Your job contains 1 sequence.
>044757
MEIEQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTE
SSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKE
LEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWL
DTSDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSVHSKVN
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 044757
(227 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2205593 - symbol:FUS5 "FUSCA 5" species:3702 "... 789 1.8e-78 1
DICTYBASE|DDB_G0271282 - symbol:csn7 "proteasome componen... 401 2.4e-37 1
UNIPROTKB|Q2KI56 - symbol:COPS7B "COP9 signalosome comple... 369 5.8e-34 1
UNIPROTKB|E2R501 - symbol:COPS7B "Uncharacterized protein... 369 5.8e-34 1
UNIPROTKB|Q9H9Q2 - symbol:COPS7B "COP9 signalosome comple... 369 5.8e-34 1
MGI|MGI:1349388 - symbol:Cops7b "COP9 (constitutive photo... 368 7.4e-34 1
RGD|1306918 - symbol:Cops7b "COP9 signalosome subunit 7B"... 365 1.5e-33 1
UNIPROTKB|E1C3R1 - symbol:COPS7B "Uncharacterized protein... 350 6.0e-32 1
UNIPROTKB|F1NGK0 - symbol:COPS7A "Uncharacterized protein... 341 5.4e-31 1
FB|FBgn0028836 - symbol:CSN7 "COP9 complex homolog subuni... 331 6.2e-30 1
UNIPROTKB|F1SMV1 - symbol:COPS7B "Uncharacterized protein... 329 1.0e-29 1
UNIPROTKB|F1MAA2 - symbol:Cops7a "Protein Cops7a" species... 323 4.4e-29 1
MGI|MGI:1349400 - symbol:Cops7a "COP9 (constitutive photo... 322 5.6e-29 1
UNIPROTKB|F6QE33 - symbol:COPS7A "Uncharacterized protein... 318 1.5e-28 1
UNIPROTKB|E2RED3 - symbol:COPS7A "Uncharacterized protein... 318 1.5e-28 1
UNIPROTKB|Q9UBW8 - symbol:COPS7A "COP9 signalosome comple... 318 1.5e-28 1
UNIPROTKB|F5GYF7 - symbol:COPS7A "COP9 signalosome comple... 303 5.7e-27 1
UNIPROTKB|F5H248 - symbol:COPS7A "COP9 signalosome comple... 302 7.3e-27 1
UNIPROTKB|F5H7C6 - symbol:COPS7A "COP9 signalosome comple... 292 8.4e-26 1
RGD|1310070 - symbol:Cops7a "COP9 signalosome subunit 7A"... 272 1.1e-23 1
ASPGD|ASPL0000016167 - symbol:acoB species:162425 "Emeric... 227 6.5e-19 1
UNIPROTKB|F5H4U8 - symbol:COPS7A "COP9 signalosome comple... 184 2.3e-14 1
POMBASE|SPAC1751.03 - symbol:SPAC1751.03 "translation ini... 146 4.4e-08 1
WB|WBGene00019543 - symbol:cif-1 species:6239 "Caenorhabd... 144 7.3e-08 1
UNIPROTKB|Q94261 - symbol:cif-1 "COP9/Signalosome and eIF... 144 7.3e-08 1
FB|FBgn0028691 - symbol:Rpn9 "Regulatory particle non-ATP... 141 1.7e-07 1
UNIPROTKB|P84169 - symbol:PSMD13 "26S proteasome non-ATPa... 133 1.6e-06 1
UNIPROTKB|E2R5N5 - symbol:PSMD13 "Uncharacterized protein... 124 1.9e-05 1
UNIPROTKB|Q9UNM6 - symbol:PSMD13 "26S proteasome non-ATPa... 124 1.9e-05 1
ZFIN|ZDB-GENE-040426-1004 - symbol:psmd13 "proteasome (pr... 124 2.3e-05 1
DICTYBASE|DDB_G0287005 - symbol:DDB_G0287005 "proteasome ... 123 2.9e-05 1
UNIPROTKB|F1RGC9 - symbol:PSMD13 "Uncharacterized protein... 122 3.3e-05 1
UNIPROTKB|G8JKV6 - symbol:PSMD13 "26S proteasome non-ATPa... 120 5.0e-05 1
UNIPROTKB|Q5E964 - symbol:PSMD13 "26S proteasome non-ATPa... 120 5.8e-05 1
RGD|1305236 - symbol:Psmd13 "proteasome (prosome, macropa... 119 7.6e-05 1
UNIPROTKB|Q292F0 - symbol:Tango7 "Eukaryotic translation ... 119 7.9e-05 1
ASPGD|ASPL0000017804 - symbol:AN4259 species:162425 "Emer... 120 9.1e-05 2
MGI|MGI:1345192 - symbol:Psmd13 "proteasome (prosome, mac... 114 0.00029 1
TAIR|locus:504955552 - symbol:AT4G19006 "AT4G19006" speci... 112 0.00053 1
UNIPROTKB|Q5ZJ64 - symbol:EIF3M "Eukaryotic translation i... 111 0.00065 1
UNIPROTKB|F1NZE2 - symbol:EIF3M "Eukaryotic translation i... 111 0.00065 1
TAIR|locus:2171998 - symbol:AT5G45620 "AT5G45620" species... 111 0.00068 1
FB|FBgn0033902 - symbol:Tango7 "Transport and Golgi organ... 110 0.00089 1
>TAIR|locus:2205593 [details] [associations]
symbol:FUS5 "FUSCA 5" species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0004708 "MAP kinase
kinase activity" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISS] [GO:0008180
"signalosome" evidence=TAS;IPI] [GO:0009640 "photomorphogenesis"
evidence=RCA;TAS] [GO:0010387 "signalosome assembly" evidence=IMP]
[GO:0010388 "cullin deneddylation" evidence=RCA;IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0016571 "histone methylation" evidence=RCA]
[GO:0016579 "protein deubiquitination" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 GO:GO:0007275
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0009585
GO:GO:0008180 EMBL:U89959 GO:GO:0010388 GO:GO:0010387
eggNOG:NOG289374 HOGENOM:HOG000006003 KO:K12180 OMA:NTLQEWC
EMBL:AF063852 EMBL:AF395065 EMBL:AF395066 EMBL:AF372934
EMBL:AY133518 EMBL:AY087971 IPI:IPI00523211 IPI:IPI00526282
PIR:T52188 RefSeq:NP_563645.1 RefSeq:NP_849576.1 UniGene:At.10718
PDB:3CHM PDBsum:3CHM ProteinModelPortal:Q94JU3 SMR:Q94JU3
IntAct:Q94JU3 STRING:Q94JU3 PaxDb:Q94JU3 PRIDE:Q94JU3
EnsemblPlants:AT1G02090.1 GeneID:839241 KEGG:ath:AT1G02090
GeneFarm:4561 TAIR:At1g02090 InParanoid:Q94JU3 PhylomeDB:Q94JU3
ProtClustDB:CLSN2687617 EvolutionaryTrace:Q94JU3
Genevestigator:Q94JU3 Uniprot:Q94JU3
Length = 260
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 154/225 (68%), Positives = 185/225 (82%)
Query: 1 MEIEQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTE 60
M+IEQKQA +I+Q VK+AST AL LI+EATSHPSLFAFSEIL++PN+ QL+GT
Sbjct: 1 MDIEQKQAEIIDQLVKRASTCKSE--ALGPLIIEATSHPSLFAFSEILALPNVAQLEGTT 58
Query: 61 SSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKE 120
SVY+DLLRLFAHGTW DYK NA LP L PDQ +KLKQL+VLTLAE NKVL YD L+ E
Sbjct: 59 DSVYLDLLRLFAHGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVE 118
Query: 121 LEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWL 180
L+V+NVRELEDFLINECMY GIV+GKL+QL+RCFEV FAAGRDLR GQL NM+ +L+NWL
Sbjct: 119 LDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGNMLHTLSNWL 178
Query: 181 DTSDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSVHSK 225
+TS+N+L IQDKIKWA+ M E DKKH+ E + +++VKKS+ K
Sbjct: 179 NTSENLLISIQDKIKWADNMSEMDKKHRKEAEEGVEEVKKSLSMK 223
>DICTYBASE|DDB_G0271282 [details] [associations]
symbol:csn7 "proteasome component region PCI (PINT)
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008180 "signalosome" evidence=IEA;ISS;IPI] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 dictyBase:DDB_G0271282 GO:GO:0005737
GenomeReviews:CM000151_GR EMBL:AAFI02000006 GO:GO:0008180
eggNOG:NOG289374 KO:K12180 EMBL:DQ309435 RefSeq:XP_645677.1
STRING:Q55BD5 PRIDE:Q55BD5 EnsemblProtists:DDB0233106
GeneID:8617870 KEGG:ddi:DDB_G0271282 OMA:LEISESM
ProtClustDB:CLSZ2497283 Uniprot:Q55BD5
Length = 259
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 83/209 (39%), Positives = 131/209 (62%)
Query: 11 IEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRL 70
++QFV A + G A+V +I +A +HPS+F F E+L +PN+ QL+ TE Y DLL +
Sbjct: 14 LKQFVVLAKS--SKGRAIVSIIEKALNHPSVFVFGELLDMPNVQQLKETEFKNYYDLLLI 71
Query: 71 FAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELE 130
FA+G++ DYK+ LPQL P KLKQL+++ L+ + V+ Y L +++E+ NVRELE
Sbjct: 72 FAYGSFIDYKNKKDSLPQLTPQMITKLKQLTIVFLSSTSNVIPYSVLQEQIEITNVRELE 131
Query: 131 DFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVI 190
D +I+ +Y I+KGKL+Q + E+ F+ GRD++ QL++M+ L NW TS +L I
Sbjct: 132 DLIIDS-IYQNIIKGKLDQKNKHLEIDFSIGRDVQPEQLDSMINCLNNWSSTSQKLLDDI 190
Query: 191 QDKIKWAETMCEEDKKHKMEVKSHLQDVK 219
I ++ + + +K K E +S + K
Sbjct: 191 SGLITHSDKVHLQYRKEKEEFESKFEIAK 219
>UNIPROTKB|Q2KI56 [details] [associations]
symbol:COPS7B "COP9 signalosome complex subunit 7b"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0010388 "cullin deneddylation" evidence=IEA] [GO:0008180
"signalosome" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 GO:GO:0008180 GO:GO:0010388
eggNOG:NOG289374 HOGENOM:HOG000006003 HOVERGEN:HBG051138 KO:K12180
GeneTree:ENSGT00390000013069 EMBL:BC112763 IPI:IPI00714582
RefSeq:NP_001040077.1 UniGene:Bt.26541 STRING:Q2KI56 PRIDE:Q2KI56
Ensembl:ENSBTAT00000006858 GeneID:617995 KEGG:bta:617995 CTD:64708
InParanoid:Q2KI56 OMA:NTLQEWC OrthoDB:EOG4M65JC NextBio:20900938
Uniprot:Q2KI56
Length = 264
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 79/220 (35%), Positives = 132/220 (60%)
Query: 4 EQKQAP-LIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESS 62
EQK + L+EQF+ A +G AL LI + P ++ F E+L + N+ +L ++
Sbjct: 4 EQKPSSNLLEQFILLAKGTSGS--ALTALISQVLEAPGVYVFGELLELANVQELAEGANA 61
Query: 63 VYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELE 122
Y+ LL LFA+GT+ DY +N LP+L Q KLK L++++LA K + Y LLK+LE
Sbjct: 62 AYLQLLNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLE 121
Query: 123 VANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDT 182
+ N+RELED +I E +Y I++GKL+Q + EV F GRD+R + N++++L W D
