Query 044765
Match_columns 120
No_of_seqs 101 out of 1030
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:33:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1.8E-39 4E-44 256.4 7.2 107 2-108 176-324 (324)
2 cd00693 secretory_peroxidase H 100.0 7.8E-37 1.7E-41 239.7 7.7 106 2-107 156-298 (298)
3 PLN02608 L-ascorbate peroxidas 99.9 6E-27 1.3E-31 182.9 8.4 102 2-106 149-258 (289)
4 cd00692 ligninase Ligninase an 99.9 9.4E-24 2E-28 167.5 9.2 106 2-113 163-292 (328)
5 PLN02879 L-ascorbate peroxidas 99.9 1.1E-23 2.4E-28 162.0 6.8 89 2-93 152-248 (251)
6 cd00691 ascorbate_peroxidase A 99.9 3.1E-23 6.8E-28 159.7 7.4 89 2-93 151-251 (253)
7 PLN02364 L-ascorbate peroxidas 99.9 5.3E-23 1.2E-27 158.2 6.9 89 2-93 152-248 (250)
8 cd00649 catalase_peroxidase_1 99.9 4.2E-22 9.2E-27 161.1 6.5 97 2-98 230-401 (409)
9 cd00314 plant_peroxidase_like 99.8 3.6E-20 7.8E-25 142.0 7.2 88 2-89 147-255 (255)
10 TIGR00198 cat_per_HPI catalase 99.8 4.3E-19 9.4E-24 151.6 6.2 93 2-94 239-404 (716)
11 PRK15061 catalase/hydroperoxid 99.8 8.3E-19 1.8E-23 149.5 6.2 95 2-96 243-412 (726)
12 PF00141 peroxidase: Peroxidas 99.7 1E-17 2.2E-22 127.4 3.2 69 2-72 136-230 (230)
13 cd08200 catalase_peroxidase_2 99.5 4.3E-14 9.2E-19 110.8 6.5 87 2-91 180-296 (297)
14 TIGR00198 cat_per_HPI catalase 99.3 8.4E-12 1.8E-16 107.2 6.0 88 2-92 593-710 (716)
15 PRK15061 catalase/hydroperoxid 99.2 2.8E-11 6E-16 103.9 6.1 87 2-91 605-721 (726)
16 cd08201 plant_peroxidase_like_ 98.9 3.4E-09 7.3E-14 82.3 6.0 85 2-88 157-263 (264)
17 COG0376 KatG Catalase (peroxid 98.6 6.1E-08 1.3E-12 81.4 5.9 41 49-89 374-414 (730)
18 PF11895 DUF3415: Domain of un 91.6 0.21 4.5E-06 32.4 2.8 34 75-112 2-35 (80)
19 COG0376 KatG Catalase (peroxid 86.2 1.7 3.6E-05 37.6 5.2 31 61-91 693-725 (730)
20 PRK05264 transcriptional repre 27.5 68 0.0015 21.4 2.5 47 56-107 36-84 (105)
21 cd00490 Met_repressor_MetJ Met 27.3 69 0.0015 21.3 2.5 47 56-107 35-83 (103)
22 KOG3339 Predicted glycosyltran 23.6 23 0.00049 26.8 -0.3 13 3-15 39-52 (211)
23 COG1913 Predicted Zn-dependent 22.9 33 0.00071 25.5 0.4 19 12-31 133-151 (181)
24 PF04844 Ovate: Transcriptiona 22.0 76 0.0016 19.3 1.8 15 76-90 4-18 (59)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.8e-39 Score=256.36 Aligned_cols=107 Identities=37% Similarity=0.583 Sum_probs=101.1
Q ss_pred CcchhhhhccCcccccccccccccCcccCC-----CCCCCCchHHHHHHhcC----------------------------
Q 044765 2 TFGYLVLSTGAHTIGFAQCIAFKHRFFNYK-----PDPPPDSSALPNLQATC---------------------------- 48 (120)
Q Consensus 2 ~~~dlVaLsGaHTiG~~~c~~f~~r~~~~~-----~dp~~d~~f~~~L~~~c---------------------------- 48 (120)
+.+|||+||||||||++||.+|.+|+|||. +||+||+.|+..||..|
T Consensus 176 ~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nl 255 (324)
T PLN03030 176 NTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNL 255 (324)
T ss_pred CHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHH
Confidence 678999999999999999999999999864 38899999999999988
Q ss_pred -----CCcchHHHhcCcchHHHHHHhccCc----hhhHHHHHHHHHHHhhcCCCCCCCCccccccCccc
Q 044765 49 -----LLESDQALMADPRTAALVKAYSTNP----YLFSYDFAESMAKMSKIGYSPGKMGRSGSPVGRQH 108 (120)
Q Consensus 49 -----lL~SD~~L~~d~~t~~~V~~~a~~~----~~f~~~Fa~Am~Kl~~i~v~tg~~geiR~~C~~~n 108 (120)
+|+|||+|+.|++|+.+|+.||.|+ +.|+++|++||+|||+|+|+||.+||||++|+.+|
T Consensus 256 l~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 256 KNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred HhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 8999999999999999999999875 59999999999999999999999999999999987
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=7.8e-37 Score=239.74 Aligned_cols=106 Identities=43% Similarity=0.684 Sum_probs=99.6
Q ss_pred CcchhhhhccCcccccccccccccCcccCC----CCCCCCchHHHHHHhcC-----------------------------
