Query 044764
Match_columns 186
No_of_seqs 103 out of 441
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 11:11:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d85_C IL-23 subunit, interleu 16.6 1.5E+02 0.005 22.5 3.8 41 3-44 117-159 (178)
2 1j8c_A Ubiquitin-like protein 13.8 59 0.002 23.2 1.0 14 6-19 2-15 (125)
3 1rij_A E6APN1 peptide; Trp-CAG 9.5 94 0.0032 16.2 0.6 12 6-17 10-23 (26)
4 1v54_J Cytochrome C oxidase po 8.1 3.9E+02 0.013 16.7 3.3 28 67-94 26-53 (59)
5 1jb0_X Photosystem I subunit P 6.4 3.1E+02 0.011 15.5 1.9 15 74-88 17-31 (35)
6 1eci_A Ectatomin; pore-forming 6.3 1.7E+02 0.0058 16.5 0.8 20 143-162 7-26 (37)
7 2yfv_C SCM3, KLLA0F05115P; cel 6.0 1.3E+02 0.0046 19.3 0.2 16 142-157 36-51 (63)
8 2lg4_A Aurelin; antimicrobial 8.1 1.2E+02 0.0042 17.7 0.0 14 145-158 9-22 (40)
9 2y69_J Cytochrome C oxidase po 5.3 4.2E+02 0.014 17.7 2.5 29 66-94 46-74 (80)
10 1emz_A Envelope glycoprotein E 4.6 2.2E+02 0.0074 15.1 0.5 15 130-148 9-23 (26)
No 1
>3d85_C IL-23 subunit, interleukin-23 subunit P19; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} PDB: 3d87_A* 3qwr_B* 3duh_C*
Probab=16.61 E-value=1.5e+02 Score=22.46 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=15.6
Q ss_pred CcccccCCCCcCcccch--hhhchhhHHHHHHHHHHHHHHHHHH
Q 044764 3 QPEHEAGEASRDEISTH--EMNKGISILDLILRTIAAAGTFGSA 44 (186)
Q Consensus 3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~LR~~a~~~slaa~ 44 (186)
+++..+++.++.|++++ .|.|-+-.. -+||-++...++++=
T Consensus 117 Qpe~hhwet~q~Ps~~psq~wqr~llr~-kilrslqafvavaar 159 (178)
T 3d85_C 117 QPEGHHWETQQIPSLSPSQPWQRLLLRF-KILRSLQAFVAVAAR 159 (178)
T ss_dssp CC------------CCCCCHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCCCCCcccccCCCCCCcchHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45556677888888654 466654333 356777655555543
No 2
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=13.76 E-value=59 Score=23.24 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=10.9
Q ss_pred cccCCCCcCcccch
Q 044764 6 HEAGEASRDEISTH 19 (186)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (186)
-|.|+.|.||+|+.
T Consensus 2 ~~~~~~~~~~~~~~ 15 (125)
T 1j8c_A 2 AENGESSGPPRPSR 15 (125)
T ss_dssp CCSCCCCCCCSSCC
T ss_pred CccCcCCCCCChhh
Confidence 37899998888764
No 3
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=9.51 E-value=94 Score=16.18 Aligned_cols=12 Identities=25% Similarity=0.263 Sum_probs=5.9
Q ss_pred cccCC--CCcCccc
Q 044764 6 HEAGE--ASRDEIS 17 (186)
Q Consensus 6 ~~~~~--~~~~~~~ 17 (186)
+.||. +.+|||+
T Consensus 10 lkdggpssgrppps 23 (26)
T 1rij_A 10 LKDGGPSSGRPPPS 23 (26)
T ss_dssp HHTTGGGSSSCCCC
T ss_pred HHcCCCCCCCCCCC
Confidence 45665 3444443
No 4
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=8.12 E-value=3.9e+02 Score=16.70 Aligned_cols=28 Identities=7% Similarity=-0.088 Sum_probs=22.1
Q ss_pred eccchhHHHHHHHHHHHHHHHHHHHHHH
Q 044764 67 YDDHPSFKFFVIANSIVCGYLAISVPLS 94 (186)
Q Consensus 67 f~~~~af~ylv~an~i~~~Ysllql~~~ 94 (186)
=+|.--|.+.++..+++.+|++-.+...