Sbjct: 122 MRNLRELEDLII-EAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDG 180
Query: 183 SDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSV 222
+ +L I+ ++ A E + + +V++ + ++KK++
Sbjct: 181 CEAVLLGIEQQVLRANQYKENHSRTQQQVEAEVTNIKKTL 220
>UNIPROTKB|E2R501 [details] [associations]
symbol:COPS7B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010388 "cullin deneddylation" evidence=IEA]
[GO:0008180 "signalosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005737 GO:GO:0008180 GO:GO:0010388 KO:K12180
GeneTree:ENSGT00390000013069 CTD:64708 OMA:NTLQEWC
EMBL:AAEX03014439 RefSeq:XP_852665.1 PRIDE:E2R501
Ensembl:ENSCAFT00000017690 GeneID:610156 KEGG:cfa:610156
NextBio:20895723 Uniprot:E2R501
Length = 264
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 79/220 (35%), Positives = 132/220 (60%)
Query: 4 EQKQAP-LIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESS 62
EQK + L+EQF+ A +G AL LI + P ++ F E+L + N+ +L ++
Sbjct: 4 EQKPSSNLLEQFILLAKGTSGS--ALTALISQVLEAPGVYVFGELLELANVQELAEGANA 61
Query: 63 VYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELE 122
Y+ LL LFA+GT+ DY +N LP+L Q KLK L++++LA K + Y LLK+LE
Sbjct: 62 AYLQLLNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLE 121
Query: 123 VANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDT 182
+ N+RELED +I E +Y I++GKL+Q + EV F GRD+R + N++++L W D
Sbjct: 122 MRNLRELEDLII-EAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDG 180
Query: 183 SDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSV 222
+ +L I+ ++ A E + + +V++ + ++KK++
Sbjct: 181 CEAVLLGIEQQVLRANQYKENHSRTQQQVEAEVTNIKKTL 220
>UNIPROTKB|Q9H9Q2 [details] [associations]
symbol:COPS7B "COP9 signalosome complex subunit 7b"
species:9606 "Homo sapiens" [GO:0008180 "signalosome" evidence=IDA]
[GO:0010388 "cullin deneddylation" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 EMBL:CH471063 GO:GO:0008180
GO:GO:0010388 eggNOG:NOG289374 HOGENOM:HOG000006003
HOVERGEN:HBG051138 KO:K12180 CTD:64708 OrthoDB:EOG4M65JC
EMBL:AK022674 EMBL:AK024273 EMBL:AC073476 EMBL:BC010739
EMBL:BC091493 IPI:IPI00009301 IPI:IPI00445209 IPI:IPI00478990
RefSeq:NP_073567.1 UniGene:Hs.335061 ProteinModelPortal:Q9H9Q2
SMR:Q9H9Q2 DIP:DIP-53525N IntAct:Q9H9Q2 STRING:Q9H9Q2
PhosphoSite:Q9H9Q2 DMDM:55976598 PaxDb:Q9H9Q2 PRIDE:Q9H9Q2
DNASU:64708 Ensembl:ENST00000350033 Ensembl:ENST00000373608
Ensembl:ENST00000409091 Ensembl:ENST00000410024 GeneID:64708
KEGG:hsa:64708 UCSC:uc002vsg.1 UCSC:uc002vsh.1
GeneCards:GC02P232646 HGNC:HGNC:16760 HPA:HPA034675
neXtProt:NX_Q9H9Q2 PharmGKB:PA26759 PhylomeDB:Q9H9Q2
ChEMBL:CHEMBL5706 ChiTaRS:COPS7B GenomeRNAi:64708 NextBio:66639
ArrayExpress:Q9H9Q2 Bgee:Q9H9Q2 CleanEx:HS_COPS7B
Genevestigator:Q9H9Q2 GermOnline:ENSG00000144524 Uniprot:Q9H9Q2
Length = 264
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 79/220 (35%), Positives = 132/220 (60%)
Query: 4 EQKQAP-LIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESS 62
EQK + L+EQF+ A +G AL LI + P ++ F E+L + N+ +L ++
Sbjct: 4 EQKPSSNLLEQFILLAKGTSGS--ALTALISQVLEAPGVYVFGELLELANVQELAEGANA 61
Query: 63 VYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELE 122
Y+ LL LFA+GT+ DY +N LP+L Q KLK L++++LA K + Y LLK+LE
Sbjct: 62 AYLQLLNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLE 121
Query: 123 VANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDT 182
+ N+RELED +I E +Y I++GKL+Q + EV F GRD+R + N++++L W D
Sbjct: 122 MRNLRELEDLII-EAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDG 180
Query: 183 SDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSV 222
+ +L I+ ++ A E + + +V++ + ++KK++
Sbjct: 181 CEAVLLGIEQQVLRANQYKENHNRTQQQVEAEVTNIKKTL 220
>MGI|MGI:1349388 [details] [associations]
symbol:Cops7b "COP9 (constitutive photomorphogenic) homolog,
subunit 7b (Arabidopsis thaliana)" species:10090 "Mus musculus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008180
"signalosome" evidence=ISO] [GO:0010388 "cullin deneddylation"
evidence=ISO] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
MGI:MGI:1349388 GO:GO:0005737 GO:GO:0008180 GO:GO:0010388
eggNOG:NOG289374 HOGENOM:HOG000006003 HOVERGEN:HBG051138 KO:K12180
GeneTree:ENSGT00390000013069 CTD:64708 OMA:NTLQEWC
OrthoDB:EOG4M65JC ChiTaRS:COPS7B EMBL:AF071317 EMBL:AK081309
EMBL:AK168740 EMBL:BC012659 IPI:IPI00453769 RefSeq:NP_766562.1
UniGene:Mm.12973 ProteinModelPortal:Q8BV13 SMR:Q8BV13 STRING:Q8BV13
PhosphoSite:Q8BV13 PaxDb:Q8BV13 PRIDE:Q8BV13 DNASU:26895
Ensembl:ENSMUST00000027446 Ensembl:ENSMUST00000121534 GeneID:26895
KEGG:mmu:26895 UCSC:uc007bvr.1 InParanoid:Q8BV13 NextBio:304731
Bgee:Q8BV13 Genevestigator:Q8BV13 GermOnline:ENSMUSG00000026240
Uniprot:Q8BV13
Length = 264
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 79/220 (35%), Positives = 132/220 (60%)
Query: 4 EQKQAP-LIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESS 62
EQK + L+EQF+ A +G AL LI + P ++ F E+L + N+ +L ++
Sbjct: 4 EQKPSSNLLEQFILLAKGTSGS--ALTTLISQVLEAPGVYVFGELLELANVQELAEGANA 61
Query: 63 VYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELE 122
Y+ LL LFA+GT+ DY +N LP+L Q KLK L++++LA K + Y LLK+LE
Sbjct: 62 AYLQLLNLFAYGTYPDYIANKESLPELSVAQQNKLKHLTIVSLASRMKCIPYSVLLKDLE 121
Query: 123 VANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDT 182
+ N+RELED +I E +Y I++GKL+Q + EV F GRD+R + N++++L W D
Sbjct: 122 MRNLRELEDLII-EAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDG 180
Query: 183 SDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSV 222
+ +L I+ ++ A E + + +V++ + ++KK++
Sbjct: 181 CEAVLLGIEQQVLRANQYKENHHRTQQQVEAEVSNIKKTL 220
>RGD|1306918 [details] [associations]
symbol:Cops7b "COP9 signalosome subunit 7B" species:10116
"Rattus norvegicus" [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0008180 "signalosome" evidence=ISO] [GO:0010388 "cullin
deneddylation" evidence=ISO] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 RGD:1306918 KO:K12180 GeneTree:ENSGT00390000013069
CTD:64708 OrthoDB:EOG4M65JC EMBL:CH474004 IPI:IPI00194396
RefSeq:NP_001102277.1 UniGene:Rn.33834 Ensembl:ENSRNOT00000025411
GeneID:363273 KEGG:rno:363273 UCSC:RGD:1306918 NextBio:683080
Uniprot:D3ZU52
Length = 322
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 78/220 (35%), Positives = 132/220 (60%)
Query: 4 EQKQAP-LIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESS 62
EQK + L+EQF+ A +G AL LI + P ++ F E+L + N+ +L ++
Sbjct: 62 EQKPSSNLLEQFILLAKGTSGS--ALTTLISQVLEAPGVYVFGELLELANVQELAEGANA 119
Query: 63 VYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELE 122
Y+ LL LFA+GT+ DY +N LP+L Q KLK L++++LA K + Y LLK+LE
Sbjct: 120 AYLQLLNLFAYGTYPDYIANKESLPELSAAQQNKLKHLTIVSLASRMKCIPYSVLLKDLE 179
Query: 123 VANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDT 182
+ N+RELED +I E +Y I++GKL+Q + EV F GRD++ + N++++L W D
Sbjct: 180 MRNLRELEDLII-EAVYTDIIQGKLDQRNQLLEVDFCIGRDIQKKDINNIVKTLHEWCDG 238
Query: 183 SDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSV 222
+ +L I+ ++ A E + + +V++ + ++KK++
Sbjct: 239 CEAVLLGIEQQVLRANQYKENHHRTQQQVEAEVSNIKKTL 278
>UNIPROTKB|E1C3R1 [details] [associations]
symbol:COPS7B "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008180
"signalosome" evidence=IEA] [GO:0010388 "cullin deneddylation"
evidence=IEA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005737 GO:GO:0008180 GO:GO:0010388
GeneTree:ENSGT00390000013069 OMA:NTLQEWC EMBL:AADN02020653
IPI:IPI00587621 Ensembl:ENSGALT00000012571 Uniprot:E1C3R1
Length = 267
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 77/223 (34%), Positives = 131/223 (58%)
Query: 4 EQKQA-PLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESS 62
EQK + L+EQF+ A +G AL LI + P ++ F E+L + N+ +L ++
Sbjct: 4 EQKPSCNLLEQFILLAKGTSGS--ALTALINQVLEAPGVYVFGELLELTNVQELAEGSNA 61
Query: 63 VYIDLLRLFAHGTWTDY---KSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLK 119
Y LL LFA+GT+ DY +N +LP+L Q KLK L++++LA K + Y LLK
Sbjct: 62 AYFQLLNLFAYGTYPDYVALTANKDNLPELTATQKNKLKHLTIVSLASRMKCIPYSVLLK 121
Query: 120 ELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNW 179
+L++ N+RELED +I E +Y I++GKL+Q + EV F GRD++ + N++++L W
Sbjct: 122 DLDMRNLRELEDLII-EAVYTDIIQGKLDQRNQMLEVDFCIGRDIQKKDISNIVKTLQEW 180
Query: 180 LDTSDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSV 222
D + +L I+ ++ A E + + +V+ + ++KK++
Sbjct: 181 CDGCEAVLLGIEQQVLRANQYKENHHRTQQQVEMEVTNIKKTL 223
>UNIPROTKB|F1NGK0 [details] [associations]
symbol:COPS7A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008180
"signalosome" evidence=IEA] [GO:0010388 "cullin deneddylation"
evidence=IEA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005737 GO:GO:0008180 GO:GO:0010388 OMA:HNVRQLE
