Query 044757
Match_columns 227
No_of_seqs 145 out of 577
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 11:06:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3chm_A COP9 signalosome comple 100.0 8.3E-50 2.8E-54 328.6 17.1 167 2-170 2-168 (169)
2 4b4t_O 26S proteasome regulato 100.0 4E-35 1.4E-39 269.1 9.3 168 26-195 212-389 (393)
3 3txn_A 26S proteasome regulato 99.5 2E-13 6.8E-18 125.2 13.0 179 6-189 196-389 (394)
4 4b4t_P 26S proteasome regulato 99.1 1.1E-10 3.6E-15 108.3 8.8 163 27-202 260-438 (445)
5 4b4t_R RPN7, 26S proteasome re 99.0 5.7E-09 2E-13 96.0 13.1 153 9-163 226-397 (429)
6 3t5x_A PCI domain-containing p 98.8 3.9E-09 1.3E-13 88.4 5.3 97 63-160 82-194 (203)
7 4b4t_Q 26S proteasome regulato 98.6 1.2E-07 4.1E-12 83.7 7.9 119 61-191 296-424 (434)
8 1ufm_A COP9 complex subunit 4; 98.5 3E-07 1E-11 66.7 7.4 64 96-161 15-78 (84)
9 4b4t_S RPN3, 26S proteasome re 98.2 6E-07 2E-11 84.7 4.1 94 62-156 343-445 (523)
10 3t5v_B Nuclear mRNA export pro 97.9 9.2E-06 3.1E-10 75.6 6.1 95 64-159 299-429 (455)
11 4b0z_A RPN12, 26S proteasome r 95.6 0.035 1.2E-06 46.7 7.6 74 62-136 136-214 (229)
12 1wi9_A Protein C20ORF116 homol 94.4 0.068 2.3E-06 37.2 5.0 55 101-157 11-65 (72)
13 2hzt_A Putative HTH-type trans 90.4 2.7 9.3E-05 30.2 9.6 70 109-183 25-95 (107)
14 3r0a_A Putative transcriptiona 89.2 1.2 4E-05 33.3 6.9 82 103-190 33-118 (123)
15 1qgp_A Protein (double strande 89.1 1.2 4.1E-05 30.8 6.3 47 99-147 19-65 (77)
16 1qbj_A Protein (double-strande 88.6 1.6 5.5E-05 30.6 6.7 56 98-156 14-69 (81)
17 3bpv_A Transcriptional regulat 88.0 4.1 0.00014 29.6 9.2 47 109-157 41-87 (138)
18 1lj9_A Transcriptional regulat 87.8 4 0.00014 30.0 9.1 43 109-153 41-83 (144)
19 2d1h_A ST1889, 109AA long hypo 87.0 5.8 0.0002 27.5 9.2 75 103-184 28-105 (109)
20 2gxg_A 146AA long hypothetical 86.8 5.6 0.00019 29.2 9.5 43 109-153 48-90 (146)
21 1ub9_A Hypothetical protein PH 86.4 4.7 0.00016 27.7 8.4 39 109-149 28-66 (100)
22 1i1g_A Transcriptional regulat 86.3 0.9 3.1E-05 34.1 4.7 71 108-180 15-88 (141)
23 3df8_A Possible HXLR family tr 86.0 3.9 0.00013 29.7 8.0 80 96-184 27-107 (111)
24 1z7u_A Hypothetical protein EF 85.1 8.7 0.0003 27.7 9.6 69 110-183 34-103 (112)
25 2fbh_A Transcriptional regulat 84.8 6.9 0.00024 28.6 9.1 46 108-155 49-94 (146)
26 1sfx_A Conserved hypothetical 84.6 6.1 0.00021 27.3 8.3 39 109-149 32-70 (109)
27 4aik_A Transcriptional regulat 84.4 4.8 0.00016 30.6 8.1 57 103-161 38-94 (151)
28 4hbl_A Transcriptional regulat 84.2 4.8 0.00016 30.1 8.0 45 109-155 53-97 (149)
29 4b4t_T 26S proteasome regulato 84.1 3.5 0.00012 35.3 7.9 95 40-134 118-222 (274)
30 4a5n_A Uncharacterized HTH-typ 83.9 11 0.00038 28.5 9.9 80 98-184 28-108 (131)
31 1yyv_A Putative transcriptiona 82.8 7.5 0.00025 29.2 8.5 80 96-182 35-115 (131)
32 3s2w_A Transcriptional regulat 82.8 4.9 0.00017 30.3 7.6 49 109-159 62-110 (159)
33 2fsw_A PG_0823 protein; alpha- 82.7 6.5 0.00022 28.1 7.8 68 109-181 36-104 (107)
34 3k0l_A Repressor protein; heli 82.5 6 0.00021 29.9 8.0 49 109-159 58-106 (162)
35 3cuo_A Uncharacterized HTH-typ 82.1 5.3 0.00018 27.5 7.0 46 102-149 29-74 (99)
36 2dbb_A Putative HTH-type trans 82.0 2.4 8.2E-05 32.2 5.5 47 102-150 14-63 (151)
37 3g3z_A NMB1585, transcriptiona 81.6 11 0.00037 27.7 9.0 41 111-153 45-85 (145)
38 3lwf_A LIN1550 protein, putati 81.6 3.3 0.00011 32.5 6.3 58 97-157 30-87 (159)
39 3bja_A Transcriptional regulat 81.5 4.9 0.00017 29.2 6.9 45 109-155 45-89 (139)
40 2cfx_A HTH-type transcriptiona 81.5 2.1 7.3E-05 32.4 5.0 47 102-150 10-59 (144)
41 3t8r_A Staphylococcus aureus C 81.5 2.6 8.9E-05 32.3 5.5 47 108-157 25-71 (143)
42 2p5v_A Transcriptional regulat 81.3 2.3 7.8E-05 32.9 5.2 47 102-150 15-64 (162)
43 2kko_A Possible transcriptiona 81.2 8.9 0.0003 27.5 8.1 63 110-182 37-99 (108)
44 2cg4_A Regulatory protein ASNC 81.2 2.7 9.1E-05 32.0 5.5 47 102-150 13-62 (152)
45 3deu_A Transcriptional regulat 80.7 7.8 0.00027 29.7 8.2 50 109-160 66-115 (166)
46 2ia0_A Putative HTH-type trans 80.4 2.8 9.7E-05 33.0 5.5 42 107-150 27-71 (171)
47 3nrv_A Putative transcriptiona 80.2 4.6 0.00016 29.9 6.4 43 109-153 52-94 (148)
48 2rdp_A Putative transcriptiona 80.1 7.3 0.00025 28.7 7.6 45 110-156 55-99 (150)
49 3kp7_A Transcriptional regulat 79.9 5.8 0.0002 29.5 7.0 45 108-154 48-94 (151)
50 1xn7_A Hypothetical protein YH 79.5 3 0.0001 28.9 4.8 43 100-144 5-47 (78)
51 2eth_A Transcriptional regulat 79.4 9.9 0.00034 28.3 8.2 43 110-154 57-99 (154)
52 2y75_A HTH-type transcriptiona 79.3 3.9 0.00013 30.2 5.8 37 108-146 23-59 (129)
53 2htj_A P fimbrial regulatory p 79.0 7.4 0.00025 26.3 6.7 37 108-146 11-47 (81)
54 1s3j_A YUSO protein; structura 78.9 8.7 0.0003 28.4 7.7 43 109-153 49-91 (155)
55 2oqg_A Possible transcriptiona 78.5 15 0.00051 25.9 10.6 37 110-148 33-69 (114)
56 3i4p_A Transcriptional regulat 78.2 8.7 0.0003 29.6 7.7 48 101-150 7-57 (162)
57 3eco_A MEPR; mutlidrug efflux 77.8 9.8 0.00034 27.6 7.6 47 110-158 46-92 (139)
58 2e1c_A Putative HTH-type trans 77.6 2.1 7.3E-05 33.7 4.0 46 102-149 32-80 (171)
59 2jt1_A PEFI protein; solution 77.6 2.9 0.0001 29.0 4.2 35 109-145 22-56 (77)
60 3cjn_A Transcriptional regulat 77.3 12 0.0004 28.1 8.1 43 109-153 64-106 (162)
61 3bj6_A Transcriptional regulat 76.9 14 0.00047 27.2 8.3 43 109-153 52-94 (152)
62 3oop_A LIN2960 protein; protei 76.5 4.3 0.00015 29.9 5.2 43 110-154 50-92 (143)
63 2pn6_A ST1022, 150AA long hypo 76.3 2.9 9.8E-05 31.7 4.3 48 101-150 7-57 (150)
64 2f2e_A PA1607; transcription f 76.0 13 0.00044 28.3 8.0 42 109-152 35-76 (146)
65 2cyy_A Putative HTH-type trans 75.7 2.5 8.5E-05 32.2 3.8 42 102-145 12-53 (151)
66 3bdd_A Regulatory protein MARR 75.7 14 0.00048 26.7 8.0 42 110-153 44-85 (142)
67 3f6o_A Probable transcriptiona 75.6 8.1 0.00028 28.1 6.5 39 109-149 29-67 (118)
68 3jth_A Transcription activator 75.3 11 0.00036 26.2 6.8 39 110-150 35-73 (98)
69 1ylf_A RRF2 family protein; st 75.1 5.1 0.00018 30.6 5.5 38 108-147 27-64 (149)
70 2v79_A DNA replication protein 75.0 9.3 0.00032 29.1 6.9 74 96-181 35-111 (135)
71 3hsr_A HTH-type transcriptiona 75.0 9.7 0.00033 28.0 6.9 50 108-159 47-96 (140)
72 2k02_A Ferrous iron transport 74.7 3.3 0.00011 29.5 3.9 44 101-146 6-49 (87)
73 2fbi_A Probable transcriptiona 74.3 19 0.00066 25.9 8.4 48 110-159 49-96 (142)
74 2nnn_A Probable transcriptiona 71.6 16 0.00055 26.3 7.4 45 110-156 51-95 (140)
75 3boq_A Transcriptional regulat 71.0 9 0.00031 28.6 6.0 46 108-155 59-104 (160)
76 2fa5_A Transcriptional regulat 70.5 9.9 0.00034 28.4 6.1 43 109-153 61-103 (162)
77 1oyi_A Double-stranded RNA-bin 70.2 6.8 0.00023 27.6 4.6 45 95-145 18-62 (82)
78 3bro_A Transcriptional regulat 70.2 17 0.00058 26.2 7.2 42 111-154 50-91 (141)
79 3gpv_A Transcriptional regulat 70.0 27 0.00094 26.6 8.6 105 111-224 16-134 (148)
80 3t5v_A Nuclear mRNA export pro 69.4 12 0.0004 32.7 7.0 61 74-134 177-247 (316)
81 1uly_A Hypothetical protein PH 69.4 41 0.0014 26.8 13.7 35 110-146 32-66 (192)
82 3e6m_A MARR family transcripti 69.0 7.5 0.00026 29.3 5.1 44 110-155 66-109 (161)
83 3k69_A Putative transcription 68.7 9 0.00031 29.9 5.6 47 108-157 25-71 (162)
84 1jgs_A Multiple antibiotic res 68.5 19 0.00063 26.0 7.1 46 109-156 46-91 (138)
85 1xd7_A YWNA; structural genomi 68.4 8.5 0.00029 29.2 5.3 44 102-148 15-58 (145)
86 2pg4_A Uncharacterized protein 68.2 12 0.0004 25.9 5.6 45 98-144 16-62 (95)
87 1u2w_A CADC repressor, cadmium 68.2 11 0.00036 27.7 5.6 38 109-148 54-91 (122)
88 3tgn_A ADC operon repressor AD 68.1 15 0.00052 26.8 6.6 46 112-159 52-97 (146)
89 3pqk_A Biofilm growth-associat 68.1 19 0.00066 25.0 6.9 39 110-150 35-73 (102)
90 3ech_A MEXR, multidrug resista 67.5 8.3 0.00028 28.3 5.0 45 109-155 49-93 (142)
91 2heo_A Z-DNA binding protein 1 67.4 10 0.00035 25.0 4.9 44 98-145 14-57 (67)
92 1tbx_A ORF F-93, hypothetical 66.6 28 0.00097 23.9 7.5 45 109-155 20-68 (99)
93 2w25_A Probable transcriptiona 66.5 11 0.00036 28.5 5.5 42 107-150 17-61 (150)
94 2hr3_A Probable transcriptiona 66.2 26 0.00089 25.5 7.6 45 109-155 48-92 (147)
95 1r1u_A CZRA, repressor protein 66.1 14 0.00048 26.1 5.8 38 110-149 38-75 (106)
96 2pex_A Transcriptional regulat 65.9 28 0.00094 25.6 7.8 43 109-153 59-101 (153)
97 1ku9_A Hypothetical protein MJ 65.5 35 0.0012 24.5 11.4 52 98-153 30-81 (152)
98 3cdh_A Transcriptional regulat 64.6 29 0.00098 25.6 7.6 44 108-153 54-97 (155)
99 2nyx_A Probable transcriptiona 64.1 23 0.00079 26.8 7.1 45 110-156 58-102 (168)
100 3gp4_A Transcriptional regulat 62.2 37 0.0013 25.8 7.9 32 112-149 3-35 (142)
101 2vn2_A DNAD, chromosome replic 61.9 18 0.00061 26.9 5.9 57 89-149 30-87 (128)
102 1z91_A Organic hydroperoxide r 60.2 14 0.00048 27.0 5.1 41 110-152 53-93 (147)
103 3f3x_A Transcriptional regulat 57.4 44 0.0015 24.2 7.5 45 113-159 52-96 (144)
104 2p7v_B Sigma-70, RNA polymeras 56.9 13 0.00045 24.0 3.9 28 109-138 23-50 (68)
105 3u2r_A Regulatory protein MARR 55.9 61 0.0021 24.2 9.0 50 109-160 60-109 (168)
106 3f6v_A Possible transcriptiona 55.5 43 0.0015 25.5 7.3 41 109-151 69-109 (151)
107 4b8x_A SCO5413, possible MARR- 54.7 42 0.0014 24.9 7.1 58 100-160 41-98 (147)
108 1y0u_A Arsenical resistance op 54.2 25 0.00085 24.2 5.3 36 110-147 42-77 (96)
109 2a61_A Transcriptional regulat 53.0 60 0.0021 23.2 12.2 48 109-158 45-92 (145)
110 2qvo_A Uncharacterized protein 52.8 37 0.0013 23.3 6.0 47 109-157 28-74 (95)
111 3fm5_A Transcriptional regulat 52.7 25 0.00085 25.8 5.4 51 105-157 48-98 (150)
112 1ku3_A Sigma factor SIGA; heli 52.7 16 0.00056 23.9 3.9 28 109-138 28-55 (73)
113 1j5y_A Transcriptional regulat 51.8 36 0.0012 26.7 6.5 49 95-145 19-69 (187)
114 2bv6_A MGRA, HTH-type transcri 51.4 31 0.0011 24.9 5.7 44 109-154 49-92 (142)
115 2x4h_A Hypothetical protein SS 51.4 36 0.0012 24.7 6.1 55 88-146 10-64 (139)
116 2frh_A SARA, staphylococcal ac 50.3 28 0.00096 25.2 5.2 48 110-159 52-99 (127)
117 2jsc_A Transcriptional regulat 50.0 31 0.0011 24.9 5.4 38 110-149 33-70 (118)
118 1tty_A Sigma-A, RNA polymerase 49.4 19 0.00064 24.6 3.9 28 109-138 36-63 (87)
119 3nqo_A MARR-family transcripti 48.9 89 0.0031 24.0 8.8 50 108-159 54-103 (189)
120 2p4w_A Transcriptional regulat 48.9 1E+02 0.0035 24.7 14.4 39 109-149 26-64 (202)
121 1on2_A Transcriptional regulat 48.6 36 0.0012 24.9 5.7 44 101-146 12-55 (142)
122 3t72_q RNA polymerase sigma fa 48.5 17 0.00059 26.0 3.7 28 109-138 37-64 (99)
123 3c57_A Two component transcrip 48.3 41 0.0014 23.3 5.6 27 110-138 41-67 (95)
124 1tc3_C Protein (TC3 transposas 48.2 15 0.00052 21.1 2.9 22 112-134 22-43 (51)
125 2qww_A Transcriptional regulat 47.5 24 0.00083 25.9 4.6 43 109-153 53-97 (154)
126 3hug_A RNA polymerase sigma fa 47.4 17 0.00059 25.0 3.5 27 110-138 52-78 (92)
127 1z05_A Transcriptional regulat 46.2 24 0.00083 31.3 5.1 49 95-145 37-85 (429)
128 2wte_A CSA3; antiviral protein 46.2 39 0.0013 28.1 6.0 45 109-157 164-208 (244)
129 1r1t_A Transcriptional repress 45.2 64 0.0022 23.4 6.5 37 110-148 58-94 (122)
130 2o8x_A Probable RNA polymerase 45.2 55 0.0019 20.5 6.9 26 111-138 31-56 (70)
131 2fbk_A Transcriptional regulat 44.9 36 0.0012 26.0 5.4 41 111-153 86-126 (181)
132 1r7j_A Conserved hypothetical 43.3 82 0.0028 22.0 11.4 68 101-185 12-79 (95)
133 1q1h_A TFE, transcription fact 42.9 24 0.00083 24.8 3.8 38 107-146 29-66 (110)
134 3kor_A Possible Trp repressor; 41.7 54 0.0018 24.6 5.5 37 100-141 66-102 (119)
135 2qlz_A Transcription factor PF 41.5 34 0.0012 28.3 4.9 45 108-157 175-219 (232)
136 2w48_A Sorbitol operon regulat 39.1 58 0.002 27.6 6.2 51 97-149 7-57 (315)
137 2lkp_A Transcriptional regulat 39.0 67 0.0023 22.6 5.7 37 110-148 44-80 (119)
138 3jw4_A Transcriptional regulat 38.6 14 0.00046 27.3 1.8 44 110-155 56-99 (148)
139 3ulq_B Transcriptional regulat 38.1 47 0.0016 22.9 4.6 27 110-138 43-69 (90)
140 2lfw_A PHYR sigma-like domain; 37.3 24 0.00082 26.6 3.1 27 110-138 108-134 (157)
141 1je8_A Nitrate/nitrite respons 36.0 60 0.0021 21.7 4.8 27 110-138 35-61 (82)
142 2k6x_A Sigma-A, RNA polymerase 35.9 35 0.0012 22.8 3.4 33 101-134 13-50 (72)
143 2jpc_A SSRB; DNA binding prote 35.9 31 0.0011 21.3 3.0 23 111-134 13-35 (61)
144 3mzy_A RNA polymerase sigma-H 35.0 32 0.0011 25.1 3.5 27 110-138 123-149 (164)
145 3b73_A PHIH1 repressor-like pr 34.8 33 0.0011 25.1 3.4 37 108-146 24-62 (111)
146 2dk5_A DNA-directed RNA polyme 34.8 79 0.0027 22.1 5.3 48 109-158 34-83 (91)
147 2gqq_A Leucine-responsive regu 34.6 12 0.00041 28.7 1.0 38 107-146 23-60 (163)
148 2fxa_A Protease production reg 33.8 50 0.0017 26.2 4.7 46 110-157 61-106 (207)
149 1xmk_A Double-stranded RNA-spe 33.1 46 0.0016 22.9 3.7 40 103-144 17-57 (79)
150 2x48_A CAG38821; archeal virus 32.5 36 0.0012 20.7 2.9 22 111-133 31-52 (55)
151 1mkm_A ICLR transcriptional re 32.4 61 0.0021 26.4 5.1 47 98-146 9-56 (249)
152 1z6r_A MLC protein; transcript 32.4 75 0.0026 27.7 6.0 45 99-145 18-62 (406)
153 1x3u_A Transcriptional regulat 32.0 78 0.0027 20.4 4.8 27 110-138 30-56 (79)
154 2p5k_A Arginine repressor; DNA 32.0 91 0.0031 19.2 6.2 42 97-143 5-51 (64)
155 1or7_A Sigma-24, RNA polymeras 31.3 38 0.0013 25.7 3.5 27 110-138 155-181 (194)
156 1fse_A GERE; helix-turn-helix 30.7 87 0.003 19.7 4.8 23 111-134 26-48 (74)
157 1r8e_A Multidrug-efflux transp 30.5 2.2E+02 0.0074 23.1 9.1 100 110-221 4-115 (278)
158 2xvc_A ESCRT-III, SSO0910; cel 30.4 91 0.0031 20.4 4.5 36 107-144 21-56 (59)
159 3hrs_A Metalloregulator SCAR; 30.0 82 0.0028 25.2 5.4 52 101-157 10-61 (214)
160 1eij_A Hypothetical protein MT 29.7 21 0.00072 25.0 1.4 22 127-149 37-58 (80)
161 3r4k_A Transcriptional regulat 28.7 76 0.0026 26.1 5.1 56 98-157 7-63 (260)
162 4i0x_B ESAT-6-like protein MAB 28.6 1.5E+02 0.0051 20.6 7.3 59 164-222 11-76 (103)
163 2xrn_A HTH-type transcriptiona 27.7 82 0.0028 25.6 5.1 55 98-156 7-62 (241)
164 3k9t_A Putative peptidase; str 27.7 81 0.0028 28.8 5.3 46 96-145 389-434 (435)
165 2rnj_A Response regulator prot 27.7 43 0.0015 22.8 2.9 26 111-138 44-69 (91)
166 2fh0_A Hypothetical 16.0 kDa p 27.6 23 0.00078 24.9 1.3 22 127-149 35-56 (81)
167 2b0l_A GTP-sensing transcripti 27.5 1.6E+02 0.0054 20.7 6.0 41 104-146 35-76 (102)
168 1p4w_A RCSB; solution structur 27.5 55 0.0019 23.1 3.5 24 110-134 48-71 (99)
169 1ldj_A Cullin homolog 1, CUL-1 27.3 75 0.0026 30.8 5.4 43 100-144 592-634 (760)
170 3k2z_A LEXA repressor; winged 26.8 1.4E+02 0.0049 23.2 6.2 38 107-146 20-57 (196)
171 1v4r_A Transcriptional repress 26.5 95 0.0033 21.4 4.6 51 94-146 17-68 (102)
172 1xsv_A Hypothetical UPF0122 pr 25.9 60 0.0021 23.4 3.5 27 110-138 40-66 (113)
173 1bia_A BIRA bifunctional prote 25.7 92 0.0032 26.6 5.2 44 99-144 7-50 (321)
174 2o0y_A Transcriptional regulat 25.7 1.1E+02 0.0037 25.2 5.5 46 98-145 24-70 (260)
175 1fxk_A Prefoldin; archaeal pro 25.5 1.7E+02 0.0059 20.3 6.5 46 156-201 50-95 (107)
176 1rz4_A Eukaryotic translation 25.4 2.7E+02 0.0094 22.6 9.7 75 60-134 98-175 (226)
177 2oa4_A SIR5; structure, struct 25.0 57 0.002 23.6 3.1 44 98-145 38-81 (101)
178 1jko_C HIN recombinase, DNA-in 24.5 66 0.0023 18.5 3.0 21 112-133 22-42 (52)
179 1q06_A Transcriptional regulat 24.3 2.1E+02 0.0073 21.0 7.0 28 112-145 1-28 (135)
180 3lmm_A Uncharacterized protein 24.2 96 0.0033 29.1 5.4 53 99-157 432-489 (583)
181 1s7o_A Hypothetical UPF0122 pr 24.1 66 0.0023 23.2 3.4 26 111-138 38-63 (113)
182 3bqo_A Telomeric repeat-bindin 24.0 1.3E+02 0.0044 24.7 5.4 43 65-107 27-76 (211)
183 2h09_A Transcriptional regulat 23.9 1.2E+02 0.004 22.3 5.0 45 108-157 51-95 (155)
184 2zkz_A Transcriptional repress 23.6 99 0.0034 21.3 4.2 36 110-148 40-75 (99)
185 2vs0_A Virulence factor ESXA; 23.1 1.7E+02 0.0058 19.4 5.4 34 164-197 6-39 (97)
186 2g7u_A Transcriptional regulat 23.1 1.3E+02 0.0044 24.6 5.5 47 98-146 15-62 (257)
187 3dpl_C Cullin-5; ubiquitin, NE 22.8 71 0.0024 28.2 4.0 34 100-134 202-237 (382)
188 2ia2_A Putative transcriptiona 22.5 1.1E+02 0.0039 25.0 5.1 46 98-145 22-68 (265)
189 3gva_A Alkyltransferase-like p 22.2 69 0.0024 23.8 3.2 25 100-124 11-35 (116)
190 2hng_A Hypothetical protein; a 21.6 79 0.0027 23.9 3.4 44 142-185 68-111 (127)
191 2fu4_A Ferric uptake regulatio 21.5 1.8E+02 0.006 19.0 6.9 35 110-146 32-71 (83)
192 2zqm_A Prefoldin beta subunit 21.2 2.2E+02 0.0076 20.0 6.1 47 156-202 55-101 (117)
193 2o2a_A Hypothetical protein GB 21.1 83 0.0028 23.8 3.4 44 142-185 67-110 (128)
194 3cta_A Riboflavin kinase; stru 20.8 2.7E+02 0.0091 22.1 6.9 48 108-157 24-71 (230)
195 2kif_A O6-methylguanine-DNA me 20.8 68 0.0023 23.4 2.8 25 100-124 9-33 (108)
196 3dp7_A SAM-dependent methyltra 20.2 1.5E+02 0.0052 25.3 5.5 44 109-158 48-91 (363)
197 3hh0_A Transcriptional regulat 20.1 2E+02 0.007 21.5 5.7 46 110-170 3-49 (146)
No 1
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=100.00 E-value=8.3e-50 Score=328.55 Aligned_cols=167 Identities=74% Similarity=1.126 Sum_probs=157.9
Q ss_pred hhhhchhhhHHHHHHHhccCCCchHHHHHHHHHHhcCCCceechhhhcChhhhhccCCCchHHHHHHHHHhcCCHhhHHh
Q 044757 2 EIEQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKS 81 (227)
Q Consensus 2 ~~~~~~~~~~e~f~~l~~~~~~~~~~a~~li~~aL~~p~if~F~eLl~~p~v~~L~~~~~~~l~~LL~iF~~G~~~dy~~ 81 (227)
+++|++.++||||++|+|+++ +.+|+++|+.||.+|++|+|||||.+|+|++|++++++|+++||++|++||+.+|.+
T Consensus 2 ~~~~~~~~~l~~f~~la~~~~--~~~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~ 79 (169)
T 3chm_A 2 DIEQKQAEIIDQLVKRASTCK--SEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKC 79 (169)
T ss_dssp --CCCHHHHHHHHHHHHTTSC--GGGHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHH
Confidence 468999999999999999999 999999999999999999999999999999999989999999999999999999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEeecC
Q 044757 82 NAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAG 161 (227)
Q Consensus 82 ~~~~~~~l~~~~~~Klr~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~~ 161 (227)
+.+.+|.|++.+.+|||+|||++||..++++||++|+++|+|++.++||+|||++||+.|||+|||||++++|+|+|++|
T Consensus 80 ~~~~~p~L~~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~ 159 (169)
T 3chm_A 80 NATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAG 159 (169)
T ss_dssp HGGGSCCCCHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECC
T ss_pred hHHhCcchHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecC
Confidence 99999999999999999999999999999999999999999998899999999779999999999999999999999999
Q ss_pred CCCCcchHH
Q 044757 162 RDLRHGQLE 170 (227)
Q Consensus 162 R~~~~~q~~ 170 (227)
|+|+++||.
