccccCCCCCchhhhcchhh-hccCCCCcEEEEEeeCC
Q 044755 623 ---KLRQLDLSNCFKLKVI----APNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDE-LMHLPRLTTLEVHVKND 694 (1079)
Q Consensus 623 ---~L~~L~l~~~~~l~~~----~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~ 694 (1079)
+|++|++++| .+... .+..+.++++|++|++++|.+. .......... ....++|+.|+++.+.+
T Consensus 83 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~-------~~~~~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 83 PSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLG-------DAGLQLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp TTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCH-------HHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred CCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCcCc-------hHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence 6999999987 55532 1444778889999998887653 0001111112 12345677777766544
Q ss_pred CCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccccccccCCCceeeccCCCCcceecccCCcCC-CCCCC
Q 044755 695 NVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVP-LDDAF 773 (1079)
Q Consensus 695 ~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~ 773 (1079)
........... + ..+++|+.|+++++.-..... ..... .....
T Consensus 155 ~~~~~~~l~~~--------l--------------------------~~~~~L~~L~L~~n~i~~~~~--~~l~~~l~~~~ 198 (461)
T 1z7x_W 155 SAASCEPLASV--------L--------------------------RAKPDFKELTVSNNDINEAGV--RVLCQGLKDSP 198 (461)
T ss_dssp BGGGHHHHHHH--------H--------------------------HHCTTCCEEECCSSBCHHHHH--HHHHHHHHHSC
T ss_pred CHHHHHHHHHH--------H--------------------------hhCCCCCEEECcCCCcchHHH--HHHHHHHhcCC
Confidence 32211000000 1 123444455444442100000 00000 00123
Q ss_pred Cccceeecccccccccccc--CcCCcCCCCCcceEEeecCCCCCcccch----HHhccCCccceEeeccccccccccccc
Q 044755 774 PILESLNLYNLIKLERICQ--DRLSVQSFNELKTIRVELCDQLSNIFLL----SAAKCLPRLERIAVINCRNIQEIFVVD 847 (1079)
Q Consensus 774 ~~L~~L~l~~~~~l~~i~~--~~~~~~~~~~L~~L~l~~c~~l~~l~~~----~~~~~l~~L~~L~i~~c~~l~~l~~~~ 847 (1079)
++|+.|++++|. +..... .......+++|++|++++| .+...... .....+++|++|++++|. +.....
T Consensus 199 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~-- 273 (461)
T 1z7x_W 199 CQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGC-- 273 (461)
T ss_dssp CCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHH--
T ss_pred CCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHH--
Confidence 456666666552 221100 0001235789999999997 44442110 122347899999999984 333110
Q ss_pred cccccccccccccccccEEecCCCCCccccccCcccccccccccccccccccccccccccccccccc-cccccccceeee
Q 044755 848 GEYDAIDHQKIEFSQLRTLCLGSLPELTSFCCEVKKNREAQGMHETCSNKISSFEDKLDISSALFNE-KVVLSNLEVLEM 926 (1079)
Q Consensus 848 ~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~l 926 (1079)
...+.....+++|++|+++++. +...... ..... ....++|+.|++
T Consensus 274 ---~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~-----------------------------~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 274 ---GDLCRVLRAKESLKELSLAGNE-LGDEGAR-----------------------------LLCETLLEPGCQLESLWV 320 (461)
T ss_dssp ---HHHHHHHHHCTTCCEEECTTCC-CHHHHHH-----------------------------HHHHHHTSTTCCCCEEEC
T ss_pred ---HHHHHHHhhCCCcceEECCCCC-CchHHHH-----------------------------HHHHHhccCCccceeeEc
Confidence 0011223347899999999874 3321100 00000 012369999999
Q ss_pred cccceeeecCCCCccccccccccceEEEEccCcccccccccchhhh----ccccceEEEeccccccee---ecccccccc
Q 044755 927 NKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLGS----FEHLQHLEICHCKGLQEI---ISKEGADDQ 999 (1079)
Q Consensus 927 ~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~~----l~~L~~L~i~~c~~l~~i---~~~~~~~~~ 999 (1079)
++|.++......+ ...+..+++|++|++++| .+++......... .++|+.|++++|. ++.. ..+..+..
T Consensus 321 ~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~- 396 (461)
T 1z7x_W 321 KSCSFTAACCSHF-SSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLA- 396 (461)
T ss_dssp TTSCCBGGGHHHH-HHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHH-
T ss_pred CCCCCchHHHHHH-HHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHh-
Confidence 9998775311111 124556799999999999 6665432222222 5699999999994 5421 01223322
Q ss_pred cCCcccccccCeeecccCCCcccc-----CCCccccCCCCccEEEEecCCC
Q 044755 1000 VLPNFVFPQVTSLRLSGLPELKCL-----YPGMHTSEWPALKLLKVSDCDQ 1045 (1079)
Q Consensus 1000 ~~~~~~l~~L~~L~l~~c~~L~~l-----~~~~~~~~l~sL~~L~i~~C~~ 1045 (1079)
+++|++|++++|+ ++.. ...+. ...++|+.|.+.++..
T Consensus 397 ------~~~L~~L~l~~N~-i~~~~~~~l~~~l~-~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 397 ------NHSLRELDLSNNC-LGDAGILQLVESVR-QPGCLLEQLVLYDIYW 439 (461)
T ss_dssp ------CCCCCEEECCSSS-CCHHHHHHHHHHHT-STTCCCCEEECTTCCC
T ss_pred ------CCCccEEECCCCC-CCHHHHHHHHHHhc-cCCcchhheeeccccc
Confidence 7999999999975 3332 11111 1345789998877653
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=1.2e-15 Score=165.79 Aligned_cols=174 Identities=18% Similarity=0.200 Sum_probs=118.9
Q ss_pred eEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccccc-CccccccccccEEeccc
Q 044755 508 YAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVE 586 (1079)
Q Consensus 508 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~ 586 (1079)
+.+...++.+..+|... .++|+.|.+.++... .+ +...|..+++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS-HV--PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC-EE--CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC-cc--CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 44555566666666533 457778887776543 33 455567788888888888877766 66677888888888888
Q ss_pred cc-cCC--cccccCCcccceeeccCCcCccc-ChhhccCCcccEEcccccccccccChhhhhcccccceeeccccccccc
Q 044755 587 CM-LDD--IAIIGKLKNLEILSFWGSVIVML-PEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWD 662 (1079)
Q Consensus 587 ~~-l~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~ 662 (1079)
|. +.. +..+..+++|++|++++|.+..+ |..+.++++|++|++++| .+..+++..++++++|++|++++|.+.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-- 166 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRIS-- 166 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC--
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCccc--
Confidence 86 665 46677788888888888877766 445777888888888876 677777666777888888888777553
Q ss_pred CCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCC
Q 044755 663 DEGPNSERINARLDELMHLPRLTTLEVHVKNDNVL 697 (1079)
Q Consensus 663 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 697 (1079)
......+..+++|+.|+++++.+..+
T Consensus 167 ---------~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 167 ---------SVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp ---------EECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ---------ccCHHHhcCccccCEEECCCCccccc
Confidence 11222355666777777766654433
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.65 E-value=1.6e-15 Score=170.31 Aligned_cols=262 Identities=16% Similarity=0.141 Sum_probs=190.8
Q ss_pred CCcCCCCccccccceeEEEecCCCCCCCCC--ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccC
Q 044755 493 EDVWEWPDDIALKECYAISLRGCSIHELPE--GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLP 570 (1079)
Q Consensus 493 ~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp 570 (1079)
......|. .....++++.+.++.+..++. ...+++|++|++.++... .+ +...|.++++|++|++++|.++.+|
T Consensus 41 ~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~--~~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 41 GSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TI--EEDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp TTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EE--CTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred CCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-cc--CHhhcCCCCCCCEEECCCCcCCcCC
Confidence 33444443 234689999999999988876 447999999999987543 34 5566789999999999999999998
Q ss_pred cc-ccccccccEEeccccccCC-cc--cccCCcccceeeccCC-cCccc-ChhhccCCcccEEcccccccccccChhhhh
Q 044755 571 SS-IDLLVNLQTLCLVECMLDD-IA--IIGKLKNLEILSFWGS-VIVML-PEELGHLTKLRQLDLSNCFKLKVIAPNVIS 644 (1079)
Q Consensus 571 ~~-i~~L~~L~~L~L~~~~l~~-~~--~i~~L~~L~~L~l~~~-~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~ 644 (1079)
.. ++.+++|++|++++|.++. +. .++++++|++|++++| .+..+ |..+..+++|++|++++| .+...++..++
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~ 195 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLK 195 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTT
T ss_pred HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHh
Confidence 77 8999999999999999988 44 6899999999999998 57777 456899999999999998 67777666799
Q ss_pred cccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEe
Q 044755 645 RLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLC 724 (1079)
Q Consensus 645 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~ 724 (1079)
++++|++|++++|.+. ......+..+++|+.|+++++....++..... .......++.+.
T Consensus 196 ~l~~L~~L~l~~n~l~-----------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~---------~~~~~~~l~~l~ 255 (353)
T 2z80_A 196 SIQNVSHLILHMKQHI-----------LLLEIFVDVTSSVECLELRDTDLDTFHFSELS---------TGETNSLIKKFT 255 (353)
T ss_dssp TCSEEEEEEEECSCST-----------THHHHHHHHTTTEEEEEEESCBCTTCCCC---------------CCCCCCEEE
T ss_pred ccccCCeecCCCCccc-----------cchhhhhhhcccccEEECCCCccccccccccc---------cccccchhhccc
Confidence 9999999999988653 11122345688999999999887765432110 011234455556
Q ss_pred ecccccccccccccc--ccccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccc
Q 044755 725 LDKSQDVKNVLFDLD--REGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLI 785 (1079)
Q Consensus 725 L~~~~~~~~~~~~l~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 785 (1079)
+.++.........++ ...+++|+.|+++++.- ..+.. . ....+++|+.|++.+++
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l-~~i~~--~---~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQL-KSVPD--G---IFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC-CCCCT--T---TTTTCTTCCEEECCSSC
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCCC-CccCH--H---HHhcCCCCCEEEeeCCC
Confidence 655443222111111 14678999999998842 22211 0 11568899999998874
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.64 E-value=2.7e-15 Score=174.49 Aligned_cols=239 Identities=19% Similarity=0.215 Sum_probs=158.6
Q ss_pred cEEEecCCCCcccccCCcchhccCCcceEEEecCcccccc-CccccccccccEEeccccccCC--cccccCCcccceeec
Q 044755 530 EFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSF 606 (1079)
Q Consensus 530 r~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l 606 (1079)
+.+...+.. ...+ |..+ .++|++|+|++|.+..+ |..+..+++|++|+|++|.++. +..+.++.+|++|++
T Consensus 57 ~~v~c~~~~-l~~i--P~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 57 SKVVCTRRG-LSEV--PQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp CEEECCSSC-CSSC--CSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cEEEECCCC-cCcc--CCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 445544432 2344 5544 26889999999999987 6679999999999999999887 578999999999999
Q ss_pred cCCcCcccChh-hccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCc
Q 044755 607 WGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLT 685 (1079)
Q Consensus 607 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 685 (1079)
++|.+..+|.. +..+++|++|++++| .+..+++..+.++++|++|++++|... .......+..+++|+
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l----------~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKL----------EYISEGAFEGLFNLK 199 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTC----------CEECTTTTTTCTTCC
T ss_pred CCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCc----------cccChhhccCCCCCC
Confidence 99999998765 788999999999998 788898888999999999999875432 011223467788899
Q ss_pred EEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccccccccCCCceeeccCCCCcceecccCC
Q 044755 686 TLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKE 765 (1079)
Q Consensus 686 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~ 765 (1079)
.|+++.+.+..+|. +..+++|+.|+++++.........+ ..+++|+.|++.++.-. .+..
T Consensus 200 ~L~L~~n~l~~~~~--------------~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~-~~~~--- 259 (452)
T 3zyi_A 200 YLNLGMCNIKDMPN--------------LTPLVGLEELEMSGNHFPEIRPGSF--HGLSSLKKLWVMNSQVS-LIER--- 259 (452)
T ss_dssp EEECTTSCCSSCCC--------------CTTCTTCCEEECTTSCCSEECGGGG--TTCTTCCEEECTTSCCC-EECT---
T ss_pred EEECCCCccccccc--------------ccccccccEEECcCCcCcccCcccc--cCccCCCEEEeCCCcCc-eECH---
Confidence 99888877766653 2235566677776654332211112 34566666666665321 1100
Q ss_pred cCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeec
Q 044755 766 RVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEL 810 (1079)
Q Consensus 766 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~ 810 (1079)
.....+++|+.|+++++ .+..+... ....+++|+.|++++
T Consensus 260 --~~~~~l~~L~~L~L~~N-~l~~~~~~--~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 260 --NAFDGLASLVELNLAHN-NLSSLPHD--LFTPLRYLVELHLHH 299 (452)
T ss_dssp --TTTTTCTTCCEEECCSS-CCSCCCTT--SSTTCTTCCEEECCS
T ss_pred --HHhcCCCCCCEEECCCC-cCCccChH--HhccccCCCEEEccC
Confidence 01134555666666554 33333211 123345555555555
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.64 E-value=2e-15 Score=165.88 Aligned_cols=195 Identities=18% Similarity=0.200 Sum_probs=153.0
Q ss_pred ccCCcCCCCccccccceeEEEecCCCCCCCCCc--cCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccc
Q 044755 491 RNEDVWEWPDDIALKECYAISLRGCSIHELPEG--LECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLL 568 (1079)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~ 568 (1079)
.+......+. .....++++.+.++.+..++.. ..+++|+.|++.++.....- .....+..+++|++|++++|.+..
T Consensus 15 ~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~L~~L~Ls~n~i~~ 92 (306)
T 2z66_A 15 NSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG-CCSQSDFGTTSLKYLDLSFNGVIT 92 (306)
T ss_dssp CSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE-EEEHHHHSCSCCCEEECCSCSEEE
T ss_pred CCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc-CcccccccccccCEEECCCCcccc
Confidence 3333444443 3356899999999999988874 47999999999987643210 012334579999999999999999
Q ss_pred cCccccccccccEEeccccccCC-c--ccccCCcccceeeccCCcCccc-ChhhccCCcccEEcccccccccc-cChhhh
Q 044755 569 LPSSIDLLVNLQTLCLVECMLDD-I--AIIGKLKNLEILSFWGSVIVML-PEELGHLTKLRQLDLSNCFKLKV-IAPNVI 643 (1079)
Q Consensus 569 lp~~i~~L~~L~~L~L~~~~l~~-~--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~-~~~~~l 643 (1079)
+|..+..+++|++|++++|.+.. + ..+.++++|++|++++|.+... |..+..+++|++|++++| .+.. ..+..+
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 171 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIF 171 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCC
T ss_pred ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccchhHH
Confidence 99999999999999999999877 3 5789999999999999988765 556889999999999998 5554 334458
Q ss_pred hcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCc
Q 044755 644 SRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPE 699 (1079)
Q Consensus 644 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 699 (1079)
+.+++|++|++++|.+. ...+..+..+++|+.|+++++.+..++.
T Consensus 172 ~~l~~L~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 216 (306)
T 2z66_A 172 TELRNLTFLDLSQCQLE-----------QLSPTAFNSLSSLQVLNMSHNNFFSLDT 216 (306)
T ss_dssp TTCTTCCEEECTTSCCC-----------EECTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred hhCcCCCEEECCCCCcC-----------CcCHHHhcCCCCCCEEECCCCccCccCh
Confidence 99999999999998765 2234567788899999998877665543
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.63 E-value=4e-15 Score=161.53 Aligned_cols=195 Identities=23% Similarity=0.312 Sum_probs=160.7
Q ss_pred eccCCcCCCCccccccceeEEEecCCCCCCCCC--ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcc-c
Q 044755 490 VRNEDVWEWPDDIALKECYAISLRGCSIHELPE--GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQ-L 566 (1079)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i 566 (1079)
..+......+. ..+..++++.+.++.+..++. ...+++|+.|.+.++... .+ +...|.++++|++|++++|. +
T Consensus 18 c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~--~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 18 CPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RI--DAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EE--CTTTTTTCTTCCEEECCSCTTC
T ss_pred cCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-ee--CHhhcCCccCCCEEeCCCCCCc
Confidence 33333444443 346789999999999988774 347899999999987543 33 45567899999999999997 8
Q ss_pred ccc-CccccccccccEEeccccccCC--cccccCCcccceeeccCCcCcccChh-hccCCcccEEcccccccccccChhh
Q 044755 567 LLL-PSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIAPNV 642 (1079)
Q Consensus 567 ~~l-p~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~ 642 (1079)
..+ |..+..+++|++|++++|.+.. +..++++++|++|++++|.+..+|.. ++.+++|++|++++| .++.+++..
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~ 172 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERA 172 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTT
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHH
Confidence 887 6789999999999999999887 57789999999999999999998765 889999999999998 788898877
Q ss_pred hhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCch
Q 044755 643 ISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEG 700 (1079)
Q Consensus 643 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 700 (1079)
+..+++|++|++++|.+. ...+..+..+++|+.|+++++.+..++..
T Consensus 173 ~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVA-----------HVHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp TTTCTTCCEEECCSSCCC-----------EECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred hcCccccCEEECCCCccc-----------ccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 899999999999998765 22356677889999999998887766643
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.63 E-value=3.5e-15 Score=172.89 Aligned_cols=234 Identities=19% Similarity=0.265 Sum_probs=176.4
Q ss_pred eccCCcCCCCccccccceeEEEecCCCCCCCCC--ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccc
Q 044755 490 VRNEDVWEWPDDIALKECYAISLRGCSIHELPE--GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLL 567 (1079)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~ 567 (1079)
..+......|. .....++.+.+++|.+..++. ...+++|+.|++.++... .+ +...|.++++|++|+|++|.++
T Consensus 50 c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i--~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 50 CVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TI--EIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp CCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EE--CGGGGTTCSSCCEEECCSSCCS
T ss_pred eCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-cc--ChhhccCCccCCEEECCCCcCC
Confidence 33444444443 345788999999999988763 347999999999987643 44 5567899999999999999999
Q ss_pred ccCc-cccccccccEEeccccccCC--cccccCCcccceeeccCC-cCcccCh-hhccCCcccEEcccccccccccChhh
Q 044755 568 LLPS-SIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGS-VIVMLPE-ELGHLTKLRQLDLSNCFKLKVIAPNV 642 (1079)
Q Consensus 568 ~lp~-~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~ 642 (1079)
.+|. .+..+++|++|+|++|.+.. +..+.++++|++|++++| .+..+|. .+.++++|++|++++| .++.+|.
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~-- 202 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN-- 202 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC--
T ss_pred eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc--
Confidence 9876 58999999999999999988 357899999999999995 7777766 5889999999999998 7888874
Q ss_pred hhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccce
Q 044755 643 ISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEY 722 (1079)
Q Consensus 643 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~ 722 (1079)
+..+++|++|++++|.+. ......+..+++|+.|+++.+.+..++... +.++++|+.
T Consensus 203 ~~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------~~~l~~L~~ 259 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLS-----------AIRPGSFQGLMHLQKLWMIQSQIQVIERNA------------FDNLQSLVE 259 (440)
T ss_dssp CTTCSSCCEEECTTSCCC-----------EECTTTTTTCTTCCEEECTTCCCCEECTTS------------STTCTTCCE
T ss_pred cCCCcccCEEECCCCccC-----------ccChhhhccCccCCEEECCCCceeEEChhh------------hcCCCCCCE
Confidence 789999999999999765 233456778899999999887766554331 223566677
Q ss_pred EeeccccccccccccccccccCCCceeeccCCC
Q 044755 723 LCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNP 755 (1079)
Q Consensus 723 L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 755 (1079)
|+|+++....-....+ ..+++|+.|++.+++
T Consensus 260 L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 260 INLAHNNLTLLPHDLF--TPLHHLERIHLHHNP 290 (440)
T ss_dssp EECTTSCCCCCCTTTT--SSCTTCCEEECCSSC
T ss_pred EECCCCCCCccChhHh--ccccCCCEEEcCCCC
Confidence 7776654321111111 344666666666553
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=8e-15 Score=157.52 Aligned_cols=178 Identities=24% Similarity=0.346 Sum_probs=134.1
Q ss_pred ceeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCcc-ccccccccEEec
Q 044755 506 ECYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSS-IDLLVNLQTLCL 584 (1079)
Q Consensus 506 ~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L 584 (1079)
..+.+.+.++.+..+|..+. ++++.|++.++... .+ +...|.++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~-~~--~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS-SL--PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS-CC--CTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC-ee--CHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 34677788888877776543 67888888876543 34 555678888899999988888888766 477888999999
Q ss_pred cccccCC--cccccCCcccceeeccCCcCcccChh-hccCCcccEEcccccccccccChhhhhcccccceeecccccccc
Q 044755 585 VECMLDD--IAIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEW 661 (1079)
Q Consensus 585 ~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~ 661 (1079)
++|.+.. +..+.++.+|++|++++|.+..+|.. +..+++|++|++++| .+..+++..++.+++|++|++++|.+.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~- 170 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLK- 170 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCc-
Confidence 8888877 35668888889999988888877654 678888888888887 688888777788888888888887654
Q ss_pred cCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCc
Q 044755 662 DDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPE 699 (1079)
Q Consensus 662 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 699 (1079)
......+..+++|+.|+++.+.+..++.
T Consensus 171 ----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 171 ----------RVPEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp ----------CCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ----------EeChhHhccCCCcCEEECCCCcCCcCCH
Confidence 1122345667788888887776665554
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=6.5e-15 Score=159.50 Aligned_cols=180 Identities=22% Similarity=0.268 Sum_probs=135.2
Q ss_pred ccceeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEe
Q 044755 504 LKECYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLC 583 (1079)
Q Consensus 504 ~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~ 583 (1079)
...++.+.+.++.+..+|..+. ++++.|++.++... .+ +...|.++++|++|++++|.++.+|.. +.+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~-~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLY-TF--SLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCS-EE--EGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCC-cc--CHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 3456778888888877776553 67888888877643 33 445567888888888888888877664 7788888888
Q ss_pred ccccccCC-cccccCCcccceeeccCCcCcccCh-hhccCCcccEEcccccccccccChhhhhcccccceeecccccccc
Q 044755 584 LVECMLDD-IAIIGKLKNLEILSFWGSVIVMLPE-ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEW 661 (1079)
Q Consensus 584 L~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~ 661 (1079)
+++|.++. |..+..+++|++|++++|.+..+|. .+..+++|++|++++| .++.+|++.+..+++|+.|++++|.+.
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~- 161 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLT- 161 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCS-
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCC-
Confidence 88888877 6777888888888888888888864 5788888888888887 677888777788888888888887664
Q ss_pred cCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCch
Q 044755 662 DDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEG 700 (1079)
Q Consensus 662 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 700 (1079)
......+..+++|+.|+++.|.+..+|..
T Consensus 162 ----------~l~~~~~~~l~~L~~L~L~~N~l~~ip~~ 190 (290)
T 1p9a_G 162 ----------ELPAGLLNGLENLDTLLLQENSLYTIPKG 190 (290)
T ss_dssp ----------CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ----------ccCHHHhcCcCCCCEEECCCCcCCccChh
Confidence 11123356677888888887777766655
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.59 E-value=4e-16 Score=171.59 Aligned_cols=153 Identities=17% Similarity=0.165 Sum_probs=108.6
Q ss_pred CCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccc--cCcccc-------ccccccEEeccccccCC--ccc
Q 044755 526 CLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLL--LPSSID-------LLVNLQTLCLVECMLDD--IAI 594 (1079)
Q Consensus 526 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~--lp~~i~-------~L~~L~~L~L~~~~l~~--~~~ 594 (1079)
.++|+.|.+.++.. .+ |..+... |++|++++|.+.. +|..+. .+++|++|+|++|.++. |..
T Consensus 42 ~~~L~~l~l~~n~l--~~--p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--AD--LGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEECTTHHHHCCTT--CC--CHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred CCCceeEeeccccc--cc--HHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45667777766655 44 5554433 7888888888754 566555 68888888888888875 565
Q ss_pred c--cCCcccceeeccCCcCcccChhhccC-----CcccEEcccccccccccChhhhhcccccceeecccccccccCCCCC
Q 044755 595 I--GKLKNLEILSFWGSVIVMLPEELGHL-----TKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPN 667 (1079)
Q Consensus 595 i--~~L~~L~~L~l~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 667 (1079)
+ +.+++|++|++++|.+..+|..++.+ ++|++|++++| .+..+++..++++++|++|++++|.+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~------- 186 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPEL------- 186 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTC-------
T ss_pred HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcC-------
Confidence 5 78888888888888888778777776 88888888887 677777666888888888888887643
Q ss_pred chhhhcchhhh--ccCCCCcEEEEEeeCCC
Q 044755 668 SERINARLDEL--MHLPRLTTLEVHVKNDN 695 (1079)
Q Consensus 668 ~~~~~~~~~~l--~~l~~L~~L~l~~~~~~ 695 (1079)
.....+..+ ..+++|+.|+++++.+.
T Consensus 187 --~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 187 --GERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp --HHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred --cchHHHHHHHhccCCCCCEEECCCCcCc
Confidence 111123333 66777777777766554
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.59 E-value=8.5e-16 Score=169.39 Aligned_cols=245 Identities=14% Similarity=0.087 Sum_probs=118.1
Q ss_pred CCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccccCCcccccCCcccceee
Q 044755 526 CLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILS 605 (1079)
Q Consensus 526 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~ 605 (1079)
+++|+.|++.++... .+ +...|.++++|++|++++|.+...++ +..+++|++|++++|.++. +..+++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~-~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~---l~~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLS-QI--SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE---LLVGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCC-CC--CHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE---EEECTTCCEEE
T ss_pred CCCCCEEECcCCccC-cC--CHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc---ccCCCCcCEEE
Confidence 345555555554322 12 33334555555555555555554433 5555555555555555443 11225555555
Q ss_pred ccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhh-ccCCCC
Q 044755 606 FWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDEL-MHLPRL 684 (1079)
Q Consensus 606 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L 684 (1079)
+++|.+..+|. ..+++|++|++++| .+..+++..++.+++|++|++++|.+. ...+..+ ..+++|
T Consensus 106 l~~n~l~~~~~--~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~~l~~L 171 (317)
T 3o53_A 106 AANNNISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEID-----------TVNFAELAASSDTL 171 (317)
T ss_dssp CCSSCCSEEEE--CCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCC-----------EEEGGGGGGGTTTC
T ss_pred CCCCccCCcCc--cccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCC-----------cccHHHHhhccCcC
Confidence 55555554432 22455555555554 444444444555555555555555432 0111122 234444
Q ss_pred cEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccccccccCCCceeeccCCCCcceecccC
Q 044755 685 TTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSK 764 (1079)
Q Consensus 685 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~ 764 (1079)
+.|+++.+.+..++.. ..+++|+.|+++++.- ..+..
T Consensus 172 ~~L~L~~N~l~~~~~~----------------------------------------~~l~~L~~L~Ls~N~l-~~l~~-- 208 (317)
T 3o53_A 172 EHLNLQYNFIYDVKGQ----------------------------------------VVFAKLKTLDLSSNKL-AFMGP-- 208 (317)
T ss_dssp CEEECTTSCCCEEECC----------------------------------------CCCTTCCEEECCSSCC-CEECG--
T ss_pred CEEECCCCcCcccccc----------------------------------------cccccCCEEECCCCcC-Ccchh--
Confidence 4444443333222111 1245666666665532 11111
Q ss_pred CcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeecCCCCCcccchHHhccCCccceEeeccccccccc
Q 044755 765 ERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEI 843 (1079)
Q Consensus 765 ~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l 843 (1079)
....+++|+.|+++++ .+..++. ....+++|+.|++++++-.....+ ..+..+++|+.+.+.++..++..
T Consensus 209 ----~~~~l~~L~~L~L~~N-~l~~l~~---~~~~l~~L~~L~l~~N~~~~~~~~-~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 209 ----EFQSAAGVTWISLRNN-KLVLIEK---ALRFSQNLEHFDLRGNGFHCGTLR-DFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp ----GGGGGTTCSEEECTTS-CCCEECT---TCCCCTTCCEEECTTCCCBHHHHH-HHHHTCHHHHHHHHHHHHHHHSS
T ss_pred ----hhcccCcccEEECcCC-cccchhh---HhhcCCCCCEEEccCCCccCcCHH-HHHhccccceEEECCCchhccCC
Confidence 1134566677777664 3444422 234567788888877543212211 34556677777777766655544
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=1.2e-14 Score=159.16 Aligned_cols=146 Identities=19% Similarity=0.259 Sum_probs=75.8
Q ss_pred ccceeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEe
Q 044755 504 LKECYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLC 583 (1079)
Q Consensus 504 ~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~ 583 (1079)
...++++.+.++.+..++....+++|+.|++.++... .+ +. +..+++|++|++++|.+..+| .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~-~~--~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-DL--AP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CC--GG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC-CC--hh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 3455666666665555554444555555555554322 11 21 455555555555555555543 355555555555
Q ss_pred ccccccCCcccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccc
Q 044755 584 LVECMLDDIAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 584 L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 659 (1079)
+++|.++....++.+++|++|++++|.+..+|. +..+++|++|++++| .+..+++ +..+++|++|++++|.+
T Consensus 114 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCcc
Confidence 555555553335555555555555555555443 555555555555554 4444433 45555555555555543
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=1.2e-14 Score=156.82 Aligned_cols=141 Identities=21% Similarity=0.341 Sum_probs=91.5
Q ss_pred CCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCc-cccccccccEEeccccccCC--
Q 044755 515 CSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECMLDD-- 591 (1079)
Q Consensus 515 ~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~-- 591 (1079)
..+..+|..+. ++|+.|++.++... .+ +...|.++++|++|++++|.+..+|. .+..+++|++|++++|.+..
T Consensus 17 ~~l~~ip~~l~-~~l~~L~ls~n~l~-~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 17 LNFYKIPDNLP-FSTKNLDLSFNPLR-HL--GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp SCCSSCCSSSC-TTCCEEECTTCCCC-EE--CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCccccCCCCC-CCccEEECCCCccc-cc--CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 33444554332 45777777665432 33 44455677777777777777776644 56777777777777777766
Q ss_pred cccccCCcccceeeccCCcCcccCh-hhccCCcccEEcccccccccccC-hhhhhcccccceeeccccccc
Q 044755 592 IAIIGKLKNLEILSFWGSVIVMLPE-ELGHLTKLRQLDLSNCFKLKVIA-PNVISRLVRLEELYMSNCFVE 660 (1079)
Q Consensus 592 ~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~-~~~l~~L~~L~~L~l~~~~~~ 660 (1079)
+..+.++.+|++|++++|.+..++. .++++++|++|++++| .+..++ +..++++++|++|++++|.+.
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCC
Confidence 3567777777777777777766654 4677777777777776 455432 334677777777777776553
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=1.1e-14 Score=159.46 Aligned_cols=152 Identities=21% Similarity=0.237 Sum_probs=108.7
Q ss_pred cCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccccCCcccccCCcccce
Q 044755 524 LECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEI 603 (1079)
Q Consensus 524 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~ 603 (1079)
..+++|+.|.+.++... .+ + .+..+++|++|++++|.+..+|. +..+++|++|++++|.++.+..++++.+|++
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l--~--~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT-TI--E--GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCC-CC--T--TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCcc-Cc--h--hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCE
Confidence 35677888888776432 22 2 25677888888888888887776 7788888888888888777667788888888
Q ss_pred eeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCC
Q 044755 604 LSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPR 683 (1079)
Q Consensus 604 L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 683 (1079)
|++++|.+..+|. +..+++|++|++++| .+..+++ ++.+++|++|++++|.+. .+..+..+++
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~-------------~~~~l~~l~~ 174 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVS-------------DLTPLANLSK 174 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCC-------------CCGGGTTCTT
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCC-------------CChhhcCCCC
Confidence 8888887777764 777888888888876 6666655 677888888888777554 1122666777
Q ss_pred CcEEEEEeeCCCCCC
Q 044755 684 LTTLEVHVKNDNVLP 698 (1079)
Q Consensus 684 L~~L~l~~~~~~~~~ 698 (1079)
|+.|+++.+.+..++
T Consensus 175 L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 175 LTTLKADDNKISDIS 189 (308)
T ss_dssp CCEEECCSSCCCCCG
T ss_pred CCEEECCCCccCcCh
Confidence 777777766655443
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.57 E-value=2.2e-15 Score=166.08 Aligned_cols=212 Identities=16% Similarity=0.230 Sum_probs=160.3
Q ss_pred ccceeEEEecCCCCCCCCC--ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccE
Q 044755 504 LKECYAISLRGCSIHELPE--GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQT 581 (1079)
Q Consensus 504 ~~~~~~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~ 581 (1079)
..+++.+.+++|.+..++. ...+++|+.|++.++...... + +..+++|++|++++|.++.+|. .++|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~---~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~ 103 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D---LESLSTLRTLDLNNNYVQELLV----GPSIET 103 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E---ETTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h---hhhcCCCCEEECcCCccccccC----CCCcCE
Confidence 3578999999999988763 347999999999998654322 2 6899999999999999988764 489999
Q ss_pred EeccccccCCcccccCCcccceeeccCCcCcccCh-hhccCCcccEEcccccccccccChhhh-hcccccceeecccccc
Q 044755 582 LCLVECMLDDIAIIGKLKNLEILSFWGSVIVMLPE-ELGHLTKLRQLDLSNCFKLKVIAPNVI-SRLVRLEELYMSNCFV 659 (1079)
Q Consensus 582 L~L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l-~~L~~L~~L~l~~~~~ 659 (1079)
|++++|.+.... ...+++|++|++++|.+..++. .++.+++|++|++++| .+..+++..+ ..+++|++|++++|.+
T Consensus 104 L~l~~n~l~~~~-~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 104 LHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp EECCSSCCSEEE-ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred EECCCCccCCcC-ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcC
Confidence 999999998721 1347889999999999998855 6889999999999998 6777665545 4789999999999976
Q ss_pred cccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeecccccccccccccc
Q 044755 660 EWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLD 739 (1079)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~ 739 (1079)
. .+.....+++|+.|+++.+.+..++..+ ..+++|+.|+++++... .+...+
T Consensus 182 ~-------------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-------------~~l~~L~~L~L~~N~l~-~l~~~~- 233 (317)
T 3o53_A 182 Y-------------DVKGQVVFAKLKTLDLSSNKLAFMGPEF-------------QSAAGVTWISLRNNKLV-LIEKAL- 233 (317)
T ss_dssp C-------------EEECCCCCTTCCEEECCSSCCCEECGGG-------------GGGTTCSEEECTTSCCC-EECTTC-
T ss_pred c-------------ccccccccccCCEEECCCCcCCcchhhh-------------cccCcccEEECcCCccc-chhhHh-
Confidence 5 1123335889999999998887766542 23566777777766432 222222
Q ss_pred ccccCCCceeeccCCC
Q 044755 740 REGFSRLKHLHVQNNP 755 (1079)
Q Consensus 740 ~~~~~~L~~L~l~~~~ 755 (1079)
..+++|+.|++.+++
T Consensus 234 -~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 234 -RFSQNLEHFDLRGNG 248 (317)
T ss_dssp -CCCTTCCEEECTTCC
T ss_pred -hcCCCCCEEEccCCC
Confidence 445677777777664
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=2.9e-14 Score=153.84 Aligned_cols=181 Identities=23% Similarity=0.216 Sum_probs=144.7
Q ss_pred cccceeEEEecCCCCCCCCC--ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccC-ccccccccc
Q 044755 503 ALKECYAISLRGCSIHELPE--GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLP-SSIDLLVNL 579 (1079)
Q Consensus 503 ~~~~~~~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L 579 (1079)
.+..++++.+.++.+..++. ...+++|+.|++.++... .+ +...|.++++|++|++++|.+..++ ..+..+++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TI--EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EE--CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-cc--CHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 35679999999999988764 347899999999997543 44 5666799999999999999999875 678999999
Q ss_pred cEEeccccccCC--cccccCCcccceeeccCCcCcc--cChhhccCCcccEEcccccccccccChhhhhcccccc----e
Q 044755 580 QTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIVM--LPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLE----E 651 (1079)
Q Consensus 580 ~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~----~ 651 (1079)
++|++++|.+.. +..++++++|++|++++|.+.. +|..+.++++|++|++++| .++.+++..+..+.+|+ .
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEE
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhcccccee
Confidence 999999999887 3469999999999999998887 6889999999999999998 78888877788888877 7
Q ss_pred eecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCc
Q 044755 652 LYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPE 699 (1079)
Q Consensus 652 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 699 (1079)
|++++|.+. ..........+|+.|+++++.+..++.
T Consensus 182 L~ls~n~l~------------~~~~~~~~~~~L~~L~L~~n~l~~~~~ 217 (276)
T 2z62_A 182 LDLSLNPMN------------FIQPGAFKEIRLKELALDTNQLKSVPD 217 (276)
T ss_dssp EECCSSCCC------------EECTTSSCSCCEEEEECCSSCCSCCCT
T ss_pred eecCCCccc------------ccCccccCCCcccEEECCCCceeecCH
Confidence 777777654 111112223367777777766655554
No 80
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.56 E-value=2.2e-13 Score=152.90 Aligned_cols=290 Identities=13% Similarity=0.147 Sum_probs=173.2
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCcc------CHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTL------DIKKIQ 224 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~------~~~~~~ 224 (1079)
+.....|+||+.+++++.+++.++ +++.|+|++|+|||||++++++.. . ++|+++.... +...++
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHH
Confidence 334457999999999999998754 799999999999999999998764 1 7788876543 566677
Q ss_pred HHHHHHhCCC-----------------cc--ccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc---------cccccCC
Q 044755 225 QEIAEKLGLV-----------------LE--EETGSRRASRLYERLKKEEKILIILDNIWKCVD---------LEAVGIP 276 (1079)
Q Consensus 225 ~~i~~~l~~~-----------------~~--~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~---------~~~l~~~ 276 (1079)
..+...+... .+ .....+....+.+...+.++++||+||++.... +..+...
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 7666655420 00 011112222233323222489999999987543 1112111
Q ss_pred CCCCCCCcEEEEEecChhhhhh----------c--CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC
Q 044755 277 FGDDHKGCKLLLTARDRNVLFR----------M--GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACK 344 (1079)
Q Consensus 277 l~~~~~gs~iivTtR~~~v~~~----------~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~ 344 (1079)
. ....+.++|+|++...+... . .....+++.+|+.+|+.+++.+.+...... ...+.+..|++.++
T Consensus 159 ~-~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~~tg 236 (350)
T 2qen_A 159 Y-DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVELLD 236 (350)
T ss_dssp H-HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHHT
T ss_pred H-HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhC
Confidence 1 11247789999987643211 1 112479999999999999998876321111 12356889999999
Q ss_pred CCchHHHHHHHHHhc-CChhHHH-HHHHHhcCCCcCCCCCCchhhhhhHHHhhccC---ChHHHHHHHHHhcccCCCcch
Q 044755 345 GLPIALTTIARALRN-KSVPEWK-SALQELRMPSEVNFEGVPAEAYSTIELSFKNL---KGEQLKKFFMLCSLLGNSICT 419 (1079)
Q Consensus 345 glPlai~~~~~~l~~-~~~~~w~-~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~lk~cf~~~s~fp~~~~~ 419 (1079)
|.|+++..++..+.. .+...+. .+.+. +...+.-.+..+ ++. .+..+..+|. . ....
T Consensus 237 G~P~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~l~~~~~~-~~~~l~~la~-g-~~~~ 298 (350)
T 2qen_A 237 GIPGWLVVFGVEYLRNGDFGRAMKRTLEV---------------AKGLIMGELEELRRRSPR-YVDILRAIAL-G-YNRW 298 (350)
T ss_dssp TCHHHHHHHHHHHHHHCCHHHHHHHHHHH---------------HHHHHHHHHHHHHHHCHH-HHHHHHHHHT-T-CCSH
T ss_pred CCHHHHHHHHHHHhccccHhHHHHHHHHH---------------HHHHHHHHHHHHHhCChh-HHHHHHHHHh-C-CCCH
Confidence 999999998876532 2222221 11111 111111111222 555 6888888887 2 2344
Q ss_pred hHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHhhccccccCCCCcEee-hHHHHHHHH
Q 044755 420 SYLFQCCMGLGILQKANKLEDARNKLYALVHELRDSCLLLEGDSNQQLSM-HDVIRDVAI 478 (1079)
Q Consensus 420 ~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~-Hdlv~~~~~ 478 (1079)
..+.....+. .- ..+..+ +..+++.|.+.+++...+ +.|++ |++++++.+
T Consensus 299 ~~l~~~~~~~-~~--~~~~~~----~~~~l~~L~~~gli~~~~--~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 299 SLIRDYLAVK-GT--KIPEPR----LYALLENLKKMNWIVEED--NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHT-TC--CCCHHH----HHHHHHHHHHTTSEEEET--TEEEESSHHHHHHHT
T ss_pred HHHHHHHHHH-hC--CCCHHH----HHHHHHHHHhCCCEEecC--CEEEEecHHHHHHHc
Confidence 4544433111 00 112222 334588899999987642 45655 778887754
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=2.4e-15 Score=175.65 Aligned_cols=149 Identities=15% Similarity=0.103 Sum_probs=86.8
Q ss_pred CCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccccCCcccccCCcccceee
Q 044755 526 CLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILS 605 (1079)
Q Consensus 526 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~ 605 (1079)
+++|+.|++.++.... + +...|.++++|++|+|++|.+...++ ++.+++|++|+|++|.++.. ...++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~-~--~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l---~~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQ-I--SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCC-C--CGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE---EECTTCCEEE
T ss_pred CCCccEEEeeCCcCCC-C--CHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC---CCCCCcCEEE
Confidence 3466666666654332 2 33445666777777777776665543 66667777777777665541 1226677777
Q ss_pred ccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhc-cCCCC
Q 044755 606 FWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELM-HLPRL 684 (1079)
Q Consensus 606 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L 684 (1079)
+++|.+..+|. ..+++|++|++++| .+..+++..++.+++|++|++++|.+. +..+..+. .+++|
T Consensus 106 L~~N~l~~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~l~~~l~~L 171 (487)
T 3oja_A 106 AANNNISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEID-----------TVNFAELAASSDTL 171 (487)
T ss_dssp CCSSCCCCEEE--CCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCC-----------EEEGGGGGGGTTTC
T ss_pred CcCCcCCCCCc--cccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCC-----------CcChHHHhhhCCcc
Confidence 77776666544 24566777777665 555555555666667777776666543 11233332 45566
Q ss_pred cEEEEEeeCCC
Q 044755 685 TTLEVHVKNDN 695 (1079)
Q Consensus 685 ~~L~l~~~~~~ 695 (1079)
+.|++++|.+.
T Consensus 172 ~~L~Ls~N~l~ 182 (487)
T 3oja_A 172 EHLNLQYNFIY 182 (487)
T ss_dssp CEEECTTSCCC
T ss_pred cEEecCCCccc
Confidence 66665554443
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=4.9e-14 Score=151.35 Aligned_cols=189 Identities=23% Similarity=0.312 Sum_probs=155.8
Q ss_pred ccCCcCCCCccccccceeEEEecCCCCCCCCC--ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccc
Q 044755 491 RNEDVWEWPDDIALKECYAISLRGCSIHELPE--GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLL 568 (1079)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~ 568 (1079)
.+......+. ..+..++++.+.++.+..++. ...+++|+.|.+.++... .+ +...|.++++|++|++++|.+..
T Consensus 24 ~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i--~~~~~~~l~~L~~L~l~~n~l~~ 99 (270)
T 2o6q_A 24 SSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TL--PAGIFKELKNLETLWVTDNKLQA 99 (270)
T ss_dssp TTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CC--CTTTTSSCTTCCEEECCSSCCCC
T ss_pred cCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-ee--ChhhhcCCCCCCEEECCCCcCCc
Confidence 3333444343 235679999999999988875 447999999999987543 55 77778999999999999999999
Q ss_pred cCcc-ccccccccEEeccccccCC--cccccCCcccceeeccCCcCcccChh-hccCCcccEEcccccccccccChhhhh
Q 044755 569 LPSS-IDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVIS 644 (1079)
Q Consensus 569 lp~~-i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~ 644 (1079)
+|.. +..+++|++|++++|.++. +..++++++|++|++++|.+..+|.. +..+++|++|++++| .+..+++..+.
T Consensus 100 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 178 (270)
T 2o6q_A 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFD 178 (270)
T ss_dssp CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhc
Confidence 8764 6899999999999999988 46689999999999999999999876 789999999999998 78889888789
Q ss_pred cccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCC
Q 044755 645 RLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDN 695 (1079)
Q Consensus 645 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 695 (1079)
++++|++|++++|.+. ......+..+++|+.|++++|...
T Consensus 179 ~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 179 KLTELKTLKLDNNQLK-----------RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TCTTCCEEECCSSCCS-----------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCCcCEEECCCCcCC-----------cCCHHHhccccCCCEEEecCCCee
Confidence 9999999999998765 112234677889999999877643
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=3.1e-14 Score=154.20 Aligned_cols=175 Identities=19% Similarity=0.271 Sum_probs=137.0
Q ss_pred CCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccccc-CccccccccccEEeccccccCCcccccCCcccce
Q 044755 525 ECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEI 603 (1079)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~ 603 (1079)
.+++++++.+.++.. ..+ |..++ +.+++|++++|.+..+ |..+..+++|++|+|++|.++.....+.+.+|++
T Consensus 8 ~l~~l~~l~~~~~~l-~~i--p~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 8 KVASHLEVNCDKRNL-TAL--PPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81 (290)
T ss_dssp CSTTCCEEECTTSCC-SSC--CSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCE
T ss_pred ccCCccEEECCCCCC-CcC--CCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCE
Confidence 467788898887643 345 65543 6789999999999877 5678999999999999999988444589999999
Q ss_pred eeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCC
Q 044755 604 LSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPR 683 (1079)
Q Consensus 604 L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 683 (1079)
|++++|.+..+|..+..+++|++|++++| .++.++++.+.++++|++|++++|.+. ......+..+++
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~ 149 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELK-----------TLPPGLLTPTPK 149 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCC-----------CCCTTTTTTCTT
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCC-----------ccChhhcccccC
Confidence 99999999999998999999999999997 788888888899999999999988765 112334567888
Q ss_pred CcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeecccc
Q 044755 684 LTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQ 729 (1079)
Q Consensus 684 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~ 729 (1079)
|+.|+++.|.+..+|...+ ..+++|+.|+++++.
