Query 044767
Match_columns 656
No_of_seqs 444 out of 2222
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:35:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10314 putative acyltransfer 99.4 5.7E-13 1.2E-17 127.6 11.3 96 535-631 48-147 (153)
2 KOG1244 Predicted transcriptio 99.4 1.4E-13 3.1E-18 139.8 1.0 92 337-443 225-332 (336)
3 PF13508 Acetyltransf_7: Acety 99.3 2.9E-11 6.2E-16 102.1 10.3 77 535-615 3-79 (79)
4 TIGR01575 rimI ribosomal-prote 99.2 8.2E-11 1.8E-15 105.8 12.0 112 492-618 2-116 (131)
5 COG2153 ElaA Predicted acyltra 99.2 2.3E-11 5E-16 114.7 8.4 99 535-634 49-152 (155)
6 PRK10146 aminoalkylphosphonic 99.2 1.8E-10 3.9E-15 106.5 12.4 84 536-620 48-140 (144)
7 PLN02825 amino-acid N-acetyltr 99.2 1.7E-10 3.7E-15 130.1 13.8 89 537-627 409-503 (515)
8 PF00583 Acetyltransf_1: Acety 99.2 1.9E-10 4.1E-15 96.4 10.0 74 540-614 1-83 (83)
9 COG1246 ArgA N-acetylglutamate 99.2 6.8E-11 1.5E-15 113.1 8.0 80 538-619 43-124 (153)
10 PF13673 Acetyltransf_10: Acet 99.1 1.8E-10 3.9E-15 102.6 9.4 74 535-613 44-117 (117)
11 PTZ00330 acetyltransferase; Pr 99.1 8.3E-10 1.8E-14 102.4 12.5 83 536-619 53-142 (147)
12 KOG1512 PHD Zn-finger protein 99.1 2.6E-11 5.5E-16 124.2 2.1 90 336-441 258-362 (381)
13 PF13527 Acetyltransf_9: Acety 99.1 2.4E-09 5.1E-14 97.3 13.7 111 491-616 9-127 (127)
14 TIGR02382 wecD_rffC TDP-D-fuco 99.0 3E-09 6.5E-14 104.8 13.0 79 538-617 102-184 (191)
15 PRK09491 rimI ribosomal-protei 99.0 4.6E-09 9.9E-14 98.1 13.3 83 535-618 40-125 (146)
16 TIGR03827 GNAT_ablB putative b 99.0 2.6E-09 5.5E-14 111.1 12.7 83 535-618 158-245 (266)
17 COG0456 RimI Acetyltransferase 99.0 3.1E-09 6.7E-14 101.4 12.0 112 494-618 26-154 (177)
18 PLN02706 glucosamine 6-phospha 99.0 8.5E-09 1.8E-13 96.6 14.0 103 508-617 32-143 (150)
19 cd02169 Citrate_lyase_ligase C 99.0 1.6E-09 3.6E-14 114.8 9.8 74 539-617 10-83 (297)
20 PRK10975 TDP-fucosamine acetyl 99.0 6.9E-09 1.5E-13 102.3 12.6 82 535-617 102-187 (194)
21 PRK03624 putative acetyltransf 98.9 3E-09 6.6E-14 96.5 9.1 83 535-618 45-130 (140)
22 PRK07757 acetyltransferase; Pr 98.9 6.5E-09 1.4E-13 97.6 10.6 81 538-621 44-125 (152)
23 PRK07922 N-acetylglutamate syn 98.9 5.1E-09 1.1E-13 101.8 10.1 79 537-618 47-127 (169)
24 TIGR01890 N-Ac-Glu-synth amino 98.9 1.1E-08 2.3E-13 113.6 13.2 80 538-619 325-406 (429)
25 PHA00673 acetyltransferase dom 98.9 2E-08 4.3E-13 97.0 11.4 85 535-620 55-148 (154)
26 KOG3139 N-acetyltransferase [G 98.8 1.9E-08 4.2E-13 96.7 10.0 81 537-618 58-146 (165)
27 PRK05279 N-acetylglutamate syn 98.8 1.6E-08 3.4E-13 112.6 10.8 80 537-618 336-417 (441)
28 PRK12308 bifunctional arginino 98.8 1.8E-08 4E-13 116.6 11.6 81 537-620 505-586 (614)
29 TIGR00124 cit_ly_ligase [citra 98.8 1.9E-08 4.1E-13 108.3 10.2 82 534-620 30-111 (332)
30 KOG0956 PHD finger protein AF1 98.8 4E-09 8.6E-14 118.5 3.7 112 338-450 7-188 (900)
31 KOG4443 Putative transcription 98.7 2.9E-09 6.2E-14 119.8 2.1 104 333-451 15-127 (694)
32 TIGR01686 FkbH FkbH-like domai 98.7 7.1E-08 1.5E-12 103.0 12.0 113 492-616 197-319 (320)
33 TIGR03448 mycothiol_MshD mycot 98.7 6.5E-08 1.4E-12 100.7 11.4 81 535-618 46-128 (292)
34 PRK10140 putative acetyltransf 98.7 1.4E-07 3.1E-12 88.5 11.7 84 535-620 51-143 (162)
35 TIGR02406 ectoine_EctA L-2,4-d 98.7 1.3E-07 2.9E-12 90.6 11.5 81 536-617 40-127 (157)
36 PRK09831 putative acyltransfer 98.7 6.2E-08 1.3E-12 91.1 9.0 74 537-620 55-128 (147)
37 PRK13688 hypothetical protein; 98.7 7.5E-08 1.6E-12 93.1 9.4 78 536-619 46-134 (156)
38 TIGR03103 trio_acet_GNAT GNAT- 98.7 1.2E-07 2.5E-12 108.6 12.4 112 491-617 93-216 (547)
39 COG3153 Predicted acetyltransf 98.7 2.3E-07 4.9E-12 91.1 12.5 116 490-620 12-133 (171)
40 TIGR03448 mycothiol_MshD mycot 98.7 2.1E-07 4.7E-12 96.8 12.5 74 543-617 208-287 (292)
41 KOG3396 Glucosamine-phosphate 98.6 1.7E-07 3.6E-12 87.9 8.9 81 536-617 53-143 (150)
42 PRK01346 hypothetical protein; 98.6 4.8E-07 1E-11 99.3 13.3 80 537-619 49-137 (411)