T Consensus 160 R~l~~~qi~ 168 (169)
T 3chm_A 160 RDLRPGQLG 168 (169)
T ss_dssp TTCCC----
T ss_pred CccCHHhcc
Confidence 999999996
No 2
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-35 Score=269.15 Aligned_cols=168 Identities=16% Similarity=0.343 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhcCCCceechhhhcChhhhhccC-CCchHHHHHHHHHhcCCHhhHHhh----hhcCCCcchH---HHHHH
Q 044757 26 PALVKLIVEATSHPSLFAFSEILSVPNLLQLQG-TESSVYIDLLRLFAHGTWTDYKSN----AAHLPQLVPD---QAVKL 97 (227)
Q Consensus 26 ~~a~~li~~aL~~p~if~F~eLl~~p~v~~L~~-~~~~~l~~LL~iF~~G~~~dy~~~----~~~~~~l~~~---~~~Kl 97 (227)
..|+.+++.||.+|++|+||+|+.+|.+++|++ +++.|+++||.+|++||+.+|.++ .+.+|.+... ..+|+
T Consensus 212 ~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~ki 291 (393)
T 4b4t_O 212 QLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQKI 291 (393)
T ss_dssp HHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHHHH
Confidence 678999999999999999999999999999975 478999999999999999999874 3456666544 46899
Q ss_pred HHHHhhhhhc--cCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEeecCCCCCcchHHHHHHH
Q 044757 98 KQLSVLTLAE--MNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQS 175 (227)
Q Consensus 98 r~LtLlsLa~--~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~~R~~~~~q~~~l~~~ 175 (227)
|.++++.|+. +++.|||++|++.|+|+ .++||.||| +||+.|+|+|+|||++++|+|+|++||+|+++||..|.++
T Consensus 292 rll~l~~l~~~~~~~~i~f~~ia~~l~i~-~~evE~lli-~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~ 369 (393)
T 4b4t_O 292 CLMTLIETVFVKNIRMLSFEDISKATHLP-KDNVEHLVM-RAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDR 369 (393)
T ss_dssp HHHHHHHHHCSSSCCCEEHHHHHHHHTCC-HHHHHHHHH-HHHHHSCSSSCEETTTTEECC-------------------
T ss_pred HHHHHHHHhccCCCCcCcHHHHHHHhCcC-HHHHHHHHH-HHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHH
Confidence 9999999884 57899999999999998 899999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044757 176 LTNWLDTSDNILSVIQDKIK 195 (227)
Q Consensus 176 L~~W~~~~~~~l~~ie~~~~ 195 (227)
|..|+++|++++..|+++..
T Consensus 370 L~~W~~~v~~l~~~ve~~~~ 389 (393)
T 4b4t_O 370 LVEWNDQVEKLGKKMEARGQ 389 (393)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999987654
No 3
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.49 E-value=2e-13 Score=125.25 Aligned_cols=179 Identities=9% Similarity=0.093 Sum_probs=121.8
Q ss_pred chhhhHHHHHHHhccCCCch-----HHHHHHHHHHhcCCCceechhhhcChhhhhccCCCchHHHHHHHHHhcCCHhhHH
Q 044757 6 KQAPLIEQFVKQASTLNGPG-----PALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYK 80 (227)
Q Consensus 6 ~~~~~~e~f~~l~~~~~~~~-----~~a~~li~~aL~~p~if~F~eLl~~p~v~~L~~~~~~~l~~LL~iF~~G~~~dy~ 80 (227)
++..|-..|+...++.++.+ ..+.-++..+|.+-+.+.++.++..|......+++..|+.+|+.+|..|++..|.
T Consensus 196 dyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~ 275 (394)
T 3txn_A 196 DFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQ 275 (394)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHH
Confidence 44556666776544333222 3456688888888889999999998876656555678999999999999999998
Q ss_pred hhhhcC-CCcc---------hHHHHHHHHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEeccc
Q 044757 81 SNAAHL-PQLV---------PDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQL 150 (227)
Q Consensus 81 ~~~~~~-~~l~---------~~~~~Klr~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~ 150 (227)
.....+ +.+. ....+++|...|+.+.++++.|+++.|++.++++ .++||.+|+ ++|..|.|.|+|||+
T Consensus 276 ~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls-~~evE~~L~-~lI~dg~I~a~IDq~ 353 (394)
T 3txn_A 276 AALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLP-MPQVEKKLS-QMILDKKFSGILDQG 353 (394)
T ss_dssp HHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSSCEEEETT
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeEEEcCC
Confidence 754322 2221 2345788899999999999999999999999998 999999999 999999999999999
Q ss_pred CcEEEEEeecCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 044757 151 RRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSV 189 (227)
Q Consensus 151 ~~~v~V~~~~~R~~~~~q~~~l~~~L~~W~~~~~~~l~~ 189 (227)
+|+|++....+|+ ...+...+.+..|...++.+...
T Consensus 354 ~giv~~~~~~~r~---~~y~~ale~l~~ls~vVd~L~~~ 389 (394)
T 3txn_A 354 EGVLIVFEETPVD---KTYERVLETIQSMGKVVDTLYQK 389 (394)
T ss_dssp TTEEEECCC------------------------------
T ss_pred CCEEEECCCcchh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998776665 33455667889999888877654
No 4
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.13 E-value=1.1e-10 Score=108.31 Aligned_cols=163 Identities=12% Similarity=0.124 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcCCCceechhhhcChhhhhccCCCchHHHHHHHHHhcCCHhhHHhhhhcC-------CCc-----c----
Q 044757 27 ALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHL-------PQL-----V---- 90 (227)
Q Consensus 27 ~a~~li~~aL~~p~if~F~eLl~~p~v~~L~~~~~~~l~~LL~iF~~G~~~dy~~~~~~~-------~~l-----~---- 90 (227)
+....+...+.+|..-.+..++..+.... ...+.+++..|+.+|..+++..|......+ |.. .
T Consensus 260 ~L~~~v~~~iLa~~~~~~~~ll~~~~~~~-~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 338 (445)
T 4b4t_P 260 VLSHIVYFLVLSPYGNLQNDLIHKIQNDN-NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHW 338 (445)
T ss_dssp HHHHHHHHHHHSSCSSTTHHHHHSHHHHS-SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHhhcc-cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHH
Confidence 45667778888887777788876543221 112356889999999999998887643221 111 0
Q ss_pred hHHHHHHHHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEeecCCCCCcchHH
Q 044757 91 PDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLE 170 (227)
Q Consensus 91 ~~~~~Klr~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~~R~~~~~q~~ 170 (227)
....+.++...|+.+++.++.|+|+.|++.|+++ .++||.++. ++|..|.|.|+|||++|+|++.+..+
T Consensus 339 ~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~-~~evE~~ls-~mI~~g~i~akIDq~~giV~F~~~~~--------- 407 (445)
T 4b4t_P 339 EDLQKRVIEHNLRVISEYYSRITLLRLNELLDLT-ESQTETYIS-DLVNQGIIYAKVNRPAKIVNFEKPKN--------- 407 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCCEEETTTTEEEC--------------
T ss_pred HHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcC-HHHHHHHHH-HHHHCCCEEEEEcCCCCEEEECCCCC---------
Confidence 2234566678888999999999999999999999 899999999 99999999999999999988764422
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 044757 171 NMMQSLTNWLDTSDNILSVIQDKIKWAETMCE 202 (227)
Q Consensus 171 ~l~~~L~~W~~~~~~~l~~ie~~~~~~~~~~~ 202 (227)
-.+.|..|..++++++..|+.-...++.+..
T Consensus 408 -~~~~l~~W~~~i~~l~~~v~k~~~lI~kE~m 438 (445)
T 4b4t_P 408 -SSQLLNEWSHNVDELLEHIETIGHLITKEEI 438 (445)
T ss_dssp --------------------------------
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2357999999999999999876666655544
No 5
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.96 E-value=5.7e-09 Score=96.03 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=107.2
Q ss_pred hhHHHHHHHhccCCCch-----HHHHHHHHHHhcCCCceec-hhhhcChhhhhc-cCCC-chHHHHHHHHHhcCCHhhHH
Q 044757 9 PLIEQFVKQASTLNGPG-----PALVKLIVEATSHPSLFAF-SEILSVPNLLQL-QGTE-SSVYIDLLRLFAHGTWTDYK 80 (227)
Q Consensus 9 ~~~e~f~~l~~~~~~~~-----~~a~~li~~aL~~p~if~F-~eLl~~p~v~~L-~~~~-~~~l~~LL~iF~~G~~~dy~ 80 (227)
.+-..|+....+....+ ..+.-.+..++.+++--++ ..++..|.+... ...+ ..++.+++..|..+.+..|.
T Consensus 226 ~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~ 305 (429)
T 4b4t_R 226 EAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYF 305 (429)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHH
Confidence 34455666554444322 3455566666666654443 346666666553 3322 35677889999999988875
Q ss_pred hh-h---h-cC---CCc---chHHHHHHHHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecc
Q 044757 81 SN-A---A-HL---PQL---VPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQ 149 (227)
Q Consensus 81 ~~-~---~-~~---~~l---~~~~~~Klr~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ 149 (227)
.. . . .+ +-+ .....+.+|...++.++++++.|+++.+|+.+|++ .+++|.++. +.|..|-|.|+|||
T Consensus 306 ~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s-~~~~E~~L~-~lI~~g~l~akID~ 383 (429)
T 4b4t_R 306 PYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVS-VAFLDNDLG-KFIPNKQLNCVIDR 383 (429)
T ss_dssp HHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCEEEET
T ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHH-HHHHcCCeEEEEcC
Confidence 42 1 1 11 112 24557899999999999999999999999999999 999999999 99999999999999
Q ss_pred cCcEEEEEeecCCC
Q 044757 150 LRRCFEVQFAAGRD 163 (227)
Q Consensus 150 ~~~~v~V~~~~~R~ 163 (227)
++|+|++.+..+|.
T Consensus 384 ~~giv~~~~~d~~~ 397 (429)
T 4b4t_R 384 VNGIVETNRPDNKN 397 (429)
T ss_dssp TTTEEEECC-----
T ss_pred CCCEEEECCCCchh
Confidence 99999998877764
No 6
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=98.80 E-value=3.9e-09 Score=88.43 Aligned_cols=97 Identities=21% Similarity=0.267 Sum_probs=77.8
Q ss_pred HHHHHHHHHhcCCHhhHHhhhhcCCC-cc----hHHHHHHHHHHhhhhhc------cCccccHHHHHHHhCCC-----Ch
Q 044757 63 VYIDLLRLFAHGTWTDYKSNAAHLPQ-LV----PDQAVKLKQLSVLTLAE------MNKVLSYDQLLKELEVA-----NV 126 (227)
Q Consensus 63 ~l~~LL~iF~~G~~~dy~~~~~~~~~-l~----~~~~~Klr~LtLlsLa~------~~~~isy~~I~~~L~i~-----~~ 126 (227)
.+.+|..++..||+..|++.-..... |. --.+.|+|.+.+..+.. ++..||+++|+.+++++ +.
T Consensus 82 ~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~ 161 (203)
T 3t5x_A 82 QFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDI 161 (203)
T ss_dssp GGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCH
Confidence 57889999999999999985433222 11 12357888877777764 68899999999999752 48
Q ss_pred hHHHHHHHHHhHhcCceEEEecccCcEEEEEeec
Q 044757 127 RELEDFLINECMYVGIVKGKLNQLRRCFEVQFAA 160 (227)
Q Consensus 127 ~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~ 160 (227)
+|||.+|. ++|+.|+|+|+||+.++++.++...
T Consensus 162 ~evE~ila-~lI~~G~Ikg~I~~~~~~lVlsk~~ 194 (203)
T 3t5x_A 162 DEVQCILA-NLIYMGHVKGYISHQHQKLVVSKQN 194 (203)
T ss_dssp HHHHHHHH-HHHHHTSSCEEEETTTTEEEECSSC
T ss_pred HHHHHHHH-HHHHcCceEEEEcccccEEEECCCC
Confidence 89999999 9999999999999999999988654
No 7
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.56 E-value=1.2e-07 Score=83.66 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=79.8
Q ss_pred chHHHHHHHHHhcCCHhhHHhhhhcCC----C--c----chHHHHHHHHHHhhhhhccCccccHHHHHHHhCCCChhHHH
Q 044757 61 SSVYIDLLRLFAHGTWTDYKSNAAHLP----Q--L----VPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELE 130 (227)
Q Consensus 61 ~~~l~~LL~iF~~G~~~dy~~~~~~~~----~--l----~~~~~~Klr~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE 130 (227)
..++..++..|..+++..|......+. . + .....+.++...+..++.+++.|+++.|++.++++ .+++|
T Consensus 296 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~-~~~~E 374 (434)
T 4b4t_Q 296 IDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLD-TQQVE 374 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCC-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcC-HHHHH
Confidence 467888999999999999987532211 1 1 12334677778888999999999999999999998 89999
Q ss_pred HHHHHHhHhcCceEEEecccCcEEEEEeecCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 044757 131 DFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQ 191 (227)
Q Consensus 131 ~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~~R~~~~~q~~~l~~~L~~W~~~~~~~l~~ie 191 (227)
.++. ++|..|.|.|+|||.+++|.+.....++ .....|.+.++++...|+
T Consensus 375 ~~l~-~lI~~~~i~a~id~~~g~v~~~~~~~~~----------~~~~~~l~~~~~l~~~vd 424 (434)
T 4b4t_Q 375 GKLS-QMILDKIFYGVLDQGNGWLYVYETPNQD----------ATYDSALELVGQLNKVVD 424 (434)
T ss_dssp HHHH-HHHHHTSSCCEEETTTTEEECC----------------------------------
T ss_pred HHHH-HHHhCCCcceecccccCeEeeCCCcchh----------HHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999987654443 234455555555555444
No 8
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=98.51 E-value=3e-07 Score=66.69 Aligned_cols=64 Identities=13% Similarity=0.255 Sum_probs=55.1
Q ss_pred HHHHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEeecC
Q 044757 96 KLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAG 161 (227)
Q Consensus 96 Klr~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~~ 161 (227)
++.-..|..+++.+..|+++.+++.++++ .++||.++. ++|..|-+.|+|||++++|.+....+
T Consensus 15 ~v~E~nl~~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls-~mI~~~~l~akIDq~~g~V~f~~~e~ 78 (84)
T 1ufm_A 15 AVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIAS-QMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp HHHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHH-HHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred HHHHHHHHHHHHhcCeeeHHHHHHHHCcC-HHHHHHHHH-HHHhCCcEEEEEeCCCCEEEeCCccc
Confidence 33344555678899999999999999999 999999999 99999999999999999998765433
No 9
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=6e-07 Score=84.71 Aligned_cols=94 Identities=17% Similarity=0.275 Sum_probs=70.8
Q ss_pred hHHHHHHHHHhcCCHhhHHhhhhcCCC-c----chHHHHHHHH----HHhhhhhccCccccHHHHHHHhCCCChhHHHHH
Q 044757 62 SVYIDLLRLFAHGTWTDYKSNAAHLPQ-L----VPDQAVKLKQ----LSVLTLAEMNKVLSYDQLLKELEVANVRELEDF 132 (227)
Q Consensus 62 ~~l~~LL~iF~~G~~~dy~~~~~~~~~-l----~~~~~~Klr~----LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~l 132 (227)
.++++|..+|..||+..|.+....+.. | +-..+.++|. -.|..+...+..||+.+|+..|++++.+++|.+
T Consensus 343 ~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~i 422 (523)
T 4b4t_S 343 LPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYM 422 (523)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHH
Confidence 468899999999999999984322111 1 1112233333 234455567899999999999999867889999
Q ss_pred HHHHhHhcCceEEEecccCcEEEE
Q 044757 133 LINECMYVGIVKGKLNQLRRCFEV 156 (227)
Q Consensus 133 vI~~ai~~gLI~gkIDQ~~~~v~V 156 (227)
|- ++|..|.|+|+||+.+|.|..
T Consensus 423 VA-kmI~dG~I~A~Idh~~g~v~s 445 (523)
T 4b4t_S 423 VS-RAIRDGVIEAKINHEDGFIET 445 (523)
T ss_dssp HH-HHHHHTSSCCEECTTTCCEEC
T ss_pred HH-HHHHcCCceEEEecCCCEEEe
Confidence 99 999999999999999997754
No 10
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=97.95 E-value=9.2e-06 Score=75.63 Aligned_cols=95 Identities=14% Similarity=0.155 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCHhhHHhhhhcCCC-c----c-hHHHHHHHHHHhhhhhc----------cCccccHHHHHHHhCC----
Q 044757 64 YIDLLRLFAHGTWTDYKSNAAHLPQ-L----V-PDQAVKLKQLSVLTLAE----------MNKVLSYDQLLKELEV---- 123 (227)
Q Consensus 64 l~~LL~iF~~G~~~dy~~~~~~~~~-l----~-~~~~~Klr~LtLlsLa~----------~~~~isy~~I~~~L~i---- 123 (227)
+..|..++..||+..|++.-..... | . --.+.|+|.+.+-.|.. ....||+++|+.++++
T Consensus 299 y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~ 378 (455)
T 3t5v_B 299 WSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGP 378 (455)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCc
Confidence 6789999999999999985332211 1 1 23346677664443322 2368999999999984
Q ss_pred ----------------CChhHHHHHHHHHhHhcCceEEEecccCcEEEEEee
Q 044757 124 ----------------ANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFA 159 (227)
Q Consensus 124 ----------------~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~ 159 (227)
.+.+|||-+|. .+|+.|+|+|+||+.++++.++..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~devEcIlA-~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 379 TFEDPGAQEITIYNGIHSPKNVENVLV-TLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp CTTSTTCCCCCTTTSSCCSSCHHHHHH-HHHHHTSCCEEEETTTTEEEECCC
T ss_pred cccccccccccccccCCCHHHHHHHHH-HHHHcCCeEEEEecCCCEEEECCC
Confidence 13789999999 999999999999999999999865
No 11
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=95.58 E-value=0.035 Score=46.67 Aligned_cols=74 Identities=12% Similarity=0.039 Sum_probs=61.1
Q ss_pred hHHHHHHHHHhcCCHhhHHhhhhcCCCc-----chHHHHHHHHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHH
Q 044757 62 SVYIDLLRLFAHGTWTDYKSNAAHLPQL-----VPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINE 136 (227)
Q Consensus 62 ~~l~~LL~iF~~G~~~dy~~~~~~~~~l-----~~~~~~Klr~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ 136 (227)
...+++-..+..|++..|-......|.. .+-...++|.-.+-+++..+..||.+++++.|+++|.++++.++- +
T Consensus 136 ~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~-~ 214 (229)
T 4b0z_A 136 EWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAE-E 214 (229)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHH-H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHH-H
Confidence 3567889999999999998876666642 234467889888888888899999999999999998899999887 6
No 12
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=94.40 E-value=0.068 Score=37.17 Aligned_cols=55 Identities=9% Similarity=0.226 Sum_probs=47.7
Q ss_pred HhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEE
Q 044757 101 SVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQ 157 (227)
Q Consensus 101 tLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~ 157 (227)
.++...+.++.++.+++|.++++. ..++-+-+- +....|.+.|-||...+-++|+
T Consensus 11 ~Fi~yIk~~Kvv~LedLA~~F~l~-t~~~i~RI~-~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 11 EFINYIKKSKVVLLEDLAFQMGLR-TQDAINRIQ-DLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHHCSEECHHHHHHHHCSC-HHHHHHHHH-HHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHHcCeeeHHHHHHHhCCC-hHHHHHHHH-HHHHCCCeEEEEeCCCCEEEec
Confidence 456677789999999999999999 677766777 7888999999999999999886
No 13
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=90.43 E-value=2.7 Score=30.22 Aligned_cols=70 Identities=13% Similarity=0.065 Sum_probs=50.0
Q ss_pred CccccHHHHHHHh-CCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEeecCCCCCcchHHHHHHHHHHHHHHH
Q 044757 109 NKVLSYDQLLKEL-EVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTS 183 (227)
Q Consensus 109 ~~~isy~~I~~~L-~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~~R~~~~~q~~~l~~~L~~W~~~~ 183 (227)
.+..+|.+|++.+ +++ ...|=..|= +....|+|+.+-|..++.......++. + .++......+..|....
