BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044763
         (453 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9HC84|MUC5B_HUMAN Mucin-5B OS=Homo sapiens GN=MUC5B PE=1 SV=3
          Length = 5762

 Score = 35.0 bits (79), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 15/29 (51%)

Query: 367 GLSFVVNKELAICSCGLWQLSKIPCPHTC 395
           G SF        CS GLWQ   +PCP TC
Sbjct: 397 GTSFNTTCSSCTCSGGLWQCQDLPCPGTC 425


>sp|Q6FVB6|CHO2_CANGA Phosphatidylethanolamine N-methyltransferase OS=Candida glabrata
           (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
           NRRL Y-65) GN=CHO2 PE=3 SV=1
          Length = 853

 Score = 32.7 bits (73), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 15/61 (24%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 49  NFALGTMWNAVNFLHL-WVENPNIDLDRLGYEIERCSGIKYPTWKVEAIDKIAKFWLRTD 107
           N ALG +W A NF+ + ++E P++     G   +R SG++   + ++ + ++++   + +
Sbjct: 509 NIALGMLWTATNFVLVKFIETPHVS-KVYGPSADRMSGVEKTLYNIKPLRRVSELVDKAE 567

Query: 108 H 108
           H
Sbjct: 568 H 568


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.137    0.458 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,398,440
Number of Sequences: 539616
Number of extensions: 7198830
Number of successful extensions: 16967
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16963
Number of HSP's gapped (non-prelim): 5
length of query: 453
length of database: 191,569,459
effective HSP length: 121
effective length of query: 332
effective length of database: 126,275,923
effective search space: 41923606436
effective search space used: 41923606436
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)