43 PHA01807 hypothetical protein 98.5 5.6E-07 1.2E-11 86.9 11.0 81 535-618 53-141 (153)
44 PF13420 Acetyltransf_4: Acety 98.5 7.5E-07 1.6E-11 83.4 11.1 81 537-619 53-140 (155)
45 PF13523 Acetyltransf_8: Acety 98.5 3.7E-07 8E-12 85.8 9.0 87 533-620 46-143 (152)
46 PRK10514 putative acetyltransf 98.4 8.2E-07 1.8E-11 82.4 9.1 89 537-632 52-141 (145)
47 smart00258 SAND SAND domain. 98.4 1.9E-07 4E-12 79.2 2.7 65 242-309 1-68 (73)
48 KOG3397 Acetyltransferases [Ge 98.4 1E-06 2.3E-11 85.6 7.9 82 541-624 63-147 (225)
49 KOG4299 PHD Zn-finger protein 98.4 1.3E-07 2.8E-12 106.5 1.8 44 336-379 47-93 (613)
50 cd04301 NAT_SF N-Acyltransfera 98.3 2.3E-06 5.1E-11 65.6 8.2 60 538-597 2-64 (65)
51 PRK15130 spermidine N1-acetylt 98.3 2.2E-06 4.8E-11 83.4 9.7 81 536-618 58-145 (186)
52 COG5141 PHD zinc finger-contai 98.3 1.6E-07 3.4E-12 102.6 1.4 91 332-422 189-337 (669)
53 PRK10562 putative acetyltransf 98.2 4.8E-06 1E-10 77.9 9.3 78 536-619 49-126 (145)
54 TIGR03585 PseH pseudaminic aci 98.2 9.2E-06 2E-10 76.0 10.8 81 537-620 53-140 (156)
55 PF08445 FR47: FR47-like prote 98.2 7.4E-06 1.6E-10 71.4 9.4 73 545-618 8-82 (86)
56 PF01342 SAND: SAND domain; I 98.2 1.3E-07 2.7E-12 82.3 -2.8 71 237-309 4-77 (82)
57 KOG3216 Diamine acetyltransfer 98.1 1.5E-05 3.2E-10 76.4 10.4 97 531-636 50-156 (163)
58 TIGR01211 ELP3 histone acetylt 98.1 5.9E-06 1.3E-10 94.0 9.0 76 543-619 422-517 (522)
59 COG3393 Predicted acetyltransf 98.1 6.5E-06 1.4E-10 85.2 8.3 80 537-617 179-261 (268)
60 PRK10809 ribosomal-protein-S5- 98.1 1.8E-05 4E-10 77.6 10.3 76 541-618 83-166 (194)
61 KOG0954 PHD finger protein [Ge 98.1 1E-06 2.3E-11 100.3 1.7 118 331-451 266-446 (893)
62 KOG4299 PHD Zn-finger protein 98.1 1E-06 2.2E-11 99.5 1.1 46 336-381 253-305 (613)
63 KOG0955 PHD finger protein BR1 98.0 2.3E-06 5E-11 102.7 3.2 54 332-385 215-281 (1051)
64 PRK10151 ribosomal-protein-L7/ 98.0 3.6E-05 7.8E-10 74.4 10.5 82 537-620 69-157 (179)
65 COG1247 Sortase and related ac 98.0 6.3E-05 1.4E-09 73.9 11.6 108 534-645 51-167 (169)
66 KOG0383 Predicted helicase [Ge 97.9 4.6E-06 1E-10 96.7 2.4 83 353-439 1-91 (696)
67 PF13302 Acetyltransf_3: Acety 97.9 8.4E-05 1.8E-09 68.0 10.1 78 535-614 56-142 (142)
68 KOG1973 Chromatin remodeling p 97.9 4.5E-06 9.8E-11 87.8 1.3 38 342-379 226-266 (274)
69 KOG0825 PHD Zn-finger protein 97.9 4.7E-06 1E-10 95.4 1.2 39 399-441 226-265 (1134)
70 PF00628 PHD: PHD-finger; Int 97.8 5.4E-06 1.2E-10 64.9 1.1 42 338-379 1-49 (51)
71 smart00249 PHD PHD zinc finger 97.8 1.3E-05 2.9E-10 60.3 2.8 41 338-378 1-47 (47)
72 PF00628 PHD: PHD-finger; Int 97.8 8.2E-06 1.8E-10 63.9 1.6 49 380-441 2-50 (51)
73 KOG4323 Polycomb-like PHD Zn-f 97.8 1.1E-05 2.4E-10 89.4 3.1 107 337-453 84-235 (464)
74 KOG1473 Nucleosome remodeling 97.8 5.4E-06 1.2E-10 98.0 0.6 113 332-446 340-483 (1414)
75 KOG3138 Predicted N-acetyltran 97.8 2.9E-05 6.2E-10 77.4 5.3 109 494-618 29-152 (187)
76 COG5034 TNG2 Chromatin remodel 97.7 1.6E-05 3.6E-10 81.4 2.4 42 337-379 222-268 (271)
77 KOG2488 Acetyltransferase (GNA 97.6 0.00045 9.8E-09 68.6 10.7 96 510-617 78-181 (202)
78 smart00249 PHD PHD zinc finger 97.6 4.1E-05 8.9E-10 57.6 2.1 45 380-437 2-46 (47)
79 KOG1512 PHD Zn-finger protein 97.5 3.2E-05 7E-10 80.2 1.9 44 333-376 311-357 (381)
80 PF13718 GNAT_acetyltr_2: GNAT 97.5 0.00012 2.7E-09 73.4 5.8 58 559-617 91-175 (196)
81 KOG1244 Predicted transcriptio 97.5 3.3E-05 7.2E-10 79.7 1.3 49 331-379 276-329 (336)
82 PF15446 zf-PHD-like: PHD/FYVE 97.5 6.2E-05 1.3E-09 73.1 3.0 85 338-422 1-143 (175)
83 PF14542 Acetyltransf_CG: GCN5 97.5 0.00053 1.1E-08 59.0 8.2 68 538-607 2-69 (78)
84 KOG3235 Subunit of the major N 97.5 0.00029 6.4E-09 68.1 6.9 80 538-617 44-134 (193)
85 KOG0383 Predicted helicase [Ge 97.4 4.7E-05 1E-09 88.6 1.0 51 331-381 42-94 (696)
86 KOG4443 Putative transcription 97.2 0.0001 2.2E-09 84.0 0.7 115 334-449 66-216 (694)
87 PF08444 Gly_acyl_tr_C: Aralky 97.2 0.00073 1.6E-08 59.7 5.8 73 539-617 3-79 (89)
88 PF12746 GNAT_acetyltran: GNAT 97.0 0.0037 8.1E-08 65.7 10.4 77 538-616 168-245 (265)