Q 044765 2 TFGYLVLSTGAHTIGFAQCIAFKHRFFNYK----PDPPPDSSALPNLQATC----------------------------- 48 (120)
Q Consensus 2 ~~~dlVaLsGaHTiG~~~c~~f~~r~~~~~----~dp~~d~~f~~~L~~~c----------------------------- 48 (120)
+++|||+|+||||||++||.+|.+|+|+|+ +||+||+.|+..|+..|
T Consensus 156 ~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~ 235 (298)
T cd00693 156 TVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLL 235 (298)
T ss_pred CHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHH
Confidence 578999999999999999999999999874 57888888888888877
Q ss_pred ----CCcchHHHhcCcchHHHHHHhccCchhhHHHHHHHHHHHhhcCCCCCCCCccccccCcc
Q 044765 49 ----LLESDQALMADPRTAALVKAYSTNPYLFSYDFAESMAKMSKIGYSPGKMGRSGSPVGRQ 107 (120)
Q Consensus 49 ----lL~SD~~L~~d~~t~~~V~~~a~~~~~f~~~Fa~Am~Kl~~i~v~tg~~geiR~~C~~~ 107 (120)
+|+||++|+.|++|+.+|+.||.||+.|+++|++||+|||+|+|+||.+||||++|+.+
T Consensus 236 ~~~glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 236 AGRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred hcccCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 89999999999999999999999999999999999999999999999999999999974
No 3
>PLN02608 L-ascorbate peroxidase
Probab=99.94 E-value=6e-27 Score=182.93 Aligned_cols=102 Identities=27% Similarity=0.385 Sum_probs=86.7
Q ss_pred CcchhhhhccCccccccccccc--ccCcccCCCCC-CCCchHHHHHHhc---CC--CcchHHHhcCcchHHHHHHhccCc
Q 044765 2 TFGYLVLSTGAHTIGFAQCIAF--KHRFFNYKPDP-PPDSSALPNLQAT---CL--LESDQALMADPRTAALVKAYSTNP 73 (120)
Q Consensus 2 ~~~dlVaLsGaHTiG~~~c~~f--~~r~~~~~~dp-~~d~~f~~~L~~~---cl--L~SD~~L~~d~~t~~~V~~~a~~~ 73 (120)
+++|||+|+||||||++||... .+. +. .+| .||+.|+..|... -+ |+||++|+.|++|+.+|+.||.||
T Consensus 149 ~~~D~VaLsGAHTiG~ahc~r~g~~g~-~~--~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~~T~~~V~~fA~~~ 225 (289)
T PLN02608 149 SDKDIVALSGGHTLGRAHPERSGFDGP-WT--KEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRPYVELYAKDE 225 (289)
T ss_pred CHHHHhhhccccccccccccCCCCCCC-CC--CCCCccChHHHHHHHcCCcCCccccccCHhhhcChhHHHHHHHHhhCH
Confidence 6799999999999999999621 111 11 245 6999988877654 33 899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCCCCccccccCc
Q 044765 74 YLFSYDFAESMAKMSKIGYSPGKMGRSGSPVGR 106 (120)
Q Consensus 74 ~~f~~~Fa~Am~Kl~~i~v~tg~~geiR~~C~~ 106 (120)
+.|+++|++||+|||+|+|+||.+||+.+..+.
T Consensus 226 ~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~~ 258 (289)
T PLN02608 226 DAFFRDYAESHKKLSELGFTPPSSAFKKKSTST 258 (289)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcccccCcc
Confidence 999999999999999999999999999987543
No 4
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=99.90 E-value=9.4e-24 Score=167.49 Aligned_cols=106 Identities=23% Similarity=0.214 Sum_probs=86.5
Q ss_pred CcchhhhhccCcccccccccccccCcc--cCCCCC-CCCchHHHHHH--hcC-------------------CCcchHHHh
Q 044765 2 TFGYLVLSTGAHTIGFAQCIAFKHRFF--NYKPDP-PPDSSALPNLQ--ATC-------------------LLESDQALM 57 (120)
Q Consensus 2 ~~~dlVaLsGaHTiG~~~c~~f~~r~~--~~~~dp-~~d~~f~~~L~--~~c-------------------lL~SD~~L~ 57 (120)
+++|||+|+||||||++|... +.+. +++..| .||+.|+..+. ..- +|+||++|+
T Consensus 163 ~~~E~VaLsGAHTiG~a~~~D--ps~~g~p~D~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~ 240 (328)
T cd00692 163 SPDELVALLAAHSVAAQDFVD--PSIAGTPFDSTPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLA 240 (328)
T ss_pred CHHHHhhhcccccccccCCCC--CCCCCCCCCCCcchhcHHHHHHHHHcCCCCCCccccccccccCccccccccchHHHh
Confidence 678999999999999998532 2221 222334 69999887644 222 599999999
Q ss_pred cCcchHHHHHHhccCchhhHHHHHHHHHHHhhcCCCCCCCCccccccCcccCCCCC
Q 044765 58 ADPRTAALVKAYSTNPYLFSYDFAESMAKMSKIGYSPGKMGRSGSPVGRQHRNNLA 113 (120)
Q Consensus 58 ~d~~t~~~V~~~a~~~~~f~~~Fa~Am~Kl~~i~v~tg~~geiR~~C~~~n~~~~~ 113 (120)
.|++|+.+|+.|+.||+.|+++|++||+||++||| ....+.+|+.|++....