T Consensus 25 ~~~~~~~eLa~~l~~is-~~tls~~L~-~Le~~GlI~r~~~~~d~r~~~y~LT~~--G-~~l~~~~~~l~~w~~~~ 95 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNIT-QKMLTQQLR-ELEADGVINRIVYNQVPPKVEYELSEY--G-RSLEGILDMLXAWGANH 95 (107)
T ss_dssp TCCBCHHHHHHHCTTSC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEECTT--G-GGGHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeEEEEECcc--H-HHHHHHHHHHHHHHHHh
Confidence 4679999999999 998 777777766 788899999999877665544455443 2 22334556777777653
No 14
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=89.25 E-value=1.2 Score=33.27 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=57.6
Q ss_pred hhhhccCcc-ccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEeccc--CcEEEEEeecCCCCCcch-HHHHHHHHHH
Q 044757 103 LTLAEMNKV-LSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQL--RRCFEVQFAAGRDLRHGQ-LENMMQSLTN 178 (227)
Q Consensus 103 lsLa~~~~~-isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~--~~~v~V~~~~~R~~~~~q-~~~l~~~L~~ 178 (227)
..|....+. ++-.+|++.++++ ...|-..|= .....|+|...-+.. .+..++....+ +.+ .+.+...+..
T Consensus 33 ~~L~~~~~~~~t~~eLa~~l~~s-~sTV~r~L~-~L~~~GlV~r~~~~~d~~~~~~~y~~~~----~~~~~~~i~~~~~~ 106 (123)
T 3r0a_A 33 KSFLNEPDRWIDTDALSKSLKLD-VSTVQRSVK-KLHEKEILQRSQQNLDGGGYVYIYKIYS----KNQIRNIIQKIVQS 106 (123)
T ss_dssp HHHHHSTTCCEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEECTTSCEEEEEEECC----HHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeeCCccCCCcceEEEecCC----HHHHHHHHHHHHHH
Confidence 344444455 9999999999998 888888777 788899999765543 23333333322 233 4668889999
Q ss_pred HHHHHHHHHHHH
Q 044757 179 WLDTSDNILSVI 190 (227)
Q Consensus 179 W~~~~~~~l~~i 190 (227)
|.+.+...++.+
T Consensus 107 ~~~~~~~~l~~~ 118 (123)
T 3r0a_A 107 WADRLGQELKEW 118 (123)
T ss_dssp HHHHHHHTTTTT
T ss_pred HHHHHHHHHHHH
Confidence 999988776544
No 15
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=89.09 E-value=1.2 Score=30.78 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=37.5
Q ss_pred HHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEe
Q 044757 99 QLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKL 147 (227)
Q Consensus 99 ~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkI 147 (227)
.|.++.--.++..+|+.+||+.|+++ ...|...|= +....|+|.+.-
T Consensus 19 IL~~L~~~~~~~~~t~~eLA~~Lgvs-~~tV~~~L~-~L~~~G~I~~~g 65 (77)
T 1qgp_A 19 ILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLY-SLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHCSSSCEEHHHHHHHHCCC-HHHHHHHHH-HHHHHTSEEEEC
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEecC
Confidence 34444444345689999999999999 899999887 888999998864
No 16
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=88.57 E-value=1.6 Score=30.60 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=40.4
Q ss_pred HHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEE
Q 044757 98 KQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEV 156 (227)
Q Consensus 98 r~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V 156 (227)
+.|.++.-..++..+++.+||+.|+++ ...|...|- +.-..|+|.-. +...+.-.+
T Consensus 14 ~IL~~L~~~~pg~~~t~~eLA~~Lgvs-r~tV~~~L~-~Le~~G~I~~~-g~~~~~W~i 69 (81)
T 1qbj_A 14 RILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLY-SLAKKGKLQKE-AGTPPLWKI 69 (81)
T ss_dssp HHHHHHHHHCTTCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE-SSSSCEEEE
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEec-CCCCCeeEE
Confidence 344555433345689999999999999 899999988 88899999643 444444443
No 17
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=88.00 E-value=4.1 Score=29.65 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=38.3
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEE
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQ 157 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~ 157 (227)
+..++..+|++.++++ ...|-..|= .....|+|.-.-|..++....-
T Consensus 41 ~~~~~~~ela~~l~~s-~~tvs~~l~-~L~~~glv~~~~~~~d~R~~~~ 87 (138)
T 3bpv_A 41 EPGIKQDELATFFHVD-KGTIARTLR-RLEESGFIEREQDPENRRRYIL 87 (138)
T ss_dssp STTCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeecCCCCceeEEe
Confidence 4679999999999998 788887776 8889999999888766554433
No 18
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=87.79 E-value=4 Score=29.97 Aligned_cols=43 Identities=7% Similarity=0.035 Sum_probs=35.7
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcE
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRC 153 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~ 153 (227)
...++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 41 ~~~~t~~~la~~l~~s-~~~vs~~l~-~Le~~gli~r~~~~~d~R 83 (144)
T 1lj9_A 41 NPGIIQEKIAELIKVD-RTTAARAIK-RLEEQGFIYRQEDASNKK 83 (144)
T ss_dssp STTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred CcCcCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeecCCCCCc
Confidence 3579999999999998 788887766 888999999988775544
No 19
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=87.01 E-value=5.8 Score=27.46 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=48.4
Q ss_pred hhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCc---EEEEEeecCCCCCcchHHHHHHHHHHH
Q 044757 103 LTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRR---CFEVQFAAGRDLRHGQLENMMQSLTNW 179 (227)
Q Consensus 103 lsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~---~v~V~~~~~R~~~~~q~~~l~~~L~~W 179 (227)
+.+......++..+|++.++++ ...|-..+= .....|+|...-+...+ ........+ +-+..+...+..|
T Consensus 28 ~~l~~~~~~~t~~ela~~l~is-~~tv~~~l~-~L~~~g~v~~~~~~~~~~gr~~~~~~l~~-----~~~~~~~~~~~~~ 100 (109)
T 2d1h_A 28 LKMVEIEKPITSEELADIFKLS-KTTVENSLK-KLIELGLVVRTKTEGKKIGRPKYYYSISS-----NILEKIRNDLLNC 100 (109)
T ss_dssp HHHHHHCSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEC-------CCEEEEECT-----THHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEeeccccCCCCCCCeeeecCH-----HHHHHHHHHHHHH
Confidence 3344435679999999999998 788888777 78889999987654331 122222222 4456666777777
Q ss_pred HHHHH
Q 044757 180 LDTSD 184 (227)
Q Consensus 180 ~~~~~ 184 (227)
.+.+.
T Consensus 101 ~~~~~ 105 (109)
T 2d1h_A 101 AKRME 105 (109)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66554
No 20
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=86.82 E-value=5.6 Score=29.16 Aligned_cols=43 Identities=12% Similarity=0.021 Sum_probs=35.8
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcE
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRC 153 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~ 153 (227)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 48 ~~~~~~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~r 90 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVT-QSAITASVD-KLEEMGLVVRVRDREDRR 90 (146)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCCcCHHHHHHHhCCC-chhHHHHHH-HHHHCCCEEeecCCCCCc
Confidence 5679999999999998 788887776 888899999887765444
No 21
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=86.41 E-value=4.7 Score=27.72 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=32.1
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecc
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQ 149 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ 149 (227)
...+++.+|++.++++ ...|=..+= .....|+|...-+.
T Consensus 28 ~~~~~~~ela~~l~is-~~tvs~~l~-~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 28 RRKAPFSQIQKVLDLT-PGNLDSHIR-VLERNGLVKTYKVI 66 (100)
T ss_dssp HSEEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEEEC
T ss_pred cCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecC
Confidence 3579999999999998 788887766 77889999977643
No 22
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=86.30 E-value=0.9 Score=34.08 Aligned_cols=71 Identities=14% Similarity=0.243 Sum_probs=42.9
Q ss_pred cCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEE---ecccCcEEEEEeecCCCCCcchHHHHHHHHHHHH
Q 044757 108 MNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGK---LNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWL 180 (227)
Q Consensus 108 ~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gk---IDQ~~~~v~V~~~~~R~~~~~q~~~l~~~L~~W~ 180 (227)
.+..+|+.+|++.++++ ...|=..+= .....|+|.+. +|...--..++....-.+.+.......+.|..|-
T Consensus 15 ~~~~~~~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~l~~~~ 88 (141)
T 1i1g_A 15 KDARTPFTEIAKKLGIS-ETAVRKRVK-ALEEKGIIEGYTIKINPKKLGYSLVTITGVDTKPEKLFEVAEKLKEYD 88 (141)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCCCCCCCCSGGGTCCEEEEEEEEECGGGHHHHHHHHHHST
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEeccccccChHHhCccEEEEEEEEECchhHHHHHHHHhcCC
Confidence 34568999999999998 788877666 77889999765 3432211111110000112345666666776663
No 23
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=86.04 E-value=3.9 Score=29.74 Aligned_cols=80 Identities=11% Similarity=0.197 Sum_probs=49.4
Q ss_pred HHHHHHhhhhhccCccccHHHHHHHh-CCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEeecCCCCCcchHHHHHH
Q 044757 96 KLKQLSVLTLAEMNKVLSYDQLLKEL-EVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQ 174 (227)
Q Consensus 96 Klr~LtLlsLa~~~~~isy~~I~~~L-~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~~R~~~~~q~~~l~~ 174 (227)
|-|.+-|..|..+...++|.+|++.+ +|+ ...+=.-+= ..-..|||+-+.+ . .+.+. .++. + .++.....
T Consensus 27 ~wrl~IL~~L~~g~~~~~~~eL~~~l~gis-~~~ls~~L~-~Le~~GlV~r~~~--r-~~~y~-LT~~--G-~~l~~~l~ 97 (111)
T 3df8_A 27 KYTMLIISVLGNGSTRQNFNDIRSSIPGIS-STILSRRIK-DLIDSGLVERRSG--Q-ITTYA-LTEK--G-MNVRNSLM 97 (111)
T ss_dssp TTHHHHHHHHTSSSSCBCHHHHHHTSTTCC-HHHHHHHHH-HHHHTTSEEEEES--S-SEEEE-ECHH--H-HHHHHHHH
T ss_pred ccHHHHHHHHhcCCCCCCHHHHHHHccCCC-HHHHHHHHH-HHHHCCCEEEeec--C-cEEEE-ECcc--H-HHHHHHHH
Confidence 44444444455444446699999999 898 677766666 7788999999888 2 22221 1111 0 12344566
Q ss_pred HHHHHHHHHH
Q 044757 175 SLTNWLDTSD 184 (227)
Q Consensus 175 ~L~~W~~~~~ 184 (227)
.+..|.....
T Consensus 98 ~l~~w~~~~~ 107 (111)
T 3df8_A 98 PLLQYISVLD 107 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777877543
No 24
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=85.09 E-value=8.7 Score=27.65 Aligned_cols=69 Identities=20% Similarity=0.126 Sum_probs=47.0
Q ss_pred ccccHHHHHHHh-CCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEeecCCCCCcchHHHHHHHHHHHHHHH
Q 044757 110 KVLSYDQLLKEL-EVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTS 183 (227)
Q Consensus 110 ~~isy~~I~~~L-~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~~R~~~~~q~~~l~~~L~~W~~~~ 183 (227)
..+++.+|++.+ +++ ...|=..|= .....|+|...-|..++.......++.- .++-.....+..|....
T Consensus 34 ~~~~~~eLa~~l~~is-~~tvs~~L~-~Le~~GlI~r~~~~~d~r~~~~~LT~~G---~~~~~~~~~l~~w~~~~ 103 (112)
T 1z7u_A 34 GTKRNGELMRALDGIT-QRVLTDRLR-EMEKDGLVHRESFNELPPRVEYTLTPEG---YALYDALSSLCHWGETF 103 (112)
T ss_dssp SCBCHHHHHHHSTTCC-HHHHHHHHH-HHHHHTSEEEEEECCSSCEEEEEECHHH---HHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeEEEEECHhH---HHHHHHHHHHHHHHHHH
Confidence 568999999999 998 788887777 8889999999988765554444443321 12222334556666543
No 25
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=84.84 E-value=6.9 Score=28.59 Aligned_cols=46 Identities=15% Similarity=0.055 Sum_probs=37.3
Q ss_pred cCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEE
Q 044757 108 MNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFE 155 (227)
Q Consensus 108 ~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~ 155 (227)
....++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 49 ~~~~~t~~~la~~l~~s-~~~vs~~l~-~L~~~glv~r~~~~~d~R~~ 94 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVE-GPTLARLLD-GLESQGLVRRLAVAEDRRAK 94 (146)
T ss_dssp CSSCCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCBTTBCSC
T ss_pred cCCCCCHHHHHHHhCCC-hhhHHHHHH-HHHHCCCeeecCCCcccCee
Confidence 45679999999999998 788887766 88899999988876555443
No 26
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=84.56 E-value=6.1 Score=27.27 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=33.9
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecc
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQ 149 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ 149 (227)
...++..+|++.++++ ...|=..+= .....|+|...-+.
T Consensus 32 ~~~~s~~ela~~l~is-~~tv~~~l~-~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 32 RGGMRVSEIARELDLS-ARFVRDRLK-VLLKRGFVRREIVE 70 (109)
T ss_dssp HCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEEeec
Confidence 3569999999999998 788888877 88999999988776
No 27
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=84.39 E-value=4.8 Score=30.62 Aligned_cols=57 Identities=14% Similarity=0.027 Sum_probs=42.6
Q ss_pred hhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEeecC
Q 044757 103 LTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAG 161 (227)
Q Consensus 103 lsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~~ 161 (227)
..|...+..++-.+|++.++++ ...|=..|= +....|+|.=.-|..++....-..++
T Consensus 38 ~~L~~~~~~~~~~eLa~~l~~~-~~tvs~~v~-~Le~~GlV~R~~~~~DrR~~~l~LT~ 94 (151)
T 4aik_A 38 YNINRLPPEQSQIQLAKAIGIE-QPSLVRTLD-QLEEKGLITRHTSANDRRAKRIKLTE 94 (151)
T ss_dssp HHHHHSCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCTTCEEEEECG
T ss_pred HHHHHcCCCCcHHHHHHHHCcC-HHHHHHHHH-HHHhCCCeEeecCCCCCcchhhhcCH
Confidence 3444444566778999999998 778877766 88899999999998877655554443
No 28
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=84.21 E-value=4.8 Score=30.06 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=31.1
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEE
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFE 155 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~ 155 (227)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 53 ~~~~~~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~D~R~~ 97 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLS-SNTLTPMLK-RLEQSGWVKRERQQSDKRQL 97 (149)
T ss_dssp SSSEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEC---------C
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeCCCCCCccee
Confidence 4678999999999998 788887776 88899999988776555433
No 29
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.13 E-value=3.5 Score=35.29 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=67.6
Q ss_pred Cceech-hhhcChhh-hhccCCCc-hHHHHHHHHHhcCCHhhHHhhhhc--CCC-----cchHHHHHHHHHHhhhhhccC
Q 044757 40 SLFAFS-EILSVPNL-LQLQGTES-SVYIDLLRLFAHGTWTDYKSNAAH--LPQ-----LVPDQAVKLKQLSVLTLAEMN 109 (227)
Q Consensus 40 ~if~F~-eLl~~p~v-~~L~~~~~-~~l~~LL~iF~~G~~~dy~~~~~~--~~~-----l~~~~~~Klr~LtLlsLa~~~ 109 (227)
++-.|. +|-.+|.. ..++++++ ...+++-..+..|++..|-+.... .|. +.+-.+.++|.-.+-++++.+
T Consensus 118 ~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~kaY 197 (274)
T 4b4t_T 118 NTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSY 197 (274)
T ss_dssp CSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 44445532 23444432 346788899999999988764332 333 234557899998888999999
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHH
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLI 134 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI 134 (227)
+.+|.+++++.|+.+|.+++..++-
T Consensus 198 ~~i~l~~~~~~L~F~s~~e~~~F~~ 222 (274)
T 4b4t_T 198 DFLPLSNIKALLFFNNEKETEKFAL 222 (274)
T ss_dssp SSCCHHHHHHHHTCCSHHHHHHHHH
T ss_pred hhcCHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999998899998876
No 30
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=83.86 E-value=11 Score=28.50 Aligned_cols=80 Identities=14% Similarity=0.117 Sum_probs=52.6
Q ss_pred HHHHhhhhhccCccccHHHHHHHh-CCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEeecCCCCCcchHHHHHHHH
Q 044757 98 KQLSVLTLAEMNKVLSYDQLLKEL-EVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSL 176 (227)
Q Consensus 98 r~LtLlsLa~~~~~isy~~I~~~L-~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~~R~~~~~q~~~l~~~L 176 (227)
+.+-|..|. .+..+|.+|++.+ +|+ ...+=..+= +.-..|||.=+.+.....-.....++.- .++......|
T Consensus 28 ~l~IL~~L~--~g~~rf~eL~~~l~gIs-~~~Ls~~L~-~Le~~GLV~R~~~~~d~r~v~y~LT~~G---~~l~~~l~~l 100 (131)
T 4a5n_A 28 KGILFYHMI--DGKKRFNEFRRICPSIT-QRMLTLQLR-ELEADGIVHREVYHQVPPKVEYSLTEFG---RTLEPIVLQM 100 (131)
T ss_dssp HHHHHHHHT--TSCBCHHHHHHHCTTSC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEECTTG---GGGHHHHHHH
T ss_pred HHHHHHHHh--cCCcCHHHHHHHhcccC-HHHHHHHHH-HHHHCCCEEEEecCCCCCeEEEEECHhH---HHHHHHHHHH
Confidence 333444444 5689999999999 998 677776666 7788999998887765443333333321 1234456678
Q ss_pred HHHHHHHH
Q 044757 177 TNWLDTSD 184 (227)
Q Consensus 177 ~~W~~~~~ 184 (227)
..|..+-.
T Consensus 101 ~~W~~~~~ 108 (131)
T 4a5n_A 101 KEWGESNR 108 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876543
No 31
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=82.85 E-value=7.5 Score=29.18 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=51.1
Q ss_pred HHHHHHhhhhhccCccccHHHHHHHh-CCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEeecCCCCCcchHHHHHH
Q 044757 96 KLKQLSVLTLAEMNKVLSYDQLLKEL-EVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQ 174 (227)
Q Consensus 96 Klr~LtLlsLa~~~~~isy~~I~~~L-~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~~R~~~~~q~~~l~~ 174 (227)
+.+.+-|..|. .+..+|.+|++.+ +|+ ...|=..|= .....|+|.-+.|...+.......++.- .+......
T Consensus 35 ~w~l~IL~~L~--~g~~~~~eLa~~l~gis-~~tls~~L~-~Le~~GlV~r~~~~~d~r~~~y~LT~~G---~~l~~~l~ 107 (131)
T 1yyv_A 35 RWGVLILVALR--DGTHRFSDLRRXMGGVS-EXMLAQSLQ-ALEQDGFLNRVSYPVVPPHVEYSLTPLG---EQVSDXVA 107 (131)
T ss_dssp HHHHHHHHHGG--GCCEEHHHHHHHSTTCC-HHHHHHHHH-HHHHHTCEEEEEECSSSCEEEEEECHHH---HHHHHHHH
T ss_pred CcHHHHHHHHH--cCCCCHHHHHHHhccCC-HHHHHHHHH-HHHHCCcEEEEecCCCCCeEEEEECccH---HHHHHHHH
Confidence 34433344444 4679999999999 698 777777766 7888999999988766544444443321 12223344
Q ss_pred HHHHHHHH
Q 044757 175 SLTNWLDT 182 (227)
Q Consensus 175 ~L~~W~~~ 182 (227)
.+..|...
T Consensus 108 ~l~~w~~~ 115 (131)
T 1yyv_A 108 ALADWIEL 115 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55666554
No 32
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=82.78 E-value=4.9 Score=30.30 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=37.1
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEee
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFA 159 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~ 159 (227)
...++..+|++.++++ ...|=..|= +....|+|.-+-|..++....-..
T Consensus 62 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l~L 110 (159)
T 3s2w_A 62 EDGINQESLSDYLKID-KGTTARAIQ-KLVDEGYVFRQRDEKDRRSYRVFL 110 (159)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC---CCEEEEE
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEecCCCCCCeeEEEE
Confidence 3668999999999998 788887776 888999999988876665444333
No 33
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=82.67 E-value=6.5 Score=28.09 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=46.2
Q ss_pred CccccHHHHHHHhC-CCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEeecCCCCCcchHHHHHHHHHHHHH
Q 044757 109 NKVLSYDQLLKELE-VANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLD 181 (227)
Q Consensus 109 ~~~isy~~I~~~L~-i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~~R~~~~~q~~~l~~~L~~W~~ 181 (227)
.+..+|.+|++.++ ++ ...|=..|= .....|+|..+-|..++.......++.- .+.......+..|..
T Consensus 36 ~~~~~~~eL~~~l~gis-~~~ls~~L~-~Le~~GlV~r~~~~~d~r~~~y~LT~~G---~~l~~~l~~l~~w~~ 104 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGIS-EKMLIDELK-FLCGKGLIKKKQYPEVPPRVEYSLTPLG---EKVLPIIDEIAKFGM 104 (107)
T ss_dssp TSCEEHHHHHHHSTTCC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEECHHH---HTTHHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeeEEEECccH---HHHHHHHHHHHHHHH
Confidence 46799999999995 98 777877766 7888999999988765544444443321 112233446677764
No 34
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=82.49 E-value=6 Score=29.92 Aligned_cols=49 Identities=10% Similarity=0.027 Sum_probs=39.4
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEee
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFA 159 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~ 159 (227)
...++..+|++.++++ ...|=..|= .....|+|.-.-|..++....-..
T Consensus 58 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l~L 106 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIK-PQSANKILQ-DLLANGWIEKAPDPTHGRRILVTV 106 (162)
T ss_dssp CTTCCHHHHHHHHTSC-GGGHHHHHH-HHHHTTSEEEEECCSSSCCEEEEE
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCcCeEecCCCCcCCeeEeEE
Confidence 3579999999999998 788887766 888999999999887665554443
No 35
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=82.14 E-value=5.3 Score=27.49 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=35.5
Q ss_pred hhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecc
Q 044757 102 VLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQ 149 (227)
Q Consensus 102 LlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ 149 (227)
++.+...+..++..+|++.++++ ...|-..+= .....|+|...-|.
T Consensus 29 il~~l~~~~~~s~~ela~~l~is-~~tvs~~l~-~L~~~glv~~~~~~ 74 (99)
T 3cuo_A 29 ILCMLSGSPGTSAGELTRITGLS-ASATSQHLA-RMRDEGLIDSQRDA 74 (99)
T ss_dssp HHHHHTTCCSEEHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEEEECS
T ss_pred HHHHHHhCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecC
Confidence 33333345679999999999998 788887777 78889999877553
No 36
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=81.96 E-value=2.4 Score=32.21 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=36.3
Q ss_pred hhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEE---eccc
Q 044757 102 VLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGK---LNQL 150 (227)
Q Consensus 102 LlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gk---IDQ~ 150 (227)
|+.+...+..+|+.+|++.+|++ ...|-..+= +....|+|.+. +|..
