Query 044764
Match_columns 186
No_of_seqs 103 out of 441
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 06:33:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01569 A_tha_TIGR01569 plan 100.0 5.9E-46 1.3E-50 294.0 18.0 154 30-183 1-154 (154)
2 PF04535 DUF588: Domain of unk 100.0 8.6E-40 1.9E-44 256.8 16.3 147 23-171 1-149 (149)
3 PF01284 MARVEL: Membrane-asso 98.7 7.4E-07 1.6E-11 67.8 12.8 141 26-177 3-143 (144)
4 KOG4016 Synaptic vesicle prote 52.0 1.5E+02 0.0032 25.1 13.9 168 1-182 1-169 (233)
5 PF07584 BatA: Aerotolerance r 24.5 87 0.0019 21.3 2.8 24 22-45 52-75 (77)
6 PF03954 Lectin_N: Hepatic lec 20.5 68 0.0015 25.1 1.7 45 5-49 10-55 (138)
7 PF06376 DUF1070: Protein of u 20.3 1.2E+02 0.0026 18.0 2.4 15 112-126 13-27 (34)
8 PF03842 Silic_transp: Silicon 20.0 7.3E+02 0.016 23.3 8.4 81 9-97 205-286 (512)
9 KOG2662 Magnesium transporters 18.0 6.2E+02 0.013 23.4 7.5 57 25-92 345-403 (414)
10 PF09955 DUF2189: Predicted in 17.5 4.5E+02 0.0098 19.8 6.3 32 66-97 91-122 (128)
No 1
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=100.00 E-value=5.9e-46 Score=294.00 Aligned_cols=154 Identities=42% Similarity=0.745 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccceeccccceeeeeeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhH
Q 044764 30 LILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRIL 109 (186)
Q Consensus 30 l~LR~~a~~~slaa~~vM~t~~q~~~~~~~~~~~~~~f~~~~af~ylv~an~i~~~Ysllql~~~~~~~~~~~~~~~~~~ 109 (186)
++||+++++++++|+++|+||+|+.+++++.+++++||+|+++|+|+|++|+|+|+|+++|++++++++.+++....+|+
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~~~~~~ 80 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVFFKLIA 80 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 46999999999999999999999998776557889999999999999999999999999999999998877766656799
Q ss_pred HHhHHHHHHHHHHHhhhhHHHHHHHHHhCCCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044764 110 LLVFDLVMLTLVTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVAL 183 (186)
Q Consensus 110 ~f~~Dqv~ayLl~saasAA~~v~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsfla~~~~~~~s~lS~~~L 183 (186)
+|++||+++||++||++||+++++++|+||+|.+|+|+|+++++||||+.+|++++|+|++++++++++|++++
T Consensus 81 ~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~~~ 154 (154)
T TIGR01569 81 LFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAISL 154 (154)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=100.00 E-value=8.6e-40 Score=256.79 Aligned_cols=147 Identities=35% Similarity=0.612 Sum_probs=136.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccccceeccccceeeeeeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 044764 23 KGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTA 102 (186)
Q Consensus 23 ~~~~~~~l~LR~~a~~~slaa~~vM~t~~q~~~~~~~~~~~~~~f~~~~af~ylv~an~i~~~Ysllql~~~~~~~~~~~ 102 (186)
|+.+..+++||+++++++++|+++|++|+|+.++.. .+.+++|+|+++|+|++++|+|+|+|+++|++.+++.+.+++
T Consensus 1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~--~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~ 78 (149)
T PF04535_consen 1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFS--IQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGK 78 (149)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeec--cccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 456889999999999999999999999999987653 678999999999999999999999999999999999887654
Q ss_pred --ccchhhHHHhHHHHHHHHHHHhhhhHHHHHHHHHhCCCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 044764 103 --AKKSRILLLVFDLVMLTLVTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVT 171 (186)
Q Consensus 103 --~~~~~~~~f~~Dqv~ayLl~saasAA~~v~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsfla~~~ 171 (186)
.+...|++|++||+++||++||++||+++++++++||++.+|+++|+.+++||+|+++|++++|+|+++
T Consensus 79 ~~~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 79 LRSKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA 149 (149)
T ss_pred CcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence 234568999999999999999999999999999999999999999999999999999999999999874
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=98.67 E-value=7.4e-07 Score=67.77 Aligned_cols=141 Identities=16% Similarity=0.040 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccceeccccceeeeeeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 044764 26 SILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKK 105 (186)
Q Consensus 26 ~~~~l~LR~~a~~~slaa~~vM~t~~q~~~~~~~~~~~~~~f~~~~af~ylv~an~i~~~Ysllql~~~~~~~~~~~~~~ 105 (186)
+....+||+++++++++.+.+++....+.. .......++..|.+.+.++...+++.-++...+...+.....