89 KOG0825 PHD Zn-finger protein 96.8 0.00049 1.1E-08 79.5 2.1 43 337-379 216-264 (1134)
90 KOG1973 Chromatin remodeling p 96.8 0.00045 9.8E-09 72.9 1.5 36 400-441 229-267 (274)
91 KOG4144 Arylalkylamine N-acety 96.8 0.0009 2E-08 64.5 3.1 60 558-618 101-161 (190)
92 COG0454 WecD Histone acetyltra 96.8 0.0015 3.3E-08 53.2 4.0 44 564-613 87-130 (156)
93 COG2388 Predicted acetyltransf 96.7 0.0042 9.2E-08 56.1 6.4 57 538-594 18-75 (99)
94 KOG0957 PHD finger protein [Ge 96.6 0.0008 1.7E-08 74.5 1.6 48 337-384 120-189 (707)
95 COG3981 Predicted acetyltransf 96.6 0.0074 1.6E-07 59.3 8.0 73 530-602 63-141 (174)
96 COG1670 RimL Acetyltransferase 96.5 0.017 3.8E-07 54.5 9.9 86 535-622 66-162 (187)
97 KOG3234 Acetyltransferase, (GN 96.5 0.0072 1.6E-07 58.7 7.0 74 542-616 49-129 (173)
98 PF13480 Acetyltransf_6: Acety 96.5 0.064 1.4E-06 48.8 13.1 83 512-600 54-136 (142)
99 COG1444 Predicted P-loop ATPas 96.5 0.0022 4.8E-08 75.6 4.1 57 559-617 532-590 (758)
100 COG3053 CitC Citrate lyase syn 96.5 0.011 2.5E-07 62.4 8.8 81 535-620 36-117 (352)
101 PF12568 DUF3749: Acetyltransf 96.3 0.033 7.1E-07 52.5 10.1 79 537-618 40-125 (128)
102 TIGR03694 exosort_acyl putativ 96.2 0.022 4.8E-07 59.1 9.2 93 526-619 47-201 (241)
103 cd04718 BAH_plant_2 BAH, or Br 96.1 0.0021 4.4E-08 61.9 1.1 26 412-441 1-26 (148)
104 COG5034 TNG2 Chromatin remodel 96.1 0.0025 5.3E-08 65.8 1.4 36 401-442 232-270 (271)
105 PF13831 PHD_2: PHD-finger; PD 96.0 0.00096 2.1E-08 49.4 -1.3 34 346-379 2-36 (36)
106 KOG0957 PHD finger protein [Ge 96.0 0.0022 4.8E-08 71.1 0.7 46 380-440 547-596 (707)
107 COG4552 Eis Predicted acetyltr 95.7 0.017 3.6E-07 62.5 5.6 78 538-618 42-127 (389)
108 PF00765 Autoind_synth: Autoin 95.5 0.11 2.4E-06 51.8 10.6 115 490-615 8-152 (182)
109 cd04718 BAH_plant_2 BAH, or Br 95.0 0.016 3.4E-07 55.9 2.7 30 357-386 1-32 (148)
110 PRK13834 putative autoinducer 95.0 0.15 3.3E-06 51.8 9.9 118 491-619 17-168 (207)
111 KOG1245 Chromatin remodeling c 94.9 0.0062 1.4E-07 76.5 -0.3 50 380-444 1111-1160(1404)
112 PF06852 DUF1248: Protein of u 94.7 0.17 3.6E-06 50.6 9.1 98 535-633 47-153 (181)
113 KOG0955 PHD finger protein BR1 93.9 0.025 5.4E-07 69.0 1.4 48 379-441 221-268 (1051)
114 COG1243 ELP3 Histone acetyltra 93.8 0.056 1.2E-06 60.4 3.8 51 567-618 459-509 (515)
115 KOG1245 Chromatin remodeling c 93.2 0.022 4.7E-07 71.9 -0.6 45 335-379 1107-1156(1404)
116 PF01233 NMT: Myristoyl-CoA:pr 92.6 1.1 2.3E-05 44.1 10.2 68 529-596 71-148 (162)
117 KOG4323 Polycomb-like PHD Zn-f 92.5 0.043 9.2E-07 61.6 0.6 43 337-379 169-222 (464)
118 TIGR03019 pepcterm_femAB FemAB 91.8 1.7 3.7E-05 46.7 11.7 97 513-617 181-280 (330)
119 KOG0956 PHD finger protein AF1 91.6 0.091 2E-06 60.8 1.8 37 399-441 18-56 (900)
120 COG5141 PHD zinc finger-contai 91.3 0.086 1.9E-06 59.0 1.2 46 380-440 196-241 (669)
121 KOG0954 PHD finger protein [Ge 90.7 0.1 2.3E-06 60.8 1.2 48 379-441 273-320 (893)
122 PF13832 zf-HC5HC2H_2: PHD-zin 89.7 0.18 4E-06 45.6 1.8 74 338-424 2-91 (110)
123 PF01853 MOZ_SAS: MOZ/SAS fami 89.5 1.1 2.3E-05 45.2 7.1 83 490-591 26-113 (188)
124 COG3818 Predicted acetyltransf 88.4 1 2.3E-05 42.8 5.8 67 556-622 82-152 (167)
125 COG5628 Predicted acetyltransf 88.0 2.7 5.9E-05 39.5 8.1 84 540-625 42-131 (143)
126 PF07227 DUF1423: Protein of u 87.8 0.4 8.6E-06 53.7 3.1 63 372-443 123-193 (446)
127 KOG4135 Predicted phosphogluco 87.2 1.3 2.9E-05 43.0 5.8 58 558-616 107-168 (185)
128 PF13880 Acetyltransf_13: ESCO 87.1 0.54 1.2E-05 40.0 2.8 28 560-587 7-34 (70)
129 PLN03238 probable histone acet 86.1 1.7 3.7E-05 46.3 6.5 48 544-591 140-188 (290)
130 KOG2535 RNA polymerase II elon 86.0 0.87 1.9E-05 49.5 4.3 50 569-619 498-548 (554)
131 PF13831 PHD_2: PHD-finger; PD 85.8 0.18 3.9E-06 37.4 -0.7 34 401-440 2-36 (36)
132 cd04264 DUF619-NAGS DUF619 dom 81.6 3.8 8.2E-05 37.1 5.9 45 542-586 15-62 (99)
133 PF13444 Acetyltransf_5: Acety 81.6 2.8 6.2E-05 37.4 5.1 46 535-580 30-100 (101)
