Query 044763
Match_columns 453
No_of_seqs 215 out of 1460
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 11:09:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 94.4 0.081 2.8E-06 38.6 5.6 41 6-46 34-74 (76)
2 1wj2_A Probable WRKY transcrip 94.3 0.11 3.7E-06 38.0 6.0 41 6-46 37-77 (78)
3 3hot_A Transposable element ma 58.8 79 0.0027 29.3 11.5 61 128-191 186-252 (345)
4 2l0z_A Glycoprotein G2; zinc-b 42.0 8.1 0.00028 24.0 0.8 16 376-391 21-36 (42)
5 3f2k_A Histone-lysine N-methyl 40.6 1.3E+02 0.0044 26.2 9.0 122 127-251 67-212 (226)
6 2bw3_A Transposase; DNA recomb 32.5 1E+02 0.0035 30.7 7.9 70 144-220 130-201 (534)
7 2f7t_A MOS1 transposase; RNAse 25.3 2.6E+02 0.0088 24.1 8.4 59 130-191 70-134 (227)
8 2kt5_B ICP27; chaperone, mRNA 20.6 37 0.0013 20.6 1.0 12 441-452 27-38 (40)
9 2fcj_A Small toprim domain pro 20.5 99 0.0034 24.3 3.9 42 165-212 41-85 (119)
10 2rpr_A Flywch-type zinc finger 15.9 86 0.0029 22.8 2.5 33 7-46 39-74 (87)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=94.42 E-value=0.081 Score=38.55 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=35.3
Q ss_pred eEEEEEeecCCCceEEEEEEeCCCceEEEEeeCCCceecCC
Q 044763 6 TLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCKRH 46 (453)
Q Consensus 6 ~r~~~~C~~~~C~w~v~~~~~~~~~~~~i~~~~~~H~c~~~ 46 (453)
.|--.+|+..|||++=.+.+..++....+.++.++|||..+
T Consensus 34 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 74 (76)
T 2ayd_A 34 PRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74 (76)
T ss_dssp CEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred ceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence 45558999999999999999877777888999999999864
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=94.27 E-value=0.11 Score=38.04 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=35.1
Q ss_pred eEEEEEeecCCCceEEEEEEeCCCceEEEEeeCCCceecCC
Q 044763 6 TLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCKRH 46 (453)
Q Consensus 6 ~r~~~~C~~~~C~w~v~~~~~~~~~~~~i~~~~~~H~c~~~ 46 (453)
.|--.+|+..||+++=.+.+..++....+.++.++|||..+
T Consensus 37 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 37 PRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp CEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred eeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 45568999999999999999877777888899999999764
No 3
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=58.81 E-value=79 Score=29.34 Aligned_cols=61 Identities=15% Similarity=0.136 Sum_probs=39.3
Q ss_pred cCCceeEEEEEEcCCCCeEEEEEEeee---ccccccHHHHHHHHHhhccccc-cC--CCCCEEEEcCCCc
Q 044763 128 SYKSVMLVAVCRDGNNGVLPIAFCEVQ---EENLDLWSFFLKNLYEGLHMDY-MD--YGKGICIMCDKDN 191 (453)
Q Consensus 128 ~y~~~ll~a~g~d~~~~~~~la~a~~~---~E~~~~w~wfl~~l~~~~~~~~-~~--~~~~~~iisD~~~ 191 (453)
.+.+.+++..+.+.+| ++++.+++ +-+.+.|.-+|+.+...+.... .. ...+.++++|...
T Consensus 186 ~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~ 252 (345)
T 3hot_A 186 RFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP 252 (345)
T ss_dssp TTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred CcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence 3456778888888887 57777776 4567778888877655432100 00 0246789999865
No 4
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=42.05 E-value=8.1 Score=24.00 Aligned_cols=16 Identities=38% Similarity=0.715 Sum_probs=13.5
Q ss_pred CCceeeCCeecCCCCc
Q 044763 376 LAICSCGLWQLSKIPC 391 (453)
Q Consensus 376 ~~~CsC~~~~~~giPC 391 (453)
...|+|+.|...|.|=
T Consensus 21 ~~~C~CG~y~~~~kp~ 36 (42)
T 2l0z_A 21 LGGCRCGKYPNLKKPT 36 (42)
T ss_dssp TSSBTTTTBCCCCCCC
T ss_pred CceeccccccCCCCcc
Confidence 4689999999998773
No 5
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A
Probab=40.63 E-value=1.3e+02 Score=26.24 Aligned_cols=122 Identities=11% Similarity=0.069 Sum_probs=65.9
Q ss_pred ccCCceeEEEEEEcCCCCeEEEEEEeee---ccccccHHHHHHHHHhhccccc--cCCCCCEEEEcCCCc-----hHHHH
Q 044763 127 SSYKSVMLVAVCRDGNNGVLPIAFCEVQ---EENLDLWSFFLKNLYEGLHMDY--MDYGKGICIMCDKDN-----GVDEA 196 (453)
Q Consensus 127 ~~y~~~ll~a~g~d~~~~~~~la~a~~~---~E~~~~w~wfl~~l~~~~~~~~--~~~~~~~~iisD~~~-----~l~~A 196 (453)
..+.+.+++.+|.+++|.+ ++.+++ +=|.+.|.-+|+.+...+.... .....+.+++.|..+ .+...