T Consensus 3 ~s~~~ilR~lq~~~~~i~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 74 (144)
T PF01284_consen 3 RSPSGILRILQLVFALIIFGLVASSIATGS--------QIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFSLKYRPRIP 74 (144)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHhccc--------cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 345689999999999999999998764221 123456678899999999999999988888776521122233
Q ss_pred hhhHHHhHHHHHHHHHHHhhhhHHHHHHHHHhCCCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 044764 106 SRILLLVFDLVMLTLVTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIV 177 (186)
Q Consensus 106 ~~~~~f~~Dqv~ayLl~saasAA~~v~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsfla~~~~~~~s~ 177 (186)
+.+.+++.|.+++.+-+.+..+-+.-..-.+.+++ +...+...++-|+...++.+++|+.++++..+.+
T Consensus 75 ~~~~~~~~~~v~~il~l~a~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~ 143 (144)
T PF01284_consen 75 WPLVEFIFDAVFAILWLAAFIALAAYLSDHSCSNT---GNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAV 143 (144)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCcccccC---CCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999998876654332211111111 2233344456799999999999999999988765
No 4
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.04 E-value=1.5e+02 Score=25.11 Aligned_cols=168 Identities=12% Similarity=-0.029 Sum_probs=88.6
Q ss_pred CCCcccccCCCCcCcccchhhhchhhHHHHHHHHHHHHHHHHHHHHHHhccccceeccccceeeeeeccchhHHHHHHHH
Q 044764 1 MQQPEHEAGEASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIAN 80 (186)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~LR~~a~~~slaa~~vM~t~~q~~~~~~~~~~~~~~f~~~~af~ylv~an 80 (186)
|.||.--.||+...=-|. +=++.-..++|++..+|+++-..-+.+.-=..+.-. .-++=.-=.|..+.+|=+++.
T Consensus 1 m~~~ayGagkAGaafD~~----tF~rkP~ti~R~~~~lFsliVf~si~~eGy~n~~~~-~~~~Ciynrn~~ACsyg~avG 75 (233)
T KOG4016|consen 1 MEGGAYGAGKAGAAFDPV----TFLRKPQTILRVVSWLFSLIVFGSIVNEGYLNSASS-GEEFCIYNRNSNACSYGVAVG 75 (233)
T ss_pred CCcccccccccccccChH----HHhcCchhHHHHHHHHHHHhheeeeccccccCcccC-CceEEEECCCCcchhHHHHHH
Confidence 444444445544333232 224566789999999999887765554321110000 001112235778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCccchhhHHHhHHHHHHHHHHHhhhhHHHHHHHHHhCCCCcchhhhh-hhhhhhhHHHH
Q 044764 81 SIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTLVTAGASSATAIVYLAHKGNTSANWFAFC-QLFDSFCERIS 159 (186)
Q Consensus 81 ~i~~~Ysllql~~~~~~~~~~~~~~~~~~~f~~Dqv~ayLl~saasAA~~v~~l~~~G~~~~~W~~vC-~~~~~FC~~~~ 159 (186)
+.+++=+++-++++.+--...+ .+.|--..+.|.++..|-.--= =.+-.++.. ||..-- ..+.-=-+.+.