134 PTZ00064 histone acetyltransfe 81.0 2.7 5.8E-05 47.9 5.7 83 490-591 330-417 (552)
135 KOG1081 Transcription factor N 81.0 1.3 2.8E-05 50.4 3.4 34 331-364 84-117 (463)
136 PF14446 Prok-RING_1: Prokaryo 80.7 0.85 1.8E-05 37.0 1.2 36 377-422 5-40 (54)
137 PLN03239 histone acetyltransfe 80.7 3.6 7.7E-05 45.1 6.3 32 560-591 215-246 (351)
138 PF02474 NodA: Nodulation prot 80.0 2.3 4.9E-05 42.3 4.1 53 558-612 85-137 (196)
139 PF04377 ATE_C: Arginine-tRNA- 79.5 10 0.00022 36.0 8.3 63 534-597 38-101 (128)
140 PF01429 MBD: Methyl-CpG bindi 79.2 1.9 4.1E-05 37.1 3.0 40 10-49 11-54 (77)
141 PLN00104 MYST -like histone ac 76.1 3.4 7.3E-05 46.8 4.6 58 534-591 277-339 (450)
142 PF14446 Prok-RING_1: Prokaryo 76.0 1.4 2.9E-05 35.8 1.1 28 337-364 6-37 (54)
143 PF13771 zf-HC5HC2H: PHD-like 73.7 1.8 3.8E-05 37.6 1.4 38 401-438 47-89 (90)
144 COG3916 LasI N-acyl-L-homoseri 72.4 24 0.00053 36.2 9.3 88 526-614 43-159 (209)
145 cd04265 DUF619-NAGS-U DUF619 d 71.6 9 0.0002 34.7 5.5 39 548-586 22-62 (99)
146 PRK14852 hypothetical protein; 69.9 14 0.0003 45.9 8.1 85 535-619 75-182 (989)
147 KOG2779 N-myristoyl transferas 68.2 32 0.00069 38.0 9.5 84 527-610 126-225 (421)
148 cd00122 MBD MeCP2, MBD1, MBD2, 67.6 6.7 0.00015 32.2 3.5 42 11-52 7-51 (62)
149 KOG2747 Histone acetyltransfer 64.8 8.5 0.00018 42.9 4.6 27 561-587 263-289 (396)
150 cd01396 MeCP2_MBD MeCP2, MBD1, 64.4 7.3 0.00016 33.7 3.2 42 10-51 7-51 (77)
151 COG2401 ABC-type ATPase fused 63.3 4.6 0.0001 45.5 2.2 58 558-616 241-306 (593)
152 COG5027 SAS2 Histone acetyltra 62.3 4.7 0.0001 44.0 2.0 74 490-582 208-286 (395)
153 PF13901 DUF4206: Domain of un 62.2 4.6 0.0001 40.9 1.9 33 398-443 167-199 (202)
154 PF07897 DUF1675: Protein of u 61.7 3.4 7.4E-05 44.2 0.8 31 266-296 252-283 (284)
155 PF11793 FANCL_C: FANCL C-term 59.7 3.6 7.8E-05 34.8 0.5 28 337-364 3-38 (70)
156 KOG1473 Nucleosome remodeling 56.5 5.4 0.00012 49.3 1.4 43 394-440 347-389 (1414)
157 PF15446 zf-PHD-like: PHD/FYVE 56.5 5.6 0.00012 39.4 1.2 24 399-422 13-36 (175)
158 COG5092 NMT1 N-myristoyl trans 54.9 47 0.001 36.2 7.8 122 491-617 91-238 (451)
159 smart00391 MBD Methyl-CpG bind 54.0 13 0.00028 32.1 3.0 41 10-50 8-52 (77)
160 KOG1829 Uncharacterized conser 53.8 5.8 0.00013 46.3 1.0 55 374-445 503-562 (580)
161 KOG2036 Predicted P-loop ATPas 53.1 12 0.00027 44.5 3.4 30 559-588 615-644 (1011)
162 PRK01305 arginyl-tRNA-protein 52.0 88 0.0019 32.8 9.3 61 536-597 145-206 (240)
163 PF13832 zf-HC5HC2H_2: PHD-zin 51.9 7 0.00015 35.3 1.1 29 336-364 55-86 (110)
164 PF09924 DUF2156: Uncharacteri 51.9 76 0.0017 33.5 9.1 66 534-601 179-248 (299)
165 PRK00756 acyltransferase NodA; 51.7 20 0.00044 35.6 4.2 46 558-604 85-130 (196)
166 PF04958 AstA: Arginine N-succ 51.0 25 0.00054 38.7 5.3 80 535-615 59-185 (342)
167 KOG3576 Ovo and related transc 50.5 3.8 8.3E-05 41.7 -0.9 66 346-420 115-190 (267)
168 TIGR03244 arg_catab_AstA argin 50.2 34 0.00074 37.6 6.1 48 535-582 55-141 (336)
169 TIGR03245 arg_AOST_alph argini 47.2 38 0.00081 37.3 5.9 48 535-582 56-142 (336)
170 PRK10456 arginine succinyltran 46.6 37 0.00081 37.4 5.7 48 535-582 57-143 (344)
171 TIGR03243 arg_catab_AOST argin 46.3 40 0.00087 37.0 5.9 82 535-617 55-183 (335)
172 PF10497 zf-4CXXC_R1: Zinc-fin 46.1 9.1 0.0002 35.0 0.9 33 355-387 37-80 (105)
173 COG5653 Protein involved in ce 46.0 1.1E+02 0.0025 34.3 9.4 93 502-601 246-338 (406)
174 KOG4628 Predicted E3 ubiquitin 45.7 16 0.00036 40.1 2.9 42 337-381 230-276 (348)
175 KOG1472 Histone acetyltransfer 44.8 5.3 0.00012 47.6 -1.1 110 527-637 410-524 (720)
176 TIGR03827 GNAT_ablB putative b 44.7 42 0.0009 35.0 5.6 43 574-617 21-63 (266)
177 PF13771 zf-HC5HC2H: PHD-like 44.0 13 0.00027 32.2 1.4 28 337-364 37-67 (90)
178 KOG2696 Histone acetyltransfer 42.7 51 0.0011 36.6 6.0 59 545-603 199-263 (403)
179 PF12261 T_hemolysin: Thermost 42.3 41 0.0009 33.7 4.9 55 558-617 87-141 (179)
180 PF00641 zf-RanBP: Zn-finger i 41.2 11 0.00024 26.4 0.5 10 370-379 2-11 (30)
