Query 044764
Match_columns 186
No_of_seqs 103 out of 441
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 11:11:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044764.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044764hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0x_ f.23.20.1 (X:) Subunit 7.4 1.3E+02 0.0092 14.8 1.9 14 75-88 12-25 (29)
2 d3cjsb1 d.47.1.1 (B:1-70) Ribo 5.6 1.1E+02 0.0082 18.5 1.3 27 5-31 11-38 (70)
3 d1mmsa2 d.47.1.1 (A:8-70) Ribo 5.3 1.3E+02 0.0096 17.7 1.5 27 5-31 5-32 (63)
4 d2pn2a1 d.227.1.1 (A:1-132) Un 4.1 4.5E+02 0.033 16.2 4.0 35 19-55 34-68 (132)
5 d2np5a1 a.4.1.9 (A:9-77) Trans 3.5 3.1E+02 0.023 15.0 2.3 23 129-151 9-31 (69)
6 d2g3wa1 c.52.1.33 (A:4-182) Hy 3.4 2.6E+02 0.019 19.7 2.1 11 30-40 37-47 (179)
7 d1ppje2 f.23.12.1 (E:1-69) Iro 3.4 4.2E+02 0.031 15.5 2.9 18 113-130 31-48 (69)
8 d2ot9a1 c.52.1.33 (A:2-180) Hy 3.3 2.7E+02 0.02 19.6 2.1 11 30-40 39-49 (179)
9 d1rrza_ a.7.10.1 (A:) Glycogen 3.2 2.3E+02 0.017 16.6 1.4 14 147-160 45-58 (66)
10 d2i10a1 a.4.1.9 (A:10-78) Puta 2.8 4.5E+02 0.033 14.3 2.5 22 130-151 9-30 (69)
No 1
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=7.42 E-value=1.3e+02 Score=14.81 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHH
Q 044764 75 FFVIANSIVCGYLA 88 (186)
Q Consensus 75 ylv~an~i~~~Ysl 88 (186)
-++++|-+++.|-+
T Consensus 12 lllainflvaayyf 25 (29)
T d1jb0x_ 12 LLLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46778888888855
No 2
>d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=5.59 E-value=1.1e+02 Score=18.48 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=17.6
Q ss_pred ccccCCCCcCcc-cchhhhchhhHHHHH
Q 044764 5 EHEAGEASRDEI-STHEMNKGISILDLI 31 (186)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~ 31 (186)
.+|.|+++..|| .+.-..+++.+.++.
T Consensus 11 ~v~aG~A~P~PPvGpaLG~~GiNi~~Fc 38 (70)
T d3cjsb1 11 QLPAGKATPAPPVGPALGQHGANIMEFV 38 (70)
T ss_dssp EEETTCCCSSTTHHHHHHTTTCCHHHHH
T ss_pred EeecCCCCCCCCCcchhhhcCcCHHHHH
Confidence 467888776665 444346777777765
No 3
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=5.31 E-value=1.3e+02 Score=17.74 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=17.5
Q ss_pred ccccCCCCcCcc-cchhhhchhhHHHHH
Q 044764 5 EHEAGEASRDEI-STHEMNKGISILDLI 31 (186)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~ 31 (186)
.+|.|+++..|| .+.-..+++.+.++.
T Consensus 5 ~v~aG~A~p~PPvGpaLG~~GiNi~~F~ 32 (63)
T d1mmsa2 5 QLPAGKATPAPPVGPALGQHGVNIMEFC 32 (63)
T ss_dssp EEETTCCCCTTTTTHHHHTTTCCHHHHH
T ss_pred EEecCCCCCCCCCcchhhhcCcCHHHHH
Confidence 467888776655 444446777777765
No 4
>d2pn2a1 d.227.1.1 (A:1-132) Uncharacterized protein Psyc0566 {Psychrobacter arcticus 273-4 [TaxId: 259536]}
Probab=4.14 E-value=4.5e+02 Score=16.17 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=23.1
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHhccccce
Q 044764 19 HEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLT 55 (186)
Q Consensus 19 ~~~~~~~~~~~l~LR~~a~~~slaa~~vM~t~~q~~~ 55 (186)
.|-..+..-.+++ +.+++.|....+.+...+....