T Consensus 26 ~sd~~Ly~~t~~l~~~g~~~~~y~l~~~ 53 (59)
T 1v54_J 26 ATDNILYRVTMTLCLGGTLYSLYCLGWA 53 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888999999999998877653
No 5
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=6.37 E-value=3.1e+02 Score=15.48 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHH
Q 044764 74 KFFVIANSIVCGYLA 88 (186)
Q Consensus 74 ~ylv~an~i~~~Ysl 88 (186)
..++++|-++++|=+
T Consensus 17 lllLaINflVAayYF 31 (35)
T 1jb0_X 17 VLLLAINFLVAAYYF 31 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 367889999888843
No 6
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=6.29 E-value=1.7e+02 Score=16.52 Aligned_cols=20 Identities=20% Similarity=0.674 Sum_probs=11.4
Q ss_pred chhhhhhhhhhhhHHHHHHH
Q 044764 143 NWFAFCQLFDSFCERISGSL 162 (186)
Q Consensus 143 ~W~~vC~~~~~FC~~~~~Si 162 (186)
.|..+|......-.+-.+++
T Consensus 7 iweticpt~~~~akkc~g~i 26 (37)
T 1eci_A 7 IWETVCPTVEPWAKKCSGDI 26 (37)
T ss_dssp HHHHHHHHHHHHHHTBCHHH
T ss_pred HHHHhCcchHHHHHHccchH
Confidence 48888876654443333443
No 7
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=5.97 E-value=1.3e+02 Score=19.35 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=12.7
Q ss_pred cchhhhhhhhhhhhHH
Q 044764 142 ANWFAFCQLFDSFCER 157 (186)
Q Consensus 142 ~~W~~vC~~~~~FC~~ 157 (186)
-.|..+|+.|++|-++
T Consensus 36 ~~w~~Ii~KY~~~edq 51 (63)
T 2yfv_C 36 RVWSQIIQKYESIDNQ 51 (63)
T ss_dssp HHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHHHhcccCC
Confidence 3599999999887665
No 8
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=8.06 E-value=1.2e+02 Score=17.75 Aligned_cols=14 Identities=36% Similarity=0.795 Sum_probs=11.0
Q ss_pred hhhhhhhhhhhHHH
Q 044764 145 FAFCQLFDSFCERI 158 (186)
Q Consensus 145 ~~vC~~~~~FC~~~ 158 (186)
+.+|.+|..||+..
T Consensus 9 ~h~C~~f~e~C~d~ 22 (40)
T 2lg4_A 9 GHICESFKSFCKDS 22 (40)
Confidence 35788889999876
No 9
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=5.35 E-value=4.2e+02 Score=17.71 Aligned_cols=29 Identities=7% Similarity=-0.094 Sum_probs=23.0
Q ss_pred eeccchhHHHHHHHHHHHHHHHHHHHHHH
Q 044764 66 EYDDHPSFKFFVIANSIVCGYLAISVPLS 94 (186)
Q Consensus 66 ~f~~~~af~ylv~an~i~~~Ysllql~~~ 94 (186)
.=+|.--|.+.++..+++.+|++-.+...
T Consensus 46 grsd~~Ly~~t~~l~~~G~~~~ly~l~~~ 74 (80)
T 2y69_J 46 GATDNILYRVTMTLCLGGTLYSLYCLGWA 74 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778999999999999998877653
No 10
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=4.61 E-value=2.2e+02 Score=15.14 Aligned_cols=15 Identities=33% Similarity=0.767 Sum_probs=8.0
Q ss_pred HHHHHHHhCCCCcchhhhh
Q 044764 130 AIVYLAHKGNTSANWFAFC 148 (186)
Q Consensus 130 ~v~~l~~~G~~~~~W~~vC 148 (186)
+++|.+..|| |-|++
T Consensus 9 glayfsm~gn----WaKVl 23 (26)
T 1emz_A 9 GIAYFSMVGN----WAKXX 23 (26)
T ss_dssp HHHHHHHHHH----HHC--
T ss_pred HHHHHHHhhH----Hhhhc
Confidence 4566666655 66665
Done!