T Consensus 14 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 14 LVKILSENSRLTYRELADILNTT-RQRIARRID-KLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHTTSC-HHHHHHHHH-HHHHHTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEEecCChH
Confidence 44444455779999999999998 788888777 88889999853 5654
No 37
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=81.64 E-value=11 Score=27.70 Aligned_cols=41 Identities=5% Similarity=0.021 Sum_probs=34.2
Q ss_pred cccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcE
Q 044757 111 VLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRC 153 (227)
Q Consensus 111 ~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~ 153 (227)
.++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 45 ~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R 85 (145)
T 3g3z_A 45 SRTQKHIGEKWSLP-KQTVSGVCK-TLAGQGLIEWQEGEQDRR 85 (145)
T ss_dssp SBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEECCCSSCGG
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeccCCCCCc
Confidence 49999999999998 788887777 888999999877765543
No 38
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=81.59 E-value=3.3 Score=32.53 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=41.8
Q ss_pred HHHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEE
Q 044757 97 LKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQ 157 (227)
Q Consensus 97 lr~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~ 157 (227)
+|.|..+....+.+.+|-++||+.+++| ..-|+..+- ..-..|+|..+ -..++-+...
T Consensus 30 lr~L~~LA~~~~~~~~s~~eIA~~~~i~-~~~l~kil~-~L~~aGlv~s~-rG~~GGy~La 87 (159)
T 3lwf_A 30 LTITLELAKRIGDGPISLRSIAQDKNLS-EHYLEQLIG-PLRNAGIVKSI-RGAHGGYVLN 87 (159)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE-CSTTCEEEEC
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCeEEEe-cCCCCceEec
Confidence 3433333333345679999999999999 899999888 88899999876 3445555544
No 39
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=81.51 E-value=4.9 Score=29.16 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=35.8
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEE
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFE 155 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~ 155 (227)
+..++..+|++.++++ ...|-..|= .....|+|.-.-|..++...
T Consensus 45 ~~~~~~~ela~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~r~~ 89 (139)
T 3bja_A 45 SGKVSMSKLIENMGCV-PSNMTTMIQ-RMKRDGYVMTEKNPNDQRET 89 (139)
T ss_dssp SCSEEHHHHHHHCSSC-CTTHHHHHH-HHHHTTSEEEEECSSCTTCE
T ss_pred cCCcCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCeeeccCCCCCcee
Confidence 4579999999999998 678877766 78889999988776554433
No 40
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=81.50 E-value=2.1 Score=32.38 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=36.4
Q ss_pred hhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEE---eccc
Q 044757 102 VLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGK---LNQL 150 (227)
Q Consensus 102 LlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gk---IDQ~ 150 (227)
|+.+...+..+|+.+|++.++++ ...|-..+= +....|+|.+. +|..
T Consensus 10 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 10 IIEELKKDSRLSMRELGRKIKLS-PPSVTERVR-QLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHHHHCSCCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEecccChh
Confidence 34433445679999999999998 888888877 88889999854 6654
No 41
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=81.49 E-value=2.6 Score=32.29 Aligned_cols=47 Identities=11% Similarity=0.185 Sum_probs=37.4
Q ss_pred cCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEE
Q 044757 108 MNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQ 157 (227)
Q Consensus 108 ~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~ 157 (227)
+.+.+|-++||+.+++| ..-|+..+- ..-..|+|... -..++-+.+.
T Consensus 25 ~~~~~s~~~IA~~~~i~-~~~l~kil~-~L~~aGlv~s~-rG~~GGy~La 71 (143)
T 3t8r_A 25 GQGCISLKSIAEENNLS-DLYLEQLVG-PLRNAGLIRSV-RGAKGGYQLR 71 (143)
T ss_dssp TSCCEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEC-SSSSSEEEES
T ss_pred CCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCEEEec-CCCCCCeeec
Confidence 34679999999999999 899999888 88899999864 4445555543
No 42
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=81.29 E-value=2.3 Score=32.86 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=36.1
Q ss_pred hhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE---Eeccc
Q 044757 102 VLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG---KLNQL 150 (227)
Q Consensus 102 LlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g---kIDQ~ 150 (227)
|+.+...+..+|+.+|++.++++ ...|-..+- +....|+|.+ .+|..
T Consensus 15 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 15 ILQVLQENGRLTNVELSERVALS-PSPCLRRLK-QLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEeeecccCChH
Confidence 33333445569999999999998 888888877 8889999985 45543
No 43
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=81.21 E-value=8.9 Score=27.46 Aligned_cols=63 Identities=6% Similarity=-0.015 Sum_probs=45.3
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEeecCCCCCcchHHHHHHHHHHHHHH
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDT 182 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~~R~~~~~q~~~l~~~L~~W~~~ 182 (227)
+.+++.+|++.++++ ...|-..+= .....|+|..+-+.. .++. + ++++.+..+...|..|...
T Consensus 37 ~~~s~~eLa~~lgis-~stvs~~L~-~L~~~GlV~~~~~gr--~~~y-~-----l~~~~~~~l~~~l~~~~~~ 99 (108)
T 2kko_A 37 GERAVEAIATATGMN-LTTASANLQ-ALKSGGLVEARREGT--RQYY-R-----IAGEDVARLFALVQVVADE 99 (108)
T ss_dssp CCEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEEEEETT--EEEE-E-----ESCHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCC--EEEE-E-----EChHHHHHHHHHHHHHhhH
Confidence 678999999999998 788887776 778899999875432 2221 1 2234577777788777643
No 44
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=81.21 E-value=2.7 Score=32.04 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=37.0
Q ss_pred hhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE---Eeccc
Q 044757 102 VLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG---KLNQL 150 (227)
Q Consensus 102 LlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g---kIDQ~ 150 (227)
|+.+...+..+|+.+|++.+|++ ...|-..+= +....|+|.+ .+|..
T Consensus 13 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 13 ILEALMGNARTAYAELAKQFGVS-PETIHVRVE-KMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSEEEEEEEECTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHcCCcceEEEecCHH
Confidence 44444445679999999999998 788888777 8888999986 56764
No 45
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=80.70 E-value=7.8 Score=29.66 Aligned_cols=50 Identities=16% Similarity=-0.019 Sum_probs=33.8
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEeec
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAA 160 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~ 160 (227)
+..++..+|++.++++ ...|=..|= +....|+|.-.-|..++....-..+
T Consensus 66 ~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~~l~LT 115 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIE-QPSLVRTLD-QLEDKGLISRQTCASDRRAKRIKLT 115 (166)
T ss_dssp CSSEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEC--------CEEEEC
T ss_pred CCCCCHHHHHHHHCCC-HhhHHHHHH-HHHHCCCEEeeCCCCCCCeeEEEEC
Confidence 4569999999999998 788887766 8889999998887766655444433
No 46
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=80.35 E-value=2.8 Score=32.96 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=33.9
Q ss_pred ccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE---Eeccc
Q 044757 107 EMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG---KLNQL 150 (227)
Q Consensus 107 ~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g---kIDQ~ 150 (227)
..+..+|+.+|++.++++ ...|-..+- +....|+|.+ .+|..
T Consensus 27 ~~~~~~s~~eLA~~lglS-~~tv~~~l~-~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 27 KKDARLTISELSEQLKKP-ESTIHFRIK-KLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEEECTT
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeecccCCHH
Confidence 345679999999999998 788888877 8889999975 45553
No 47
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=80.16 E-value=4.6 Score=29.89 Aligned_cols=43 Identities=5% Similarity=-0.100 Sum_probs=30.5
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcE
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRC 153 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~ 153 (227)
...++..+|++.++++ ...|=..|= +....|+|.-.-|..++.
T Consensus 52 ~~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R 94 (148)
T 3nrv_A 52 ASDCSVQKISDILGLD-KAAVSRTVK-KLEEKKYIEVNGHSEDKR 94 (148)
T ss_dssp SSSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC--------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeecCCCCcc
Confidence 4489999999999998 788887776 888899999887765543
No 48
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=80.09 E-value=7.3 Score=28.72 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=34.9
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEE
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEV 156 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V 156 (227)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++....
T Consensus 55 ~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~d~R~~~ 99 (150)
T 2rdp_A 55 GDLTVGELSNKMYLA-CSTTTDLVD-RMERNGLVARVRDEHDRRVVR 99 (150)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECCC---CEE
T ss_pred CCCCHHHHHHHHCCC-chhHHHHHH-HHHHCCCeeecCCCCCcceeE
Confidence 469999999999998 788887766 888899999888775554433
No 49
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=79.86 E-value=5.8 Score=29.51 Aligned_cols=45 Identities=11% Similarity=0.067 Sum_probs=30.9
Q ss_pred cCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEE--ecccCcEE
Q 044757 108 MNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGK--LNQLRRCF 154 (227)
Q Consensus 108 ~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gk--IDQ~~~~v 154 (227)
....++..+|++.++++ ...|=..|= .....|+|.-. -|..++..
T Consensus 48 ~~~~~t~~eLa~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~~~D~R~ 94 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVN-KAAVSRRVK-KLLNAELVKLEKPDSNTDQRL 94 (151)
T ss_dssp HHSCBCHHHHHHHHCSC-SSHHHHHHH-HHHHTTSEEC-----------
T ss_pred HcCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCCCCCe
Confidence 45679999999999998 678877776 88899999973 36555543
No 50
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=79.54 E-value=3 Score=28.94 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=35.7
Q ss_pred HHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceE
Q 044757 100 LSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVK 144 (227)
Q Consensus 100 LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~ 144 (227)
..|+.+....+.++.++|++.++++ ...|..-+- .....|+|.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS-~~TIRrdL~-~Le~~G~l~ 47 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTP-QPMINAMLQ-QLESMGKAV 47 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCC-HHHHHHHHH-HHHHHTSEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEE
Confidence 3456666778999999999999999 888888887 888888774
No 51
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=79.42 E-value=9.9 Score=28.34 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=35.1
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEE
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCF 154 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v 154 (227)
..++..+|++.++++ ...|=..|= +....|+|.-.-|..++..
T Consensus 57 ~~~t~~ela~~l~is-~~tvs~~l~-~Le~~Gli~r~~~~~d~R~ 99 (154)
T 2eth_A 57 GPKKMKEIAEFLSTT-KSNVTNVVD-SLEKRGLVVREMDPVDRRT 99 (154)
T ss_dssp CCBCHHHHHHHTTSC-HHHHHHHHH-HHHHTTSEEEEECTTTSSC
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCcce
Confidence 469999999999998 788887766 8888999998877655443
No 52
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=79.34 E-value=3.9 Score=30.24 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=32.2
Q ss_pred cCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEE
Q 044757 108 MNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGK 146 (227)
Q Consensus 108 ~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gk 146 (227)
+++.++-.+|++.+++| ...|...+- ..-..|+|...
T Consensus 23 ~~~~~s~~ela~~~~i~-~~~v~~il~-~L~~~Glv~~~ 59 (129)
T 2y75_A 23 GEGPTSLKSIAQTNNLS-EHYLEQLVS-PLRNAGLVKSI 59 (129)
T ss_dssp TSCCBCHHHHHHHTTSC-HHHHHHHHH-HHHHTTSEEEC
T ss_pred CCCcCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEec
Confidence 35789999999999999 899999888 88889998754
No 53
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=79.03 E-value=7.4 Score=26.31 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=31.3
Q ss_pred cCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEE
Q 044757 108 MNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGK 146 (227)
Q Consensus 108 ~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gk 146 (227)
..+.++..+|++.++++ ...|-..+- .....|+|...
T Consensus 11 ~~~~~s~~eLa~~lgvs-~~tv~r~L~-~L~~~GlI~~~ 47 (81)
T 2htj_A 11 RHNGGKTAEIAEALAVT-DYQARYYLL-LLEKAGMVQRS 47 (81)
T ss_dssp HSCCCCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSEEEE
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe
Confidence 34679999999999998 888888877 78889999854
No 54
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=78.88 E-value=8.7 Score=28.45 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=35.5
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcE
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRC 153 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~ 153 (227)
...++..+|++.++++ ...|-..|= .....|+|.-.-|..++.
T Consensus 49 ~~~~t~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~R 91 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVK-PSAVTLMAD-RLEQKNLIARTHNTKDRR 91 (155)
T ss_dssp HSEEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeecCCCCCCc
Confidence 3569999999999998 788888776 888999999887765443
No 55
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=78.45 E-value=15 Score=25.87 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=31.6
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEec
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLN 148 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkID 148 (227)
+.++..+|++.++++ ...|-..+= .....|+|...-+
T Consensus 33 ~~~~~~ela~~l~is-~~tv~~~l~-~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVS-RQAIAKHLN-ALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeEEec
Confidence 458999999999998 788888777 7888999987655
No 56
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=78.21 E-value=8.7 Score=29.62 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=37.4
Q ss_pred HhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE---Eeccc
Q 044757 101 SVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG---KLNQL 150 (227)
Q Consensus 101 tLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g---kIDQ~ 150 (227)
.|+.+...+..+||.+||+.+|++ ...|-.-+= +....|+|++ .+|..
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s-~~tv~~rl~-~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLS-TTPCWRRIQ-KMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeeceeeeCHH
Confidence 345555566788999999999998 788877777 7888999884 56654
No 57
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=77.81 E-value=9.8 Score=27.64 Aligned_cols=47 Identities=9% Similarity=-0.009 Sum_probs=36.8
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEe
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQF 158 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~ 158 (227)
..++..+|++.++++ ...|=..|= +....|+|.-.-|..++....-.
T Consensus 46 ~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Gli~r~~~~~D~R~~~~~ 92 (139)
T 3eco_A 46 DGLTQNDIAKALQRT-GPTVSNLLR-NLERKKLIYRYVDAQDTRRKNIG 92 (139)
T ss_dssp TCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECCC--CCEEEE
T ss_pred CCcCHHHHHHHhCCC-cccHHHHHH-HHHHCCCEeecCCCCCCCeeeeE
Confidence 589999999999998 788887776 88899999988887665544433
No 58
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=77.64 E-value=2.1 Score=33.75 Aligned_cols=46 Identities=9% Similarity=0.170 Sum_probs=35.3
Q ss_pred hhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE---Eecc
Q 044757 102 VLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG---KLNQ 149 (227)
Q Consensus 102 LlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g---kIDQ 149 (227)
|+.+...+..+||.+|++.++++ ...|-..+= +....|+|++ .+|.
T Consensus 32 IL~~L~~~~~~s~~eLA~~lglS-~~tv~~rl~-~L~~~G~I~~~~a~vd~ 80 (171)
T 2e1c_A 32 IIKILQNDGKAPLREISKITGLA-ESTIHERIR-KLRESGVIKKFTAIIDP 80 (171)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSSCCCCCCCCG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEeeeEEECH
Confidence 33333445679999999999998 788887777 8888999976 3555
No 59
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=77.63 E-value=2.9 Score=28.97 Aligned_cols=35 Identities=9% Similarity=0.197 Sum_probs=30.0
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG 145 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g 145 (227)
+...|..+|++.++++ ...|..-|- ..-..|+|.=
T Consensus 22 g~~psv~EIa~~lgvS-~~TVrr~L~-~Le~kG~I~R 56 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLS-IYQVRLYLE-QLHDVGVLEK 56 (77)
T ss_dssp TSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEE
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCcEEe
Confidence 4789999999999997 788988888 7888888853
No 60
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=77.30 E-value=12 Score=28.07 Aligned_cols=43 Identities=16% Similarity=0.020 Sum_probs=34.1
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcE
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRC 153 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~ 153 (227)
...++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 64 ~~~~t~~ela~~l~is-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 106 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVE-QSTLSRALD-GLQADGLVRREVDSDDQR 106 (162)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEC--CCS
T ss_pred CCCCCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEecCCCCCCC
Confidence 4579999999999998 788887766 888999999887664443
No 61
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=76.90 E-value=14 Score=27.20 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=35.4
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcE
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRC 153 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~ 153 (227)
...++..+|++.++++ ...|-..|= .....|+|.-.-|..++.
T Consensus 52 ~~~~t~~ela~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~d~R 94 (152)
T 3bj6_A 52 TPGATAPQLGAALQMK-RQYISRILQ-EVQRAGLIERRTNPEHAR 94 (152)
T ss_dssp STTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCSSSTT
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCeeecCCccccc
Confidence 3479999999999998 788888776 888999999887765443
No 62
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=76.50 E-value=4.3 Score=29.92 Aligned_cols=43 Identities=5% Similarity=0.018 Sum_probs=33.4
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEE
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCF 154 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v 154 (227)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 50 ~~~t~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~D~R~ 92 (143)
T 3oop_A 50 EPISQKEIALWTKKD-TPTVNRIVD-VLLRKELIVREISTEDRRI 92 (143)
T ss_dssp SSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC----CCS
T ss_pred CCcCHHHHHHHHCCC-HhhHHHHHH-HHHHCCCeeccCCCccCce
Confidence 679999999999998 788887776 8889999998887655543
No 63
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=76.28 E-value=2.9 Score=31.66 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=37.3
Q ss_pred HhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE---Eeccc
Q 044757 101 SVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG---KLNQL 150 (227)
Q Consensus 101 tLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g---kIDQ~ 150 (227)
.|+.+...+..+|+.+|++.++++ ...|-..+= .....|+|.+ .+|..
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRIP-KATLSYRIK-KLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEEEeecCHH
Confidence 344444455679999999999998 788887777 8888999987 56653
No 64
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=76.04 E-value=13 Score=28.27 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=35.2
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCc
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRR 152 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~ 152 (227)
.+..+|.+|++.++|+ ...|=..|= .....|+|+.+-++.+.
T Consensus 35 ~g~~~~~eLa~~lgis-~~tls~~L~-~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLA-KNILAARLR-NLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEEEecCCCC
Confidence 3578999999999998 677776666 77889999999987765
No 65
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=75.71 E-value=2.5 Score=32.22 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=33.3
Q ss_pred hhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE
Q 044757 102 VLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG 145 (227)
Q Consensus 102 LlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g 145 (227)
|+.+...+..+|+.+|++.++++ ...|-..+= +....|+|.+
T Consensus 12 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~ 53 (151)
T 2cyy_A 12 IIKILQNDGKAPLREISKITGLA-ESTIHERIR-KLRESGVIKK 53 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHHCSC-HHHHHHHHH-HHHHHTSSCC
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEE
Confidence 44443445679999999999998 788887777 7888999975
No 66
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=75.67 E-value=14 Score=26.67 Aligned_cols=42 Identities=17% Similarity=0.041 Sum_probs=35.1
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcE
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRC 153 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~ 153 (227)
..++..+|++.++++ ...|-..|= +....|+|.-.-|..++.
T Consensus 44 ~~~~~~ela~~l~is-~~~vs~~l~-~L~~~gli~~~~~~~d~r 85 (142)
T 3bdd_A 44 APLHQLALQERLQID-RAAVTRHLK-LLEESGYIIRKRNPDNQR 85 (142)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSSTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCCCCCCC
Confidence 469999999999998 788888777 888999999888765443
No 67
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=75.59 E-value=8.1 Score=28.08 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=32.3
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecc
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQ 149 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ 149 (227)
.+..+..+|++.++++ ...|=.-+= .....|+|..+-+.
T Consensus 29 ~~~~~~~eLa~~l~is-~~tvs~hL~-~L~~~GlV~~~~~g 67 (118)
T 3f6o_A 29 RGPATVSELAKPFDMA-LPSFMKHIH-FLEDSGWIRTHKQG 67 (118)
T ss_dssp TCCEEHHHHHTTCCSC-HHHHHHHHH-HHHHTTSEEEEEET
T ss_pred hCCCCHHHHHHHhCcC-HHHHHHHHH-HHHHCCCeEEEecC
Confidence 3668999999999998 778877666 67789999988774
No 68
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=75.26 E-value=11 Score=26.20 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=32.5
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEeccc
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQL 150 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~ 150 (227)
+..++.+|++.++++ ...|-.-+= .....|+|..+-+..
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~-~L~~~Glv~~~~~g~ 73 (98)
T 3jth_A 35 QELSVGELCAKLQLS-QSALSQHLA-WLRRDGLVTTRKEAQ 73 (98)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCTT
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCC
Confidence 789999999999998 788877766 777899999875543
No 69
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=75.07 E-value=5.1 Score=30.65 Aligned_cols=38 Identities=8% Similarity=0.037 Sum_probs=32.9
Q ss_pred cCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEe
Q 044757 108 MNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKL 147 (227)
Q Consensus 108 ~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkI 147 (227)
+++.++-.+||+.+++| ..-|+..+- ..-..|+|...=
T Consensus 27 ~~~~~~~~~iA~~~~i~-~~~l~kil~-~L~~~Glv~s~r 64 (149)
T 1ylf_A 27 PSSLCTSDYMAESVNTN-PVVIRKIMS-YLKQAGFVYVNR 64 (149)
T ss_dssp CGGGCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEC-
T ss_pred CCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEcc
Confidence 45689999999999999 899999988 889999998643
No 70
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=75.02 E-value=9.3 Score=29.08 Aligned_cols=74 Identities=16% Similarity=0.086 Sum_probs=51.7
Q ss_pred HHHHHHhhhhhcc-CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE--EecccCcEEEEEeecCCCCCcchHHHH
Q 044757 96 KLKQLSVLTLAEM-NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG--KLNQLRRCFEVQFAAGRDLRHGQLENM 172 (227)
Q Consensus 96 Klr~LtLlsLa~~-~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g--kIDQ~~~~v~V~~~~~R~~~~~q~~~l 172 (227)
-+-.+-|..+... ..-.|.++||+.++++ ..+|...+= ..+..|+|.= +.|..++....-+.. -+
T Consensus 35 ~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s-~~~v~~~L~-~L~~KGlI~i~~~~d~~g~~~~~ydL~----------pL 102 (135)
T 2v79_A 35 LILLLKIKMHLEKGSYFPTPNQLQEGMSIS-VEECTNRLR-MFIQKGFLFIEECEDQNGIKFEKYSLQ----------PL 102 (135)
T ss_dssp HHHHHHHHHHHTTTCCSCCHHHHHTTSSSC-HHHHHHHHH-HHHHHTSCEEEEEECTTCCEEEEEECH----------HH
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEeEecCCCceEEEeeHH----------HH
Confidence 3344555555443 3568999999999999 899999988 9999999986 556655544444333 36
Q ss_pred HHHHHHHHH
Q 044757 173 MQSLTNWLD 181 (227)
Q Consensus 173 ~~~L~~W~~ 181 (227)
.++|..+..
T Consensus 103 ~ekL~~~~~ 111 (135)
T 2v79_A 103 WGKLYEYIQ 111 (135)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666553
No 71
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=74.99 E-value=9.7 Score=27.96 Aligned_cols=50 Identities=10% Similarity=-0.075 Sum_probs=35.3
Q ss_pred cCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEee
Q 044757 108 MNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFA 159 (227)
Q Consensus 108 ~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~ 159 (227)
.+..++..+|++.++++ ...|=..|= +....|+|.-.-|..++....-..
T Consensus 47 ~~~~~t~~eLa~~l~~~-~~tvs~~l~-~L~~~Glv~r~~~~~D~R~~~~~L 96 (140)
T 3hsr_A 47 NDEKLNIKKLGERVFLD-SGTLTPLLK-KLEKKDYVVRTREEKDERNLQISL 96 (140)
T ss_dssp TTCEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC-------CEEEE
T ss_pred HcCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCeEecCCCCCcceeeeeE
Confidence 35689999999999998 788888777 888999999888776665444333
No 72
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=74.65 E-value=3.3 Score=29.47 Aligned_cols=44 Identities=16% Similarity=0.140 Sum_probs=36.8
Q ss_pred HhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEE
Q 044757 101 SVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGK 146 (227)
Q Consensus 101 tLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gk 146 (227)
.|+.+....+.++.++|++.++++ ...|...+- .....|+|.=.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS-~~TIRrDL~-~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTP-QPLIDAMLE-RMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCC-HHHHHHHHH-HHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 455666678999999999999999 888998888 88888987654
No 73
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=74.32 E-value=19 Score=25.89 Aligned_cols=48 Identities=13% Similarity=-0.059 Sum_probs=38.3
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEee
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFA 159 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~ 159 (227)
..++..+|++.++++ ...|-..|= +....|+|.-.-|..++....-..