T Consensus 241 ~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv----~~~~l~dcs~v~p~~~~ 292 (328)
T cd00692 241 RDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQ----DNISLTDCSDVIPPPKP 292 (328)
T ss_pred cCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCC----CcchhccCcccCCCCCC
Confidence 99999999999999999999999999999999999 56688899999987753
No 5
>PLN02879 L-ascorbate peroxidase
Probab=99.89 E-value=1.1e-23 Score=161.96 Aligned_cols=89 Identities=27% Similarity=0.452 Sum_probs=75.2
Q ss_pred CcchhhhhccCcccccccccc--cccCcccCCCCC-CCCchHHHHHHhc---C--CCcchHHHhcCcchHHHHHHhccCc
Q 044765 2 TFGYLVLSTGAHTIGFAQCIA--FKHRFFNYKPDP-PPDSSALPNLQAT---C--LLESDQALMADPRTAALVKAYSTNP 73 (120)
Q Consensus 2 ~~~dlVaLsGaHTiG~~~c~~--f~~r~~~~~~dp-~~d~~f~~~L~~~---c--lL~SD~~L~~d~~t~~~V~~~a~~~ 73 (120)
+++|||+||||||||++||.. |... +. .+| .||+.|+..|... - .|+||++|+.|++|+.+|+.|+.||
T Consensus 152 ~~~dlVALsGaHTiG~ah~~r~g~~g~-~d--~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~~A~d~ 228 (251)
T PLN02879 152 NDKDIVALSGGHTLGRCHKERSGFEGA-WT--PNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAADE 228 (251)
T ss_pred CHHHHeeeeccccccccccccccCCCC-CC--CCccceeHHHHHHHHcCCcCCCccchhhHHHhcCCcHHHHHHHHhhCH
Confidence 678999999999999999952 2222 11 244 6999988877664 2 3799999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhcCCC
Q 044765 74 YLFSYDFAESMAKMSKIGYS 93 (120)
Q Consensus 74 ~~f~~~Fa~Am~Kl~~i~v~ 93 (120)
+.|+++|++||+||++|++.
T Consensus 229 ~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 229 DAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred HHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999974
No 6
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=99.89 E-value=3.1e-23 Score=159.70 Aligned_cols=89 Identities=28% Similarity=0.418 Sum_probs=75.5
Q ss_pred CcchhhhhccCcccccccccccccCcccC--CCCC-CCCchHHHHHHh-cC--------CCcchHHHhcCcchHHHHHHh
Q 044765 2 TFGYLVLSTGAHTIGFAQCIAFKHRFFNY--KPDP-PPDSSALPNLQA-TC--------LLESDQALMADPRTAALVKAY 69 (120)
Q Consensus 2 ~~~dlVaLsGaHTiG~~~c~~f~~r~~~~--~~dp-~~d~~f~~~L~~-~c--------lL~SD~~L~~d~~t~~~V~~~ 69 (120)
|++|||+|+||||||++||..+ . |+. ..+| .||+.|+..|.. .. +|+||++|+.|++|+.+|+.|
T Consensus 151 s~~d~VaLsGaHTiG~a~c~~~--~-~~g~~~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~L~~d~~t~~~v~~~ 227 (253)
T cd00691 151 NDQEIVALSGAHTLGRCHKERS--G-YDGPWTKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKALLEDPKFRPYVELY 227 (253)
T ss_pred CHHHHHHhcccceeecccccCC--C-CCCCCCCCCCcccHHHHHHHhcCCCccCcCcceechhhHHHHcCccHHHHHHHH
Confidence 6799999999999999999642 1 111 1234 699997776655 45 899999999999999999999
Q ss_pred ccCchhhHHHHHHHHHHHhhcCCC
Q 044765 70 STNPYLFSYDFAESMAKMSKIGYS 93 (120)
Q Consensus 70 a~~~~~f~~~Fa~Am~Kl~~i~v~ 93 (120)
+.|++.|+++|++||+||++|+|.
