BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044757
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CHM|A Chain A, Crystal Structure Of Pci Domain From A. Thaliana Cop9
Signalosome Subunit 7 (Csn7)
Length = 169
Score = 254 bits (648), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 124/170 (72%), Positives = 142/170 (83%), Gaps = 2/170 (1%)
Query: 2 EIEQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTES 61
+IEQKQA +I+Q VK+AST AL LI+EATSHPSLFAFSEIL++PN+ QL+GT
Sbjct: 2 DIEQKQAEIIDQLVKRASTCKSE--ALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTD 59
Query: 62 SVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKEL 121
SVY+DLLRLFAHGTW DYK NA LP L PDQ +KLKQL+VLTLAE NKVL YD L+ EL
Sbjct: 60 SVYLDLLRLFAHGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVEL 119
Query: 122 EVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLEN 171
+V+NVRELEDFLINECMY GIV+GKL+QL+RCFEV FAAGRDLR GQL N
Sbjct: 120 DVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGN 169
>pdb|2VVY|A Chain A, Structure Of Vaccinia Virus Protein B14
pdb|2VVY|B Chain B, Structure Of Vaccinia Virus Protein B14
pdb|2VVY|C Chain C, Structure Of Vaccinia Virus Protein B14
pdb|2VVY|D Chain D, Structure Of Vaccinia Virus Protein B14
Length = 169
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 53 LLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVL 103
LL + V+ID+ L + W D K A + +PD+ ++++S +
Sbjct: 74 LLSFRDDAELVFIDIRELVKNXPWDDVKDCAEIIRCYIPDEQKTIREISAI 124
>pdb|1H6J|A Chain A, The Three-Dimensional Structure Of Capsule-Specific
Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From
Escherichia Coli
pdb|1H6J|B Chain B, The Three-Dimensional Structure Of Capsule-Specific
Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From
Escherichia Coli
pdb|1H7E|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Apo-Enzyme
pdb|1H7E|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Apo-Enzyme
pdb|1H7F|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cmp Complex
pdb|1H7F|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cmp Complex
pdb|1H7G|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Ctp Mg2+ Complex
pdb|1H7G|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Ctp Mg2+ Complex
pdb|1H7H|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cdp Complex
pdb|1H7H|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cdp Complex
pdb|1H7T|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Here Complex With Cmp-Neuac,
Cmp-Neuac Complex
pdb|1H7T|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Here Complex With Cmp-Neuac,
Cmp-Neuac Complex
pdb|1GQ9|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Ctp At 100k
pdb|1GQ9|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Ctp At 100k
pdb|1GQC|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Cmp-Kdo At 100k
pdb|1GQC|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Cmp-Kdo At 100k
Length = 245
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 26 PALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAH 85
P+ VK++V F+ S I N E + Y+ + ++A+ D N +
Sbjct: 137 PSTVKVVVNTRQDALYFSRSPIPYPRN------AEKARYLKHVGIYAY--RRDVLQNYSQ 188
Query: 86 LPQLVPDQAVKLKQLSVL 103
LP+ +P+QA L+QL ++
Sbjct: 189 LPESMPEQAESLEQLRLM 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,105,333
Number of Sequences: 62578
Number of extensions: 220091
Number of successful extensions: 603
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 599
Number of HSP's gapped (non-prelim): 5
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)