T Consensus 49 ~~~t~~ela~~l~~s-~~~vs~~l~-~Le~~glv~r~~~~~d~R~~~~~l 96 (142)
T 2fbi_A 49 GEMESYQLANQACIL-RPSMTGVLA-RLERDGIVRRWKAPKDQRRVYVNL 96 (142)
T ss_dssp CSEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEEEE
T ss_pred CCCCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeecCCCCCCeeEEEE
Confidence 459999999999998 788888777 888999999988876655444333
No 74
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=71.59 E-value=16 Score=26.28 Aligned_cols=45 Identities=7% Similarity=-0.031 Sum_probs=37.2
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEE
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEV 156 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V 156 (227)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..++....
T Consensus 51 ~~~t~~ela~~l~~~-~~tvs~~l~-~L~~~glv~r~~~~~d~R~~~ 95 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMD-AATIKGVVE-RLDKRGLIQRSADPDDGRRLL 95 (140)
T ss_dssp SSBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTCEEEEEETTEEEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCCCeee
Confidence 479999999999998 788888777 888999999888776655443
No 75
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=71.00 E-value=9 Score=28.59 Aligned_cols=46 Identities=17% Similarity=0.098 Sum_probs=31.4
Q ss_pred cCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEE
Q 044757 108 MNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFE 155 (227)
Q Consensus 108 ~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~ 155 (227)
....++..+|++.++++ ...|=..|= +....|+|.-.-|..++...
T Consensus 59 ~~~~~~~~ela~~l~i~-~~tvs~~l~-~Le~~Gli~r~~~~~d~R~~ 104 (160)
T 3boq_A 59 NPDGLSMGKLSGALKVT-NGNVSGLVN-RLIKDGMVVKAMSADDRRSF 104 (160)
T ss_dssp CTTCEEHHHHHHHCSSC-CSCHHHHHH-HHHHHTSEEEC--------C
T ss_pred cCCCCCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEEeecCCCCCCeE
Confidence 45579999999999998 677777666 78889999987766554433
No 76
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=70.51 E-value=9.9 Score=28.43 Aligned_cols=43 Identities=7% Similarity=0.001 Sum_probs=30.6
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcE
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRC 153 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~ 153 (227)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 61 ~~~~t~~ela~~l~is-~~tvs~~l~-~Le~~glv~r~~~~~d~R 103 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMD-KVAVSRAVA-RLLERGFIRRETHGDDRR 103 (162)
T ss_dssp STTCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC--------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeecCCCCCC
Confidence 4679999999999998 788887776 888999999877655443
No 77
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=70.22 E-value=6.8 Score=27.59 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=35.1
Q ss_pred HHHHHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE
Q 044757 95 VKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG 145 (227)
Q Consensus 95 ~Klr~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g 145 (227)
.+.+.|.++. . +. +|+.+||+.|+|+ ...|-..|- +.-..|+|.-
T Consensus 18 ~~~~IL~lL~--~-~g-~sa~eLAk~LgiS-k~aVr~~L~-~Le~eG~I~~ 62 (82)
T 1oyi_A 18 IVCEAIKTIG--I-EG-ATAAQLTRQLNME-KREVNKALY-DLQRSAMVYS 62 (82)
T ss_dssp HHHHHHHHHS--S-ST-EEHHHHHHHSSSC-HHHHHHHHH-HHHHHTSSEE
T ss_pred HHHHHHHHHH--H-cC-CCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEe
Confidence 3445565555 3 33 9999999999999 888988888 7778999875
No 78
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=70.21 E-value=17 Score=26.24 Aligned_cols=42 Identities=10% Similarity=-0.013 Sum_probs=35.0
Q ss_pred cccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEE
Q 044757 111 VLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCF 154 (227)
Q Consensus 111 ~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v 154 (227)
.++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 50 ~~~~~ela~~l~~~-~~tvs~~l~-~Le~~Gli~r~~~~~d~R~ 91 (141)
T 3bro_A 50 EVLQRDLESEFSIK-SSTATVLLQ-RMEIKKLLYRKVSGKDSRQ 91 (141)
T ss_dssp CCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTTS
T ss_pred CcCHHHHHHHHCCC-cchHHHHHH-HHHHCCCEEeeCCCcCCCe
Confidence 79999999999998 788887776 8889999998877655433
No 79
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=69.97 E-value=27 Score=26.63 Aligned_cols=105 Identities=8% Similarity=0.122 Sum_probs=58.8
Q ss_pred cccHHHHHHHhCCCChhHHHHHHHHHhHhcCceE-EEecccCcEEEEE----------eecCCCCCcchHHHHHHHHHHH
Q 044757 111 VLSYDQLLKELEVANVRELEDFLINECMYVGIVK-GKLNQLRRCFEVQ----------FAAGRDLRHGQLENMMQSLTNW 179 (227)
Q Consensus 111 ~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~-gkIDQ~~~~v~V~----------~~~~R~~~~~q~~~l~~~L~~W 179 (227)
.++..++|+.+||+ ...+-.| - + .||+. ..-+..+...+=. ....-.|+.+++..+ |..|
T Consensus 16 ~~~I~evA~~~gvs-~~tLR~Y-e-~---~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~---l~~~ 86 (148)
T 3gpv_A 16 YYTIGQVAKMQHLT-ISQIRYY-D-K---QGLFPFLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKIKQF---IDWS 86 (148)
T ss_dssp CBCHHHHHHHTTCC-HHHHHHH-H-H---TTCCTTCEECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHHHHHH---HHHH
T ss_pred ceeHHHHHHHHCcC-HHHHHHH-H-H---CCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHH---HHhh
Confidence 58899999999999 8888877 2 2 68885 5555433322211 001112233333322 2222
Q ss_pred H---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Q 044757 180 L---DTSDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSVHS 224 (227)
Q Consensus 180 ~---~~~~~~l~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (227)
. ..+......++++...+.++.++..+....++..++..+..+.+
T Consensus 87 ~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 87 MEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 23555666777777777777777777777777776666555543
No 80
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=69.43 E-value=12 Score=32.74 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=43.4
Q ss_pred CCHhhHHhhhhc--CCCcc----hHHHHHHHHHHhhhhhccC----ccccHHHHHHHhCCCChhHHHHHHH
Q 044757 74 GTWTDYKSNAAH--LPQLV----PDQAVKLKQLSVLTLAEMN----KVLSYDQLLKELEVANVRELEDFLI 134 (227)
Q Consensus 74 G~~~dy~~~~~~--~~~l~----~~~~~Klr~LtLlsLa~~~----~~isy~~I~~~L~i~~~~eVE~lvI 134 (227)
|++..|-..... .|-+. +-....+|..+|-+++..+ ..+|.+.+++.|+.++.+++++|+-
T Consensus 177 gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~ 247 (316)
T 3t5v_A 177 NFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCN 247 (316)
T ss_dssp CCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred chHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 566666554433 33332 3335788988888777644 5899999999999988888888865
No 81
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=69.40 E-value=41 Score=26.76 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=30.7
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEE
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGK 146 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gk 146 (227)
..+++.+|++.++++ ...|-.-+= .....|+|.+.
T Consensus 32 ~~~s~~eLA~~lglS-~stv~~~l~-~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKT-PQTIYHHIE-KLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 569999999999998 788877776 78889999987
No 82
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=69.02 E-value=7.5 Score=29.34 Aligned_cols=44 Identities=9% Similarity=-0.020 Sum_probs=33.9
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEE
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFE 155 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~ 155 (227)
..++..+|++.++++ ...|=..|= +....|+|.-.-|..++...
T Consensus 66 ~~~t~~eLa~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~DrR~~ 109 (161)
T 3e6m_A 66 GELTVGQLATLGVME-QSTTSRTVD-QLVDEGLAARSISDADQRKR 109 (161)
T ss_dssp SEEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEECC---CCCSC
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCcccCCee
Confidence 479999999999998 778887766 88899999988776555433
No 83
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=68.72 E-value=9 Score=29.93 Aligned_cols=47 Identities=11% Similarity=0.156 Sum_probs=36.5
Q ss_pred cCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEE
Q 044757 108 MNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQ 157 (227)
Q Consensus 108 ~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~ 157 (227)
+++.+|-++||+.++|| ..-|+..+- ..-..|+|+.. -..++-....
T Consensus 25 ~~~~~s~~~IA~~~~is-~~~l~kil~-~L~~aGlv~s~-rG~~GGy~La 71 (162)
T 3k69_A 25 RDSKVASRELAQSLHLN-PVMIRNILS-VLHKHGYLTGT-VGKNGGYQLD 71 (162)
T ss_dssp TTSCBCHHHHHHHHTSC-GGGTHHHHH-HHHHTTSSEEE-CSTTCEEECC
T ss_pred CCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEee-cCCCCCeEec
Confidence 35679999999999999 899999888 88899999754 3344444443
No 84
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=68.51 E-value=19 Score=25.97 Aligned_cols=46 Identities=20% Similarity=0.102 Sum_probs=37.2
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEE
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEV 156 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V 156 (227)
+..++..+|++.++++ ...|=..|= +....|+|.-.-|..++....
T Consensus 46 ~~~~~~~~la~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~R~~~ 91 (138)
T 1jgs_A 46 AACITPVELKKVLSVD-LGALTRMLD-RLVCKGWVERLPNPNDKRGVL 91 (138)
T ss_dssp HSSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECTTCSSCEE
T ss_pred cCCCCHHHHHHHHCCC-hHHHHHHHH-HHHHCCCEEecCCcccCceeE
Confidence 3468999999999998 788887766 888999999988876655443
No 85
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=68.42 E-value=8.5 Score=29.21 Aligned_cols=44 Identities=7% Similarity=0.052 Sum_probs=34.4
Q ss_pred hhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEec
Q 044757 102 VLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLN 148 (227)
Q Consensus 102 LlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkID 148 (227)
|+.|+..... +-++||+.++|| ..-|+.++- ..-..|+|...=.
T Consensus 15 L~~La~~~~~-s~~~IA~~~~i~-~~~l~kIl~-~L~~aGlv~s~rG 58 (145)
T 1xd7_A 15 LSLISMDEKT-SSEIIADSVNTN-PVVVRRMIS-LLKKADILTSRAG 58 (145)
T ss_dssp HHHHHTCSCC-CHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEECCSS
T ss_pred HHHHHhCCCC-CHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEeecC
Confidence 3344432224 999999999999 899999988 8999999986543
No 86
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=68.23 E-value=12 Score=25.91 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=33.5
Q ss_pred HHHHhhhhh-ccCccccHHHHHHHhCCCChhH-HHHHHHHHhHhcCceE
Q 044757 98 KQLSVLTLA-EMNKVLSYDQLLKELEVANVRE-LEDFLINECMYVGIVK 144 (227)
Q Consensus 98 r~LtLlsLa-~~~~~isy~~I~~~L~i~~~~e-VE~lvI~~ai~~gLI~ 144 (227)
|.+.++.+. ..+..++..+|++.++++ ... |=..|= .....|+|.
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l~is-~~t~vs~~l~-~Le~~Glv~ 62 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKASGVS-EKTFFMGLKD-RLIRAGLVK 62 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHCCC-HHHHHTTHHH-HHHHTTSEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCC-chHHHHHHHH-HHHHCCCee
Confidence 444444433 333379999999999998 777 777666 788899999
No 87
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=68.19 E-value=11 Score=27.70 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=30.8
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEec
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLN 148 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkID 148 (227)
.+..++.+|++.++++ ...|-..+= .....|+|...=+
T Consensus 54 ~~~~s~~eLa~~l~is-~stvs~~L~-~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 54 DEELCVCDIANILGVT-IANASHHLR-TLYKQGVVNFRKE 91 (122)
T ss_dssp SSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEC--
T ss_pred CCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEE
Confidence 4679999999999998 788887766 6778999987543
No 88
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=68.08 E-value=15 Score=26.76 Aligned_cols=46 Identities=11% Similarity=0.108 Sum_probs=30.9
Q ss_pred ccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEee
Q 044757 112 LSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFA 159 (227)
Q Consensus 112 isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~ 159 (227)
++..+|++.++++ ...|=..|= .....|+|.-.-|..++....-..
T Consensus 52 ~t~~eLa~~l~~s-~~tvs~~l~-~L~~~Glv~r~~~~~d~R~~~~~l 97 (146)
T 3tgn_A 52 LTNSELARRLNVS-QAAVTKAIK-SLVKEGMLETSKDSKDARVIFYQL 97 (146)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC----------CCEE
T ss_pred CCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCeEeccCCCCCceeEEEE
Confidence 9999999999998 788887777 888999999988776665444333
No 89
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=68.05 E-value=19 Score=25.03 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=31.9
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEeccc
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQL 150 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~ 150 (227)
+..++.+|++.++++ ...|-.-+= .....|+|..+-+..
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~-~L~~~Glv~~~~~g~ 73 (102)
T 3pqk_A 35 GEFSVGELEQQIGIG-QPTLSQQLG-VLRESGIVETRRNIK 73 (102)
T ss_dssp CCBCHHHHHHHHTCC-TTHHHHHHH-HHHHTTSEEEECSSS
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCC
Confidence 569999999999998 677776666 677899999876554
No 90
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=67.50 E-value=8.3 Score=28.30 Aligned_cols=45 Identities=11% Similarity=-0.013 Sum_probs=27.8
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEE
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFE 155 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~ 155 (227)
...++..+|++.++++ ...|=..|= +....|+|.-.-|..++...
T Consensus 49 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~L~~~Glv~r~~~~~DrR~~ 93 (142)
T 3ech_A 49 QRGLNLQDLGRQMCRD-KALITRKIR-ELEGRNLVRRERNPSDQRSF 93 (142)
T ss_dssp TTTCCHHHHHHHHC----CHHHHHHH-HHHHTTSEEC----------
T ss_pred CCCcCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEeeccCCCCCCee
Confidence 3479999999999998 678887776 88899999988887665443
No 91
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=67.40 E-value=10 Score=24.96 Aligned_cols=44 Identities=25% Similarity=0.239 Sum_probs=32.9
Q ss_pred HHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE
Q 044757 98 KQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG 145 (227)
Q Consensus 98 r~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g 145 (227)
+.|.++. ...+.++..+||+.|+++ ...|...+= ..-..|+|..
T Consensus 14 ~IL~~L~--~~~~~~s~~eLA~~lgls-r~tv~~~l~-~L~~~G~I~~ 57 (67)
T 2heo_A 14 KILQVLS--DDGGPVAIFQLVKKCQVP-KKTLNQVLY-RLKKEDRVSS 57 (67)
T ss_dssp HHHHHHH--HHCSCEEHHHHHHHHCSC-HHHHHHHHH-HHHHTTSEEE
T ss_pred HHHHHHH--HcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEec
Confidence 3344442 344679999999999999 889998766 6677788754
No 92
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=66.64 E-value=28 Score=23.86 Aligned_cols=45 Identities=16% Similarity=0.100 Sum_probs=34.9
Q ss_pred CccccHHHH----HHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEE
Q 044757 109 NKVLSYDQL----LKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFE 155 (227)
Q Consensus 109 ~~~isy~~I----~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~ 155 (227)
...++..+| ++.++++ ...|=..|= .....|+|.-.-|.....+.
T Consensus 20 ~~~~~~~el~~~la~~l~is-~~tvs~~l~-~Le~~gli~r~~~~r~~~~~ 68 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMS-TATFYDAKK-FLIQEGFVKERQERGEKRLY 68 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEE
T ss_pred cCCcCHHHHHHHHHHHcCCC-HHHHHHHHH-HHHHCCCEEEEecCCceEEE
Confidence 467899999 8999998 788877766 77778999988887433333
No 93
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=66.47 E-value=11 Score=28.47 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=33.5
Q ss_pred ccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEE---eccc
Q 044757 107 EMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGK---LNQL 150 (227)
Q Consensus 107 ~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gk---IDQ~ 150 (227)
..+..+|+.+|++.++++ ...|-..+= +....|+|.+. +|..
T Consensus 17 ~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 17 AADGRATLSELATRAGLS-VSAVQSRVR-RLESRGVVQGYSARINPE 61 (150)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEEECTG
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEEeccChh
Confidence 344679999999999998 788887777 88889999754 4553
No 94
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=66.23 E-value=26 Score=25.46 Aligned_cols=45 Identities=11% Similarity=0.037 Sum_probs=33.2
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEE
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFE 155 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~ 155 (227)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 48 ~~~~~~~~la~~l~i~-~~~vs~~l~-~Le~~glv~r~~~~~d~R~~ 92 (147)
T 2hr3_A 48 GGDVTPSELAAAERMR-SSNLAALLR-ELERGGLIVRHADPQDGRRT 92 (147)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEC------CC
T ss_pred CCCCCHHHHHHHhCCC-hhhHHHHHH-HHHHCCCEeeCCCCCCCCce
Confidence 5679999999999998 788887776 88899999988776554433
No 95
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=66.13 E-value=14 Score=26.14 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=31.5
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecc
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQ 149 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ 149 (227)
+..++.+|++.++++ ...|-..+= .....|+|..+=+.
T Consensus 38 ~~~~~~ela~~l~is-~stvs~~L~-~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 38 SEASVGHISHQLNLS-QSNVSHQLK-LLKSVHLVKAKRQG 75 (106)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEET
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeC
Confidence 568999999999998 788887766 77789999987543
No 96
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=65.89 E-value=28 Score=25.62 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=32.2
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcE
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRC 153 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~ 153 (227)
+..++..+|++.++++ ...|=..|= +....|+|.-.-|..++.
T Consensus 59 ~~~~t~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~R 101 (153)
T 2pex_A 59 TDERSVSEIGERLYLD-SATLTPLLK-RLQAAGLVTRTRAASDER 101 (153)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC------
T ss_pred CCCcCHHHHHHHhCCC-cccHHHHHH-HHHHCCCEeecCCcccCC
Confidence 4569999999999998 788888776 888999999887664443
No 97
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=65.47 E-value=35 Score=24.54 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=38.8
Q ss_pred HHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcE
Q 044757 98 KQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRC 153 (227)
Q Consensus 98 r~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~ 153 (227)
+.|.++.+. ...++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 30 ~il~~L~~~--~~~~t~~ela~~l~~~-~stvs~~l~-~L~~~G~v~r~~~~~d~r 81 (152)
T 1ku9_A 30 AVYAILYLS--DKPLTISDIMEELKIS-KGNVSMSLK-KLEELGFVRKVWIKGERK 81 (152)
T ss_dssp HHHHHHHHC--SSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCTTCSS
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecCCCce
Confidence 334444333 2569999999999998 788877766 788899999887765543
No 98
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=64.62 E-value=29 Score=25.59 Aligned_cols=44 Identities=11% Similarity=0.050 Sum_probs=32.4
Q ss_pred cCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcE
Q 044757 108 MNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRC 153 (227)
Q Consensus 108 ~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~ 153 (227)
....++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 54 ~~~~~t~~ela~~l~i~-~~tvs~~l~-~Le~~Glv~r~~~~~d~R 97 (155)
T 3cdh_A 54 DNDAMMITRLAKLSLME-QSRMTRIVD-QMDARGLVTRVADAKDKR 97 (155)
T ss_dssp SCSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEECC------
T ss_pred HCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeccCCCcCC
Confidence 34579999999999998 788887776 888999999776654443
No 99
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=64.11 E-value=23 Score=26.81 Aligned_cols=45 Identities=9% Similarity=-0.026 Sum_probs=36.6
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEE
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEV 156 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V 156 (227)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++....
T Consensus 58 ~~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~~ 102 (168)
T 2nyx_A 58 GPINLATLATLLGVQ-PSATGRMVD-RLVGAELIDRLPHPTSRRELL 102 (168)
T ss_dssp CSEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCSSCEE
T ss_pred CCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEeccCCCCCCeeE
Confidence 469999999999998 788887766 888899999988876554443
No 100
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=62.25 E-value=37 Score=25.75 Aligned_cols=32 Identities=13% Similarity=0.285 Sum_probs=24.1
Q ss_pred ccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE-Eecc
Q 044757 112 LSYDQLLKELEVANVRELEDFLINECMYVGIVKG-KLNQ 149 (227)
Q Consensus 112 isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g-kIDQ 149 (227)
++..++|+.+||+ ...+-.|- + .||+.. .-+.
T Consensus 3 ~~I~e~A~~~gvs-~~tLR~Ye--~---~GLl~p~~r~~ 35 (142)
T 3gp4_A 3 LNIKEASEKSGVS-ADTIRYYE--R---IGLIPPIHRNE 35 (142)
T ss_dssp BCHHHHHHHHTSC-HHHHHHHH--H---HTSSCCCCBCT
T ss_pred CcHHHHHHHHCcC-HHHHHHHH--H---CCCCCCCcCCC
Confidence 6788999999999 88888772 2 488875 4443
No 101
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=61.92 E-value=18 Score=26.87 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHHhhhhhcc-CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecc
Q 044757 89 LVPDQAVKLKQLSVLTLAEM-NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQ 149 (227)
Q Consensus 89 l~~~~~~Klr~LtLlsLa~~-~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ 149 (227)
+++.+ .+-.+.|...... ..-+|..+||+.++++ ..+|-..+= ..+..|+|.=+-|.
T Consensus 30 Lt~~e--~~vll~L~~~~~~~~~~ps~~~LA~~l~~s-~~~V~~~l~-~Le~kGlI~~~~~~ 87 (128)
T 2vn2_A 30 LGEGE--LVLLLHMQSFFEEGVLFPTPAELAERMTVS-AAECMEMVR-RLLQKGMIAIEEHT 87 (128)
T ss_dssp CCHHH--HHHHHHHHHHHTTTCSSCCHHHHHHTSSSC-HHHHHHHHH-HHHHTTSSEECC--
T ss_pred CCHHH--HHHHHHHHHHHhcCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEeEE
Confidence 44444 3344566665443 3348999999999998 899999888 89999999876664
No 102
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=60.19 E-value=14 Score=26.98 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=34.1
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCc
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRR 152 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~ 152 (227)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..++
T Consensus 53 ~~~~~~~la~~l~~~-~~tvs~~l~-~L~~~glv~r~~~~~d~ 93 (147)
T 1z91_A 53 ETLTVKKMGEQLYLD-SGTLTPMLK-RMEQQGLITRKRSEEDE 93 (147)
T ss_dssp SEEEHHHHHHTTTCC-HHHHHHHHH-HHHHHTSEECCBCSSCT
T ss_pred CCCCHHHHHHHHCCC-cCcHHHHHH-HHHHCCCEEeccCCCCC
Confidence 478999999999998 788888777 88899999987765433
No 103
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=57.38 E-value=44 Score=24.16 Aligned_cols=45 Identities=13% Similarity=0.005 Sum_probs=36.8
Q ss_pred cHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEee
Q 044757 113 SYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFA 159 (227)
Q Consensus 113 sy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~ 159 (227)
+..+|++.++++ ...|=..|= .....|+|.-.-|..++....-..
T Consensus 52 ~~~~la~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~~~L 96 (144)
T 3f3x_A 52 SMVYLANRYFVT-QSAITAAVD-KLEAKGLVRRIRDSKDRRIVIVEI 96 (144)
T ss_dssp EHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEEEE
T ss_pred CHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEeccCCCCCceEEEEE
Confidence 999999999998 788877766 888899999998887766554444
No 104
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=56.92 E-value=13 Score=24.02 Aligned_cols=28 Identities=11% Similarity=0.272 Sum_probs=24.2
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhH
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECM 138 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai 138 (227)
....||.+||+.++++ ...|...+- +|+
T Consensus 23 ~~g~s~~eIA~~lgis-~~tV~~~~~-ra~ 50 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVT-RERIRQIEA-KAL 50 (68)
T ss_dssp SSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 3679999999999999 899998877 765
No 105
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=55.90 E-value=61 Score=24.19 Aligned_cols=50 Identities=10% Similarity=-0.021 Sum_probs=37.6
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEeec
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAA 160 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~ 160 (227)
...++..+|++.++++ ...|=..|= .....|+|.-.-|..++....-..+
T Consensus 60 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l~LT 109 (168)
T 3u2r_A 60 PEGMATLQIADRLISR-APDITRLID-RLDDRGLVLRTRKPENRRVVEVALT 109 (168)
T ss_dssp TSCEEHHHHHHHC----CTHHHHHHH-HHHHTTSEEEEEETTEEEEEEEEEC
T ss_pred CCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEeecCCCCCCCeeEeEEC
Confidence 4689999999999998 677877766 8888999999998877766555443
No 106
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=55.53 E-value=43 Score=25.53 Aligned_cols=41 Identities=10% Similarity=0.079 Sum_probs=32.8
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccC
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLR 151 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~ 151 (227)
.+..+..+|++.++++ ...|=.-+= .....|+|..+-+...