GeneTree:ENSGT00390000013069 EMBL:AADN02061125 IPI:IPI00598529
Ensembl:ENSGALT00000023360 Uniprot:F1NGK0
Length = 275
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 74/211 (35%), Positives = 124/211 (58%)
Query: 12 EQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLF 71
EQF+ A G AL LI + P ++ F E+L +P + +L +E S LL +F
Sbjct: 13 EQFLLLAKAARGA--ALASLIHQVLEAPGIYVFGELLDMPAVRELADSEFSPVFHLLTIF 70
Query: 72 AHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELED 131
A GT+ DY + AA+LP L Q KL+ LSV+TLA K + Y LL++L++ NVR+LED
Sbjct: 71 ACGTYADYLAEAANLPPLTEAQKNKLRHLSVVTLAAKIKCIPYSVLLEQLQLKNVRQLED 130
Query: 132 FLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQ 191
+I E +Y +++G L+Q + EV ++ GRD+R +L + ++L W + +LS I+
Sbjct: 131 LVI-EAVYADVLRGSLDQRNQRLEVDYSIGRDIRREELSTITRTLQEWCQGCEVVLSGIE 189
Query: 192 DKIKWAETMCEEDKKHKMEVKSHLQDVKKSV 222
+++ A E+ K +++S + ++KK++
Sbjct: 190 EQVSRANQHKEQQLALKQQIESEVANLKKTI 220
>FB|FBgn0028836 [details] [associations]
symbol:CSN7 "COP9 complex homolog subunit 7" species:7227
"Drosophila melanogaster" [GO:0005515 "protein binding"
evidence=IPI] [GO:0008180 "signalosome" evidence=ISS;IDA;IPI]
[GO:0050821 "protein stabilization" evidence=IMP] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 EMBL:AE013599 GO:GO:0007275 GO:GO:0005737
GO:GO:0007095 GO:GO:0050821 GO:GO:0048477 GO:GO:0046331
GO:GO:0008180 GO:GO:0000338 GO:GO:0019781 eggNOG:NOG289374
KO:K12180 GeneTree:ENSGT00390000013069 OMA:NTLQEWC EMBL:BT012433
RefSeq:NP_610379.2 UniGene:Dm.7312 ProteinModelPortal:Q9V4S8
SMR:Q9V4S8 IntAct:Q9V4S8 MINT:MINT-884309 STRING:Q9V4S8
PaxDb:Q9V4S8 EnsemblMetazoa:FBtr0088742 GeneID:35816
KEGG:dme:Dmel_CG2038 CTD:35816 FlyBase:FBgn0028836
InParanoid:Q9V4S8 OrthoDB:EOG4GHX50 PhylomeDB:Q9V4S8 ChiTaRS:CSN7
GenomeRNAi:35816 NextBio:795352 Bgee:Q9V4S8 GermOnline:CG2038
Uniprot:Q9V4S8
Length = 278
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 77/228 (33%), Positives = 134/228 (58%)
Query: 2 EIEQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTES 61
E + + +E+F A + G AL+ +I +A P++F F E+L+ P++LQL+
Sbjct: 11 EPSKSKETFLEKFCVLAKS--STGAALLDVIRQALEAPNVFVFGELLAEPSVLQLKDGPD 68
Query: 62 SVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKEL 121
S + + L LFA+GT+ +Y++ +L P KL+ L++++LA K + Y LL EL
Sbjct: 69 SKHFETLNLFAYGTYKEYRAQPEKFIELTPAMQKKLQHLTIVSLAIKAKSIPYALLLSEL 128
Query: 122 EVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLD 181
E+ NVR LED +I E +Y I+ GKL Q R EV +A GRD+ G ++++L W++
Sbjct: 129 EIDNVRHLEDIII-EAIYADIIHGKLFQNTRILEVDYAQGRDIPPGYTGQIVETLQAWVN 187
Query: 182 TSDNILSVIQDKIKWAETMCEEDKK--HKMEVKSHLQDVKKSVHSKVN 227
+ D++ + I+ +IK+A E+ K+ +K V+ L ++KK + S+ +
Sbjct: 188 SCDSVSNCIEMQIKYANA--EKSKRLINKERVEQDLINLKKVLKSQTS 233
>UNIPROTKB|F1SMV1 [details] [associations]
symbol:COPS7B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010388 "cullin deneddylation" evidence=IEA]
[GO:0008180 "signalosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005737 GO:GO:0008180 GO:GO:0010388
GeneTree:ENSGT00390000013069 EMBL:CU929067 EMBL:FP015777
Ensembl:ENSSSCT00000023412 OMA:VKTLHEX Uniprot:F1SMV1
Length = 177
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 70/177 (39%), Positives = 109/177 (61%)
Query: 4 EQKQAP-LIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESS 62
EQK + L+EQF+ A +G AL LI + P ++ F E+L + N+ +L ++
Sbjct: 4 EQKPSSNLLEQFILLAKGTSGS--ALTALISQVLEAPGVYVFGELLELANVQELAEGANA 61
Query: 63 VYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELE 122
Y+ LL LFA+GT+ DY +N LP+L Q KLK L++++LA K + Y LL++LE
Sbjct: 62 AYLQLLNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLRDLE 121
Query: 123 VANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNW 179
+ N+RELED +I E +Y I++GKL+Q + EV F GRD+R + N++++L W
Sbjct: 122 MRNLRELEDLII-EAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEW 177
>UNIPROTKB|F1MAA2 [details] [associations]
symbol:Cops7a "Protein Cops7a" species:10116 "Rattus
norvegicus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008180
"signalosome" evidence=IEA] [GO:0010388 "cullin deneddylation"
evidence=IEA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
RGD:1310070 GO:GO:0005737 GO:GO:0008180 GO:GO:0010388 CTD:50813
KO:K12180 OMA:HNVRQLE GeneTree:ENSGT00390000013069 IPI:IPI00365695
RefSeq:NP_001040563.2 UniGene:Rn.154627 PRIDE:F1MAA2
Ensembl:ENSRNOT00000022874 GeneID:312710 KEGG:rno:312710
NextBio:665200 Uniprot:F1MAA2
Length = 277
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 72/211 (34%), Positives = 123/211 (58%)
Query: 12 EQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLF 71
EQF+ A + G AL LI + P ++ F E+L +PN+ +L ++ + LL +F
Sbjct: 13 EQFLLLAKSAKGA--ALATLIHQVLEAPGVYVFGELLDMPNVRELADSDFASTFRLLTVF 70
Query: 72 AHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELED 131
A+GT+ DY + A +LP L Q KL+ LSV+TLA K + Y LL+ L + NVR+LED
Sbjct: 71 AYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLED 130
Query: 132 FLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQ 191
+I E +Y +++G L+Q + EV ++ GRD++ L + Q+L W + +LS I+
Sbjct: 131 LVI-EAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIAQTLQEWCVGCEVVLSGIE 189
Query: 192 DKIKWAETMCEEDKKHKMEVKSHLQDVKKSV 222
+++ A E+ K +++S + ++KK++
Sbjct: 190 EQVSRANLHKEQQLGLKQQIESEVANLKKTI 220
>MGI|MGI:1349400 [details] [associations]
symbol:Cops7a "COP9 (constitutive photomorphogenic) homolog,
subunit 7a (Arabidopsis thaliana)" species:10090 "Mus musculus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008180
"signalosome" evidence=ISO] [GO:0010388 "cullin deneddylation"
evidence=ISO] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
MGI:MGI:1349400 GO:GO:0005737 GO:GO:0008180 GO:GO:0010388 CTD:50813
eggNOG:NOG289374 HOGENOM:HOG000006003 HOVERGEN:HBG051138 KO:K12180
OMA:HNVRQLE OrthoDB:EOG42Z4R2 EMBL:AF071316 EMBL:AK010726
EMBL:AK013155 EMBL:AK019122 EMBL:BC003724 EMBL:AF240179
IPI:IPI00123465 IPI:IPI00317701 RefSeq:NP_001157561.1
RefSeq:NP_036133.1 UniGene:Mm.244536 ProteinModelPortal:Q9CZ04
SMR:Q9CZ04 STRING:Q9CZ04 PhosphoSite:Q9CZ04 PaxDb:Q9CZ04
PRIDE:Q9CZ04 DNASU:26894 Ensembl:ENSMUST00000032220
Ensembl:ENSMUST00000112439 GeneID:26894 KEGG:mmu:26894
UCSC:uc009dsr.2 UCSC:uc009dss.2 GeneTree:ENSGT00390000013069
NextBio:304727 Bgee:Q9CZ04 Genevestigator:Q9CZ04
GermOnline:ENSMUSG00000030127 Uniprot:Q9CZ04
Length = 275
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 72/211 (34%), Positives = 123/211 (58%)
Query: 12 EQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLF 71
EQF+ A + G AL LI + P ++ F E+L +PN+ +L ++ + LL +F
Sbjct: 13 EQFLLLAKSAKGA--ALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVF 70
Query: 72 AHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELED 131
A+GT+ DY + A +LP L Q KL+ LSV+TLA K + Y LL+ L + NVR+LED
Sbjct: 71 AYGTYADYLAEARNLPPLTDAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLED 130
Query: 132 FLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQ 191
+I E +Y +++G L+Q + EV ++ GRD++ L + Q+L W + +LS I+
Sbjct: 131 LVI-EAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIAQTLQEWCVGCEVVLSGIE 189
Query: 192 DKIKWAETMCEEDKKHKMEVKSHLQDVKKSV 222
+++ A E+ K +++S + ++KK++
Sbjct: 190 EQVSRANQHKEQQLGLKQQIESEVANLKKTI 220
>UNIPROTKB|F6QE33 [details] [associations]
symbol:COPS7A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010388 "cullin deneddylation" evidence=IEA]
[GO:0008180 "signalosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005737 GO:GO:0008180 GO:GO:0010388 CTD:50813 KO:K12180
OMA:HNVRQLE GeneTree:ENSGT00390000013069 EMBL:DAAA02014461
IPI:IPI00907970 RefSeq:NP_001098801.2 RefSeq:NP_001157560.1
UniGene:Bt.42676 Ensembl:ENSBTAT00000014754 GeneID:505079
KEGG:bta:505079 NextBio:20866973 Uniprot:F6QE33
Length = 275
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 71/211 (33%), Positives = 123/211 (58%)
Query: 12 EQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLF 71
EQF+ A + G AL LI + P ++ F E+L +PN+ +L ++ + LL +F
Sbjct: 13 EQFLLLAKSAKGA--ALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVF 70
Query: 72 AHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELED 131
A+GT+ DY + A +LP L Q KL+ LSV+TLA K + Y LL+ L + NVR+LED
Sbjct: 71 AYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLED 130
Query: 132 FLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQ 191
+I E +Y +++G L+Q + EV ++ GRD++ L + ++L W + +LS I+
Sbjct: 131 LVI-EAVYADVLRGSLDQRHQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIE 189
Query: 192 DKIKWAETMCEEDKKHKMEVKSHLQDVKKSV 222
+++ A E+ K +++S + ++KK++