T Consensus 228 a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 228 AKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred hhCHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999984
No 7
>PLN02364 L-ascorbate peroxidase 1
Probab=99.88 E-value=5.3e-23 Score=158.18 Aligned_cols=89 Identities=33% Similarity=0.475 Sum_probs=74.5
Q ss_pred CcchhhhhccCcccccccccc--cccCcccCCCCC-CCCchHHHHHHhc---CC--CcchHHHhcCcchHHHHHHhccCc
Q 044765 2 TFGYLVLSTGAHTIGFAQCIA--FKHRFFNYKPDP-PPDSSALPNLQAT---CL--LESDQALMADPRTAALVKAYSTNP 73 (120)
Q Consensus 2 ~~~dlVaLsGaHTiG~~~c~~--f~~r~~~~~~dp-~~d~~f~~~L~~~---cl--L~SD~~L~~d~~t~~~V~~~a~~~ 73 (120)
+++|||+|+||||||++||.. |.+.+ . .+| +||+.|+..|... -+ |+||++|+.|++|+.+|+.|+.|+
T Consensus 152 ~~~d~VaLsGaHTiG~~hc~r~~~~g~~-~--~tp~~fDn~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~ 228 (250)
T PLN02364 152 SDKDIVALSGAHTLGRCHKDRSGFEGAW-T--SNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADE 228 (250)
T ss_pred CHHHheeeecceeeccccCCCCCCCCCC-C--CCCCccchHHHHHHhcCCcCCCccccchHHHccCchHHHHHHHHhhCH
Confidence 678999999999999999932 22211 1 244 7999988888764 34 569999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhcCCC
Q 044765 74 YLFSYDFAESMAKMSKIGYS 93 (120)
Q Consensus 74 ~~f~~~Fa~Am~Kl~~i~v~ 93 (120)
+.|+++|++||+||++|++-
T Consensus 229 ~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 229 DAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999973
No 8
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=99.86 E-value=4.2e-22 Score=161.12 Aligned_cols=97 Identities=26% Similarity=0.325 Sum_probs=81.0
Q ss_pred Ccchhhhh-ccCcccccccccccccCccc------------------------------CC----CCC-CCCchHHHHHH
Q 044765 2 TFGYLVLS-TGAHTIGFAQCIAFKHRFFN------------------------------YK----PDP-PPDSSALPNLQ 45 (120)
Q Consensus 2 ~~~dlVaL-sGaHTiG~~~c~~f~~r~~~------------------------------~~----~dp-~~d~~f~~~L~ 45 (120)
+.+||||| +||||||++||..|..|+.+ ++ .+| .||+.|+..|.
T Consensus 230 nd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl 309 (409)
T cd00649 230 NDEETVALIAGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLF 309 (409)
T ss_pred CHHHHeeeccCCcceeecCcccccccCCCCCCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHH
Confidence 67899999 59999999999988766531 11 133 58888888775
Q ss_pred h-------------------------------------cCCCcchHHHhcCcchHHHHHHhccCchhhHHHHHHHHHHH-
Q 044765 46 A-------------------------------------TCLLESDQALMADPRTAALVKAYSTNPYLFSYDFAESMAKM- 87 (120)
Q Consensus 46 ~-------------------------------------~clL~SD~~L~~d~~t~~~V~~~a~~~~~f~~~Fa~Am~Kl- 87 (120)
. .-+|+||++|+.|+.++.+|+.|+.|++.||++|++||+||
T Consensus 310 ~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~ 389 (409)
T cd00649 310 GYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLT 389 (409)
T ss_pred hccceeccCCCCcccccccCccccccCCCccccccccCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHc
Confidence 5 13899999999999999999999999999999999999999
Q ss_pred -hhcCCCCCCCC
Q 044765 88 -SKIGYSPGKMG 98 (120)
Q Consensus 88 -~~i~v~tg~~g 98 (120)
+.+||++.-.|
T Consensus 390 hrdmgp~~~~~g 401 (409)
T cd00649 390 HRDMGPKSRYLG 401 (409)
T ss_pred cccCCchhhhcC
Confidence 68999876544
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=99.81 E-value=3.6e-20 Score=142.05 Aligned_cols=88 Identities=33% Similarity=0.360 Sum_probs=76.3
Q ss_pred Ccchhhhhc-cCccc-ccccccccccCcccCC-CCC-CCCchHHHHHHh-c----------------CCCcchHHHhcCc
Q 044765 2 TFGYLVLST-GAHTI-GFAQCIAFKHRFFNYK-PDP-PPDSSALPNLQA-T----------------CLLESDQALMADP 60 (120)
Q Consensus 2 ~~~dlVaLs-GaHTi-G~~~c~~f~~r~~~~~-~dp-~~d~~f~~~L~~-~----------------clL~SD~~L~~d~ 60 (120)
+++|||||+ ||||| |++||..|..|+.... .+| +||+.|++.|.. . -+|+||+.|+.|+
T Consensus 147 ~~~e~VAL~~GaHti~G~~~~~~~~~~~~~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~ 226 (255)
T cd00314 147 SPSELVALSAGAHTLGGKNHGDLLNYEGSGLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDS 226 (255)
T ss_pred CHHHHHhhccCCeeccCcccCCCCCcccCCCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCH
Confidence 689999999 99999 9999999988753221 344 799997776655 4 3999999999999
Q ss_pred chHHHHHHhccCchhhHHHHHHHHHHHhh
Q 044765 61 RTAALVKAYSTNPYLFSYDFAESMAKMSK 89 (120)
Q Consensus 61 ~t~~~V~~~a~~~~~f~~~Fa~Am~Kl~~ 89 (120)
+|+.+|+.|+.|++.|+.+|++||+||++
T Consensus 227 ~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 227 ETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred hHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999984
No 10
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.77 E-value=4.3e-19 Score=151.57 Aligned_cols=93 Identities=22% Similarity=0.255 Sum_probs=75.9
Q ss_pred Ccchhhhhc-cCcccccccccccccCcc------------------------------cCC----CCC-CCCchHHHHHH
Q 044765 2 TFGYLVLST-GAHTIGFAQCIAFKHRFF------------------------------NYK----PDP-PPDSSALPNLQ 45 (120)
Q Consensus 2 ~~~dlVaLs-GaHTiG~~~c~~f~~r~~------------------------------~~~----~dp-~~d~~f~~~L~ 45 (120)
|.+|||||+ ||||||++||.+|.+|+- .++ .+| .||+.|...|.