T Consensus 76 ~~Afla~~~flvlD~~f~qISs-v~~RkraVl~Dl~~Salwtflw--fvGFc~l~n------qwqvs~p~~~~~~a~sar 146 (233)
T KOG4016|consen 76 VLAFLACLAFLVLDVYFPQISS-VKDRKRAVLADLGVSALWAFLW--FVGFCFLAN------QWQVSKPKENPLGAGSAR 146 (233)
T ss_pred HHHHHHHHHHHHHHhhhhhhcc-cchhHHHHHHHHHHHHHHHHHH--HHHHHHHHH------HhhccCCCCCCcCcchHH
Confidence 9999999988888876311111 1111112345554433321000 012223322 342110 01111134788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 044764 160 GSLIGSFAAAVTLMLVIVTSAVA 182 (186)
Q Consensus 160 ~Si~lsfla~~~~~~~s~lS~~~ 182 (186)
++|+.+|++.+.-...+++.-.|
T Consensus 147 aaIafsffSilsW~~~A~lA~qR 169 (233)
T KOG4016|consen 147 AAIAFSFFSILSWGGQAVLAFQR 169 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999988888877775443
No 5
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=24.46 E-value=87 Score=21.29 Aligned_cols=24 Identities=25% Similarity=0.063 Sum_probs=19.0
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHH
Q 044764 22 NKGISILDLILRTIAAAGTFGSAI 45 (186)
Q Consensus 22 ~~~~~~~~l~LR~~a~~~slaa~~ 45 (186)
+|..+...++||++++++.+++++
T Consensus 52 ~~~~~~l~l~L~lLal~lli~AlA 75 (77)
T PF07584_consen 52 RRLRRHLLLLLRLLALALLILALA 75 (77)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHc
Confidence 445677889999999998888763
No 6
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=20.51 E-value=68 Score=25.12 Aligned_cols=45 Identities=9% Similarity=-0.048 Sum_probs=19.4
Q ss_pred ccccCCCCcCcccchhhhchhhHHHHHHHHHHH-HHHHHHHHHHHh
Q 044764 5 EHEAGEASRDEISTHEMNKGISILDLILRTIAA-AGTFGSAIAMAT 49 (186)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~l~LR~~a~-~~slaa~~vM~t 49 (186)
+-|++-...+|||.+-..|--....+.|=.+.+ ++.++.+.|+++
T Consensus 10 ~~~~~~~~g~pppq~~lqrlcs~~~l~LlsLgl~~LLLV~IcVigs 55 (138)
T PF03954_consen 10 RREQQFRKGPPPPQSLLQRLCSGPRLLLLSLGLSLLLLVVICVIGS 55 (138)
T ss_pred cccccccCCCCCChHHHHHHcccchHHHHHHHHHHHHHHHHHhhcC
Confidence 334444444555544333432333333322222 333556666665
No 7
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=20.35 E-value=1.2e+02 Score=18.05 Aligned_cols=15 Identities=13% Similarity=0.005 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHhhh
Q 044764 112 VFDLVMLTLVTAGAS 126 (186)
Q Consensus 112 ~~Dqv~ayLl~saas 126 (186)
..||.++|+|+-++-
T Consensus 13 aiDqgiay~Lm~~Al 27 (34)
T PF06376_consen 13 AIDQGIAYMLMLVAL 27 (34)
T ss_pred hhhHHHHHHHHHHHH
Confidence 569999999986543
No 8
>PF03842 Silic_transp: Silicon transporter; InterPro: IPR004693 Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterised member of the family (Sit1) functions in the energy-dependent uptake of either silicic acid [Si(OH)4] or silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms, which make their "glass houses" out of silicon.