181 PF13639 zf-RING_2: Ring finge 41.2 4.4 9.6E-05 30.6 -1.7 38 337-379 1-44 (44)
182 KOG1632 Uncharacterized PHD Zn 41.2 15 0.00034 40.3 1.8 61 402-466 74-136 (345)
183 smart00547 ZnF_RBZ Zinc finger 39.2 19 0.00041 24.1 1.4 9 371-379 1-9 (26)
184 COG3375 Uncharacterized conser 39.2 1.9E+02 0.0042 30.4 9.1 59 538-596 49-112 (266)
185 PF10497 zf-4CXXC_R1: Zinc-fin 39.1 10 0.00022 34.7 0.1 36 406-442 33-70 (105)
186 PF12861 zf-Apc11: Anaphase-pr 38.6 9.1 0.0002 33.9 -0.4 31 407-442 50-80 (85)
187 KOG1169 Diacylglycerol kinase 38.4 18 0.0004 42.6 1.9 76 337-420 117-211 (634)
188 PF13901 DUF4206: Domain of un 38.0 22 0.00048 36.1 2.3 28 337-364 153-188 (202)
189 PF04339 DUF482: Protein of un 37.4 1.4E+02 0.0031 33.3 8.5 93 503-597 14-139 (370)
190 PF11793 FANCL_C: FANCL C-term 37.2 18 0.0004 30.5 1.3 34 379-420 4-39 (70)
191 PF07649 C1_3: C1-like domain; 37.0 11 0.00024 26.4 -0.0 28 380-418 3-30 (30)
192 KOG1701 Focal adhesion adaptor 36.9 25 0.00054 39.6 2.6 61 353-420 351-430 (468)
193 COG2898 Uncharacterized conser 36.1 81 0.0018 36.9 6.6 66 535-601 393-460 (538)
194 KOG3612 PHD Zn-finger protein 31.4 43 0.00092 38.9 3.3 44 336-379 60-106 (588)
195 KOG1246 DNA-binding protein ju 31.1 47 0.001 41.1 4.0 51 335-385 154-208 (904)
196 KOG2752 Uncharacterized conser 30.6 39 0.00085 36.7 2.7 23 399-421 144-167 (345)
197 PF05301 Mec-17: Touch recepto 29.9 1E+02 0.0022 29.2 5.0 64 564-634 52-116 (120)
198 PF14569 zf-UDP: Zinc-binding 28.2 20 0.00043 31.3 0.0 57 379-449 11-67 (80)
199 KOG1701 Focal adhesion adaptor 28.1 8.8 0.00019 43.0 -2.6 69 337-419 275-362 (468)
200 PF12861 zf-Apc11: Anaphase-pr 27.6 24 0.00052 31.3 0.5 44 335-379 20-78 (85)
201 PF07395 Mig-14: Mig-14; Inte 27.3 1.2E+02 0.0025 32.4 5.5 62 535-596 173-242 (264)
202 KOG1246 DNA-binding protein ju 27.2 36 0.00079 42.1 2.1 35 404-442 170-204 (904)
203 KOG3612 PHD Zn-finger protein 26.8 33 0.00072 39.7 1.5 40 399-441 68-107 (588)
204 PF11124 Pho86: Inorganic phos 26.7 1.8E+02 0.0038 31.7 6.8 81 535-617 170-270 (304)
205 PF11238 DUF3039: Protein of u 25.9 41 0.00088 27.8 1.4 18 429-447 41-58 (58)
206 PF12678 zf-rbx1: RING-H2 zinc 25.7 24 0.00052 30.0 0.1 27 349-379 45-73 (73)
207 COG3882 FkbH Predicted enzyme 25.6 56 0.0012 37.7 3.0 71 543-614 471-546 (574)
208 COG0143 MetG Methionyl-tRNA sy 25.5 41 0.00088 39.5 2.0 36 372-420 126-172 (558)
209 PF04339 DUF482: Protein of un 25.2 5.9E+02 0.013 28.5 10.8 78 535-617 251-328 (370)
210 KOG0804 Cytoplasmic Zn-finger 22.3 40 0.00086 38.3 1.0 77 335-420 174-254 (493)
211 COG3138 AstA Arginine/ornithin 22.0 74 0.0016 34.4 2.9 46 535-580 57-141 (336)
212 PRK02983 lysS lysyl-tRNA synth 21.9 3.1E+02 0.0067 35.0 8.7 60 541-601 427-487 (1094)
213 cd01395 HMT_MBD Methyl-CpG bin 21.9 1.1E+02 0.0023 25.5 3.2 36 11-46 7-44 (60)
214 PRK14891 50S ribosomal protein 21.3 35 0.00077 32.4 0.3 36 425-469 23-58 (131)
215 COG3024 Uncharacterized protei 20.1 53 0.0012 27.7 1.1 19 425-443 19-37 (65)
No 1
>PRK10314 putative acyltransferase; Provisional
Probab=99.44 E-value=5.7e-13 Score=127.64 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=85.3
Q ss_pred eEEEEEeeCCeEEEEEEEEEe-C--ceeeEeEEEeccCcccCChHHHHHHHHHHHHHHc-CCcEEEEcCccchHHHhHhc
Q 044767 535 FYTVVLEKKRKIISAATVRVY-E--KVAEIPFVATMFKYRRNGMCRLLMAELEKQLIAL-GVERLVLPSAPSVLNAWTTK 610 (656)
Q Consensus 535 ~y~~VLe~dg~iVg~a~lr~~-~--~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~-gv~~l~L~A~~~a~~fw~~k 610 (656)
.+|+++..++++||+++++.. . ..++|.+|+|+|+|||+|+|+.||+++++.++.. +...+.|.|+..|.+||+ +
T Consensus 48 ~~h~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~-k 126 (153)
T PRK10314 48 NRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQ-S 126 (153)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHH-H
Confidence 677888889999999998765 2 2578999999999999999999999999998875 788999999999999999 7
Q ss_pred CCceecChHHHhccccceeEe
Q 044767 611 FGFSKMTASERLNYLNYTFLD 631 (656)
Q Consensus 611 fGF~~~~~~~~~~~~~~~~m~ 631 (656)
|||..+++......+.|..|.