Sbjct: 190 EQVSRANQHKEQQLGLKQQIESEVANLKKTI 220
>UNIPROTKB|E2RED3 [details] [associations]
symbol:COPS7A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010388 "cullin deneddylation" evidence=IEA]
[GO:0008180 "signalosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005737 GO:GO:0008180 GO:GO:0010388 CTD:50813 KO:K12180
OMA:HNVRQLE GeneTree:ENSGT00390000013069 EMBL:AAEX03015279
RefSeq:XP_003639987.1 RefSeq:XP_543849.2 Ensembl:ENSCAFT00000023365
GeneID:486722 KEGG:cfa:486722 NextBio:20860455 Uniprot:E2RED3
Length = 275
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 71/211 (33%), Positives = 123/211 (58%)
Query: 12 EQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLF 71
EQF+ A + G AL LI + P ++ F E+L +PN+ +L ++ + LL +F
Sbjct: 13 EQFLLLAKSAKGA--ALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVF 70
Query: 72 AHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELED 131
A+GT+ DY + A +LP L Q KL+ LSV+TLA K + Y LL+ L + NVR+LED
Sbjct: 71 AYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLED 130
Query: 132 FLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQ 191
+I E +Y +++G L+Q + EV ++ GRD++ L + ++L W + +LS I+
Sbjct: 131 LVI-EAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAITRTLQEWCVGCEVVLSGIE 189
Query: 192 DKIKWAETMCEEDKKHKMEVKSHLQDVKKSV 222
+++ A E+ K +++S + ++KK++
Sbjct: 190 EQVSRANQHKEQQLGLKQQIESEVANLKKTI 220
>UNIPROTKB|Q9UBW8 [details] [associations]
symbol:COPS7A "COP9 signalosome complex subunit 7a"
species:9606 "Homo sapiens" [GO:0008180 "signalosome" evidence=IDA]
[GO:0010388 "cullin deneddylation" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 GO:GO:0005737 EMBL:CH471116
GO:GO:0008180 GO:GO:0010388 EMBL:AF210052 EMBL:AB014764
EMBL:AB033603 EMBL:AF193844 EMBL:AK001318 EMBL:AK021721
EMBL:AK022488 EMBL:AK292621 EMBL:BC011789 IPI:IPI00301419
RefSeq:NP_001157565.1 RefSeq:NP_001157566.1 RefSeq:NP_001157567.1
RefSeq:NP_057403.1 UniGene:Hs.530823 ProteinModelPortal:Q9UBW8
SMR:Q9UBW8 DIP:DIP-53412N IntAct:Q9UBW8 MINT:MINT-1393951
STRING:Q9UBW8 PhosphoSite:Q9UBW8 DMDM:55976618 PaxDb:Q9UBW8
PeptideAtlas:Q9UBW8 PRIDE:Q9UBW8 DNASU:50813
Ensembl:ENST00000229251 Ensembl:ENST00000442593
Ensembl:ENST00000534877 Ensembl:ENST00000534947
Ensembl:ENST00000539735 Ensembl:ENST00000543155 GeneID:50813
KEGG:hsa:50813 UCSC:uc001qqh.3 CTD:50813 GeneCards:GC12P006833
HGNC:HGNC:16758 HPA:HPA026915 neXtProt:NX_Q9UBW8 PharmGKB:PA26758
eggNOG:NOG289374 HOGENOM:HOG000006003 HOVERGEN:HBG051138
InParanoid:Q9UBW8 KO:K12180 OMA:HNVRQLE OrthoDB:EOG42Z4R2
PhylomeDB:Q9UBW8 ChiTaRS:COPS7A GenomeRNAi:50813 NextBio:53257
ArrayExpress:Q9UBW8 Bgee:Q9UBW8 CleanEx:HS_COPS7A
Genevestigator:Q9UBW8 GermOnline:ENSG00000111652 Uniprot:Q9UBW8
Length = 275
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 71/211 (33%), Positives = 123/211 (58%)
Query: 12 EQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLF 71
EQF+ A + G AL LI + P ++ F E+L +PN+ +L ++ + LL +F
Sbjct: 13 EQFLLLAKSAKGA--ALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVF 70
Query: 72 AHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELED 131
A+GT+ DY + A +LP L Q KL+ LSV+TLA K + Y LL+ L + NVR+LED
Sbjct: 71 AYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLED 130
Query: 132 FLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQ 191
+I E +Y +++G L+Q + EV ++ GRD++ L + ++L W + +LS I+
Sbjct: 131 LVI-EAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIE 189
Query: 192 DKIKWAETMCEEDKKHKMEVKSHLQDVKKSV 222
+++ A E+ K +++S + ++KK++
Sbjct: 190 EQVSRANQHKEQQLGLKQQIESEVANLKKTI 220
>UNIPROTKB|F5GYF7 [details] [associations]
symbol:COPS7A "COP9 signalosome complex subunit 7a"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005634 GO:GO:0005737 HGNC:HGNC:16758 ChiTaRS:COPS7A
EMBL:AC125494 IPI:IPI01012686 ProteinModelPortal:F5GYF7 SMR:F5GYF7
Ensembl:ENST00000538753 ArrayExpress:F5GYF7 Bgee:F5GYF7
Uniprot:F5GYF7
Length = 213
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 69/204 (33%), Positives = 117/204 (57%)
Query: 12 EQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLF 71
EQF+ A + G AL LI + P ++ F E+L +PN+ +L ++ + LL +F
Sbjct: 13 EQFLLLAKSAKGA--ALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVF 70
Query: 72 AHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELED 131
A+GT+ DY + A +LP L Q KL+ LSV+TLA K + Y LL+ L + NVR+LED
Sbjct: 71 AYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLED 130
Query: 132 FLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQ 191
+I E +Y +++G L+Q + EV ++ GRD++ L + ++L W + +LS I+
Sbjct: 131 LVI-EAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIE 189
Query: 192 DKIKWAETMCEEDKKHKMEVKSHL 215
+++ A E+ K +++S +
Sbjct: 190 EQVSRANQHKEQQLGLKQQIESEV 213
>UNIPROTKB|F5H248 [details] [associations]
symbol:COPS7A "COP9 signalosome complex subunit 7a"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005634 GO:GO:0005737 HGNC:HGNC:16758 ChiTaRS:COPS7A
EMBL:AC125494 IPI:IPI01015612 ProteinModelPortal:F5H248 SMR:F5H248
Ensembl:ENST00000538410 ArrayExpress:F5H248 Bgee:F5H248
Uniprot:F5H248
Length = 262
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 69/202 (34%), Positives = 116/202 (57%)
Query: 12 EQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLF 71
EQF+ A + G AL LI + P ++ F E+L +PN+ +L ++ + LL +F
Sbjct: 13 EQFLLLAKSAKGA--ALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVF 70
Query: 72 AHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELED 131
A+GT+ DY + A +LP L Q KL+ LSV+TLA K + Y LL+ L + NVR+LED
Sbjct: 71 AYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLED 130
Query: 132 FLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQ 191
+I E +Y +++G L+Q + EV ++ GRD++ L + ++L W + +LS I+
Sbjct: 131 LVI-EAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIE 189
Query: 192 DKIKWAETMCEEDKKHKMEVKS 213
+++ A E+ K +++S
Sbjct: 190 EQVSRANQHKEQQLGLKQQIES 211
>UNIPROTKB|F5H7C6 [details] [associations]
symbol:COPS7A "COP9 signalosome complex subunit 7a"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005634 GO:GO:0005737 HGNC:HGNC:16758 ChiTaRS:COPS7A
EMBL:AC125494 IPI:IPI01013606 ProteinModelPortal:F5H7C6 SMR:F5H7C6
Ensembl:ENST00000541866 ArrayExpress:F5H7C6 Bgee:F5H7C6
Uniprot:F5H7C6
Length = 192
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 65/183 (35%), Positives = 108/183 (59%)
Query: 12 EQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLF 71
EQF+ A + G AL LI + P ++ F E+L +PN+ +L ++ + LL +F
Sbjct: 13 EQFLLLAKSAKGA--ALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVF 70
Query: 72 AHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELED 131
A+GT+ DY + A +LP L Q KL+ LSV+TLA K + Y LL+ L + NVR+LED
Sbjct: 71 AYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLED 130
Query: 132 FLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQ 191
+I E +Y +++G L+Q + EV ++ GRD++ L + ++L W + +LS I+
Sbjct: 131 LVI-EAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIE 189
Query: 192 DKI 194
+++
Sbjct: 190 EQV 192
>RGD|1310070 [details] [associations]
symbol:Cops7a "COP9 signalosome subunit 7A" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0008180 "signalosome" evidence=ISO]
[GO:0010388 "cullin deneddylation" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 RGD:1310070 CTD:50813 eggNOG:NOG289374
HOGENOM:HOG000006003 HOVERGEN:HBG051138 KO:K12180 OrthoDB:EOG42Z4R2
IPI:IPI00365695 RefSeq:NP_001040563.2 UniGene:Rn.154627
GeneID:312710 KEGG:rno:312710 NextBio:665200 EMBL:AB259153
RefSeq:NP_001157563.1 STRING:Q1JU69 PRIDE:Q1JU69 UCSC:RGD:1310070
InParanoid:Q1JU69 ArrayExpress:Q1JU69 Genevestigator:Q1JU69
Uniprot:Q1JU69
Length = 229
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 59/173 (34%), Positives = 104/173 (60%)
Query: 50 VPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMN 109
+PN+ +L ++ + LL +FA+GT+ DY + A +LP L Q KL+ LSV+TLA
Sbjct: 1 MPNVRELADSDFASTFRLLTVFAYGTYADYLAEARNLPLLTEAQKNKLRHLSVVTLAAKV 60
Query: 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQL 169
K + Y LL+ L + NVR+LED +I E +Y +++G L+Q + EV ++ GRD++ L
Sbjct: 61 KCIPYAVLLEALALRNVRQLEDLVI-EAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDL 119
Query: 170 ENMMQSLTNWLDTSDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSV 222
+ Q+L W + +LS I++++ A E+ K +++S + ++KK++
Sbjct: 120 SAIAQTLQEWCVGCEVVLSGIEEQVSRANLHKEQQLGLKQQIESEVANLKKTI 172
>ASPGD|ASPL0000016167 [details] [associations]
symbol:acoB species:162425 "Emericella nidulans"
[GO:0008180 "signalosome" evidence=IDA] [GO:0070791 "cleistothecium