Probab=19.97 E-value=7.3e+02 Score=23.26 Aligned_cols=81 Identities=9% Similarity=0.032 Sum_probs=48.6
Q ss_pred CC-CCcCcccchhhhchhhHHHHHHHHHHHHHHHHHHHHHHhccccceeccccceeeeeeccchhHHHHHHHHHHHHHHH
Q 044764 9 GE-ASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIANSIVCGYL 87 (186)
Q Consensus 9 ~~-~~~~~~~~~~~~~~~~~~~l~LR~~a~~~slaa~~vM~t~~q~~~~~~~~~~~~~~f~~~~af~ylv~an~i~~~Ys 87 (186)
|| -+..++||.+....+-...++.-+..+.++++-...-..|-+|.-+.+ +| .-..-+.|++. +.|+-.-.
T Consensus 205 GKPI~SNE~Prtg~~~~FFWgRvlmSl~ILgF~lAVtl~ALf~G~Ttmw~g--vp-----~~vsV~lff~~-M~vVGmLE 276 (512)
T PF03842_consen 205 GKPIESNEPPRTGFQFAFFWGRVLMSLAILGFCLAVTLVALFNGKTTMWPG--VP-----PGVSVILFFFF-MSVVGMLE 276 (512)
T ss_pred CCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceecCC--CC-----cchHHHHHHHH-HHHHHHHh
Confidence 55 344456676677777778888888888888888777777777643222 11 11223344444 44444556
Q ss_pred HHHHHHHHHH
Q 044764 88 AISVPLSIFH 97 (186)
Q Consensus 88 llql~~~~~~ 97 (186)
-.|+.+-.+.
T Consensus 277 gMQIAfFava 286 (512)
T PF03842_consen 277 GMQIAFFAVA 286 (512)
T ss_pred hhHhhhhhhh
Confidence 6777764443
No 9
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=18.04 E-value=6.2e+02 Score=23.42 Aligned_cols=57 Identities=21% Similarity=0.170 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH--hccccceeccccceeeeeeccchhHHHHHHHHHHHHHHHHHHHH
Q 044764 25 ISILDLILRTIAAAGTFGSAIAMA--TTNETLTVFPQFTQVRAEYDDHPSFKFFVIANSIVCGYLAISVP 92 (186)
Q Consensus 25 ~~~~~l~LR~~a~~~slaa~~vM~--t~~q~~~~~~~~~~~~~~f~~~~af~ylv~an~i~~~Ysllql~ 92 (186)
+.-.++.|=..++.+++.+++.-. .|=+.. =+++-..|.|++...++.|++-+.-+.
T Consensus 345 LiqleL~Lt~gT~~~s~~~~va~ifGMNl~~~-----------l~~~~~~F~~vv~~~~~~~~~lf~~i~ 403 (414)
T KOG2662|consen 345 LIQLELLLTIGTFCLSVFSVVAGIFGMNLPSS-----------LEEDHYAFKWVVGITFTLCIVLFVVIL 403 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccch-----------hccCCChhhhhHHHHHHHHHHHHHHHH
Confidence 455666666667666666654332 232221 255668999999999999998877643
No 10
>PF09955 DUF2189: Predicted integral membrane protein (DUF2189); InterPro: IPR018692 This family includes several hypothetical prokaryotic proteins. Some are described as putative cytochrome c oxidases.
Probab=17.48 E-value=4.5e+02 Score=19.78 Aligned_cols=32 Identities=13% Similarity=0.271 Sum_probs=26.9
Q ss_pred eeccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044764 66 EYDDHPSFKFFVIANSIVCGYLAISVPLSIFH 97 (186)
Q Consensus 66 ~f~~~~af~ylv~an~i~~~Ysllql~~~~~~ 97 (186)
.+.+-....+++..++++.+.+.+....++++
T Consensus 91 ~~~t~~g~~~li~~~~vG~v~A~i~f~isvvs 122 (128)
T PF09955_consen 91 VFFTPRGWGFLIVGTLVGGVFAAIVFAISVVS 122 (128)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788899999999999999988887775
Done!