T Consensus 239 nd~EmVALiaGaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl 318 (716)
T TIGR00198 239 NDEETVALIAGGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLF 318 (716)
T ss_pred ChHHHeeeecCceeccccCCCcccccCCCCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHh
Confidence 678999995 999999999998875541 000 233 58888877776
Q ss_pred hc-----------------------------------CCCcchHHHhcCcchHHHHHHhccCchhhHHHHHHHHHHHhh-
Q 044765 46 AT-----------------------------------CLLESDQALMADPRTAALVKAYSTNPYLFSYDFAESMAKMSK- 89 (120)
Q Consensus 46 ~~-----------------------------------clL~SD~~L~~d~~t~~~V~~~a~~~~~f~~~Fa~Am~Kl~~- 89 (120)
.. -+|.||++|..|+.++.+|+.|+.|++.|+++|++||+||++
T Consensus 319 ~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~ 398 (716)
T TIGR00198 319 NYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHR 398 (716)
T ss_pred cCCceeeecCCCCceeeecccccccccccccccccccCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHccc
Confidence 42 279999999999999999999999999999999999999985
Q ss_pred -cCCCC
Q 044765 90 -IGYSP 94 (120)
Q Consensus 90 -i~v~t 94 (120)
+||+.
T Consensus 399 d~gp~~ 404 (716)
T TIGR00198 399 DMGPKS 404 (716)
T ss_pred ccCchh
Confidence 55543
No 11
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.76 E-value=8.3e-19 Score=149.48 Aligned_cols=95 Identities=23% Similarity=0.261 Sum_probs=77.0
Q ss_pred Ccchhhhhc-cCcccccccccccccCcc------------------------------cCC----CCC-CCCchHHHHHH
Q 044765 2 TFGYLVLST-GAHTIGFAQCIAFKHRFF------------------------------NYK----PDP-PPDSSALPNLQ 45 (120)
Q Consensus 2 ~~~dlVaLs-GaHTiG~~~c~~f~~r~~------------------------------~~~----~dp-~~d~~f~~~L~ 45 (120)
+.+|||||+ ||||||++||..|..|+. .++ .+| .||+.|++.|.
T Consensus 243 nDeEtVALiaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl 322 (726)
T PRK15061 243 NDEETVALIAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLF 322 (726)
T ss_pred CHHHheeeccCCceeeeCCCcCcccccCCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHh
Confidence 678999995 999999999988765441 010 234 48888888776
Q ss_pred hc-------------------------------------CCCcchHHHhcCcchHHHHHHhccCchhhHHHHHHHHHHHh
Q 044765 46 AT-------------------------------------CLLESDQALMADPRTAALVKAYSTNPYLFSYDFAESMAKMS 88 (120)
Q Consensus 46 ~~-------------------------------------clL~SD~~L~~d~~t~~~V~~~a~~~~~f~~~Fa~Am~Kl~ 88 (120)
.. -+|+||++|..|+.++.+|+.|+.|++.|+.+|++||+||.
T Consensus 323 ~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~ 402 (726)
T PRK15061 323 GYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLT 402 (726)
T ss_pred hCcceeccCCCccccccccCccccccCCcccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHc
Confidence 52 28999999999999999999999999999999999999994
Q ss_pred --hcCCCCCC
Q 044765 89 --KIGYSPGK 96 (120)
Q Consensus 89 --~i~v~tg~ 96 (120)
.+||+..-
T Consensus 403 hrdmgp~~ry 412 (726)
T PRK15061 403 HRDMGPKSRY 412 (726)
T ss_pred ccCCCchhhh
Confidence 46765543
No 12
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=99.69 E-value=1e-17 Score=127.40 Aligned_cols=69 Identities=43% Similarity=0.694 Sum_probs=56.6
Q ss_pred CcchhhhhccCcccccccccccccCcccCCCC------------------------C-CCCchHHHHHHhc-CCCcchHH
Q 044765 2 TFGYLVLSTGAHTIGFAQCIAFKHRFFNYKPD------------------------P-PPDSSALPNLQAT-CLLESDQA 55 (120)
Q Consensus 2 ~~~dlVaLsGaHTiG~~~c~~f~~r~~~~~~d------------------------p-~~d~~f~~~L~~~-clL~SD~~ 55 (120)
|++|||+|+||||||++||.+|. |+| +.+| | .||+.|++.|... -+|.||++
T Consensus 136 s~~e~VaLsGaHTiG~~~c~~f~-rl~-~~~dp~~d~~~~~~~C~~~~~~~~~~dtp~~fDN~Yy~~ll~~~gll~SD~~ 213 (230)
T PF00141_consen 136 SAEEMVALSGAHTIGRAHCSSFS-RLY-FPPDPTMDPGYAGQNCNSGGDNGVPLDTPTVFDNSYYKNLLNGRGLLPSDQA 213 (230)
T ss_dssp -HHHHHHHHGGGGSTEESGGCTG-GTS-CSSGTTSTHHHHHHSSSTSGCTCEESSSTTS-SSHHHHHHHHTEEEEHHHHH