T Consensus 150 L~~L~L~~N~l~~l~~~~~------------~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGLL------------NGLENLDTLLLQENS 183 (290)
T ss_dssp CCEEECTTSCCSCCCTTTT------------TTCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccCHHHh------------cCcCCCCEEECCCCc
Confidence 8999888887777765432 124556666665544
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=1.9e-14 Score=151.50 Aligned_cols=150 Identities=13% Similarity=0.196 Sum_probs=74.7
Q ss_pred ccceeEEEecCCCCCCCCC--ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecC-ccccccCc-cccccccc
Q 044755 504 LKECYAISLRGCSIHELPE--GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTR-MQLLLLPS-SIDLLVNL 579 (1079)
Q Consensus 504 ~~~~~~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~i~~lp~-~i~~L~~L 579 (1079)
...++.+.+.++.+..++. ...+++|++|++.++.....+ +...|.++++|++|++++ |.++.+|. .+..+++|
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i--~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL--ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE--CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee--CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 3355555555555555443 224555555555554322233 333445555555555555 55555442 34555555
Q ss_pred cEEeccccccCCcccccCCcccc---eeeccCC-cCcccChh-hccCCccc-EEcccccccccccChhhhhcccccceee
Q 044755 580 QTLCLVECMLDDIAIIGKLKNLE---ILSFWGS-VIVMLPEE-LGHLTKLR-QLDLSNCFKLKVIAPNVISRLVRLEELY 653 (1079)
Q Consensus 580 ~~L~L~~~~l~~~~~i~~L~~L~---~L~l~~~-~l~~lp~~-i~~L~~L~-~L~l~~~~~l~~~~~~~l~~L~~L~~L~ 653 (1079)
++|++++|.++..+.++.+.+|+ +|++++| .+..+|.. +..+++|+ +|++++| .++.+|+..+.. ++|++|+
T Consensus 108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTT-CEEEEEE
T ss_pred CEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCC-CCCCEEE
Confidence 55555555555422244455544 5555555 55555433 45555555 5555554 444554443333 4555555
Q ss_pred cccc
Q 044755 654 MSNC 657 (1079)
Q Consensus 654 l~~~ 657 (1079)
+++|
T Consensus 186 L~~n 189 (239)
T 2xwt_C 186 LNKN 189 (239)
T ss_dssp CTTC
T ss_pred cCCC
Confidence 5554
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=2.2e-14 Score=154.20 Aligned_cols=129 Identities=23% Similarity=0.279 Sum_probs=76.9
Q ss_pred cCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccccCC--cccccCCccc
Q 044755 524 LECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNL 601 (1079)
Q Consensus 524 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L 601 (1079)
..+++|+.|.+.++... .+ . .+..+++|++|++++|.+..++ .++.+++|++|++++|.++. +..++++++|
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~---~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SV---Q-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CC---T-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccccceeeeeeCCCCcc-cc---c-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 34566666666655422 11 1 2455666666666666666543 56666666666666666655 2335666666
Q ss_pred ceeeccCCcCcccChh-hccCCcccEEcccccccccccChhhhhcccccceeecccccc
Q 044755 602 EILSFWGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 602 ~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 659 (1079)
++|++++|.+..+|.. ++.+++|++|++++| .+..+++..++.+++|++|++++|.+
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCc
Confidence 6666666666665543 466666666666665 55666655556666666666666544
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=1.5e-14 Score=152.30 Aligned_cols=138 Identities=17% Similarity=0.187 Sum_probs=100.0
Q ss_pred CCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcc-ccccCc-cccccccccEEeccc-cccCC--
Q 044755 517 IHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQ-LLLLPS-SIDLLVNLQTLCLVE-CMLDD-- 591 (1079)
Q Consensus 517 ~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~lp~-~i~~L~~L~~L~L~~-~~l~~-- 591 (1079)
+..+|. -.++++.|.+.++.. ..+ +...|.++++|++|++++|. ++.+|. .+..+++|++|++++ |.++.
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l-~~i--~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHL-RTI--PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCC-SEE--CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC--CCCcccEEEEeCCcc-eEE--CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 555665 234788888877653 344 55566778888888888886 777765 577888888888887 77776
Q ss_pred cccccCCcccceeeccCCcCcccChhhccCCccc---EEcccccccccccChhhhhcccccc-eeeccccccc
Q 044755 592 IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLR---QLDLSNCFKLKVIAPNVISRLVRLE-ELYMSNCFVE 660 (1079)
Q Consensus 592 ~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~---~L~l~~~~~l~~~~~~~l~~L~~L~-~L~l~~~~~~ 660 (1079)
+..+.++++|++|++++|.+..+|. +..+++|+ +|++++|..++.+++..+.++++|+ +|++++|.+.
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 3567788888888888887777776 67777776 8888876567777776677777888 7877776543
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=5.2e-14 Score=152.56 Aligned_cols=172 Identities=24% Similarity=0.261 Sum_probs=137.0
Q ss_pred ccceeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEe
Q 044755 504 LKECYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLC 583 (1079)
Q Consensus 504 ~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~ 583 (1079)
...++.+.+.++.+..++....+++|+.|.+.++.... + +. +.++++|++|++++|.+..+|. ++.+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~-~--~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-I--KP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-C--GG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCC-C--cc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 56788888888888888776678889999988875433 2 22 6788889999999998888764 88888999999
Q ss_pred ccccccCCcccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccC
Q 044755 584 LVECMLDDIAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDD 663 (1079)
Q Consensus 584 L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 663 (1079)
+++|.++.+..++.+++|++|++++|.+..+ ..+..+++|++|++++| .+..+++ ++.+++|++|++++|.+.
T Consensus 119 L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~--- 191 (291)
T 1h6t_A 119 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHIS--- 191 (291)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred CCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCC---
Confidence 9999888877788888999999998888877 56888889999999887 6777765 788889999998888664
Q ss_pred CCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCC
Q 044755 664 EGPNSERINARLDELMHLPRLTTLEVHVKNDNVLP 698 (1079)
Q Consensus 664 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 698 (1079)
.+..+..+++|+.|+++++.+...+
T Consensus 192 ----------~l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 ----------DLRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ----------BCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred ----------CChhhccCCCCCEEECcCCcccCCc
Confidence 1234777888888888887665544
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=6.4e-14 Score=148.61 Aligned_cols=176 Identities=23% Similarity=0.338 Sum_probs=141.8
Q ss_pred ceeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCc-cccccccccEEec
Q 044755 506 ECYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCL 584 (1079)
Q Consensus 506 ~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L 584 (1079)
..+++.+.++.+..+|..+. ++++.|.+.++... .+ +...|.++++|++|++++|.+..++. .+..+++|++|+|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~-~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLA-TL--SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCC-CC--CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcC-cc--CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 34678888888888887654 68999999887654 33 45567889999999999999988754 4789999999999
Q ss_pred cccccCC--cccccCCcccceeeccCCcCcccChh-hccCCcccEEcccccccccccChhhhhcccccceeecccccccc
Q 044755 585 VECMLDD--IAIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEW 661 (1079)
Q Consensus 585 ~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~ 661 (1079)
++|.++. +..++.+.+|++|++++|.+..+|.. +..+++|++|++++| .++.+++..++.+++|++|++++|.+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~- 168 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQ- 168 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCC-
Confidence 9999887 46678999999999999999988776 588999999999997 788888877889999999999988765
Q ss_pred cCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCC
Q 044755 662 DDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVL 697 (1079)
Q Consensus 662 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 697 (1079)
......+..+++|+.|++++|.....
T Consensus 169 ----------~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 169 ----------SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ----------CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ----------ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 12234567788889998888776543
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=7.7e-14 Score=149.90 Aligned_cols=175 Identities=24% Similarity=0.285 Sum_probs=147.8
Q ss_pred cccceeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCcc-ccccccccE
Q 044755 503 ALKECYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSS-IDLLVNLQT 581 (1079)
Q Consensus 503 ~~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~ 581 (1079)
....++.+.+.++.+..++....+++|+.|.+.++.... + ..+..+++|++|++++|.++.+|.. ++.+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-I----SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-C----GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-c----hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 356789999999999888877789999999999876432 2 2468999999999999999988665 689999999
Q ss_pred EeccccccCC--cccccCCcccceeeccCCcCcccChh-hccCCcccEEcccccccccccChhhhhcccccceeeccccc
Q 044755 582 LCLVECMLDD--IAIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCF 658 (1079)
Q Consensus 582 L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 658 (1079)
|++++|.++. +..++++++|++|++++|.+..+|.. ++.+++|++|++++| .+..+++..++.+++|++|++++|.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCc
Confidence 9999999988 35589999999999999999998765 689999999999998 7888888878999999999999987
Q ss_pred ccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCC
Q 044755 659 VEWDDEGPNSERINARLDELMHLPRLTTLEVHVKND 694 (1079)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 694 (1079)
+. ......+..+++|+.|++++|..
T Consensus 193 l~-----------~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 193 LK-----------SVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CS-----------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred CC-----------ccCHHHHhCCcCCCEEEccCCCc
Confidence 65 12234567788999998887654
No 90
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.52 E-value=5.5e-13 Score=150.03 Aligned_cols=288 Identities=15% Similarity=0.200 Sum_probs=170.0
Q ss_pred CccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc-----cCHHHHHHHH
Q 044755 153 GYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT-----LDIKKIQQEI 227 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~~~~~~i 227 (1079)
....|+||+++++.|.+ +.. +++.|+|++|+|||||++++.+... . ..+|+++... .+....+..+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHHHH
Confidence 44578999999999999 765 6999999999999999999998764 1 2588887643 3445555444
Q ss_pred HHHhC------------------CCccc---c-c----hHHHHHHHHHHHHcC--CcEEEEEeCCCCcc-----cccccc
Q 044755 228 AEKLG------------------LVLEE---E-T----GSRRASRLYERLKKE--EKILIILDNIWKCV-----DLEAVG 274 (1079)
Q Consensus 228 ~~~l~------------------~~~~~---~-~----~~~~~~~l~~~l~~~--~~~LlvlDdv~~~~-----~~~~l~ 274 (1079)
...+. ..... . . .......+.+.+.+. ++++||+||++... ++..+.
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHH
Confidence 44331 00000 0 0 011233445555431 48999999997632 222111
Q ss_pred CCCCCCCCCcEEEEEecChhhhhh----------c-CC-CceEeCCCCCHHHHHHHHHHHhcC-CCCChhhHHHHHHHHH
Q 044755 275 IPFGDDHKGCKLLLTARDRNVLFR----------M-GS-QKNFSIDILNEEEAWRLFKLMADD-HVENRELQSTATEVAQ 341 (1079)
Q Consensus 275 ~~l~~~~~gs~iivTtR~~~v~~~----------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~ 341 (1079)
..+.....+.++|+|+|....... + +. ...+++.+|+.+++.+++.+.++. ...... ...|++
T Consensus 162 ~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~ 237 (357)
T 2fna_A 162 AYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYE 237 (357)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHH
T ss_pred HHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHHH
Confidence 111111246789999998653221 1 11 257999999999999999887631 111121 278999
Q ss_pred HcCCCchHHHHHHHHHhcC-ChhHHHH-HHHHhcCCCcCCCCCCchhhhhhHH-Hhhc--cCChHHHHHHHHHhcccCCC
Q 044755 342 ACKGLPIALTTIARALRNK-SVPEWKS-ALQELRMPSEVNFEGVPAEAYSTIE-LSFK--NLKGEQLKKFFMLCSLLGNS 416 (1079)
Q Consensus 342 ~~~glPlai~~~~~~l~~~-~~~~w~~-~~~~l~~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~lk~cf~~~s~fp~~ 416 (1079)
.++|.|+++..++..+... +..+|.. +.+.. ...+...+. +.+. .+|+. .+..+..+|.-+
T Consensus 238 ~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~g~-- 303 (357)
T 2fna_A 238 KIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-----------KKLILKEFENFLHGREIARKR-YLNIMRTLSKCG-- 303 (357)
T ss_dssp HHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-----------HHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTTCB--
T ss_pred HhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-----------HHHHHHHHHHHhhccccccHH-HHHHHHHHHcCC--
Confidence 9999999999998776432 3333321 11110 000111222 2221 57776 688888888722
Q ss_pred cchhHHHHHHH-hhccccccCCHHHHHHHHHHHHHHHHhhccccccCCCCcEe-ehHHHHHHH
Q 044755 417 ICTSYLFQCCM-GLGILQKANKLEDARNKLYALVHELRDSCLLLEGDSNQQLS-MHDVIRDVA 477 (1079)
Q Consensus 417 ~~~~~li~~w~-aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~-~Hdlv~~~~ 477 (1079)
..+.+....- ..|. ..+.. .+.++++.|.+.+++...+ +.|+ .|++++++.
T Consensus 304 -~~~~l~~~~~~~~g~---~~~~~----~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 -KWSDVKRALELEEGI---EISDS----EIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp -CHHHHHHHHHHHHCS---CCCHH----HHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred -CHHHHHHHHHHhcCC---CCCHH----HHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 4444432210 1121 01112 2334588899999987643 4566 578888764
No 91
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.51 E-value=5.2e-14 Score=164.37 Aligned_cols=211 Identities=16% Similarity=0.225 Sum_probs=157.9
Q ss_pred ccceeEEEecCCCCCCCCC--ccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccE
Q 044755 504 LKECYAISLRGCSIHELPE--GLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQT 581 (1079)
Q Consensus 504 ~~~~~~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~ 581 (1079)
..+++.+.+++|.+..++. ...+++|++|++.+|...... + |..+++|++|+|++|.++.+|.. ++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~---l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D---LESLSTLRTLDLNNNYVQELLVG----PSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE--E---CTTCTTCCEEECCSSEEEEEEEC----TTCCE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc--c---cccCCCCCEEEecCCcCCCCCCC----CCcCE
Confidence 3579999999999988763 347999999999998764433 3 68999999999999999988753 89999
Q ss_pred EeccccccCC-cccccCCcccceeeccCCcCccc-ChhhccCCcccEEcccccccccccChhhhh-cccccceeeccccc
Q 044755 582 LCLVECMLDD-IAIIGKLKNLEILSFWGSVIVML-PEELGHLTKLRQLDLSNCFKLKVIAPNVIS-RLVRLEELYMSNCF 658 (1079)
Q Consensus 582 L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~-~L~~L~~L~l~~~~ 658 (1079)
|++++|.+.. +. ..+++|++|++++|.+..+ |..++.+++|++|++++| .+...++..+. .+++|++|++++|.
T Consensus 104 L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc
Confidence 9999999988 33 3578999999999999887 557899999999999998 67765555565 79999999999997
Q ss_pred ccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccc
Q 044755 659 VEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDL 738 (1079)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l 738 (1079)
+. .+.....+++|+.|++++|.+..+|+.+ ..+++|+.|+++++.... +...+
T Consensus 181 l~-------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------------~~l~~L~~L~Ls~N~l~~-lp~~l 233 (487)
T 3oja_A 181 IY-------------DVKGQVVFAKLKTLDLSSNKLAFMGPEF-------------QSAAGVTWISLRNNKLVL-IEKAL 233 (487)
T ss_dssp CC-------------EEECCCCCTTCCEEECCSSCCCEECGGG-------------GGGTTCSEEECTTSCCCE-ECTTC
T ss_pred cc-------------cccccccCCCCCEEECCCCCCCCCCHhH-------------cCCCCccEEEecCCcCcc-cchhh
Confidence 65 1123345888999999988877666542 124566666666654321 11111
Q ss_pred cccccCCCceeeccCCC
Q 044755 739 DREGFSRLKHLHVQNNP 755 (1079)
Q Consensus 739 ~~~~~~~L~~L~l~~~~ 755 (1079)
..+++|+.|++.+++
T Consensus 234 --~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 234 --RFSQNLEHFDLRGNG 248 (487)
T ss_dssp --CCCTTCCEEECTTCC
T ss_pred --ccCCCCCEEEcCCCC
Confidence 334566666665553
No 92
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=1.6e-14 Score=158.83 Aligned_cols=199 Identities=15% Similarity=0.166 Sum_probs=150.0
Q ss_pred CCCcccEEEecCCCCcccccCCcchh-ccCCcceEEEecCccccccCcccccc-----ccccEEeccccccCC--ccccc
Q 044755 525 ECLRLEFLHINPKDSFFEINNPCNFF-TGMRKLRVVDFTRMQLLLLPSSIDLL-----VNLQTLCLVECMLDD--IAIIG 596 (1079)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~i~~lp~~i~~L-----~~L~~L~L~~~~l~~--~~~i~ 596 (1079)
.+++|+.|++.++.....+ |..+| ..+++|++|++++|.+..+|..++.+ ++|++|++++|.+.. +..++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTA--PPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCC--CCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchh--HHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 4788999999887665555 66554 88999999999999998888888887 899999999999887 47889
Q ss_pred CCcccceeeccCCcCcc---cChhh--ccCCcccEEcccccccccc---cChhhhhcccccceeecccccccccCCCCCc
Q 044755 597 KLKNLEILSFWGSVIVM---LPEEL--GHLTKLRQLDLSNCFKLKV---IAPNVISRLVRLEELYMSNCFVEWDDEGPNS 668 (1079)
Q Consensus 597 ~L~~L~~L~l~~~~l~~---lp~~i--~~L~~L~~L~l~~~~~l~~---~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 668 (1079)
++++|++|++++|.+.. +|..+ +.+++|++|++++| .++. ++...+..+++|++|++++|.+...
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~------ 243 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDA------ 243 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS------
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcc------
Confidence 99999999999997543 34555 78899999999997 6663 3334456788999999998876511
Q ss_pred hhhhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccccccccCCCce
Q 044755 669 ERINARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKH 748 (1079)
Q Consensus 669 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~ 748 (1079)
.....+..+++|+.|+++.|.+..+|..+. ++|+.|+++++..... +. ...+++|+.
T Consensus 244 ----~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---------------~~L~~L~Ls~N~l~~~--p~--~~~l~~L~~ 300 (312)
T 1wwl_A 244 ----AGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---------------AKLSVLDLSYNRLDRN--PS--PDELPQVGN 300 (312)
T ss_dssp ----CCCSCCCCCTTCCEEECTTSCCSSCCSSCC---------------SEEEEEECCSSCCCSC--CC--TTTSCEEEE
T ss_pred ----cchhhhhhcCCCCEEECCCCccChhhhhcc---------------CCceEEECCCCCCCCC--hh--HhhCCCCCE
Confidence 012334557889999999888887776532 4778888887754322 22 256799999
Q ss_pred eeccCCC
Q 044755 749 LHVQNNP 755 (1079)
Q Consensus 749 L~l~~~~ 755 (1079)
|++.+++
T Consensus 301 L~L~~N~ 307 (312)
T 1wwl_A 301 LSLKGNP 307 (312)
T ss_dssp EECTTCT
T ss_pred EeccCCC
Confidence 9999875
No 93
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.48 E-value=1e-12 Score=151.05 Aligned_cols=301 Identities=14% Similarity=0.097 Sum_probs=178.5
Q ss_pred cccccHHHHHHHHHHHh-c----C--CCceEEEE--EcCCCCcHHHHHHHHHHHhhhc---CCCC-EEEEEEeCCccCHH
Q 044755 155 EAFESRLCALKSVQNAL-T----D--VNVSIVGV--YGMGGIGKTTLVKEVARQARED---KLFD-LVVFSEVSQTLDIK 221 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~~~~~~~~~ 221 (1079)
..|+||+.+++++.+++ . . .....+.| +|++|+||||||+.+++..... ..|+ .++|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 46899999999999988 4 2 24566777 9999999999999999876532 1233 36888887777899
Q ss_pred HHHHHHHHHhCCCccc--cchHHHHHHHHHHHH-cCCcEEEEEeCCCCcc--------ccccccCCCCC-C--C--CCcE
Q 044755 222 KIQQEIAEKLGLVLEE--ETGSRRASRLYERLK-KEEKILIILDNIWKCV--------DLEAVGIPFGD-D--H--KGCK 285 (1079)
Q Consensus 222 ~~~~~i~~~l~~~~~~--~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~--------~~~~l~~~l~~-~--~--~gs~ 285 (1079)
.++..++.+++..... .........+.+.+. .+++++||+||++... .+..+...+.. . . ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 9999999998765331 122233444555553 3689999999998742 12222121111 1 2 3455
Q ss_pred EEEEecChhhhhhc---------CCCceEeCCCCCHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHHcC------CCchH
Q 044755 286 LLLTARDRNVLFRM---------GSQKNFSIDILNEEEAWRLFKLMADDH-VENRELQSTATEVAQACK------GLPIA 349 (1079)
Q Consensus 286 iivTtR~~~v~~~~---------~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~i~~~~~------glPla 349 (1079)
||+||+...+...+ .....+++.+++.++++++|..++... .......+.+..|++.++ |.|..
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~ 261 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARR 261 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHH
Confidence 88888755432111 112239999999999999998776211 111122456888999999 99976
Q ss_pred HHHHHHHHh------cC---ChhHHHHHHHHhcCCCcCCCCCCchhhhhhHHHhhccCChHHHHHHHHHhcccC----CC
Q 044755 350 LTTIARALR------NK---SVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKFFMLCSLLG----NS 416 (1079)
Q Consensus 350 i~~~~~~l~------~~---~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cf~~~s~fp----~~ 416 (1079)
+..+..... .. +...+..+...... ...+.-++..||.+ .+.++..++.+. ..
T Consensus 262 ~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 262 AIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEATLGGMEW 327 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCC
Confidence 555443221 11 22334434333110 12334456789987 688888777642 34
Q ss_pred cchhHHHHHHHhh--cccc-ccCCHHHHHHHHHHHHHHHHhhccccccC----CCCcEeehHHH
Q 044755 417 ICTSYLFQCCMGL--GILQ-KANKLEDARNKLYALVHELRDSCLLLEGD----SNQQLSMHDVI 473 (1079)
Q Consensus 417 ~~~~~li~~w~ae--g~i~-~~~~~~~~~~~~~~~~~~L~~~~l~~~~~----~~~~~~~Hdlv 473 (1079)
+...++...+... .... ..-+ ...+.+++++|...+++.... ..++|++|++.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNVKPRG----YTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCCCCCC----HHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred ccHHHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 5555555544211 1111 0111 123345588899999986532 23346565554
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=2.8e-14 Score=159.06 Aligned_cols=129 Identities=19% Similarity=0.200 Sum_probs=77.8
Q ss_pred CcceEEEecCccccccCccccccccccEEeccccccCC---cccccCCcccceeeccCCcCc-ccChhhccCCcccEEcc
Q 044755 554 RKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD---IAIIGKLKNLEILSFWGSVIV-MLPEELGHLTKLRQLDL 629 (1079)
Q Consensus 554 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~---~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l 629 (1079)
+.+++|+++++.+...+..+..+++|++|++++|.+.. +..+.++++|++|++++|.+. ..|..++++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 56677777777666665556667777777777776553 355666777777777776554 34556666777777777
Q ss_pred ccccccccc-Chhhhhcccccceeecccc-cccccCCCCCchhhhcchhhhccCC-CCcEEEEEee
Q 044755 630 SNCFKLKVI-APNVISRLVRLEELYMSNC-FVEWDDEGPNSERINARLDELMHLP-RLTTLEVHVK 692 (1079)
Q Consensus 630 ~~~~~l~~~-~~~~l~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~ 692 (1079)
++|..++.. .+..+.++++|++|++++| .+. .......+..++ +|+.|+++++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~----------~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT----------EKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC----------HHHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC----------hHHHHHHHHhcccCCCEEEeCCC
Confidence 776444431 1233566677777777666 432 111234455566 6666666554
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=2e-13 Score=162.41 Aligned_cols=174 Identities=24% Similarity=0.258 Sum_probs=146.5
Q ss_pred cccceeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEE
Q 044755 503 ALKECYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTL 582 (1079)
Q Consensus 503 ~~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 582 (1079)
.+..++.+.+.++.+..++....+++|+.|.+.++.... + +. +..+++|++|+|++|.+..+| .++.+++|++|
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~--~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-I--KP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-C--GG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-C--hh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 356788889999999888877789999999999876543 2 22 689999999999999998876 68999999999
Q ss_pred eccccccCCcccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeeccccccccc
Q 044755 583 CLVECMLDDIAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWD 662 (1079)
Q Consensus 583 ~L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~ 662 (1079)
+|++|.+..++.++.|++|+.|+|++|.+..+ ..+..+++|++|+|++| .+..+++ +..+++|+.|++++|.+.
T Consensus 115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~-- 188 (605)
T 1m9s_A 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHIS-- 188 (605)
T ss_dssp ECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC--
T ss_pred EecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCC--
Confidence 99999998877899999999999999998888 57889999999999998 6777766 889999999999998764
Q ss_pred CCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCc
Q 044755 663 DEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPE 699 (1079)
Q Consensus 663 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 699 (1079)
.+..+..+++|+.|+++.+.+...|.
T Consensus 189 -----------~l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 189 -----------DLRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp -----------BCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred -----------CChHHccCCCCCEEEccCCcCcCCcc
Confidence 12467888999999998887665543
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=4.8e-14 Score=157.18 Aligned_cols=174 Identities=19% Similarity=0.186 Sum_probs=121.4
Q ss_pred cceEEEecCccccccCcccccc--ccccEEeccccccCC-cccccCCcccceeeccCCcCcc--cChhhccCCcccEEcc
Q 044755 555 KLRVVDFTRMQLLLLPSSIDLL--VNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSVIVM--LPEELGHLTKLRQLDL 629 (1079)
Q Consensus 555 ~Lr~L~L~~~~i~~lp~~i~~L--~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l 629 (1079)
.++.++++++.+. |..+..+ .++++|++++|.+.. +..+.++.+|++|++++|.+.. +|..+.++++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4678888888776 5567777 899999999999887 6668899999999999998764 7888899999999999
Q ss_pred cccccccccChhhhhcccccceeeccccc-ccccCCCCCchhhhcchhhhccCCCCcEEEEEee-CCCC--CCchhhhcc
Q 044755 630 SNCFKLKVIAPNVISRLVRLEELYMSNCF-VEWDDEGPNSERINARLDELMHLPRLTTLEVHVK-NDNV--LPEGFFARK 705 (1079)
Q Consensus 630 ~~~~~l~~~~~~~l~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~--~~~~~~~~~ 705 (1079)
++| .+....+..++++++|++|++++|. +. .......+..+++|+.|+++++ .+.. ++..
T Consensus 126 ~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~----------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~----- 189 (336)
T 2ast_B 126 EGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFS----------EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA----- 189 (336)
T ss_dssp TTC-BCCHHHHHHHTTCTTCSEEECTTCBSCC----------HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-----
T ss_pred cCc-ccCHHHHHHHhcCCCCCEEECCCCCCCC----------HHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-----
Confidence 998 5664445568899999999999883 32 1123445777889999998876 5432 1111
Q ss_pred cceeeeeeecCCc-ccceEeecccc-ccc-cccccccccccCCCceeeccCCC
Q 044755 706 LERFKISKLQGIK-DVEYLCLDKSQ-DVK-NVLFDLDREGFSRLKHLHVQNNP 755 (1079)
Q Consensus 706 L~~L~l~~~~~l~-~L~~L~L~~~~-~~~-~~~~~l~~~~~~~L~~L~l~~~~ 755 (1079)
+..++ +|+.|+++++. ... ..+.. ....+++|+.|++.+|.
T Consensus 190 --------~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 190 --------VAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp --------HHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCT
T ss_pred --------HHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCCCC
Confidence 12245 66666666653 121 11111 11345666666666654
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.45 E-value=1.1e-12 Score=146.71 Aligned_cols=102 Identities=21% Similarity=0.255 Sum_probs=79.7
Q ss_pred eEEEecCccccccCccccccccccEEeccccccCC-c-ccccCCcccceeeccCCcC-cccCh-hhccCCcccEEccccc
Q 044755 557 RVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-I-AIIGKLKNLEILSFWGSVI-VMLPE-ELGHLTKLRQLDLSNC 632 (1079)
Q Consensus 557 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~l-~~lp~-~i~~L~~L~~L~l~~~ 632 (1079)
++++.++++++++|..+ ..++++|+|++|.++. | ..+.+|++|++|+|++|.+ +.+|. .+.++++|+++...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 67888999999999877 4689999999999888 4 4688899999999999876 44665 3678888876555444
Q ss_pred ccccccChhhhhcccccceeeccccccc
Q 044755 633 FKLKVIAPNVISRLVRLEELYMSNCFVE 660 (1079)
Q Consensus 633 ~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 660 (1079)
..+..++++.+..+++|++|++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred CcccccCchhhhhccccccccccccccc
Confidence 4788888777888888888888877654
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=4.1e-13 Score=145.50 Aligned_cols=160 Identities=24% Similarity=0.237 Sum_probs=121.1
Q ss_pred CCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccccCCcccc
Q 044755 516 SIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAII 595 (1079)
Q Consensus 516 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~~~~i 595 (1079)
.+..+.....+++|+.|.+.++... .+ + .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++.+
T Consensus 35 ~~~~~~~~~~l~~L~~L~l~~~~i~-~~--~--~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l 108 (291)
T 1h6t_A 35 SVTDAVTQNELNSIDQIIANNSDIK-SV--Q--GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSL 108 (291)
T ss_dssp CTTSEECHHHHHTCCEEECTTSCCC-CC--T--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGG
T ss_pred CcccccchhhcCcccEEEccCCCcc-cC--h--hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhh
Confidence 3333333346778888888876542 22 2 25778889999999998888876 88889999999999988887678
Q ss_pred cCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcch
Q 044755 596 GKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARL 675 (1079)
Q Consensus 596 ~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 675 (1079)
+++++|++|++++|.+..++ .+..+++|++|++++| .+..++ .++++++|++|++++|.+. . .
T Consensus 109 ~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~N~l~------------~-~ 171 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDIT--VLSRLTKLDTLSLEDNQIS------------D-I 171 (291)
T ss_dssp TTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCG--GGGGCTTCSEEECCSSCCC------------C-C
T ss_pred ccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcch--hhccCCCCCEEEccCCccc------------c-c
Confidence 88999999999998888774 5788889999999887 677763 3788889999998888664 1 1
Q ss_pred hhhccCCCCcEEEEEeeCCCCCC
Q 044755 676 DELMHLPRLTTLEVHVKNDNVLP 698 (1079)
Q Consensus 676 ~~l~~l~~L~~L~l~~~~~~~~~ 698 (1079)
..+..+++|+.|+++.|.+..++
T Consensus 172 ~~l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 172 VPLAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp GGGTTCTTCCEEECCSSCCCBCG
T ss_pred hhhcCCCccCEEECCCCcCCCCh
Confidence 12677888888888877766554
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=5.4e-13 Score=137.89 Aligned_cols=149 Identities=15% Similarity=0.247 Sum_probs=120.4
Q ss_pred eEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCc-cccccccccEEeccc
Q 044755 508 YAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVE 586 (1079)
Q Consensus 508 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~ 586 (1079)
+.+.++++.+..+|..+ ...++.|.+.++...... +..+|.++++|++|+|++|.++.+|. .+..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~--~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLE--ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEEC--CCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccC--chhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46788888888887644 345688888887654433 45667889999999999999988765 688999999999999
Q ss_pred cccCC--cccccCCcccceeeccCCcCccc-ChhhccCCcccEEcccccccccccChhhhhcccccceeeccccccc
Q 044755 587 CMLDD--IAIIGKLKNLEILSFWGSVIVML-PEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVE 660 (1079)
Q Consensus 587 ~~l~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 660 (1079)
|.++. +..++.+.+|++|++++|.+..+ |..+..+++|++|++++| .++.+++..+..+++|++|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99887 45688899999999999988887 566888999999999987 788887777888999999999887654
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.44 E-value=7.6e-13 Score=137.82 Aligned_cols=150 Identities=23% Similarity=0.275 Sum_probs=127.6
Q ss_pred ceeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCcc-ccccccccEEec
Q 044755 506 ECYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSS-IDLLVNLQTLCL 584 (1079)
Q Consensus 506 ~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L 584 (1079)
....+...++.+..+|..+. ++|+.|++.++.... + +...|.++++|++|+|++|.+..+|.. +..+++|++|+|
T Consensus 20 s~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~-~--~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITK-L--EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCC-C--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCc-c--CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 34567777788888887554 889999999876543 3 456678999999999999999998765 689999999999
Q ss_pred cccccCC-c-ccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeeccccccc
Q 044755 585 VECMLDD-I-AIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVE 660 (1079)
Q Consensus 585 ~~~~l~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 660 (1079)
++|.++. + ..+..+.+|++|++++|.+..+|..+..+++|++|++++| .+..+++..+..+++|+.|++.+|.+.
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9999988 3 4578999999999999999999999999999999999998 788888887899999999999988654
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.44 E-value=9.9e-14 Score=152.34 Aligned_cols=227 Identities=14% Similarity=0.073 Sum_probs=141.7
Q ss_pred cCCCcccEEEecCCCCcccccCCcc--hhccCCcceEEEecCccccc-cCccc--cccccccEEeccccccCC--c----
Q 044755 524 LECLRLEFLHINPKDSFFEINNPCN--FFTGMRKLRVVDFTRMQLLL-LPSSI--DLLVNLQTLCLVECMLDD--I---- 592 (1079)
Q Consensus 524 ~~~~~Lr~L~l~~~~~~~~~~~~~~--~~~~l~~Lr~L~L~~~~i~~-lp~~i--~~L~~L~~L~L~~~~l~~--~---- 592 (1079)
.....++.+.+.+....... ... -+..++.|++|++++|.+.. .|..+ +.+++|++|+|++|.+.. +
T Consensus 61 ~~~~~l~~l~l~~~~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~ 138 (310)
T 4glp_A 61 VKALRVRRLTVGAAQVPAQL--LVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAE 138 (310)
T ss_dssp GSSCCCCEEEECSCCCBHHH--HHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH
T ss_pred hhhcceeEEEEeCCcCCHHH--HHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHH
Confidence 34455667776665432111 000 01234568888888888774 46666 788888888888888765 1
Q ss_pred ccccCCcccceeeccCCcCcccC-hhhccCCcccEEcccccccccc---cCh-hhhhcccccceeecccccccccCCCCC
Q 044755 593 AIIGKLKNLEILSFWGSVIVMLP-EELGHLTKLRQLDLSNCFKLKV---IAP-NVISRLVRLEELYMSNCFVEWDDEGPN 667 (1079)
Q Consensus 593 ~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~---~~~-~~l~~L~~L~~L~l~~~~~~~~~~~~~ 667 (1079)
..+..+++|++|++++|.+..+| ..++.+++|++|++++|. +.. ++. ..++.+++|++|++++|.+.
T Consensus 139 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~------- 210 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP-GLGERGLMAALCPHKFPAIQNLALRNTGME------- 210 (310)
T ss_dssp HHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT-TCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-------
T ss_pred HHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC-CccchhhhHHHhhhcCCCCCEEECCCCCCC-------
Confidence 34456888888888888887765 457788888888888873 322 221 12357888888888887653
Q ss_pred chhhhcchhh-hccCCCCcEEEEEeeCCCCC-CchhhhcccceeeeeeecCCcccceEeeccccccccccccccccccCC
Q 044755 668 SERINARLDE-LMHLPRLTTLEVHVKNDNVL-PEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSR 745 (1079)
Q Consensus 668 ~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 745 (1079)
........ ++.+++|+.|+++.|.+... |..+.. ..++++|+.|+++++... .+. ...+++
T Consensus 211 --~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~----------~~~~~~L~~L~Ls~N~l~-~lp----~~~~~~ 273 (310)
T 4glp_A 211 --TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR----------CMWSSALNSLNLSFAGLE-QVP----KGLPAK 273 (310)
T ss_dssp --CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS----------CCCCTTCCCEECCSSCCC-SCC----SCCCSC
T ss_pred --chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh----------ccCcCcCCEEECCCCCCC-chh----hhhcCC
Confidence 11112222 46777888888888777665 333211 123467888888776543 222 222478
Q ss_pred CceeeccCCCCcceecccCCcCCCCCCCCccceeeccccc
Q 044755 746 LKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLI 785 (1079)
Q Consensus 746 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 785 (1079)
|+.|+++++.-.. + +....+++|+.|++++++
T Consensus 274 L~~L~Ls~N~l~~-~-------~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 274 LRVLDLSSNRLNR-A-------PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CSCEECCSCCCCS-C-------CCTTSCCCCSCEECSSTT
T ss_pred CCEEECCCCcCCC-C-------chhhhCCCccEEECcCCC
Confidence 8999998874211 1 112677889999998753
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.43 E-value=8.1e-13 Score=140.06 Aligned_cols=153 Identities=22% Similarity=0.283 Sum_probs=89.8
Q ss_pred cccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCc-cccccccccEEeccccccCC--cccccCCccccee
Q 044755 528 RLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEIL 604 (1079)
Q Consensus 528 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L 604 (1079)
..+.+++.++.. ..+ |..+. ..|+.|++++|.+..++. .+..+++|++|+|++|.++. +..+.++++|++|
T Consensus 15 ~~~~l~~~~~~l-~~~--p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 15 GKKEVDCQGKSL-DSV--PSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGTEEECTTCCC-SSC--CSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCeEEecCCCCc-ccc--CCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 345566555432 233 43332 456677777777666533 46667777777777776665 3446667777777
Q ss_pred eccCCcCcccChh-hccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCC
Q 044755 605 SFWGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPR 683 (1079)
Q Consensus 605 ~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 683 (1079)
++++|.+..+|.. +..+++|++|++++| .++.+++..++.+++|++|++++|.+. ......+..+++
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~ 156 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQ-----------SIPAGAFDKLTN 156 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-----------CCCTTTTTTCTT
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCC-----------ccCHHHcCcCcC
Confidence 7777766666543 566677777777665 566666665666667777776666543 111223455556
Q ss_pred CcEEEEEeeCCCCCC
Q 044755 684 LTTLEVHVKNDNVLP 698 (1079)
Q Consensus 684 L~~L~l~~~~~~~~~ 698 (1079)
|+.|+++.|.+..++
T Consensus 157 L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 157 LQTLSLSTNQLQSVP 171 (251)
T ss_dssp CCEEECCSSCCSCCC
T ss_pred CCEEECCCCcCCccC
Confidence 666666555544443
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=6.8e-13 Score=134.75 Aligned_cols=147 Identities=17% Similarity=0.176 Sum_probs=97.6
Q ss_pred ccceeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccc-cCccccccccccEE
Q 044755 504 LKECYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLL-LPSSIDLLVNLQTL 582 (1079)
Q Consensus 504 ~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L 582 (1079)
...++++.+.++.+..++....+++|++|.+.++.. .. + ..+..+++|++|++++|.+.. .|..++.+++|++|
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~-~~---~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA-TN---Y-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCC-SC---C-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCC-Cc---c-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 456777777777777666545677777777776632 11 2 235667777777777777764 56667777777777
Q ss_pred eccccccCC--cccccCCcccceeeccCCc-CcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccc
Q 044755 583 CLVECMLDD--IAIIGKLKNLEILSFWGSV-IVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 583 ~L~~~~l~~--~~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 659 (1079)
++++|.+.. +..++++++|++|++++|. +..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT--TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH--HhccCCCCCEEEeeCccc
Confidence 777777665 5667777777777777775 66665 5667777777777776 566554 266677777777766644
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.41 E-value=5e-13 Score=135.74 Aligned_cols=148 Identities=17% Similarity=0.207 Sum_probs=80.2
Q ss_pred CCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccccCC--cccccCCcccc
Q 044755 525 ECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLE 602 (1079)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~ 602 (1079)
.+++|+.|.+.++... .+ + .+..+++|++|++++|.+..++ .+..+++|++|++++|.++. +..++++++|+
T Consensus 42 ~l~~L~~L~l~~n~i~-~l--~--~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DL--T--GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHTCCEEEEESSCCS-CC--T--TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hcCCccEEeccCCCcc-Ch--H--HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 3555666666554332 22 2 2455566666666666554443 45556666666666666554 55566666666
Q ss_pred eeeccCCcCcc-cChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccC
Q 044755 603 ILSFWGSVIVM-LPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHL 681 (1079)
Q Consensus 603 ~L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 681 (1079)
+|++++|.+.. .|..++.+++|++|++++|..+..++. +..+++|++|++++|.+. .+..+..+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~-------------~~~~l~~l 180 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH-------------DYRGIEDF 180 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC-------------CCTTGGGC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc-------------ChHHhccC
Confidence 66666665553 344556666666666666533555542 555666666666655443 01134455
Q ss_pred CCCcEEEEEeeC
Q 044755 682 PRLTTLEVHVKN 693 (1079)
Q Consensus 682 ~~L~~L~l~~~~ 693 (1079)
++|+.|+++++.
T Consensus 181 ~~L~~L~l~~N~ 192 (197)
T 4ezg_A 181 PKLNQLYAFSQT 192 (197)
T ss_dssp SSCCEEEECBC-
T ss_pred CCCCEEEeeCcc
Confidence 555555555544
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=1.1e-12 Score=135.46 Aligned_cols=148 Identities=23% Similarity=0.320 Sum_probs=116.4
Q ss_pred eEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccccc-CccccccccccEEeccc
Q 044755 508 YAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVE 586 (1079)
Q Consensus 508 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~ 586 (1079)
+.+...++.+..+|..+. ++++.|.+.++... .+ +...|.++++|++|+|++|.+..+ |..+..+++|++|+|++
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~-~i--~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK-VI--PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC-EE--CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC-Cc--CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 456667777777776554 67888888887543 34 555678888899999999988876 67788889999999999
Q ss_pred cccCC-c-ccccCCcccceeeccCCcCccc-ChhhccCCcccEEcccccccccccChhhhhcccccceeeccccccc
Q 044755 587 CMLDD-I-AIIGKLKNLEILSFWGSVIVML-PEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVE 660 (1079)
Q Consensus 587 ~~l~~-~-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 660 (1079)
|.++. | ..+..+.+|++|++++|.+..+ |..+..+++|++|++++| .++.++++.+..+++|++|++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88887 4 4467888899999988888877 456788888999999887 788888777888888888888887653
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=6.4e-13 Score=136.44 Aligned_cols=147 Identities=21% Similarity=0.336 Sum_probs=115.5
Q ss_pred eEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCcc-ccccccccEEeccc
Q 044755 508 YAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSS-IDLLVNLQTLCLVE 586 (1079)
Q Consensus 508 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~ 586 (1079)
+.+...++.+..+|... .++|+.|++.++... .+ +...|.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK-SL--PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-CC--CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC-cC--ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 34555566666666543 457888888887543 44 666678889999999999998888765 57889999999999
Q ss_pred cccCC-c-ccccCCcccceeeccCCcCcccChh-hccCCcccEEcccccccccccChhhhhcccccceeecccccc
Q 044755 587 CMLDD-I-AIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 587 ~~l~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 659 (1079)
|.++. + ..++++++|++|++++|.+..+|.. +..+++|++|++++| .+..+++..+.++++|++|++++|.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe
Confidence 98877 3 4578899999999999988888765 688899999999887 67888877778889999999888754
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.40 E-value=8.4e-13 Score=144.90 Aligned_cols=224 Identities=13% Similarity=0.016 Sum_probs=128.2
Q ss_pred cceEEEecCccccc--cCc--cccccccccEEeccccccCC--cccc--cCCcccceeeccCCcCccc-C----hhhccC
Q 044755 555 KLRVVDFTRMQLLL--LPS--SIDLLVNLQTLCLVECMLDD--IAII--GKLKNLEILSFWGSVIVML-P----EELGHL 621 (1079)
Q Consensus 555 ~Lr~L~L~~~~i~~--lp~--~i~~L~~L~~L~L~~~~l~~--~~~i--~~L~~L~~L~l~~~~l~~l-p----~~i~~L 621 (1079)
.++.|.+.++.+.. +.. ....+.+|++|++++|.+.. |..+ +++.+|++|++++|.+... | ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 45666777665532 111 12234568888888877665 4555 7777888888887766542 2 234567
Q ss_pred CcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcc--hhhhccCCCCcEEEEEeeCCCCCCc
Q 044755 622 TKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINAR--LDELMHLPRLTTLEVHVKNDNVLPE 699 (1079)
Q Consensus 622 ~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~ 699 (1079)
++|++|++++| .+..+++..++.+++|++|++++|.+. ..... ...+..+++|+.|+++.|.+..++.
T Consensus 145 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~---------~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 214 (310)
T 4glp_A 145 PGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGL---------GERGLMAALCPHKFPAIQNLALRNTGMETPTG 214 (310)
T ss_dssp SCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTC---------HHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH
T ss_pred cCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCc---------cchhhhHHHhhhcCCCCCEEECCCCCCCchHH
Confidence 77888888776 566676666777788888888777543 10001 1123466777777777776654443
Q ss_pred hhhhcccceeeeeeecCCcccceEeecccccccccccccc-ccccCCCceeeccCCCCcceecccCCcCCCCCCCCccce
Q 044755 700 GFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLD-REGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILES 778 (1079)
Q Consensus 700 ~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 778 (1079)
.... + +..+++|+.|+++++.........+. ...+++|+.|+++++.-. .+ +. ..+++|+.
T Consensus 215 ~~~~--l-------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~l-------p~-~~~~~L~~ 276 (310)
T 4glp_A 215 VCAA--L-------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QV-------PK-GLPAKLRV 276 (310)
T ss_dssp HHHH--H-------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SC-------CS-CCCSCCSC
T ss_pred HHHH--H-------HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-ch-------hh-hhcCCCCE
Confidence 2110 0 12245677777776654332221111 012367788887776421 11 11 22367788
Q ss_pred eeccccccccccccCcCCcCCCCCcceEEeecC
Q 044755 779 LNLYNLIKLERICQDRLSVQSFNELKTIRVELC 811 (1079)
Q Consensus 779 L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c 811 (1079)
|+++++ .+..++ . ...+++|+.|+++++
T Consensus 277 L~Ls~N-~l~~~~---~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 277 LDLSSN-RLNRAP---Q-PDELPEVDNLTLDGN 304 (310)
T ss_dssp EECCSC-CCCSCC---C-TTSCCCCSCEECSST
T ss_pred EECCCC-cCCCCc---h-hhhCCCccEEECcCC
Confidence 887775 344431 1 346777888877763
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=1.1e-12 Score=156.15 Aligned_cols=184 Identities=23% Similarity=0.233 Sum_probs=143.6
Q ss_pred EecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccccC
Q 044755 511 SLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLD 590 (1079)
Q Consensus 511 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~ 590 (1079)
.+..+.+..+.....+++|+.|.+.++... .+ + .+..+++|+.|+|++|.+..+|. ++.+++|++|+|++|.+.
T Consensus 27 ~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-~l--~--~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 27 NLKKKSVTDAVTQNELNSIDQIIANNSDIK-SV--Q--GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HTTCSCTTSEECHHHHTTCCCCBCTTCCCC-CC--T--TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred hccCCCcccccchhcCCCCCEEECcCCCCC-CC--h--HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC
Confidence 333344444444456788999999887543 23 2 36889999999999999998876 899999999999999998
Q ss_pred CcccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchh
Q 044755 591 DIAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSER 670 (1079)
Q Consensus 591 ~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 670 (1079)
.++.++.+++|++|+|++|.+..+| .+..+++|+.|+|++| .+..++ .++.+++|+.|++++|.+.