T Consensus 127 ~GF~~~g~~f~~~Gi~h~~M~ 147 (153)
T PRK10314 127 FGFIPVTEVYEEDGIPHIGMA 147 (153)
T ss_pred CCCEECCCccccCCCCcHhhh
Confidence 999999998888888877665
No 2
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.35 E-value=1.4e-13 Score=139.81 Aligned_cols=92 Identities=29% Similarity=0.754 Sum_probs=79.6
Q ss_pred cccccccc----------CCceEeecCCCCccCCCCcCC-----CCCCCCCCcCCCCC-ccccCCCCCCCCccccccCCC
Q 044767 337 DMCVVCLD----------GGELICCDHCPCMYHSSCLGL-----KDIPYGDWFCPLCC-CAICGDGKFKQRTLHSVDDDD 400 (656)
Q Consensus 337 d~C~vC~d----------gGeLl~Cd~CprafH~~Cl~l-----~~~p~g~W~C~~C~-C~iCg~~~~~~~~~~~v~~~~ 400 (656)
.+|-.|.. +.+|+.|..|+++=|++||.. ..+....|.|..|. |.+||.++ ++
T Consensus 225 ~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtse-----------nd 293 (336)
T KOG1244|consen 225 PYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSE-----------ND 293 (336)
T ss_pred cccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcC-----------CC
Confidence 45777753 246999999999999999984 36778899999998 89999976 66
Q ss_pred CccccccccccccccccccccccceeeccCCcccccchhhhhH
Q 044767 401 GLVRTCDQCEHKFHTGCTRKSKRELKVKSQNKWFCSDRCEHVF 443 (656)
Q Consensus 401 ~~ll~CdqC~r~yH~~Cl~~~~~~l~~~p~g~WfC~~~C~~i~ 443 (656)
+.|++||.|+|.||++||.| +|.+.|+|.|-|.. |-+.+
T Consensus 294 dqllfcddcdrgyhmyclsp---pm~eppegswsc~K-OG~~~ 332 (336)
T KOG1244|consen 294 DQLLFCDDCDRGYHMYCLSP---PMVEPPEGSWSCHL-CLEEL 332 (336)
T ss_pred ceeEeecccCCceeeEecCC---CcCCCCCCchhHHH-HHHHH
Confidence 78999999999999999999 89999999999997 76643
No 3
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.27 E-value=2.9e-11 Score=102.12 Aligned_cols=77 Identities=22% Similarity=0.324 Sum_probs=68.5
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCce
Q 044767 535 FYTVVLEKKRKIISAATVRVYEKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFS 614 (656)
Q Consensus 535 ~y~~VLe~dg~iVg~a~lr~~~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~ 614 (656)
.+++++++++++||++.++...+.+.|..++|+|+|||+|+|+.||+.+.+.+ +...++|.+.+.+.+||+ ++||+
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~---~~~~i~l~~~~~~~~fY~-~~GF~ 78 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNEDFAYIGYLAVDPEYRGKGIGSKLLNYLLEKA---KSKKIFLFTNPAAIKFYE-KLGFE 78 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTEEEEEEEEE-GGGTTSSHHHHHHHHHHHHH---TCSEEEEEEEHHHHHHHH-HTTEE
T ss_pred cEEEEEEECCEEEEEEEEEEcCCEEEEEEEEECHHHcCCCHHHHHHHHHHHHc---CCCcEEEEEcHHHHHHHH-HCcCC
Confidence 46788999999999999977777999999999999999999999999998888 446788989999999999 79998
Q ss_pred e
Q 044767 615 K 615 (656)
Q Consensus 615 ~ 615 (656)
+
T Consensus 79 ~ 79 (79)
T PF13508_consen 79 E 79 (79)
T ss_dssp E
T ss_pred C
Confidence 5
No 4
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.24 E-value=8.2e-11 Score=105.81 Aligned_cols=112 Identities=22% Similarity=0.326 Sum_probs=88.9
Q ss_pred HhhHHHHHhhhcCCCCCCCchhhhHHHHHhhhccccccccccceEEEEEeeCCeEEEEEEEEEeCceeeEeEEEeccCcc
Q 044767 492 LHGAVEVMHECFEPAKEPLTGRDLIEDVIFNRRSELKHLNYVGFYTVVLEKKRKIISAATVRVYEKVAEIPFVATMFKYR 571 (656)
Q Consensus 492 l~~al~I~~e~F~Pi~dp~s~~dl~~~~v~n~~s~~~r~~~~g~y~~VLe~dg~iVg~a~lr~~~~~AEI~~VAv~~~yR 571 (656)
+..++++..+.| ..||+...+...+.. ....+++++.++++||++.++...+...|..++|+|+||
T Consensus 2 ~~~i~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~vg~~~~~~~~~~~~i~~~~v~~~~r 67 (131)
T TIGR01575 2 LKAVLEIEAAAF---AFPWTEAQFAEELAN-----------YHLCYLLARIGGKVVGYAGVQIVLDEAHILNIAVKPEYQ 67 (131)
T ss_pred HHHHHHHHHhhC---CCCCCHHHHHHHhcC-----------CCceEEEEecCCeEEEEEEEEecCCCeEEEEEEECHHHc
Confidence 345678888999 447776666554421 113445667789999999987766677899999999999
Q ss_pred cCChHHHHHHHHHHHHHHcCCcEEEEc---CccchHHHhHhcCCceecCh
Q 044767 572 RNGMCRLLMAELEKQLIALGVERLVLP---SAPSVLNAWTTKFGFSKMTA 618 (656)
Q Consensus 572 gqG~Gr~Lm~~lE~~l~~~gv~~l~L~---A~~~a~~fw~~kfGF~~~~~ 618 (656)
|+|+|+.||+++++.+...|...+++. ....+..||+ ++||+..+.