development" evidence=IPI] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005737 EMBL:BN001302 EMBL:AACD01000061 GO:GO:0008180
eggNOG:NOG289374 KO:K12180 EMBL:U18265 RefSeq:XP_661227.1
STRING:Q00648 EnsemblFungi:CADANIAT00005117 GeneID:2873045
KEGG:ani:AN3623.2 HOGENOM:HOG000192225 OMA:LLEIFAW
OrthoDB:EOG43NBNQ Uniprot:Q00648
Length = 327
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 61/220 (27%), Positives = 110/220 (50%)
Query: 2 EIEQKQAPLIEQFVKQASTLNGPGPALV-KLIVEATSHPSLFAFSEILSVPNLLQLQGTE 60
++ + ++ F+ + + P + +I ATS P + F+E+L P + L+ +
Sbjct: 3 QVHHRALDALQSFIALTDSSSATSPRYIASIITNATSSPHTYVFAELLERPAVQALRSPD 62
Query: 61 SSV----YIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQ 116
+ Y+ LL +FA GTW DY+ +LP L +QA KL+ L++L+LA K L+Y+
Sbjct: 63 TPAEFQSYLTLLEIFAWGTWQDYQQTP-NLPPLSEEQARKLRLLTLLSLASTIKPLTYEA 121
Query: 117 LLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQF---AAGRDLRHGQLENMM 173
L+ L ++ ELE L+ +Y ++ G+L+ V A RD++ L M+
Sbjct: 122 LMTSLSLSAPSELES-LVTTAIYSSLITGRLSPATNPPTVNVTSVAPLRDVKPSSLPTMI 180
Query: 174 QSLTNWLDTSDNILSVIQDKIKW--AETMCEEDKKHKMEV 211
+LT W +++S I+ +I A++ K+H V
Sbjct: 181 STLTAWEARCGSVISDIETEIAKIRADSAQRRQKEHARAV 220
>UNIPROTKB|F5H4U8 [details] [associations]
symbol:COPS7A "COP9 signalosome complex subunit 7a"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] GO:GO:0005634 GO:GO:0005737 HGNC:HGNC:16758
ChiTaRS:COPS7A EMBL:AC125494 IPI:IPI01014125
ProteinModelPortal:F5H4U8 SMR:F5H4U8 Ensembl:ENST00000544725
ArrayExpress:F5H4U8 Bgee:F5H4U8 Uniprot:F5H4U8
Length = 125
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 44/115 (38%), Positives = 66/115 (57%)
Query: 12 EQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLF 71
EQF+ A + G AL LI + P ++ F E+L +PN+ +L ++ + LL +F
Sbjct: 13 EQFLLLAKSAKGA--ALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVF 70
Query: 72 AHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANV 126
A+GT+ DY + A +LP L Q KL+ LSV+TLA K + Y LL+ L + NV
Sbjct: 71 AYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNV 125
>POMBASE|SPAC1751.03 [details] [associations]
symbol:SPAC1751.03 "translation initiation factor eIF3m"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0005852 "eukaryotic translation
initiation factor 3 complex" evidence=IDA] [GO:0006413
"translational initiation" evidence=IMP] [GO:0016282 "eukaryotic
43S preinitiation complex" evidence=IDA] [GO:0071541 "eukaryotic
translation initiation factor 3 complex, eIF3m" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IC]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 PomBase:SPAC1751.03
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003743 GO:GO:0002183 GO:GO:0016282 GO:GO:0071541 KO:K15030
HAMAP:MF_03012 OMA:IQANKVT OrthoDB:EOG441TM5 EMBL:AB016218
PIR:T43387 PIR:T50090 RefSeq:NP_592913.2 STRING:Q09722
EnsemblFungi:SPAC1751.03.1 GeneID:2542347 KEGG:spo:SPAC1751.03
NextBio:20803407 Uniprot:Q09722
Length = 402
Score = 146 (56.5 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 53/200 (26%), Positives = 102/200 (51%)
Query: 4 EQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSV 63
EQ A L+E ST + A+ +L+ A + P F F +I+++P + QL+ +S+
Sbjct: 190 EQSFAFLLEAVKMDNSTAD---EAVRELVQRAVNSPKYFFFDDIVTLPPVQQLE--QST- 243
Query: 64 YIDLLRLFAHGTWTDYKS----NAAHLP-QLVPDQAV--KLKQLSVLTLAEM--NKVLSY 114
+ LL + + G DY S N AH Q + A+ K+K L++ +LA N LSY
Sbjct: 244 -LQLLGILSGGMTDDYVSWVAENHAHCQHQKFDEDAIARKMKLLTIASLATQAPNNTLSY 302
Query: 115 DQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQ 174
+ K L++ + E+E ++I + + G+V+G+++QL + + ++ R + + +
Sbjct: 303 GDVAKSLKI-DENEVELWII-DVIRAGLVEGRMSQLTKTLSIHRSSYRVFGKHEWVALHE 360
Query: 175 SLTNWLDTSDNILSVIQDKI 194
L W + +L V++ +
Sbjct: 361 KLAKWGSSLRYMLQVMEQPL 380
>WB|WBGene00019543 [details] [associations]
symbol:cif-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 GO:GO:0009792
GO:GO:0005737 GO:GO:0030154 GO:GO:0000003 GO:GO:0048477
GO:GO:0003743 GO:GO:0008180 eggNOG:NOG253821 KO:K15030
HAMAP:MF_03012 EMBL:FO081041 PIR:T30020 RefSeq:NP_500618.1
ProteinModelPortal:Q94261 SMR:Q94261 DIP:DIP-27147N IntAct:Q94261
MINT:MINT-1039802 STRING:Q94261 PaxDb:Q94261
EnsemblMetazoa:K08F11.3.1 EnsemblMetazoa:K08F11.3.2
EnsemblMetazoa:K08F11.3.3 EnsemblMetazoa:K08F11.3.4 GeneID:177236
KEGG:cel:CELE_K08F11.3 UCSC:K08F11.3.1 CTD:177236 WormBase:K08F11.3
GeneTree:ENSGT00390000004456 HOGENOM:HOG000112352 InParanoid:Q94261
OMA:PNTFLLD NextBio:895926 Uniprot:Q94261
Length = 390
Score = 144 (55.7 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 50/169 (29%), Positives = 79/169 (46%)
Query: 35 ATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVP--- 91
A P F+F + + + L+ T + L LF GT DYK A P+ V
Sbjct: 219 AVVDPKSFSFDHLERLSAVKALK-TSDPLMFTALELFISGTLKDYKEFVAKNPKFVTEHL 277
Query: 92 --DQAVKLKQLSVLTL---AEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGK 146
D+ + LK++ +LTL AE +S D+L K+L++ LE+F+I + + V + GK
Sbjct: 278 KVDETILLKKIRLLTLMSLAEEKNEISLDELAKQLDILADETLEEFVI-DAIQVNAISGK 336
Query: 147 LNQLRRCFEVQFAAGRDLRHGQ---LENMMQSL-TNWLDTSDNILSVIQ 191
+N++ R V R Q LE ++ L N T +N+ V Q
Sbjct: 337 INEMARTLIVSSYQHRRFGTEQWVLLEKRLKVLIANLKQTHNNVHEVNQ 385
>UNIPROTKB|Q94261 [details] [associations]
symbol:cif-1 "COP9/Signalosome and eIF3 complex-shared
subunit 1" species:6239 "Caenorhabditis elegans" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0009792 GO:GO:0005737 GO:GO:0030154
GO:GO:0000003 GO:GO:0048477 GO:GO:0003743 GO:GO:0008180
eggNOG:NOG253821 KO:K15030 HAMAP:MF_03012 EMBL:FO081041 PIR:T30020
RefSeq:NP_500618.1 ProteinModelPortal:Q94261 SMR:Q94261
DIP:DIP-27147N IntAct:Q94261 MINT:MINT-1039802 STRING:Q94261
PaxDb:Q94261 EnsemblMetazoa:K08F11.3.1 EnsemblMetazoa:K08F11.3.2
EnsemblMetazoa:K08F11.3.3 EnsemblMetazoa:K08F11.3.4 GeneID:177236
KEGG:cel:CELE_K08F11.3 UCSC:K08F11.3.1 CTD:177236 WormBase:K08F11.3
GeneTree:ENSGT00390000004456 HOGENOM:HOG000112352 InParanoid:Q94261
OMA:PNTFLLD NextBio:895926 Uniprot:Q94261
Length = 390
Score = 144 (55.7 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 50/169 (29%), Positives = 79/169 (46%)
Query: 35 ATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVP--- 91
A P F+F + + + L+ T + L LF GT DYK A P+ V
Sbjct: 219 AVVDPKSFSFDHLERLSAVKALK-TSDPLMFTALELFISGTLKDYKEFVAKNPKFVTEHL 277
Query: 92 --DQAVKLKQLSVLTL---AEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGK 146
D+ + LK++ +LTL AE +S D+L K+L++ LE+F+I + + V + GK
Sbjct: 278 KVDETILLKKIRLLTLMSLAEEKNEISLDELAKQLDILADETLEEFVI-DAIQVNAISGK 336
Query: 147 LNQLRRCFEVQFAAGRDLRHGQ---LENMMQSL-TNWLDTSDNILSVIQ 191
+N++ R V R Q LE ++ L N T +N+ V Q
Sbjct: 337 INEMARTLIVSSYQHRRFGTEQWVLLEKRLKVLIANLKQTHNNVHEVNQ 385
>FB|FBgn0028691 [details] [associations]
symbol:Rpn9 "Regulatory particle non-ATPase 9" species:7227
"Drosophila melanogaster" [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS;NAS] [GO:0006508
"proteolysis" evidence=ISS;IDA] [GO:0005838 "proteasome regulatory
particle" evidence=ISS;IDA] [GO:0004175 "endopeptidase activity"
evidence=IDA] [GO:0007096 "regulation of exit from mitosis"
evidence=IMP] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
EMBL:AE014297 GO:GO:0006508 GO:GO:0004175 GO:GO:0008541
eggNOG:NOG272621 KO:K03039 OMA:LAHPILE GeneTree:ENSGT00390000001802
EMBL:AF145311 EMBL:AY061232 RefSeq:NP_651177.1 RefSeq:NP_732899.1
UniGene:Dm.3423 IntAct:Q7KMP8 STRING:Q7KMP8
EnsemblMetazoa:FBtr0084469 EnsemblMetazoa:FBtr0084470 GeneID:42802
KEGG:dme:Dmel_CG10230 UCSC:CG10230-RA CTD:42802 FlyBase:FBgn0028691
InParanoid:Q7KMP8 OrthoDB:EOG4K0P3Z GenomeRNAi:42802 NextBio:830641
Uniprot:Q7KMP8
Length = 382
Score = 141 (54.7 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 42/164 (25%), Positives = 86/164 (52%)
Query: 41 LFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGT---WTDYKSNAAHLPQLVPDQAVKL 97
++ E+L+ P L L+GTE+ ++LL+ F G + D K + +P L Q VKL
Sbjct: 215 VYNIGELLAHPILESLKGTENEWLMELLKAFNTGDINKFNDMKKIWSKIPDLAA-QEVKL 273
Query: 98 KQ-LSVLTLAEMN-------KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQ 149
+Q +S+L L EM + +S+ + +E ++ +E+E LI + + + +V+G+++Q
Sbjct: 274 RQKISLLCLMEMTFKRSAIERAISFTDIAQETKLP-AKEVE-LLIMKALALDLVRGEIDQ 331
Query: 150 LRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQDK 193
+ + + R L Q+ M +L W+ N+ +++++
Sbjct: 332 VAGVVNMSWVQPRVLNRSQIVGMASTLDTWMGAITNMEKLMENR 375
>UNIPROTKB|P84169 [details] [associations]
symbol:PSMD13 "26S proteasome non-ATPase regulatory subunit
13" species:9031 "Gallus gallus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0022624 HOVERGEN:HBG053740 EMBL:CB017092
EMBL:CN218176 EMBL:BU427099 IPI:IPI00601716 Uniprot:P84169
Length = 376