T Consensus 101 ~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~--~l~~l~~L~~L~Ls~N~l~---------- 166 (605)
T 1m9s_A 101 DLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDIT--VLSRLTKLDTLSLEDNQIS---------- 166 (605)
T ss_dssp CCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCG--GGGSCTTCSEEECCSSCCC----------
T ss_pred CChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCch--hhcccCCCCEEECcCCcCC----------
Confidence 8778999999999999999988875 5889999999999998 677773 3899999999999998764
Q ss_pred hhcchhhhccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeecccccc
Q 044755 671 INARLDELMHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDV 731 (1079)
Q Consensus 671 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~ 731 (1079)
.. ..+..+++|+.|+++.|.+..++.. ..+++|+.|+|+++...
T Consensus 167 --~~-~~l~~l~~L~~L~Ls~N~i~~l~~l--------------~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 167 --DI-VPLAGLTKLQNLYLSKNHISDLRAL--------------AGLKNLDVLELFSQECL 210 (605)
T ss_dssp --CC-GGGTTCTTCCEEECCSSCCCBCGGG--------------TTCTTCSEEECCSEEEE
T ss_pred --Cc-hhhccCCCCCEEECcCCCCCCChHH--------------ccCCCCCEEEccCCcCc
Confidence 11 1278889999999998887766432 23566777777766543
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.39 E-value=2.1e-12 Score=144.35 Aligned_cols=57 Identities=14% Similarity=0.199 Sum_probs=34.4
Q ss_pred cccCCCceeeccCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcceEEeec
Q 044755 741 EGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEL 810 (1079)
Q Consensus 741 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~ 810 (1079)
..+++|+.|+++++. +..+ +. ..|.+|+.|.+.++.+++.++ ....+++|+.+++.+
T Consensus 199 ~~l~~L~~LdLs~N~-l~~l-------p~-~~~~~L~~L~~l~~~~l~~lP----~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 199 HGASGPVILDISRTR-IHSL-------PS-YGLENLKKLRARSTYNLKKLP----TLEKLVALMEASLTY 255 (350)
T ss_dssp TTEECCSEEECTTSC-CCCC-------CS-SSCTTCCEEECTTCTTCCCCC----CTTTCCSCCEEECSC
T ss_pred ccCcccchhhcCCCC-cCcc-------Ch-hhhccchHhhhccCCCcCcCC----CchhCcChhhCcCCC
Confidence 345677777777663 2211 11 456677777777766666653 245677788777754
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=5.7e-13 Score=141.89 Aligned_cols=170 Identities=18% Similarity=0.165 Sum_probs=127.8
Q ss_pred cceeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEec
Q 044755 505 KECYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCL 584 (1079)
Q Consensus 505 ~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L 584 (1079)
.++..+.+..+.+..++....+++|+.|.+.++... .+ + .+..+++|++|++++|.+..+|. +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l--~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SL--A--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CC--T--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cc--h--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 334445566666666665557788888888876432 33 3 35788889999999998888877 888889999999
Q ss_pred cccccCCcccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCC
Q 044755 585 VECMLDDIAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDE 664 (1079)
Q Consensus 585 ~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 664 (1079)
++|.++....+.. .+|++|++++|.+..+| .+..+++|++|++++| .++.++ .++.+++|++|++++|.+.
T Consensus 93 ~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~--~l~~l~~L~~L~L~~N~i~---- 163 (263)
T 1xeu_A 93 NRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIV--MLGFLSKLEVLDLHGNEIT---- 163 (263)
T ss_dssp CSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCG--GGGGCTTCCEEECTTSCCC----
T ss_pred CCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCCh--HHccCCCCCEEECCCCcCc----
Confidence 9988887444444 88999999988888875 5888889999999887 677775 3788889999998888764
Q ss_pred CCCchhhhcchhhhccCCCCcEEEEEeeCCCCCC
Q 044755 665 GPNSERINARLDELMHLPRLTTLEVHVKNDNVLP 698 (1079)
Q Consensus 665 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 698 (1079)
....+..+++|+.|+++++.....|
T Consensus 164 ---------~~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 164 ---------NTGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp ---------BCTTSTTCCCCCEEEEEEEEEECCC
T ss_pred ---------chHHhccCCCCCEEeCCCCcccCCc
Confidence 1155677888888888887765554
No 111
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.37 E-value=2.7e-13 Score=154.07 Aligned_cols=139 Identities=14% Similarity=0.080 Sum_probs=87.0
Q ss_pred hhccCCcceEEEecCccccc-----cCccccccccccEEeccccccCC-----ccc-------ccCCcccceeeccCCcC
Q 044755 549 FFTGMRKLRVVDFTRMQLLL-----LPSSIDLLVNLQTLCLVECMLDD-----IAI-------IGKLKNLEILSFWGSVI 611 (1079)
Q Consensus 549 ~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~l~~-----~~~-------i~~L~~L~~L~l~~~~l 611 (1079)
.+..+++|++|+|++|.+.. ++..+..+++|++|+|++|.+.. |.. +.++++|++|++++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 34667777888888777654 34446677778888887765432 223 36778888888888776
Q ss_pred cc-----cChhhccCCcccEEcccccccccccChhhh----hcc---------cccceeecccccccccCCCCCchhhhc
Q 044755 612 VM-----LPEELGHLTKLRQLDLSNCFKLKVIAPNVI----SRL---------VRLEELYMSNCFVEWDDEGPNSERINA 673 (1079)
Q Consensus 612 ~~-----lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l----~~L---------~~L~~L~l~~~~~~~~~~~~~~~~~~~ 673 (1079)
.. +|..+.++++|++|++++| .+....+..+ ..+ ++|++|++++|.+. ......
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~-------~~~~~~ 178 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE-------NGSMKE 178 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT-------GGGHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC-------cHHHHH
Confidence 65 6667777888888888877 4443322222 233 67778887777653 011112
Q ss_pred chhhhccCCCCcEEEEEeeCCC
Q 044755 674 RLDELMHLPRLTTLEVHVKNDN 695 (1079)
Q Consensus 674 ~~~~l~~l~~L~~L~l~~~~~~ 695 (1079)
....+..+++|+.|+++.+.+.
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIR 200 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCC
T ss_pred HHHHHHhCCCcCEEECcCCCCC
Confidence 2245666777777777766543
No 112
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.34 E-value=1.9e-12 Score=115.99 Aligned_cols=79 Identities=11% Similarity=0.183 Sum_probs=69.6
Q ss_pred HHHHHHHhhhhhhhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHH
Q 044755 8 LVLEVVKCLAPPTERRVGYLRDYNANFENLRAEIEKLKEESTSIQRRVSEAERNG-ENIEEKVERWVVSVKKIIDEAAKF 86 (1079)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~-~~~~~~~~~Wl~~~~~~~~~~ed~ 86 (1079)
+++.+++++.+.+.+++.. +.|+++++++|+++|++|+++|.+|+.+. ...+++++.|+++||+++||+||+
T Consensus 2 ~v~~ll~KL~~ll~~E~~l-------~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~ 74 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKL-------HKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDV 74 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH-------HhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888877765 78999999999999999999999999863 246899999999999999999999
Q ss_pred HhhHHHh
Q 044755 87 IQDEETA 93 (1079)
Q Consensus 87 ~d~~~~~ 93 (1079)
+|+|.+.
T Consensus 75 iD~f~~~ 81 (115)
T 3qfl_A 75 VDKFLVQ 81 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=2.5e-12 Score=126.93 Aligned_cols=138 Identities=26% Similarity=0.260 Sum_probs=89.1
Q ss_pred CCcceEEEecCcccc--ccCccccccccccEEeccccccCCcccccCCcccceeeccCCcCcc-cChhhccCCcccEEcc
Q 044755 553 MRKLRVVDFTRMQLL--LLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSVIVM-LPEELGHLTKLRQLDL 629 (1079)
Q Consensus 553 l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l 629 (1079)
.+.|++|++++|.+. .+|..+..+++|++|++++|.++....++.+++|++|++++|.+.. +|..+.++++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 356777777777776 6676677777777777777776666666777777777777776666 5665666777777777
Q ss_pred cccccccccCh-hhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCc
Q 044755 630 SNCFKLKVIAP-NVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPE 699 (1079)
Q Consensus 630 ~~~~~l~~~~~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 699 (1079)
++| .++.++. ..++.+++|++|++++|.+... .......+..+++|+.|+++.+....+|.
T Consensus 103 s~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~--------~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 103 SGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNL--------NDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp BSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTS--------TTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred cCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcch--------HHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 776 5666542 3466777777777777655300 00011355666777777777666555543
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.31 E-value=7.7e-12 Score=146.87 Aligned_cols=183 Identities=19% Similarity=0.209 Sum_probs=126.7
Q ss_pred ceeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEecc
Q 044755 506 ECYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLV 585 (1079)
Q Consensus 506 ~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 585 (1079)
+++.+.+.++.+..+|..+ .++|+.|.+.+|... .+ | ..+++|++|++++|.++.+|. ++. +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~i--p----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SL--P----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CC--C----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-cc--c----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 5678888888887777755 378888888887544 45 5 346788888888888888887 655 88888888
Q ss_pred ccccCCcccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCC
Q 044755 586 ECMLDDIAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEG 665 (1079)
Q Consensus 586 ~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 665 (1079)
+|.++..+. .+.+|++|++++|.+..+|. .+++|++|++++| .++.+|. ++ ++|+.|++++|.+..
T Consensus 129 ~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~L~~---- 194 (571)
T 3cvr_A 129 NNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNLLES---- 194 (571)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCCSS----
T ss_pred CCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCCCCc----
Confidence 888877322 67888888888888888876 5788888888887 6777766 44 788888888886641
Q ss_pred CCchhhhcchhhh-ccCCCCcEEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeecccccc
Q 044755 666 PNSERINARLDEL-MHLPRLTTLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDV 731 (1079)
Q Consensus 666 ~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~ 731 (1079)
.......| ...+.|+.|++++|.+..+|..++ .+++|+.|+++++...
T Consensus 195 -----lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~-------------~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 195 -----LPAVPVRNHHSEETEIFFRCRENRITHIPENIL-------------SLDPTCTIILEDNPLS 243 (571)
T ss_dssp -----CCCCC--------CCEEEECCSSCCCCCCGGGG-------------GSCTTEEEECCSSSCC
T ss_pred -----hhhHHHhhhcccccceEEecCCCcceecCHHHh-------------cCCCCCEEEeeCCcCC
Confidence 00000011 112233888888887777776533 2456666666665543
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=6.1e-12 Score=129.96 Aligned_cols=128 Identities=16% Similarity=0.260 Sum_probs=85.8
Q ss_pred CcceEEEecCccccccCc-cccccccccEEeccccccCC--cccccCCcccceeeccCCcCcccChh-hccCCcccEEcc
Q 044755 554 RKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDL 629 (1079)
Q Consensus 554 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 629 (1079)
..|++|++++|.+..+|. .+..+++|++|+|++|.++. |..+.++.+|++|++++|.+..+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 567777777777776654 56777777777777777766 46677777777777777777777665 466777777777
Q ss_pred cccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeC
Q 044755 630 SNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKN 693 (1079)
Q Consensus 630 ~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 693 (1079)
++| .+..+++..+..+++|++|++++|.+. ......+..+++|+.|++++|.
T Consensus 112 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 112 NAN-KINCLRVDAFQDLHNLNLLSLYDNKLQ-----------TIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-----------CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCC-CCCEeCHHHcCCCCCCCEEECCCCcCC-----------EECHHHHhCCCCCCEEEeCCCC
Confidence 776 566666666777777777777776554 1112234455666666665543
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.30 E-value=4.5e-13 Score=152.27 Aligned_cols=238 Identities=16% Similarity=0.109 Sum_probs=125.8
Q ss_pred CCCcccEEEecCCCCcccc-cCCcchhccCCcceEEEecCccccc----cCccc-------cccccccEEeccccccCC-
Q 044755 525 ECLRLEFLHINPKDSFFEI-NNPCNFFTGMRKLRVVDFTRMQLLL----LPSSI-------DLLVNLQTLCLVECMLDD- 591 (1079)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~i~~----lp~~i-------~~L~~L~~L~L~~~~l~~- 591 (1079)
.+++|++|.+.++...... ......+..+++|++|+|++|.+.. +|..+ ..+++|++|+|++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 4566777777665432211 0001224567777777777764432 23333 566777777777777654
Q ss_pred -----cccccCCcccceeeccCCcCcc-----cChhhccC---------CcccEEccccccccc--ccCh--hhhhcccc
Q 044755 592 -----IAIIGKLKNLEILSFWGSVIVM-----LPEELGHL---------TKLRQLDLSNCFKLK--VIAP--NVISRLVR 648 (1079)
Q Consensus 592 -----~~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L---------~~L~~L~l~~~~~l~--~~~~--~~l~~L~~ 648 (1079)
+..+.++++|++|++++|.+.. ++..+..+ ++|++|++++| .+. .++. ..+..+++
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCC
Confidence 3456677777777777776542 23333344 67777777776 343 2221 23556677
Q ss_pred cceeecccccccccCCCCCchhhhcchh-hhccCCCCcEEEEEeeCCC-----CCCchhhhcccceeeeeeecCCcccce
Q 044755 649 LEELYMSNCFVEWDDEGPNSERINARLD-ELMHLPRLTTLEVHVKNDN-----VLPEGFFARKLERFKISKLQGIKDVEY 722 (1079)
Q Consensus 649 L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~L~~L~l~~~~~l~~L~~ 722 (1079)
|++|++++|.+. ......... .+..+++|+.|+++.|.+. .++.. +..+++|+.
T Consensus 189 L~~L~L~~n~l~-------~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~-------------l~~~~~L~~ 248 (386)
T 2ca6_A 189 LHTVKMVQNGIR-------PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-------------LKSWPNLRE 248 (386)
T ss_dssp CCEEECCSSCCC-------HHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-------------GGGCTTCCE
T ss_pred cCEEECcCCCCC-------HhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH-------------HccCCCcCE
Confidence 777777776543 001111223 5666777777777766652 22221 123556777
Q ss_pred Eeeccccccccc----cccccccccCCCceeeccCCCCcceecccCCcCCCC-CCCCccceeeccccc
Q 044755 723 LCLDKSQDVKNV----LFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLD-DAFPILESLNLYNLI 785 (1079)
Q Consensus 723 L~L~~~~~~~~~----~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~ 785 (1079)
|+|+++...... ...+....+++|+.|++++|.-.... ........ ..+++|+.|++.+++
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g--~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA--VRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH--HHHHHHHHHHHCTTCCEEECTTSB
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH--HHHHHHHHHhcCCCceEEEccCCc
Confidence 777766533221 11111123677888888777422100 00000000 236788888887763
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.29 E-value=1.1e-11 Score=132.01 Aligned_cols=147 Identities=23% Similarity=0.237 Sum_probs=128.3
Q ss_pred cccceeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEE
Q 044755 503 ALKECYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTL 582 (1079)
Q Consensus 503 ~~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 582 (1079)
....++.+.+.++.+..++....+++|+.|.+.++... .+ +. +.++++|++|++++|.++.+|.... .+|++|
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~-~~--~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-DL--SP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRL 111 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CC--GG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEE
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC-CC--hh--hccCCCCCEEECCCCccCCcCcccc--CcccEE
Confidence 35678999999999998886668999999999987654 33 33 7899999999999999999876544 999999
Q ss_pred eccccccCCcccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeeccccccc
Q 044755 583 CLVECMLDDIAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVE 660 (1079)
Q Consensus 583 ~L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 660 (1079)
++++|.++.+..++++++|++|++++|.+..+| .+..+++|++|++++| .+..+ ..+..+++|+.|++++|.+.
T Consensus 112 ~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS-CCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred EccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC-cCcch--HHhccCCCCCEEeCCCCccc
Confidence 999999999778999999999999999999986 6899999999999998 67777 34899999999999998765
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.29 E-value=1.2e-11 Score=138.67 Aligned_cols=148 Identities=18% Similarity=0.271 Sum_probs=88.9
Q ss_pred eEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhc-cCCcceEEEecCccccccCc-cccccccccEEecc
Q 044755 508 YAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFT-GMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLV 585 (1079)
Q Consensus 508 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~ 585 (1079)
+.+...++.+..+|..+ .+.++.|++.++... .+ +...|. ++.+|++|+|++|.+..+|. .+..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~-~l--~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLS-RL--RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCC-EE--CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCC-cc--ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 34555555565565533 234666666665432 23 444444 66667777777776666543 46666777777777
Q ss_pred ccccCC--cccccCCcccceeeccCCcCccc-ChhhccCCcccEEcccccccccccChhhh---hcccccceeecccccc
Q 044755 586 ECMLDD--IAIIGKLKNLEILSFWGSVIVML-PEELGHLTKLRQLDLSNCFKLKVIAPNVI---SRLVRLEELYMSNCFV 659 (1079)
Q Consensus 586 ~~~l~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l---~~L~~L~~L~l~~~~~ 659 (1079)
+|.++. +..+..+.+|++|+|++|.+..+ |..+..+++|++|++++| .+..+|...+ ..+++|+.|++++|.+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 776665 24466667777777777666665 345666677777777665 5666666544 4566677777766655
Q ss_pred c
Q 044755 660 E 660 (1079)
Q Consensus 660 ~ 660 (1079)
.
T Consensus 176 ~ 176 (361)
T 2xot_A 176 K 176 (361)
T ss_dssp C
T ss_pred C
Confidence 3
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=2e-12 Score=145.24 Aligned_cols=143 Identities=13% Similarity=0.145 Sum_probs=85.8
Q ss_pred chhccCCcceEEEecCccccccC-----ccccccc-cccEEeccccccCC--cccccCC-----cccceeeccCCcCccc
Q 044755 548 NFFTGMRKLRVVDFTRMQLLLLP-----SSIDLLV-NLQTLCLVECMLDD--IAIIGKL-----KNLEILSFWGSVIVML 614 (1079)
Q Consensus 548 ~~~~~l~~Lr~L~L~~~~i~~lp-----~~i~~L~-~L~~L~L~~~~l~~--~~~i~~L-----~~L~~L~l~~~~l~~l 614 (1079)
.++...++|++|++++|.+...+ ..+..++ +|++|+|++|.+.. +..+..+ .+|++|++++|.+...
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 34445555777777777777654 4456666 77777777777665 4445554 7777777777776654
Q ss_pred Chh-----hccC-CcccEEcccccccccccChhhhhc-----ccccceeecccccccccCCCCCchhhhcchhhhccCC-
Q 044755 615 PEE-----LGHL-TKLRQLDLSNCFKLKVIAPNVISR-----LVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLP- 682 (1079)
Q Consensus 615 p~~-----i~~L-~~L~~L~l~~~~~l~~~~~~~l~~-----L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~- 682 (1079)
+.. +..+ ++|++|++++| .++..+...++. .++|++|++++|.+.. .........+..++
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-------~~~~~l~~~l~~~~~ 167 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI-------KSSDELIQILAAIPA 167 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG-------SCHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH-------HHHHHHHHHHhcCCc
Confidence 432 3344 67777777776 466665544433 2477777777776541 01112334444444
Q ss_pred CCcEEEEEeeCCCCCC
Q 044755 683 RLTTLEVHVKNDNVLP 698 (1079)
Q Consensus 683 ~L~~L~l~~~~~~~~~ 698 (1079)
+|+.|+++++.+....
T Consensus 168 ~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 168 NVNSLNLRGNNLASKN 183 (362)
T ss_dssp TCCEEECTTSCGGGSC
T ss_pred cccEeeecCCCCchhh
Confidence 7777777766554433
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=8.1e-12 Score=140.06 Aligned_cols=136 Identities=23% Similarity=0.265 Sum_probs=70.5
Q ss_pred cceEEEecCccccccCcc-cc-ccccccEEeccccccCC--cccccCCcccceeeccCCcCcccCh-hhccCCcccEEcc
Q 044755 555 KLRVVDFTRMQLLLLPSS-ID-LLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIVMLPE-ELGHLTKLRQLDL 629 (1079)
Q Consensus 555 ~Lr~L~L~~~~i~~lp~~-i~-~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l 629 (1079)
.+++|+|++|.++.+|.. +. .+++|++|+|++|.++. +..+.++.+|++|+|++|.+..+|. .+..+++|++|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 355566666666555443 33 55666666666666555 2345566666666666665555544 2555666666666
Q ss_pred cccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCc
Q 044755 630 SNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPE 699 (1079)
Q Consensus 630 ~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 699 (1079)
++| .+..+++..+..+++|++|++++|.+..-. ...+..+..+++|+.|+++.|.+..++.
T Consensus 120 ~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 120 YNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFP--------VELIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp CSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCC--------GGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred CCC-cccEECHHHhCCcccCCEEECCCCcCCeeC--------HHHhcCcccCCcCCEEECCCCCCCccCH
Confidence 655 455555545556666666666655443000 0011112345556666666555555553
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.28 E-value=1.5e-11 Score=128.05 Aligned_cols=105 Identities=24% Similarity=0.370 Sum_probs=66.7
Q ss_pred CcceEEEecCcccccc-CccccccccccEEeccccccCC-c-ccccCCcccceeeccCCcCcccChh-hccCCcccEEcc
Q 044755 554 RKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVECMLDD-I-AIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDL 629 (1079)
Q Consensus 554 ~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 629 (1079)
.+|++|+|++|.+..+ |..+..+++|++|+|++|.+.. + ..+..+.+|++|++++|.+..+|.. +..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 5666677777766665 4456666677777777666655 2 3456666677777766666666544 456666666666
Q ss_pred cccccccccChhhhhcccccceeeccccccc
Q 044755 630 SNCFKLKVIAPNVISRLVRLEELYMSNCFVE 660 (1079)
Q Consensus 630 ~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 660 (1079)
++| .+..+|.. +..+++|++|++++|.+.
T Consensus 120 s~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 120 CCN-KLTELPRG-IERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CSS-CCCSCCTT-GGGCTTCSEEECCSSCCC
T ss_pred cCC-cccccCcc-cccCCCCCEEECCCCcCC
Confidence 665 56666554 566666666666666543
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.27 E-value=8.7e-12 Score=122.97 Aligned_cols=128 Identities=23% Similarity=0.225 Sum_probs=85.2
Q ss_pred CcccEEEecCCCCc-ccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccccCC--cccccCCcccce
Q 044755 527 LRLEFLHINPKDSF-FEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEI 603 (1079)
Q Consensus 527 ~~Lr~L~l~~~~~~-~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~ 603 (1079)
++|+.|.+.++... ..+ |. .+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. |..++++++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i--~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKI--EG-LTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBC--SS-CCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhH--HH-HHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 45566666655432 123 32 246677777777777777766 667777777777777777766 344455777777
Q ss_pred eeccCCcCcccC--hhhccCCcccEEcccccccccccCh---hhhhcccccceeecccccc
Q 044755 604 LSFWGSVIVMLP--EELGHLTKLRQLDLSNCFKLKVIAP---NVISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 604 L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~~~---~~l~~L~~L~~L~l~~~~~ 659 (1079)
|++++|.+..+| ..+..+++|++|++++| .+..+++ ..+..+++|++|++.+|..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 777777777765 56777777777777776 5666665 4567777777777776654
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=7.1e-12 Score=153.20 Aligned_cols=152 Identities=20% Similarity=0.203 Sum_probs=99.6
Q ss_pred cceeEEEecCCCCCCCCCc-cCCCcccEEEecCCCC---cccccCCcchhccCCcceEEEecCccccccCcccccccccc
Q 044755 505 KECYAISLRGCSIHELPEG-LECLRLEFLHINPKDS---FFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQ 580 (1079)
Q Consensus 505 ~~~~~l~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~---~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 580 (1079)
..++++.+..+.+...+.. .....|+.+.+..... ...+ +...|..+..|++|+|++|.+..+|..+..+++|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~--~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVM--PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceec--ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 4577788877777665432 2344444444433211 1123 56677899999999999999999999999999999
Q ss_pred EEeccccccCC-cccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccc
Q 044755 581 TLCLVECMLDD-IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 581 ~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 659 (1079)
+|+|++|.++. |..+++|.+|++|+|++|.+..+|..+++|++|++|+|++| .++.+|.. +++|++|++|++++|.+
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCCcc
Confidence 99999999988 78899999999999999999999999999999999999998 78888877 89999999999999876
Q ss_pred c
Q 044755 660 E 660 (1079)
Q Consensus 660 ~ 660 (1079)
.
T Consensus 329 ~ 329 (727)
T 4b8c_D 329 E 329 (727)
T ss_dssp C
T ss_pred C
Confidence 5
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=8.5e-12 Score=120.26 Aligned_cols=102 Identities=26% Similarity=0.327 Sum_probs=49.9
Q ss_pred ccCCcceEEEecCccccccCccccccccccEEeccccccCC--cccccCCcccceeeccCCcCcccC--hhhccCCcccE
Q 044755 551 TGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIVMLP--EELGHLTKLRQ 626 (1079)
Q Consensus 551 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~ 626 (1079)
..+++|++|++++|.++.+ ..++.+++|++|++++|.++. |..++++++|++|++++|.+..+| ..++.+++|++
T Consensus 39 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 4455555555555555444 444555555555555555444 233334555555555555554443 34455555555
Q ss_pred EcccccccccccCh---hhhhcccccceeec
Q 044755 627 LDLSNCFKLKVIAP---NVISRLVRLEELYM 654 (1079)
Q Consensus 627 L~l~~~~~l~~~~~---~~l~~L~~L~~L~l 654 (1079)
|++++| .+...++ ..++.+++|+.|++
T Consensus 118 L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 118 LDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 555554 3444443 33444555555543
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.26 E-value=1.8e-11 Score=126.42 Aligned_cols=148 Identities=11% Similarity=0.137 Sum_probs=114.6
Q ss_pred cEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCc--cccccccccEEeccccccCC--cccccCCcccceee
Q 044755 530 EFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPS--SIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILS 605 (1079)
Q Consensus 530 r~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~ 605 (1079)
+++++.++.. ..+ |..+ ...+++|++++|.++.++. .+..+++|++|+|++|.++. +..++++.+|++|+
T Consensus 14 ~~l~~s~n~l-~~i--P~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDCSNQKL-NKI--PEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TEEECCSSCC-SSC--CSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEeEeCCCCc-ccC--ccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 4677766543 344 5544 2356899999999988743 37899999999999999887 35789999999999
Q ss_pred ccCCcCcccChh-hccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCC
Q 044755 606 FWGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRL 684 (1079)
Q Consensus 606 l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 684 (1079)
+++|.+..+|.. +..+++|++|++++| .+..+++..+..+++|++|++++|.+. ...+..+..+++|
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L 155 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQIT-----------TVAPGAFDTLHSL 155 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCC-----------CBCTTTTTTCTTC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCC-----------EECHHHhcCCCCC
Confidence 999988888765 788999999999997 788887777888999999999988765 1224566778888
Q ss_pred cEEEEEeeCCC
Q 044755 685 TTLEVHVKNDN 695 (1079)
Q Consensus 685 ~~L~l~~~~~~ 695 (1079)
+.|++++|...
T Consensus 156 ~~L~L~~N~l~ 166 (220)
T 2v70_A 156 STLNLLANPFN 166 (220)
T ss_dssp CEEECCSCCEE
T ss_pred CEEEecCcCCc
Confidence 88888876543
No 126
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.25 E-value=1.7e-11 Score=125.69 Aligned_cols=147 Identities=21% Similarity=0.243 Sum_probs=123.7
Q ss_pred cccceeEEEecCCCCCCCCCc--cCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCcc-ccccccc
Q 044755 503 ALKECYAISLRGCSIHELPEG--LECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSS-IDLLVNL 579 (1079)
Q Consensus 503 ~~~~~~~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L 579 (1079)
....++.+.+.++.+..++.. ..+++|+.|++.++... .+ +...|..+++|++|++++|.+..+|.. ++.+++|
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SL--PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-cc--ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence 356899999999999888763 37999999999987543 45 677789999999999999999998765 6899999
Q ss_pred cEEeccccccCC-c-ccccCCcccceeeccCCcCcccChh-hccCCcccEEcccccccccccChhhhhcccccceeeccc
Q 044755 580 QTLCLVECMLDD-I-AIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 656 (1079)
Q Consensus 580 ~~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 656 (1079)
++|++++|.++. + ..++++.+|++|++++|.+..+|.. +..+++|++|++++|. + .+.+++|+.|+++.
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-~-------~~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-W-------DCTCPGIRYLSEWI 174 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-B-------CCCTTTTHHHHHHH
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC-e-------ecCCCCHHHHHHHH
Confidence 999999999988 4 4589999999999999999998876 7889999999999983 2 24566788888877
Q ss_pred cccc
Q 044755 657 CFVE 660 (1079)
Q Consensus 657 ~~~~ 660 (1079)
+.+.
T Consensus 175 n~~~ 178 (208)
T 2o6s_A 175 NKHS 178 (208)
T ss_dssp HHCT
T ss_pred HhCC
Confidence 6553
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=6.8e-12 Score=120.95 Aligned_cols=128 Identities=24% Similarity=0.266 Sum_probs=106.5
Q ss_pred cCCcceEEEecCcccc--ccCccccccccccEEeccccccCCcccccCCcccceeeccCCcCcc-cChhhccCCcccEEc
Q 044755 552 GMRKLRVVDFTRMQLL--LLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSVIVM-LPEELGHLTKLRQLD 628 (1079)
Q Consensus 552 ~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~ 628 (1079)
..++|+.|++++|.+. .+|..++.+++|++|++++|.++....++++++|++|++++|.+.. +|..+..+++|++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 4578999999999998 7899899999999999999999888889999999999999999988 777788899999999
Q ss_pred ccccccccccC-hhhhhcccccceeecccccccccCCCCCchhhh-cchhhhccCCCCcEEEE
Q 044755 629 LSNCFKLKVIA-PNVISRLVRLEELYMSNCFVEWDDEGPNSERIN-ARLDELMHLPRLTTLEV 689 (1079)
Q Consensus 629 l~~~~~l~~~~-~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l 689 (1079)
+++| .++.++ +..++.+++|++|++++|.+. ... .....+..+++|+.|++
T Consensus 95 ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~---------~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVT---------NLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGG---------GSTTHHHHHHHHCTTCCEETT
T ss_pred CCCC-cCCChHHHHHHhhCCCCCEEeCcCCccc---------chHHHHHHHHHHCCCcccccC
Confidence 9998 677764 245889999999999998765 111 11245777888887764
No 128
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.24 E-value=6.9e-12 Score=140.85 Aligned_cols=83 Identities=11% Similarity=0.153 Sum_probs=38.5
Q ss_pred hccCC-cceEEEecCcccccc-Ccccccc-----ccccEEeccccccCC--ccc----ccCC-cccceeeccCCcCcccC
Q 044755 550 FTGMR-KLRVVDFTRMQLLLL-PSSIDLL-----VNLQTLCLVECMLDD--IAI----IGKL-KNLEILSFWGSVIVMLP 615 (1079)
Q Consensus 550 ~~~l~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~L~~~~l~~--~~~----i~~L-~~L~~L~l~~~~l~~lp 615 (1079)
|.+++ +|++|+|++|.+... +..+..+ ++|++|+|++|.++. +.. +..+ ++|++|++++|.+...+
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 34444 555555555555443 3334333 555555555555443 222 2222 45555555555554443
Q ss_pred hh-----hcc-CCcccEEccccc
Q 044755 616 EE-----LGH-LTKLRQLDLSNC 632 (1079)
Q Consensus 616 ~~-----i~~-L~~L~~L~l~~~ 632 (1079)
.. +.. .++|++|++++|
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTS
T ss_pred HHHHHHHHHhCCCceeEEEccCC
Confidence 21 122 135555555554
No 129
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.24 E-value=5.7e-10 Score=126.56 Aligned_cols=283 Identities=13% Similarity=0.050 Sum_probs=168.8
Q ss_pred cccccHHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhc----CC--CCEEEEEEeCCcc-CHHHH
Q 044755 155 EAFESRLCALKSVQNALT----DVNVSIVGVYGMGGIGKTTLVKEVARQARED----KL--FDLVVFSEVSQTL-DIKKI 223 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~--F~~~~wv~~~~~~-~~~~~ 223 (1079)
..++||+++++++.+++. ....+.+.|+|++|+||||+|+.+++..... .. ....+|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 468899999999987775 3446789999999999999999999876422 11 3457888888777 88889
Q ss_pred HHHHHHHh-CCCcc--ccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc--cccc-cCCCCCCCCCcEEEEEecChhhhh
Q 044755 224 QQEIAEKL-GLVLE--EETGSRRASRLYERLKKEEKILIILDNIWKCVD--LEAV-GIPFGDDHKGCKLLLTARDRNVLF 297 (1079)
Q Consensus 224 ~~~i~~~l-~~~~~--~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--~~~l-~~~l~~~~~gs~iivTtR~~~v~~ 297 (1079)
+..++.++ +.... ..........+...+.. ++.+||+||++.... +... ...+.....+..||+||+......
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHh
Confidence 99988887 32211 12223445556666653 444999999986422 1111 111111115788999998753211
Q ss_pred ----h--cCCCceEeCCCCCHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHHcC---CCch-HHHHHHHHH--h---cC-
Q 044755 298 ----R--MGSQKNFSIDILNEEEAWRLFKLMADD-HVENRELQSTATEVAQACK---GLPI-ALTTIARAL--R---NK- 360 (1079)
Q Consensus 298 ----~--~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPl-ai~~~~~~l--~---~~- 360 (1079)
. ......+++++++.++..+++.+++.. .....-..+..+.|++.++ |.|. |+..+.... . ..
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i 258 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGII 258 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCC
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 1 111238999999999999999998631 1111111345677888887 8876 444443332 1 12
Q ss_pred ChhHHHHHHHHhcCCCcCCCCCCchhhhhhHHHhhccCChHHHHHHHHHhcccCCCcchhHHHH--HHHhhccccccCCH
Q 044755 361 SVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKFFMLCSLLGNSICTSYLFQ--CCMGLGILQKANKL 438 (1079)
Q Consensus 361 ~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cf~~~s~fp~~~~~~~li~--~w~aeg~i~~~~~~ 438 (1079)
+.+.+..+++... ...+..++..|+.+ -+..+..++. .. ...++.+ .-+++.+=....+
T Consensus 259 ~~~~v~~~~~~~~--------------~~~~~~~~~~l~~~-~~~~l~al~~-~~--~~~~~~~~~~~~~~~~g~~~~~- 319 (384)
T 2qby_B 259 RKEHVDKAIVDYE--------------QERLIEAVKALPFH-YKLALRSLIE-SE--DVMSAHKMYTDLCNKFKQKPLS- 319 (384)
T ss_dssp CHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHT-CC--BHHHHHHHHHHHHHHTTCCCCC-
T ss_pred CHHHHHHHHHHHh--------------cchHHHHHHcCCHH-HHHHHHHHHH-hc--ccChHHHHHHHHHHHcCCCCCC-
Confidence 5667777665531 23466777888876 3444444444 11 1011111 1112211001112
Q ss_pred HHHHHHHHHHHHHHHhhccccc
Q 044755 439 EDARNKLYALVHELRDSCLLLE 460 (1079)
Q Consensus 439 ~~~~~~~~~~~~~L~~~~l~~~ 460 (1079)
...+.++++.|...+++..
T Consensus 320 ---~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 320 ---YRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp ---HHHHHHHHHHHHHTTSEEE
T ss_pred ---HHHHHHHHHHHHhCCCEEE
Confidence 2334456888889999864
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=2.3e-11 Score=120.81 Aligned_cols=107 Identities=18% Similarity=0.214 Sum_probs=53.8
Q ss_pred ccCCcceEEEecCccccccCccccccc-cccEEeccccccCCcccccCCcccceeeccCCcCcccChhh-ccCCcccEEc
Q 044755 551 TGMRKLRVVDFTRMQLLLLPSSIDLLV-NLQTLCLVECMLDDIAIIGKLKNLEILSFWGSVIVMLPEEL-GHLTKLRQLD 628 (1079)
Q Consensus 551 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~ 628 (1079)
.++..|++|++++|.++.+|. +..+. +|++|++++|.++....++.+++|++|++++|.+..+|..+ ..+++|++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 344455555555555555432 33333 55555555555544444555555555555555555554433 5555555555
Q ss_pred ccccccccccCh-hhhhcccccceeecccccc
Q 044755 629 LSNCFKLKVIAP-NVISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 629 l~~~~~l~~~~~-~~l~~L~~L~~L~l~~~~~ 659 (1079)
+++| .++.+|. ..++.+++|++|++++|.+
T Consensus 95 L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 95 LTNN-SLVELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp CCSC-CCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred CCCC-cCCcchhhHhhhcCCCCCEEEecCCCC
Confidence 5554 4444443 1244555555555555543
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=1.2e-11 Score=122.92 Aligned_cols=132 Identities=18% Similarity=0.140 Sum_probs=93.3
Q ss_pred CccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccccCC-ccc-ccCCc
Q 044755 522 EGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAI-IGKLK 599 (1079)
Q Consensus 522 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~-i~~L~ 599 (1079)
....+++|+.|.+.++... .+ + .+....++|++|++++|.++.+ ..++.+++|++|++++|.++. |.. ++.++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i--~-~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VI--E-NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SC--C-CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCc-hh--H-HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 3445667777777776433 22 2 2323334788888888888777 567788888888888888777 433 47788
Q ss_pred ccceeeccCCcCcccCh--hhccCCcccEEcccccccccccChh---hhhcccccceeecccccc
Q 044755 600 NLEILSFWGSVIVMLPE--ELGHLTKLRQLDLSNCFKLKVIAPN---VISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 600 ~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~~~~---~l~~L~~L~~L~l~~~~~ 659 (1079)
+|++|++++|.+..+|. .+..+++|++|++++| .+..+|.. .++.+++|+.|+++++..
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 88888888888877776 6778888888888887 56666653 467788888888776644
No 132
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.19 E-value=1.1e-10 Score=137.23 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=131.0
Q ss_pred ccceeEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEe
Q 044755 504 LKECYAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLC 583 (1079)
Q Consensus 504 ~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~ 583 (1079)
...++.+.+++|.+..+| ..+++|+.|++.+|.... + |. +.+ +|++|++++|.++.+|. .+++|++|+
T Consensus 79 ~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-i--p~--l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-L--PE--LPA--SLKHLDVDNNQLTMLPE---LPALLEYIN 146 (571)
T ss_dssp CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-C--CC--CCT--TCCEEECCSSCCSCCCC---CCTTCCEEE
T ss_pred cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-c--ch--hhc--CCCEEECCCCcCCCCCC---cCccccEEe
Confidence 467999999999999888 457999999999986543 5 55 343 89999999999999988 689999999
Q ss_pred ccccccCCcccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhccccc-------ceeeccc
Q 044755 584 LVECMLDDIAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRL-------EELYMSN 656 (1079)
Q Consensus 584 L~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L-------~~L~l~~ 656 (1079)
|++|.++..+. .+++|++|++++|.+..+|. +. ++|++|++++| .++.+|. +.. +| +.|++++
T Consensus 147 Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~--~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 147 ADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN-LLESLPA--VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp CCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS-CCSSCCC--CC----------CCEEEECCS
T ss_pred CCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC-CCCchhh--HHH--hhhcccccceEEecCC
Confidence 99999988333 67899999999999999998 66 99999999998 7888877 444 66 9999999
Q ss_pred ccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCC
Q 044755 657 CFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNV 696 (1079)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 696 (1079)
|.+. ..+..+..+++|+.|++++|.+..
T Consensus 217 N~l~------------~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 217 NRIT------------HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SCCC------------CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred Ccce------------ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 8775 345566779999999999887654
No 133
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.18 E-value=3.2e-10 Score=128.88 Aligned_cols=286 Identities=15% Similarity=0.119 Sum_probs=168.2
Q ss_pred cccccHHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCC-CCEEEEEEeCCccCHHHHHHHHHH
Q 044755 155 EAFESRLCALKSVQNALT----DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKL-FDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
..|+||+.+++.+.+++. ......+.|+|++|+||||||+.+++....... -..++|+++....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999887 345678999999999999999999988753311 235788888777788888888888
Q ss_pred HhCCCccc--cchHHHHHHHHHHHHc-CCcEEEEEeCCCCcc------ccccccCCCCC-CCCCcEEEEEecChhhhhhc
Q 044755 230 KLGLVLEE--ETGSRRASRLYERLKK-EEKILIILDNIWKCV------DLEAVGIPFGD-DHKGCKLLLTARDRNVLFRM 299 (1079)
Q Consensus 230 ~l~~~~~~--~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~------~~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~ 299 (1079)
+++..... ....+....+.+.+.. +++.+||+|+++... .+..+...+.. ...+..+|+||+.......+
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 77654322 1223334555555553 458999999997642 11122111110 23356778888866433221
Q ss_pred C-------CCceEeCCCCCHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHHcC---CCchHH-HHHHHHHh-----c--C
Q 044755 300 G-------SQKNFSIDILNEEEAWRLFKLMADD-HVENRELQSTATEVAQACK---GLPIAL-TTIARALR-----N--K 360 (1079)
Q Consensus 300 ~-------~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPlai-~~~~~~l~-----~--~ 360 (1079)
. ....+++++++.++.++++.+.+.. .....-..++.+.|++.++ |.|..+ .++..... + .
T Consensus 180 ~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~ 259 (386)
T 2qby_A 180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTK 259 (386)
T ss_dssp TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 1 1258999999999999999987631 1111222455677777777 998843 33332221 1 1
Q ss_pred -ChhHHHHHHHHhcCCCcCCCCCCchhhhhhHHHhhccCChHHHHHHHHHhcc-c--C-CCcchhHHHHHH--Hhhcc-c
Q 044755 361 -SVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKFFMLCSL-L--G-NSICTSYLFQCC--MGLGI-L 432 (1079)
Q Consensus 361 -~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cf~~~s~-f--p-~~~~~~~li~~w--~aeg~-i 432 (1079)
+.+.++.+++.. ....+.-.+..+|.+ .+..+..++. + . ..+...++.+.. +++.+ +
T Consensus 260 i~~~~v~~a~~~~--------------~~~~~~~~~~~l~~~-~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~ 324 (386)
T 2qby_A 260 VKEEYVYMAKEEI--------------ERDRVRDIILTLPFH-SKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGV 324 (386)
T ss_dssp CCHHHHHHHHHHH--------------HHHHHHHHHHTSCHH-HHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHH--------------hhchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC
Confidence 445555555442 122455667788875 3444433332 1 1 223333333322 11111 1
Q ss_pred cccCCHHHHHHHHHHHHHHHHhhccccc
Q 044755 433 QKANKLEDARNKLYALVHELRDSCLLLE 460 (1079)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 460 (1079)
. ..+ ...+..+++.|...+++..
T Consensus 325 ~-~~~----~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 325 E-AVT----QRRVSDIINELDMVGILTA 347 (386)
T ss_dssp C-CCC----HHHHHHHHHHHHHHTSEEE
T ss_pred C-CCC----HHHHHHHHHHHHhCCCEEE
Confidence 1 111 1234455788888888864
No 134
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.18 E-value=1.5e-09 Score=123.33 Aligned_cols=286 Identities=14% Similarity=0.129 Sum_probs=171.4
Q ss_pred cccccHHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhc----CCCCEEEEEEeCCccCHHHHHHH
Q 044755 155 EAFESRLCALKSVQNALT----DVNVSIVGVYGMGGIGKTTLVKEVARQARED----KLFDLVVFSEVSQTLDIKKIQQE 226 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~ 226 (1079)
..++||+.+++++.+++. ....+.+.|+|++|+||||+|+.+++..... ..-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 468999999999999885 3456789999999999999999999876432 11134688898888899999999
Q ss_pred HHHHhCCCcccc--chHHHHHHHHHHHHc-CCcEEEEEeCCCCcccc----ccc---cCCCCCC--CCCcEEEEEecChh
Q 044755 227 IAEKLGLVLEEE--TGSRRASRLYERLKK-EEKILIILDNIWKCVDL----EAV---GIPFGDD--HKGCKLLLTARDRN 294 (1079)
Q Consensus 227 i~~~l~~~~~~~--~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~~----~~l---~~~l~~~--~~gs~iivTtR~~~ 294 (1079)
++.+++...... ...+....+...+.. +++.+||+||++..... +.+ ....... ..+..+|.||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 999997643321 233334555556643 56899999999875321 212 1111111 34567888887653
Q ss_pred hh--------hhcCCCceEeCCCCCHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHHcC---CCch-HHHHHHHHHh---
Q 044755 295 VL--------FRMGSQKNFSIDILNEEEAWRLFKLMADD-HVENRELQSTATEVAQACK---GLPI-ALTTIARALR--- 358 (1079)
Q Consensus 295 v~--------~~~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPl-ai~~~~~~l~--- 358 (1079)
.. ..+. ...+.+++++.++..+++.+.+.. .....-..++.+.|++.++ |.|- ++.++.....
T Consensus 179 ~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 179 FVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAE 257 (387)
T ss_dssp TSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 21 1111 247899999999999999988631 0011111235677888887 9993 3333332221
Q ss_pred --c--C-ChhHHHHHHHHhcCCCcCCCCCCchhhhhhHHHhhccCChHHHHHHHHHhc-ccC--CCcchhHHHHHHH--h
Q 044755 359 --N--K-SVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKFFMLCS-LLG--NSICTSYLFQCCM--G 428 (1079)
Q Consensus 359 --~--~-~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cf~~~s-~fp--~~~~~~~li~~w~--a 428 (1079)
+ . +.+.+..+++... ...+.-++..|+.+ .+..+...+ ++. ..+....+.+... +
T Consensus 258 ~~~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 258 RRREERVRREHVYSARAEIE--------------RDRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HTTCSCBCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HcCCCCcCHHHHHHHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 1 1 4556666655431 12455677889986 344443333 332 2344444444331 1
Q ss_pred hccccccCCHHHHHHHHHHHHHHHHhhccccc
Q 044755 429 LGILQKANKLEDARNKLYALVHELRDSCLLLE 460 (1079)
Q Consensus 429 eg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 460 (1079)
+..-....+ ...+.++++.|...+++..