T Consensus 68 g~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~-~~Gf~~~~~ 116 (131)
T TIGR01575 68 GQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYK-KLGFNEIAI 116 (131)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHH-HcCCCcccc
Confidence 999999999999999999999999984 4556889999 799998764
No 5
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.23 E-value=2.3e-11 Score=114.69 Aligned_cols=99 Identities=11% Similarity=0.005 Sum_probs=86.4
Q ss_pred eEEEEEee-CCeEEEEEEEEEe-C--ceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcC-CcEEEEcCccchHHHhHh
Q 044767 535 FYTVVLEK-KRKIISAATVRVY-E--KVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALG-VERLVLPSAPSVLNAWTT 609 (656)
Q Consensus 535 ~y~~VLe~-dg~iVg~a~lr~~-~--~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~g-v~~l~L~A~~~a~~fw~~ 609 (656)
..|+.+.. +|++|+||++-.. . ..+.|+||+|.|++||+|+|+.||....+.+.... -+.++|.||.++.+||.
T Consensus 49 ~~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa- 127 (155)
T COG2153 49 TRHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYA- 127 (155)
T ss_pred cceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHH-
Confidence 55677666 9999999987665 3 33569999999999999999999999999998875 67799999999999999
Q ss_pred cCCceecChHHHhccccceeEeeCC
Q 044767 610 KFGFSKMTASERLNYLNYTFLDFQG 634 (656)
Q Consensus 610 kfGF~~~~~~~~~~~~~~~~m~F~g 634 (656)
+|||.+++++..+..+.|.=|.++.
T Consensus 128 ~~GFv~~~e~yledGIpHv~M~r~~ 152 (155)
T COG2153 128 SFGFVRVGEEYLEDGIPHVGMIREV 152 (155)
T ss_pred HhCcEEcCchhhcCCCCchhhhhcc
Confidence 6999999999999999998887754
No 6
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.20 E-value=1.8e-10 Score=106.50 Aligned_cols=84 Identities=13% Similarity=0.082 Sum_probs=72.0
Q ss_pred EEEEEeeCCeEEEEEEEEEe-C-----ceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCc---cchHHH
Q 044767 536 YTVVLEKKRKIISAATVRVY-E-----KVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSA---PSVLNA 606 (656)
Q Consensus 536 y~~VLe~dg~iVg~a~lr~~-~-----~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~---~~a~~f 606 (656)
.++|++.++++||++.+... . ..++|..++|+|+|||+|+|+.||..+++.+++.|+..+.|.+. ..|..|
T Consensus 48 ~~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~f 127 (144)
T PRK10146 48 RYHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRF 127 (144)
T ss_pred eEEEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHH
Confidence 45677889999999998764 1 14689999999999999999999999999999999999999876 489999
Q ss_pred hHhcCCceecChHH
Q 044767 607 WTTKFGFSKMTASE 620 (656)
Q Consensus 607 w~~kfGF~~~~~~~ 620 (656)
|+ ++||...+-..
T Consensus 128 Y~-~~Gf~~~~~~~ 140 (144)
T PRK10146 128 YL-REGYEQSHFRF 140 (144)
T ss_pred HH-HcCCchhhhhh
Confidence 99 79998865443
No 7
>PLN02825 amino-acid N-acetyltransferase
Probab=99.18 E-value=1.7e-10 Score=130.07 Aligned_cols=89 Identities=28% Similarity=0.423 Sum_probs=78.8
Q ss_pred EEEEeeCCeEEEEEEEEEe--CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCce
Q 044767 537 TVVLEKKRKIISAATVRVY--EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFS 614 (656)
Q Consensus 537 ~~VLe~dg~iVg~a~lr~~--~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~ 614 (656)
++|++.||+|||++.+..+ .+.+||..|||+|+|||+|+|+.||+++|+.|+++|+++|+|.+ ..+..||+ ++||.
T Consensus 409 f~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~-k~GF~ 486 (515)
T PLN02825 409 FVVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFV-RRGFS 486 (515)
T ss_pred EEEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHH-HCCCE
Confidence 4678999999999998877 46899999999999999999999999999999999999999987 46788998 79999
Q ss_pred ecC----hHHHhccccc
Q 044767 615 KMT----ASERLNYLNY 627 (656)
Q Consensus 615 ~~~----~~~~~~~~~~ 627 (656)
..+ |.+++..+++
T Consensus 487 ~~~~~~lp~~~~~~yn~ 503 (515)
T PLN02825 487 ECSIESLPEARRKRINL 503 (515)
T ss_pred EeChhhCCHHHHhhcCc
Confidence 977 5667777764
No 8
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.17 E-value=1.9e-10 Score=96.41 Aligned_cols=74 Identities=27% Similarity=0.372 Sum_probs=66.9
Q ss_pred EeeCCeEEEEEEEEEe-C-----ceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCcc---chHHHhHhc
Q 044767 540 LEKKRKIISAATVRVY-E-----KVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAP---SVLNAWTTK 610 (656)
Q Consensus 540 Le~dg~iVg~a~lr~~-~-----~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~---~a~~fw~~k 610 (656)
++++|+|||++.++.. . ..+.|..++|+|+|||+|+|+.||+.+++.+++.|+..|.+.... .+.+||+ +
T Consensus 1 ~~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~-k 79 (83)
T PF00583_consen 1 AEEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYE-K 79 (83)
T ss_dssp EEETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHH-H
T ss_pred CcCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHH-H
Confidence 3689999999999998 4 489999999999999999999999999999999999999986665 4569999 7
Q ss_pred CCce
Q 044767 611 FGFS 614 (656)
Q Consensus 611 fGF~ 614 (656)
+||+
T Consensus 80 ~Gf~ 83 (83)
T PF00583_consen 80 LGFE 83 (83)
T ss_dssp TTEE
T ss_pred cCCC
Confidence 9996
No 9
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.16 E-value=6.8e-11 Score=113.06 Aligned_cols=80 Identities=21% Similarity=0.384 Sum_probs=71.7
Q ss_pred EEEeeCCeEEEEEEEEE-e-CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCcee
Q 044767 538 VVLEKKRKIISAATVRV-Y-EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFSK 615 (656)
Q Consensus 538 ~VLe~dg~iVg~a~lr~-~-~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~~ 615 (656)
.|++++|.+|||+.+.. . .+++||..|||+|+|||+|+|..||..++..|+++|++++++-+. .+..|+. ++||+.