Score = 133 (51.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 52/187 (27%), Positives = 92/187 (49%)
Query: 3 IEQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESS 62
I+ K P+ EQ ++A TL L L+ E ++ F E+L P L L+ T+
Sbjct: 183 IDVKDLPVSEQ-QERAFTLG-----LAGLLGEG-----VYNFGELLMHPVLESLRSTDRQ 231
Query: 63 VYIDLLRLFAHG---TWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEM-------NKVL 112
ID L F G T+ KS P L ++A+ L+++ +L L EM ++ L
Sbjct: 232 WLIDTLYAFNSGNVETFQALKSAWGQQPDLAANEALLLQKIQLLCLMEMTFTRPANHRQL 291
Query: 113 SYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENM 172
+++++ K +V V E+E L+ + + VG+VKG ++++ + + + R L Q++ M
Sbjct: 292 TFEEIAKSAKVT-VNEVE-LLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGM 349
Query: 173 MQSLTNW 179
L W
Sbjct: 350 KDRLEFW 356
>UNIPROTKB|E2R5N5 [details] [associations]
symbol:PSMD13 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0007127 "meiosis I" evidence=IEA] [GO:0005838
"proteasome regulatory particle" evidence=IEA] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 GO:GO:0007127 GO:GO:0005838 CTD:5719
KO:K03039 OMA:LAHPILE GeneTree:ENSGT00390000001802
EMBL:AAEX03011305 RefSeq:XP_848457.1 ProteinModelPortal:E2R5N5
Ensembl:ENSCAFT00000039828 GeneID:475934 KEGG:cfa:475934
NextBio:20851679 Uniprot:E2R5N5
Length = 376
Score = 124 (48.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 39/149 (26%), Positives = 74/149 (49%)
Query: 41 LFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGT---WTDYKSNAAHLPQLVPDQAVKL 97
+F F E+L P L L+ T+ ID L F G + K+ P L ++A L
Sbjct: 210 VFNFGELLMHPVLESLRSTDRQWLIDTLYAFNSGNVERFQTLKTAWGQQPDLAANEAQLL 269
Query: 98 KQLSVLTLAEM-------NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQL 150
+++ +L L EM ++ L+++++ K ++ V E+E L+ + + VG+VKG ++++
Sbjct: 270 RKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKIT-VNEVE-LLVMKALSVGLVKGSIDEV 327
Query: 151 RRCFEVQFAAGRDLRHGQLENMMQSLTNW 179
+ + + R L Q++ M L W
Sbjct: 328 DKRVHMTWVQPRVLDLQQIKGMKDRLEFW 356
>UNIPROTKB|Q9UNM6 [details] [associations]
symbol:PSMD13 "26S proteasome non-ATPase regulatory subunit
13" species:9606 "Homo sapiens" [GO:0005838 "proteasome regulatory
particle" evidence=IEA] [GO:0007127 "meiosis I" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
[GO:0000502 "proteasome complex" evidence=TAS] [GO:0000075 "cell
cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S transition of
mitotic cell cycle" evidence=TAS] [GO:0000084 "S phase of mitotic
cell cycle" evidence=TAS] [GO:0000209 "protein polyubiquitination"
evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0002474 "antigen processing and presentation of peptide antigen
via MHC class I" evidence=TAS] [GO:0002479 "antigen processing and
presentation of exogenous peptide antigen via MHC class I,
TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] Reactome:REACT_13505 Reactome:REACT_578
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
Reactome:REACT_111217 InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005829 Reactome:REACT_111102 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0006915 GO:GO:0010467 GO:GO:0016071
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981 GO:GO:0044281
GO:GO:0000082 GO:GO:0051436 GO:GO:0000216 GO:GO:0007127
GO:GO:0000209 GO:GO:0000084 GO:GO:0031145 GO:GO:0051437
EMBL:AC136475 GO:GO:0006521 Reactome:REACT_383 EMBL:CH471278
GO:GO:0005838 CTD:5719 eggNOG:NOG272621 HOGENOM:HOG000216633
HOVERGEN:HBG053740 KO:K03039 OrthoDB:EOG42JNRJ EMBL:AB009398
EMBL:AF107837 EMBL:AF086708 EMBL:BT007307 EMBL:AK094775
EMBL:BC001100 EMBL:BC001747 IPI:IPI00375380 IPI:IPI00549672
RefSeq:NP_002808.3 RefSeq:NP_787128.2 UniGene:Hs.134688
ProteinModelPortal:Q9UNM6 DIP:DIP-27576N IntAct:Q9UNM6
MINT:MINT-1161305 STRING:Q9UNM6 PhosphoSite:Q9UNM6 DMDM:20978558
PaxDb:Q9UNM6 PRIDE:Q9UNM6 DNASU:5719 Ensembl:ENST00000431206
Ensembl:ENST00000532097 GeneID:5719 KEGG:hsa:5719 UCSC:uc001lol.2
UCSC:uc001loo.2 GeneCards:GC11P000226 H-InvDB:HIX0009340
HGNC:HGNC:9558 HPA:HPA038692 MIM:603481 neXtProt:NX_Q9UNM6
PharmGKB:PA33904 InParanoid:Q9UNM6 OMA:INQVEQV PhylomeDB:Q9UNM6
ChiTaRS:PSMD13 GenomeRNAi:5719 NextBio:22226 ArrayExpress:Q9UNM6
Bgee:Q9UNM6 CleanEx:HS_PSMD13 Genevestigator:Q9UNM6
GermOnline:ENSG00000185627 Uniprot:Q9UNM6
Length = 376
Score = 124 (48.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 39/149 (26%), Positives = 74/149 (49%)
Query: 41 LFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGT---WTDYKSNAAHLPQLVPDQAVKL 97
+F F E+L P L L+ T+ ID L F G + K+ P L ++A L
Sbjct: 210 VFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSGNVERFQTLKTAWGQQPDLAANEAQLL 269
Query: 98 KQLSVLTLAEM-------NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQL 150
+++ +L L EM ++ L+++++ K ++ V E+E L+ + + VG+VKG ++++
Sbjct: 270 RKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKIT-VNEVE-LLVMKALSVGLVKGSIDEV 327
Query: 151 RRCFEVQFAAGRDLRHGQLENMMQSLTNW 179
+ + + R L Q++ M L W
Sbjct: 328 DKRVHMTWVQPRVLDLQQIKGMKDRLEFW 356
>ZFIN|ZDB-GENE-040426-1004 [details] [associations]
symbol:psmd13 "proteasome (prosome, macropain) 26S
subunit, non-ATPase, 13" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0000502 "proteasome complex" evidence=IEA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
ZFIN:ZDB-GENE-040426-1004 GO:GO:0000502 HOGENOM:HOG000216633
HOVERGEN:HBG053740 EMBL:AY398402 IPI:IPI00497953 UniGene:Dr.25959
STRING:Q6TGV4 PRIDE:Q6TGV4 ArrayExpress:Q6TGV4 Bgee:Q6TGV4
Uniprot:Q6TGV4
Length = 413
Score = 124 (48.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 48/201 (23%), Positives = 93/201 (46%)
Query: 3 IEQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESS 62
+E K P EQ ++A TL L L+ E ++ F E+L P L L+ T+
Sbjct: 220 VEAKDLPEAEQ-QERAFTLG-----LAGLLGEG-----VYNFGELLMHPVLESLRNTDKQ 268
Query: 63 VYIDLLRLFAHGTWTDY---KSNAAHLPQLVPDQAVKLKQLSVLTLAEM-------NKVL 112
ID L F G + K+ P L +A ++++ +L + EM N+ L
Sbjct: 269 WLIDTLFAFNAGNVEKFQALKTAWGQQPDLAAQEAKLMQKIQLLCVMEMTFTRPANNRQL 328
Query: 113 SYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENM 172
S+ ++ + ++ V E+E L+ + + VG++KG ++++ + + + R L Q++ M
Sbjct: 329 SFQEIAQSAKI-QVNEVE-LLVMKALSVGLIKGSIDEVEKKVHMTWVQPRVLDVQQIKGM 386
Query: 173 MQSLTNWLDTSDNILSVIQDK 193
L W N+ +++ +
Sbjct: 387 KDRLDFWCGDVKNMAVLVEQR 407
>DICTYBASE|DDB_G0287005 [details] [associations]
symbol:DDB_G0287005 "proteasome component region PCI
(PINT) domain-containing protein" species:44689 "Dictyostelium
discoideum" [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 dictyBase:DDB_G0287005 GO:GO:0005737
GenomeReviews:CM000153_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003743 EMBL:AAFI02000095 eggNOG:NOG253821 KO:K15030
HAMAP:MF_03012 RefSeq:XP_637434.1 STRING:Q54KZ8
EnsemblProtists:DDB0238518 GeneID:8625903 KEGG:ddi:DDB_G0287005
OMA:IQANKVT Uniprot:Q54KZ8
Length = 401
Score = 123 (48.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 56/206 (27%), Positives = 99/206 (48%)
Query: 4 EQKQAPLIEQF-VK--QASTLNGPGPA---LVKLIVEATSHPSLFAFSEILSVPNLLQLQ 57
++KQ L QF VK Q T A V++ +E+ S L+ +L +P + L+
Sbjct: 185 KEKQRMLSHQFLVKYLQTFTKEDSQEAQEDAVRVCIESISLQELYQSDYLLDLPAVQYLE 244
Query: 58 GTE---SSVYIDLLRLFAHGTWTDY----KSNAAHLPQ--LVPDQAV-KLKQLSVLTL-A 106
G+ +S+ +L+++FA + + N L L D + K++ LS+ TL +
Sbjct: 245 GSTVSANSLTYELMKIFATEQLDSFLQFQQKNPNFLSTIGLSNDDCLQKIRLLSLATLTS 304
Query: 107 EMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRH 166
E +KV Y + K L++ + E+E ++IN M ++ KL+QL R V + R
Sbjct: 305 EQSKV-PYSLISKMLQI-DENEVEMWVIN-AMEGDLLDAKLDQLNRIVNVNSSTQRVFNK 361
Query: 167 GQLENMMQSLTNWLDTSDNILSVIQD 192
Q + Q + W + N+L VI++
Sbjct: 362 SQWSQLGQRFSVWKSSVKNLLQVIEN 387
>UNIPROTKB|F1RGC9 [details] [associations]
symbol:PSMD13 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007127 "meiosis I" evidence=IEA] [GO:0005838
"proteasome regulatory particle" evidence=IEA] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 GO:GO:0007127 GO:GO:0005838 KO:K03039
OMA:LAHPILE GeneTree:ENSGT00390000001802 EMBL:CU928488
RefSeq:XP_003124275.1 UniGene:Ssc.55246 Ensembl:ENSSSCT00000015909
GeneID:100517815 KEGG:ssc:100517815 Uniprot:F1RGC9
Length = 376
Score = 122 (48.0 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 39/149 (26%), Positives = 73/149 (48%)
Query: 41 LFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGT---WTDYKSNAAHLPQLVPDQAVKL 97
+F F E+L P L L+ T+ ID L F G + K+ P L ++A L
Sbjct: 210 VFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSGNVERFQTLKTAWGQQPDLAANEAQLL 269
Query: 98 KQLSVLTLAEM-------NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQL 150