T Consensus 34 gG~~~g~~P~eLl--laala~C~~~~~~~~a~~~gi~ 68 (132)
T d2pn2a1 34 QGKGEAFSPTDLL--ATSLASCMLTIIGIKARDMEID 68 (132)
T ss_dssp TCCCSSCCHHHHH--HHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHH--HHHHHHHHHHHHHHHHHHcCCC
Confidence 3455667777877 4666777777777777666543
No 5
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=3.54 E-value=3.1e+02 Score=14.98 Aligned_cols=23 Identities=13% Similarity=-0.039 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCCcchhhhhhhh
Q 044764 129 TAIVYLAHKGNTSANWFAFCQLF 151 (186)
Q Consensus 129 ~~v~~l~~~G~~~~~W~~vC~~~ 151 (186)
++.-.+.++|-.++...++|...
T Consensus 9 aa~~l~~~~G~~~~ti~~Ia~~a 31 (69)
T d2np5a1 9 ALFDVAAESGLEGASVREVAKRA 31 (69)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHhCccccCHHHHHHHh
Confidence 44556778898888888888644
No 6
>d2g3wa1 c.52.1.33 (A:4-182) Hypothetical protein XAC2396 {Xanthomonas axonopodis pv. citri [TaxId: 92829]}
Probab=3.42 E-value=2.6e+02 Score=19.68 Aligned_cols=11 Identities=36% Similarity=0.316 Sum_probs=8.7
Q ss_pred HHHHHHHHHHH
Q 044764 30 LILRTIAAAGT 40 (186)
Q Consensus 30 l~LR~~a~~~s 40 (186)
+.+|++++++-
T Consensus 37 mm~RlLAfal~ 47 (179)
T d2g3wa1 37 LMVRLLAFALF 47 (179)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 57899988765
No 7
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.39 E-value=4.2e+02 Score=15.55 Aligned_cols=18 Identities=28% Similarity=0.091 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhhhHHH
Q 044764 113 FDLVMLTLVTAGASSATA 130 (186)
Q Consensus 113 ~Dqv~ayLl~saasAA~~ 130 (186)
-.+.+.||+.++.+.+.+
T Consensus 31 ~Rk~fsYl~~g~~~v~~a 48 (69)
T d1ppje2 31 ARKGFSYLVTATTTVGVA 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhceehhhhhhhHHHHHH
Confidence 347888988777664433
No 8
>d2ot9a1 c.52.1.33 (A:2-180) Hypothetical protein PSPTO1487 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=3.32 E-value=2.7e+02 Score=19.62 Aligned_cols=11 Identities=27% Similarity=0.126 Sum_probs=8.6
Q ss_pred HHHHHHHHHHH
Q 044764 30 LILRTIAAAGT 40 (186)
Q Consensus 30 l~LR~~a~~~s 40 (186)
+.+|++++++-
T Consensus 39 mm~RlLAfal~ 49 (179)
T d2ot9a1 39 MTVRLLAYAFW 49 (179)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 57899988764
No 9
>d1rrza_ a.7.10.1 (A:) Glycogen synthesis protein GlgS {Escherichia coli [TaxId: 562]}
Probab=3.20 E-value=2.3e+02 Score=16.56 Aligned_cols=14 Identities=21% Similarity=0.892 Sum_probs=11.2
Q ss_pred hhhhhhhhhHHHHH
Q 044764 147 FCQLFDSFCERISG 160 (186)
Q Consensus 147 vC~~~~~FC~~~~~ 160 (186)
.|..|..||.++.-
T Consensus 45 Fc~Ry~~Yc~q~~q 58 (66)
T d1rrza_ 45 FCARYAWYCQQMMQ 58 (66)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 68888889988754
No 10
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=2.82 E-value=4.5e+02 Score=14.33 Aligned_cols=22 Identities=9% Similarity=0.153 Sum_probs=16.2
Q ss_pred HHHHHHHhCCCCcchhhhhhhh
Q 044764 130 AIVYLAHKGNTSANWFAFCQLF 151 (186)
Q Consensus 130 ~v~~l~~~G~~~~~W~~vC~~~ 151 (186)
++-.+.++|-..+...++|...
T Consensus 9 A~~lf~~~G~~~~ti~~Ia~~a 30 (69)
T d2i10a1 9 AMELFWRQGYEGTSITDLTKAL 30 (69)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHHHHCcccCCHHHHHHHh
Confidence 3456778888888888887643
Done!