T ss_pred chhhhcceecccccccceecccc-ccc-cccccccccccceeccCCCccccccccCCCcchhHHHHHHhcCCCcCHHHHH
Confidence 67999999999999999999999 998 2222 3 4777766655554 49999999
Q ss_pred HhcCcchHHHHHHhccC
Q 044765 56 LMADPRTAALVKAYSTN 72 (120)
Q Consensus 56 L~~d~~t~~~V~~~a~~ 72 (120)
|+.|++|+.+|+.||.|
T Consensus 214 L~~d~~t~~~V~~yA~d 230 (230)
T PF00141_consen 214 LLNDPETRPIVERYAQD 230 (230)
T ss_dssp HHHSTTHHHHHHHHHHT
T ss_pred HhcCHHHHHHHHHHhcC
Confidence 99999999999999975
No 13
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=99.49 E-value=4.3e-14 Score=110.80 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=70.8
Q ss_pred CcchhhhhccCc-ccccccccccccCcccCCCCC-CCCchHHHHHHhc---C-----------------------CCcch
Q 044765 2 TFGYLVLSTGAH-TIGFAQCIAFKHRFFNYKPDP-PPDSSALPNLQAT---C-----------------------LLESD 53 (120)
Q Consensus 2 ~~~dlVaLsGaH-TiG~~~c~~f~~r~~~~~~dp-~~d~~f~~~L~~~---c-----------------------lL~SD 53 (120)
|+.|||||+||| ++|.+|..++...+. .+| ++++.|...|... + .+.+|
T Consensus 180 sd~EmvaL~Gg~r~lG~~~~~s~~G~wT---~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~D 256 (297)
T cd08200 180 TAPEMTVLVGGLRVLGANYGGSKHGVFT---DRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVD 256 (297)
T ss_pred ChHHHhheecchhhcccCCCCCCCCCCc---CCCCccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhh
Confidence 678999999997 799988766554433 355 6999977666420 0 37789
Q ss_pred HHHhcCcchHHHHHHhccC--chhhHHHHHHHHHHHhhcC
Q 044765 54 QALMADPRTAALVKAYSTN--PYLFSYDFAESMAKMSKIG 91 (120)
Q Consensus 54 ~~L~~d~~t~~~V~~~a~~--~~~f~~~Fa~Am~Kl~~i~ 91 (120)
..|..|++.+.+|+.||.| ++.|+++|++|+.||.++.
T Consensus 257 l~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 257 LVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred hhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998 9999999999999998863
No 14
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.25 E-value=8.4e-12 Score=107.24 Aligned_cols=88 Identities=15% Similarity=0.136 Sum_probs=70.9
Q ss_pred CcchhhhhccC-cccccccccccccCcccCCCCC-CCCchHHHHHHhc---C---------------------C--Ccch
Q 044765 2 TFGYLVLSTGA-HTIGFAQCIAFKHRFFNYKPDP-PPDSSALPNLQAT---C---------------------L--LESD 53 (120)
Q Consensus 2 ~~~dlVaLsGa-HTiG~~~c~~f~~r~~~~~~dp-~~d~~f~~~L~~~---c---------------------l--L~SD 53 (120)
|..|||||+|| |++|++|..++...+. ..| ++++.|...|... . + +.+|
T Consensus 593 t~~EmvaL~Gg~r~lG~~~~~s~~G~~T---~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~D 669 (716)
T TIGR00198 593 TAPEMTVLIGGMRVLGANHGGSKHGVFT---DRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVD 669 (716)
T ss_pred ChHHHHheecchhhccccCCCCCCCCCc---CCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhh
Confidence 67899999999 5999999876554433 245 6999976666431 1 3 3669
Q ss_pred HHHhcCcchHHHHHHhccCc--hhhHHHHHHHHHHHhhcCC
Q 044765 54 QALMADPRTAALVKAYSTNP--YLFSYDFAESMAKMSKIGY 92 (120)
Q Consensus 54 ~~L~~d~~t~~~V~~~a~~~--~~f~~~Fa~Am~Kl~~i~v 92 (120)
..|..|++.+++|+.||.|+ +.|++||++|+.||.+++-
T Consensus 670 l~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ldr 710 (716)
T TIGR00198 670 LVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLDR 710 (716)
T ss_pred eeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHHhCCC
Confidence 99999999999999999997 9999999999999998863
No 15
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.19 E-value=2.8e-11 Score=103.90 Aligned_cols=87 Identities=17% Similarity=0.193 Sum_probs=69.9
Q ss_pred CcchhhhhccCc-ccccccccccccCcccCCCCC-CCCchHHHHHHh---cC---------------------C--Ccch
Q 044765 2 TFGYLVLSTGAH-TIGFAQCIAFKHRFFNYKPDP-PPDSSALPNLQA---TC---------------------L--LESD 53 (120)
Q Consensus 2 ~~~dlVaLsGaH-TiG~~~c~~f~~r~~~~~~dp-~~d~~f~~~L~~---~c---------------------l--L~SD 53 (120)
|..|||||+||| ++|.+|-.++..-+. ..| ++++.|...|.. .. + +.+|
T Consensus 605 t~~EmvaL~Gg~r~Lg~~~~~S~~G~~T---~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~D 681 (726)