T Consensus 69 ~~~~t~~eLa~~lgls-~stvs~hL~-~L~~aGlV~~~~~Gr~ 109 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPAS-RSAISQHLR-VLTEAGLVTPRKDGRF 109 (151)
T ss_dssp GCCEEHHHHHTTSSSC-HHHHHHHHH-HHHHTTSEEEEEETTE
T ss_pred hCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecCCE
Confidence 3569999999999998 778876666 6778999998765433
No 107
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=54.71 E-value=42 Score=24.87 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=41.0
Q ss_pred HHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEeec
Q 044757 100 LSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAA 160 (227)
Q Consensus 100 LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~ 160 (227)
|.++... ++..++..+|++.++++ ...|=..|= +....|+|.=.-|..++....-+.+
T Consensus 41 L~~L~~~-~~~~~t~~eLa~~l~~~-~~tvs~~v~-~Le~~Glv~r~~~~~DrR~~~l~LT 98 (147)
T 4b8x_A 41 LVLLTFS-KSGELPMSKIGERLMVH-PTSVTNTVD-RLVRSGLVAKRPNPNDGRGTLATIT 98 (147)
T ss_dssp HHHHHTS-GGGEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC----CEEEEEC
T ss_pred HHHHHHC-CCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHhCCCEEEeecCCcCceeEEEEC
Confidence 3444333 35679999999999998 778877766 8889999999999877765554443
No 108
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=54.20 E-value=25 Score=24.20 Aligned_cols=36 Identities=14% Similarity=0.040 Sum_probs=30.0
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEe
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKL 147 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkI 147 (227)
+.+++.+|++.++++ ...|-..+= .....|+|.-.-
T Consensus 42 ~~~~~~eLa~~l~is-~~tv~~~L~-~L~~~Glv~~~~ 77 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLS-KKQLDYHLK-VLEAGFCIERVG 77 (96)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEET
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEC
Confidence 569999999999998 788887766 778899998643
No 109
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=53.00 E-value=60 Score=23.24 Aligned_cols=48 Identities=13% Similarity=-0.030 Sum_probs=38.5
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEe
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQF 158 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~ 158 (227)
+..++..+|++.++++ ...|-..|= .....|+|.-.-|..++....-.
T Consensus 45 ~~~~~~~~la~~l~~s-~~tvs~~l~-~L~~~glv~r~~~~~d~r~~~~~ 92 (145)
T 2a61_A 45 EGPKRPGELSVLLGVA-KSTVTGLVK-RLEADGYLTRTPDPADRRAYFLV 92 (145)
T ss_dssp HCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-chhHHHHHH-HHHHCCCeeecCCCCCCceEEEE
Confidence 3569999999999998 788887766 88899999998887666554433
No 110
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=52.83 E-value=37 Score=23.27 Aligned_cols=47 Identities=4% Similarity=-0.003 Sum_probs=33.9
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEE
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQ 157 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~ 157 (227)
+..++..+|++.++++ ...|=.+|= .....|+|.-.-|.....+.++
T Consensus 28 ~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~Glv~~~~d~R~~~v~LT 74 (95)
T 2qvo_A 28 GNDVYIQYIASKVNSP-HSYVWLIIK-KFEEAKMVECELEGRTKIIRLT 74 (95)
T ss_dssp TCCEEHHHHHHHSSSC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEC
T ss_pred CCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCcCccCCCCCCeEEEEEC
Confidence 3459999999999998 788877766 7888999944444433344443
No 111
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=52.73 E-value=25 Score=25.83 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=32.4
Q ss_pred hhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEE
Q 044757 105 LAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQ 157 (227)
Q Consensus 105 La~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~ 157 (227)
|......++..+|++.++++ ...|=..|= +....|+|.-.-|..++....-
T Consensus 48 l~~~~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~~ 98 (150)
T 3fm5_A 48 ACEQAEGVNQRGVAATMGLD-PSQIVGLVD-ELEERGLVVRTLDPSDRRNKLI 98 (150)
T ss_dssp HHHSTTCCCSHHHHHHHTCC-HHHHHHHHH-HHHTTTSEEC-----------C
T ss_pred HHhCCCCcCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeeCCccccchhee
Confidence 33344569999999999998 788887776 8889999998888766654433
No 112
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=52.71 E-value=16 Score=23.89 Aligned_cols=28 Identities=4% Similarity=0.092 Sum_probs=23.6
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhH
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECM 138 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai 138 (227)
....||.+||+.++++ ...|...+- +|+
T Consensus 28 ~~~~s~~eIA~~l~is-~~tV~~~~~-ra~ 55 (73)
T 1ku3_A 28 GREHTLEEVGAYFGVT-RERIRQIEN-KAL 55 (73)
T ss_dssp SSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 3579999999999999 889988776 665
No 113
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=51.83 E-value=36 Score=26.68 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=35.0
Q ss_pred HHHHHHHhhhhhc-cCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCc-eEE
Q 044757 95 VKLKQLSVLTLAE-MNKVLSYDQLLKELEVANVRELEDFLINECMYVGI-VKG 145 (227)
Q Consensus 95 ~Klr~LtLlsLa~-~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gL-I~g 145 (227)
..-|...|+.+.. ..+.+|..+|++.++++ ...|-.-+- ..-..|+ |.+
T Consensus 19 ~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS-~~Ti~rdi~-~L~~~G~~I~~ 69 (187)
T 1j5y_A 19 RQERLKSIVRILERSKEPVSGAQLAEELSVS-RQVIVQDIA-YLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHHHCSSCBCHHHHHHHHTSC-HHHHHHHHH-HHHHHTCCCEE
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEE
Confidence 3456667777655 45679999999999998 777766554 4445687 764
No 114
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=51.39 E-value=31 Score=24.92 Aligned_cols=44 Identities=11% Similarity=0.196 Sum_probs=35.3
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEE
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCF 154 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v 154 (227)
...++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 49 ~~~~~~~ela~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~R~ 92 (142)
T 2bv6_A 49 ESPVNVKKVVTELALD-TGTVSPLLK-RMEQVDLIKRERSEVDQRE 92 (142)
T ss_dssp SSEEEHHHHHHHTTCC-TTTHHHHHH-HHHHTTSEEEEECSSSTTC
T ss_pred cCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEEeecCCCCcce
Confidence 3569999999999998 678877776 8888999998887654443
No 115
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=51.38 E-value=36 Score=24.70 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=39.5
Q ss_pred CcchHHHHHHHHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEE
Q 044757 88 QLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGK 146 (227)
Q Consensus 88 ~l~~~~~~Klr~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gk 146 (227)
.+++.+..-|+ .|..+...+..++..+|++.++++ ...|=..+= .....|+|.-.
T Consensus 10 ~lt~~~~~~L~--~l~~l~~~~~~~s~~ela~~l~is-~~tv~~~l~-~Le~~Gli~r~ 64 (139)
T 2x4h_A 10 NLSRREFSYLL--TIKRYNDSGEGAKINRIAKDLKIA-PSSVFEEVS-HLEEKGLVKKK 64 (139)
T ss_dssp -CCHHHHHHHH--HHHHHHTTTSCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred hcCHHHHHHHH--HHHHHHhcCCCcCHHHHHHHhCCC-hHHHHHHHH-HHHHCCCEEec
Confidence 35555544443 444555566789999999999998 788877766 77788999853
No 116
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=50.29 E-value=28 Score=25.20 Aligned_cols=48 Identities=8% Similarity=-0.010 Sum_probs=37.8
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEee
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFA 159 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~ 159 (227)
..++..+|++.++++ ...|=..|= +....|+|.-+-|..++....-..
T Consensus 52 ~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~i~L 99 (127)
T 2frh_A 52 KEYYLKDIINHLNYK-QPQVVKAVK-ILSQEDYFDKKRNEHDERTVLILV 99 (127)
T ss_dssp SEEEHHHHHHHSSSH-HHHHHHHHH-HHHHTTSSCCBCCSSSSCCCEEEC
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCCCCCCCeeEEEE
Confidence 679999999999998 777777766 888899999887776665444333
No 117
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=49.95 E-value=31 Score=24.90 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=31.3
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecc
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQ 149 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ 149 (227)
+..++.+|++.++++ ...|-..+= .....|+|..+-+.
T Consensus 33 ~~~~~~eLa~~lgis-~stvs~~L~-~L~~~GlV~~~~~g 70 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLT-RSNVSNHLS-CLRGCGLVVATYEG 70 (118)
T ss_dssp TCCSTTTHHHHHSSC-HHHHHHHHH-HHTTTTSEEEEECS
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEEEEEC
Confidence 457899999999998 788887776 77789999887553
No 118
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=49.41 E-value=19 Score=24.62 Aligned_cols=28 Identities=7% Similarity=0.209 Sum_probs=24.3
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhH
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECM 138 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai 138 (227)
+...||.+||+.++++ ...|...+- +|+
T Consensus 36 ~~~~s~~EIA~~lgis-~~tV~~~~~-ra~ 63 (87)
T 1tty_A 36 GKPKTLEEVGQYFNVT-RERIRQIEV-KAL 63 (87)
T ss_dssp SSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 4679999999999999 899998877 775
No 119
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=48.92 E-value=89 Score=24.03 Aligned_cols=50 Identities=4% Similarity=-0.005 Sum_probs=40.5
Q ss_pred cCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEee
Q 044757 108 MNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFA 159 (227)
Q Consensus 108 ~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~ 159 (227)
+...++..+|++.++++ ...|=..|= .....|+|.-.-|+.++....-..
T Consensus 54 ~~~~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~~l~L 103 (189)
T 3nqo_A 54 PEEETTLNNIARKMGTS-KQNINRLVA-NLEKNGYVDVIPSPHDKRAINVKV 103 (189)
T ss_dssp CGGGCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCSSCEEEEE
T ss_pred cCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeccCCCCCCeeEEEE
Confidence 35689999999999998 788887776 888999999999887765544444
No 120
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=48.90 E-value=1e+02 Score=24.65 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=32.7
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecc
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQ 149 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ 149 (227)
.+..++.+|++.++++ ...|=..+= .....|+|...-+.
T Consensus 26 ~~~~s~~eLa~~l~is-~stvs~hLk-~Le~~GLV~~~~~~ 64 (202)
T 2p4w_A 26 KRPYFVSELSRELGVG-QKAVLEHLR-ILEEAGLIESRVEK 64 (202)
T ss_dssp HSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC
T ss_pred hCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEEEeec
Confidence 3568999999999998 788877766 78889999998773
No 121
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=48.63 E-value=36 Score=24.87 Aligned_cols=44 Identities=9% Similarity=0.028 Sum_probs=33.8
Q ss_pred HhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEE
Q 044757 101 SVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGK 146 (227)
Q Consensus 101 tLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gk 146 (227)
.|+.+...+..++..+|++.++++ ...|=..|= .....|+|.-.
T Consensus 12 ~i~~l~~~~~~~~~~ela~~l~vs-~~tvs~~l~-~Le~~Glv~r~ 55 (142)
T 1on2_A 12 QIYMLIEEKGYARVSDIAEALAVH-PSSVTKMVQ-KLDKDEYLIYE 55 (142)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HHHHHHhhcCCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEEe
Confidence 344444445679999999999998 788877766 78889999865
No 122
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=48.53 E-value=17 Score=26.03 Aligned_cols=28 Identities=11% Similarity=0.272 Sum_probs=24.5
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhH
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECM 138 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai 138 (227)
....||++||+.+|++ ...|...+- +|+
T Consensus 37 ~e~~s~~EIA~~lgiS-~~tVr~~~~-rAl 64 (99)
T 3t72_q 37 NTDYTLEEVGKQFDVT-RERIRQIEA-KAL 64 (99)
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 4679999999999999 889998877 776
No 123
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=48.32 E-value=41 Score=23.32 Aligned_cols=27 Identities=11% Similarity=0.292 Sum_probs=22.4
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhH
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECM 138 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai 138 (227)
.-.||.+||+.|+++ ...|...+- +++
T Consensus 41 ~g~s~~eIA~~l~is-~~tV~~~l~-r~~ 67 (95)
T 3c57_A 41 EGLTNKQIADRMFLA-EKTVKNYVS-RLL 67 (95)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 347999999999998 899998776 654
No 124
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=48.20 E-value=15 Score=21.13 Aligned_cols=22 Identities=9% Similarity=0.240 Sum_probs=19.3
Q ss_pred ccHHHHHHHhCCCChhHHHHHHH
Q 044757 112 LSYDQLLKELEVANVRELEDFLI 134 (227)
Q Consensus 112 isy~~I~~~L~i~~~~eVE~lvI 134 (227)
+|+.+||+.++|+ ...|..|+=
T Consensus 22 ~s~~~IA~~lgis-~~Tv~~~~~ 43 (51)
T 1tc3_C 22 VSLHEMSRKISRS-RHCIRVYLK 43 (51)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHH
T ss_pred CCHHHHHHHHCcC-HHHHHHHHh
Confidence 6899999999998 888888764
No 125
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=47.54 E-value=24 Score=25.90 Aligned_cols=43 Identities=16% Similarity=0.057 Sum_probs=34.0
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE--EecccCcE
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG--KLNQLRRC 153 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g--kIDQ~~~~ 153 (227)
...++..+|++.++++ ...|-..|= .....|+|.- .-|..++.
T Consensus 53 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~~~d~R 97 (154)
T 2qww_A 53 TPGISVADLTKRLIIT-GSSAAANVD-GLISLGLVVKLNKTIPNDSM 97 (154)
T ss_dssp STTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEESCC--CTTCT
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCcCCCCCCc
Confidence 3569999999999998 788888777 8889999998 66665553
No 126
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=47.35 E-value=17 Score=24.95 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=23.0
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhH
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECM 138 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai 138 (227)
.-.||.+||+.||++ ...|...+- +|+
T Consensus 52 ~g~s~~eIA~~lgis-~~tV~~~l~-ra~ 78 (92)
T 3hug_A 52 RGWSTAQIATDLGIA-EGTVKSRLH-YAV 78 (92)
T ss_dssp SCCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 447999999999999 899998877 665
No 127
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=46.21 E-value=24 Score=31.33 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=38.6
Q ss_pred HHHHHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE
Q 044757 95 VKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG 145 (227)
Q Consensus 95 ~Klr~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g 145 (227)
+......++.+...+..+|..+|++.++++ ...|-..+= +.+..|+|..
T Consensus 37 r~~n~~~il~~l~~~~~~sr~ela~~~gls-~~tv~~~v~-~L~~~gli~~ 85 (429)
T 1z05_A 37 KQINAGRVYKLIDQKGPISRIDLSKESELA-PASITKITR-ELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHHHHHHCSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEe
Confidence 444444566666667789999999999998 888888776 8899999875
No 128
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=46.20 E-value=39 Score=28.08 Aligned_cols=45 Identities=24% Similarity=0.236 Sum_probs=36.0
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEE
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQ 157 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~ 157 (227)
...++..+|++.++++ ...|-..+= .....|+|+.. ...+.+.++
T Consensus 164 ~~~~s~~eLA~~lgls-ksTv~r~L~-~Le~~GlV~r~--~r~~~~~LT 208 (244)
T 2wte_A 164 TKGTGITELAKMLDKS-EKTLINKIA-ELKKFGILTQK--GKDRKVELN 208 (244)
T ss_dssp HTCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE--TTTTEEEEC
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe--CCccEEEEC
Confidence 3569999999999999 888988877 88889999986 444555554
No 129
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=45.23 E-value=64 Score=23.44 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=30.9
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEec
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLN 148 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkID 148 (227)
+..++.+|++.++++ ...|-..+= ..-..|+|..+-+
T Consensus 58 ~~~s~~ela~~lgis-~stvs~~L~-~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVS-ESAVSHQLR-SLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEe
Confidence 568999999999998 788877766 6778999988655
No 130
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=45.18 E-value=55 Score=20.52 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=21.9
Q ss_pred cccHHHHHHHhCCCChhHHHHHHHHHhH
Q 044757 111 VLSYDQLLKELEVANVRELEDFLINECM 138 (227)
Q Consensus 111 ~isy~~I~~~L~i~~~~eVE~lvI~~ai 138 (227)
..||.+||+.+|++ ...|...+- +|.
T Consensus 31 g~s~~eIA~~lgis-~~tv~~~~~-ra~ 56 (70)
T 2o8x_A 31 GLSYADAAAVCGCP-VGTIRSRVA-RAR 56 (70)
T ss_dssp CCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 48999999999998 888888776 654
No 131
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=44.94 E-value=36 Score=25.97 Aligned_cols=41 Identities=10% Similarity=0.119 Sum_probs=29.0
Q ss_pred cccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcE
Q 044757 111 VLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRC 153 (227)
Q Consensus 111 ~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~ 153 (227)
.++..+|++.++++ ...|=..|= +....|+|.-.-|..++.
T Consensus 86 ~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR 126 (181)
T 2fbk_A 86 GLRPTELSALAAIS-GPSTSNRIV-RLLEKGLIERREDERDRR 126 (181)
T ss_dssp CBCHHHHHHHCSCC-SGGGSSHHH-HHHHHTSEECCC------
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH-HHHHCcCEEecCCCCCCC
Confidence 49999999999998 667666655 777899999877665443
No 132
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=43.27 E-value=82 Score=21.98 Aligned_cols=68 Identities=7% Similarity=0.193 Sum_probs=44.4
Q ss_pred HhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEeecCCCCCcchHHHHHHHHHHHH
Q 044757 101 SVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWL 180 (227)
Q Consensus 101 tLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~~R~~~~~q~~~l~~~L~~W~ 180 (227)
.+++.+..+ ++...|+..++++ ...+-..+= .....|+|+-. .+.+.+|- .=..+...+..|.
T Consensus 12 ~IL~~i~~~--~~~t~La~~~~ls-~~~~~~~l~-~L~~~GLI~~~----~~~~~LT~---------kG~~~l~~l~~~~ 74 (95)
T 1r7j_A 12 AILEACKSG--SPKTRIMYGANLS-YALTGRYIK-MLMDLEIIRQE----GKQYMLTK---------KGEELLEDIRKFN 74 (95)
T ss_dssp HHHHHHTTC--BCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE----TTEEEECH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHhCcC-HHHHHHHHH-HHHHCCCeEEE----CCeeEECh---------hHHHHHHHHHHHH
Confidence 444444433 9999999999999 788877766 77889999876 22344441 1233455666655
Q ss_pred HHHHH
Q 044757 181 DTSDN 185 (227)
Q Consensus 181 ~~~~~ 185 (227)
.-+..
T Consensus 75 ~~l~~ 79 (95)
T 1r7j_A 75 EMRKN 79 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 133
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=42.91 E-value=24 Score=24.84 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=31.6
Q ss_pred ccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEE
Q 044757 107 EMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGK 146 (227)
Q Consensus 107 ~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gk 146 (227)
.++..++-.+|++.++++ ...|=..+- .....|+|...
T Consensus 29 ~~g~~~s~~eLa~~lgvs-~~tV~~~L~-~L~~~GlV~~~ 66 (110)
T 1q1h_A 29 DKGTEMTDEEIANQLNIK-VNDVRKKLN-LLEEQGFVSYR 66 (110)
T ss_dssp HHCSCBCHHHHHHTTTSC-HHHHHHHHH-HHHHHTSCEEE
T ss_pred HcCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 345468999999999998 788877777 78889999865
No 134
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=41.74 E-value=54 Score=24.59 Aligned_cols=37 Identities=14% Similarity=0.261 Sum_probs=26.9
Q ss_pred HHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcC
Q 044757 100 LSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVG 141 (227)
Q Consensus 100 LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~g 141 (227)
+.++.+...+ .||.+|++.++++ ...|.. +- +++..|
T Consensus 66 ~eV~klL~~G--~syreIA~~~g~S-~aTIsR-v~-r~L~~g 102 (119)
T 3kor_A 66 LQVAKMIKQG--YTYATIEQESGAS-TATISR-VK-RSLQWG 102 (119)
T ss_dssp HHHHHHHHHT--CCHHHHHHHHCCC-HHHHHH-HH-HHHHSS
T ss_pred HHHHHHHHcC--CCHHHHHHHHCCC-HHHHHH-HH-HHHhcC
Confidence 4555554333 9999999999998 888886 55 666554
No 135
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=41.47 E-value=34 Score=28.32 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=36.4
Q ss_pred cCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEE
Q 044757 108 MNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQ 157 (227)
Q Consensus 108 ~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~ 157 (227)
.+...+..+|++.++++ ..+|+.-+- +....|+|+- ..+++|.+.
T Consensus 175 ~~~~~t~~~la~~~~l~-~~~V~~~l~-~L~~~~~v~~---~~~~~~~~~ 219 (232)
T 2qlz_A 175 LNGRATVEELSDRLNLK-EREVREKIS-EMARFVPVKI---INDNTVVLD 219 (232)
T ss_dssp HSSEEEHHHHHHHHTCC-HHHHHHHHH-HHTTTSCEEE---ETTTEEEEC
T ss_pred hcCCCCHHHHHHHhCcC-HHHHHHHHH-HHHhcCCeEE---ecCCeEEec
Confidence 36889999999999999 899998888 9999999982 334556553
No 136
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=39.12 E-value=58 Score=27.64 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=39.5
Q ss_pred HHHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecc
Q 044757 97 LKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQ 149 (227)
Q Consensus 97 lr~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ 149 (227)
.|++..+........++-++|++.|+++ ...|=..+- .+-..|+|+-++..
T Consensus 7 ~~~~~~ia~l~~~~~~~~~ela~~l~vS-~~tIrRdL~-~l~~~G~v~iri~g 57 (315)
T 2w48_A 7 IRLIVKIAQLYYEQDMTQAQIARELGIY-RTTISRLLK-RGREQGIVTIAINY 57 (315)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEECS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEEecC
Confidence 4444444444445669999999999998 888988888 89999999977755
No 137
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=38.99 E-value=67 Score=22.65 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=30.0
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEec
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLN 148 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkID 148 (227)
...++.+|++.++++ ...|=..+= .....|+|.-.=+
T Consensus 44 ~~~s~~ela~~l~is-~stvsr~l~-~Le~~Glv~~~~~ 80 (119)
T 2lkp_A 44 GPLPVTDLAEAIGME-QSAVSHQLR-VLRNLGLVVGDRA 80 (119)
T ss_dssp CCCCHHHHHHHHSSC-HHHHHHHHH-HHHHHCSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEec
Confidence 568999999999998 788877766 6777899976543
No 138
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=38.60 E-value=14 Score=27.29 Aligned_cols=44 Identities=7% Similarity=0.004 Sum_probs=25.4
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEE
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFE 155 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~ 155 (227)
..++..+|++.++++ ...|=..|= +....|+|.-.-|..++...