+++ +L L EM ++ L+++++ K ++ V E+E L+ + + VG+VKG ++++
Sbjct: 270 RKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKIT-VNEVE-LLVMKALSVGLVKGSIDEV 327
Query: 151 RRCFEVQFAAGRDLRHGQLENMMQSLTNW 179
+ + + R L Q+ M L W
Sbjct: 328 DKRVHMTWVQPRVLDLQQIRGMKDRLEFW 356
>UNIPROTKB|G8JKV6 [details] [associations]
symbol:PSMD13 "26S proteasome non-ATPase regulatory subunit
13" species:9913 "Bos taurus" [GO:0007127 "meiosis I" evidence=IEA]
[GO:0005838 "proteasome regulatory particle" evidence=IEA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 GO:GO:0007127
GO:GO:0005838 OMA:LAHPILE GeneTree:ENSGT00390000001802
EMBL:DAAA02032478 EMBL:DAAA02032479 Ensembl:ENSBTAT00000002650
Uniprot:G8JKV6
Length = 345
Score = 120 (47.3 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 38/149 (25%), Positives = 74/149 (49%)
Query: 41 LFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGT---WTDYKSNAAHLPQLVPDQAVKL 97
+F F E+L P L L+ T+ ID L F G + K+ P L ++A L
Sbjct: 179 VFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSGNVERFQTLKTAWGQQPDLAANEAQLL 238
Query: 98 KQLSVLTLAEM-------NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQL 150
+++ +L L EM ++ L+++++ + ++ V E+E L+ + + VG+VKG ++++
Sbjct: 239 RKIQLLCLMEMTFTRPANHRQLTFEEIARSAKIT-VNEVE-LLVMKALSVGLVKGSIDEV 296
Query: 151 RRCFEVQFAAGRDLRHGQLENMMQSLTNW 179
+ + + R L Q++ M L W
Sbjct: 297 DKRVHMTWVQPRVLDLQQIKGMKDRLEFW 325
>UNIPROTKB|Q5E964 [details] [associations]
symbol:PSMD13 "26S proteasome non-ATPase regulatory subunit
13" species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0022624 EMBL:BT021056 EMBL:BC102200
IPI:IPI00718435 RefSeq:NP_001019703.1 UniGene:Bt.21635
STRING:Q5E964 PRIDE:Q5E964 GeneID:513525 KEGG:bta:513525 CTD:5719
eggNOG:NOG272621 HOGENOM:HOG000216633 HOVERGEN:HBG053740
InParanoid:Q5E964 KO:K03039 OrthoDB:EOG42JNRJ NextBio:20870894
Uniprot:Q5E964
Length = 376
Score = 120 (47.3 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 38/149 (25%), Positives = 74/149 (49%)
Query: 41 LFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGT---WTDYKSNAAHLPQLVPDQAVKL 97
+F F E+L P L L+ T+ ID L F G + K+ P L ++A L
Sbjct: 210 VFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSGNVERFQTLKTAWGQQPDLAANEAQLL 269
Query: 98 KQLSVLTLAEM-------NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQL 150
+++ +L L EM ++ L+++++ + ++ V E+E L+ + + VG+VKG ++++
Sbjct: 270 RKIQLLCLMEMTFTRPANHRQLTFEEIARSAKIT-VNEVE-LLVMKALSVGLVKGSIDEV 327
Query: 151 RRCFEVQFAAGRDLRHGQLENMMQSLTNW 179
+ + + R L Q++ M L W
Sbjct: 328 DKRVHMTWVQPRVLDLQQIKGMKDRLEFW 356
>RGD|1305236 [details] [associations]
symbol:Psmd13 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 13" species:10116 "Rattus norvegicus" [GO:0005838
"proteasome regulatory particle" evidence=IEA;ISO] [GO:0007127
"meiosis I" evidence=IEA;ISO] [GO:0022624 "proteasome accessory
complex" evidence=ISO;ISS] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 RGD:1305236 GO:GO:0007127 EMBL:CH473953 GO:GO:0022624
GO:GO:0005838 CTD:5719 eggNOG:NOG272621 HOGENOM:HOG000216633
KO:K03039 OrthoDB:EOG42JNRJ OMA:LAHPILE
GeneTree:ENSGT00390000001802 EMBL:BC158732 IPI:IPI00202283
RefSeq:NP_001102395.1 UniGene:Rn.16918 IntAct:B0BN93 STRING:B0BN93
PhosphoSite:B0BN93 World-2DPAGE:0004:B0BN93 PRIDE:B0BN93
Ensembl:ENSRNOT00000019642 GeneID:365388 KEGG:rno:365388
UCSC:RGD:1305236 NextBio:687344 Genevestigator:B0BN93
Uniprot:B0BN93
Length = 376
Score = 119 (46.9 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 38/149 (25%), Positives = 74/149 (49%)
Query: 41 LFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGT---WTDYKSNAAHLPQLVPDQAVKL 97
+F F E+L P L L+ T+ ID L F G + KS P L ++A L
Sbjct: 210 VFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSGDVDRFQTLKSAWGQQPDLAANEAQLL 269
Query: 98 KQLSVLTLAEM-------NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQL 150
+++ +L L EM ++ L+++++ K ++ V ++E L+ + + VG+V+G ++++
Sbjct: 270 RKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKIT-VNKVE-LLVMKALSVGLVRGSIDEV 327
Query: 151 RRCFEVQFAAGRDLRHGQLENMMQSLTNW 179
+ + + R L Q++ M L W
Sbjct: 328 DKRVHMTWVQPRVLDLQQIKGMKDRLELW 356
>UNIPROTKB|Q292F0 [details] [associations]
symbol:Tango7 "Eukaryotic translation initiation factor 3
subunit M" species:46245 "Drosophila pseudoobscura pseudoobscura"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005794 "Golgi
apparatus" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] InterPro:IPR000717 InterPro:IPR003607 Pfam:PF01399
SMART:SM00088 SMART:SM00471 GO:GO:0005794 GO:GO:0003824
GO:GO:0009306 GO:GO:0003743 EMBL:CM000071 GenomeReviews:CM000071_GR
eggNOG:NOG253821 KO:K15030 HAMAP:MF_03012 OMA:PNTFLLD
OrthoDB:EOG4TTF0C RefSeq:XP_001360337.1 GeneID:4803654
KEGG:dpo:Dpse_GA20974 FlyBase:FBgn0080963 InParanoid:Q292F0
Uniprot:Q292F0
Length = 387
Score = 119 (46.9 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 44/168 (26%), Positives = 77/168 (45%)
Query: 29 VKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQ 88
+K IV A + P+ F +L++ + L+G + DLL +F Y +
Sbjct: 206 MKCIVTALADPNTFLLDPLLALKPVRFLEG---DLIHDLLSIFVSDKLPSYVQFYEDHKE 262
Query: 89 LVPDQAVK----LKQLSVLT---LAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVG 141
V Q + +K++ +LT LAE N +++D L KEL++ E+E F+I + +
Sbjct: 263 FVNSQGLNHEQNMKKMRLLTFMQLAESNPEMTFDTLTKELQITE-DEVEPFVI-QVLKTK 320
Query: 142 IVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSV 189
+V+ +L+Q R + R Q E + L W +N+ SV
Sbjct: 321 LVRARLDQANRKVHISSTMHRTFGAPQWEQLRDLLQAW---KENLSSV 365
>ASPGD|ASPL0000017804 [details] [associations]
symbol:AN4259 species:162425 "Emericella nidulans"
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0003674 "molecular_function" evidence=ND] [GO:0006413
"translational initiation" evidence=IEA] [GO:0016282 "eukaryotic
43S preinitiation complex" evidence=IEA] [GO:0071541 "eukaryotic
translation initiation factor 3 complex, eIF3m" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005737 EMBL:BN001302 GO:GO:0003743 eggNOG:NOG253821
KO:K15030 HAMAP:MF_03012 OMA:IQANKVT EMBL:AACD01000069
RefSeq:XP_661863.1 EnsemblFungi:CADANIAT00004396 GeneID:2873678
KEGG:ani:AN4259.2 HOGENOM:HOG000234940 OrthoDB:EOG441TM5
Uniprot:Q5B5C1
Length = 459
Score = 120 (47.3 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 45/184 (24%), Positives = 91/184 (49%)
Query: 29 VKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVY--IDLLRLFAHGTWTDYKSNAAHL 86
V+ + A +HP++F F+ + + + L+ +++ ++ +++ + D+ S A +
Sbjct: 236 VRALTSALTHPAVFDFTPLTAADAVQALRSSDAPLFELLEIFTADTLDAYEDFIS-ATPV 294
Query: 87 PQLVPDQAVK-----LK-QLSVLTLAEMN-----------KVLSYDQLLKELEVANVREL 129
++PD A+ L+ ++ +LTLA + + LSY+ + L V E+
Sbjct: 295 ENILPDNALAPHAEALQTKIRLLTLASLAAAATTTTGPSARSLSYETIASALRVPQ-EEV 353
Query: 130 EDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSV 189
E ++I + + G+V+GKL+QLR F V A R Q + L W + +N+L V
Sbjct: 354 EKWVI-DTIRAGLVEGKLSQLRSEFLVHRATYRVFGEKQWAEVQGRLMVWRRSLENVLGV 412
Query: 190 IQDK 193
I+ +
Sbjct: 413 IRSE 416
Score = 36 (17.7 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 3 IEQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHP 39
IE + L E+F LN P V+ V P
Sbjct: 10 IEGSFSELAEEFAAYLDALNKPDDTTVQTEVAPLLQP 46
>MGI|MGI:1345192 [details] [associations]
symbol:Psmd13 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 13" species:10090 "Mus musculus" [GO:0000502
"proteasome complex" evidence=IEA] [GO:0004175 "endopeptidase
activity" evidence=ISA] [GO:0005838 "proteasome regulatory
particle" evidence=IDA] [GO:0007127 "meiosis I" evidence=IMP]
[GO:0008152 "metabolic process" evidence=ISA] [GO:0022624
"proteasome accessory complex" evidence=IDA] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 MGI:MGI:1345192 GO:GO:0004175
GO:GO:0007127 GO:GO:0005838 CTD:5719 eggNOG:NOG272621
HOGENOM:HOG000216633 HOVERGEN:HBG053740 KO:K03039 OrthoDB:EOG42JNRJ
OMA:LAHPILE ChiTaRS:PSMD13 EMBL:AF107838 EMBL:AK051078
EMBL:AK075936 EMBL:AK081160 EMBL:AK145654 EMBL:AK163017
EMBL:AK167169 EMBL:AK171504 IPI:IPI00126048 RefSeq:NP_036005.1
UniGene:Mm.29760 ProteinModelPortal:Q9WVJ2 IntAct:Q9WVJ2
STRING:Q9WVJ2 PhosphoSite:Q9WVJ2 PaxDb:Q9WVJ2 PRIDE:Q9WVJ2
Ensembl:ENSMUST00000026560 GeneID:23997 KEGG:mmu:23997
GeneTree:ENSGT00390000001802 InParanoid:Q9WVJ2 NextBio:303913
Bgee:Q9WVJ2 Genevestigator:Q9WVJ2 GermOnline:ENSMUSG00000025487
Uniprot:Q9WVJ2
Length = 376
Score = 114 (45.2 bits), Expect = 0.00029, P = 0.00029
Identities = 37/149 (24%), Positives = 73/149 (48%)
Query: 41 LFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGT---WTDYKSNAAHLPQLVPDQAVKL 97
+F F E+L P L L+ T+ ID L F G + K P L ++A L