T Consensus 323 ~~~~~~~~~----~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 323 STLGLEHVT----LRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHTTCCCCC----HHHHHHHHHHHHHTTSEEE
T ss_pred HhcCCCCCC----HHHHHHHHHHHHhCCCeEE
Confidence 111001111 2334456788888888864
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=7.6e-11 Score=118.83 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=62.5
Q ss_pred cceEEEecCccccccCcc--ccccccccEEeccccccCC--cccccCCcccceeeccCCcCcccChh-hccCCcccEEcc
Q 044755 555 KLRVVDFTRMQLLLLPSS--IDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDL 629 (1079)
Q Consensus 555 ~Lr~L~L~~~~i~~lp~~--i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 629 (1079)
.|++|++++|.+..+|.. ++.+++|++|+|++|.++. |..++++.+|++|++++|.+..+|.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 556666666666655542 5666666666666666555 35566666666666666666655443 556666666666
Q ss_pred cccccccccChhhhhcccccceeecccccc
Q 044755 630 SNCFKLKVIAPNVISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 630 ~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 659 (1079)
++| .+..+++..+..+++|++|++++|.+
T Consensus 110 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 YDN-QISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCC-cCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 665 45555555566666666666666544
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.16 E-value=1.1e-10 Score=117.43 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=85.1
Q ss_pred CcceEEEecCccccccCccccccccccEEeccccccCC--cccccCCcccceeeccCCcCcccCh-hhccCCcccEEccc
Q 044755 554 RKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIVMLPE-ELGHLTKLRQLDLS 630 (1079)
Q Consensus 554 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~ 630 (1079)
+.|++|++++|.++.+|..+..+++|++|+|++|.++. +..+.++.+|++|++++|.+..+|. .+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 46788888888888888888888888888888888877 3568888888888888888887765 47888888888888
Q ss_pred ccccccccChhhhhcccccceeeccccccc
Q 044755 631 NCFKLKVIAPNVISRLVRLEELYMSNCFVE 660 (1079)
Q Consensus 631 ~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 660 (1079)
+| .+..++++.+..+++|+.|++++|.+.
T Consensus 111 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 87 677888777788888888888877553
No 137
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.16 E-value=2.5e-09 Score=121.52 Aligned_cols=305 Identities=13% Similarity=0.130 Sum_probs=182.1
Q ss_pred cccccHHHHHHHHHHHhcC----CCce--EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHH
Q 044755 155 EAFESRLCALKSVQNALTD----VNVS--IVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIA 228 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 228 (1079)
..++||+.+++++.+++.. .... .+.|+|++|+||||+|+.+++...... -..++|++++...+...++..++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 4688999999999988863 3334 899999999999999999998875321 13578888888888899999999
Q ss_pred HHhCCCccc--cchHHHHHHHHHHHHc-CCcEEEEEeCCCCc--cccccccCCCCC-CC---CCcEEEEEecChhhhhhc
Q 044755 229 EKLGLVLEE--ETGSRRASRLYERLKK-EEKILIILDNIWKC--VDLEAVGIPFGD-DH---KGCKLLLTARDRNVLFRM 299 (1079)
Q Consensus 229 ~~l~~~~~~--~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~--~~~~~l~~~l~~-~~---~gs~iivTtR~~~v~~~~ 299 (1079)
..++..... .........+...+.. +++.+||+||++.. .....+...+.. .. .+..||++|+.......+
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 988764322 1223334444444432 56899999999774 222223222211 11 367788888876443322
Q ss_pred C-------CCceEeCCCCCHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHHc---------CCCchHHHHHHHH-Hh---
Q 044755 300 G-------SQKNFSIDILNEEEAWRLFKLMADD-HVENRELQSTATEVAQAC---------KGLPIALTTIARA-LR--- 358 (1079)
Q Consensus 300 ~-------~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~---------~glPlai~~~~~~-l~--- 358 (1079)
. ....+.+.+++.++..+++...+.. .....-..+..+.|++.+ +|.|-.+..+... ..
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 1 1236999999999999999988732 111122246688899999 7887544333222 21
Q ss_pred --cC---ChhHHHHHHHHhcCCCcCCCCCCchhhhhhHHHhhccCChHHHHHHHHHhcccC---C--CcchhHHHHHHHh
Q 044755 359 --NK---SVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKFFMLCSLLG---N--SICTSYLFQCCMG 428 (1079)
Q Consensus 359 --~~---~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cf~~~s~fp---~--~~~~~~li~~w~a 428 (1079)
+. +.+....+..... ...+.-.+..|+.+ .+.++..++.+. . .+....+...+-.
T Consensus 256 ~~~~~~i~~~~v~~~~~~~~--------------~~~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 256 QNGRKHIAPEDVRKSSKEVL--------------FGISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HTTCSSCCHHHHHHHHHHHS--------------CCCCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HhCCCCcCHHHHHHHHHHHh--------------hhhHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 11 2233333333321 11234456678876 566665555443 1 3444455444422
Q ss_pred ----hccccccCCHHHHHHHHHHHHHHHHhhccccccCC------CCc-------EeehHHHHHHHHHHh
Q 044755 429 ----LGILQKANKLEDARNKLYALVHELRDSCLLLEGDS------NQQ-------LSMHDVIRDVAISIA 481 (1079)
Q Consensus 429 ----eg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~------~~~-------~~~Hdlv~~~~~~~~ 481 (1079)
.|... -+ ...+..++++|...+++..... .++ +..|+++.++...+.
T Consensus 321 ~~~~~~~~~--~~----~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~ 384 (389)
T 1fnn_A 321 VCEEYGERP--RV----HSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLI 384 (389)
T ss_dssp HHHHTTCCC--CC----HHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHcCCCC--CC----HHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHH
Confidence 12111 11 2334566889999999975321 121 235677766655544
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.13 E-value=1.2e-10 Score=117.39 Aligned_cols=124 Identities=21% Similarity=0.249 Sum_probs=106.0
Q ss_pred eEEEecCccccccCccccccccccEEeccccccCC-cccccCCcccceeeccCCcCcccCh-hhccCCcccEEccccccc
Q 044755 557 RVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSVIVMLPE-ELGHLTKLRQLDLSNCFK 634 (1079)
Q Consensus 557 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~ 634 (1079)
++++++++.++.+|..+. .+|++|+|++|.++. |..+.++.+|++|++++|.+..++. .+..+++|++|++++| .
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-R 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-c
Confidence 689999999999998764 689999999999988 7899999999999999999999865 5899999999999998 7
Q ss_pred ccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCC
Q 044755 635 LKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKND 694 (1079)
Q Consensus 635 l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 694 (1079)
++.+++..+..+++|++|++++|.+. ......+..+++|+.|++++|..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDIS-----------VVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCC-----------BCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCC-----------eeChhhhhcCccccEEEeCCCCe
Confidence 99998888999999999999998765 11223466778888888877654
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.12 E-value=1.9e-10 Score=115.96 Aligned_cols=123 Identities=21% Similarity=0.305 Sum_probs=105.4
Q ss_pred eEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCcccccc-CccccccccccEEeccc
Q 044755 508 YAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVE 586 (1079)
Q Consensus 508 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~ 586 (1079)
+.+.+.++.+..+|..+. .+++.|.+.++...... +..+|..+++|++|+|++|.++.+ |..+..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRIS--SDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBC--CSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccC--CccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 578888888888887553 38999999998654322 334689999999999999999987 77899999999999999
Q ss_pred cccCC--cccccCCcccceeeccCCcCccc-ChhhccCCcccEEcccccc
Q 044755 587 CMLDD--IAIIGKLKNLEILSFWGSVIVML-PEELGHLTKLRQLDLSNCF 633 (1079)
Q Consensus 587 ~~l~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 633 (1079)
|.++. +..++.+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 99988 45689999999999999999877 6779999999999999983
No 140
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.12 E-value=6.6e-10 Score=117.34 Aligned_cols=199 Identities=13% Similarity=0.151 Sum_probs=119.2
Q ss_pred cCCccccccHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVN-VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
+.....++||+..++.+..++.... .+.+.|+|++|+||||+|+.+++.......+.. ..+... .. ...+..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~~---~~-~~~~~~ 91 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC---DN-CREIEQ 91 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSCS---HH-HHHHHT
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCccc---HH-HHHHhc
Confidence 3445578999999999999987543 358899999999999999999987753221100 000000 00 000100
Q ss_pred HhCCC-----ccccchHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEEEecChhhhh-
Q 044755 230 KLGLV-----LEEETGSRRASRLYERLK----KEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLTARDRNVLF- 297 (1079)
Q Consensus 230 ~l~~~-----~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v~~- 297 (1079)
..... ............+.+.+. .+++.+||+||++.. ..++.+...+.....+..+|+||+......
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp TCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred cCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCH
Confidence 00000 000011111222222221 246899999999763 334444333333345788899887654221
Q ss_pred h-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 044755 298 R-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIARAL 357 (1079)
Q Consensus 298 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 357 (1079)
. ......+++++++.++..+++.+.+..... .-..+..+.|++.|+|.|..+..+...+
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 233468999999999999999988732111 1123567889999999999888776544
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.11 E-value=4e-11 Score=146.51 Aligned_cols=130 Identities=22% Similarity=0.264 Sum_probs=109.2
Q ss_pred CCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccccCC-cccccCCcccce
Q 044755 525 ECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEI 603 (1079)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~ 603 (1079)
.+++|+.|++.++... .+ |..++ ++++|++|+|++|.++.+|..|+.|++|++|+|++|.++. |..+++|.+|++
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l--~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NI--SANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp CCCCCCEEECTTSCCS-CC--CGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred cCCCCcEEECCCCCCC-CC--Chhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 6788999999987654 55 66665 8999999999999999999999999999999999999988 889999999999
Q ss_pred eeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccc-cceeecccccc
Q 044755 604 LSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVR-LEELYMSNCFV 659 (1079)
Q Consensus 604 L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~-L~~L~l~~~~~ 659 (1079)
|+|++|.+..+|..|++|++|++|+|++| .+...++..+..+.. +..|++.+|.+
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGN-PLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTTS-CCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCCC-ccCCCChHHHhhcchhhhHHhhccCcc
Confidence 99999999999999999999999999998 677666665654422 22355666544
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.09 E-value=1.7e-10 Score=136.29 Aligned_cols=105 Identities=19% Similarity=0.220 Sum_probs=57.8
Q ss_pred ccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEeccccccCCcccccCCcccceeeccC
Q 044755 529 LEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWG 608 (1079)
Q Consensus 529 Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~l~~ 608 (1079)
|+.|.+.++... .+ |. +..+++|++|+|++|.++.+|..++.+++|++|+|++|.++.++.+++|++|++|++++
T Consensus 443 L~~L~Ls~n~l~-~l--p~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLT-VL--CH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCS-SC--CC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCC-CC--cC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCC
Confidence 555555554332 23 32 45555566666666655555555555666666666665555522555555566666655
Q ss_pred CcCccc--ChhhccCCcccEEcccccccccccC
Q 044755 609 SVIVML--PEELGHLTKLRQLDLSNCFKLKVIA 639 (1079)
Q Consensus 609 ~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~~ 639 (1079)
|.+..+ |..++.+++|++|++++| .+...|
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~ 549 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEE 549 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCc
Confidence 555555 555555555555555555 344443
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.09 E-value=1e-11 Score=126.11 Aligned_cols=109 Identities=19% Similarity=0.227 Sum_probs=82.9
Q ss_pred hhccCCcceEEEecCccccccCccccccccccEEeccccccCC-cccccCCcccceeeccCCcCcccChhhccCCcccEE
Q 044755 549 FFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQL 627 (1079)
Q Consensus 549 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 627 (1079)
.+..+++|++|++++|.+..+| .+..+++|++|++++|.++. |..++.+++|++|++++|.+..+| .+..+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 4577888888888888888877 77888888888888888777 566667788888888888777776 57778888888
Q ss_pred cccccccccccCh-hhhhcccccceeeccccccc
Q 044755 628 DLSNCFKLKVIAP-NVISRLVRLEELYMSNCFVE 660 (1079)
Q Consensus 628 ~l~~~~~l~~~~~-~~l~~L~~L~~L~l~~~~~~ 660 (1079)
++++| .+..++. ..+..+++|++|++++|.+.
T Consensus 121 ~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 121 YMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred ECCCC-cCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 88876 5666554 34777888888888777553
No 144
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.08 E-value=1.3e-09 Score=113.18 Aligned_cols=189 Identities=12% Similarity=0.088 Sum_probs=120.2
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEK 230 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 230 (1079)
+.....++||+..++.+.+++.....+.+.|+|++|+|||++|+.+++.......-...+.++.+.......+...+...
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEF 92 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHH
Confidence 34455788999999999999987666569999999999999999999876422111234555555544443333222211
Q ss_pred hCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEEEecChhhhh-h-cCCCceEe
Q 044755 231 LGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLLTARDRNVLF-R-MGSQKNFS 306 (1079)
Q Consensus 231 l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~v~~-~-~~~~~~~~ 306 (1079)
.... ....+++.+||+||++... ..+.+...+.....+.++|+||+...... . ......++
T Consensus 93 ~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 93 ARTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp HTSC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred hccc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceee
Confidence 1100 0012578999999998752 23333322323345678899888653211 1 22234899
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHHH
Q 044755 307 IDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIAR 355 (1079)
Q Consensus 307 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 355 (1079)
+.+++.++..+++.+.+...... --.+..+.|++.++|.|..+..+..
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999887321111 1235678899999999986554433
No 145
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.03 E-value=5.9e-10 Score=131.78 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=102.1
Q ss_pred cceEEEecCccccccCccccccccccEEeccccccCC-cccccCCcccceeeccCCcCcccChhhccCCcccEEcccccc
Q 044755 555 KLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCF 633 (1079)
Q Consensus 555 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~ 633 (1079)
.|++|+|++|.++.+|. ++.+++|++|+|++|.++. |..+++|++|++|++++|.+..+| .++++++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N- 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN- 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-
Confidence 48899999999999987 9999999999999999988 889999999999999999999998 8999999999999998
Q ss_pred cccccC-hhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEE
Q 044755 634 KLKVIA-PNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLE 688 (1079)
Q Consensus 634 ~l~~~~-~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 688 (1079)
.++.++ +..++.|++|+.|++++|.+.... ......+..+++|+.|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~--------~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE--------GIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSS--------SCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCc--------cHHHHHHHHCcccCccC
Confidence 788884 555899999999999998775111 11122334578888875
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=6.8e-10 Score=109.56 Aligned_cols=101 Identities=27% Similarity=0.409 Sum_probs=79.5
Q ss_pred eEEEecCccccccCccccccccccEEeccccccCC--cccccCCcccceeeccCCcCcccChh-hccCCcccEEcccccc
Q 044755 557 RVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDLSNCF 633 (1079)
Q Consensus 557 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 633 (1079)
+.++++++.+..+|..+. .+|++|+|++|.++. |..++++++|++|++++|.+..+|.. +.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N- 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN- 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-
Confidence 577888888888887764 788888888888777 46678888888888888888888766 477888888888887
Q ss_pred cccccChhhhhcccccceeeccccccc
Q 044755 634 KLKVIAPNVISRLVRLEELYMSNCFVE 660 (1079)
Q Consensus 634 ~l~~~~~~~l~~L~~L~~L~l~~~~~~ 660 (1079)
.++.+|++.+..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 677787776778888888888877654
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.00 E-value=9.9e-10 Score=109.14 Aligned_cols=105 Identities=24% Similarity=0.403 Sum_probs=74.2
Q ss_pred CcceEEEecCccccccCcc-ccccccccEEeccccccCC-c-ccccCCcccceeeccCCcCcccChh-hccCCcccEEcc
Q 044755 554 RKLRVVDFTRMQLLLLPSS-IDLLVNLQTLCLVECMLDD-I-AIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDL 629 (1079)
Q Consensus 554 ~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 629 (1079)
+.|++|++++|.+..+|.. ++.+++|++|++++|.++. + ..++.+.+|++|++++|.+..+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 5677777777777776554 5677777777777777766 3 3457777777777777777777654 567777777777
Q ss_pred cccccccccChhhhhcccccceeecccccc
Q 044755 630 SNCFKLKVIAPNVISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 630 ~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 659 (1079)
++| .++.+|+..+..+++|++|++++|.+
T Consensus 108 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 108 DTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 776 66677766566677777777776654
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.99 E-value=1.9e-09 Score=107.07 Aligned_cols=125 Identities=21% Similarity=0.319 Sum_probs=105.1
Q ss_pred eEEEecCCCCCCCCCccCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCcc-ccccccccEEeccc
Q 044755 508 YAISLRGCSIHELPEGLECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSS-IDLLVNLQTLCLVE 586 (1079)
Q Consensus 508 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~ 586 (1079)
+.+.+.++.+..+|... .++|+.|.+.++... .+ +...|.++++|++|++++|.++.+|.. ++.+++|++|++++
T Consensus 10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SL--PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC-CC--CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCccCCCCC-CCCCcEEEeCCCccc-Ee--CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 56777778887777544 378999999987643 45 667789999999999999999998765 68999999999999
Q ss_pred cccCC-c-ccccCCcccceeeccCCcCcccChh-hccCCcccEEcccccccccc
Q 044755 587 CMLDD-I-AIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKV 637 (1079)
Q Consensus 587 ~~l~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~ 637 (1079)
|.++. + ..++++.+|++|++++|.+..+|.. +..+++|++|++++| .+..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-PWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC-Ceec
Confidence 99988 4 4578999999999999999999876 578999999999998 4443
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.99 E-value=8.3e-10 Score=108.57 Aligned_cols=102 Identities=25% Similarity=0.357 Sum_probs=84.8
Q ss_pred ceEEEecCccccccCccccccccccEEeccccccCC--cccccCCcccceeeccCCcCcccChh-hccCCcccEEccccc
Q 044755 556 LRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDLSNC 632 (1079)
Q Consensus 556 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 632 (1079)
.++++++++.++.+|..+. .+|++|+|++|.++. +..++++.+|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 5688888888888888764 788899999998877 56688889999999999988888775 578899999999887
Q ss_pred ccccccChhhhhcccccceeeccccccc
Q 044755 633 FKLKVIAPNVISRLVRLEELYMSNCFVE 660 (1079)
Q Consensus 633 ~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 660 (1079)
.++.++++.+.++++|++|++++|.+.
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 788888877888888899888887654
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.95 E-value=4e-11 Score=121.72 Aligned_cols=140 Identities=23% Similarity=0.262 Sum_probs=111.4
Q ss_pred eEEEecCC--CCCCCCCc-cCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCccccccccccEEec
Q 044755 508 YAISLRGC--SIHELPEG-LECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCL 584 (1079)
Q Consensus 508 ~~l~l~~~--~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L 584 (1079)
+...+.+. .+..++.. ..+++|+.|++.++... .+ | .+.++++|++|++++|.+..+|..+..+++|++|++
T Consensus 26 ~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l--~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI--S--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp SEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CC--C--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred heeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-cc--c--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 34444432 44445433 36889999999887533 34 5 568899999999999999999998899999999999
Q ss_pred cccccCCcccccCCcccceeeccCCcCcccCh--hhccCCcccEEcccccccccccCh----------hhhhccccccee
Q 044755 585 VECMLDDIAIIGKLKNLEILSFWGSVIVMLPE--ELGHLTKLRQLDLSNCFKLKVIAP----------NVISRLVRLEEL 652 (1079)
Q Consensus 585 ~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~~~----------~~l~~L~~L~~L 652 (1079)
++|.++.++.++++++|++|++++|.+..+|. .+..+++|++|++++| .+...++ ..+..+++|+.|
T Consensus 101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEE
Confidence 99999995589999999999999999998765 6899999999999998 4544322 236778888888
Q ss_pred e
Q 044755 653 Y 653 (1079)
Q Consensus 653 ~ 653 (1079)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 7
No 151
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=8.2e-09 Score=113.87 Aligned_cols=191 Identities=14% Similarity=0.102 Sum_probs=118.9
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEK 230 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 230 (1079)
|.....++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++...........++++.+.......+ ++++..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 95 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKH 95 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHH
Confidence 4455678999999999999998776666999999999999999999988632211112455555443333222 222222
Q ss_pred hCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEEEecChhhh-hh-cCCCceEe
Q 044755 231 LGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLTARDRNVL-FR-MGSQKNFS 306 (1079)
Q Consensus 231 l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v~-~~-~~~~~~~~ 306 (1079)
+..... .+..+++.++|+||++.. ..++.+...+.....++++|+||+...-. .. ......++
T Consensus 96 ~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 96 FAQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp HHHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred HHhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 110000 000246899999999874 23333333332234567888888764321 11 23345899
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCch-HHHHHHHH
Q 044755 307 IDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPI-ALTTIARA 356 (1079)
Q Consensus 307 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~~~ 356 (1079)
+.+++.++..+++.+.+...... --.+.++.|++.++|.|. |+..+...
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999877321111 123567889999999995 44544443
No 152
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.7e-07 Score=100.18 Aligned_cols=166 Identities=7% Similarity=0.034 Sum_probs=106.9
Q ss_pred cccHHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCC---C-C-EEEEEEeCCccCHHHHHHHH
Q 044755 157 FESRLCALKSVQNALT----DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKL---F-D-LVVFSEVSQTLDIKKIQQEI 227 (1079)
Q Consensus 157 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~-~~~wv~~~~~~~~~~~~~~i 227 (1079)
..||+++.+++...|. .+..+.+.|+|++|+|||++|+.|+++...... . . ..++|++....+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 5699999999987775 567788999999999999999999998753221 1 1 36788888888899999999
Q ss_pred HHHhCCCcc-ccchHHHHHHHHHHH--HcCCcEEEEEeCCCCccccccccCCC--C-CCCCCcEEEEEecChhh------
Q 044755 228 AEKLGLVLE-EETGSRRASRLYERL--KKEEKILIILDNIWKCVDLEAVGIPF--G-DDHKGCKLLLTARDRNV------ 295 (1079)
Q Consensus 228 ~~~l~~~~~-~~~~~~~~~~l~~~l--~~~~~~LlvlDdv~~~~~~~~l~~~l--~-~~~~gs~iivTtR~~~v------ 295 (1079)
++++..... ..........++..+ .+++++++++|+++...+-+.+...+ + ......-||.++...+.
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~ 181 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQIN 181 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcc
Confidence 999954321 112223344444443 23578999999998753211111111 0 01112233334433211
Q ss_pred ---hhhcCCCceEeCCCCCHHHHHHHHHHHh
Q 044755 296 ---LFRMGSQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 296 ---~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
..+++ ...+.+.+++.+|-.+++.+++
T Consensus 182 ~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 182 IMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp TCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 11221 2479999999999999999988
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.72 E-value=3.1e-08 Score=97.53 Aligned_cols=104 Identities=20% Similarity=0.245 Sum_probs=76.4
Q ss_pred cEEEecCCCCcccccCCcchhccCCcceEEEecCcccccc-CccccccccccEEeccccccCC-cc-cccCCcccceeec
Q 044755 530 EFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVECMLDD-IA-IIGKLKNLEILSF 606 (1079)
Q Consensus 530 r~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~-~~-~i~~L~~L~~L~l 606 (1079)
+.+++.++.. ..+ |..+. +.|++|+|++|.+..+ |..++.+++|++|+|++|.++. |. .++++.+|++|++
T Consensus 15 ~~l~~~~n~l-~~i--P~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRL-ASV--PAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCC-SSC--CSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCC-Ccc--CCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 3455544432 333 44432 6788888888888877 5568888888888888888887 43 4678888999999
Q ss_pred cCCcCcccChh-hccCCcccEEcccccccccccCh
Q 044755 607 WGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIAP 640 (1079)
Q Consensus 607 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~ 640 (1079)
++|.+..+|.. +..+++|++|++++| .+...+.
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~ 122 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNN-PWDCECR 122 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSS-CBCTTBG
T ss_pred CCCccceeCHHHhccccCCCEEEeCCC-Ccccccc
Confidence 88888888776 788889999999887 5555443
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=8.8e-08 Score=105.63 Aligned_cols=291 Identities=13% Similarity=0.089 Sum_probs=153.3
Q ss_pred CCCcccEEEecCCCCcccccCCcchhcc-CCcceEEEecCcccc--ccCccccccccccEEeccccccCCcccccC----
Q 044755 525 ECLRLEFLHINPKDSFFEINNPCNFFTG-MRKLRVVDFTRMQLL--LLPSSIDLLVNLQTLCLVECMLDDIAIIGK---- 597 (1079)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~---- 597 (1079)
...+++.|.+.+.-.... ...+.. +++|++|||++|.+. ..+. +.++.++++.+..+.+.. ..+.+
T Consensus 23 ~~~~l~~L~l~g~i~~~~----~~~l~~~l~~L~~LdLs~n~i~~~~~~~--~~~~~~~~~~~~~~~I~~-~aF~~~~~~ 95 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAED----FRHLRDEFPSLKVLDISNAEIKMYSGKA--GTYPNGKFYIYMANFVPA-YAFSNVVNG 95 (329)
T ss_dssp HHHHCSEEEEEEEECHHH----HHHHHHSCTTCCEEEEEEEEECCEEESS--SSSGGGCCEEECTTEECT-TTTEEEETT
T ss_pred hhCceeEEEEeccccHHH----HHHHHHhhccCeEEecCcceeEEecCcc--ccccccccccccccccCH-HHhcccccc
Confidence 355677787776321111 122334 788999999999988 3322 223335666665554322 34555
Q ss_pred ----CcccceeeccCCcCcccChh-hccCCcccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhh
Q 044755 598 ----LKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERIN 672 (1079)
Q Consensus 598 ----L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 672 (1079)
+.+|+.|++.. .++.++.. |..+++|+.|+++++ .+..+++..+..+.++..+.......... ...
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~-------~~~ 166 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRF-------KNR 166 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHT-------STT
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhc-------ccc
Confidence 89999999988 78888664 888999999999886 67778888788777777776543211000 000
Q ss_pred cchhhhccCCCCc-EEEEEeeCCCCCCchhhhcccceeeeeeecCCcccceEeeccccccccccccccccccCCCceeec
Q 044755 673 ARLDELMHLPRLT-TLEVHVKNDNVLPEGFFARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHV 751 (1079)
Q Consensus 673 ~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l 751 (1079)
.....+..+..|+ .+.+ .....++...+... ....++..+.+.+.-.... ...+ ...+++|+.|++
T Consensus 167 i~~~~f~~~~~L~~~i~~--~~~~~l~~~~~~~~---------~~~~~~~~l~~~~~l~~~~-~~~l-~~~~~~L~~l~L 233 (329)
T 3sb4_A 167 WEHFAFIEGEPLETTIQV--GAMGKLEDEIMKAG---------LQPRDINFLTIEGKLDNAD-FKLI-RDYMPNLVSLDI 233 (329)
T ss_dssp TTTSCEEESCCCEEEEEE--CTTCCHHHHHHHTT---------CCGGGCSEEEEEECCCHHH-HHHH-HHHCTTCCEEEC
T ss_pred ccccccccccccceeEEe--cCCCcHHHHHhhcc---------cCccccceEEEeeeecHHH-HHHH-HHhcCCCeEEEC
Confidence 0011122344454 2222 22222332221100 0122334444433211000 0000 012567777777
Q ss_pred cCCCCcceecccCCcCCCCCCCCccceeeccccccccccccCcCCcCCCCCcc-eEEeecCCCCCcccchHHhccCCccc
Q 044755 752 QNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELK-TIRVELCDQLSNIFLLSAAKCLPRLE 830 (1079)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~-~L~l~~c~~l~~l~~~~~~~~l~~L~ 830 (1079)
.++. +..+.... + ..+++|+.+.+.+. ++.+.... ...+++|+ .|.+.+ .++.+++ ..+.++++|+
T Consensus 234 ~~n~-i~~I~~~a--F---~~~~~L~~l~l~~n--i~~I~~~a--F~~~~~L~~~l~l~~--~l~~I~~-~aF~~c~~L~ 300 (329)
T 3sb4_A 234 SKTN-ATTIPDFT--F---AQKKYLLKIKLPHN--LKTIGQRV--FSNCGRLAGTLELPA--SVTAIEF-GAFMGCDNLR 300 (329)
T ss_dssp TTBC-CCEECTTT--T---TTCTTCCEEECCTT--CCEECTTT--TTTCTTCCEEEEECT--TCCEECT-TTTTTCTTEE
T ss_pred CCCC-cceecHhh--h---hCCCCCCEEECCcc--cceehHHH--hhCChhccEEEEEcc--cceEEch-hhhhCCccCC
Confidence 7643 33332111 1 45677777777662 55553322 34566777 777765 5666654 3455677777
Q ss_pred eEeeccccccccccccccccccccccccccccccEEe
Q 044755 831 RIAVINCRNIQEIFVVDGEYDAIDHQKIEFSQLRTLC 867 (1079)
Q Consensus 831 ~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~ 867 (1079)
.+.+.+. .++.+. +..+..+++|+.+.
T Consensus 301 ~l~l~~n-~i~~I~---------~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGD-KITTLG---------DELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSS-CCCEEC---------TTTTCTTCCCCEEE
T ss_pred EEEeCCC-ccCccc---------hhhhcCCcchhhhc
Confidence 7776432 333332 12234466777765
No 155
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.69 E-value=3.9e-08 Score=108.38 Aligned_cols=175 Identities=14% Similarity=0.098 Sum_probs=108.3
Q ss_pred CccccccHHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHH
Q 044755 153 GYEAFESRLCALKSVQNALT-----DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEI 227 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 227 (1079)
....|+|++..++.+..++. ......+.|+|++|+|||++|+.+++.... ..++++++......++..
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~~-- 82 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLAA-- 82 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHHH--
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHHH--
Confidence 44578999998888887775 234467889999999999999999987641 234555544333222221
Q ss_pred HHHhCCCccccchHHHHHHHHHHHHc--CCcEEEEEeCCCCcc--ccccccCCCC---------C---------CCCCcE
Q 044755 228 AEKLGLVLEEETGSRRASRLYERLKK--EEKILIILDNIWKCV--DLEAVGIPFG---------D---------DHKGCK 285 (1079)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~--~~~~LlvlDdv~~~~--~~~~l~~~l~---------~---------~~~gs~ 285 (1079)
.+.. .+..+|++||++... ....+...+. . ...+.+
T Consensus 83 ----------------------~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 83 ----------------------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ----------------------HHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ----------------------HHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 1211 356688899987642 1111110000 0 012356
Q ss_pred EEEEecChhhhh-hc--CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 044755 286 LLLTARDRNVLF-RM--GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIARAL 357 (1079)
Q Consensus 286 iivTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 357 (1079)
+|.||....... .+ .....+.+.+++.++..+++.+.+..... .--.+..+.|++.++|.|-.+..+...+
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 777766442211 11 12357999999999999999988743211 1124567889999999998776665544
No 156
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=6.1e-08 Score=107.02 Aligned_cols=191 Identities=13% Similarity=0.101 Sum_probs=116.5
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEK 230 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 230 (1079)
|.....++|++..++.+..++..+..+.+.++|++|+||||+|+.+++.......-...+.++.+.......+. +.+..
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 99 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIR-EKVKE 99 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTH-HHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHH-HHHHH
Confidence 34455688999999999999987766669999999999999999999885322100123444444321111111 11110
Q ss_pred hCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEEEecChhhh-hh-cCCCceEe
Q 044755 231 LGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLTARDRNVL-FR-MGSQKNFS 306 (1079)
Q Consensus 231 l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v~-~~-~~~~~~~~ 306 (1079)
+... ..+..+++.++|+||++.. ..++.+...+.....++++|+||...... .. ......+.
T Consensus 100 ~~~~--------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~ 165 (327)
T 1iqp_A 100 FART--------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFR 165 (327)
T ss_dssp HHHS--------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEE
T ss_pred HHhh--------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEE
Confidence 0000 0011257889999999864 23333333332334567888888765321 11 11224789
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 044755 307 IDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIARAL 357 (1079)
Q Consensus 307 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 357 (1079)
+.+++.++...++.+.+..... .--.+..+.|++.++|.|..+..+...+
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 166 FRPLRDEDIAKRLRYIAENEGL-ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTC-EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999999999999988733211 1224567889999999998655544433
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=3.4e-08 Score=108.98 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=32.2
Q ss_pred CCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCc-cccccccccEEeccc
Q 044755 526 CLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVE 586 (1079)
Q Consensus 526 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~ 586 (1079)
|++|+.|.+.. ....+ +...|.++++|+.|+++++.+..+++ .+..+.++.++.+..
T Consensus 100 ~~~L~~l~L~~--~i~~I--~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNI--EDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCT--TCCEE--CTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCc--cccch--hHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 66666666655 23344 55566666667777776666655533 355555555555443
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.63 E-value=7.6e-08 Score=94.41 Aligned_cols=83 Identities=24% Similarity=0.264 Sum_probs=66.4
Q ss_pred CcceEEEecCcccccc-CccccccccccEEeccccccCC-c-ccccCCcccceeeccCCcCcccChh-hccCCcccEEcc
Q 044755 554 RKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVECMLDD-I-AIIGKLKNLEILSFWGSVIVMLPEE-LGHLTKLRQLDL 629 (1079)
Q Consensus 554 ~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 629 (1079)
+.|++|+|++|.++.+ |..+..+++|++|+|++|.++. + ..+.++.+|++|++++|.+..+|.. +.++++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 6778888888888877 5568888888888888888877 3 4467888888888888888888764 788888999988
Q ss_pred cccccccc
Q 044755 630 SNCFKLKV 637 (1079)
Q Consensus 630 ~~~~~l~~ 637 (1079)
++| .+..
T Consensus 110 ~~N-~~~c 116 (170)
T 3g39_A 110 LNN-PWDC 116 (170)
T ss_dssp CSS-CBCT
T ss_pred CCC-CCCC
Confidence 887 4443
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.57 E-value=7.3e-08 Score=107.32 Aligned_cols=98 Identities=22% Similarity=0.213 Sum_probs=62.9
Q ss_pred EEecCc-cccccCccccccccccEEeccc-cccCC--cccccCCcccceeeccCCcCcccCh-hhccCCcccEEcccccc
Q 044755 559 VDFTRM-QLLLLPSSIDLLVNLQTLCLVE-CMLDD--IAIIGKLKNLEILSFWGSVIVMLPE-ELGHLTKLRQLDLSNCF 633 (1079)
Q Consensus 559 L~L~~~-~i~~lp~~i~~L~~L~~L~L~~-~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 633 (1079)
++++++ +++.+|. |..+.+|++|+|++ |.++. +..++.|.+|++|+|++|.+..+|. .|.+|++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N- 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN- 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-
Confidence 456665 6666666 66666777777764 66665 2456667777777777776666644 4566777777777765
Q ss_pred cccccChhhhhcccccceeecccccc
Q 044755 634 KLKVIAPNVISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 634 ~l~~~~~~~l~~L~~L~~L~l~~~~~ 659 (1079)
.+..+|+..+..+. |+.|++.+|.+
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCc
Confidence 56666665444444 67777666654
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.52 E-value=5.5e-07 Score=98.83 Aligned_cols=186 Identities=11% Similarity=0.065 Sum_probs=114.7
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEK 230 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 230 (1079)
|.....++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++.......-...+.++.+.......+. ++
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~--- 88 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR-HK--- 88 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSS-HH---
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHH-HH---
Confidence 34455688999999999999887666569999999999999999999875321100112344444321111110 00
Q ss_pred hCCCccccchHHHHHHHHHH--HHcCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEEEecChhh-hhh-cCCCce
Q 044755 231 LGLVLEEETGSRRASRLYER--LKKEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLTARDRNV-LFR-MGSQKN 304 (1079)
Q Consensus 231 l~~~~~~~~~~~~~~~l~~~--l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~-~~~~~~ 304 (1079)
....... +..+++-++|+||++.. ...+.+...+.....++++|+||....- ... ......
T Consensus 89 -------------~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 155 (319)
T 2chq_A 89 -------------IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (319)
T ss_dssp -------------HHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEE
T ss_pred -------------HHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeE
Confidence 0000000 01256889999999764 2334444444334456788888865531 111 223358
Q ss_pred EeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHH
Q 044755 305 FSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIA 354 (1079)
Q Consensus 305 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 354 (1079)
+++.+++.++...++.+.+...... --.+..+.|++.++|.+..+....
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 156 FRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999887332211 124567888999999987654433
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.49 E-value=3.3e-08 Score=110.27 Aligned_cols=133 Identities=18% Similarity=0.117 Sum_probs=63.5
Q ss_pred CcceEEEecCccccc--cCccccccccccEEeccccccCC--cccc-----cCCcccceeeccCCcCcc-----cChhhc
Q 044755 554 RKLRVVDFTRMQLLL--LPSSIDLLVNLQTLCLVECMLDD--IAII-----GKLKNLEILSFWGSVIVM-----LPEELG 619 (1079)
Q Consensus 554 ~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~l~~--~~~i-----~~L~~L~~L~l~~~~l~~-----lp~~i~ 619 (1079)
+.|++|+|++|.+.. +..-...+.+|++|+|++|.+.. ...+ ....+|++|++++|.+.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 456666666665542 11112234556666666665544 2222 134556666666665532 333445
Q ss_pred cCCcccEEcccccccccccC----hhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCC
Q 044755 620 HLTKLRQLDLSNCFKLKVIA----PNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKND 694 (1079)
Q Consensus 620 ~L~~L~~L~l~~~~~l~~~~----~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 694 (1079)
.+++|++|+|++| .+.... ...+...++|++|++++|.+. ..........+...++|+.|++++|.+
T Consensus 181 ~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~-------~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 181 GNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAG-------DTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp TCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCC-------HHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred cCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCC-------HHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 5566666666665 333221 112344455666666655443 111112233444455566655555443
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.47 E-value=7.3e-06 Score=92.20 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=90.5
Q ss_pred CCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCc-cccccccccEEeccccccCC--cccccCCcccc
Q 044755 526 CLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECMLDD--IAIIGKLKNLE 602 (1079)
Q Consensus 526 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~ 602 (1079)
+..++.+.+.+. ...+ +...|.++ +|+.+++..+ ++.++. .+.+ .+|+.+.+.. .++. ...+.+|.+|+
T Consensus 112 ~~~l~~i~ip~~--i~~I--~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 112 LKGYNEIILPNS--VKSI--PKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp CSSCSEEECCTT--CCEE--CTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred cCCccEEEECCc--cCEe--hHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCC
Confidence 355666665542 2344 55667775 6888888766 666654 4555 3688888876 4554 46788899999
Q ss_pred eeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecccc
Q 044755 603 ILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 657 (1079)
Q Consensus 603 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 657 (1079)
.+++.+|.+..+|.......+|+.+.+.. .++.++...+.++.+|+.+.+..+
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT
T ss_pred eeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC
Confidence 99999988999988755578999999975 488888888899999999998754
No 163
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.47 E-value=1.1e-06 Score=98.82 Aligned_cols=194 Identities=13% Similarity=0.156 Sum_probs=111.8
Q ss_pred CccccccHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHh
Q 044755 153 GYEAFESRLCALKSVQNALTDVN-VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKL 231 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 231 (1079)
....++||+..++.+..++..+. ...+.|+|++|+||||+|+.+++.......+.. ..+... .....+....
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~~~~ 86 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIEQGR 86 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHHTSC
T ss_pred chhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHhccC
Confidence 44568999999999999987544 357889999999999999999987643221100 000000 0011111000
Q ss_pred CCCc-----cccchHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEEEecChhh-hhh-
Q 044755 232 GLVL-----EEETGSRRASRLYERLK----KEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLTARDRNV-LFR- 298 (1079)
Q Consensus 232 ~~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~- 298 (1079)
.... ......+....+.+.+. .+++.++|+||++.. ...+.+...+.....+..+|++|....- ...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH
Confidence 0000 00000111223333332 246789999999764 2233332222223346677777764431 111
Q ss_pred cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHHH
Q 044755 299 MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTIA 354 (1079)
Q Consensus 299 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 354 (1079)
......+++.+++.++..+++.+.+...... --.+....|++.++|.|..+..+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~-~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 2334689999999999999999877321111 123557889999999998776554
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.40 E-value=4.3e-07 Score=101.02 Aligned_cols=100 Identities=18% Similarity=0.109 Sum_probs=76.6
Q ss_pred EEecCCCCcccccCCcchhccCCcceEEEecC-ccccccC-ccccccccccEEeccccccCC--cccccCCcccceeecc
Q 044755 532 LHINPKDSFFEINNPCNFFTGMRKLRVVDFTR-MQLLLLP-SSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFW 607 (1079)
Q Consensus 532 L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~ 607 (1079)
++..+++....+ |. +..+++|++|+|++ |.+..+| ..++.|.+|++|+|++|.++. +..+++|.+|++|+|+
T Consensus 13 v~~~~~n~l~~i--p~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 13 LRCTRDGALDSL--HH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp EECCSSCCCTTT--TT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEcCCCCCCCcc--CC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 344443233445 65 67888899999986 8888886 468899999999999999887 4678899999999999
Q ss_pred CCcCcccChhhccCCcccEEccccccccc
Q 044755 608 GSVIVMLPEELGHLTKLRQLDLSNCFKLK 636 (1079)
Q Consensus 608 ~~~l~~lp~~i~~L~~L~~L~l~~~~~l~ 636 (1079)
+|.+..+|..+.....|++|++.+| .+.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGN-PLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSS-CCC
T ss_pred CCccceeCHHHcccCCceEEEeeCC-Ccc
Confidence 9999988876554445999999887 343
No 165
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.36 E-value=1.3e-06 Score=87.81 Aligned_cols=153 Identities=13% Similarity=0.108 Sum_probs=88.4
Q ss_pred CccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcC-----CCCEEEEEEeCCccCHHHHHHHH
Q 044755 153 GYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDK-----LFDLVVFSEVSQTLDIKKIQQEI 227 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~F~~~~wv~~~~~~~~~~~~~~i 227 (1079)
....++||+++++++.+++.....+.+.|+|.+|+|||++|+.+++...... .....++++++.. .
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--- 90 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------V--- 90 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH------H---
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH------h---
Confidence 3456889999999999999876667889999999999999999998864311 1123455543211 0
Q ss_pred HHHhCCCccccchHHHHHHHHHHH-HcCCcEEEEEeCCCCcc---------ccccccCCCCCCCCCcEEEEEecChhhhh
Q 044755 228 AEKLGLVLEEETGSRRASRLYERL-KKEEKILIILDNIWKCV---------DLEAVGIPFGDDHKGCKLLLTARDRNVLF 297 (1079)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~~LlvlDdv~~~~---------~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 297 (1079)
. +.... .........+...+ ..+++.+||+||++... .+..+...+.. ..+..+|.||.......
T Consensus 91 -~--~~~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~ 165 (195)
T 1jbk_A 91 -A--GAKYR-GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQ 165 (195)
T ss_dssp -T--TTCSH-HHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHHHH
T ss_pred -c--cCCcc-ccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHHHHH
Confidence 0 00000 00111222333333 23578899999997642 11111111111 12445777776554221
Q ss_pred ------h-cCCCceEeCCCCCHHHHHHHH
Q 044755 298 ------R-MGSQKNFSIDILNEEEAWRLF 319 (1079)
Q Consensus 298 ------~-~~~~~~~~l~~L~~~~~~~lf 319 (1079)
. ......+.+.+++.++..+++
T Consensus 166 ~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 166 YIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 1 122236889999988876653
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.31 E-value=8.7e-08 Score=106.86 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=94.7
Q ss_pred CCcceEEEecCcccccc-Cccccc-----cccccEEeccccccCC--cccc-cCCcccceeeccCCcCcccC-----hhh
Q 044755 553 MRKLRVVDFTRMQLLLL-PSSIDL-----LVNLQTLCLVECMLDD--IAII-GKLKNLEILSFWGSVIVMLP-----EEL 618 (1079)
Q Consensus 553 l~~Lr~L~L~~~~i~~l-p~~i~~-----L~~L~~L~L~~~~l~~--~~~i-~~L~~L~~L~l~~~~l~~lp-----~~i 618 (1079)
++.|++|+|++|.+... ...+.. ..+|++|+|++|.+.. +..+ ..+.+|++|+|++|.+.... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 56788999999988743 222322 3799999999999876 3333 35678999999999876432 222
Q ss_pred -ccCCcccEEcccccccccccCh----hhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeC
Q 044755 619 -GHLTKLRQLDLSNCFKLKVIAP----NVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKN 693 (1079)
Q Consensus 619 -~~L~~L~~L~l~~~~~l~~~~~----~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 693 (1079)
...++|++|++++| .++.... ..+..+++|++|++++|.+. ..........+...++|+.|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~-------~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG-------DEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCH-------HHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCC-------cHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 24688999999998 5654322 22467889999999998764 11122345667777889999988876
Q ss_pred CCC
Q 044755 694 DNV 696 (1079)
Q Consensus 694 ~~~ 696 (1079)
+..
T Consensus 223 i~~ 225 (372)
T 3un9_A 223 AGD 225 (372)
T ss_dssp CCH
T ss_pred CCH
Confidence 643
No 167
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.27 E-value=6.4e-06 Score=88.55 Aligned_cols=177 Identities=16% Similarity=0.202 Sum_probs=103.9
Q ss_pred CccccccHHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccC
Q 044755 153 GYEAFESRLCALKSVQNALTD-------------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLD 219 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 219 (1079)
....++|.+..++++.+++.. ...+-+.|+|++|+|||++|+.+++.... ..+.+..+.-..
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~~~ 89 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-----TFIRVVGSELVK 89 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehHHHHH
Confidence 345678999988888877641 34567899999999999999999987642 233444332111
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc----------------ccccccCCCC--CCC
Q 044755 220 IKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV----------------DLEAVGIPFG--DDH 281 (1079)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------------~~~~l~~~l~--~~~ 281 (1079)
. .. .........+.......++.+|++||++... .+..+...+. ...
T Consensus 90 ~--------------~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 90 K--------------FI-GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp C--------------ST-THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred h--------------cc-chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 0 00 0111223334444444677899999996531 0111111110 122
Q ss_pred CCcEEEEEecChhhhhh--c---CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCC-chHHH
Q 044755 282 KGCKLLLTARDRNVLFR--M---GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGL-PIALT 351 (1079)
Q Consensus 282 ~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~ 351 (1079)
.+..||.||........ . .....+.++..+.++..+++...+.......+ .....|++.+.|. |-.+.
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCCHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCCHHHHH
Confidence 35677888875533221 1 22347999999999999999988843221111 1146677788774 43333
No 168
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.23 E-value=2.9e-05 Score=82.17 Aligned_cols=174 Identities=16% Similarity=0.174 Sum_probs=97.7
Q ss_pred cccccHHHHHHHHHHHh---cC---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHH
Q 044755 155 EAFESRLCALKSVQNAL---TD---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKK 222 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 222 (1079)
..++|.+..++.+.+++ .. ...+-+.++|++|+|||++|+.+++.... ..+.++++.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-----PFLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----CEEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEechHHHHhh--
Confidence 45677776666654443 22 23456889999999999999999987642 2345555432110
Q ss_pred HHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc-------------c----cccccCCCC--CCCCC
Q 044755 223 IQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV-------------D----LEAVGIPFG--DDHKG 283 (1079)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-------------~----~~~l~~~l~--~~~~g 283 (1079)
... ........++.......+.+|++||++... . ...+...+. ....+
T Consensus 79 ------------~~~-~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 ------------IGG-LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp ------------STT-HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred ------------ccC-hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 000 011222334444444568999999998641 0 111111111 11235
Q ss_pred cEEEEEecChhhhh-h-c---CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCch
Q 044755 284 CKLLLTARDRNVLF-R-M---GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPI 348 (1079)
Q Consensus 284 s~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 348 (1079)
..||.||....... . . .....+.++..+.++-.+++...+...............+++.+.|.+-
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCH
Confidence 56777776554221 1 1 2246788999999999999998873222222222335778888888754
No 169
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.23 E-value=1.1e-05 Score=90.85 Aligned_cols=204 Identities=17% Similarity=0.224 Sum_probs=97.7
Q ss_pred CcchhccCCcceEEEecCccccccCccccccccccEEeccccccCC--cccccCCcccceeeccCCcCcccChh-hccCC
Q 044755 546 PCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSVIVMLPEE-LGHLT 622 (1079)
Q Consensus 546 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~ 622 (1079)
....|.++.+|+.++++++.++.+|...-...+|+.+.|..+ ++. ...+.++.+|+.+++..+ +..++.. |.+ .