T Consensus 56 ~~~t~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~DrR~~ 99 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRR-GASITSMLQ-GLEKKGYIERRIPENNARQK 99 (148)
T ss_dssp TCCCHHHHHHC-------CHHHHHH-HHHHTTSBCCC--------C
T ss_pred CCCCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEeeCCCCCchhh
Confidence 679999999999998 677777666 88889999988777665443
No 139
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=38.09 E-value=47 Score=22.95 Aligned_cols=27 Identities=19% Similarity=0.275 Sum_probs=21.9
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhH
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECM 138 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai 138 (227)
.-.++.+||+.|+|+ ...|+..+- +++
T Consensus 43 ~G~s~~eIA~~L~iS-~~TV~~~~~-~i~ 69 (90)
T 3ulq_B 43 KGFTNQEIADALHLS-KRSIEYSLT-SIF 69 (90)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 347999999999998 888988766 543
No 140
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=37.33 E-value=24 Score=26.56 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.6
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhH
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECM 138 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai 138 (227)
..+||.+||+.||++ ...|...+- +|.
T Consensus 108 ~g~s~~EIA~~lgis-~~tV~~~l~-rar 134 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVD-TSEVETLVT-EAL 134 (157)
T ss_dssp SCCCHHHHHHTTTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 458999999999999 899998887 765
No 141
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=36.03 E-value=60 Score=21.73 Aligned_cols=27 Identities=7% Similarity=0.194 Sum_probs=21.9
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhH
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECM 138 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai 138 (227)
.-.++.+||+.++++ ...|...+- ++.
T Consensus 35 ~g~s~~eIA~~l~is-~~tV~~~l~-r~~ 61 (82)
T 1je8_A 35 QGLPNKMIARRLDIT-ESTVKVHVK-HML 61 (82)
T ss_dssp TTCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 348999999999998 888887766 543
No 142
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=35.91 E-value=35 Score=22.81 Aligned_cols=33 Identities=12% Similarity=0.285 Sum_probs=24.7
Q ss_pred HhhhhhccCccccHHHHHHHhC-----CCChhHHHHHHH
Q 044757 101 SVLTLAEMNKVLSYDQLLKELE-----VANVRELEDFLI 134 (227)
Q Consensus 101 tLlsLa~~~~~isy~~I~~~L~-----i~~~~eVE~lvI 134 (227)
.|+...+..+.++|++|.+.|. ++ .+++|.++-
T Consensus 13 ~Li~~gK~~G~lTy~EI~d~l~~~~~~ld-~e~id~i~~ 50 (72)
T 2k6x_A 13 KLISLGKKKGYITYEDIDKAFPPDFEGFD-TNLIERIHE 50 (72)
T ss_dssp HHHHHHHHHSSCBHHHHHHHCSCSCSSCC-HHHHHHHHH
T ss_pred HHHHHHhHcCCccHHHHHHhCccccccCC-HHHHHHHHH
Confidence 3666777677899999999985 33 677887654
No 143
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=35.86 E-value=31 Score=21.34 Aligned_cols=23 Identities=9% Similarity=0.280 Sum_probs=18.5
Q ss_pred cccHHHHHHHhCCCChhHHHHHHH
Q 044757 111 VLSYDQLLKELEVANVRELEDFLI 134 (227)
Q Consensus 111 ~isy~~I~~~L~i~~~~eVE~lvI 134 (227)
-.|+.+||+.++++ ...|...+-
T Consensus 13 g~s~~eIA~~l~is-~~tV~~~~~ 35 (61)
T 2jpc_A 13 GYTNHGISEKLHIS-IKTVETHRM 35 (61)
T ss_dssp SCCSHHHHHHTCSC-HHHHHHHHH
T ss_pred CCCHHHHHHHhCCC-HHHHHHHHH
Confidence 46899999999998 777776654
No 144
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=35.05 E-value=32 Score=25.11 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=23.1
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhH
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECM 138 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai 138 (227)
...||.+||+.||++ ...|...+- +|+
T Consensus 123 ~g~s~~EIA~~lgis-~~tV~~~~~-ra~ 149 (164)
T 3mzy_A 123 RGYSYREIATILSKN-LKSIDNTIQ-RIR 149 (164)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 467999999999999 899988877 665
No 145
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=34.84 E-value=33 Score=25.11 Aligned_cols=37 Identities=8% Similarity=-0.082 Sum_probs=31.6
Q ss_pred cCccccHHHHHHHh--CCCChhHHHHHHHHHhHhcCceEEE
Q 044757 108 MNKVLSYDQLLKEL--EVANVRELEDFLINECMYVGIVKGK 146 (227)
Q Consensus 108 ~~~~isy~~I~~~L--~i~~~~eVE~lvI~~ai~~gLI~gk 146 (227)
....+|+.+|++.+ +++ ...|-.-+= ..-..|+|+..
T Consensus 24 ~~g~~s~~eLA~~l~~giS-~~aVs~rL~-~Le~~GLV~~~ 62 (111)
T 3b73_A 24 EEGNGSPKELEDRDEIRIS-KSSVSRRLK-KLADHDLLQPL 62 (111)
T ss_dssp HHSCBCHHHHHTSTTCCSC-HHHHHHHHH-HHHHTTSEEEC
T ss_pred HcCCCCHHHHHHHHhcCCC-HHHHHHHHH-HHHHCCCEEec
Confidence 34589999999999 998 788888777 78899999984
No 146
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=34.82 E-value=79 Score=22.07 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=37.0
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceE--EEecccCcEEEEEe
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVK--GKLNQLRRCFEVQF 158 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~--gkIDQ~~~~v~V~~ 158 (227)
+.-|+-.+|++.++++ ...|=..+= .....|+|+ -..+..++.+++.+
T Consensus 34 ~~gi~qkeLa~~~~l~-~~tvt~iLk-~LE~kglIkr~~~~~~~~rKvy~Ly 83 (91)
T 2dk5_A 34 NKGIWSRDVRYKSNLP-LTEINKILK-NLESKKLIKAVKSVAASKKKVYMLY 83 (91)
T ss_dssp TTCEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEECCSSCSSCCEEEES
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEecCCCCCCcEEEEEe
Confidence 5579999999999999 788887766 888899999 44444556666554
No 147
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=34.64 E-value=12 Score=28.71 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=28.5
Q ss_pred ccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEE
Q 044757 107 EMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGK 146 (227)
Q Consensus 107 ~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gk 146 (227)
.++..+|+.+|++.+|++ ...|-.-+- ..-..|+|.+.
T Consensus 23 ~~~~~ls~~eLa~~lgvS-r~~vr~al~-~L~~~Gli~~~ 60 (163)
T 2gqq_A 23 QKDGRISNVELSKRVGLS-PTPCLERVR-RLERQGFIQGY 60 (163)
T ss_dssp HHCSSCCTTGGGTSSSCC-TTTSSSTHH-HHHHHTSEEEE
T ss_pred HhCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEE
Confidence 345667999999999998 566654555 56778999863
No 148
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=33.75 E-value=50 Score=26.18 Aligned_cols=46 Identities=11% Similarity=-0.108 Sum_probs=33.7
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEE
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQ 157 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~ 157 (227)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++....-
T Consensus 61 ~~~t~~eLa~~l~i~-~stvs~~l~-~Le~~GlV~r~~~~~DrR~~~l 106 (207)
T 2fxa_A 61 NGASISEIAKFGVMH-VSTAFNFSK-KLEERGYLRFSKRLNDKRNTYV 106 (207)
T ss_dssp TSEEHHHHHHHTTCC-HHHHHHHHH-HHHHHTSEEEECC------CEE
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEecCCCCCceEEE
Confidence 469999999999998 788877766 8889999999988766554433
No 149
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=33.06 E-value=46 Score=22.92 Aligned_cols=40 Identities=18% Similarity=0.041 Sum_probs=32.8
Q ss_pred hhhhccCccccHHHHHHHhCCCChh-HHHHHHHHHhHhcCceE
Q 044757 103 LTLAEMNKVLSYDQLLKELEVANVR-ELEDFLINECMYVGIVK 144 (227)
Q Consensus 103 lsLa~~~~~isy~~I~~~L~i~~~~-eVE~lvI~~ai~~gLI~ 144 (227)
+.+-...+..+=.+||+.|+|+ .. .|-.-+- +.-..|+|.
T Consensus 17 L~~Lk~~g~~ta~eiA~~Lgit-~~~aVr~hL~-~Le~eGlV~ 57 (79)
T 1xmk_A 17 CDYLFNVSDSSALNLAKNIGLT-KARDINAVLI-DMERQGDVY 57 (79)
T ss_dssp HHHHHHTCCEEHHHHHHHHCGG-GHHHHHHHHH-HHHHTTSEE
T ss_pred HHHHHHcCCcCHHHHHHHcCCC-cHHHHHHHHH-HHHHCCCEE
Confidence 3444456778999999999999 67 8988888 888899998
No 150
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=32.54 E-value=36 Score=20.66 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.4
Q ss_pred cccHHHHHHHhCCCChhHHHHHH
Q 044757 111 VLSYDQLLKELEVANVRELEDFL 133 (227)
Q Consensus 111 ~isy~~I~~~L~i~~~~eVE~lv 133 (227)
-.|+.+||+.++++ ...|-.++
T Consensus 31 g~s~~eIA~~lgis-~~TV~~~l 52 (55)
T 2x48_A 31 GYTVQQIANALGVS-ERKVRRYL 52 (55)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHH
Confidence 36999999999998 78887664
No 151
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=32.38 E-value=61 Score=26.42 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=35.9
Q ss_pred HHHHhhhh-hccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEE
Q 044757 98 KQLSVLTL-AEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGK 146 (227)
Q Consensus 98 r~LtLlsL-a~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gk 146 (227)
|-+.++.+ +...+.++..+|++.++++ ...|-.++- .....|+|.-.
T Consensus 9 r~l~iL~~l~~~~~~~~~~ela~~~gl~-~stv~r~l~-~L~~~G~v~~~ 56 (249)
T 1mkm_A 9 KAFEILDFIVKNPGDVSVSEIAEKFNMS-VSNAYKYMV-VLEEKGFVLRK 56 (249)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEC
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEC
Confidence 33555544 3344579999999999998 888888877 77889999864
No 152
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=32.36 E-value=75 Score=27.69 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=36.7
Q ss_pred HHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE
Q 044757 99 QLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG 145 (227)
Q Consensus 99 ~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g 145 (227)
...++.+...+..+|-.+|++.++++ ...|-..+= +.+..|+|..
T Consensus 18 ~~~il~~l~~~~~~sr~~la~~~~ls-~~tv~~~v~-~L~~~g~i~~ 62 (406)
T 1z6r_A 18 AGAVYRLIDQLGPVSRIDLSRLAQLA-PASITKIVH-EMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHSSCSCCHHHHHHHTTCC-HHHHHHHHH-HHHHHTSEEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCcEEe
Confidence 34466666677889999999999998 888888776 8888999865
No 153
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=32.01 E-value=78 Score=20.38 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=21.8
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhH
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECM 138 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai 138 (227)
.-.++.+||+.++++ ...|...+- ++.
T Consensus 30 ~g~s~~eIA~~l~is-~~tV~~~~~-r~~ 56 (79)
T 1x3u_A 30 AGLPNKSIAYDLDIS-PRTVEVHRA-NVM 56 (79)
T ss_dssp TTCCHHHHHHHTTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 457999999999998 888887765 544
No 154
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=31.98 E-value=91 Score=19.20 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=30.8
Q ss_pred HHHHHhhhhhccCccccHHHHHHHh-----CCCChhHHHHHHHHHhHhcCce
Q 044757 97 LKQLSVLTLAEMNKVLSYDQLLKEL-----EVANVRELEDFLINECMYVGIV 143 (227)
Q Consensus 97 lr~LtLlsLa~~~~~isy~~I~~~L-----~i~~~~eVE~lvI~~ai~~gLI 143 (227)
-|...|+.+...++.++-++|++.| +++ ...|-.-+= ..|++
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs-~~Tv~R~L~----~lg~v 51 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVT-QATVSRDIK----ELHLV 51 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCC-HHHHHHHHH----HHTCE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcC-HHHHHHHHH----HcCCE
Confidence 3555556666667889999999999 998 777776543 35777
No 155
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=31.26 E-value=38 Score=25.73 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=23.5
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhH
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECM 138 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai 138 (227)
...||.+||+.+|++ ...|...+- +|.
T Consensus 155 ~g~s~~EIA~~lgis-~~tV~~~l~-ra~ 181 (194)
T 1or7_A 155 DGLSYEEIAAIMDCP-VGTVRSRIF-RAR 181 (194)
T ss_dssp TCCCHHHHHHHTTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 458999999999999 899998877 765
No 156
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=30.75 E-value=87 Score=19.73 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=18.6
Q ss_pred cccHHHHHHHhCCCChhHHHHHHH
Q 044757 111 VLSYDQLLKELEVANVRELEDFLI 134 (227)
Q Consensus 111 ~isy~~I~~~L~i~~~~eVE~lvI 134 (227)
..|+.+||+.++++ ...|...+-
T Consensus 26 g~s~~eIA~~l~is-~~tV~~~~~ 48 (74)
T 1fse_A 26 DKTTKEIASELFIS-EKTVRNHIS 48 (74)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHHH
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH
Confidence 35999999999998 777776654
No 157
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=30.55 E-value=2.2e+02 Score=23.08 Aligned_cols=100 Identities=6% Similarity=0.015 Sum_probs=60.7
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE-EecccCcEEEEEe-e----------cCCCCCcchHHHHHHHHH
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG-KLNQLRRCFEVQF-A----------AGRDLRHGQLENMMQSLT 177 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g-kIDQ~~~~v~V~~-~----------~~R~~~~~q~~~l~~~L~ 177 (227)
+.++..++|+.+||+ ...+-.| +- .||+.. +.|..++.=.-+. - ..-.|+.+++..+.+.
T Consensus 4 ~~~~i~e~a~~~gvs-~~tlr~y---~~--~gll~p~~~d~~~g~R~y~~~~~~~l~~i~~l~~~g~~l~~i~~~~~~-- 75 (278)
T 1r8e_A 4 SYYSIGEVSKLANVS-IKALRYY---DK--IDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQDL-- 75 (278)
T ss_dssp CEEEHHHHHHHHTCC-HHHHHHH---HH--TTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTTCCHHHHHHHTTS--
T ss_pred CcEeHHHHHHHHCcC-HHHHHHH---HH--CCCCCCCccCCCCCccccCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh--
Confidence 457889999999999 8888876 22 488864 5654444222221 0 0112333444433221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 044757 178 NWLDTSDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKS 221 (227)
Q Consensus 178 ~W~~~~~~~l~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (227)
. ...+...++++...+.++.++.++....++..++..++.
T Consensus 76 -~---~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~ 115 (278)
T 1r8e_A 76 -E---MEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQ 115 (278)
T ss_dssp -C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -C---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 345566777777777777777777777777766665544
No 158
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=30.38 E-value=91 Score=20.41 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=30.7
Q ss_pred ccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceE
Q 044757 107 EMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVK 144 (227)
Q Consensus 107 ~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~ 144 (227)
+.++.+-.+.+++.++++ .++|=+.+= +.-..|||+
T Consensus 21 ~sGGildI~~~a~kygV~-kdeV~~~Lr-rLe~KGLI~ 56 (59)
T 2xvc_A 21 NNGGFLDIEHFSKVYGVE-KQEVVKLLE-ALKNKGLIA 56 (59)
T ss_dssp HTTSEEEHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEE
T ss_pred HcCCEEeHHHHHHHhCCC-HHHHHHHHH-HHHHCCCee
Confidence 367899999999999999 888888777 777888886
No 159
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=29.98 E-value=82 Score=25.17 Aligned_cols=52 Identities=4% Similarity=0.149 Sum_probs=40.0
Q ss_pred HhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEE
Q 044757 101 SVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQ 157 (227)
Q Consensus 101 tLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~ 157 (227)
+|..|...+..++-.+||+.++++ ...|=..|= +.-..|+|.=.=| +.+++|
T Consensus 10 ~I~~l~~~~~~~~~~~lA~~l~vs-~~tvs~~l~-~Le~~GlV~r~~~---~~i~LT 61 (214)
T 3hrs_A 10 CLYELGTRHNKITNKEIAQLMQVS-PPAVTEMMK-KLLAEELLIKDKK---AGYLLT 61 (214)
T ss_dssp HHHHTTSSCSCCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEETT---TEEEEC
T ss_pred HHHHHHhcCCCcCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEEecC---CCeEEC
Confidence 555666677889999999999998 788887777 8888999976543 344444
No 160
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=29.66 E-value=21 Score=24.96 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhHhcCceEEEecc
Q 044757 127 RELEDFLINECMYVGIVKGKLNQ 149 (227)
Q Consensus 127 ~eVE~lvI~~ai~~gLI~gkIDQ 149 (227)
..||+.+| .....|-|.|+||.
T Consensus 37 ~~VE~~Li-~lAq~Gqi~~ki~e 58 (80)
T 1eij_A 37 EQIELQLI-QLAQMGRVRSKITD 58 (80)
T ss_dssp HHHHHHHH-HHHHCCSSCCCCCH
T ss_pred HHHHHHHH-HHHHcCCCCCCcCH
Confidence 57999999 89999999999886
No 161
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=28.72 E-value=76 Score=26.15 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=42.5
Q ss_pred HHHHhhhhhc-cCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEE
Q 044757 98 KQLSVLTLAE-MNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQ 157 (227)
Q Consensus 98 r~LtLlsLa~-~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~ 157 (227)
|-+.|+.+.. ....++..+|++.++++ ...+=.++- .....|+|.- |..++...+.
T Consensus 7 Ral~IL~~l~~~~~~lsl~eia~~lgl~-ksT~~RlL~-tL~~~G~v~~--~~~~~~Y~lG 63 (260)
T 3r4k_A 7 KALTLLTYFNHGRLEIGLSDLTRLSGMN-KATVYRLMS-ELQEAGFVEQ--VEGARSYRLG 63 (260)
T ss_dssp HHHHHHTTCBTTBSEEEHHHHHHHHCSC-HHHHHHHHH-HHHHTTSEEE--CSSSSEEEEC
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEE--cCCCCcEEcC
Confidence 4467776554 45789999999999999 889998888 7888999974 4444554443
No 162
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=28.62 E-value=1.5e+02 Score=20.60 Aligned_cols=59 Identities=5% Similarity=0.083 Sum_probs=41.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHhhh
Q 044757 164 LRHGQLENMMQSLTNWLDTSDNILSVIQDKIKWAETM-------CEEDKKHKMEVKSHLQDVKKSV 222 (227)
Q Consensus 164 ~~~~q~~~l~~~L~~W~~~~~~~l~~ie~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 222 (227)
++++++......+......++..+..|+..+..+... ...=.....+|...+.++...|
T Consensus 11 v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L 76 (103)
T 4i0x_B 11 FDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGL 76 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999999998888776655 1222445555665555555544
No 163
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=27.74 E-value=82 Score=25.57 Aligned_cols=55 Identities=9% Similarity=0.045 Sum_probs=39.5
Q ss_pred HHHHhhhhh-ccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEE
Q 044757 98 KQLSVLTLA-EMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEV 156 (227)
Q Consensus 98 r~LtLlsLa-~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V 156 (227)
|-+.++.+. .....++..+|++.++++ ...|=.++- .....|+|.- |...+...+
T Consensus 7 r~l~iL~~l~~~~~~~s~~ela~~~gl~-~stv~r~l~-~L~~~G~v~~--~~~~~~Y~l 62 (241)
T 2xrn_A 7 RAASIMRALGSHPHGLSLAAIAQLVGLP-RSTVQRIIN-ALEEEFLVEA--LGPAGGFRL 62 (241)
T ss_dssp HHHHHHHHHHTCTTCEEHHHHHHHTTSC-HHHHHHHHH-HHHTTTSEEE--CGGGCEEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEE--eCCCCeEEE
Confidence 345556543 344579999999999998 888988877 7888999976 333444433
No 164
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=27.68 E-value=81 Score=28.82 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=38.4
Q ss_pred HHHHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE
Q 044757 96 KLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG 145 (227)
Q Consensus 96 Klr~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g 145 (227)
.+.+|-++.+|. ++-+.-+||+.+++| .+.+...+- .....|||++
T Consensus 389 ~~~~l~~L~~~d--G~~slldia~~~~~~-~~~~~~~~~-~l~~~~l~~~ 434 (435)
T 3k9t_A 389 EFAMFWVLNMSD--GKNSLLDIAYKSGME-FRRIKYAAD-ALYRVELLKL 434 (435)
T ss_dssp HHHHHHHHHHCE--EEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTCEEE
T ss_pred HHHHHHHHHhcc--CCccHHHHHHHhCcC-HHHHHHHHH-HHHHccCccc
Confidence 456778888874 677889999999999 899998877 8888999984
No 165
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=27.66 E-value=43 Score=22.79 Aligned_cols=26 Identities=4% Similarity=0.194 Sum_probs=21.5
Q ss_pred cccHHHHHHHhCCCChhHHHHHHHHHhH
Q 044757 111 VLSYDQLLKELEVANVRELEDFLINECM 138 (227)
Q Consensus 111 ~isy~~I~~~L~i~~~~eVE~lvI~~ai 138 (227)
-.|+.+||+.|+++ ...|...+- +++
T Consensus 44 g~s~~eIA~~l~is-~~tV~~~l~-r~~ 69 (91)
T 2rnj_A 44 GYSNQEIASASHIT-IKTVKTHVS-NIL 69 (91)
T ss_dssp TCCTTHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 48999999999998 888887766 544
No 166
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=27.56 E-value=23 Score=24.86 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhHhcCceEEEecc
Q 044757 127 RELEDFLINECMYVGIVKGKLNQ 149 (227)
Q Consensus 127 ~eVE~lvI~~ai~~gLI~gkIDQ 149 (227)
..||+.+| .....|-|.|+||.
T Consensus 35 ~~VE~~Li-~lAq~Gqi~~ki~e 56 (81)
T 2fh0_A 35 QAVETYLK-KLIATNNVTHKITE 56 (81)
T ss_dssp HHHHHHHH-HHHHHTCCSCCBCH
T ss_pred HHHHHHHH-HHHHcCCCCCCcCH
Confidence 57999999 88999999999886
No 167
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=27.49 E-value=1.6e+02 Score=20.71 Aligned_cols=41 Identities=10% Similarity=0.149 Sum_probs=32.2
Q ss_pred hhhccCccc-cHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEE
Q 044757 104 TLAEMNKVL-SYDQLLKELEVANVRELEDFLINECMYVGIVKGK 146 (227)
Q Consensus 104 sLa~~~~~i-sy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gk 146 (227)
....++..+ +..+|++.++++ ..-|-.-+- ..-..|+|.-.
T Consensus 35 ~~l~~g~~lps~~eLa~~lgVS-r~tVr~al~-~L~~~GlI~~~ 76 (102)
T 2b0l_A 35 EELDGNEGLLVASKIADRVGIT-RSVIVNALR-KLESAGVIESR 76 (102)
T ss_dssp TSSBTTEEEECHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred hhhcCCCcCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 444556666 999999999998 788877767 77889998764
No 168
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=27.49 E-value=55 Score=23.15 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=19.2
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHH
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLI 134 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI 134 (227)
.-.++.+||+.|+|+ ...|...+-
T Consensus 48 ~G~s~~EIA~~L~iS-~~TV~~~l~ 71 (99)
T 1p4w_A 48 EGFLVTEIAKKLNRS-IKTISSQKK 71 (99)
T ss_dssp HTCCHHHHHHHHTSC-HHHHHHHHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH
Confidence 347899999999998 777776655
No 169
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=27.31 E-value=75 Score=30.81 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=33.4
Q ss_pred HHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceE
Q 044757 100 LSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVK 144 (227)
Q Consensus 100 LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~ 144 (227)
++++-+-+....+||++|++.++++ .+++..-+- ..+..|++.