T Consensus 67 ~~~~~~vmv~~~~s~~G~~---~~~~l~~~~tinse~Y~~~l~~l~~~l~~~~~~~~~~~~~i~~~Dna~~H~~~~~~~~ 143 (226)
T 3f2k_A 67 ILHPKKVMVTIWWSAAGLI---HYSFLNPGETITSEKYAQEIDEMNQKLQRLQLALVNRKGPILLHDNARPHVAQPTLQK 143 (226)
T ss_dssp --CCCEEEEEEEEETTEEE---EEEECCTTCCCSHHHHHHHHHHHHHHHHHHTC----CCCCEEECCCCHHHHSTTHHHH
T ss_pred ccCCcceEEEEEeecCCcE---EEEEecCCcccCHHHHHHHHHHHHHHHhhhhhHhhccCCcEEEeCCCccchhhhHHHH
Confidence 4556788999999998855 445554 4566778777776543321100 001456788899865 23333
Q ss_pred Hhhc----c---CCCceeccHH-HHHHHHHhhCCC------hhHHHHHHHHhhhhcHHHHHHHHHHHHh
Q 044763 197 ASEF----L---PYAQYRQCCF-SINNKLMEQFPH------ALVYSLFWSACRSTNKATFQQQMMLLQY 251 (453)
Q Consensus 197 i~~v----f---P~a~h~~C~~-Hi~~n~~~~~~~------~~~~~~~~~~~~~~~~~ef~~~~~~l~~ 251 (453)
+.+. + |.+.-.--.- |+.+.+++.+.+ .++.+.+.+...+.+.+.+....+.|..
T Consensus 144 l~~~~~~~~~~P~ySPdlnpie~~~w~~lk~~l~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~ 212 (226)
T 3f2k_A 144 LNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQGKRFHNQQDAENAFQEFVESQSTDFYATGINQLIS 212 (226)
T ss_dssp HHHHTCEECCCCTTCGGGCHHHHTHHHHHHHHHTTCBCSSHHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred HHhhcceeecCCCCCCCcchHHHHHHHHHHHHHHhcCCccHHHHHHHHHhHHhhcCcHHHHHHHHHHHH
Confidence 3332 1 3343333333 555555554432 2455555555556666666666665543
No 6
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Probab=32.48 E-value=1e+02 Score=30.69 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=47.6
Q ss_pred CeEEEEEEeeec--cccccHHHHHHHHHhhccccccCCCCCEEEEcCCCchHHHHHhhccCCCceeccHHHHHHHHHhh
Q 044763 144 GVLPIAFCEVQE--ENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAASEFLPYAQYRQCCFSINNKLMEQ 220 (453)
Q Consensus 144 ~~~~la~a~~~~--E~~~~w~wfl~~l~~~~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~ 220 (453)
+..+|++.-++. .+.++..-.+....+..+. .......++||....+..|++.. .|..|..|...-+.+.