T Consensus 172 ~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~ 248 (401)
T 4fdw_A 172 KEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-S 248 (401)
T ss_dssp CSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-C
T ss_pred hHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-C
Confidence 444455555566666655555555544333455555555432 333 244555556666665543 4444333 333 5
Q ss_pred cccEEcccccccccccChhhhhcccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCCCCCCchhh
Q 044755 623 KLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKNDNVLPEGFF 702 (1079)
Q Consensus 623 ~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 702 (1079)
+|+.+.+.. .++.++...+.++++|+.+.+.++...... ........+..+++|+.+.+. +.+..++...
T Consensus 249 ~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~------~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~a- 318 (401)
T 4fdw_A 249 GITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDP------EAMIHPYCLEGCPKLARFEIP-ESIRILGQGL- 318 (401)
T ss_dssp CCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCT------TCEECTTTTTTCTTCCEECCC-TTCCEECTTT-
T ss_pred CccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCc------ccEECHHHhhCCccCCeEEeC-CceEEEhhhh-
Confidence 555555533 355555555556666666655544321000 000112234445555555443 1222222221
Q ss_pred hcccceeeeeeecCCcccceEeeccccccccccccccccccCCCceeeccCCCCcceecccCCcCCCCCCCC-ccceeec
Q 044755 703 ARKLERFKISKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFSRLKHLHVQNNPDFMCIVDSKERVPLDDAFP-ILESLNL 781 (1079)
Q Consensus 703 ~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l 781 (1079)
+.++.+|+.+.|... +..+.... ...+ +|+.+.+.++.-.. +... .+ .+++ ++..|.+
T Consensus 319 -----------F~~c~~L~~l~lp~~--l~~I~~~a-F~~~-~L~~l~l~~n~~~~-l~~~--~F---~~~~~~l~~l~v 377 (401)
T 4fdw_A 319 -----------LGGNRKVTQLTIPAN--VTQINFSA-FNNT-GIKEVKVEGTTPPQ-VFEK--VW---YGFPDDITVIRV 377 (401)
T ss_dssp -----------TTTCCSCCEEEECTT--CCEECTTS-SSSS-CCCEEEECCSSCCB-CCCS--SC---CCSCTTCCEEEE
T ss_pred -----------hcCCCCccEEEECcc--ccEEcHHh-CCCC-CCCEEEEcCCCCcc-cccc--cc---cCCCCCccEEEe
Confidence 445778888888543 22222111 1345 89999998763221 1111 11 3343 6777877
Q ss_pred cc
Q 044755 782 YN 783 (1079)
Q Consensus 782 ~~ 783 (1079)
..
T Consensus 378 p~ 379 (401)
T 4fdw_A 378 PA 379 (401)
T ss_dssp CG
T ss_pred CH
Confidence 54
No 170
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.18 E-value=1e-06 Score=92.27 Aligned_cols=173 Identities=14% Similarity=0.125 Sum_probs=103.3
Q ss_pred CccccccH---HHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHH
Q 044755 153 GYEAFESR---LCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 153 ~~~~~~gr---~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
....|+++ ...++.+..+......+.+.|+|++|+||||+|+.+++..... ...++|++++...+. +.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~- 96 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------ST- 96 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CG-
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HH-
Confidence 33456653 3556666666665566789999999999999999999887643 334677776542110 00
Q ss_pred HhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc----cccccCCCCC-CCCC-cEEEEEecChh---------
Q 044755 230 KLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD----LEAVGIPFGD-DHKG-CKLLLTARDRN--------- 294 (1079)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----~~~l~~~l~~-~~~g-s~iivTtR~~~--------- 294 (1079)
...+.+ .++.+||+||++.... .+.+...+.. ...+ .++|+||+...
T Consensus 97 ----------------~~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 97 ----------------ALLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp ----------------GGGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred ----------------HHHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 000111 3567899999876421 1112111100 0112 25888877432
Q ss_pred hhhhcCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 044755 295 VLFRMGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTI 353 (1079)
Q Consensus 295 v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 353 (1079)
+...+.....+++.+++.++..+++.+.+..... .-..+..+.|++.++|.+-.+..+
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHH
Confidence 1111222368999999999999999988732111 112456788999999987665544
No 171
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=7.4e-07 Score=85.77 Aligned_cols=67 Identities=13% Similarity=0.206 Sum_probs=38.4
Q ss_pred cccceeeecccceeeecCCCCccccccccccceEEEEccCcccccccccchhh---hccccceEEEeccccccee
Q 044755 919 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILSKCPKLKYIFSASMLG---SFEHLQHLEICHCKGLQEI 990 (1079)
Q Consensus 919 ~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~---~l~~L~~L~i~~c~~l~~i 990 (1079)
..|+.|++++|.+++.. ...+..+++|++|++++|.++++-....... ..++|++|+|++|+++++-
T Consensus 61 ~~L~~LDLs~~~Itd~G-----L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIG-----FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCEEEEEEESCCCCGGG-----GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ceEeEEeCcCCCccHHH-----HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 35777777777655431 1234566777777777777776542211111 1245777777777666543
No 172
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.18 E-value=3.1e-05 Score=82.39 Aligned_cols=176 Identities=17% Similarity=0.224 Sum_probs=94.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH
Q 044755 173 DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLK 252 (1079)
Q Consensus 173 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 252 (1079)
....+.+.|+|++|+|||++|+.+++... .. .+.++.+... .+. ...........+.....
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~----~~-~~~i~~~~~~------------~g~--~~~~~~~~~~~~~~~~~ 121 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESN----FP-FIKICSPDKM------------IGF--SETAKCQAMKKIFDDAY 121 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHT----CS-EEEEECGGGC------------TTC--CHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhC----CC-EEEEeCHHHh------------cCC--chHHHHHHHHHHHHHHH
Confidence 44567889999999999999999998753 22 2233332210 010 00001112233333333
Q ss_pred cCCcEEEEEeCCCCc---------------cccccccCCCCCCCCCcEEEEEecChhhhhh---cC-CCceEeCCCCCH-
Q 044755 253 KEEKILIILDNIWKC---------------VDLEAVGIPFGDDHKGCKLLLTARDRNVLFR---MG-SQKNFSIDILNE- 312 (1079)
Q Consensus 253 ~~~~~LlvlDdv~~~---------------~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~---~~-~~~~~~l~~L~~- 312 (1079)
..+..+|++||++.. ..+..+............||.||...+.... .+ -...+++++++.
T Consensus 122 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r 201 (272)
T 1d2n_A 122 KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATG 201 (272)
T ss_dssp TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEH
T ss_pred hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHH
Confidence 457889999998643 0111111111112234456777777654332 11 145789999987
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC------CchHHHHHHHHHhcCChhHHHHHHHHhc
Q 044755 313 EEAWRLFKLMADDHVENRELQSTATEVAQACKG------LPIALTTIARALRNKSVPEWKSALQELR 373 (1079)
Q Consensus 313 ~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g------lPlai~~~~~~l~~~~~~~w~~~~~~l~ 373 (1079)
++...++.+... . ..+....|++.+.| ++-++.++-..........+..+++.+.
T Consensus 202 ~~i~~i~~~~~~--~----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~ 262 (272)
T 1d2n_A 202 EQLLEALELLGN--F----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLR 262 (272)
T ss_dssp HHHHHHHHHHTC--S----CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--C----CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 666666655321 1 13457788888887 3444444433332224456666666553
No 173
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=1.3e-05 Score=93.56 Aligned_cols=193 Identities=12% Similarity=0.077 Sum_probs=111.1
Q ss_pred cCCccccccHHHHHHHHHHHhcC-----------------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEE
Q 044755 151 RKGYEAFESRLCALKSVQNALTD-----------------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSE 213 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 213 (1079)
|.....++|++..++++.+|+.. +..+.+.|+|++|+||||+|+.+++... + .++.++
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQN 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEEC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEe
Confidence 44566789999999999999874 1347899999999999999999998863 2 345566
Q ss_pred eCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc-----cccccCCCCCCCCCcEEEE
Q 044755 214 VSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD-----LEAVGIPFGDDHKGCKLLL 288 (1079)
Q Consensus 214 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-----~~~l~~~l~~~~~gs~iiv 288 (1079)
++....... ....+........-......... .....+++.+||+|+++.... +..+...+.. .+..||+
T Consensus 110 ~s~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIl 184 (516)
T 1sxj_A 110 ASDVRSKTL-LNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLIL 184 (516)
T ss_dssp TTSCCCHHH-HHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEE
T ss_pred CCCcchHHH-HHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEE
Confidence 665544332 22222211100000000000000 000125788999999976421 1222111111 2334666
Q ss_pred EecChh---hhhhcCCCceEeCCCCCHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCC-CchHHHHHHHH
Q 044755 289 TARDRN---VLFRMGSQKNFSIDILNEEEAWRLFKLMADD--HVENRELQSTATEVAQACKG-LPIALTTIARA 356 (1079)
Q Consensus 289 TtR~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~i~~~~~g-lPlai~~~~~~ 356 (1079)
++.... +.........+.+.+++.++..+.+.+.+.. .... .+....|++.++| ++-++..+..+
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHHTHH
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 655432 2222233457999999999999999887722 1111 2347788999998 45555555433
No 174
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.14 E-value=8.8e-05 Score=83.69 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=32.7
Q ss_pred CcchhccCCcceEEEecCccccccCc-cccccccccEEeccccccCC--cccccCCcccceeecc
Q 044755 546 PCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFW 607 (1079)
Q Consensus 546 ~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~ 607 (1079)
....|.++.+|+.+.+..+ ++.+++ ++.++.+|+.++|..+ ++. ...+..+.+|+.+.+.
T Consensus 63 g~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred HHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 4555677777777777533 555533 3566666666666433 222 2334445555554443
No 175
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.14 E-value=3.1e-05 Score=87.85 Aligned_cols=178 Identities=15% Similarity=0.183 Sum_probs=106.8
Q ss_pred cCCccccccHHHHH---HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHH
Q 044755 151 RKGYEAFESRLCAL---KSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEI 227 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 227 (1079)
|.....++|.+..+ ..+..++..+..+.+.++|++|+||||+|+.+++.... .| +.++... ....++ +++
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~--~f---~~l~a~~-~~~~~i-r~~ 94 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA--DV---ERISAVT-SGVKEI-REA 94 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC--EE---EEEETTT-CCHHHH-HHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC--Ce---EEEEecc-CCHHHH-HHH
Confidence 44556788988888 77888887777788999999999999999999987642 12 2222221 222222 222
Q ss_pred HHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEE-EecChh--hhh-hcCC
Q 044755 228 AEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLL-TARDRN--VLF-RMGS 301 (1079)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iiv-TtR~~~--v~~-~~~~ 301 (1079)
+.. .......+++.+|++|+++... ..+.+...+.. ....+|. ||.+.. +.. ....
T Consensus 95 ~~~----------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 95 IER----------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp HHH----------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTT
T ss_pred HHH----------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCc
Confidence 211 1111123688999999998742 23333222222 1234444 444442 111 1233
Q ss_pred CceEeCCCCCHHHHHHHHHHHhcCC------CCChhhHHHHHHHHHHcCCCchHHHHH
Q 044755 302 QKNFSIDILNEEEAWRLFKLMADDH------VENRELQSTATEVAQACKGLPIALTTI 353 (1079)
Q Consensus 302 ~~~~~l~~L~~~~~~~lf~~~~~~~------~~~~~~~~~~~~i~~~~~glPlai~~~ 353 (1079)
..++.+.+++.++...++.+.+... ....-..+..+.|++.++|.+-.+..+
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 4588999999999999999887321 111223466788888899987654433
No 176
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=6.4e-06 Score=91.71 Aligned_cols=197 Identities=13% Similarity=0.147 Sum_probs=112.6
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCC-CEEEEEEeCCccCHHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLF-DLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
|.....++|+++.++.+..++.....+.+.++|++|+||||+|+.+++.......+ ..++.++.+.......+...+..
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKN 112 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHH
Confidence 34455688999999999999987655558999999999999999999875321011 12344444443333332222211
Q ss_pred HhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEEEecChh-hhhh-cCCCceE
Q 044755 230 KLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLLTARDRN-VLFR-MGSQKNF 305 (1079)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~~~ 305 (1079)
............ .......+++-+|++|+++... ....+...+.......++|++|.... +... ......+
T Consensus 113 ~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 113 FARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred Hhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 110000000000 0000111355799999987642 22223222222234567777775442 1111 1112478
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 044755 306 SIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTI 353 (1079)
Q Consensus 306 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 353 (1079)
.+.+++.++....+.+.+..... .--.+..+.|++.++|.|-.+..+
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENV-KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999988732211 112456888999999998764443
No 177
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.12 E-value=3.1e-06 Score=93.40 Aligned_cols=136 Identities=18% Similarity=0.197 Sum_probs=85.5
Q ss_pred chhccCCcceEEEecCccccccCccccccccccEEeccccccCC--ccccc--CCcccceeeccCC--c------CcccC
Q 044755 548 NFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD--IAIIG--KLKNLEILSFWGS--V------IVMLP 615 (1079)
Q Consensus 548 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~--~L~~L~~L~l~~~--~------l~~lp 615 (1079)
.++..+++|+.|+++++.-..+|. +. +++|+.|+|..|.+.. ...++ ++++|++|+|+.+ . +..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 456778899999998874234554 43 7899999999888765 34454 7889999988532 1 22222
Q ss_pred hhh--ccCCcccEEcccccccccccChhhhh---cccccceeecccccccccCCCCCchhhhcchhhhccCCCCcEEEEE
Q 044755 616 EEL--GHLTKLRQLDLSNCFKLKVIAPNVIS---RLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVH 690 (1079)
Q Consensus 616 ~~i--~~L~~L~~L~l~~~~~l~~~~~~~l~---~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 690 (1079)
..+ ..+++|++|++.+|. +.......+. .+++|++|+++.|.+. ..........+.++++|+.|+++
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~-------d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLT-------DEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSCCB-------HHHHHHHHTTHHHHTTCSEEECC
T ss_pred HHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCCCC-------hHHHHHHHhhcccCCcceEEECC
Confidence 222 357889999998873 3321111222 4788899998877654 11111234445667788888877
Q ss_pred eeC
Q 044755 691 VKN 693 (1079)
Q Consensus 691 ~~~ 693 (1079)
.|.
T Consensus 316 ~n~ 318 (362)
T 2ra8_A 316 YNY 318 (362)
T ss_dssp SBB
T ss_pred CCc
Confidence 654
No 178
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=1.5e-06 Score=83.73 Aligned_cols=94 Identities=11% Similarity=0.117 Sum_probs=67.7
Q ss_pred ccceEEEEccCcccccccccchhhhccccceEEEecccccceeecccccccccCCcccccccCeeecccCCCccccCCCc
Q 044755 948 QNLTRLILSKCPKLKYIFSASMLGSFEHLQHLEICHCKGLQEIISKEGADDQVLPNFVFPQVTSLRLSGLPELKCLYPGM 1027 (1079)
Q Consensus 948 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~ 1027 (1079)
.+|+.|++++|. +++... ..+.++++|++|++++|..+++-.... +.. . ....++|++|+|++|+++++--...
T Consensus 61 ~~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~-L~~--~-~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLER-LSQ--L-ENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHH-HHT--C-HHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHH-HHh--c-ccccCCCCEEEcCCCCcCCHHHHHH
Confidence 479999999996 776532 345689999999999999887642111 100 0 0013589999999999888743221
Q ss_pred cccCCCCccEEEEecCCCcee
Q 044755 1028 HTSEWPALKLLKVSDCDQVTV 1048 (1079)
Q Consensus 1028 ~~~~l~sL~~L~i~~C~~L~~ 1048 (1079)
. ..+++|++|++++|++++.
T Consensus 135 L-~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 L-HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp G-GGCTTCCEEEEESCTTCCC
T ss_pred H-hcCCCCCEEECCCCCCCCc
Confidence 1 2589999999999999875
No 179
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.04 E-value=8.8e-05 Score=82.06 Aligned_cols=181 Identities=11% Similarity=0.090 Sum_probs=104.9
Q ss_pred CccccccHHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCH
Q 044755 153 GYEAFESRLCALKSVQNALT------------DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDI 220 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 220 (1079)
....++|.+..++.+.+++. ....+.|.|+|++|+|||++|+.+++... ...+.++++.-...
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~-----~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG-----ATFFSISASSLTSK 156 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT-----CEEEEEEGGGGCCS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC-----CeEEEEehHHhhcc
Confidence 34467898888888877763 12356889999999999999999998753 12355555432110
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc-------------ccccccCCCC----CCCCC
Q 044755 221 KKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV-------------DLEAVGIPFG----DDHKG 283 (1079)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-------------~~~~l~~~l~----~~~~g 283 (1079)
... ........+.......++.+|++|+++... ....+...+. ....+
T Consensus 157 --------------~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 157 --------------WVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp --------------STT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred --------------ccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 000 011122333444444678999999985421 0111111111 11234
Q ss_pred cEEEEEecChhhhh-h--cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCC-chHHHHHH
Q 044755 284 CKLLLTARDRNVLF-R--MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGL-PIALTTIA 354 (1079)
Q Consensus 284 s~iivTtR~~~v~~-~--~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~ 354 (1079)
..||.||....... . -.....+.+...+.++..+++...+...... -..+....|++.+.|. +-.+..+.
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55666776542211 1 1234578899999999999998887332111 1134578899999884 44555443
No 180
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.03 E-value=0.00021 Score=77.58 Aligned_cols=181 Identities=17% Similarity=0.180 Sum_probs=104.7
Q ss_pred CccccccHHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCH
Q 044755 153 GYEAFESRLCALKSVQNALT------------DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDI 220 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 220 (1079)
....++|.+..++.+.+.+. ....+-|.++|++|+|||+||+.+++.... ...+.++.+.-.+
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~l~~- 84 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLVS- 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCSSCC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHHHHh-
Confidence 34467787877777766652 112367899999999999999999987621 1234444442211
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc-------------cccccCC---CCCCCCCc
Q 044755 221 KKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD-------------LEAVGIP---FGDDHKGC 284 (1079)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~---l~~~~~gs 284 (1079)
...+ ........++......++.+|++|+++.... ...+... +.....+.
T Consensus 85 -------------~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 85 -------------KWLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp -------------SSCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred -------------hhhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 0001 1122334444445456889999999976410 0011111 11122355
Q ss_pred EEEEEecChhhhh---hcCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCch-HHHHH
Q 044755 285 KLLLTARDRNVLF---RMGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPI-ALTTI 353 (1079)
Q Consensus 285 ~iivTtR~~~v~~---~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 353 (1079)
.||.||....... .-.....+.++..+.++-.+++..++...... ........|++.+.|..- .|..+
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS-LTEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC-CCHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 5666665442211 11344678999999999999999887432211 113457789999988743 34443
No 181
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.03 E-value=2.8e-05 Score=85.22 Aligned_cols=183 Identities=9% Similarity=0.075 Sum_probs=105.4
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
|.....++|++..++.+.+++..+.. .++.+.|++|+|||++|+.+++... ...+.++.+.. ... .+++.+.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~-~~~-~i~~~~~ 94 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDC-KID-FVRGPLT 94 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTC-CHH-HHHTHHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEccccc-CHH-HHHHHHH
Confidence 44566788999999999999986554 5677788899999999999998763 23455665542 222 2222221
Q ss_pred HhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc---ccccccCCCCCCCCCcEEEEEecChhhh-hh-cCCCce
Q 044755 230 KLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV---DLEAVGIPFGDDHKGCKLLLTARDRNVL-FR-MGSQKN 304 (1079)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~~~~l~~~l~~~~~gs~iivTtR~~~v~-~~-~~~~~~ 304 (1079)
....... ..+++-+|++||++... ..+.+...+.....+.++|+||....-. .. ......
T Consensus 95 ~~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 95 NFASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HHHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred HHHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 1100000 01377899999998754 2222222221122356788888765311 11 111247
Q ss_pred EeCCCCCHHHHHHHHHH-------HhcCCCCChhhHHHHHHHHHHcCCCchH-HHHHHH
Q 044755 305 FSIDILNEEEAWRLFKL-------MADDHVENRELQSTATEVAQACKGLPIA-LTTIAR 355 (1079)
Q Consensus 305 ~~l~~L~~~~~~~lf~~-------~~~~~~~~~~~~~~~~~i~~~~~glPla-i~~~~~ 355 (1079)
+++.+++.++-.+++.. .+......-...+....|++.++|.+-. +..+-.
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~ 218 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDS 218 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999998885443322 2211111111125677888999887654 333333
No 182
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.02 E-value=8.9e-05 Score=81.73 Aligned_cols=172 Identities=13% Similarity=0.127 Sum_probs=103.2
Q ss_pred CCccccccHHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHH
Q 044755 152 KGYEAFESRLCALKSVQNALT-----DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQE 226 (1079)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 226 (1079)
.....++|++..++++..++. ......|.|+|++|+|||++|+.+++... .. .+.++++.......+
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~--~~---~~~~~~~~~~~~~~~--- 97 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS--AN---IKTTAAPMIEKSGDL--- 97 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT--CC---EEEEEGGGCCSHHHH---
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC--CC---eEEecchhccchhHH---
Confidence 345678999999998888876 23456789999999999999999988753 11 234444322111111
Q ss_pred HHHHhCCCccccchHHHHHHHHHHHH-cCCcEEEEEeCCCCcc--ccccccCCC------------------CCCCCCcE
Q 044755 227 IAEKLGLVLEEETGSRRASRLYERLK-KEEKILIILDNIWKCV--DLEAVGIPF------------------GDDHKGCK 285 (1079)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~--~~~~l~~~l------------------~~~~~gs~ 285 (1079)
...+. ..+..+|++|+++... ....+...+ ....++..
T Consensus 98 ---------------------~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 98 ---------------------AAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp ---------------------HHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred ---------------------HHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 11111 1466788888887641 111111000 00111356
Q ss_pred EEEEecChhhhh-h--cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 044755 286 LLLTARDRNVLF-R--MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTTI 353 (1079)
Q Consensus 286 iivTtR~~~v~~-~--~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 353 (1079)
+|.+|....... . -.....+.+.+++.++...++.+.+.... ..--.+..+.|++.+.|.|-.+..+
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 666666533211 1 12246899999999999999998873221 1122456788888999998554433
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.02 E-value=1.9e-05 Score=85.95 Aligned_cols=147 Identities=11% Similarity=0.084 Sum_probs=83.7
Q ss_pred cccHHHHHHHHHHHhc---------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC--EEEEEEeCCccC
Q 044755 157 FESRLCALKSVQNALT---------------DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFD--LVVFSEVSQTLD 219 (1079)
Q Consensus 157 ~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~ 219 (1079)
++|.+..++.+.+++. ......+.|+|++|+|||++|+.+++......... ..+.++.+.-
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l-- 110 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL-- 110 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT--
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh--
Confidence 5677766666655443 23345789999999999999999988875432221 2333332211
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc-----------cccccccCCCCCCCCCcEEEE
Q 044755 220 IKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC-----------VDLEAVGIPFGDDHKGCKLLL 288 (1079)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~-----------~~~~~l~~~l~~~~~gs~iiv 288 (1079)
.....+. .......++... +.-+|++|+++.. .....+...+.....+..||.
T Consensus 111 ------------~~~~~g~-~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 111 ------------VGQYIGH-TAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ------------CCSSTTC-HHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ------------hhhcccc-cHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 0000000 111112222222 3459999999743 122233222323344667888
Q ss_pred EecChhh----------hhhcCCCceEeCCCCCHHHHHHHHHHHh
Q 044755 289 TARDRNV----------LFRMGSQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 289 TtR~~~v----------~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
||..... ..+ ....+.+++++.++-..++...+
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHH
Confidence 8864322 112 12679999999999999998887
No 184
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.01 E-value=0.00011 Score=80.05 Aligned_cols=180 Identities=16% Similarity=0.166 Sum_probs=106.6
Q ss_pred CCccccccHHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccC
Q 044755 152 KGYEAFESRLCALKSVQNALT------------DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLD 219 (1079)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 219 (1079)
.....++|.+..++.+.+++. ....+-+.++|++|+|||++|+.+++.... ..+.++.+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~v~~~---- 85 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSSS---- 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC-----EEEEEEHH----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC-----CEEEEchH----
Confidence 345568899998888888772 112457899999999999999999987642 12334332
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc-------------cccccC---CCCCCCCC
Q 044755 220 IKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD-------------LEAVGI---PFGDDHKG 283 (1079)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~---~l~~~~~g 283 (1079)
++.. . .. .........++......++.+|++|+++.... ...+.. .+.....+
T Consensus 86 --~l~~----~----~~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 --DLVS----K----WM-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp --HHHT----T----TG-GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred --HHhh----c----cc-chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 1110 0 00 01122334445555556789999999975311 111111 11122345
Q ss_pred cEEEEEecChhhhhh---cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCC-chHHHH
Q 044755 284 CKLLLTARDRNVLFR---MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGL-PIALTT 352 (1079)
Q Consensus 284 s~iivTtR~~~v~~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~ 352 (1079)
..||.||........ -.....+.+...+.++-.+++..++...... .-......|++.+.|. +-.|..
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~l~~la~~t~g~sg~di~~ 226 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV-LTKEDYRTLGAMTEGYSGSDIAV 226 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC-CCHHHHHHHHHTTTTCCHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHcCCCCHHHHHH
Confidence 666667765432211 1234578899999999999999988542211 1134567888888874 434443
No 185
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.00 E-value=0.00023 Score=80.24 Aligned_cols=125 Identities=18% Similarity=0.257 Sum_probs=68.6
Q ss_pred cCCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCc-cccccccccEEeccccc------------cC
Q 044755 524 LECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECM------------LD 590 (1079)
Q Consensus 524 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~------------l~ 590 (1079)
.+|.+|+++.+... ...+ ....|.++.+|+.+++.++ ++.++. .+..+.+|+.+.+..+- +.
T Consensus 68 ~~c~~L~~i~lp~~--i~~I--~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 68 QGCRKVTEIKIPST--VREI--GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTCTTEEEEECCTT--CCEE--CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred hCCCCceEEEeCCC--ccCc--chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence 36778888877542 3445 6667788888888888654 555533 35566666665554321 00
Q ss_pred -----------CcccccCCcccceeeccCCcCcccCh-hhccCCcccEEcccccccccccChhhhhcccccceeeccc
Q 044755 591 -----------DIAIIGKLKNLEILSFWGSVIVMLPE-ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 656 (1079)
Q Consensus 591 -----------~~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 656 (1079)
....+.++.+|+.+.+..+ +..++. .+..+.+|+.+.+.. .++.++...+.++..|+.+.+..
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC--CceEeCchhhccccccceeecCC
Confidence 0123445556666666443 333333 245556666666554 24555555555556665555443
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.99 E-value=4.3e-05 Score=86.97 Aligned_cols=171 Identities=12% Similarity=0.163 Sum_probs=100.5
Q ss_pred HHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchH
Q 044755 163 ALKSVQNALTDVN-VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGS 241 (1079)
Q Consensus 163 ~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 241 (1079)
....+..+..... ...+.|+|++|+||||||+.+++.......-..+++++... +..++...+...
T Consensus 116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~~~~~~~------- 182 (440)
T 2z4s_A 116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLVDSMKEG------- 182 (440)
T ss_dssp HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHHHHHHTT-------
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHHHHHcc-------
Confidence 3444444444333 67899999999999999999998875331112345655432 333333333211
Q ss_pred HHHHHHHHHHHcCCcEEEEEeCCCCccc----cccccCCCCC-CCCCcEEEEEecCh---------hhhhhcCCCceEeC
Q 044755 242 RRASRLYERLKKEEKILIILDNIWKCVD----LEAVGIPFGD-DHKGCKLLLTARDR---------NVLFRMGSQKNFSI 307 (1079)
Q Consensus 242 ~~~~~l~~~l~~~~~~LlvlDdv~~~~~----~~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l 307 (1079)
....+...+. .+.-+|++||++.... -+.+...+.. ...|..||+||... .+..++.....+.+
T Consensus 183 -~~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l 260 (440)
T 2z4s_A 183 -KLNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKL 260 (440)
T ss_dssp -CHHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBC
T ss_pred -cHHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEe
Confidence 0112223332 2567999999976431 1122111110 13467899988863 22233444567899
Q ss_pred CCCCHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCCCchHHH
Q 044755 308 DILNEEEAWRLFKLMADD--HVENRELQSTATEVAQACKGLPIALT 351 (1079)
Q Consensus 308 ~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~i~~~~~glPlai~ 351 (1079)
++++.++-.+++.+.+.. ...+ .++...|++.++|.+-.+.
T Consensus 261 ~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 261 EPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 999999999999988731 1112 2346778899999875443
No 187
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.98 E-value=2.1e-05 Score=87.45 Aligned_cols=196 Identities=11% Similarity=0.082 Sum_probs=105.7
Q ss_pred cCCccccccHHHHHHHHHHHh-cCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCE-----------------
Q 044755 151 RKGYEAFESRLCALKSVQNAL-TDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKL----FDL----------------- 208 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~----------------- 208 (1079)
|.....++|++...+.+.+++ ..++.+.+.|+|+.|+||||+|+.++........ ++.
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 89 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS 89 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeec
Confidence 344556889999999999988 6555445999999999999999999985421110 110
Q ss_pred ---EEEEEeCCcc-CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCCCCCC
Q 044755 209 ---VVFSEVSQTL-DIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIPFGDDHK 282 (1079)
Q Consensus 209 ---~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~ 282 (1079)
.+.+..+... ......++++..+.....-.. .. . ...+ .+++-++|+|++.... ..+.+...+.....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~-~-ls~l-~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 90 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDF---QD-S-KDGL-AHRYKCVIINEANSLTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp CSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred ccceEEecHhhcCCcchHHHHHHHHHHHHhccccc---cc-c-cccc-CCCCeEEEEeCccccCHHHHHHHHHHHHhhcC
Confidence 1111111100 000012222222211000000 00 0 0001 1366799999998742 12222222211224
Q ss_pred CcEEEEEecChh-hhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhh-HHHHHHHHHHcCCCchHHHHH
Q 044755 283 GCKLLLTARDRN-VLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENREL-QSTATEVAQACKGLPIALTTI 353 (1079)
Q Consensus 283 gs~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~-~~~~~~i~~~~~glPlai~~~ 353 (1079)
+..+|++|.... +... ......+++.+++.++..+.+.+.+..... .-- .+.++.|++.++|.+-.+..+
T Consensus 164 ~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-QLETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-EECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 677888877542 2221 223368999999999999999988732111 011 245778899999987655443
No 188
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.96 E-value=4.7e-05 Score=83.90 Aligned_cols=182 Identities=14% Similarity=0.124 Sum_probs=104.2
Q ss_pred cCCccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC-EEEEEEeCCccCHHHHHHHHHH
Q 044755 151 RKGYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFD-LVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
|.....++|.+..++.+..++..++.+.+.++|+.|+||||+|+.+++...... +. .+..++.+.......+. +++.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~~~~ir-~~i~ 98 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN-YSNMVLELNASDDRGIDVVR-NQIK 98 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS-HHHHEEEECTTSCCSHHHHH-THHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-ccceEEEEcCcccccHHHHH-HHHH
Confidence 344556778888888888888877665589999999999999999998864211 11 12333333322222221 1111
Q ss_pred HhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEEEecChh-hhhh-cCCCceE
Q 044755 230 KLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLLTARDRN-VLFR-MGSQKNF 305 (1079)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~~~ 305 (1079)
.+.... ....+.+-++|+|+++... ..+.+...+.......++|++|.... +... ......+
T Consensus 99 ~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 99 DFASTR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp HHHHBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHHhhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 110000 0001346789999986532 22222222211223566777765432 1111 1223478
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchH
Q 044755 306 SIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIA 349 (1079)
Q Consensus 306 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 349 (1079)
.+.+++.++..+.+.+.+...... -..+..+.|++.++|-+--
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~-i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKLK-LSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCC-BCHHHHHHHHHHHTTCHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHH
Confidence 999999999999888877321111 1134577888888887753
No 189
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.89 E-value=0.00028 Score=79.15 Aligned_cols=182 Identities=16% Similarity=0.159 Sum_probs=104.7
Q ss_pred cCCccccccHHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCcc
Q 044755 151 RKGYEAFESRLCALKSVQNALT------------DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTL 218 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 218 (1079)
+.....++|++..++.+.+++. ....+-+.|+|.+|+|||++|+.+++... ...+.++++.-.
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~-----~~~~~v~~~~l~ 185 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN-----ATFFNISAASLT 185 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT-----CEEEEECSCCC-
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc-----CcEEEeeHHHhh
Confidence 3345678899999999888873 12246889999999999999999988753 123444444322
Q ss_pred CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc-------------cccccCCC---C-CCC
Q 044755 219 DIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD-------------LEAVGIPF---G-DDH 281 (1079)
Q Consensus 219 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~l---~-~~~ 281 (1079)
.. .. + ........++.......+.+|+||+++.... ...+...+ . ...
T Consensus 186 ~~--~~-------g------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 186 SK--YV-------G------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cc--cc-------c------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 10 00 0 0112233344444445678999999965310 00111100 0 112
Q ss_pred CCcEEEEEecChhhhh-h--cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCch-HHHHH
Q 044755 282 KGCKLLLTARDRNVLF-R--MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPI-ALTTI 353 (1079)
Q Consensus 282 ~gs~iivTtR~~~v~~-~--~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 353 (1079)
....||.||....... . -.....+.+...+.++-.+++...+...... -..+....|++.+.|..- ++..+
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP-LTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC-SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 2445666666532211 1 1233578899999999999999888432211 123457789999988654 44443
No 190
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.89 E-value=0.00056 Score=73.65 Aligned_cols=180 Identities=13% Similarity=0.119 Sum_probs=104.0
Q ss_pred CccccccHHHHHHHHHHHhcC------------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCH
Q 044755 153 GYEAFESRLCALKSVQNALTD------------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDI 220 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 220 (1079)
....++|.+..++.+.+++.. ...+.+.|+|++|+||||+|+.+++... ...+.++++.-..
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~l~~- 92 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS-----ATFLNISAASLTS- 92 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT-----CEEEEEESTTTSS-
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC-----CCeEEeeHHHHhh-
Confidence 445688999988888877631 2346889999999999999999998763 1234455543211
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcccc-------------cccc---CCCCC--CCC
Q 044755 221 KKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVDL-------------EAVG---IPFGD--DHK 282 (1079)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~-------------~~l~---~~l~~--~~~ 282 (1079)
.... ........+.......++.+|++|+++....- ..+. ..++. ...
T Consensus 93 -------------~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 93 -------------KYVG-DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp -------------SSCS-CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred -------------cccc-hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 0000 11122233344444467889999999653110 0010 01111 113
Q ss_pred CcEEEEEecChhhhhh---cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCch-HHHHH
Q 044755 283 GCKLLLTARDRNVLFR---MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPI-ALTTI 353 (1079)
Q Consensus 283 gs~iivTtR~~~v~~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 353 (1079)
+..||.||........ -.....+.+...+.++-..++...+...... -..+....|++.+.|.+- ++..+
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP-LDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC-SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 4566777775422111 1223568888889999899988877332111 113457789999999875 44333
No 191
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.89 E-value=0.00016 Score=79.08 Aligned_cols=169 Identities=12% Similarity=0.073 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcC--------------------CCCEEEEEEeC---
Q 044755 160 RLCALKSVQNALTDVNV-SIVGVYGMGGIGKTTLVKEVARQAREDK--------------------LFDLVVFSEVS--- 215 (1079)
Q Consensus 160 r~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~~~--- 215 (1079)
.++..+.+...+..++. ..+.++|+.|+|||++|+.+++...... |+|. .++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEeccccC
Confidence 35567777877776654 4789999999999999999998764321 2332 233322
Q ss_pred CccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCCCCCCCcEEEEEecCh
Q 044755 216 QTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIPFGDDHKGCKLLLTARDR 293 (1079)
Q Consensus 216 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~ 293 (1079)
....+.+ .+++.+.+.... ..+++-++|+|+++... ..+.+...+.....++.+|++|.+.
T Consensus 86 ~~~~i~~-ir~l~~~~~~~~----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 86 NTLGVDA-VREVTEKLNEHA----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SSBCHHH-HHHHHHHTTSCC----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCCHHH-HHHHHHHHhhcc----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 1222222 223333222110 02567889999998742 2233322232233466777777655
Q ss_pred h-hhhh-cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHH
Q 044755 294 N-VLFR-MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTT 352 (1079)
Q Consensus 294 ~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 352 (1079)
+ +... ......+++.+++.++..+.+.+... . ..+.+..+++.++|.|..+..
T Consensus 149 ~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~--~----~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 149 ERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT--M----SQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC--C----CHHHHHHHHHHTTTCHHHHHH
T ss_pred HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC--C----CHHHHHHHHHHcCCCHHHHHH
Confidence 3 2222 23345799999999999999988761 1 134567899999999976543
No 192
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.86 E-value=0.00038 Score=79.24 Aligned_cols=181 Identities=17% Similarity=0.190 Sum_probs=104.3
Q ss_pred CccccccHHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCH
Q 044755 153 GYEAFESRLCALKSVQNALT------------DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDI 220 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 220 (1079)
....++|.+..++.+.+++. ....+-|.++|++|+|||+||+.+++.... ...+.++.+.-
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~v~~~~l--- 204 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDL--- 204 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEEECCC-----
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC----CCEEEEeHHHH---
Confidence 44567888888888887763 123467899999999999999999987621 11233333221
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc-------------cccccCCCCC---CCCCc
Q 044755 221 KKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD-------------LEAVGIPFGD---DHKGC 284 (1079)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~l~~---~~~gs 284 (1079)
.... .+. . ......++......++.+|++|+++.... ...+...+.. ...+.
T Consensus 205 ---~~~~---~g~-----~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 205 ---VSKW---LGE-----S-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp ------------------C-CCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred ---Hhhh---cch-----H-HHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 1110 010 0 11123344444446789999999986410 1112222211 23456
Q ss_pred EEEEEecChhhhhh---cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCC-chHHHHH
Q 044755 285 KLLLTARDRNVLFR---MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGL-PIALTTI 353 (1079)
Q Consensus 285 ~iivTtR~~~v~~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~ 353 (1079)
.||.||........ -.....+.+...+.++-..+|..++...... .-......|++.+.|. +-.|..+
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS-LTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE-CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 67777765432211 1334578899999999999999887432111 1134567889999885 3344433
No 193
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.85 E-value=3.8e-05 Score=76.31 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=42.8
Q ss_pred CccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 153 GYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
....++||+.+++.+.+++.....+.+.|+|.+|+|||++|+.+++...
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456889999999999999876667789999999999999999998864
No 194
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.84 E-value=0.00021 Score=78.90 Aligned_cols=180 Identities=16% Similarity=0.189 Sum_probs=103.3
Q ss_pred CccccccHHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCH
Q 044755 153 GYEAFESRLCALKSVQNALT------------DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDI 220 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 220 (1079)
....++|.+..++.+.+++. ....+-|.++|++|+|||++|+.+++.... ..+.++.+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-----~~~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC-----EEEEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----CEEEeeHH-----
Confidence 34467788888888877662 012345889999999999999999998741 22333332
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc-------------cccccCCC---CCCCCCc
Q 044755 221 KKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD-------------LEAVGIPF---GDDHKGC 284 (1079)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~l---~~~~~gs 284 (1079)
++.... .. ........++......++.+|++|+++.... ...+...+ .....+.
T Consensus 119 -~l~~~~--------~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 119 -DLVSKW--------MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp -HHHSCC------------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred -HHhhhh--------cc-hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCe
Confidence 111100 00 1122233444444456889999999975321 11111111 1122355
Q ss_pred EEEEEecChhhhh---hcCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCC-chHHHHH
Q 044755 285 KLLLTARDRNVLF---RMGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGL-PIALTTI 353 (1079)
Q Consensus 285 ~iivTtR~~~v~~---~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~ 353 (1079)
.||.||....... .-.....+.+...+.++-.+++..++...... .-......|++.+.|. +-.|..+
T Consensus 189 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-~~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV-LTKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp EEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC-CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 6666776542211 11345678899999999999999888432211 0134467889999884 4334433
No 195
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00058 Score=74.76 Aligned_cols=173 Identities=15% Similarity=0.206 Sum_probs=103.0
Q ss_pred CccccccHHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccC
Q 044755 153 GYEAFESRLCALKSVQNALT----D---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLD 219 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 219 (1079)
...++.|-++.+++|.+.+. . ...+-|-++|++|+|||.||+++++..... .+.|+.+.-.+
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~s 220 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELVQ 220 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGSC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhhc
Confidence 44556777777777666543 1 235678899999999999999999987532 34454443211
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccCCCC--CCC
Q 044755 220 IKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD----------------LEAVGIPFG--DDH 281 (1079)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~l~--~~~ 281 (1079)
...+ .....+..++....+..+++|++|+++.... ...+...+. ...
T Consensus 221 --------------k~vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 221 --------------KYIG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp --------------SSTT-HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred --------------cccc-hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 0000 1122234445555557899999999986410 001111111 123
Q ss_pred CCcEEEEEecChhhhhh-----cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 282 KGCKLLLTARDRNVLFR-----MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 282 ~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
.+..||.||...+..+. ..-+..+.++.-+.++-.++|+.+.......++.. ...|++.+.|.-
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd--l~~lA~~t~G~S 354 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN--LRKVAEKMNGCS 354 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC--HHHHHHHCCSCC
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC--HHHHHHHCCCCC
Confidence 35556667765543321 23467899999999999999988874322222111 466788888764
No 196
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.79 E-value=0.00015 Score=81.12 Aligned_cols=194 Identities=10% Similarity=0.073 Sum_probs=102.0
Q ss_pred ccccccHHHHHHH---HHHHhcCCCc--eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeC----CccCHHHHH
Q 044755 154 YEAFESRLCALKS---VQNALTDVNV--SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVS----QTLDIKKIQ 224 (1079)
Q Consensus 154 ~~~~~gr~~~~~~---l~~~l~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~----~~~~~~~~~ 224 (1079)
...|+|++..++. +.+.+..... +.+.|+|++|+|||++|+.+++....... .+.+... ......+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP---FTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC---EEEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCC---cccccchhhhhcccchhHHH
Confidence 4578899887665 4555554433 58999999999999999999998753212 2233322 223344444
Q ss_pred HHHHHHhCC-C----------------------------cc--ccchHHH---HHHHHHHH-HcCC----cEEEEEeCCC
Q 044755 225 QEIAEKLGL-V----------------------------LE--EETGSRR---ASRLYERL-KKEE----KILIILDNIW 265 (1079)
Q Consensus 225 ~~i~~~l~~-~----------------------------~~--~~~~~~~---~~~l~~~l-~~~~----~~LlvlDdv~ 265 (1079)
.+....... . .. ....... ........ ..++ +.+|++|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 444333110 0 00 0001111 11111111 1233 3599999997
Q ss_pred Ccc--ccccccCCCCCCCCCcEEEEEecC-------------hhhhh-hcCCCceEeCCCCCHHHHHHHHHHHhcCCCCC
Q 044755 266 KCV--DLEAVGIPFGDDHKGCKLLLTARD-------------RNVLF-RMGSQKNFSIDILNEEEAWRLFKLMADDHVEN 329 (1079)
Q Consensus 266 ~~~--~~~~l~~~l~~~~~gs~iivTtR~-------------~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 329 (1079)
... ....+...+...... .++++|.. ..+.. .......+.+.+++.++..+++.+++.....
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~- 277 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV- 277 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC-
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 642 222222222222222 34444431 00101 1122245899999999999999988732111
Q ss_pred hhhHHHHHHHHHHcC-CCchHHHH
Q 044755 330 RELQSTATEVAQACK-GLPIALTT 352 (1079)
Q Consensus 330 ~~~~~~~~~i~~~~~-glPlai~~ 352 (1079)
.--.+..+.|++.+. |.|-.+..
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHH
Confidence 122456778888887 77654443
No 197
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.76 E-value=0.00015 Score=79.39 Aligned_cols=165 Identities=16% Similarity=0.175 Sum_probs=94.1
Q ss_pred HHHHHHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccch
Q 044755 163 ALKSVQNALTDV--NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETG 240 (1079)
Q Consensus 163 ~~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 240 (1079)
....+..+...+ ....+.|+|++|+||||||+.+++..... . ..++++++. ++..++...+...
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~-~~~~~i~~~------~~~~~~~~~~~~~------ 87 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-G-YRVIYSSAD------DFAQAMVEHLKKG------ 87 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-T-CCEEEEEHH------HHHHHHHHHHHHT------
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-C-CEEEEEEHH------HHHHHHHHHHHcC------
Confidence 344455555443 34678999999999999999999887532 1 234555543 2333333322100
Q ss_pred HHHHHHHHHHHHcCCcEEEEEeCCCCccc---c-ccccCCCCC-CCCCcEEEEEecChh---------hhhhcCCCceEe
Q 044755 241 SRRASRLYERLKKEEKILIILDNIWKCVD---L-EAVGIPFGD-DHKGCKLLLTARDRN---------VLFRMGSQKNFS 306 (1079)
Q Consensus 241 ~~~~~~l~~~l~~~~~~LlvlDdv~~~~~---~-~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~ 306 (1079)
....+...+. +.-+|++||+..... + +.+...+.. ...|.+||+||.... ...++....+++
T Consensus 88 --~~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~ 163 (324)
T 1l8q_A 88 --TINEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVE 163 (324)
T ss_dssp --CHHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEE
T ss_pred --cHHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEE
Confidence 0112223332 467999999976431 1 122111110 123567888886431 222334446799
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCch
Q 044755 307 IDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPI 348 (1079)
Q Consensus 307 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 348 (1079)
+.+ +.++..+++...+..... .--.++.+.|++.+ |..-
T Consensus 164 l~~-~~~e~~~il~~~~~~~~~-~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 164 IEL-DNKTRFKIIKEKLKEFNL-ELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp CCC-CHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHC-SSHH
T ss_pred eCC-CHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhC-CCHH
Confidence 999 999999999988732111 11145577888888 6653
No 198
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.75 E-value=0.00058 Score=73.51 Aligned_cols=174 Identities=12% Similarity=0.163 Sum_probs=100.4
Q ss_pred ccccccHHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCH
Q 044755 154 YEAFESRLCALKSVQNALTD-------------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDI 220 (1079)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 220 (1079)
...++|.+..++++.+++.. ...+.+.++|++|+|||++|+.+++.... ..+.++ .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v~------~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIK------G 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEEC------H
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEEE------h
Confidence 34577888777777666531 33567899999999999999999987641 123332 2
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccCCCC--CCCC
Q 044755 221 KKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD----------------LEAVGIPFG--DDHK 282 (1079)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~l~--~~~~ 282 (1079)
.++..... +.. ......++.......+.+|++|+++.... ...+...+. ....