T Consensus 592 a~iLllFn~~~~~t~~ei~~~t~i~-~~~l~r~L~-~l~k~~iL~ 634 (760)
T 1ldj_A 592 MAILLQYNTEDAYTVQQLTDSTQIK-MDILAQVLQ-ILLKSKLLV 634 (760)
T ss_dssp HHHHHGGGSSSEEEHHHHHHHTCCC-HHHHHHHHH-HHHHTTTEE
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcce
Confidence 4444445567789999999999999 788877766 667788885
No 170
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=26.75 E-value=1.4e+02 Score=23.19 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=30.3
Q ss_pred ccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEE
Q 044757 107 EMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGK 146 (227)
Q Consensus 107 ~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gk 146 (227)
+.+...|+.+|+++++++ ...|-..+- ..-..|+|...
T Consensus 20 ~~g~~~s~~eia~~lgl~-~~tv~~~l~-~Le~~G~i~~~ 57 (196)
T 3k2z_A 20 KNGYPPSVREIARRFRIT-PRGALLHLI-ALEKKGYIERK 57 (196)
T ss_dssp HHSSCCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEECC
T ss_pred HhCCCCCHHHHHHHcCCC-cHHHHHHHH-HHHHCCCEEec
Confidence 345679999999999999 557888776 66788998754
No 171
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=26.46 E-value=95 Score=21.40 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhhhccCccc-cHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEE
Q 044757 94 AVKLKQLSVLTLAEMNKVL-SYDQLLKELEVANVRELEDFLINECMYVGIVKGK 146 (227)
Q Consensus 94 ~~Klr~LtLlsLa~~~~~i-sy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gk 146 (227)
...++..-+-....++..+ |..+|++.++++ ...|-.-+- ..-..|+|..+
T Consensus 17 ~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vS-r~tvr~al~-~L~~~Gli~~~ 68 (102)
T 1v4r_A 17 ATHFRTLIKSGELAPGDTLPSVADIRAQFGVA-AKTVSRALA-VLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSC-TTHHHHHTT-TTTTSSCCEEE
T ss_pred HHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe
Confidence 3445443333244456677 899999999998 777877666 67788998753
No 172
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=25.89 E-value=60 Score=23.37 Aligned_cols=27 Identities=11% Similarity=0.115 Sum_probs=23.0
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhH
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECM 138 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai 138 (227)
...||.+||+.++++ ...|...+- +|.
T Consensus 40 ~g~s~~EIA~~lgiS-~~tV~~~l~-ra~ 66 (113)
T 1xsv_A 40 EDYSLSEIADTFNVS-RQAVYDNIR-RTG 66 (113)
T ss_dssp SCCCHHHHHHHTTCC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 458999999999998 889998877 665
No 173
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=25.75 E-value=92 Score=26.60 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=31.8
Q ss_pred HHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceE
Q 044757 99 QLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVK 144 (227)
Q Consensus 99 ~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~ 144 (227)
...|+.+...++.+|..+|++.++++ ...|-.-+- ..-..|++.
T Consensus 7 ~~~Il~~L~~~~~~s~~eLa~~l~vS-~~ti~r~l~-~L~~~G~~i 50 (321)
T 1bia_A 7 PLKLIALLANGEFHSGEQLGETLGMS-RAAINKHIQ-TLRDWGVDV 50 (321)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHHHTSC-HHHHHHHHH-HHHHTTCCC
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHhCCCcE
Confidence 34445544567789999999999998 777776655 555567764
No 174
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=25.66 E-value=1.1e+02 Score=25.15 Aligned_cols=46 Identities=9% Similarity=0.184 Sum_probs=36.1
Q ss_pred HHHHhhhhhc-cCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE
Q 044757 98 KQLSVLTLAE-MNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG 145 (227)
Q Consensus 98 r~LtLlsLa~-~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g 145 (227)
|-+.++.+.. ..+.++..+|++.++++ ...|=.++- .....|+|.-
T Consensus 24 r~l~iL~~l~~~~~~~~~~eia~~~gl~-kstv~r~l~-tL~~~G~v~~ 70 (260)
T 2o0y_A 24 RVIDLLELFDAAHPTRSLKELVEGTKLP-KTTVVRLVA-TMCARSVLTS 70 (260)
T ss_dssp HHHHHHTTCBTTBSSBCHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEE
T ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEE
Confidence 4466666543 45689999999999999 788888777 6778899876
No 175
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.48 E-value=1.7e+02 Score=20.28 Aligned_cols=46 Identities=15% Similarity=0.063 Sum_probs=26.8
Q ss_pred EEeecCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044757 156 VQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQDKIKWAETMC 201 (227)
Q Consensus 156 V~~~~~R~~~~~q~~~l~~~L~~W~~~~~~~l~~ie~~~~~~~~~~ 201 (227)
|.+..+++|=..........|..=.+.+..-+..++.+........
T Consensus 50 vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l 95 (107)
T 1fxk_A 50 VYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKL 95 (107)
T ss_dssp EEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666666666666666666666655555555554444433
No 176
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=25.42 E-value=2.7e+02 Score=22.62 Aligned_cols=75 Identities=8% Similarity=0.009 Sum_probs=48.8
Q ss_pred CchHHHHHHHHHhcCCHhhHHhhhhcCCCcc---hHHHHHHHHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHH
Q 044757 60 ESSVYIDLLRLFAHGTWTDYKSNAAHLPQLV---PDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLI 134 (227)
Q Consensus 60 ~~~~l~~LL~iF~~G~~~dy~~~~~~~~~l~---~~~~~Klr~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI 134 (227)
+-..+..|=..+-.|++..|.+.....+.+. ..-...+|.=..-.+...+++|+.+.+++-||..+.++++.|+-
T Consensus 98 ~I~~i~~L~~~L~~~~y~~fW~~l~~~~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~ 175 (226)
T 1rz4_A 98 PIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMS 175 (226)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHSCTTCHHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhcChhHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHH
Confidence 3456778888899999998886432222221 11223444422333344589999999999996334899999977
No 177
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=24.99 E-value=57 Score=23.65 Aligned_cols=44 Identities=5% Similarity=0.093 Sum_probs=32.0
Q ss_pred HHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE
Q 044757 98 KQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG 145 (227)
Q Consensus 98 r~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g 145 (227)
|++.++.-.. ...+|+.+.++..+|+ ..+++.|.= +...|=+.|
T Consensus 38 rK~~VV~~v~-~g~lS~~EAa~ry~Is-~~ei~~W~r--~y~~~G~~a 81 (101)
T 2oa4_A 38 RKIAVVRGVI-YGLITLAEAKQTYGLS-DEEFNSWVS--ALAEHGKDA 81 (101)
T ss_dssp HHHHHHHHHH-HTTCCHHHHHHTTCSS-HHHHHHHHH--HHHCCCSSS
T ss_pred HHHHHHHHHH-hCCCCHHHHHHHhCCC-HHHHHHHHH--HHHHHhHHH
Confidence 3556665443 5789999999999995 999999954 565554443
No 178
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=24.48 E-value=66 Score=18.49 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=17.7
Q ss_pred ccHHHHHHHhCCCChhHHHHHH
Q 044757 112 LSYDQLLKELEVANVRELEDFL 133 (227)
Q Consensus 112 isy~~I~~~L~i~~~~eVE~lv 133 (227)
.++.+|++.++|+ ...|-.|+
T Consensus 22 ~s~~~ia~~lgvs-~~Tv~r~l 42 (52)
T 1jko_C 22 HPRQQLAIIFGIG-VSTLYRYF 42 (52)
T ss_dssp CCHHHHHHTTSCC-HHHHHHHS
T ss_pred CCHHHHHHHHCCC-HHHHHHHH
Confidence 8999999999998 77776653
No 179
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=24.29 E-value=2.1e+02 Score=20.99 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=21.6
Q ss_pred ccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE
Q 044757 112 LSYDQLLKELEVANVRELEDFLINECMYVGIVKG 145 (227)
Q Consensus 112 isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g 145 (227)
++..++|+.+||+ ...+-.| - + .||+..
T Consensus 1 ~~I~e~A~~~gvs-~~tLR~y-e-~---~Gll~p 28 (135)
T 1q06_A 1 MNISDVAKITGLT-SKAIRFY-E-E---KGLVTP 28 (135)
T ss_dssp CCHHHHHHHHTCC-HHHHHHH-H-H---TTCSCC
T ss_pred CCHHHHHHHHCcC-HHHHHHH-H-H---CCCCCC
Confidence 3678999999999 8888877 2 2 588764
No 180
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=24.21 E-value=96 Score=29.12 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=39.9
Q ss_pred HHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHh-----cCceEEEecccCcEEEEE
Q 044757 99 QLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMY-----VGIVKGKLNQLRRCFEVQ 157 (227)
Q Consensus 99 ~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~-----~gLI~gkIDQ~~~~v~V~ 157 (227)
.+.++.++..+..++-.++++.++++ ..++...+= +... .|+|++. .++.+++
T Consensus 432 ~~~iL~~l~~~~~it~~~la~~l~~s-~~~~~~~L~-~L~~~~~~~~glie~~----g~~y~L~ 489 (583)
T 3lmm_A 432 IAIVLYLLFQRPFITIDVVARGLQSG-KEAARNALE-AARQTTVAGAPLIIAH----DGVWLLG 489 (583)
T ss_dssp HHHHHHHHHHSSSBCHHHHHHHHTSC-HHHHHHHHH-HHHTCEETTEESEEEE----TTEEEEC
T ss_pred HHHHHHHHHHCCCcCHHHHHHHhCcC-HHHHHHHHH-HHHhhhccccceEEEe----CCEEEEC
Confidence 35566766678899999999999998 888988766 6655 5788874 3555554
No 181
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=24.14 E-value=66 Score=23.25 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=22.5
Q ss_pred cccHHHHHHHhCCCChhHHHHHHHHHhH
Q 044757 111 VLSYDQLLKELEVANVRELEDFLINECM 138 (227)
Q Consensus 111 ~isy~~I~~~L~i~~~~eVE~lvI~~ai 138 (227)
-.||.+||+.+|++ ...|...+- +|.
T Consensus 38 g~s~~EIA~~lgiS-~~tV~~~l~-ra~ 63 (113)
T 1s7o_A 38 DYSLAEIADEFGVS-RQAVYDNIK-RTE 63 (113)
T ss_dssp CCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 48999999999999 899998877 665
No 182
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=23.97 E-value=1.3e+02 Score=24.70 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCHhhHHhhhh-------cCCCcchHHHHHHHHHHhhhhhc
Q 044757 65 IDLLRLFAHGTWTDYKSNAA-------HLPQLVPDQAVKLKQLSVLTLAE 107 (227)
Q Consensus 65 ~~LL~iF~~G~~~dy~~~~~-------~~~~l~~~~~~Klr~LtLlsLa~ 107 (227)
+.++.+|..|.+.||.+..+ ....++..+.+++|..-.++=..
T Consensus 27 ~~~c~aFR~~r~~dFrq~rdi~eall~~~~~~~a~~~k~i~icQfL~RI~ 76 (211)
T 3bqo_A 27 LSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIA 76 (211)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHH
Confidence 45899999999999998653 23445566677777765555444
No 183
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=23.92 E-value=1.2e+02 Score=22.33 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=32.8
Q ss_pred cCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEE
Q 044757 108 MNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQ 157 (227)
Q Consensus 108 ~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~ 157 (227)
.+..++..+|++.++++ ...|=..+- ..-..|+|.-+=+ +.++++
T Consensus 51 ~~~~~~~~~la~~l~vs-~~tvs~~l~-~Le~~Glv~r~~~---~~~~lT 95 (155)
T 2h09_A 51 EVGEARQVDMAARLGVS-QPTVAKMLK-RLATMGLIEMIPW---RGVFLT 95 (155)
T ss_dssp HHSCCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTCEEEETT---TEEEEC
T ss_pred hCCCcCHHHHHHHhCcC-HHHHHHHHH-HHHHCCCEEEecC---CceEEC
Confidence 34568999999999998 777777666 7777899875532 445554
No 184
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=23.62 E-value=99 Score=21.27 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=27.9
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEec
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLN 148 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkID 148 (227)
+..++.+|++.++++ ...|=.-+= ..-.. +|..+-+
T Consensus 40 ~~~~~~ela~~l~is-~stvs~hL~-~L~~~-lv~~~~~ 75 (99)
T 2zkz_A 40 KALNVTQIIQILKLP-QSTVSQHLC-KMRGK-VLKRNRQ 75 (99)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHH-HHBTT-TBEEEEE
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHH-HHHHH-hhhheEe
Confidence 568999999999998 777776655 55556 8887655
No 185
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=23.14 E-value=1.7e+02 Score=19.43 Aligned_cols=34 Identities=18% Similarity=0.056 Sum_probs=28.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044757 164 LRHGQLENMMQSLTNWLDTSDNILSVIQDKIKWA 197 (227)
Q Consensus 164 ~~~~q~~~l~~~L~~W~~~~~~~l~~ie~~~~~~ 197 (227)
++++++.....++..-...+...+..|...+..+
T Consensus 6 v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L 39 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEI 39 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888899999999998888888877764
No 186
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=23.12 E-value=1.3e+02 Score=24.59 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=36.6
Q ss_pred HHHHhhhhh-ccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEE
Q 044757 98 KQLSVLTLA-EMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGK 146 (227)
Q Consensus 98 r~LtLlsLa-~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gk 146 (227)
|-+.++.+. .....++..+|++.++++ ...|-.++- .....|+|.-.
T Consensus 15 r~l~iL~~l~~~~~~~~~~eia~~~gl~-~stv~r~l~-~L~~~G~v~~~ 62 (257)
T 2g7u_A 15 RGFAVLLAFDAQRPNPTLAELATEAGLS-RPAVRRILL-TLQKLGYVAGS 62 (257)
T ss_dssp HHHHHHHTCSSSCSSCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeC
Confidence 345666544 345679999999999999 888988877 77889999863
No 187
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=22.85 E-value=71 Score=28.24 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=25.1
Q ss_pred HHhhhhhcc--CccccHHHHHHHhCCCChhHHHHHHH
Q 044757 100 LSVLTLAEM--NKVLSYDQLLKELEVANVRELEDFLI 134 (227)
Q Consensus 100 LtLlsLa~~--~~~isy~~I~~~L~i~~~~eVE~lvI 134 (227)
++++-+-+. ...+||++|++.++++ .+++..-+-
T Consensus 202 a~ILllFn~~~~~~lt~~ei~~~t~i~-~~~L~r~L~ 237 (382)
T 3dpl_C 202 LAVLFAWNQRPREKISFENLKLATELP-DAELRRTLW 237 (382)
T ss_dssp HHHHGGGTTCTTCCEEHHHHHHHHCCC-HHHHHHHHH
T ss_pred HHHHHHhccCCCCcCcHHHHHHHHCcC-HHHHHHHHH
Confidence 344444443 3689999999999999 788877655
No 188
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=22.54 E-value=1.1e+02 Score=25.05 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=36.2
Q ss_pred HHHHhhhhh-ccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE
Q 044757 98 KQLSVLTLA-EMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG 145 (227)
Q Consensus 98 r~LtLlsLa-~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g 145 (227)
|-+.++.+. .....++..+|++.++++ ...|-.++- .....|+|.-
T Consensus 22 r~l~iL~~l~~~~~~~~~~eia~~~gl~-~stv~r~l~-tL~~~G~v~~ 68 (265)
T 2ia2_A 22 RGLAVIRCFDHRNQRRTLSDVARATDLT-RATARRFLL-TLVELGYVAT 68 (265)
T ss_dssp HHHHHHHTCCSSCSSEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEe
Confidence 445666644 345679999999999999 888888877 6778899976
No 189
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=22.18 E-value=69 Score=23.76 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=20.1
Q ss_pred HHhhhhhccCccccHHHHHHHhCCC
Q 044757 100 LSVLTLAEMNKVLSYDQLLKELEVA 124 (227)
Q Consensus 100 LtLlsLa~~~~~isy~~I~~~L~i~ 124 (227)
...+.-+..+++.||.+||+.++.|
T Consensus 11 w~~l~~IP~G~v~TYg~IA~~~G~p 35 (116)
T 3gva_A 11 YDAVCEIPYGKVSTYGEIARYVGMP 35 (116)
T ss_dssp HHHHTTSCTTCBBCHHHHHHHTTCT
T ss_pred HHHHhcCCCCCeEeHHHHHHHhCCC
Confidence 4555555578999999999999986
No 190
>2hng_A Hypothetical protein; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE; 1.63A {Streptococcus pneumoniae} SCOP: d.33.1.2
Probab=21.64 E-value=79 Score=23.91 Aligned_cols=44 Identities=14% Similarity=0.239 Sum_probs=30.5
Q ss_pred ceEEEecccCcEEEEEeecCCCCCcchHHHHHHHHHHHHHHHHH
Q 044757 142 IVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDN 185 (227)
Q Consensus 142 LI~gkIDQ~~~~v~V~~~~~R~~~~~q~~~l~~~L~~W~~~~~~ 185 (227)
.|.|.|.|+.+..-=..-.|-+|..++|+.|..=|-...+++.-
T Consensus 68 viSG~IsQiv~i~dr~~~~~sd~~q~ev~~LsrPL~d~i~rLTY 111 (127)
T 2hng_A 68 VISGTISQVNHIDGRIVNEPSELNQEEVETLARPCLNMLNRLTY 111 (127)
T ss_dssp EEEEEEEEEEEEETCCCSSGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeeeeeeecccccCCcccCCHHHHHHHHHHHHHHHhhhee
Confidence 47899988665443223367788889999988887776666543
No 191
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.52 E-value=1.8e+02 Score=18.95 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=28.6
Q ss_pred ccccHHHHHHHh-----CCCChhHHHHHHHHHhHhcCceEEE
Q 044757 110 KVLSYDQLLKEL-----EVANVRELEDFLINECMYVGIVKGK 146 (227)
Q Consensus 110 ~~isy~~I~~~L-----~i~~~~eVE~lvI~~ai~~gLI~gk 146 (227)
+.++.++|++.+ +++ ...|=..+= .....|+|.-.
T Consensus 32 ~~~s~~el~~~l~~~~~~is-~~TVyR~L~-~L~~~Glv~~~ 71 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIG-LATVYRVLN-QFDDAGIVTRH 71 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCC-HHHHHHHHH-HHHHHTSEEEE
T ss_pred CCCCHHHHHHHHHHhCCCCC-HhhHHHHHH-HHHHCCCeEEE
Confidence 689999999999 898 778877666 66778999844
No 192
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.16 E-value=2.2e+02 Score=19.99 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=30.8
Q ss_pred EEeecCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 044757 156 VQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQDKIKWAETMCE 202 (227)
Q Consensus 156 V~~~~~R~~~~~q~~~l~~~L~~W~~~~~~~l~~ie~~~~~~~~~~~ 202 (227)
|.+..+++|=..........|..=.+.+...+..++.++........
T Consensus 55 vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~ 101 (117)
T 2zqm_A 55 VYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLK 101 (117)
T ss_dssp EEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556676666667777777777777777777777666666655544
No 193
>2o2a_A Hypothetical protein GBS1413; structural genomics, PSI-2, protei structure initiative; 2.10A {Streptococcus agalactiae} SCOP: d.33.1.2
Probab=21.12 E-value=83 Score=23.84 Aligned_cols=44 Identities=11% Similarity=0.234 Sum_probs=30.2
Q ss_pred ceEEEecccCcEEEEEeecCCCCCcchHHHHHHHHHHHHHHHHH
Q 044757 142 IVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDN 185 (227)
Q Consensus 142 LI~gkIDQ~~~~v~V~~~~~R~~~~~q~~~l~~~L~~W~~~~~~ 185 (227)
.|.|.|.|+.+..-=..-.|-+|..++|+.|..=|-...+++.-
T Consensus 67 viSG~IsQiv~i~~r~~~~~sd~~q~ev~~LsrPL~d~i~rLTY 110 (128)
T 2o2a_A 67 VISGVISQMAHIQGRLINEPSEFSQDEVENLAAPLLEIVKRLTY 110 (128)
T ss_dssp EEEEEEEEEEEEETCCCSCGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeeeeeeecccccCCcccCCHHHHHHHHHHHHHHHhhhee
Confidence 47788888665443223357788889999988877766665543
No 194
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=20.80 E-value=2.7e+02 Score=22.06 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=34.7
Q ss_pred cCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEE
Q 044757 108 MNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQ 157 (227)
Q Consensus 108 ~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~ 157 (227)
....+++.++|+.|+++ ...|=..|= +.-..||+.-.-|...+.+.+|
T Consensus 24 ~~~~~s~s~aA~~L~is-q~avSr~I~-~LE~~~L~~R~~~~R~~~v~LT 71 (230)
T 3cta_A 24 NRAYLTSSKLADMLGIS-QQSASRIII-DLEKNGYITRTVTKRGQILNIT 71 (230)
T ss_dssp SEEECCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEC
T ss_pred cCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEEEcCCeEEEEEC
Confidence 34678999999999998 666665554 5556889988777644445544
No 195
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=20.79 E-value=68 Score=23.45 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=19.8
Q ss_pred HHhhhhhccCccccHHHHHHHhCCC
Q 044757 100 LSVLTLAEMNKVLSYDQLLKELEVA 124 (227)
Q Consensus 100 LtLlsLa~~~~~isy~~I~~~L~i~ 124 (227)
...+.-+..+++.||.+||+.++.|
T Consensus 9 ~~~l~~IP~G~v~TYg~iA~~~G~p 33 (108)
T 2kif_A 9 FAVIHQIPKGKVSTYGEIAKMAGYP 33 (108)
T ss_dssp HHHHTTCCTTCBEEHHHHHHHHTCT
T ss_pred HHHHhcCCCCCcEeHHHHHHHhCCC
Confidence 4445555578899999999999986
No 196
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=20.24 E-value=1.5e+02 Score=25.26 Aligned_cols=44 Identities=5% Similarity=0.055 Sum_probs=35.2
Q ss_pred CccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEe
Q 044757 109 NKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQF 158 (227)
Q Consensus 109 ~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~ 158 (227)
.+.+|+++||+.++++ .+-+..|+= -+...|+++-. .+++..+.
T Consensus 48 ~~~~t~~eLA~~~g~~-~~~l~rlLr-~l~~~g~l~~~----~~~y~~t~ 91 (363)
T 3dp7_A 48 REGYTLQEISGRTGLT-RYAAQVLLE-ASLTIGTILLE----EDRYVLAK 91 (363)
T ss_dssp TTCBCHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEEE----TTEEEECH
T ss_pred CCCCCHHHHHHHhCcC-HHHHHHHHH-HHhhCCCeEec----CCEEeccc
Confidence 4689999999999998 888998877 67889999652 45665553
No 197
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=20.14 E-value=2e+02 Score=21.54 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=31.4
Q ss_pred ccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEE-EecccCcEEEEEeecCCCCCcchHH
Q 044757 110 KVLSYDQLLKELEVANVRELEDFLINECMYVGIVKG-KLNQLRRCFEVQFAAGRDLRHGQLE 170 (227)
Q Consensus 110 ~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~g-kIDQ~~~~v~V~~~~~R~~~~~q~~ 170 (227)
..++..++|+.+||+ ...+-.|-= .||+.- +-+..+ .|.++.+++.
T Consensus 3 ~~~tI~evA~~~Gvs-~~tLR~ye~-----~GLl~p~~r~~~g---------~R~Y~~~dl~ 49 (146)
T 3hh0_A 3 LAWLISEFASVGDVT-VRALRYYDK-----INLLKPSDYTEGG---------HRLYTKDDLY 49 (146)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-----TTSSCCSEECTTS---------CEEBCHHHHH
T ss_pred CCCcHHHHHHHHCcC-HHHHHHHHH-----CCCCCCCeECCCC---------CEeeCHHHHH
Confidence 357889999999999 888887732 488864 344433 3555555554
Done!