T PRK15061 605 TAPEMTVLVGGLRVLGANYGGSKHGVFT---DRPGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVD 681 (726)
T ss_pred ChHHHhheecchhhcccCCCCCCCCCCc---CCCCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhh
Confidence 678999999997 789988766544432 245 699996666642 10 2 5679
Q ss_pred HHHhcCcchHHHHHHhccC--chhhHHHHHHHHHHHhhcC
Q 044765 54 QALMADPRTAALVKAYSTN--PYLFSYDFAESMAKMSKIG 91 (120)
Q Consensus 54 ~~L~~d~~t~~~V~~~a~~--~~~f~~~Fa~Am~Kl~~i~ 91 (120)
..|..|++.|.+++.||.| ++.|++||++|+.|+.+++
T Consensus 682 lvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeld 721 (726)
T PRK15061 682 LVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLD 721 (726)
T ss_pred eecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCC
Confidence 9999999999999999998 9999999999999999886
No 16
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=98.89 E-value=3.4e-09 Score=82.28 Aligned_cols=85 Identities=13% Similarity=0.185 Sum_probs=60.6
Q ss_pred Ccchhhhhcc-CcccccccccccccCcc---------cCCCCC-CCCchHHHHHHhc-C----------CCcchHHHhcC
Q 044765 2 TFGYLVLSTG-AHTIGFAQCIAFKHRFF---------NYKPDP-PPDSSALPNLQAT-C----------LLESDQALMAD 59 (120)
Q Consensus 2 ~~~dlVaLsG-aHTiG~~~c~~f~~r~~---------~~~~dp-~~d~~f~~~L~~~-c----------lL~SD~~L~~d 59 (120)
+++|||+||| |||||++||..|.+..- +++.+| .||++|..++.+. - .+.||..+|..
T Consensus 157 s~~DmVaLsggaHTiG~ahc~~f~~~~~~g~~~~~~~p~dstp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~ 236 (264)
T cd08201 157 STSEMIALVACGHTLGGVHSEDFPEIVPPGSVPDTVLQFFDTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSS 236 (264)
T ss_pred ChHHHheeecCCeeeeecccccchhhcCCccccCCCCCCCCCccccchHHHHHHhcCCCCCceeecCCCCccchhhheec
Confidence 6789999996 99999999998832211 122234 6999977766542 1 68889998873
Q ss_pred cchHHHHHHhccCchhhHHHHHHHHHHHh
Q 044765 60 PRTAALVKAYSTNPYLFSYDFAESMAKMS 88 (120)
Q Consensus 60 ~~t~~~V~~~a~~~~~f~~~Fa~Am~Kl~ 88 (120)
..- ..++..+ ++..|...=+..+.||-
T Consensus 237 d~n-~t~~~l~-~~~~f~~~c~~~~~~mi 263 (264)
T cd08201 237 DGN-VTMNELA-SPDTFQKTCADILQRMI 263 (264)
T ss_pred Ccc-HHHHHhc-ChHHHHHHHHHHHHHHh
Confidence 222 2345565 78999999999999985
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=98.63 E-value=6.1e-08 Score=81.38 Aligned_cols=41 Identities=27% Similarity=0.455 Sum_probs=39.8
Q ss_pred CCcchHHHhcCcchHHHHHHhccCchhhHHHHHHHHHHHhh
Q 044765 49 LLESDQALMADPRTAALVKAYSTNPYLFSYDFAESMAKMSK 89 (120)
Q Consensus 49 lL~SD~~L~~d~~t~~~V~~~a~~~~~f~~~Fa~Am~Kl~~ 89 (120)
+|.+|.+|..||..+.+.+.|..||+.|...|++|+.||.+
T Consensus 374 MlttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtH 414 (730)
T COG0376 374 MLTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTH 414 (730)
T ss_pred eeccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999976
No 18
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=91.64 E-value=0.21 Score=32.40 Aligned_cols=34 Identities=15% Similarity=0.044 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCCCccccccCcccCCCC
Q 044765 75 LFSYDFAESMAKMSKIGYSPGKMGRSGSPVGRQHRNNL 112 (120)
Q Consensus 75 ~f~~~Fa~Am~Kl~~i~v~tg~~geiR~~C~~~n~~~~ 112 (120)
.....|..+|.||+.||- +-.---+|+.|.+...
T Consensus 2 ~m~~~F~~am~KlavLG~----d~~~LiDCSdVIP~p~ 35 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGH----DRSDLIDCSDVIPVPK 35 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-----GGGSEE-GGGS----
T ss_pred hHHHHHHHHHHHHHHhcC----ChhhcccchhhccCCC
Confidence 356789999999997764 5555678999986543
No 19
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=86.24 E-value=1.7 Score=37.65 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=24.7
Q ss_pred chHHHHHHhccC--chhhHHHHHHHHHHHhhcC
Q 044765 61 RTAALVKAYSTN--PYLFSYDFAESMAKMSKIG 91 (120)
Q Consensus 61 ~t~~~V~~~a~~--~~~f~~~Fa~Am~Kl~~i~ 91 (120)
.-|.+.+-|+.+ ++.|.+||+.|+.|.-|+.