T Consensus 83 ~~l~~~~~---g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELLTMWF---GES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHHHHH---TTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHHhhhc---Cch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 23332221 111 12233444554446789999999974210 011111110 1223
Q ss_pred CcEEEEEecChhhhhh--c---CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchH
Q 044755 283 GCKLLLTARDRNVLFR--M---GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIA 349 (1079)
Q Consensus 283 gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 349 (1079)
+..||.||...+.... . .-...+.+...+.++-.+++...+.......+. ....+++.+.|.|-+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~--~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc--hHHHHHHHcCCCCHH
Confidence 5677777775533221 1 234579999999999999998887332111111 134566677777654
No 199
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.68 E-value=0.00018 Score=82.60 Aligned_cols=149 Identities=12% Similarity=0.167 Sum_probs=86.5
Q ss_pred CccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCC---C-C-EEEEEEeCCccCHHHHHHHH
Q 044755 153 GYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKL---F-D-LVVFSEVSQTLDIKKIQQEI 227 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~-~~~wv~~~~~~~~~~~~~~i 227 (1079)
...+++||+.+++.+++.+......-+.++|.+|+|||++|+.+++....... . + .++.++++.
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~----------- 246 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT----------- 246 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-----------
Confidence 34568999999999999997655566789999999999999999988642110 0 1 122333320
Q ss_pred HHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccccccccCCCCCCCCCcEEEEEecChhhhh------h-cC
Q 044755 228 AEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVDLEAVGIPFGDDHKGCKLLLTARDRNVLF------R-MG 300 (1079)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~------~-~~ 300 (1079)
...+ ........+...+...++.+|++| ...+....+...+.. ...++|.+|....... . ..
T Consensus 247 -~~~g------~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 247 -KYRG------EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred -cccc------hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 0000 001123344555555678899999 222222223333322 2356666666543111 0 11
Q ss_pred CCceEeCCCCCHHHHHHHHHHHh
Q 044755 301 SQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 301 ~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
....+.++..+.++...++...+
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTT
T ss_pred hCccceeCCCCHHHHHHHHHHHH
Confidence 22369999999999999999876
No 200
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00077 Score=74.78 Aligned_cols=172 Identities=15% Similarity=0.201 Sum_probs=100.9
Q ss_pred ccccccHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCH
Q 044755 154 YEAFESRLCALKSVQNALT-------------DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDI 220 (1079)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 220 (1079)
..++.|-++.+++|.+.+. -...+-|.++|++|+|||+||+++++..... .+.++.+.-.+
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~s- 281 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELVQ- 281 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhhc-
Confidence 3456777777777766542 1346788899999999999999999987532 34444432111
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccCCCC--CCCC
Q 044755 221 KKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD----------------LEAVGIPFG--DDHK 282 (1079)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~l~--~~~~ 282 (1079)
...+ .....+..++.......+++|++|+++.... ...+...+. ....
T Consensus 282 -------------k~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 -------------KYVG-EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp -------------CSSS-HHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred -------------ccCC-HHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 0000 1112233444455556899999999986410 000111110 1223
Q ss_pred CcEEEEEecChhhhhh-----cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 283 GCKLLLTARDRNVLFR-----MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 283 gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
+..||.||...+.... -.-+..++++..+.++-.++|+.+........++. ...|++.+.|.-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd--l~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR--WELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHCCCCC
Confidence 4456667754433221 13467899999999999999988874322111111 456788888863
No 201
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00086 Score=74.73 Aligned_cols=173 Identities=18% Similarity=0.264 Sum_probs=101.5
Q ss_pred CccccccHHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccC
Q 044755 153 GYEAFESRLCALKSVQNALT----D---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLD 219 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 219 (1079)
...++.|-++.+++|.+.+. . ...+-|.++|++|+|||+||+++++..... .+.++.+.-.+
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s 253 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD 253 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc
Confidence 34556777777777666543 1 235788999999999999999999987532 34455443211
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccCCC--CCCC
Q 044755 220 IKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD----------------LEAVGIPF--GDDH 281 (1079)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~l--~~~~ 281 (1079)
...+ ........++.......+++|++|+++.... ...+...+ ..+.
T Consensus 254 --------------k~~G-ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 --------------KYIG-ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp --------------SSSS-HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred --------------ccch-HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 0000 1112233444444556899999999985310 00111111 1123
Q ss_pred CCcEEEEEecChhhhhh--cC---CCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 282 KGCKLLLTARDRNVLFR--MG---SQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 282 ~gs~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
.+..||.||...+.... .. -+..++++.-+.++-.++|+.+........+.. ...|++.+.|.-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d--l~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD--FEAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC--HHHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC--HHHHHHhCCCCC
Confidence 45667778876544332 12 245789999999999999988773321111111 456777887754
No 202
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.66 E-value=2e-05 Score=78.20 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=62.0
Q ss_pred hhccCCcceEEEecCc-cccc-----cCccccccccccEEeccccccCC--c----ccccCCcccceeeccCCcCcc---
Q 044755 549 FFTGMRKLRVVDFTRM-QLLL-----LPSSIDLLVNLQTLCLVECMLDD--I----AIIGKLKNLEILSFWGSVIVM--- 613 (1079)
Q Consensus 549 ~~~~l~~Lr~L~L~~~-~i~~-----lp~~i~~L~~L~~L~L~~~~l~~--~----~~i~~L~~L~~L~l~~~~l~~--- 613 (1079)
.+...+.|++|+|++| .+.. +...+...++|++|+|++|.+.+ . ..+...++|++|+|++|.+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3456667777777777 6542 44445556677777777777654 1 334444667777777776543
Q ss_pred --cChhhccCCcccEEcc--cccccccccCh----hhhhcccccceeecccccc
Q 044755 614 --LPEELGHLTKLRQLDL--SNCFKLKVIAP----NVISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 614 --lp~~i~~L~~L~~L~l--~~~~~l~~~~~----~~l~~L~~L~~L~l~~~~~ 659 (1079)
+...+...++|++|++ ++| .+..... ..+...++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3444555666777776 444 3332111 1133345666666665544
No 203
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.0011 Score=72.85 Aligned_cols=174 Identities=13% Similarity=0.181 Sum_probs=100.6
Q ss_pred CCccccccHHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCcc
Q 044755 152 KGYEAFESRLCALKSVQNALT----D---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTL 218 (1079)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 218 (1079)
....++.|-++.+++|.+.+. . ...+-|-++|++|+|||.||+++++..... .+.++.+.-.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~l~ 253 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSELI 253 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGGGC
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHHhh
Confidence 344566777777777665543 1 235789999999999999999999987532 2344433211
Q ss_pred CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccCCC--CCC
Q 044755 219 DIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD----------------LEAVGIPF--GDD 280 (1079)
Q Consensus 219 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~l--~~~ 280 (1079)
+ ...+ .....+..++....+..+++|++|+++.... ...+...+ ...
T Consensus 254 s--------------k~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 254 Q--------------KYLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp C--------------SSSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred h--------------ccCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 0 0000 1122234444555556899999999875310 00111111 012
Q ss_pred CCCcEEEEEecChhhhhh--c---CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 281 HKGCKLLLTARDRNVLFR--M---GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 281 ~~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
..+..||.||...+..+. . .-+..+.++.-+.++-.++|+.+.......++.. ...|++.+.|.-
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd--l~~LA~~T~GfS 388 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN--LETLVTTKDDLS 388 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC--HHHHHHHCCSCC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCC
Confidence 335566667766554332 2 2245789999999999999988874322111111 456777887753
No 204
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.64 E-value=0.00012 Score=91.03 Aligned_cols=157 Identities=13% Similarity=0.164 Sum_probs=88.4
Q ss_pred CCccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCC-----CCEEEEEEeCCccCHHHHHHH
Q 044755 152 KGYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKL-----FDLVVFSEVSQTLDIKKIQQE 226 (1079)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~~~~~~~~~~~~~ 226 (1079)
....+++||++++.++++.+......-+.++|.+|+||||+|+.+++....... -..+++++++.-..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 345578999999999999998665566789999999999999999988643110 12244444432110
Q ss_pred HHHHhCCCccccchHHHHHHHHHHHHc-CCcEEEEEeCCCCcc-------cccc---ccCCCCCCCCCcEEEEEecChhh
Q 044755 227 IAEKLGLVLEEETGSRRASRLYERLKK-EEKILIILDNIWKCV-------DLEA---VGIPFGDDHKGCKLLLTARDRNV 295 (1079)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~-------~~~~---l~~~l~~~~~gs~iivTtR~~~v 295 (1079)
+.... .........+...+.. +++.+|++|++.... .++. +...+ .. .+..+|.+|.....
T Consensus 240 -----g~~~~-g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~~-~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 -----GAKYR-GEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-AR-GELRLIGATTLDEY 311 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-HT-TCCCEEEEECHHHH
T ss_pred -----cCccc-hHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-hC-CCeEEEEecCchHH
Confidence 00000 0112233444555543 378999999997642 0111 11111 11 23446655554332
Q ss_pred -----hhhc-CCCceEeCCCCCHHHHHHHHHHHh
Q 044755 296 -----LFRM-GSQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 296 -----~~~~-~~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
...+ .....+.+++++.++..+++....
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 1111 112358999999999999997654
No 205
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00041 Score=77.27 Aligned_cols=175 Identities=13% Similarity=0.193 Sum_probs=101.0
Q ss_pred cCCccccccHHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc
Q 044755 151 RKGYEAFESRLCALKSVQNALT----D---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT 217 (1079)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 217 (1079)
.....++.|-++.+++|.+.+. . ...+-|-++|++|+|||.||+++++..... .+.++.+.-
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l 251 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQL 251 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGG
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhh
Confidence 3345567788888887776643 1 235688999999999999999999987522 344444321
Q ss_pred cCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc-------c---------cccccCCCC--C
Q 044755 218 LDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV-------D---------LEAVGIPFG--D 279 (1079)
Q Consensus 218 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-------~---------~~~l~~~l~--~ 279 (1079)
.+ ...+ ........++.......+++|++|+++... . ...+...+. .
T Consensus 252 ~~--------------~~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 252 VQ--------------MYIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp CS--------------SCSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred hh--------------cccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 11 0000 111223334444444578999999986420 0 001111111 1
Q ss_pred CCCCcEEEEEecChhhhhh-c----CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 280 DHKGCKLLLTARDRNVLFR-M----GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 280 ~~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
...+.-||.||...+.... + .-+..++++..+.++-.++|+.+.......+++. ...|++.+.|.-
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd--l~~lA~~t~G~s 387 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN--WQELARSTDEFN 387 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC--HHHHHHHCSSCC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCC
Confidence 2234556667766544332 1 2346789999999999999987773211111111 456788888753
No 206
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.52 E-value=7e-05 Score=73.93 Aligned_cols=117 Identities=14% Similarity=0.132 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCcc
Q 044755 160 RLCALKSVQNALTD---VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLE 236 (1079)
Q Consensus 160 r~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 236 (1079)
+...++.+.+++.+ .....+.|+|+.|+||||||+.+++.......+. +++++ ..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~- 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGK- 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCch-
Confidence 44555666665543 2347899999999999999999998875332222 23333 4445544443322110
Q ss_pred ccchHHHHHHHHHHHHcCCcEEEEEeCCCC--ccccc--cccCCCCC-CCCCcEEEEEecCh
Q 044755 237 EETGSRRASRLYERLKKEEKILIILDNIWK--CVDLE--AVGIPFGD-DHKGCKLLLTARDR 293 (1079)
Q Consensus 237 ~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~--~~~~~--~l~~~l~~-~~~gs~iivTtR~~ 293 (1079)
.. .+.+.+. +.-+||+||++. ...|. .+...+.. ...|..||+||...
T Consensus 91 ---~~----~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 91 ---DT----KFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp ---CS----HHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ---HH----HHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 00 2333343 566899999984 23332 11111111 12467888888754
No 207
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.50 E-value=8.9e-05 Score=77.19 Aligned_cols=60 Identities=25% Similarity=0.277 Sum_probs=31.7
Q ss_pred cCCcceEEEecCcccccc---CccccccccccEEeccccccCCcccccCCc--ccceeeccCCcC
Q 044755 552 GMRKLRVVDFTRMQLLLL---PSSIDLLVNLQTLCLVECMLDDIAIIGKLK--NLEILSFWGSVI 611 (1079)
Q Consensus 552 ~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~l~~~~~i~~L~--~L~~L~l~~~~l 611 (1079)
+++.|+.|+|++|.+..+ |..+..+++|++|+|++|.++....+..+. +|++|++++|.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcC
Confidence 455566666666655543 233455566666666666555533333333 555555555544
No 208
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.43 E-value=0.0017 Score=79.93 Aligned_cols=156 Identities=13% Similarity=0.197 Sum_probs=93.8
Q ss_pred CccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCEEEE-EEeCCccCHHHHHHHH
Q 044755 153 GYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKL----FDLVVF-SEVSQTLDIKKIQQEI 227 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~w-v~~~~~~~~~~~~~~i 227 (1079)
....++||+.+++++++.+......-+.++|.+|+|||++|+.+++....... .+..+| ++.+.-.
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~--------- 254 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL--------- 254 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh---------
Confidence 44568999999999999998766667889999999999999999987643211 233333 2211100
Q ss_pred HHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--------c---cccccCCCCCCCCCcEEEEEecChhhh
Q 044755 228 AEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--------D---LEAVGIPFGDDHKGCKLLLTARDRNVL 296 (1079)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--------~---~~~l~~~l~~~~~gs~iivTtR~~~v~ 296 (1079)
.+.. ...........+.+.+.+.++.+|++||++... . ...+...+ . ..+.++|.+|...+..
T Consensus 255 ---~~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l-~-~~~~~~I~at~~~~~~ 328 (758)
T 1r6b_X 255 ---AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-S-SGKIRVIGSTTYQEFS 328 (758)
T ss_dssp ---CCCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS-S-SCCCEEEEEECHHHHH
T ss_pred ---cccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH-h-CCCeEEEEEeCchHHh
Confidence 0000 011122234445555554567999999998641 1 11232222 2 2345677776654322
Q ss_pred hhc-------CCCceEeCCCCCHHHHHHHHHHHh
Q 044755 297 FRM-------GSQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 297 ~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
... .....+.++..+.++..+++....
T Consensus 329 ~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 111 111268999999999999987665
No 209
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.0029 Score=70.36 Aligned_cols=173 Identities=17% Similarity=0.215 Sum_probs=95.8
Q ss_pred CccccccHHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccC
Q 044755 153 GYEAFESRLCALKSVQNALT----D---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLD 219 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 219 (1079)
...++.|-++.+++|.+.+. . ...+-|.++|++|+|||++|+++++..... .+.++.+.-.+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~ 244 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH 244 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhc
Confidence 44567788887777766553 1 235678999999999999999999987522 34455443211
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--------c--------cccccCCCC--CCC
Q 044755 220 IKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--------D--------LEAVGIPFG--DDH 281 (1079)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--------~--------~~~l~~~l~--~~~ 281 (1079)
...+ .....+..++.......+++|++|+++... . ...+...+. ...
T Consensus 245 --------------~~~G-e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 245 --------------KYLG-EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp --------------SSCS-HHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred --------------cccc-hhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 0000 111223444555555689999999986421 0 011111110 123
Q ss_pred CCcEEEEEecChhhhhh--c---CCCceEeCCCC-CHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 282 KGCKLLLTARDRNVLFR--M---GSQKNFSIDIL-NEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 282 ~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L-~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
.|..||.||...+.... . .-+..+++..+ +.++-..+|+.+.......++.. ...|++.+.|.-
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d--l~~lA~~t~G~s 379 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD--LDSLIIRNDSLS 379 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC--HHHHHHHTTTCC
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC--HHHHHHHCCCCC
Confidence 45567777765543221 1 23457888655 45555667766663221111111 456777887753
No 210
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.42 E-value=0.00011 Score=80.94 Aligned_cols=129 Identities=18% Similarity=0.169 Sum_probs=73.7
Q ss_pred CCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccc-cCcccc--ccccccEEecccc--c------cCCc-
Q 044755 525 ECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLL-LPSSID--LLVNLQTLCLVEC--M------LDDI- 592 (1079)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~--~L~~L~~L~L~~~--~------l~~~- 592 (1079)
.+++|+.|.+.++... .+ +. + .+.+|+.|++..+.+.. -...++ .+++|++|+|+.+ . +...
T Consensus 170 ~~P~L~~L~L~g~~~l-~l--~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SI--GK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp TCTTCCEEEEECCBTC-BC--CS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred cCCCCcEEEEeCCCCc-ee--cc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 4577788877765211 22 22 2 26778888887776542 112233 5778888877531 1 1111
Q ss_pred ccc--cCCcccceeeccCCcCcc-cChhh---ccCCcccEEcccccccccccC----hhhhhcccccceeeccccccc
Q 044755 593 AII--GKLKNLEILSFWGSVIVM-LPEEL---GHLTKLRQLDLSNCFKLKVIA----PNVISRLVRLEELYMSNCFVE 660 (1079)
Q Consensus 593 ~~i--~~L~~L~~L~l~~~~l~~-lp~~i---~~L~~L~~L~l~~~~~l~~~~----~~~l~~L~~L~~L~l~~~~~~ 660 (1079)
..+ +.+++|++|++++|.+.. .+..+ ..+++|++|+|+.| .+.... ...+..+++|+.|+++.|.+.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 111 346788888888776542 12222 24678888888776 454421 111356788888888877654
No 211
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.41 E-value=5.7e-05 Score=78.62 Aligned_cols=94 Identities=22% Similarity=0.271 Sum_probs=52.3
Q ss_pred EEecCccccccCccc----cccccccEEeccccccCCc----ccccCCcccceeeccCCcCcccChhhccCC--cccEEc
Q 044755 559 VDFTRMQLLLLPSSI----DLLVNLQTLCLVECMLDDI----AIIGKLKNLEILSFWGSVIVMLPEELGHLT--KLRQLD 628 (1079)
Q Consensus 559 L~L~~~~i~~lp~~i----~~L~~L~~L~L~~~~l~~~----~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~--~L~~L~ 628 (1079)
++++.|....++..+ .++++|++|+|++|.++.+ ..++++++|++|+|++|.+..+ ..+..+. +|++|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEE
Confidence 445555443333222 4567777777777777652 3344677777777777766665 3344444 677777
Q ss_pred ccccccccccC------hhhhhcccccceee
Q 044755 629 LSNCFKLKVIA------PNVISRLVRLEELY 653 (1079)
Q Consensus 629 l~~~~~l~~~~------~~~l~~L~~L~~L~ 653 (1079)
+++|.-...+| ...+..+++|+.|+
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 77663222222 12244555555554
No 212
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.40 E-value=5e-05 Score=71.82 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=33.6
Q ss_pred ccccHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 156 AFESRLCALKSVQNALT--DVNVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
.++|+...++++.+.+. .....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 35688888888877764 2223456799999999999999998764
No 213
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.32 E-value=0.00098 Score=76.33 Aligned_cols=176 Identities=14% Similarity=0.191 Sum_probs=100.0
Q ss_pred ccccccHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCH
Q 044755 154 YEAFESRLCALKSVQNALT-------------DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDI 220 (1079)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 220 (1079)
...++|.+..++++.+++. ....+-|.|+|.+|+|||++|+.+++... . ..+.++++.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~---~fv~vn~~~---- 273 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--A---FFFLINGPE---- 273 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--S---EEEEEEHHH----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--C---CEEEEEchH----
Confidence 3457888888888877764 13345789999999999999999988753 1 234444321
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc-------------ccccccCCCC--CCCCCcE
Q 044755 221 KKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV-------------DLEAVGIPFG--DDHKGCK 285 (1079)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-------------~~~~l~~~l~--~~~~gs~ 285 (1079)
+. ..+ .. ........++.....+++.+|+||+++... ....+...+. ....+.+
T Consensus 274 --l~----~~~----~g-~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 274 --IM----SKL----AG-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp --HH----TSC----TT-HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred --hh----hhh----cc-hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 11 000 00 011122334444445678999999984321 0011111111 1223456
Q ss_pred EEEEecChhhh-hh----cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCC-chHHH
Q 044755 286 LLLTARDRNVL-FR----MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGL-PIALT 351 (1079)
Q Consensus 286 iivTtR~~~v~-~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~ 351 (1079)
||.||...... .. ......+.+...+.++-.+++..++.......+ ....++++.+.|. +-.+.
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHVGADLA 412 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch--hhHHHHHHHccCCcHHHHH
Confidence 66677655321 11 123457999999999999999998843221111 1135577777775 43333
No 214
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.32 E-value=0.0026 Score=78.13 Aligned_cols=149 Identities=13% Similarity=0.164 Sum_probs=86.8
Q ss_pred CccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCE-EEEEEeCCccCHHHHHHHH
Q 044755 153 GYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKL----FDL-VVFSEVSQTLDIKKIQQEI 227 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~-~~wv~~~~~~~~~~~~~~i 227 (1079)
...+++||+.++++++..+......-+.++|.+|+|||++|+.+++....... .++ .+.++.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 44568999999999999998655566889999999999999999988632110 011 122222
Q ss_pred HHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccccccccCCCCCCCCCcEEEEEecChhhhh------h-cC
Q 044755 228 AEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVDLEAVGIPFGDDHKGCKLLLTARDRNVLF------R-MG 300 (1079)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~------~-~~ 300 (1079)
+....+. .......+.......++.+|++| ........+...+. ....++|.||....... . ..
T Consensus 245 ----g~~~~G~-~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~r 315 (758)
T 3pxi_A 245 ----GTKYRGE-FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred ----cccccch-HHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHh
Confidence 0000000 11123344555555678899999 22222222333332 22456777666554111 0 11
Q ss_pred CCceEeCCCCCHHHHHHHHHHHh
Q 044755 301 SQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 301 ~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
....+.++..+.++..+++....
T Consensus 316 Rf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 316 RFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTT
T ss_pred hCcEEEeCCCCHHHHHHHHHHHH
Confidence 12469999999999999999766
No 215
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.29 E-value=0.00074 Score=72.27 Aligned_cols=145 Identities=14% Similarity=0.094 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhh--cCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCcc
Q 044755 160 RLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQARE--DKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGLVLE 236 (1079)
Q Consensus 160 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~ 236 (1079)
.++.++.+...+..++.+...++|+.|+||||+|+.+.+.... ..+.+. .+++.+. ...+.++ +++.+.+.....
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p~ 79 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSPE 79 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCCS
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhccc
Confidence 3445667777777666788999999999999999999876321 123443 4555443 3333333 334444321110
Q ss_pred ccchHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEEEecCh-hhhhhcCCCceEeCCCCCHH
Q 044755 237 EETGSRRASRLYERLKKEEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLTARDR-NVLFRMGSQKNFSIDILNEE 313 (1079)
Q Consensus 237 ~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~l~~L~~~ 313 (1079)
.+++-++|+|+++.. ...+.+...+-.....+.+|++|.+. .+....... .+++.+++++
T Consensus 80 ----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~ 142 (305)
T 2gno_A 80 ----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPK 142 (305)
T ss_dssp ----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCH
T ss_pred ----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHH
Confidence 146778999999864 23333333332333466777766544 333333334 8999999999
Q ss_pred HHHHHHHHHh
Q 044755 314 EAWRLFKLMA 323 (1079)
Q Consensus 314 ~~~~lf~~~~ 323 (1079)
+..+.+.+.+
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 216
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.27 E-value=0.0018 Score=73.33 Aligned_cols=172 Identities=16% Similarity=0.235 Sum_probs=97.4
Q ss_pred ccccccHHHHHHHHHHH---hcCC---------CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHH
Q 044755 154 YEAFESRLCALKSVQNA---LTDV---------NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIK 221 (1079)
Q Consensus 154 ~~~~~gr~~~~~~l~~~---l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 221 (1079)
..+++|.++.++++.+. +... -.+-|.++|++|+|||+||+.++..... . .+.++++.-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~--~---f~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV--P---FFHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC--C---EEEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC--C---eeeCCHHHHHHH-
Confidence 34567777766555444 3321 1245889999999999999999987642 1 244444432110
Q ss_pred HHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccCCCC--CCCCC
Q 044755 222 KIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD----------------LEAVGIPFG--DDHKG 283 (1079)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~l~--~~~~g 283 (1079)
... ........++.......+.+|++|+++.... ...+...+. ....+
T Consensus 89 -------------~~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 -------------FVG-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp -------------CTT-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred -------------Hhc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 000 0112233444444456889999999965310 111111110 11235
Q ss_pred cEEEEEecChhhhhh--c---CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 284 CKLLLTARDRNVLFR--M---GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 284 s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
..||.||...+.... . .-...+.++..+.++-.++++.++......++.. ...|++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~--l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN--LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh--HHHHHHhcCCCc
Confidence 677777776654321 2 2234789999998888888887774322111111 344788888876
No 217
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.26 E-value=0.00018 Score=71.17 Aligned_cols=117 Identities=13% Similarity=0.041 Sum_probs=81.5
Q ss_pred CccccccccccEEecccc-ccCC------cccccCCcccceeeccCCcCcc-----cChhhccCCcccEEcccccccccc
Q 044755 570 PSSIDLLVNLQTLCLVEC-MLDD------IAIIGKLKNLEILSFWGSVIVM-----LPEELGHLTKLRQLDLSNCFKLKV 637 (1079)
Q Consensus 570 p~~i~~L~~L~~L~L~~~-~l~~------~~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~ 637 (1079)
...+...++|++|+|++| .+.. ...+...++|++|+|++|.+.. +...+...++|++|+|++| .+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence 344567889999999999 8765 2456677899999999997753 4455667788999999987 5554
Q ss_pred cC----hhhhhcccccceeec--ccccccccCCCCCchhhhcchhhhccCCCCcEEEEEeeCC
Q 044755 638 IA----PNVISRLVRLEELYM--SNCFVEWDDEGPNSERINARLDELMHLPRLTTLEVHVKND 694 (1079)
Q Consensus 638 ~~----~~~l~~L~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 694 (1079)
.. ...+...++|++|++ ++|.+. ..........+...++|+.|+++.+.+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~-------~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLG-------NNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCC-------HHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCC-------HHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 21 123556678999999 667654 111223445666777888888876654
No 218
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.22 E-value=0.0064 Score=66.32 Aligned_cols=172 Identities=17% Similarity=0.153 Sum_probs=92.7
Q ss_pred CCccccccHHHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHH
Q 044755 152 KGYEAFESRLCALKSVQNALTD-----VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQE 226 (1079)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 226 (1079)
.....++|.+..++.+...+.. .....+.++|+.|+||||||+.++...... | ...+..-.....++
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~---~~~sg~~~~~~~~l--- 93 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--I---HVTSGPVLVKQGDM--- 93 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--E---EEEETTTCCSHHHH---
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEechHhcCHHHH---
Confidence 3445677877777776655542 234679999999999999999999987421 1 11111111111111
Q ss_pred HHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCC---------CCC---------CCcEE
Q 044755 227 IAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIPFG---------DDH---------KGCKL 286 (1079)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~---------~~~---------~gs~i 286 (1079)
..+...+ .++-++++|++.... ..+.+...+. .+. ....+
T Consensus 94 ------------------~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 94 ------------------AAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ------------------HHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ------------------HHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 1111111 234566778775431 1111110000 000 01122
Q ss_pred E-EEecChhhhhhc--CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCchHHHH
Q 044755 287 L-LTARDRNVLFRM--GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLPIALTT 352 (1079)
Q Consensus 287 i-vTtR~~~v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 352 (1079)
+ .|++.......+ .....+.+++.+.++-.+++.+.+..... ....+.+..|+++++|.|-.+..
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHH
Confidence 2 344433222211 22346899999999999999988732111 12246689999999999965443
No 219
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.18 E-value=0.0022 Score=69.43 Aligned_cols=46 Identities=26% Similarity=0.334 Sum_probs=36.3
Q ss_pred ccccHHHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 156 AFESRLCALKSVQNALTD--------------VNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.++|++..++.+..++.. .....+.++|.+|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 367888888888776643 2345678999999999999999998763
No 220
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.09 E-value=0.00076 Score=73.19 Aligned_cols=104 Identities=17% Similarity=0.249 Sum_probs=59.1
Q ss_pred cccHHHHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHH
Q 044755 157 FESRLCALKSVQNALTDV---------NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEI 227 (1079)
Q Consensus 157 ~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 227 (1079)
++|.+..++.+...+... ....+.++|.+|+|||++|+.+++..... -...+.++++....... ...+
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~-~~~l 95 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA-VSRL 95 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH-HHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc-HHHh
Confidence 567777777777766521 13589999999999999999999876421 12345666654332211 1111
Q ss_pred HHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 044755 228 AEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC 267 (1079)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 267 (1079)
++....... ......+...+.....-++++|+++..
T Consensus 96 ---~g~~~~~~~-~~~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 96 ---IGAPPGYVG-YEEGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp ---HCCCTTSTT-TTTCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred ---cCCCCcccc-ccccchHHHHHHhCCCeEEEEeChhhc
Confidence 221111000 000012333444445679999999764
No 221
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.08 E-value=0.0015 Score=65.62 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhcCC----CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCc
Q 044755 160 RLCALKSVQNALTDV----NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVL 235 (1079)
Q Consensus 160 r~~~~~~l~~~l~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 235 (1079)
+...++.+.+++... ....+.|+|.+|+|||+||+.+++..... ...++|++++ ++...+......
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhcc--
Confidence 334555666666532 12688999999999999999999887532 3446666553 344444332211
Q ss_pred cccchHHHHHHHHHHHHcCCcEEEEEeCCCCc--ccccc--ccC-CCCCC-CCCcEEEEEecCh
Q 044755 236 EEETGSRRASRLYERLKKEEKILIILDNIWKC--VDLEA--VGI-PFGDD-HKGCKLLLTARDR 293 (1079)
Q Consensus 236 ~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~--l~~-~l~~~-~~gs~iivTtR~~ 293 (1079)
.. ...+...+.+ .-+||+||++.. ..|.. +.. .+... ..+.++|+||...
T Consensus 104 --~~----~~~~~~~~~~--~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 104 --QT----MNEKLDYIKK--VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp --CC----CHHHHHHHHH--SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred --ch----HHHHHHHhcC--CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 11 1222333432 239999999653 33432 111 11111 2355788888754
No 222
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.08 E-value=0.0074 Score=63.12 Aligned_cols=176 Identities=18% Similarity=0.214 Sum_probs=94.1
Q ss_pred CccccccHHHHHHHHHHH---hcC---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCH
Q 044755 153 GYEAFESRLCALKSVQNA---LTD---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDI 220 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~---l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 220 (1079)
....++|.+..++++.+. +.. ...+-+.|+|++|+||||+|+.+++.... . .+.++.+.-.+.
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~---~~~i~~~~~~~~ 84 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--P---FFTISGSDFVEM 84 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC--C---EEEECSCSSTTS
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--C---EEEEeHHHHHHH
Confidence 345677877666655443 332 11345889999999999999999987642 2 244443321110
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccCCCC--CCCC
Q 044755 221 KKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD----------------LEAVGIPFG--DDHK 282 (1079)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~l~--~~~~ 282 (1079)
... ........+++......+.++++|+++.... ...+...+. ....
T Consensus 85 --------------~~~-~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 85 --------------FVG-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp --------------CCC-CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred --------------hhh-hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 000 1112233444444445678999999843210 001100000 1223
Q ss_pred CcEEEEEecChhhh-hh-c---CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC-CchHH
Q 044755 283 GCKLLLTARDRNVL-FR-M---GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKG-LPIAL 350 (1079)
Q Consensus 283 gs~iivTtR~~~v~-~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai 350 (1079)
+..||.||...+.. .. . .-...+.++..+.++-.+++..+.......++. ....+++.+.| .+--+
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl 221 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADL 221 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHH
Confidence 45677777655322 11 1 224578888889988888888776332111111 13456777777 55333
No 223
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.07 E-value=0.057 Score=60.42 Aligned_cols=120 Identities=12% Similarity=0.195 Sum_probs=72.7
Q ss_pred cccEEEecCCCCcccccCCcchhccCCcceEEEecCcc---ccccCc-cccccccccEEeccccccCC--cccccCCccc
Q 044755 528 RLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQ---LLLLPS-SIDLLVNLQTLCLVECMLDD--IAIIGKLKNL 601 (1079)
Q Consensus 528 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~---i~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L 601 (1079)
.|+++.+... ...+ ....|.++.+|+.+.+..+. ++.++. .+..+.+|+.+.+..+ +.. ...+..+.+|
T Consensus 65 ~L~sI~iP~s--vt~I--g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L 139 (394)
T 4gt6_A 65 VLTSVQIPDT--VTEI--GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEEL 139 (394)
T ss_dssp CCCEEEECTT--CCEE--CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTC
T ss_pred cCEEEEECCC--eeEE--hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccc
Confidence 4777777542 3345 56677888888888887653 555533 4566777777666443 222 2456677777
Q ss_pred ceeeccCCcCcccCh-hhccCCcccEEcccccccccccChhhhhcccccceeeccc
Q 044755 602 EILSFWGSVIVMLPE-ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 656 (1079)
Q Consensus 602 ~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 656 (1079)
+.+.+..+ +..++. .+..+.+|+.+.+.. .+..+....+.. .+|+.+.+..
T Consensus 140 ~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~-~~l~~i~ip~ 191 (394)
T 4gt6_A 140 DTVTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG-TALTQIHIPA 191 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CCCSEEEECT
T ss_pred ccccccce-eeeecccceecccccccccccc--eeeEeccccccc-cceeEEEECC
Confidence 77777543 344433 356677777777765 355555554543 4566666654
No 224
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.99 E-value=0.028 Score=63.00 Aligned_cols=143 Identities=15% Similarity=0.161 Sum_probs=93.4
Q ss_pred eeEEEecCCCCCCCCC--ccCCCcccEEEecCCC--CcccccCCcchhccCCcceEEEecCccccccCc-cccccccccE
Q 044755 507 CYAISLRGCSIHELPE--GLECLRLEFLHINPKD--SFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQT 581 (1079)
Q Consensus 507 ~~~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~--~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~ 581 (1079)
++.+.+.. .+..+.. +.+|++|+.+.+..+. ....+ ....|.++..|+.+.+..+ ++.++. .+..+.+|+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~I--g~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKI--GRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEE--CTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEe--chhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 44444432 2344433 3479999999987642 23455 6677889999988777654 555543 4678899999
Q ss_pred EeccccccCC-cccccCCcccceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeeccc
Q 044755 582 LCLVECMLDD-IAIIGKLKNLEILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 656 (1079)
Q Consensus 582 L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 656 (1079)
+.+...-..- ...+..+.+|+.+.+..+ +..+........+|..+.+.. .+..+....+..+.+|.......
T Consensus 142 i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~--~~~~i~~~af~~c~~l~~~~~~~ 214 (394)
T 4gt6_A 142 VTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPA--KVTRIGTNAFSECFALSTITSDS 214 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECT--TCCEECTTTTTTCTTCCEEEECC
T ss_pred ccccceeeeecccceecccccccccccce-eeEeccccccccceeEEEECC--cccccccchhhhccccceecccc
Confidence 9997543211 356778899999999764 555655433446788888875 35555556677777777666543
No 225
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.92 E-value=0.0051 Score=71.73 Aligned_cols=150 Identities=20% Similarity=0.189 Sum_probs=75.4
Q ss_pred cccHHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 044755 157 FESRLCALKSVQNALT------DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEK 230 (1079)
Q Consensus 157 ~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 230 (1079)
++|.+...+.+.+.+. +....++.++|++|+||||||+.++..... ....+.++...+...+.......
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~-----~~~~i~~~~~~~~~~~~g~~~~~ 157 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR-----KFVRISLGGVRDESEIRGHRRTY 157 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC-----EEEEECCCC--------------
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC-----CeEEEEecccchhhhhhhHHHHH
Confidence 4566665555544332 234568999999999999999999988742 12334444333322222211111
Q ss_pred hCCCccccchHHHHHHHHHHHHc--CCcEEEEEeCCCCccc------cccccCCCCCC---------------CCCcEEE
Q 044755 231 LGLVLEEETGSRRASRLYERLKK--EEKILIILDNIWKCVD------LEAVGIPFGDD---------------HKGCKLL 287 (1079)
Q Consensus 231 l~~~~~~~~~~~~~~~l~~~l~~--~~~~LlvlDdv~~~~~------~~~l~~~l~~~---------------~~gs~ii 287 (1079)
.+.. ...+.+.+.. ...-++++|+++.... ...+...+... .....||
T Consensus 158 ig~~---------~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 158 VGAM---------PGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp ---------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred hccC---------chHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 1110 0111112221 2344888999876421 12222222110 0345667
Q ss_pred EEecChhh-----hhhcCCCceEeCCCCCHHHHHHHHHHHh
Q 044755 288 LTARDRNV-----LFRMGSQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 288 vTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
.||..... ..++ ..+.+.+++.++-..++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 67665432 2223 468999999999888887765
No 226
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.89 E-value=0.00041 Score=73.44 Aligned_cols=128 Identities=23% Similarity=0.242 Sum_probs=67.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCc
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEK 256 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1079)
+-+.++|++|+|||++|+.+++.... .| +.++.+.-.+. ..+.. .. ....++......++
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~--~~---~~v~~~~~~~~---------~~~~~--~~----~~~~~~~~a~~~~~ 104 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHV--PF---FSMGGSSFIEM---------FVGLG--AS----RVRDLFETAKKQAP 104 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTC--CC---CCCCSCTTTTS---------CSSSC--SS----SSSTTHHHHHHSCS
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC--CE---EEechHHHHHh---------hcchH--HH----HHHHHHHHHHhcCC
Confidence 34779999999999999999987642 22 11222211000 00000 00 01112233333467
Q ss_pred EEEEEeCCCCcc-----------------ccccccCCCCC---CCCCcEEEEEecChhhhh-h-c---CCCceEeCCCCC
Q 044755 257 ILIILDNIWKCV-----------------DLEAVGIPFGD---DHKGCKLLLTARDRNVLF-R-M---GSQKNFSIDILN 311 (1079)
Q Consensus 257 ~LlvlDdv~~~~-----------------~~~~l~~~l~~---~~~gs~iivTtR~~~v~~-~-~---~~~~~~~l~~L~ 311 (1079)
.+|++||++... ....+...+.. ......||.||....... . . .....+.+...+
T Consensus 105 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~ 184 (268)
T 2r62_A 105 SIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184 (268)
T ss_dssp CEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCC
T ss_pred eEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcC
Confidence 899999996431 12222222211 112345677776553221 1 1 223467888888
Q ss_pred HHHHHHHHHHHhc
Q 044755 312 EEEAWRLFKLMAD 324 (1079)
Q Consensus 312 ~~~~~~lf~~~~~ 324 (1079)
.++-.+++...+.
T Consensus 185 ~~~r~~il~~~~~ 197 (268)
T 2r62_A 185 FNGRVEILKVHIK 197 (268)
T ss_dssp TTTHHHHHHHHTS
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877763
No 227
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.86 E-value=0.00072 Score=71.36 Aligned_cols=60 Identities=10% Similarity=0.023 Sum_probs=38.9
Q ss_pred ccccHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc
Q 044755 156 AFESRLCALKSVQNALT--DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT 217 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 217 (1079)
.++|++..+.++.+.+. ......|.|+|..|+|||++|+.+++..... -...+.++++..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~ 68 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL 68 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGS
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCC
Confidence 46787777777766554 1223567799999999999999999865321 123456666643
No 228
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.77 E-value=0.00071 Score=63.88 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=32.7
Q ss_pred HHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC
Q 044755 169 NALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ 216 (1079)
Q Consensus 169 ~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 216 (1079)
..+.+-....+.|+|..|+|||||++.++...... .+ .+++++...
T Consensus 29 ~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 29 YVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp HHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred HHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 33333245689999999999999999999887532 22 256776654
No 229
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.76 E-value=0.00018 Score=67.72 Aligned_cols=45 Identities=13% Similarity=0.094 Sum_probs=31.3
Q ss_pred ccccHHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 156 AFESRLCALKSVQNALTD--VNVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
.++|++..++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 456777777777766641 222447799999999999999997643
No 230
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.74 E-value=0.014 Score=62.29 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.+.+.++|++|+|||+||+.+++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999999874
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.73 E-value=0.0017 Score=79.81 Aligned_cols=147 Identities=18% Similarity=0.223 Sum_probs=82.5
Q ss_pred ccccHHHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHH
Q 044755 156 AFESRLCALKSVQNALTD---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQE 226 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 226 (1079)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..... -...+.++++...+.....
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~~~-- 567 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHSTS-- 567 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCCCC--
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhcccccccc--
Confidence 467888888888777751 112379999999999999999999886321 2335666665432110000
Q ss_pred HHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCC-----CCC------CCCCcEEEEEecCh
Q 044755 227 IAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--DLEAVGIP-----FGD------DHKGCKLLLTARDR 293 (1079)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~-----l~~------~~~gs~iivTtR~~ 293 (1079)
...+...+.+...-+|+||+++... ....+... +.. .....+||+||...
T Consensus 568 -----------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 568 -----------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp --------------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred -----------------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 0111122222344588999997642 11111111 100 12356888888731
Q ss_pred -----hh----hhhc------CCCceEeCCCCCHHHHHHHHHHHh
Q 044755 294 -----NV----LFRM------GSQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 294 -----~v----~~~~------~~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
.+ ...+ .-...+.+.+++.++-..++...+
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 11 1111 223589999999999888887655
No 232
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.71 E-value=0.028 Score=58.53 Aligned_cols=147 Identities=18% Similarity=0.277 Sum_probs=78.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEE
Q 044755 179 VGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKIL 258 (1079)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~L 258 (1079)
+.|+|+.|+||||||+.++.... ...+.++.. ++. ... . . ........+.+........+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~------~~~----~~~-~---~-~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS------DFV----EMF-V---G-VGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH------HHH----HSC-T---T-HHHHHHHHHHHHHTTSSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH------HHH----HHH-h---h-HHHHHHHHHHHHHHhcCCeE
Confidence 89999999999999999998764 123333321 111 000 0 0 01112233444443345689
Q ss_pred EEEeCCCCcc------------c----cccccCCCCCC--CCCcEEEEEecChhhhhh--c---CCCceEeCCCCCHHHH
Q 044755 259 IILDNIWKCV------------D----LEAVGIPFGDD--HKGCKLLLTARDRNVLFR--M---GSQKNFSIDILNEEEA 315 (1079)
Q Consensus 259 lvlDdv~~~~------------~----~~~l~~~l~~~--~~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~ 315 (1079)
+++|+++... . ...+...+..+ ....-++.||...+.... . .-...+.++..+.++-
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 191 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 191 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHH
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHH
Confidence 9999985321 0 11111111111 123345556666554332 1 3356789999999988
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 316 WRLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 316 ~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
.++++..+......++. ....|++.+.|.-
T Consensus 192 ~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 192 EQILRIHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHHHHHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 88888776332111111 1345777777753
No 233
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.71 E-value=0.011 Score=67.47 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=35.6
Q ss_pred cccccHHHHHHHHHHH---hcCC--CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 155 EAFESRLCALKSVQNA---LTDV--NVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~---l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..++|.++.++.+..+ +..+ ..+-+.++|++|+|||++|+.+++...
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 5678988877655443 3333 235788999999999999999998864
No 234
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.60 E-value=0.029 Score=58.98 Aligned_cols=149 Identities=13% Similarity=0.166 Sum_probs=83.8
Q ss_pred cccccHHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHH
Q 044755 155 EAFESRLCALKSVQNALT----D---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIK 221 (1079)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 221 (1079)
.++.|-++.++++.+.+. . .-.+-+.++|++|+||||||+.++..... ..+++....-.+..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMY 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhh
Confidence 346677776666665432 1 11123999999999999999999987642 34555543321100
Q ss_pred HHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcccc-------------ccccCCCCC--CCCCcEE
Q 044755 222 KIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVDL-------------EAVGIPFGD--DHKGCKL 286 (1079)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~-------------~~l~~~l~~--~~~gs~i 286 (1079)
.. ........+++......+.++++|+++..... ..+...+.. .....-+
T Consensus 85 --~~-------------~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ 149 (274)
T 2x8a_A 85 --VG-------------ESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFI 149 (274)
T ss_dssp --TH-------------HHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEE
T ss_pred --hh-------------HHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEE
Confidence 00 00111233344433357889999999753110 001011111 1223445
Q ss_pred EEEecChhhhhh--c---CCCceEeCCCCCHHHHHHHHHHHh
Q 044755 287 LLTARDRNVLFR--M---GSQKNFSIDILNEEEAWRLFKLMA 323 (1079)
Q Consensus 287 ivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~ 323 (1079)
+.+|...++... . .-+..+.++..+.++-.++++...
T Consensus 150 ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 150 MAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 667776655432 1 345688999999999999998876
No 235
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.58 E-value=0.0047 Score=74.22 Aligned_cols=151 Identities=14% Similarity=0.213 Sum_probs=86.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEE 255 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1079)
.+-|.++|++|+|||+||+++++.... ..+.|+.+. + ... .. .........+++...+..