T Consensus 130 ~~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l---~~~~~v~~vtDnasn~~~~~~~~----~~i~C~~H~lnLi~~~ 201 (534)
T 2bw3_A 130 RDLILGLKSLDFERSTAENIYKKLKAIFSQFNV---EDLSSIKFVTDRGANVVKSLANN----IRINCSSHLLSNVLEN 201 (534)
T ss_dssp EEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTC---CCCTTCEEEECCCHHHHHHTTTS----EEEECHHHHHHHHHHH
T ss_pred EEEEEeEeecCCCCCCHHHHHHHHHHHHHHcCC---CcccceeEECCCHHHHHHHHhcC----cccccHHHHHHHHHHH
Confidence 445777776764 4555555555555555554 11236778999999998888753 6899999998877653
No 7
>2f7t_A MOS1 transposase; RNAse-H like fold, DDD motif, DNA binding protein; 2.25A {Drosophila mauritiana}
Probab=25.32 E-value=2.6e+02 Score=24.07 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=32.7
Q ss_pred CceeEEEEEEcCCCCeEEEEEEeee---ccccccHHHHHHHHHhhccccc--cCCCCC-EEEEcCCCc
Q 044763 130 KSVMLVAVCRDGNNGVLPIAFCEVQ---EENLDLWSFFLKNLYEGLHMDY--MDYGKG-ICIMCDKDN 191 (453)
Q Consensus 130 ~~~ll~a~g~d~~~~~~~la~a~~~---~E~~~~w~wfl~~l~~~~~~~~--~~~~~~-~~iisD~~~ 191 (453)
.+.+++..+++.+|. +++.+++ +=|.+.|.-+|+.+...+.... .....+ .+++-|..+
T Consensus 70 ~~~vmv~g~~~~~G~---~~~~~~~~~~~in~~~y~~~L~~l~~~~~~~~p~~~~~~~~~~~~~Dna~ 134 (227)
T 2f7t_A 70 GKKTMLCVWWDQSGV---IYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP 134 (227)
T ss_dssp --EEEEEEEEETTEE---EEEEECCTTCCCCHHHHHHHHHHHHHHHHHHCHHHHTTSSCCEEECCCCG
T ss_pred cCeeEEEEEEecCce---EEeEecCCCceecHHHHHHHHHHHHHHHHHhChHhhccCCceEEEECCCc
Confidence 455677677777663 4455563 3455778877876654432100 001234 788999875
No 8
>2kt5_B ICP27; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Human herpesvirus 1}
Probab=20.58 E-value=37 Score=20.60 Aligned_cols=12 Identities=33% Similarity=0.390 Sum_probs=9.9
Q ss_pred CccCCCCccccC
Q 044763 441 DIVQPPLKIATH 452 (453)
Q Consensus 441 ~~~~pp~~~~~~ 452 (453)
..++|||+++.|
T Consensus 27 AR~qpp~tka~~ 38 (40)
T 2kt5_B 27 ARLQPPPTKAQP 38 (40)
T ss_dssp CCCCCCCCCCSC
T ss_pred eeecCCCcCCCC
Confidence 449999999876
No 9
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=20.46 E-value=99 Score=24.31 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=31.6
Q ss_pred HHHHHhhccccccCCCCCEEEEcCCCc---hHHHHHhhccCCCceeccHHH
Q 044763 165 LKNLYEGLHMDYMDYGKGICIMCDKDN---GVDEAASEFLPYAQYRQCCFS 212 (453)
Q Consensus 165 l~~l~~~~~~~~~~~~~~~~iisD~~~---~l~~Ai~~vfP~a~h~~C~~H 212 (453)
++.++.... ...+.|+||.|. -|.+-|.+.||++.|.+-...
T Consensus 41 l~~I~~~~~------~r~VIi~TD~D~~GekIRk~i~~~lp~~~hafi~r~ 85 (119)
T 2fcj_A 41 LEELADELE------GYDVYLLADADEAGEKLRRQFRRMFPEAEHLYIDRA 85 (119)
T ss_dssp HHHHHHHTT------TSEEEEECCSSHHHHHHHHHHHHHCTTSEEECCCTT
T ss_pred HHHHHHHhc------CCCEEEEECCCccHHHHHHHHHHHCCCCcEEeccCC
Confidence 445555532 578999999997 477788899999998876554
No 10
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=15.91 E-value=86 Score=22.83 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=21.9
Q ss_pred EEEEEeec---CCCceEEEEEEeCCCceEEEEeeCCCceecCC
Q 044763 7 LISCECSD---LMCDWKVSAAKVRKGNVFVLKEITPNHTCKRH 46 (453)
Q Consensus 7 r~~~~C~~---~~C~w~v~~~~~~~~~~~~i~~~~~~H~c~~~ 46 (453)
+.--+|.. .+|++++.... ++ +. ....|||++.
T Consensus 39 ~~yWrC~~~~~~kCrARi~T~~---~~---~~-~~~~HnH~p~ 74 (87)
T 2rpr_A 39 KVYWMCRDQARLGCRSRAITQG---HR---IM-VMRSHCHQPD 74 (87)
T ss_dssp CEEEEEGGGTTSCCCCEEEEET---TE---EE-ECSCCSSCCC
T ss_pred cEEEEecCCCCCCCCEEEEEcC---CC---EE-CCCCcCCCCc
Confidence 34467886 48999987643 22 22 4678999764
Done!