T Consensus 693 ~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 693 ELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 346677778764 8999999999999977653
No 20
>PRK05264 transcriptional repressor protein MetJ; Provisional
Probab=27.49 E-value=68 Score=21.42 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=32.7
Q ss_pred HhcCcchHHHHHHh--ccCchhhHHHHHHHHHHHhhcCCCCCCCCccccccCcc
Q 044765 56 LMADPRTAALVKAY--STNPYLFSYDFAESMAKMSKIGYSPGKMGRSGSPVGRQ 107 (120)
Q Consensus 56 L~~d~~t~~~V~~~--a~~~~~f~~~Fa~Am~Kl~~i~v~tg~~geiR~~C~~~ 107 (120)
.++|.+||..|+.. |.|.++..+.|..|+.- -.-..+...|+++..-
T Consensus 36 iLTdERTRRQvnNLRHATNSELLCEAFLHA~TG-----QPLP~D~Dl~Kd~~d~ 84 (105)
T PRK05264 36 ILTDERTRRQVNNLRHATNSELLCEAFLHAFTG-----QPLPDDEDLRKERSDE 84 (105)
T ss_pred HHhhHHHHHHHhhhhhcccHHHHHHHHHHHHcC-----CCCCChhhhhhcCccc
Confidence 46799999988765 67899999999988742 2222355666665443
No 21
>cd00490 Met_repressor_MetJ Met Repressor, MetJ. MetJ is a bacterial regulatory protein that uses S-adenosylmethionine (SAM) as a corepressor to regulate the production of Methionine. MetJ binds arrays of two to five adjacent copies of an eight base-pair 'metbox' sequence. MetJ forms sufficiently strong interactions with the sugar-phosphate backbone to accomodate sequence variation in natural operators. However, it is very sensitive to particular base changes in the operator. MetJ exists as a homodimer.
Probab=27.29 E-value=69 Score=21.26 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=33.0
Q ss_pred HhcCcchHHHHHHh--ccCchhhHHHHHHHHHHHhhcCCCCCCCCccccccCcc
Q 044765 56 LMADPRTAALVKAY--STNPYLFSYDFAESMAKMSKIGYSPGKMGRSGSPVGRQ 107 (120)
Q Consensus 56 L~~d~~t~~~V~~~--a~~~~~f~~~Fa~Am~Kl~~i~v~tg~~geiR~~C~~~ 107 (120)
.++|.+||..|+.. |.|.+...+.|..|+.- -.-..+...|+++...
T Consensus 35 iLTdERTRRQvnnlRHATNSELLCEAFLHAfTG-----QPLP~D~Dl~K~~~d~ 83 (103)
T cd00490 35 ILTDERTRRQVNNLRHATNSELLCEAFLHAFTG-----QPLPDDADLRKERSDE 83 (103)
T ss_pred HHhhHHHHHHHhhhhhcccHHHHHHHHHHHhcC-----CCCCChhhhhhcCccc
Confidence 46799999988765 67899999999988742 2223456666665543
No 22
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=23.65 E-value=23 Score=26.81 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=9.1
Q ss_pred cchhhhh-ccCccc
Q 044765 3 FGYLVLS-TGAHTI 15 (120)
Q Consensus 3 ~~dlVaL-sGaHTi 15 (120)
..-+|+| |||||-
T Consensus 39 ~~~lVvlGSGGHT~ 52 (211)
T KOG3339|consen 39 LSTLVVLGSGGHTG 52 (211)
T ss_pred ceEEEEEcCCCcHH
Confidence 3446666 999994
No 23
>COG1913 Predicted Zn-dependent proteases [General function prediction only]
Probab=22.91 E-value=33 Score=25.53 Aligned_cols=19 Identities=21% Similarity=0.632 Sum_probs=13.7
Q ss_pred CcccccccccccccCcccCC
Q 044765 12 AHTIGFAQCIAFKHRFFNYK 31 (120)
Q Consensus 12 aHTiG~~~c~~f~~r~~~~~ 31 (120)
||+.|-.||.+ ..-..+|+
T Consensus 133 GH~~GL~HC~N-~~CVM~FS 151 (181)
T COG1913 133 GHLLGLSHCPN-PRCVMNFS 151 (181)
T ss_pred hhhcCcccCCC-CCcEEeCC
Confidence 79999999997 22445553
No 24
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=21.97 E-value=76 Score=19.26 Aligned_cols=15 Identities=40% Similarity=0.337 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHhhc
Q 044765 76 FSYDFAESMAKMSKI 90 (120)
Q Consensus 76 f~~~Fa~Am~Kl~~i 90 (120)
-++||.++|+-|..-
T Consensus 4 P~~DFr~SM~EMI~~ 18 (59)
T PF04844_consen 4 PYEDFRESMVEMIEE 18 (59)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467999999999653
Done!