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~-----~~~~v~~~~------l----~sk----~~-gese~~lr~lF~~A~~~~ 297 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE------I----MSK----LA-GESESNLRKAFEEAEKNA 297 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTC-----EEEEEEHHH------H----HSS----CT-THHHHHHHHHHHHHTTSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC-----eEEEEEhHH------h----hcc----cc-hHHHHHHHHHHHHHHHcC
Confidence 567899999999999999999987642 234444321 1 100 00 011223344555555578
Q ss_pred cEEEEEeCCCCccc-------------cccccCCCC--CCCCCcEEEEEecChhhhh-hc----CCCceEeCCCCCHHHH
Q 044755 256 KILIILDNIWKCVD-------------LEAVGIPFG--DDHKGCKLLLTARDRNVLF-RM----GSQKNFSIDILNEEEA 315 (1079)
Q Consensus 256 ~~LlvlDdv~~~~~-------------~~~l~~~l~--~~~~gs~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~ 315 (1079)
+.+|++|+++.... ...+...+. ....+.-||.||...+... .+ .-.+.+++...+.++-
T Consensus 298 PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R 377 (806)
T 3cf2_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377 (806)
T ss_dssp SEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHH
T ss_pred CeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHH
Confidence 99999999875310 001111110 1122344555665543322 11 2346899999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHcCCCch
Q 044755 316 WRLFKLMADDHVENRELQSTATEVAQACKGLPI 348 (1079)
Q Consensus 316 ~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 348 (1079)
.++++.+........+. -...|++++.|.--
T Consensus 378 ~~IL~~~l~~~~~~~dv--dl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 378 LEILQIHTKNMKLADDV--DLEQVANETHGHVG 408 (806)
T ss_dssp HHHHHHTCSSSEECTTC--CHHHHHHHCCSCCH
T ss_pred HHHHHHHhcCCCCCccc--CHHHHHHhcCCCCH
Confidence 99998877432211111 15568888888643
No 236
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.54 E-value=0.0014 Score=70.27 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=39.8
Q ss_pred ccccHHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC
Q 044755 156 AFESRLCALKSVQNALTD--VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ 216 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 216 (1079)
.++|+...+.++.+.+.. ....-|.|+|.+|+|||++|+.+++...... ...+.++++.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~--~~~v~v~~~~ 63 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSD--RPLVTLNCAA 63 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSS--SCCCEEECSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccC--CCeEEEeCCC
Confidence 366777777777776652 3334677999999999999999998653211 1234556654
No 237
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.48 E-value=0.012 Score=62.41 Aligned_cols=173 Identities=16% Similarity=0.219 Sum_probs=90.2
Q ss_pred CccccccHHHHHHHHHHH---hcCC---------CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCH
Q 044755 153 GYEAFESRLCALKSVQNA---LTDV---------NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDI 220 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~---l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 220 (1079)
....++|.++.++++.+. +... -.+-+.|+|+.|+||||||+.++.... ...+.++..
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~----- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS----- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH-----
Confidence 344567766655544433 2210 112389999999999999999998764 223444322
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc------------c----cccccCCCCCC--CC
Q 044755 221 KKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV------------D----LEAVGIPFGDD--HK 282 (1079)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~l~~~--~~ 282 (1079)
++.. .. . . ........+.+......+.++|+|+++... . ...+...+..+ ..
T Consensus 108 -~~~~----~~-~---~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 108 -DFVE----MF-V---G-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp -HHHH----ST-T---T-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred -HHHH----HH-h---h-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 1110 00 0 0 011122334444433467899999985320 0 11111111111 12
Q ss_pred CcEEEEEecChhhhhh-----cCCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 283 GCKLLLTARDRNVLFR-----MGSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 283 gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
...++.||...++... ......+.++..+.++-.+++..++......++. ....+++.+.|.-
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 2344556665544321 1335688999999999888888777332111111 1345777777754
No 238
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.29 E-value=0.024 Score=59.46 Aligned_cols=85 Identities=11% Similarity=0.126 Sum_probs=58.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccc-----cchHHHH-HHHHHHH
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEE-----ETGSRRA-SRLYERL 251 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~l~~~l 251 (1079)
++-|.|.+|+||||||.++......+..=..++||+....++.. .+++++...+. ....+.+ ..+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999988776532112468999998887764 37778775442 1222333 3344444
Q ss_pred ---HcCCcEEEEEeCCCCc
Q 044755 252 ---KKEEKILIILDNIWKC 267 (1079)
Q Consensus 252 ---~~~~~~LlvlDdv~~~ 267 (1079)
..++.-+||+|-|...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 4467889999998664
No 239
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.22 E-value=0.015 Score=66.33 Aligned_cols=173 Identities=16% Similarity=0.238 Sum_probs=91.6
Q ss_pred CccccccHHHHHHHHHHH---hcCC---------CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCH
Q 044755 153 GYEAFESRLCALKSVQNA---LTDV---------NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDI 220 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~---l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 220 (1079)
...+++|.++.+.++.+. +.+. -.+-+.|+|++|+||||||+.++.... ...+.++.+.-.+.
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEM 103 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSS
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHh
Confidence 345677877665555443 3321 123489999999999999999998764 22345554321110
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccCCCCC--CCC
Q 044755 221 KKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD----------------LEAVGIPFGD--DHK 282 (1079)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~l~~--~~~ 282 (1079)
... ........+++......+.++++|+++.... ...+...+.. ...
T Consensus 104 --------------~~g-~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~ 168 (499)
T 2dhr_A 104 --------------FVG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 168 (499)
T ss_dssp --------------CTT-HHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSC
T ss_pred --------------hhh-hHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCc
Confidence 000 0001111111111112457999999964210 0111111111 123
Q ss_pred CcEEEEEecChhhhhh--c---CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 283 GCKLLLTARDRNVLFR--M---GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 283 gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
+..|+.||...++... . ..+..+.++..+.++-.++++.++......++. ....|++.+.|..
T Consensus 169 ~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 169 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS--TTHHHHTTSCSCC
T ss_pred cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH--HHHHHHHhcCCCC
Confidence 4456667776655332 1 234588999999999999998776332111111 1345677777765
No 240
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.10 E-value=0.031 Score=57.68 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCEEEEEEeCCccCHHHHHHHHHHHhCCCcc---------cc-chH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDK----LFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLE---------EE-TGS 241 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~-~~~ 241 (1079)
-.++.|+|.+|+|||||+..++....... .-..++|++....++...+. .+++.++.... .. ...
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 36999999999999999999987632211 13578999887765555443 34455554321 01 111
Q ss_pred H---HHHHHHHHHHcCCcEEEEEeCCCC
Q 044755 242 R---RASRLYERLKKEEKILIILDNIWK 266 (1079)
Q Consensus 242 ~---~~~~l~~~l~~~~~~LlvlDdv~~ 266 (1079)
+ ....+.+.+...+.-+||+|++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 1 122344444445778899998754
No 241
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.08 E-value=0.006 Score=66.64 Aligned_cols=149 Identities=11% Similarity=0.075 Sum_probs=80.8
Q ss_pred ccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCc
Q 044755 156 AFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVL 235 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 235 (1079)
.++|++..++.+...+..+ .-+.++|.+|+|||++|+.+++.... . ...+.+.......++.....
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~~--~---~~~i~~~~~~~~~~l~g~~~------- 93 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMDL--D---FHRIQFTPDLLPSDLIGTMI------- 93 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTTC--C---EEEEECCTTCCHHHHHEEEE-------
T ss_pred ceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhCC--C---eEEEecCCCCChhhcCCcee-------
Confidence 4678888888887777654 36889999999999999999987641 1 23445544444433321110
Q ss_pred cccchHHHHHHHHHHHHcC--CcEEEEEeCCCCcc--ccccccCCCC-----------CCCCCcEEEEEecChh------
Q 044755 236 EEETGSRRASRLYERLKKE--EKILIILDNIWKCV--DLEAVGIPFG-----------DDHKGCKLLLTARDRN------ 294 (1079)
Q Consensus 236 ~~~~~~~~~~~l~~~l~~~--~~~LlvlDdv~~~~--~~~~l~~~l~-----------~~~~gs~iivTtR~~~------ 294 (1079)
....... . .+..+ ...++++|+++... ....+...+. .......|+.|+...+
T Consensus 94 ~~~~~~~-----~-~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~ 167 (331)
T 2r44_A 94 YNQHKGN-----F-EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYP 167 (331)
T ss_dssp EETTTTE-----E-EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCC
T ss_pred ecCCCCc-----e-EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCccc
Confidence 0000000 0 00001 12588899987642 1111110000 0122445665665222
Q ss_pred hhhh-cC-CCceEeCCCCCHHHHHHHHHHHhc
Q 044755 295 VLFR-MG-SQKNFSIDILNEEEAWRLFKLMAD 324 (1079)
Q Consensus 295 v~~~-~~-~~~~~~l~~L~~~~~~~lf~~~~~ 324 (1079)
+... .. -...+.++..+.++-.+++.+.+.
T Consensus 168 l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 168 LPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 1111 11 123588999999999999988873
No 242
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.06 E-value=0.0074 Score=63.66 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=42.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEe--CCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEV--SQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKE 254 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1079)
+++.|+|++|+|||+||.+++.... ..++|++. .+..+. ...........+.+.+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~---------------~~~~le~~l~~i~~~l~~- 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSG---------------YNTDFNVFVDDIARAMLQ- 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTT---------------CBCCHHHHHHHHHHHHHH-
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhh---------------hhcCHHHHHHHHHHHHhh-
Confidence 5778999999999999999987621 12456666 222110 001222334445555654
Q ss_pred CcEEEEEeCCCC
Q 044755 255 EKILIILDNIWK 266 (1079)
Q Consensus 255 ~~~LlvlDdv~~ 266 (1079)
.+ +||+|++..
T Consensus 183 ~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 HR-VIVIDSLKN 193 (331)
T ss_dssp CS-EEEEECCTT
T ss_pred CC-EEEEecccc
Confidence 44 999999865
No 243
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.96 E-value=0.01 Score=72.93 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=58.0
Q ss_pred ccccHHHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHH
Q 044755 156 AFESRLCALKSVQNALTD---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQE 226 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 226 (1079)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+++... ...+.++++.......
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~---- 529 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT---- 529 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSC----
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhh----
Confidence 466888888777776651 1234789999999999999999998773 2345566554322100
Q ss_pred HHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 044755 227 IAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKC 267 (1079)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 267 (1079)
+.+.++.+. .....+....+...+.+...-+|+||+++..
T Consensus 530 ~~~l~g~~~-g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 530 VSRLIGAPP-GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp CSSSCCCCS-CSHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred HhhhcCCCC-CCcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 000011110 0001111122334444456789999999864
No 244
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.91 E-value=0.029 Score=60.82 Aligned_cols=85 Identities=25% Similarity=0.346 Sum_probs=55.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccc------cchHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEE------ETGSRRASRLYE 249 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 249 (1079)
-+++.|+|.+|+||||||.+++....... ..++|++....++.. .+++++...+. ....+....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 46999999999999999999998765322 347899888777654 56666654321 122222233332
Q ss_pred HHHcCCcEEEEEeCCCCc
Q 044755 250 RLKKEEKILIILDNIWKC 267 (1079)
Q Consensus 250 ~l~~~~~~LlvlDdv~~~ 267 (1079)
.+...+.-++|+|.+...
T Consensus 134 l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHTSCCSEEEEECTTTC
T ss_pred HhhhcCCCeEEehHhhhh
Confidence 333345668999998654
No 245
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.90 E-value=0.26 Score=54.63 Aligned_cols=120 Identities=13% Similarity=0.140 Sum_probs=59.1
Q ss_pred CCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccCc-cccccccccEEeccccccCC-c-ccccCCccc
Q 044755 525 ECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECMLDD-I-AIIGKLKNL 601 (1079)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~-~-~~i~~L~~L 601 (1079)
...+|+++.+.. ....+ +...|.++.+|+.++|..+ ++.++. .+.++ .|..+.+..+ ++. . ..+.. .+|
T Consensus 44 ~~~~i~~v~ip~--~vt~I--g~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 44 DRDRISEVRVNS--GITSI--GEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL 115 (379)
T ss_dssp GGGGCSEEEECT--TEEEE--CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred cccCCEEEEeCC--CccCh--HHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence 455677776643 23445 6666777888888877643 555543 34444 4555544322 222 1 22222 356
Q ss_pred ceeeccCCcCcccChhhccCCcccEEcccccccccccChhhhhcccccceeecc
Q 044755 602 EILSFWGSVIVMLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMS 655 (1079)
Q Consensus 602 ~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~ 655 (1079)
+.+.+..+ +..+......-.+|..+.+.. .+..+....+....+++...+.
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~ 166 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVS 166 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEEC
T ss_pred ccccCCCc-cccccccccccceeeeeeccc--eeeccccchhcccccccccccc
Confidence 66666543 333333222223455444433 3444444445555555555543
No 246
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.72 E-value=0.05 Score=59.28 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=42.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCEEEEEEeCCccCHHHHHHHHHHHhCCC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDK----LFDLVVFSEVSQTLDIKKIQQEIAEKLGLV 234 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1079)
.-.++.|+|.+|+||||||..++....... .-..++|++....++...+. .++..++..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~ 183 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVD 183 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCC
Confidence 346999999999999999999988743211 12568999998877776654 345555543
No 247
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.72 E-value=0.04 Score=59.61 Aligned_cols=90 Identities=22% Similarity=0.343 Sum_probs=57.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCEEEEEEeCCccCHHHHHHHHHHHhCCCcc---------cc-chH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDK----LFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLE---------EE-TGS 241 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~-~~~ 241 (1079)
-.++.|+|.+|+||||||.+++....... .-..++|++....++...+. ++++.++.... .. ...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 46999999999999999999987753211 02468999998887776665 34566655331 01 111
Q ss_pred ---HHHHHHHHHHHc-CCcEEEEEeCCCC
Q 044755 242 ---RRASRLYERLKK-EEKILIILDNIWK 266 (1079)
Q Consensus 242 ---~~~~~l~~~l~~-~~~~LlvlDdv~~ 266 (1079)
+....+...+.+ .+.-+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 122334444444 4667888888744
No 248
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.62 E-value=0.034 Score=56.30 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=34.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQ 224 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 224 (1079)
-.++.|+|.+|+||||||..++. .. -..++|++.....+...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHH
Confidence 46999999999999999999987 21 2468899887755665544
No 249
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.54 E-value=0.026 Score=69.04 Aligned_cols=171 Identities=13% Similarity=0.191 Sum_probs=92.0
Q ss_pred ccccccHHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCH
Q 044755 154 YEAFESRLCALKSVQNALTD-------------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDI 220 (1079)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 220 (1079)
...++|.+..++++.+++.. .....|.|+|.+|+||||||+.++.... . ..+.++.+.-.
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~--~---~~i~v~~~~l~-- 275 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--A---FFFLINGPEIM-- 275 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT--C---EEEEEEHHHHS--
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--C---cEEEEEchHhh--
Confidence 34567777777777666531 2345799999999999999999987653 1 12444432110
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccCCCCCCCCCc
Q 044755 221 KKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCVD----------------LEAVGIPFGDDHKGC 284 (1079)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~l~~~~~gs 284 (1079)
+ ... .........+++......+.++++|++..... +-.+...+. ...+.
T Consensus 276 -----------~-~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v 341 (806)
T 1ypw_A 276 -----------S-KLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHV 341 (806)
T ss_dssp -----------S-SST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCC
T ss_pred -----------h-hhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccE
Confidence 0 000 01112233344444445788999999853210 001111111 12344
Q ss_pred EEEEEecChhhhhh-c----CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCCc
Q 044755 285 KLLLTARDRNVLFR-M----GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGLP 347 (1079)
Q Consensus 285 ~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 347 (1079)
.||.||...+.... + .-...+.+...+.++-.+++...+.......+. ...++++.+.|.-
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~--~l~~la~~t~g~~ 407 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHV 407 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTC--CTHHHHHSCSSCC
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccc--hhHHHHHhhcCcc
Confidence 56666665432221 1 223568899999999999998877332211110 1344566666654
No 250
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.40 E-value=0.023 Score=55.25 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 044755 177 SIVGVYGMGGIGKTTLVKEV 196 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v 196 (1079)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 251
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.40 E-value=0.052 Score=58.74 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=42.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcC---------CC-----CEEEEEEeCCccCHHHHHHHHHHHhCCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDK---------LF-----DLVVFSEVSQTLDIKKIQQEIAEKLGLV 234 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1079)
-.++.|+|.+|+||||||.+++....... .. ..++|++....++...+.. +++.++..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~ 169 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGID 169 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCC
Confidence 46999999999999999999987642110 11 4689999998877776664 45566553
No 252
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.37 E-value=0.059 Score=59.61 Aligned_cols=90 Identities=18% Similarity=0.219 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhc----CCCCEEEEEEeCCccCHHHHHHHHHHHhCCCcc---------ccc-h-
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQARED----KLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLE---------EET-G- 240 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~-~- 240 (1079)
-.++.|+|.+|+|||||+..++-..... ..-..++|++....++...+ +.+++.++.... ... .
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 4699999999999999999876443211 12356899988876665554 346666665322 011 1
Q ss_pred --HHHHHHHHHHHHcCCcEEEEEeCCCC
Q 044755 241 --SRRASRLYERLKKEEKILIILDNIWK 266 (1079)
Q Consensus 241 --~~~~~~l~~~l~~~~~~LlvlDdv~~ 266 (1079)
.+....+...+...+.-+||+|.+..
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 11223333444445677888898643
No 253
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.25 E-value=0.067 Score=58.43 Aligned_cols=84 Identities=25% Similarity=0.315 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccc-----cchHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEE-----ETGSRRASRLYER 250 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 250 (1079)
-+++.|.|.+|+||||||.+++...... -..++|++....++.. .+..++...+. ....+....+.+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 4588999999999999999988776432 2368999998876654 25556654321 1122233333344
Q ss_pred HH-cCCcEEEEEeCCCC
Q 044755 251 LK-KEEKILIILDNIWK 266 (1079)
Q Consensus 251 l~-~~~~~LlvlDdv~~ 266 (1079)
+. ....-+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 43 34456899999854
No 254
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.23 E-value=0.016 Score=71.88 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=41.4
Q ss_pred ccccHHHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC
Q 044755 156 AFESRLCALKSVQNALTD-------V--NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ 216 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 216 (1079)
.++|.+..++.+...+.. . ....+.|+|..|+|||++|+.+++...... ...+.++++.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~--~~~i~i~~~~ 626 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTE 626 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG--GGEEEECTTT
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC--CcEEEEechh
Confidence 467888888887777642 1 135789999999999999999998764211 2245565554
No 255
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.21 E-value=0.069 Score=58.14 Aligned_cols=84 Identities=26% Similarity=0.379 Sum_probs=54.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccc-----cchHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEE-----ETGSRRASRLYER 250 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 250 (1079)
-+++.|.|.+|+||||||.+++....... ..++|++....++.. .+..++...+. ....+....+.+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 46999999999999999999987765322 368999998777643 24556554321 1122223333333
Q ss_pred HH-cCCcEEEEEeCCCC
Q 044755 251 LK-KEEKILIILDNIWK 266 (1079)
Q Consensus 251 l~-~~~~~LlvlDdv~~ 266 (1079)
+. ..+.-+||+|.+..
T Consensus 136 l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHTCCSEEEEECGGG
T ss_pred HHhccCCCEEEEcCHHH
Confidence 32 34555899999744
No 256
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.20 E-value=0.11 Score=56.88 Aligned_cols=157 Identities=11% Similarity=-0.050 Sum_probs=96.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHc
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKK 253 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (1079)
.-.++..++|..|.||++.++.+.+..... .|+....+.+....++.++...+... -+ -
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------pl-f 74 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQAM-------------------SL-F 74 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHHH-------------------HH-C
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcCc-------------------CC-c
Confidence 345689999999999999999998875432 35432222333444555544433211 11 1
Q ss_pred CCcEEEEEeCCCC-c--cccccccCCCCCCCCCcEEEEEecC-------hhhhhh-cCCCceEeCCCCCHHHHHHHHHHH
Q 044755 254 EEKILIILDNIWK-C--VDLEAVGIPFGDDHKGCKLLLTARD-------RNVLFR-MGSQKNFSIDILNEEEAWRLFKLM 322 (1079)
Q Consensus 254 ~~~~LlvlDdv~~-~--~~~~~l~~~l~~~~~gs~iivTtR~-------~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~ 322 (1079)
+.+-++|+|+++. . ..++.+...+.....++.+|++|.. ..+... ......++..+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5677888899865 3 3444444333333446777766643 233333 234468899999999999888888
Q ss_pred hcCCCCChhhHHHHHHHHHHcCCCchHHHH
Q 044755 323 ADDHVENRELQSTATEVAQACKGLPIALTT 352 (1079)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 352 (1079)
+..... .-..+.+..|++.++|-..++..
T Consensus 155 ~~~~g~-~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNL-ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTC-EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCC-CCCHHHHHHHHHHhchHHHHHHH
Confidence 732111 11245688899999998776654
No 257
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.17 E-value=0.06 Score=58.56 Aligned_cols=84 Identities=21% Similarity=0.328 Sum_probs=54.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccc-----cchHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEE-----ETGSRRASRLYER 250 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 250 (1079)
-+++.|+|.+|+||||||.++....... =..++|++....++.. .++.++...+. ....+....+.+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4699999999999999999998776432 2458899998776653 35566654321 1122222333333
Q ss_pred HH-cCCcEEEEEeCCCC
Q 044755 251 LK-KEEKILIILDNIWK 266 (1079)
Q Consensus 251 l~-~~~~~LlvlDdv~~ 266 (1079)
+. +.+.-+||+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 43 34566999999854
No 258
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.15 E-value=0.072 Score=56.46 Aligned_cols=86 Identities=20% Similarity=0.185 Sum_probs=47.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHc
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKK 253 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (1079)
...+++++|.+|+||||++..++.....+... .+..+.... .....+.+....+..+.+................+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--
Confidence 34699999999999999999998877532222 355555432 23334444444444444332111112222222333
Q ss_pred CCcEEEEEeC
Q 044755 254 EEKILIILDN 263 (1079)
Q Consensus 254 ~~~~LlvlDd 263 (1079)
.+.=++|+|-
T Consensus 181 ~~~dlvIiDT 190 (296)
T 2px0_A 181 SEYDHVFVDT 190 (296)
T ss_dssp GGSSEEEEEC
T ss_pred cCCCEEEEeC
Confidence 2344778883
No 259
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.02 E-value=0.034 Score=59.54 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCC---CceEEEEEcCCCCcHHHHHHHHHHHhh-hcCCCCEEEEEEeC
Q 044755 160 RLCALKSVQNALTDV---NVSIVGVYGMGGIGKTTLVKEVARQAR-EDKLFDLVVFSEVS 215 (1079)
Q Consensus 160 r~~~~~~l~~~l~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~ 215 (1079)
+...++.+.+++... ....+.++|..|+|||+||+.+++... .+ .+ .+++++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-g~-~v~~~~~~ 190 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-GV-STTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-CC-CEEEEEHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-CC-cEEEEEHH
Confidence 444555556666531 246888999999999999999999875 33 22 35555543
No 260
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.88 E-value=0.13 Score=57.11 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQARE 202 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (1079)
...||.++|.+|+||||++..++.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999887763
No 261
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.79 E-value=0.078 Score=59.16 Aligned_cols=89 Identities=20% Similarity=0.400 Sum_probs=53.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCC-------ccccchHH------
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTL-DIKKIQQEIAEKLGLV-------LEEETGSR------ 242 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------ 242 (1079)
..++|+|..|+|||||++.+......+. -+..+++-+++.. ...++.+++...-... .-.++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 3689999999999999999988765332 2445677776654 3455555554321110 00111111
Q ss_pred HHHHHHHHHH--cCCcEEEEEeCCCC
Q 044755 243 RASRLYERLK--KEEKILIILDNIWK 266 (1079)
Q Consensus 243 ~~~~l~~~l~--~~~~~LlvlDdv~~ 266 (1079)
....+.+++. ++++.|+++||+..
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1123344444 48999999999854
No 262
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.79 E-value=0.091 Score=58.70 Aligned_cols=99 Identities=24% Similarity=0.363 Sum_probs=64.2
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCC-------cc-
Q 044755 167 VQNALTD-VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTL-DIKKIQQEIAEKLGLV-------LE- 236 (1079)
Q Consensus 167 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~- 236 (1079)
.++.|.. .+-.-++|+|..|+|||+|++++.+.... .+-+.++++-+.+.. ...++.+++...-... ..
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 4555542 23457899999999999999999987542 345788898888765 4667777776542221 00
Q ss_pred ------ccch------HHHHHHHHHHHHc--CCcEEEEEeCCCC
Q 044755 237 ------EETG------SRRASRLYERLKK--EEKILIILDNIWK 266 (1079)
Q Consensus 237 ------~~~~------~~~~~~l~~~l~~--~~~~LlvlDdv~~ 266 (1079)
+++. ....-.+-+++.. ++.+|+++||+-.
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1111 1123344556654 7999999999854
No 263
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.73 E-value=0.17 Score=51.45 Aligned_cols=57 Identities=30% Similarity=0.395 Sum_probs=37.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhc---C-CCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQARED---K-LFDLVVFSEVSQTLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1079)
-.+++|+|..|+|||||++.++...... . .-..++|+.......... +..+.+..+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~ 85 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGL 85 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 3699999999999999999998754321 1 234588888765444333 3334444443
No 264
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.68 E-value=0.11 Score=52.92 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=32.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQE 226 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 226 (1079)
-.++.|+|..|+|||||++.++....... ..++|+.... ....+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc--CHHHHHHH
Confidence 36899999999999999999986654322 2466766544 34444433
No 265
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.68 E-value=0.06 Score=57.99 Aligned_cols=97 Identities=16% Similarity=0.162 Sum_probs=54.7
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCCEEEEEEeCCccC-HHHHHHHHHHHhCCC----ccc
Q 044755 165 KSVQNALTD-VNVSIVGVYGMGGIGKTTLVKEVARQARED-KLFDLVVFSEVSQTLD-IKKIQQEIAEKLGLV----LEE 237 (1079)
Q Consensus 165 ~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~----~~~ 237 (1079)
-+.++.+.. ..-..++|+|..|+|||||++.+.+....+ ..++ ++++-+++... +.++.++ +... ..+
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~~~~----~~~~vV~atad 236 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEMQRL----VKGEVVASTFD 236 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHHHTT----CSSEEEEECTT
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHHHHH----hCeEEEEeCCC
Confidence 345566552 334689999999999999999998775432 2233 44677776532 3333222 2110 001
Q ss_pred cchHHH------HHHHHHHHH-cCCcEEEEEeCCCC
Q 044755 238 ETGSRR------ASRLYERLK-KEEKILIILDNIWK 266 (1079)
Q Consensus 238 ~~~~~~------~~~l~~~l~-~~~~~LlvlDdv~~ 266 (1079)
++.... +-.+.+++. +++.+||++||+..
T Consensus 237 ep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 237 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchH
Confidence 111111 112223333 48999999999854
No 266
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.63 E-value=0.037 Score=55.16 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 159 SRLCALKSVQNALTD---VNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 159 gr~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.|++.++++.+.+.. ....+|+|.|..|.||||+++.+.....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356667778777763 3457999999999999999999988764
No 267
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.63 E-value=0.16 Score=56.45 Aligned_cols=100 Identities=21% Similarity=0.346 Sum_probs=64.3
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCC------cc-
Q 044755 166 SVQNALTD-VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTL-DIKKIQQEIAEKLGLV------LE- 236 (1079)
Q Consensus 166 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~- 236 (1079)
+.++.|.. .+-.-++|+|.+|+|||+|++++.+.... .+-+.++++-+.+.. .+.++.+++...-... ..
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtv 220 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVA 220 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEE
Confidence 45555552 23458899999999999999999987532 345778888888654 4567777776553221 00
Q ss_pred ------ccchH------HHHHHHHHHHH--cCCcEEEEEeCCCC
Q 044755 237 ------EETGS------RRASRLYERLK--KEEKILIILDNIWK 266 (1079)
Q Consensus 237 ------~~~~~------~~~~~l~~~l~--~~~~~LlvlDdv~~ 266 (1079)
++... ...-.+-+++. +++.+||++||+-.
T Consensus 221 vV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 221 LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11111 12333445554 37999999999854
No 268
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.58 E-value=0.33 Score=54.33 Aligned_cols=58 Identities=26% Similarity=0.307 Sum_probs=37.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 233 (1079)
..++|.++|.+|+||||++..++.....+... .+..|++.. .....+.+.......+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l 157 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADVYRPAAIKQLETLAEQVGV 157 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCCCCccHHHHHHhhcccCCe
Confidence 46799999999999999999999887643122 345555543 23333334444445554
No 269
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.21 E-value=0.15 Score=55.46 Aligned_cols=57 Identities=28% Similarity=0.368 Sum_probs=38.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCC----CEEEEEEeCCccCHHHHHHHHHHHhC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLF----DLVVFSEVSQTLDIKKIQQEIAEKLG 232 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (1079)
.-.++.|+|..|+|||||+..++......... ..++|++....+....+ ..+++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~ 190 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRG 190 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcC
Confidence 34799999999999999999998775211011 24589988766544433 33444443
No 270
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.16 E-value=0.029 Score=67.49 Aligned_cols=169 Identities=12% Similarity=0.191 Sum_probs=79.4
Q ss_pred ccccHHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHH
Q 044755 156 AFESRLCALKSVQNALT----D---------VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKK 222 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 222 (1079)
.+.|.++.+++|.+.+. . ...+-|.++|++|+|||.+|+++++.... -++.++. .+
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~-------~f~~v~~----~~ 546 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIKG----PE 546 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC-------EEEECCH----HH
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC-------ceEEecc----ch
Confidence 44566776766665543 0 12345789999999999999999987652 2333331 11
Q ss_pred HHHHHHHHhCCCccccchHHHHHHHHHHHHcCCcEEEEEeCCCCcc--------c--------cccccCCCC--CCCCCc
Q 044755 223 IQQEIAEKLGLVLEEETGSRRASRLYERLKKEEKILIILDNIWKCV--------D--------LEAVGIPFG--DDHKGC 284 (1079)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--------~--------~~~l~~~l~--~~~~gs 284 (1079)
++... .+ .....+..+++..++..+++|++|+++... . ...+...+. ....+.
T Consensus 547 ----l~s~~----vG-ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V 617 (806)
T 3cf2_A 547 ----LLTMW----FG-ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 617 (806)
T ss_dssp ----HHTTT----CS-SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSE
T ss_pred ----hhccc----cc-hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCE
Confidence 11111 11 123345666677666789999999987531 0 011111111 112233
Q ss_pred EEEEEecChhhhh-h-c---CCCceEeCCCCCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCC
Q 044755 285 KLLLTARDRNVLF-R-M---GSQKNFSIDILNEEEAWRLFKLMADDHVENRELQSTATEVAQACKGL 346 (1079)
Q Consensus 285 ~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 346 (1079)
-||-||...+... . + .-++.+.++.-+.++-.++|+.+........+. -...|++++.|.
T Consensus 618 ~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~--dl~~la~~t~g~ 682 (806)
T 3cf2_A 618 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGF 682 (806)
T ss_dssp EEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------------
T ss_pred EEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHhCCCC
Confidence 3333554332221 1 1 335678888777777778887766332211111 134456666553
No 271
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.99 E-value=0.056 Score=54.14 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeC
Q 044755 162 CALKSVQNALTD--VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVS 215 (1079)
Q Consensus 162 ~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 215 (1079)
+..++|.+.+.. ....+|+|+|..|.|||||++.+........ ....+|...
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g--~~~g~v~~d 59 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQG--LPAEVVPMD 59 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT--CCEEEEESG
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC--CceEEEecC
Confidence 445666666653 4567999999999999999999988765321 124555543
No 272
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.99 E-value=0.25 Score=54.95 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=36.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGLV 234 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 234 (1079)
...+|.++|.+|+||||++..++.....+ .. .++.+++.. .....+-+.......+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~-G~-kVllv~~D~~r~~a~eqL~~~~~~~gv~ 154 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR-GY-KVGLVAADVYRPAAYDQLLQLGNQIGVQ 154 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT-TC-CEEEEEECCSCHHHHHHHHHHHHTTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CC-eEEEEecCccchhHHHHHHHHHHhcCCc
Confidence 36799999999999999999998877643 22 344444432 222333344445555553
No 273
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.77 E-value=0.51 Score=53.67 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=35.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGLV 234 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 234 (1079)
..++|.|+|.+|+||||++..++.....+ .. .+..|+... .+...+.++....+.+.+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~-G~-kVllVd~D~~r~aa~~qL~~~~~~~~i~ 158 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK-GW-KTCLICADTFRAGAFDQLKQNATKARIP 158 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT-TC-CEEEEEECCSSSHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-CC-eEEEEeccccchhHHHHHHHHhhccCce
Confidence 46799999999999999999998876533 22 244455432 222233334444444443
No 274
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.69 E-value=0.19 Score=55.70 Aligned_cols=124 Identities=17% Similarity=0.143 Sum_probs=75.5
Q ss_pred CCCcccEEEecCCCCcccccCCcchhccCCcceEEEecCccccccC-ccccccccccEEeccccccCC--cccccCCccc
Q 044755 525 ECLRLEFLHINPKDSFFEINNPCNFFTGMRKLRVVDFTRMQLLLLP-SSIDLLVNLQTLCLVECMLDD--IAIIGKLKNL 601 (1079)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L 601 (1079)
.+.+++.+.+... ...+ ....|.++..|+.+.+..+ ++.+. ..+.++.+|+.+.+..+ +.. ...+..+.+|
T Consensus 215 ~~~~l~~i~~~~~--~~~i--~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 215 YGKNLKKITITSG--VTTL--GDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TCSSCSEEECCTT--CCEE--CTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred cccccceeeeccc--eeEE--ccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 4555666655432 2233 4455667777777777654 44443 34566677777776543 333 2456667777
Q ss_pred ceeeccCCcCcccCh-hhccCCcccEEcccccccccccChhhhhcccccceeeccc
Q 044755 602 EILSFWGSVIVMLPE-ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 656 (1079)
Q Consensus 602 ~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 656 (1079)
+.+.+.++.++.++. .|.++.+|+.+.+.. .++.+....+.++.+|+.+.+..
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 777777666666654 366777777777754 36666666677777777776643
No 275
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.69 E-value=0.063 Score=54.56 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 162 CALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 162 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
+..+.+...+......+|.|+|.+|+|||||+..+.....
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3344555555555678999999999999999999988754
No 276
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.63 E-value=0.039 Score=53.66 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.+|.|+|++|+||||+|+.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998763
No 277
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.60 E-value=0.38 Score=51.50 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=39.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEK 230 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 230 (1079)
-.++.|.|.+|+||||||..++.....+. ..++|++.. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 46899999999999999999987765432 578888876 4567777666554
No 278
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.58 E-value=0.042 Score=53.10 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988764
No 279
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.49 E-value=0.55 Score=64.23 Aligned_cols=137 Identities=11% Similarity=0.076 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCc
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKKEEK 256 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1079)
+-|-++|++|+|||++|+.+..... .+ ..+.++.+...+...+++.+...+.......... ..--..+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCce
Confidence 5677999999999999987765431 22 4567888888888777777665553211000000 000002688
Q ss_pred EEEEEeCCCCc--cc------cccccCCCCC------CC------CCcEEEEEecChh-hh-----hh-cCCCceEeCCC
Q 044755 257 ILIILDNIWKC--VD------LEAVGIPFGD------DH------KGCKLLLTARDRN-VL-----FR-MGSQKNFSIDI 309 (1079)
Q Consensus 257 ~LlvlDdv~~~--~~------~~~l~~~l~~------~~------~gs~iivTtR~~~-v~-----~~-~~~~~~~~l~~ 309 (1079)
.++++||+.-. +. .+-++..+.. .. .+..+|.++-... .. .+ ......+.++.
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~ 1417 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGY 1417 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCC
Confidence 99999996542 11 1111111100 01 1233444443221 11 11 12235788888
Q ss_pred CCHHHHHHHHHHHh
Q 044755 310 LNEEEAWRLFKLMA 323 (1079)
Q Consensus 310 L~~~~~~~lf~~~~ 323 (1079)
.+.++-..+|....
T Consensus 1418 P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88888888887766
No 280
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.44 E-value=0.21 Score=51.45 Aligned_cols=39 Identities=26% Similarity=0.235 Sum_probs=27.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh-hcCCCCEEEEEEeCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR-EDKLFDLVVFSEVSQ 216 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~ 216 (1079)
-.+++|+|+.|+|||||++.++.... .. -...+++....
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~~ 69 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEccC
Confidence 36999999999999999999884322 11 23456665543
No 281
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.35 E-value=0.32 Score=51.85 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
...+|+|.|..|+||||+++.+.....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456999999999999999999987764
No 282
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.30 E-value=0.38 Score=51.04 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=36.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCH--HHHHHHHHHHhCCC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDI--KKIQQEIAEKLGLV 234 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~l~~~ 234 (1079)
...+|.|+|.+|+||||++..++....... ..+.++.... +.. .+-+...++..+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~ 161 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAADT-FRAAAIEQLKIWGERVGAT 161 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECT-TCHHHHHHHHHHHHHHTCE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEcccc-ccHHHHHHHHHHHHHcCCc
Confidence 357999999999999999999998775431 2355555432 222 22234455555543
No 283
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.29 E-value=0.049 Score=54.15 Aligned_cols=26 Identities=38% Similarity=0.401 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..+|.|+|+.|+||||+|+.+.....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 284
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.06 E-value=0.057 Score=52.90 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.+.|.|+|+.|+||||+|+.+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998763
No 285
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.99 E-value=0.12 Score=55.33 Aligned_cols=41 Identities=24% Similarity=0.222 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 161 LCALKSVQNALT----DVNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 161 ~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
+...+++++.+. .+....|.|+|+.|+||||+++.++....
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 444555555543 45567799999999999999999987754
No 286
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.97 E-value=0.074 Score=53.81 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 161 LCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 161 ~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
++..+.+.+.+.....++|+|+|.+|+|||||+..+.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34445555555455678999999999999999999988754
No 287
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.96 E-value=0.27 Score=50.56 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=32.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQ 225 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 225 (1079)
-.++.|.|.+|+||||||.+++...... =..++|++.... ..++.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~--~~~~~~ 68 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEH--PVQVRQ 68 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSC--HHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCC--HHHHHH
Confidence 3689999999999999999887665422 245788876553 344443
No 288
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.94 E-value=0.059 Score=52.47 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 044755 177 SIVGVYGMGGIGKTTLVKEVAR 198 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~ 198 (1079)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 289
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.91 E-value=0.063 Score=57.69 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=36.4
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCCEEEEEEeCCc
Q 044755 165 KSVQNALTD-VNVSIVGVYGMGGIGKTTLVKEVARQARED-KLFDLVVFSEVSQT 217 (1079)
Q Consensus 165 ~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~ 217 (1079)
-+.++.+.. ..-..++|+|.+|+|||+|++++.+....+ ..+. ++++-+++.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 456777763 334588999999999999999999876532 1233 356777654
No 290
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.82 E-value=0.1 Score=47.53 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=37.7
Q ss_pred eeeccCCcCc--ccChhhccCCcccEEcccccccccccChhhhhcccccceeecccccc
Q 044755 603 ILSFWGSVIV--MLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFV 659 (1079)
Q Consensus 603 ~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 659 (1079)
.++.+++.++ .+|..+. .+|++|+|++| .++.++++.+..+++|+.|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 5666666666 6775432 46777888776 67777777777777888888777654
No 291
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.79 E-value=0.065 Score=52.79 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQ 199 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~ 199 (1079)
..+++|+|+.|+||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999764
No 292
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.74 E-value=0.065 Score=52.20 Aligned_cols=24 Identities=13% Similarity=0.364 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
++++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998765
No 293
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.73 E-value=0.14 Score=56.91 Aligned_cols=100 Identities=19% Similarity=0.225 Sum_probs=60.6
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCC--CCEEEEEEeCCc-cCHHHHHHHHHHHhCCCc-------
Q 044755 167 VQNALTD-VNVSIVGVYGMGGIGKTTLVKEVARQAREDKL--FDLVVFSEVSQT-LDIKKIQQEIAEKLGLVL------- 235 (1079)
Q Consensus 167 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~------- 235 (1079)
.++.+.. .+-.-++|.|.+|+|||+|+.+++++....+. =+.++++-+++. ..+.++.+++...-....
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 4555541 22346788999999999999999998764221 135677777654 346667767665422111
Q ss_pred cccchH------HHHHHHHHHHH--cCCcEEEEEeCCCC
Q 044755 236 EEETGS------RRASRLYERLK--KEEKILIILDNIWK 266 (1079)
Q Consensus 236 ~~~~~~------~~~~~l~~~l~--~~~~~LlvlDdv~~ 266 (1079)
.+++.. .....+.+++. +++.+|+++||+-.
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 011111 11234455555 48999999999743
No 294
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.72 E-value=0.081 Score=52.60 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=25.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 173 DVNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 173 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.....+|+|+|+.|.||||+++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999998775
No 295
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.71 E-value=1.1 Score=48.04 Aligned_cols=58 Identities=22% Similarity=0.338 Sum_probs=38.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCC
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAEKLGL 233 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 233 (1079)
....+++|+|+.|+||||+++.++...+... . .+.++.... .....+-++...++.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~-g-~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG-F-SVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT-C-CEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC-C-EEEEEeecccccchHHHHHHHHHHcCc
Confidence 3467999999999999999999988766432 2 244443322 23344455566666664
No 296
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.70 E-value=0.055 Score=52.28 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.+|+|+|+.|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988753
No 297
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.69 E-value=0.063 Score=57.39 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=30.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ 216 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 216 (1079)
++.+||+|.|-|||||||.+..+..-..... ..+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G--kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 3568999999999999999998877765332 2356666653
No 298
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.68 E-value=0.072 Score=52.52 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998875
No 299
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.65 E-value=0.4 Score=50.64 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=49.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCccc----cchHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT-LDIKKIQQEIAEKLGLVLEE----ETGSRRASRLYER 250 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~~ 250 (1079)
..++.++|.+|+||||++..++....... ..+.++..... ....+.++...+..+.+.-. ....+......+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 57999999999999999999988775332 23556665432 22333344555666554321 1222223344455
Q ss_pred HHcCCcEEEEEeCC
Q 044755 251 LKKEEKILIILDNI 264 (1079)
Q Consensus 251 l~~~~~~LlvlDdv 264 (1079)
+..+.-=++++|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 54222226777864
No 300
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.64 E-value=0.073 Score=52.92 Aligned_cols=27 Identities=37% Similarity=0.455 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998765
No 301
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.55 E-value=0.14 Score=46.50 Aligned_cols=50 Identities=24% Similarity=0.297 Sum_probs=22.2
Q ss_pred EEEecCcccc--ccCccccccccccEEeccccccCC--cccccCCcccceeeccCC
Q 044755 558 VVDFTRMQLL--LLPSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGS 609 (1079)
Q Consensus 558 ~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~ 609 (1079)
+++.++++++ .+|..+. .+|++|+|++|.|+. +..+..+.+|++|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4555555555 5554321 234444444444443 122333444444444443
No 302
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.55 E-value=0.057 Score=59.28 Aligned_cols=49 Identities=22% Similarity=0.212 Sum_probs=35.3
Q ss_pred CccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 153 GYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
....++|.+..++.+..........-+.|+|.+|+|||++|+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3456788877665554444333334488999999999999999998764
No 303
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.55 E-value=0.24 Score=54.73 Aligned_cols=98 Identities=21% Similarity=0.274 Sum_probs=59.5
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC----EEEEEEeCCc-cCHHHHHHHHHHHhCCC------
Q 044755 167 VQNALTD-VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFD----LVVFSEVSQT-LDIKKIQQEIAEKLGLV------ 234 (1079)
Q Consensus 167 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~~~~-~~~~~~~~~i~~~l~~~------ 234 (1079)
.++.|.. .+-..++|.|..|+|||+|+.++.+.... +-+ .++++-+.+. ..+.++.+++...-...
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~ 218 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFM 218 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEE
Confidence 4444441 12235789999999999999999987653 123 5677777754 44566666655431111
Q ss_pred -ccccchHH------HHHHHHHHHH--cCCcEEEEEeCCCC
Q 044755 235 -LEEETGSR------RASRLYERLK--KEEKILIILDNIWK 266 (1079)
Q Consensus 235 -~~~~~~~~------~~~~l~~~l~--~~~~~LlvlDdv~~ 266 (1079)
..+++... ....+.+++. +++.+|+++||+-.
T Consensus 219 atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 219 NLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 01111111 1334556666 38999999999854
No 304
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.50 E-value=0.061 Score=53.62 Aligned_cols=25 Identities=24% Similarity=0.427 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
..+|.|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 305
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.42 E-value=0.088 Score=51.88 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999988763
No 306
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.42 E-value=0.21 Score=65.63 Aligned_cols=84 Identities=24% Similarity=0.286 Sum_probs=56.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCcc-----ccchHHH-HHHHH
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLE-----EETGSRR-ASRLY 248 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~-~~~l~ 248 (1079)
..++|.|+|++|+|||+||.++....... =..++|+++...++... ++.++.+.+ .....+. ...+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 45799999999999999999998876532 23578888888776665 455563321 1112233 33333
Q ss_pred HHHHcCCcEEEEEeCCC
Q 044755 249 ERLKKEEKILIILDNIW 265 (1079)
Q Consensus 249 ~~l~~~~~~LlvlDdv~ 265 (1079)
....+.+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 33345678899999985
No 307
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.41 E-value=0.097 Score=49.87 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..+++.|+|..|+|||||+..+....+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 357999999999999999999998765
No 308
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.38 E-value=0.51 Score=49.90 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=47.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccC-HHHHHHHHHHHhCCCccc----cchHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLD-IKKIQQEIAEKLGLVLEE----ETGSRRASRLYER 250 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~~ 250 (1079)
..+++|+|.+|+||||++..++....... ..+.++....... ....+....+..+...-. ....+........