Sbjct: 210 VFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSGAVDRFQTLKCAWGQQPDLAANEAQLL 269
Query: 98 KQLSVLTLAEM-------NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQL 150
+++ +L L EM ++ L+++++ K ++ V ++E L+ + + VG+V+G ++++
Sbjct: 270 RKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKIT-VNKVE-LLVMKALSVGLVRGSIDEV 327
Query: 151 RRCFEVQFAAGRDLRHGQLENMMQSLTNW 179
+ + + R L Q++ M L W
Sbjct: 328 DKRVHMTWVQPRVLDLQQIKGMKDRLELW 356
>TAIR|locus:504955552 [details] [associations]
symbol:AT4G19006 "AT4G19006" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS] [GO:0005634 "nucleus"
evidence=TAS] [GO:0030163 "protein catabolic process" evidence=TAS]
[GO:0000502 "proteasome complex" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005829 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0030163 GO:GO:0000502
eggNOG:NOG272621 HOGENOM:HOG000216633 KO:K03039 OMA:LAHPILE
EMBL:AY230842 EMBL:AK117761 IPI:IPI00529601 RefSeq:NP_680721.2
UniGene:At.21756 ProteinModelPortal:Q8GYA6 IntAct:Q8GYA6
STRING:Q8GYA6 PaxDb:Q8GYA6 PRIDE:Q8GYA6 EnsemblPlants:AT4G19006.1
GeneID:827638 KEGG:ath:AT4G19006 TAIR:At4g19006 InParanoid:Q8GYA6
PhylomeDB:Q8GYA6 ProtClustDB:CLSN2690225 Genevestigator:Q8GYA6
Uniprot:Q8GYA6
Length = 386
Score = 112 (44.5 bits), Expect = 0.00053, P = 0.00053
Identities = 45/172 (26%), Positives = 81/172 (47%)
Query: 31 LIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKS-----NAA- 84
L + A +++ F E+L+ P L L GT +L+ F HG Y+ NA+
Sbjct: 205 LSLSALLGENIYNFGELLAHPILKSLLGTNVEWLYHILQAFNHGDLVQYQELCRVHNASL 264
Query: 85 -HLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVR---ELEDF--LINECM 138
P LV ++ L+++++L L E+ + L V R +ED L+ + +
Sbjct: 265 SAQPALVENEKKLLEKINILCLIEIIFSRPAEDRTIPLSVIAERTKLSIEDVEHLLMKSL 324
Query: 139 YVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLD-TSDNILSV 189
V +++G L+Q+ V +A R L Q++++ L +W+D +LSV
Sbjct: 325 SVHLIEGILDQVNGTVYVSWAQPRVLGIPQIKSLRDQLDSWVDKVHTTLLSV 376
>UNIPROTKB|Q5ZJ64 [details] [associations]
symbol:EIF3M "Eukaryotic translation initiation factor 3
subunit M" species:9031 "Gallus gallus" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003743 GO:GO:0005852 CTD:10480
eggNOG:NOG253821 HOGENOM:HOG000112351 HOVERGEN:HBG107844 KO:K15030
OrthoDB:EOG4FFD21 HAMAP:MF_03012 GeneTree:ENSGT00390000004456
OMA:PNTFLLD EMBL:AJ720570 IPI:IPI00587349 RefSeq:NP_001006406.1
UniGene:Gga.2429 STRING:Q5ZJ64 PRIDE:Q5ZJ64
Ensembl:ENSGALT00000019782 GeneID:421602 KEGG:gga:421602
InParanoid:Q5ZJ64 NextBio:20824344 ArrayExpress:Q5ZJ64
Uniprot:Q5ZJ64
Length = 374
Score = 111 (44.1 bits), Expect = 0.00065, P = 0.00065
Identities = 38/157 (24%), Positives = 77/157 (49%)
Query: 30 KLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDY----KSNAAH 85
+ IV A P+ F F +L++ + L+G + DLL +F Y ++N
Sbjct: 206 RCIVRALKDPNTFLFDHLLALKPVKFLEG---ELIHDLLTIFVSAKLVSYVKFYQNNKDF 262
Query: 86 LPQL--VPDQAV-KLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGI 142
+ L + +Q + K++ L+ + +A NK +S+D + +EL++ ++E F+I + + +
Sbjct: 263 IDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQELQIG-ADDVEAFVI-DAVKTKM 320
Query: 143 VKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNW 179
V K++Q +R V + R Q + + +L W
Sbjct: 321 VYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNTW 357
>UNIPROTKB|F1NZE2 [details] [associations]
symbol:EIF3M "Eukaryotic translation initiation factor 3
subunit M" species:9031 "Gallus gallus" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005852 GeneTree:ENSGT00390000004456 OMA:PNTFLLD
EMBL:AADN02040176 IPI:IPI00822513 Ensembl:ENSGALT00000040077
ArrayExpress:F1NZE2 Uniprot:F1NZE2
Length = 375
Score = 111 (44.1 bits), Expect = 0.00065, P = 0.00065
Identities = 38/157 (24%), Positives = 77/157 (49%)
Query: 30 KLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDY----KSNAAH 85
+ IV A P+ F F +L++ + L+G + DLL +F Y ++N
Sbjct: 207 RCIVRALKDPNTFLFDHLLALKPVKFLEG---ELIHDLLTIFVSAKLVSYVKFYQNNKDF 263
Query: 86 LPQL--VPDQAV-KLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGI 142
+ L + +Q + K++ L+ + +A NK +S+D + +EL++ ++E F+I + + +
Sbjct: 264 IDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQELQIG-ADDVEAFVI-DAVKTKM 321
Query: 143 VKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNW 179
V K++Q +R V + R Q + + +L W
Sbjct: 322 VYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNTW 358
>TAIR|locus:2171998 [details] [associations]
symbol:AT5G45620 "AT5G45620" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
[GO:0000502 "proteasome complex" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006096 "glycolysis" evidence=RCA] [GO:0007010 "cytoskeleton
organization" evidence=RCA] [GO:0009651 "response to salt stress"
evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
[GO:0010498 "proteasomal protein catabolic process" evidence=RCA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0046686 "response to cadmium ion" evidence=RCA]
[GO:0051604 "protein maturation" evidence=RCA] [GO:0051788
"response to misfolded protein" evidence=RCA] [GO:0080129
"proteasome core complex assembly" evidence=RCA] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000502 eggNOG:NOG272621
HOGENOM:HOG000216633 KO:K03039 OMA:INQVEQV ProtClustDB:CLSN2690225
EMBL:AY093136 EMBL:BT003384 EMBL:AY230841 IPI:IPI00516535
RefSeq:NP_199375.2 UniGene:At.23294 UniGene:At.74818
ProteinModelPortal:Q8RWF0 IntAct:Q8RWF0 STRING:Q8RWF0 PaxDb:Q8RWF0
PRIDE:Q8RWF0 EnsemblPlants:AT5G45620.1 GeneID:834602
KEGG:ath:AT5G45620 TAIR:At5g45620 InParanoid:Q8RWF0
PhylomeDB:Q8RWF0 ArrayExpress:Q8RWF0 Genevestigator:Q8RWF0
Uniprot:Q8RWF0
Length = 386
Score = 111 (44.1 bits), Expect = 0.00068, P = 0.00068
Identities = 41/174 (23%), Positives = 84/174 (48%)
Query: 31 LIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKS-----NAAH 85
L + A +++ F E+L+ P L L GT +L+ F HG Y+ NA+
Sbjct: 205 LSLSALLGENIYNFGELLAHPILKSLLGTNVEWLYHILQAFNHGDLVQYQELCRVHNASL 264
Query: 86 L--PQLVPDQAVKLKQLSVLTLAEM-------NKVLSYDQLLKELEVANVRELEDFLINE 136
+ P LV ++ L+++++L L E+ ++ + ++ E ++ ++E L+
Sbjct: 265 IAQPALVENEKKLLEKINILCLIEIIFSRPAEDRTIPLS-IIAERTKLSIEDVEHLLMKS 323
Query: 137 CMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLD-TSDNILSV 189
+ V +++G ++Q+ V +A R L Q++ + L +W+D +LSV
Sbjct: 324 -LSVHLIEGIIDQVNGTIYVSWAQPRVLGIPQIKALRDQLDSWVDKVHTTLLSV 376
>FB|FBgn0033902 [details] [associations]
symbol:Tango7 "Transport and Golgi organization 7"
species:7227 "Drosophila melanogaster" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IDA]
[GO:0007030 "Golgi organization" evidence=IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0009306 "protein secretion"
evidence=IMP] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0048812 "neuron projection morphogenesis"
evidence=IMP] InterPro:IPR000717 InterPro:IPR003607 Pfam:PF01399
SMART:SM00088 SMART:SM00471 EMBL:AE013599 GO:GO:0005829
GO:GO:0005794 GO:GO:0005875 GO:GO:0003824 GO:GO:0009306
GO:GO:0003743 GO:GO:0007030 eggNOG:NOG253821 KO:K15030
HAMAP:MF_03012 GeneTree:ENSGT00390000004456 OMA:PNTFLLD
EMBL:AY118924 RefSeq:NP_610932.1 UniGene:Dm.3068
ProteinModelPortal:Q7JVI3 SMR:Q7JVI3 IntAct:Q7JVI3 STRING:Q7JVI3
PaxDb:Q7JVI3 PRIDE:Q7JVI3 EnsemblMetazoa:FBtr0087579 GeneID:36565
KEGG:dme:Dmel_CG8309 CTD:36565 FlyBase:FBgn0033902
InParanoid:Q7JVI3 OrthoDB:EOG4TTF0C PhylomeDB:Q7JVI3
GenomeRNAi:36565 NextBio:799232 Bgee:Q7JVI3 Uniprot:Q7JVI3
Length = 387
Score = 110 (43.8 bits), Expect = 0.00089, P = 0.00089
Identities = 41/165 (24%), Positives = 75/165 (45%)
Query: 29 VKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQ 88
+K IV A + P+ F +LS+ + L+G + DLL +F Y +
Sbjct: 206 MKCIVTALADPNTFLLDPLLSLKPVRFLEG---DLIHDLLSIFVSEKLPAYVQFYEDHRE 262
Query: 89 LVPDQAVK----LKQLSVLT---LAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVG 141
V Q + +K++ +LT LAE + ++++ L KEL++ N E+E F+I E +
Sbjct: 263 FVNSQGLNHEQNMKKMRLLTFMQLAESSPEMTFETLTKELQI-NEDEVEPFVI-EVLKTK 320
Query: 142 IVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNI 186
+V+ +L+Q + + R Q E + L W + +
Sbjct: 321 LVRARLDQANQKVHISSTMHRTFGAPQWEQLRDLLQAWKENLSTV 365
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.372 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 227 227 0.00079 113 3 11 22 0.41 33
32 0.41 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 43
No. of states in DFA: 603 (64 KB)
Total size of DFA: 175 KB (2102 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.55u 0.18s 22.73t Elapsed: 00:00:01
Total cpu time: 22.56u 0.18s 22.74t Elapsed: 00:00:01
Start: Fri May 10 08:41:42 2013 End: Fri May 10 08:41:43 2013