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~ 175 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999988775432 2345555432211 112233445555543321 1122222333444
Q ss_pred HHcCCcEEEEEeCC
Q 044755 251 LKKEEKILIILDNI 264 (1079)
Q Consensus 251 l~~~~~~LlvlDdv 264 (1079)
+.....=++|+|--
T Consensus 176 ~~~~~~D~viiDtp 189 (295)
T 1ls1_A 176 ARLEARDLILVDTA 189 (295)
T ss_dssp HHHHTCCEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 43123346778865
No 309
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.31 E-value=0.069 Score=52.01 Aligned_cols=26 Identities=38% Similarity=0.514 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.++|.|+|+.|+||||+|+.+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998763
No 310
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.30 E-value=0.095 Score=51.33 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQARE 202 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (1079)
...+|.|.|+.|+||||+++.++.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999988753
No 311
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.30 E-value=0.083 Score=52.00 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 312
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.28 E-value=0.17 Score=53.43 Aligned_cols=55 Identities=11% Similarity=0.017 Sum_probs=34.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhcC-CCCEEEEEEeCCccCHHHHHHHHH
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQAREDK-LFDLVVFSEVSQTLDIKKIQQEIA 228 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~i~ 228 (1079)
....+|+|+|..|+||||||+.+........ ....+..|+...-.-.......+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 4567999999999999999999987765321 122344445544333334444443
No 313
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.25 E-value=0.086 Score=54.61 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.+|.|+|+.|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 5789999999999999999998763
No 314
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.21 E-value=0.072 Score=51.60 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
++|.|.|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998764
No 315
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.18 E-value=0.091 Score=50.84 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 316
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.15 E-value=0.09 Score=50.50 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
...+|+|.|+.|+||||+|+.+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998764
No 317
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.10 E-value=0.52 Score=52.27 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHH--HHHHHHHHhCCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKK--IQQEIAEKLGLV 234 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~--~~~~i~~~l~~~ 234 (1079)
..++.|+|.+|+||||++..++.....+. ..+..+.. +...... .+.......+.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g--~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~ 155 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAA-DTQRPAAREQLRLLGEKVGVP 155 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEEC-CSSCHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEeec-cccCchhHHHHHHhcccCCcc
Confidence 47899999999999999999998876331 23445544 3333322 234455555553
No 318
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.08 E-value=0.27 Score=52.47 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=30.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ 216 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 216 (1079)
....+|+|+|..|+|||||++.+..-......-..+.+|.-..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 3457999999999999999999988765321112355655443
No 319
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.05 E-value=0.21 Score=48.62 Aligned_cols=111 Identities=18% Similarity=0.116 Sum_probs=57.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC---ccCHHHHHHHHHHHhCCC---------ccccc---hH
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ---TLDIKKIQQEIAEKLGLV---------LEEET---GS 241 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~~i~~~l~~~---------~~~~~---~~ 241 (1079)
..|-|++..|.||||.|-...-..-.. .+ .+.++..-+ ......++. .++.. +.... +.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~-G~-rV~~vQF~Kg~~~~gE~~~l~----~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH-GK-NVGVVQFIKGTWPNGERNLLE----PHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT-TC-CEEEEESSCCSSCCHHHHHHG----GGTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC-CC-eEEEEEeeCCCCCccHHHHHH----hCCcEEEEcccccccCCCCcHHHH
Confidence 567777777799999999888776532 22 344554332 223333333 33211 11111 11
Q ss_pred H----HHHHHHHHHHcCCcEEEEEeCCCCc-----cccccccCCCCCCCCCcEEEEEecCh
Q 044755 242 R----RASRLYERLKKEEKILIILDNIWKC-----VDLEAVGIPFGDDHKGCKLLLTARDR 293 (1079)
Q Consensus 242 ~----~~~~l~~~l~~~~~~LlvlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtR~~ 293 (1079)
. ......+.+..++-=|||||++-.. ...+.+...+.......-||+|+|..
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1 1223333333344459999998432 22222322233334466799999976
No 320
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.93 E-value=0.095 Score=52.21 Aligned_cols=24 Identities=25% Similarity=0.601 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 321
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.90 E-value=0.086 Score=52.58 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
...+|.|+|+.|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998875
No 322
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.89 E-value=0.096 Score=51.45 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 044755 177 SIVGVYGMGGIGKTTLVKEVAR 198 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~ 198 (1079)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 323
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.78 E-value=0.1 Score=51.07 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQ 199 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~ 199 (1079)
..+|.|+|+.|+||||+++.+.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 324
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.77 E-value=0.1 Score=52.19 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
...+|+|+|+.|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999987653
No 325
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.73 E-value=0.082 Score=51.70 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.+|.|.|++|+||||+|+.+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998764
No 326
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.70 E-value=0.12 Score=51.39 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998764
No 327
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.68 E-value=0.11 Score=51.38 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988653
No 328
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.67 E-value=0.11 Score=51.16 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
..+|.|.|+.|+||||+|+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
No 329
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.66 E-value=0.14 Score=56.31 Aligned_cols=45 Identities=27% Similarity=0.209 Sum_probs=35.0
Q ss_pred cccHHHHHHHHHHHhc-------------C--CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 157 FESRLCALKSVQNALT-------------D--VNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 157 ~~gr~~~~~~l~~~l~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
++|.+..++.+..++. . .....+.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4677787887777762 1 1345789999999999999999998763
No 330
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.61 E-value=0.13 Score=51.52 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..+||.|.|++|+||||.|+.++++..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 568999999999999999999998764
No 331
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.60 E-value=0.11 Score=51.54 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQ 199 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 199 (1079)
.+..+|+|+|+.|+||||+|+.+.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34679999999999999999999874
No 332
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.55 E-value=0.1 Score=52.06 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
.+++|+|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 333
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.50 E-value=0.17 Score=53.32 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 334
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.44 E-value=0.27 Score=54.29 Aligned_cols=100 Identities=20% Similarity=0.261 Sum_probs=59.0
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhhhc--------CCCC-EEEEEEeCCc-cCHHHHHHHHHHHhCCC-
Q 044755 167 VQNALTD-VNVSIVGVYGMGGIGKTTLVKEVARQARED--------KLFD-LVVFSEVSQT-LDIKKIQQEIAEKLGLV- 234 (1079)
Q Consensus 167 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~- 234 (1079)
.++.|.. .+-.-++|.|..|+|||+|+.++++..... ++-+ .++++-+.+. ..+.++.+++...-...
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~r 216 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSR 216 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccc
Confidence 3444441 223467899999999999999999886531 1222 5677777754 34566666654321111
Q ss_pred ------ccccchHH------HHHHHHHHHH--cCCcEEEEEeCCCC
Q 044755 235 ------LEEETGSR------RASRLYERLK--KEEKILIILDNIWK 266 (1079)
Q Consensus 235 ------~~~~~~~~------~~~~l~~~l~--~~~~~LlvlDdv~~ 266 (1079)
..+++... ..-.+.+++. +++.+|+++||+-.
T Consensus 217 tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 217 SVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 01111111 1334556666 38999999999854
No 335
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.41 E-value=0.094 Score=51.38 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998764
No 336
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.40 E-value=0.13 Score=49.84 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.++|+|..|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988765
No 337
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.37 E-value=0.13 Score=50.35 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..|.+.|+.|+||||+|+.+.+...
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987653
No 338
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.37 E-value=0.12 Score=53.69 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 339
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.36 E-value=0.12 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.+|+|.|+.|+||||+|+.+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998763
No 340
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.36 E-value=0.11 Score=51.83 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 044755 177 SIVGVYGMGGIGKTTLVKEVAR 198 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~ 198 (1079)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 341
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.31 E-value=0.13 Score=51.59 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQARE 202 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (1079)
.+|.|.|+.|+||||+|+.+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 58999999999999999999988753
No 342
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.30 E-value=0.1 Score=50.27 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998754
No 343
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.30 E-value=0.1 Score=50.73 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
+.|.|+|+.|+|||||++.+..+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4578999999999999999987753
No 344
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.25 E-value=0.12 Score=52.46 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.+|+|+|+.|+||||+|+.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987653
No 345
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.25 E-value=0.13 Score=50.53 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987653
No 346
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.17 E-value=0.11 Score=59.41 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=35.6
Q ss_pred ccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 156 AFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.++|++..++.+...+..+ .-|.++|++|+|||+||+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 3678888888877776644 4688999999999999999988653
No 347
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.14 E-value=0.13 Score=51.31 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998755
No 348
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.12 E-value=0.14 Score=53.10 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
....+|+|.|+.|+||||+|+.+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457999999999999999999988654
No 349
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.09 E-value=0.15 Score=51.07 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
...+|+|+|..|.|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988754
No 350
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.09 E-value=0.13 Score=51.03 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988763
No 351
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.09 E-value=0.13 Score=52.95 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..+|+|+|+.|+||||+++.+++...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46999999999999999999997763
No 352
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.08 E-value=0.14 Score=50.39 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..+|+|.|+.|+||||+|+.+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988753
No 353
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.04 E-value=0.18 Score=55.85 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
...+.++|++|+|||++|+.+++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999876
No 354
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.00 E-value=0.14 Score=49.03 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 355
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.90 E-value=0.11 Score=51.51 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
++++|+|+.|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987653
No 356
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.81 E-value=0.31 Score=50.02 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
....+|.|.|++|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 355789999999999999999998765
No 357
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.80 E-value=0.79 Score=45.92 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
-.++|.|++|+||||+|+.+.+...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 358
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.75 E-value=0.15 Score=50.94 Aligned_cols=24 Identities=38% Similarity=0.643 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQ 199 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~ 199 (1079)
..+|+|+|+.|.||||+|+.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999764
No 359
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.75 E-value=0.17 Score=49.69 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
+..+|+|.|+.|+||||+|+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998763
No 360
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.72 E-value=0.2 Score=48.85 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=28.3
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 164 LKSVQNALTD-VNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 164 ~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
+..+..++.. +....+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4455555543 2234799999999999999999998864
No 361
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.69 E-value=0.15 Score=50.16 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
+|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 362
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.68 E-value=0.1 Score=50.95 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999987754
No 363
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.64 E-value=0.18 Score=53.50 Aligned_cols=28 Identities=32% Similarity=0.512 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQARE 202 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (1079)
...+++|+|..|+||||+++.++...+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3569999999999999999999987764
No 364
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.64 E-value=0.11 Score=52.30 Aligned_cols=111 Identities=15% Similarity=0.115 Sum_probs=60.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHc-
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEETGSRRASRLYERLKK- 253 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~- 253 (1079)
.-.++.|+|..|.||||++..+.++..... . .++.+...... . ....++..++........ .....+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g-~-kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~-~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD-V-KYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEV-ESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT-C-CEEEEEECCCG--G-GCSSCCCCCCCSSCCEEE-SSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC-C-EEEEEEeccCc--h-HHHHHHHhcCCCcccccc-CCHHHHHHHHHHH
Confidence 347889999999999999999988876432 2 34444433321 1 122445555543322111 111234444442
Q ss_pred ---CCcEEEEEeCCCCc--cccccccCCCCCCCCCcEEEEEecChh
Q 044755 254 ---EEKILIILDNIWKC--VDLEAVGIPFGDDHKGCKLLLTARDRN 294 (1079)
Q Consensus 254 ---~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~ 294 (1079)
++.-+||+|.+... +.++.+.. +.+ .|-.||+|.+..+
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecccc
Confidence 23449999998643 22222211 111 2678999988553
No 365
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.61 E-value=0.13 Score=49.62 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEV 196 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v 196 (1079)
..+++|+|..|.|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999964
No 366
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.54 E-value=0.15 Score=49.89 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=41.2
Q ss_pred ccCCcceEEEecCc-ccc-----ccCccccccccccEEeccccccCC--c----ccccCCcccceeeccCCcCcc-----
Q 044755 551 TGMRKLRVVDFTRM-QLL-----LLPSSIDLLVNLQTLCLVECMLDD--I----AIIGKLKNLEILSFWGSVIVM----- 613 (1079)
Q Consensus 551 ~~l~~Lr~L~L~~~-~i~-----~lp~~i~~L~~L~~L~L~~~~l~~--~----~~i~~L~~L~~L~l~~~~l~~----- 613 (1079)
.+-..|+.|+|+++ .|. .+-..+..-..|+.|+|++|.+.+ . +.+..-+.|++|+|++|.+..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456666666664 443 133344445566666666666554 1 223334556666666665432
Q ss_pred cChhhccCCcccEEcccc
Q 044755 614 LPEELGHLTKLRQLDLSN 631 (1079)
Q Consensus 614 lp~~i~~L~~L~~L~l~~ 631 (1079)
+-+.+..-+.|++|+|++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 222233334455665554
No 367
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.54 E-value=0.15 Score=50.93 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 044755 177 SIVGVYGMGGIGKTTLVKEVAR 198 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~ 198 (1079)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 368
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.52 E-value=0.95 Score=48.53 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=37.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEK 230 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 230 (1079)
-.++.|.|.+|+||||+|..++...... =..++|++.. .+..++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCC--CCHHHHHHHHHHH
Confidence 3689999999999999999998886542 2457777664 4566776666543
No 369
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.52 E-value=0.17 Score=50.76 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=26.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCE
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDL 208 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 208 (1079)
..+|+|.|+.|+||||+|+.+.+.... .+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 468999999999999999999987653 34555
No 370
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.48 E-value=0.17 Score=51.15 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
...|.|.|+.|+||||+|+.+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999988763
No 371
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.42 E-value=0.18 Score=50.63 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=26.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCE
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDL 208 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 208 (1079)
..+|+|.|+.|+||||+|+.+.+.... .+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~-~~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA-AGHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 468999999999999999999988653 34554
No 372
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.34 E-value=0.18 Score=47.63 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
..-.+++++|..|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344699999999999999999998876
No 373
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.26 E-value=0.17 Score=50.84 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987753
No 374
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.18 E-value=0.17 Score=52.38 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
...+|+|+|+.|.||||+++.+.+...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346999999999999999999997754
No 375
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.12 E-value=0.15 Score=48.88 Aligned_cols=36 Identities=33% Similarity=0.344 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEE
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFS 212 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (1079)
++++|+|..|.|||||++.+......+..-...+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~ 38 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKR 38 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEE
Confidence 589999999999999999998876643222344444
No 376
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.12 E-value=0.16 Score=50.76 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-.+++|+|+.|+|||||++.+....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3699999999999999999998765
No 377
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.09 E-value=0.39 Score=52.44 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=29.6
Q ss_pred HHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 164 LKSVQNALT--DVNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 164 ~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..++++.+. ..+..+|+|+|.+|+|||||+..+.....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444555554 45678999999999999999999987764
No 378
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.08 E-value=0.36 Score=51.60 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=31.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc
Q 044755 173 DVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT 217 (1079)
Q Consensus 173 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 217 (1079)
....++|+|+|-||+||||+|..++....... . .++-|+....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G-~-~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG-K-RVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCC-C-eEEEEeCCCC
Confidence 34678999999999999999999988776432 2 4666666543
No 379
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.07 E-value=0.11 Score=52.34 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
+|+|.|..|+||||+|+.+.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999998765
No 380
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.06 E-value=0.17 Score=51.34 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
...|.|.|+.|+||||+|+.+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999998765
No 381
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.02 E-value=0.23 Score=51.40 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
...+|.|+|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999988753
No 382
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.00 E-value=0.17 Score=51.22 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
...|.|.|+.|+||||+|+.+++...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 383
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.86 E-value=0.2 Score=49.47 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 384
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.76 E-value=0.19 Score=50.47 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 385
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.75 E-value=0.22 Score=49.89 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
....+|.|.|+.|+||||+|+.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999988765
No 386
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.74 E-value=0.21 Score=51.37 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
...+|+|.|..|.|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34699999999999999999998764
No 387
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.71 E-value=0.16 Score=51.24 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
..+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 388
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.68 E-value=0.72 Score=52.26 Aligned_cols=96 Identities=20% Similarity=0.259 Sum_probs=58.6
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc-cCHHHHHHHHHH----HhCCCc----
Q 044755 166 SVQNALTD-VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT-LDIKKIQQEIAE----KLGLVL---- 235 (1079)
Q Consensus 166 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~----~l~~~~---- 235 (1079)
+.++.|.. .+-..++|.|..|+|||+|+.++.+... -+.++++-+.+. ..+.++++++-+ .++...
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rt 296 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERT 296 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGE
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccce
Confidence 45566652 3346889999999999999999988643 467888888765 345555554322 122100
Q ss_pred ------cccchHH------HHHHHHHHHH-cCCcEEEEEeCCC
Q 044755 236 ------EEETGSR------RASRLYERLK-KEEKILIILDNIW 265 (1079)
Q Consensus 236 ------~~~~~~~------~~~~l~~~l~-~~~~~LlvlDdv~ 265 (1079)
.++.... ..-.+.+++. +++.+||++|++-
T Consensus 297 vvV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t 339 (600)
T 3vr4_A 297 VLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTS 339 (600)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 0111111 1223344444 4799999999985
No 389
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.67 E-value=1.5 Score=49.57 Aligned_cols=51 Identities=14% Similarity=0.036 Sum_probs=37.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
-.++.|.|.+|+||||+|..++....... =..++|++... +..++...++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~--~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLEM--PAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECCC--CHHHHHHHHHH
Confidence 36899999999999999999988765321 13577877753 45666666543
No 390
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.66 E-value=0.35 Score=46.46 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.++++|+|..|+|||||+..+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999988764
No 391
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.65 E-value=0.71 Score=60.08 Aligned_cols=85 Identities=26% Similarity=0.350 Sum_probs=54.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccc------cchHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEE------ETGSRRASRLYE 249 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 249 (1079)
-.+|.|.|.+|+||||||.+++....... ..++|++.....+.. .++.++...+. ....+....+.+
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcC--CCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 46999999999999999999988876332 358888887766543 26666654321 122222222222
Q ss_pred HHHcCCcEEEEEeCCCCc
Q 044755 250 RLKKEEKILIILDNIWKC 267 (1079)
Q Consensus 250 ~l~~~~~~LlvlDdv~~~ 267 (1079)
...+.+.-+||+|.+...
T Consensus 805 lv~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHccCCCEEEEechhhh
Confidence 222356679999998764
No 392
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.64 E-value=0.18 Score=49.26 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.+++|+|..|+|||||++.++...+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999988765
No 393
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.57 E-value=0.77 Score=47.12 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=32.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEI 227 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 227 (1079)
-.++.|.|.+|+|||++|.+++.+...+ .-..++|++... +..++.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccC--CHHHHHHHH
Confidence 3689999999999999999876553221 123466776654 455555443
No 394
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.44 E-value=0.18 Score=51.72 Aligned_cols=26 Identities=38% Similarity=0.331 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..+|+|+|+.|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998764
No 395
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.36 E-value=0.73 Score=51.98 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=41.8
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccC-HHHHHHHH
Q 044755 166 SVQNALTD-VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLD-IKKIQQEI 227 (1079)
Q Consensus 166 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i 227 (1079)
+.++.|.. .+-..++|.|..|+|||+|++++.+... -+.++++-+++... +.++.+++
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 45566652 2345889999999999999999887632 46788998887654 45555554
No 396
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.32 E-value=0.23 Score=50.15 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..+|+|.|+.|.||||+|+.+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988764
No 397
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.29 E-value=0.2 Score=50.36 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
-.+++|+|+.|+|||||++.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46999999999999999999988754
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.29 E-value=0.23 Score=48.17 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..+|+|.|+.|+||||+++.+.....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46889999999999999999988764
No 399
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.28 E-value=0.28 Score=52.03 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=29.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLD 219 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 219 (1079)
..+++|+|..|+||||+++.++...+.. ...+++...+.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r 140 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFR 140 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccc
Confidence 4699999999999999999998877543 2334444444333
No 400
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.26 E-value=0.21 Score=49.62 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
..+|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998765
No 401
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.22 E-value=0.23 Score=53.07 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.+|+|.|+.|+||||||..++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 402
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.22 E-value=0.52 Score=50.39 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVS 215 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 215 (1079)
...+|+|+|.+|+||||++..++....... ..+.++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g--~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELG--YKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCC
Confidence 457999999999999999999988765431 234555443
No 403
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.12 E-value=0.28 Score=51.00 Aligned_cols=27 Identities=41% Similarity=0.443 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
...++.++|.||+||||++..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357889999999999999999987765
No 404
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.10 E-value=0.25 Score=49.04 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
+|.|.|++|+||+|.|+.++++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998764
No 405
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.09 E-value=0.23 Score=55.34 Aligned_cols=46 Identities=26% Similarity=0.334 Sum_probs=34.5
Q ss_pred ccccHHHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 156 AFESRLCALKSVQNALTD--------------VNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.++|.++.++.+..++.. ...+-|.++|++|+||||+|+.++....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356777777777655521 1245688999999999999999998864
No 406
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.95 E-value=0.54 Score=52.61 Aligned_cols=97 Identities=13% Similarity=0.182 Sum_probs=57.4
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCcHHHHH-HHHHHHhhhcCCCCE-EEEEEeCCcc-CHHHHHHHHHHHhCCCc------
Q 044755 166 SVQNALTD-VNVSIVGVYGMGGIGKTTLV-KEVARQAREDKLFDL-VVFSEVSQTL-DIKKIQQEIAEKLGLVL------ 235 (1079)
Q Consensus 166 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~------ 235 (1079)
+.++.+.. .+-..++|+|..|+|||+|| .++.+.. .-+. ++++-+++.. .+.++.+++...-....
T Consensus 164 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 164 KAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred cccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 34555541 23357899999999999995 4676654 2464 5788887654 45666666654321111
Q ss_pred -cccchHH------HHHHHHHHHH-cCCcEEEEEeCCCC
Q 044755 236 -EEETGSR------RASRLYERLK-KEEKILIILDNIWK 266 (1079)
Q Consensus 236 -~~~~~~~------~~~~l~~~l~-~~~~~LlvlDdv~~ 266 (1079)
.+++... ....+-+++. +++.+|+++||+-.
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 0111111 1223344444 47999999999854
No 407
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.89 E-value=0.46 Score=48.09 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQARE 202 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (1079)
....|+|.|+.|+||||+++.+.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999998764
No 408
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.88 E-value=0.25 Score=49.15 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
+|+|.|+.|+||||+|+.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988654
No 409
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.85 E-value=0.25 Score=49.68 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
..|.|.|+.|+||||+|+.+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998763
No 410
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=88.83 E-value=0.55 Score=52.73 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=30.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccC
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLD 219 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 219 (1079)
...+++|+|..|+|||||++.++...+.. ...+++.....+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 35799999999999999999998876533 3345554444443
No 411
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.75 E-value=0.26 Score=51.87 Aligned_cols=24 Identities=21% Similarity=0.616 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVAR 198 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~ 198 (1079)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999983
No 412
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.69 E-value=1.4 Score=49.90 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIA 228 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 228 (1079)
-.++.|.|.+|+||||||..++........ ..++|++... +..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECCC--CHHHHHHHHH
Confidence 369999999999999999999988754321 2577877654 4456665553
No 413
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.69 E-value=0.28 Score=49.33 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVAR 198 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~ 198 (1079)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 414
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.68 E-value=0.26 Score=49.39 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
.|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 415
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.68 E-value=0.27 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
++|.|+|+.|+||||||+.+++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999865
No 416
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.67 E-value=0.27 Score=49.74 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
.|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 417
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.66 E-value=0.85 Score=59.35 Aligned_cols=84 Identities=26% Similarity=0.338 Sum_probs=60.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccc------cchHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEE------ETGSRRASRLYE 249 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 249 (1079)
-++|-|+|+.|+||||||.++....... =...+|+.+....+..- ++.+|+..+. +..++.+..+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 4799999999999999999998765432 35689999988887764 7888876542 222333344444
Q ss_pred HHHcCCcEEEEEeCCCC
Q 044755 250 RLKKEEKILIILDNIWK 266 (1079)
Q Consensus 250 ~l~~~~~~LlvlDdv~~ 266 (1079)
.++.+..-+||+|-|-.
T Consensus 1504 ~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHTCCSEEEESCSTT
T ss_pred HHHcCCCCEEEEccHHh
Confidence 44557778999998844
No 418
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.63 E-value=2.1 Score=59.19 Aligned_cols=89 Identities=16% Similarity=0.093 Sum_probs=53.6
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCcccc-chHHHHH
Q 044755 167 VQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEEE-TGSRRAS 245 (1079)
Q Consensus 167 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~ 245 (1079)
+++.+...+ +-|-++|+.|+|||++++.+..... .+ ..+.++++...+...++..+-..+....... ..
T Consensus 1296 ll~~ll~~~-~pvLL~GptGtGKT~li~~~L~~l~---~~-~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~----- 1365 (3245)
T 3vkg_A 1296 VLHAWLSEH-RPLILCGPPGSGKTMTLTSTLRAFP---DF-EVVSLNFSSATTPELLLKTFDHHCEYKRTPSGET----- 1365 (3245)
T ss_dssp HHHHHHHTT-CCCEEESSTTSSHHHHHHHHGGGCT---TE-EEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCE-----
T ss_pred HHHHHHHCC-CcEEEECCCCCCHHHHHHHHHHhCC---CC-ceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCc-----
Confidence 444444333 4567999999999999877664331 12 3567888988888888887755442111000 00
Q ss_pred HHHHHHHcCCcEEEEEeCCCC
Q 044755 246 RLYERLKKEEKILIILDNIWK 266 (1079)
Q Consensus 246 ~l~~~l~~~~~~LlvlDdv~~ 266 (1079)
+..-...||+.++++||+.-
T Consensus 1366 -~~~p~~~Gk~~VlFiDDiNm 1385 (3245)
T 3vkg_A 1366 -VLRPTQLGKWLVVFCDEINL 1385 (3245)
T ss_dssp -EEEESSTTCEEEEEETTTTC
T ss_pred -ccCCCcCCceEEEEecccCC
Confidence 00000026888999999864
No 419
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.41 E-value=0.7 Score=46.80 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=28.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEE
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFS 212 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (1079)
...|.|.|..|+||||+++.+.+.... .++..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeee
Confidence 468999999999999999999988764 346634443
No 420
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.36 E-value=0.31 Score=49.64 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
...|.|.|+.|+||||+|+.+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 421
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.29 E-value=0.26 Score=58.32 Aligned_cols=48 Identities=21% Similarity=0.186 Sum_probs=38.8
Q ss_pred CCccccccHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 152 KGYEAFESRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.....++|.+..++.+...+..+ ..+.|+|..|+||||||+.++....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 34456788888888777777655 5889999999999999999998654
No 422
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.22 E-value=0.27 Score=50.16 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
.+++|+|+.|.|||||.+.++--.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 799999999999999999997543
No 423
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.12 E-value=0.92 Score=51.54 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044755 159 SRLCALKSVQNALTDVNVSIVGVYGMGGIGKTTLVKEVARQARED 203 (1079)
Q Consensus 159 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (1079)
+..+.+..+.+++.+.+ +.+.|.|.+|+||||++..+.......
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 34555666766766544 489999999999999999998887543
No 424
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.07 E-value=0.37 Score=52.24 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQARE 202 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (1079)
..+++|+|..|+||||+++.++...+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 469999999999999999999987754
No 425
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.03 E-value=0.87 Score=50.95 Aligned_cols=97 Identities=15% Similarity=0.212 Sum_probs=57.7
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCcHHHHH-HHHHHHhhhcCCCCE-EEEEEeCCcc-CHHHHHHHHHHHhCCCcc-----
Q 044755 166 SVQNALTD-VNVSIVGVYGMGGIGKTTLV-KEVARQAREDKLFDL-VVFSEVSQTL-DIKKIQQEIAEKLGLVLE----- 236 (1079)
Q Consensus 166 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~----- 236 (1079)
+.++.+.. .+-..++|+|..|+|||+|| ..+.+... -+. ++++-+++.. .+.++.+++...-.....
T Consensus 151 raID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 151 KAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred eecccccccccCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 34555542 23357899999999999995 46766542 453 5788887654 456666666553222110
Q ss_pred --ccchHHH------HHHHHHHHH-cCCcEEEEEeCCCC
Q 044755 237 --EETGSRR------ASRLYERLK-KEEKILIILDNIWK 266 (1079)
Q Consensus 237 --~~~~~~~------~~~l~~~l~-~~~~~LlvlDdv~~ 266 (1079)
+++...+ ...+-+++. +++.+|+++||+-.
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 1111111 223444444 47999999999854
No 426
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.92 E-value=0.84 Score=45.43 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=34.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHH
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
..|.|.|..|+||||+++.+.+..... .+..+++..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999887643 3433333332222234455555554
No 427
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.90 E-value=0.34 Score=47.30 Aligned_cols=107 Identities=11% Similarity=-0.003 Sum_probs=68.3
Q ss_pred CCcccEEEecCC-CCccc-ccCCcchhccCCcceEEEecCccccc-----cCccccccccccEEeccccccCC--c----
Q 044755 526 CLRLEFLHINPK-DSFFE-INNPCNFFTGMRKLRVVDFTRMQLLL-----LPSSIDLLVNLQTLCLVECMLDD--I---- 592 (1079)
Q Consensus 526 ~~~Lr~L~l~~~-~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~l~~--~---- 592 (1079)
-+.|+.|.+.++ ..... .......+..-+.|+.|+|++|.|.. +-..+..-+.|++|+|++|.|.. .
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 345677777654 22110 00012334566789999999998863 44556677889999999999876 2
Q ss_pred ccccCCcccceeeccCCcC---c-----ccChhhccCCcccEEccccc
Q 044755 593 AIIGKLKNLEILSFWGSVI---V-----MLPEELGHLTKLRQLDLSNC 632 (1079)
Q Consensus 593 ~~i~~L~~L~~L~l~~~~l---~-----~lp~~i~~L~~L~~L~l~~~ 632 (1079)
+.+..-+.|++|+|+++.. . .+...+..-+.|..|+++.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 4455566799999986532 2 23334455567777877654
No 428
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.90 E-value=0.3 Score=47.97 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998754
No 429
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.89 E-value=0.57 Score=49.94 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
....+|+|+|..|.|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999987654
No 430
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.88 E-value=0.19 Score=51.22 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-HHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVA-RQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 200 (1079)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 654
No 431
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=87.88 E-value=0.72 Score=51.69 Aligned_cols=101 Identities=15% Similarity=0.233 Sum_probs=58.9
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCcHHHHH-HHHHHHhhh----cCCCC-EEEEEEeCCcc-CHHHHHHHHHHHhCCCc--
Q 044755 166 SVQNALTD-VNVSIVGVYGMGGIGKTTLV-KEVARQARE----DKLFD-LVVFSEVSQTL-DIKKIQQEIAEKLGLVL-- 235 (1079)
Q Consensus 166 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-- 235 (1079)
+.++.+.. .+-..++|+|..|+|||+|| ..+.+.... ..+-+ .++++-+++.. .+.++.+++...-....
T Consensus 151 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 151 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 34555552 23357899999999999995 566666542 12334 47788888654 45666666654322111
Q ss_pred -----cccchHH------HHHHHHHHHH-cCCcEEEEEeCCCC
Q 044755 236 -----EEETGSR------RASRLYERLK-KEEKILIILDNIWK 266 (1079)
Q Consensus 236 -----~~~~~~~------~~~~l~~~l~-~~~~~LlvlDdv~~ 266 (1079)
.+++... ....+-+++. +++.+||++||+-.
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 0111111 1223344444 47999999999854
No 432
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.84 E-value=1.1 Score=59.18 Aligned_cols=84 Identities=26% Similarity=0.375 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCccc-----cchHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAEKLGLVLEE-----ETGSRRASRLYER 250 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 250 (1079)
-+++.|+|.+|+||||||.+++...... =..++|++.....+.. .++.++...+. ....+.+....+.
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 4699999999999999999998887532 2468999988877654 25666654321 1222222222333
Q ss_pred H-HcCCcEEEEEeCCCC
Q 044755 251 L-KKEEKILIILDNIWK 266 (1079)
Q Consensus 251 l-~~~~~~LlvlDdv~~ 266 (1079)
+ .+.+.-+||+|-+..
T Consensus 456 lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHTCCSEEEESCGGG
T ss_pred HHHhcCCcEEEECCHHH
Confidence 3 235666999998754
No 433
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.78 E-value=0.32 Score=51.07 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
.++|.|+|+.|+||||||..+++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998754
No 434
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.68 E-value=0.56 Score=46.71 Aligned_cols=37 Identities=22% Similarity=0.130 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ 216 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 216 (1079)
.|.+.|.||+||||+|..++.....+ .++ +.++.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~-G~~-V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ-GVR-VMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-TCC-EEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-CCC-EEEEEeCC
Confidence 47789999999999999998887543 344 44445544
No 435
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.53 E-value=0.36 Score=50.64 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
..++|.|+|+.|+||||||..+++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 34689999999999999999998764
No 436
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.51 E-value=1.6 Score=42.75 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=32.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHH
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
.|+|=|.-|+||||.++.+++..+.+. .. +++..-.......+..++++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g-~~-v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG-KK-VILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-CC-EEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-Cc-EEEEECCCCCcHHHHHHHHhh
Confidence 367889999999999999999886432 33 333333333334455555543
No 437
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.43 E-value=0.26 Score=49.75 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-.+++|+|..|.|||||++.++--.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999987543
No 438
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=87.40 E-value=0.4 Score=50.03 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ 216 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 216 (1079)
++|+|.|.||+||||+|..++.....+ . ..++-|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~-G-~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM-G-KTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT-T-CCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC-C-CcEEEEcCCC
Confidence 578889999999999999999887632 2 2456666653
No 439
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.37 E-value=0.37 Score=45.41 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQ 199 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~ 199 (1079)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 440
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=87.35 E-value=0.74 Score=49.51 Aligned_cols=50 Identities=22% Similarity=0.260 Sum_probs=35.4
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHH
Q 044755 172 TDVNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKI 223 (1079)
Q Consensus 172 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 223 (1079)
.+...+++.+.|.||+||||+|..++....... ..++-|+.....+....
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g--~~vllid~D~~~~l~~~ 61 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVR--RSVLLLSTDPAHNLSDA 61 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSS--SCEEEEECCSSCHHHHH
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCC--CcEEEEECCCCCChhHH
Confidence 345567888999999999999999988876322 34666776655444433
No 441
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=87.31 E-value=0.74 Score=49.78 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=34.6
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHHHHhhh-cCCCCEEEEEEeCCccCHHH
Q 044755 172 TDVNVSIVGVYGMGGIGKTTLVKEVARQARE-DKLFDLVVFSEVSQTLDIKK 222 (1079)
Q Consensus 172 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~~~~~ 222 (1079)
.+...+++.+.|.||+||||+|..++..... +.. ..++-|+.....+...
T Consensus 14 ~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g-~~vllid~D~~~~l~~ 64 (348)
T 3io3_A 14 QHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPN-EQFLLISTDPAHNLSD 64 (348)
T ss_dssp TCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTT-SCEEEEECCSSCHHHH
T ss_pred cCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCC-CeEEEEECCCCCChHH
Confidence 3455689999999999999999999877651 111 2466666665444433
No 442
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.22 E-value=0.31 Score=49.61 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-.+++|+|+.|.|||||++.+.--.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3699999999999999999987543
No 443
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.22 E-value=0.24 Score=49.27 Aligned_cols=23 Identities=43% Similarity=0.355 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQ 199 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~ 199 (1079)
.+++|+|..|.|||||++.++--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999866
No 444
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.16 E-value=0.31 Score=51.92 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
.++|.|+|+.|+||||||..+++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4699999999999999999998654
No 445
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.09 E-value=0.37 Score=45.85 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQ 199 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~ 199 (1079)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998753
No 446
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=87.08 E-value=1.6 Score=50.17 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=39.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHH-HhCCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAE-KLGLV 234 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~-~l~~~ 234 (1079)
-.++.|.|.+|+||||||.+++.....+. =..++|++... +..++...++. ..+.+
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~~~~~~~ 298 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGLHNRVR 298 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHHHHTTSC
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHHHHcCCC
Confidence 46899999999999999999998875321 13578887755 46677766543 34443
No 447
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=87.07 E-value=0.52 Score=52.77 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=51.1
Q ss_pred ceEEEEEcCCCCcHHHHH-HHHHHHhhhcCCCC-EEEEEEeCCcc-CHHHHHHHHHHHhCCC--------ccccc-----
Q 044755 176 VSIVGVYGMGGIGKTTLV-KEVARQAREDKLFD-LVVFSEVSQTL-DIKKIQQEIAEKLGLV--------LEEET----- 239 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------~~~~~----- 239 (1079)
-..++|+|..|+|||+|| ..+.+... -+ .++++-+++.. .+.++.+++...-... .++..
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 356789999999999995 46766542 45 45788887654 3455555554321110 01100
Q ss_pred hHHHHHHHHHHHH-cCCcEEEEEeCCCC
Q 044755 240 GSRRASRLYERLK-KEEKILIILDNIWK 266 (1079)
Q Consensus 240 ~~~~~~~l~~~l~-~~~~~LlvlDdv~~ 266 (1079)
.......+-+++. +++.+||++||+-.
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 0111233334443 47999999999754
No 448
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.96 E-value=0.34 Score=47.86 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQ 199 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~ 199 (1079)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999865
No 449
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.78 E-value=0.81 Score=45.80 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=25.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044755 173 DVNVSIVGVYGMGGIGKTTLVKEVARQARE 202 (1079)
Q Consensus 173 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (1079)
......|.|.|..|+||||+++.+.+....
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 344678999999999999999999988764
No 450
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.67 E-value=0.62 Score=49.42 Aligned_cols=39 Identities=23% Similarity=0.201 Sum_probs=29.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVS 215 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 215 (1079)
-.+++|+|.+|+|||||++.++........ ..++|++..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~e 73 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAMLE 73 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeCc
Confidence 469999999999999999999887654311 146676654
No 451
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.67 E-value=0.31 Score=49.70 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-.+++|+|..|.|||||++.+..-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4699999999999999999997654
No 452
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.66 E-value=0.38 Score=51.25 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQ 199 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~ 199 (1079)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 453
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=86.60 E-value=0.49 Score=50.01 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=29.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ 216 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 216 (1079)
.++|+|.|.||+||||+|..++....... . .++-|+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G-~-rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMG-K-KVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTT-C-CEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEecCC
Confidence 36888899999999999999988776332 2 355666654
No 454
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.60 E-value=0.33 Score=47.23 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 044755 178 IVGVYGMGGIGKTTLVKEVAR 198 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~ 198 (1079)
-|+|+|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999875
No 455
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.48 E-value=0.37 Score=49.55 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQ 199 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~ 199 (1079)
-.+++|+|..|.|||||++.++--
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 456
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=86.48 E-value=0.32 Score=50.47 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-.+++|+|+.|.|||||++.++--.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4699999999999999999987543
No 457
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=86.47 E-value=0.32 Score=50.75 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-.+++|+|+.|.|||||++.+.--.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3689999999999999999987543
No 458
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.33 E-value=0.24 Score=52.31 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
+..+|+|.|..|+||||+|+.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 459
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.28 E-value=0.38 Score=50.00 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQ 199 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~ 199 (1079)
-.+++|+|..|.|||||++.++--
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999864
No 460
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=86.20 E-value=1.5 Score=48.99 Aligned_cols=96 Identities=19% Similarity=0.235 Sum_probs=56.5
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHH-HHHHHHhhhcCCCC-EEEEEEeCCcc-CHHHHHHHHHHHhCCCc-------
Q 044755 167 VQNALTD-VNVSIVGVYGMGGIGKTTLV-KEVARQAREDKLFD-LVVFSEVSQTL-DIKKIQQEIAEKLGLVL------- 235 (1079)
Q Consensus 167 l~~~l~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------- 235 (1079)
.++.+.. .+-..++|.|..|+|||+|| ..+.+.. +-+ .++++-+++.. .+.++.+++...-....
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 4555542 23357899999999999996 5666542 234 36788888764 45666666554322211
Q ss_pred cccchHH------HHHHHHHHHH-cCCcEEEEEeCCCC
Q 044755 236 EEETGSR------RASRLYERLK-KEEKILIILDNIWK 266 (1079)
Q Consensus 236 ~~~~~~~------~~~~l~~~l~-~~~~~LlvlDdv~~ 266 (1079)
.+++... ....+-+++. +++.+||++||+-.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 0111111 1223334443 47999999999854
No 461
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.17 E-value=0.4 Score=45.29 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998653
No 462
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.17 E-value=2.2 Score=47.85 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=35.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQQEIAE 229 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 229 (1079)
-.++.|.|.+|+||||+|.+++.....+. ..++|++... +..++...++.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSS--CTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCC--CHHHHHHHHHH
Confidence 36899999999999999999998876431 3577776654 34445544443
No 463
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=86.15 E-value=0.96 Score=45.00 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=31.6
Q ss_pred EEEE-EcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHHH
Q 044755 178 IVGV-YGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKIQ 224 (1079)
Q Consensus 178 vi~I-~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 224 (1079)
+|+| -+.||+||||+|..++...... . .++-|+.....+....+
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~-g--~VlliD~D~q~~~~~~~ 46 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQ-G--ETLLIDGDPNRSATGWG 46 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTT-S--CEEEEEECTTCHHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhc-C--CEEEEECCCCCCHHHHh
Confidence 5666 4789999999999999887643 2 57777777655444433
No 464
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=86.14 E-value=0.29 Score=48.86 Aligned_cols=24 Identities=42% Similarity=0.635 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
.+++|+|..|.|||||++.++--.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999987543
No 465
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.13 E-value=0.34 Score=49.48 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-.+++|+|..|.|||||.+.++--.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999987543
No 466
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.12 E-value=0.5 Score=48.18 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
...+|+|.|+.|.||||+++.+.....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999987653
No 467
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=86.11 E-value=0.34 Score=50.15 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
.-.+++|+|..|.|||||++.++--.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34699999999999999999987543
No 468
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=86.10 E-value=0.34 Score=49.07 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-.+++|+|..|.|||||.+.++.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999997654
No 469
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=86.01 E-value=0.35 Score=50.03 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-.+++|+|..|.|||||.+.++--.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3699999999999999999997543
No 470
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=85.99 E-value=0.77 Score=44.84 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQ 199 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~ 199 (1079)
....|.|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458899999999999999998764
No 471
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=85.93 E-value=0.37 Score=49.33 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-.+++|+|..|.|||||++.++--.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4699999999999999999987543
No 472
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.92 E-value=0.35 Score=50.21 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-.+++|+|..|.|||||++.+.--.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4699999999999999999997644
No 473
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=85.83 E-value=0.43 Score=45.27 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQ 199 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~ 199 (1079)
--|.|+|.+|+|||||+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999865
No 474
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=85.75 E-value=0.37 Score=49.46 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-.+++|+|..|.|||||++.++--.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999987544
No 475
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.69 E-value=0.37 Score=49.69 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-.+++|+|..|.|||||.+.++--.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4699999999999999999987543
No 476
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=85.56 E-value=0.44 Score=50.28 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44699999999999999999998765
No 477
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.54 E-value=0.41 Score=50.30 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
-.++.|+|.+|+|||||+..++....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 36999999999999999999987554
No 478
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.54 E-value=1.5 Score=43.54 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=26.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEE
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLV 209 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~ 209 (1079)
...|.|.|..|+||||+++.+.+.... ..+..+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v~ 38 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE-RGIEVQ 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCcc
Confidence 368999999999999999999988763 345543
No 479
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=85.53 E-value=0.45 Score=46.45 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
--|.|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 367899999999999999998653
No 480
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=85.51 E-value=0.5 Score=51.53 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
++|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998753
No 481
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=85.44 E-value=0.35 Score=54.07 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999998654
No 482
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.41 E-value=0.54 Score=48.07 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
...|+|.|..|+||||+++.+.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999998763
No 483
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=85.40 E-value=0.82 Score=46.98 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=31.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCccCHHHH
Q 044755 179 VGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQTLDIKKI 223 (1079)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 223 (1079)
|+|.|.||+||||+|..++....... ..++-|+.....+....
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~~~ 45 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLGQT 45 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChHHH
Confidence 66699999999999999998876432 34667777655554443
No 484
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=85.34 E-value=0.39 Score=49.23 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-.+++|+|..|.|||||.+.++--.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999987544
No 485
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=85.31 E-value=0.63 Score=45.21 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQAR 201 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (1079)
.++.|+|..|+||||++..++++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999977776654
No 486
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.26 E-value=0.57 Score=48.47 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCC-ccCHHHHHHHHHH--HhCCCccccchHHHHHHHHHHH
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQ-TLDIKKIQQEIAE--KLGLVLEEETGSRRASRLYERL 251 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~l~~~l 251 (1079)
.-.+++|+|+.|.|||||++.+....... +...+++.-.. ..-.... ..+.. .++. ........+...+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl-----~~~~l~~~la~aL 95 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGE-----DTKSFADALRAAL 95 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTT-----TBSCHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCC-----CHHHHHHHHHHHH
Confidence 44799999999999999999998765432 12333332211 0000000 00000 0000 0011233455555
Q ss_pred HcCCcEEEEEeCCCCccccccccCCCCCCCCCcEEEEEecChhh
Q 044755 252 KKEEKILIILDNIWKCVDLEAVGIPFGDDHKGCKLLLTARDRNV 295 (1079)
Q Consensus 252 ~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 295 (1079)
.. ++=+|++|+..+......+... ...|.-|++||...++
T Consensus 96 ~~-~p~illlDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 96 RE-DPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HH-CCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSSH
T ss_pred hh-CCCEEEeCCCCCHHHHHHHHHH---HccCCEEEEEeCcchH
Confidence 54 5557888998654332222111 1236678888887653
No 487
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=85.24 E-value=0.51 Score=44.60 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 044755 179 VGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
|+|+|.+|+|||||+..+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999997654
No 488
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=85.20 E-value=0.4 Score=49.61 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-.+++|+|..|.|||||++.+..-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4699999999999999999997543
No 489
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=85.17 E-value=0.4 Score=49.94 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 175 NVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
.-.+++|+|..|.|||||++.++--.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34699999999999999999997544
No 490
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=85.09 E-value=0.55 Score=45.67 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQ 199 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~ 199 (1079)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999864
No 491
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=85.04 E-value=0.36 Score=54.01 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=27.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEe
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEV 214 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 214 (1079)
..+|.|+|.+|+||||++..++.....+. . .++.++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G-~-kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG-L-KPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH-C-CEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC-C-eEEEEec
Confidence 46899999999999999999987765321 2 2455544
No 492
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=84.99 E-value=0.53 Score=51.46 Aligned_cols=27 Identities=22% Similarity=0.049 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 174 VNVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
....+++|+|+.|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345699999999999999999999754
No 493
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=84.98 E-value=0.9 Score=46.55 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=28.9
Q ss_pred HHHHHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 164 LKSVQNALTDV--NVSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 164 ~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
..-+..|+... ...-+.++|++|+|||.+|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 44466677643 24579999999999999999999864
No 494
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=84.93 E-value=0.41 Score=49.26 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-.+++|+|..|.|||||.+.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987543
No 495
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=84.91 E-value=0.42 Score=50.01 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-.+++|+|..|.|||||++.++--.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999997544
No 496
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=84.91 E-value=0.42 Score=49.68 Aligned_cols=25 Identities=36% Similarity=0.312 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
-.+++|+|..|.|||||++.++--.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3699999999999999999987543
No 497
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=84.88 E-value=0.63 Score=52.47 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=40.4
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCEEEEEEeCCc-cCHHHHHHHH
Q 044755 166 SVQNALTD-VNVSIVGVYGMGGIGKTTLVKEVARQAREDKLFDLVVFSEVSQT-LDIKKIQQEI 227 (1079)
Q Consensus 166 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i 227 (1079)
+.++.|.. .+-..++|.|..|+|||+|+.++.+... -+.++++-+++. ..+.++++++
T Consensus 210 rvID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~ 269 (578)
T 3gqb_A 210 RILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWSN----ADVVVYVGSGERGNEMTDVLVEF 269 (578)
T ss_dssp HHHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHTTG
T ss_pred hhhhhcccccCCCEEeeeCCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 34555542 2345789999999999999999987743 467888888865 3444555443
No 498
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=84.86 E-value=0.51 Score=44.67 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 044755 177 SIVGVYGMGGIGKTTLVKEVARQA 200 (1079)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (1079)
.-|.|+|.+|+|||||+..+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999988653
No 499
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=84.79 E-value=0.52 Score=44.64 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 044755 178 IVGVYGMGGIGKTTLVKEVARQ 199 (1079)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~ 199 (1079)
-|+|+|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 500
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=84.75 E-value=0.49 Score=45.31 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 044755 176 VSIVGVYGMGGIGKTTLVKEVARQ 199 (1079)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~ 199 (1079)
.--|+|+|.+|+|||||+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999988643
Done!