T Consensus 43 ~i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt-~~~~~F~-~~GF~~ 120 (153)
T COG1246 43 TIIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT-RSPEFFA-ERGFTR 120 (153)
T ss_pred eeeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec-ccHHHHH-HcCCeE
Confidence 47788999999999994 5 899999999999999999999999999999999999999999997 4444555 799999
Q ss_pred cChH
Q 044767 616 MTAS 619 (656)
Q Consensus 616 ~~~~ 619 (656)
++.+
T Consensus 121 vd~~ 124 (153)
T COG1246 121 VDKD 124 (153)
T ss_pred Cccc
Confidence 9853
No 10
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.14 E-value=1.8e-10 Score=102.56 Aligned_cols=74 Identities=26% Similarity=0.389 Sum_probs=65.3
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCc
Q 044767 535 FYTVVLEKKRKIISAATVRVYEKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGF 613 (656)
Q Consensus 535 ~y~~VLe~dg~iVg~a~lr~~~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF 613 (656)
..++|++.+|+|||++.+. ..++|..+.|+|+|||+|+|+.||+.+++.++. |++.+++.+...|.+||+ ++||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~---~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~-~~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE---PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYR-KLGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE---TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHH-HTT-
T ss_pred CEEEEEEECCEEEEEEEEc---CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHH-hCCC
Confidence 4678899999999999875 456699999999999999999999999999977 999999999999999999 7998
No 11
>PTZ00330 acetyltransferase; Provisional
Probab=99.11 E-value=8.3e-10 Score=102.39 Aligned_cols=83 Identities=22% Similarity=0.315 Sum_probs=72.2
Q ss_pred EEEEEeeCCeEEEEEEEEEeC-------ceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhH
Q 044767 536 YTVVLEKKRKIISAATVRVYE-------KVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWT 608 (656)
Q Consensus 536 y~~VLe~dg~iVg~a~lr~~~-------~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~ 608 (656)
..++.+.+|++||++.+.... ..++|..+.|+|+|||+|+|+.||..+++.+++.|+.+++|.+...|..||+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 345566789999999886531 2468888999999999999999999999999999999999999999999999
Q ss_pred hcCCceecChH
Q 044767 609 TKFGFSKMTAS 619 (656)
Q Consensus 609 ~kfGF~~~~~~ 619 (656)
++||+.....
T Consensus 133 -k~GF~~~~~~ 142 (147)
T PTZ00330 133 -KLGFRACERQ 142 (147)
T ss_pred -HCCCEEeceE
Confidence 7999987744
No 12
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.10 E-value=2.6e-11 Score=124.25 Aligned_cols=90 Identities=26% Similarity=0.526 Sum_probs=77.4
Q ss_pred cccccccccCC---------ceEeecCCCCccCCCCcCCC-----CCCCCCCcCCCCC-ccccCCCCCCCCccccccCCC
Q 044767 336 YDMCVVCLDGG---------ELICCDHCPCMYHSSCLGLK-----DIPYGDWFCPLCC-CAICGDGKFKQRTLHSVDDDD 400 (656)
Q Consensus 336 dd~C~vC~dgG---------eLl~Cd~CprafH~~Cl~l~-----~~p~g~W~C~~C~-C~iCg~~~~~~~~~~~v~~~~ 400 (656)
...|.+|.++- .+++|..|-.++|+.|+.+. .+....|.|..|. |.+|+.+. .+
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~-----------~E 326 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPV-----------IE 326 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcc-----------cc
Confidence 35699998753 38999999999999999853 4667899999998 99999986 56
Q ss_pred CccccccccccccccccccccccceeeccCCcccccchhhh
Q 044767 401 GLVRTCDQCEHKFHTGCTRKSKRELKVKSQNKWFCSDRCEH 441 (656)
Q Consensus 401 ~~ll~CdqC~r~yH~~Cl~~~~~~l~~~p~g~WfC~~~C~~ 441 (656)
..+++||.|+|.||..|.. |..+|.|.|.|--.|..
T Consensus 327 ~E~~FCD~CDRG~HT~CVG-----L~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 327 SEHLFCDVCDRGPHTLCVG-----LQDLPRGEWICDMRCRE 362 (381)
T ss_pred hheeccccccCCCCccccc-----cccccCccchhhhHHHH
Confidence 7799999999999999985 57789999999987865
No 13
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.07 E-value=2.4e-09 Score=97.26 Aligned_cols=111 Identities=27% Similarity=0.280 Sum_probs=79.4
Q ss_pred HHhhHHHHHhhhcCCCCCCCchhhhHHHHHhhhccccccccccceEEEEEeeCCeEEEEEEEEEe----C----ceeeEe
Q 044767 491 KLHGAVEVMHECFEPAKEPLTGRDLIEDVIFNRRSELKHLNYVGFYTVVLEKKRKIISAATVRVY----E----KVAEIP 562 (656)
Q Consensus 491 kl~~al~I~~e~F~Pi~dp~s~~dl~~~~v~n~~s~~~r~~~~g~y~~VLe~dg~iVg~a~lr~~----~----~~AEI~ 562 (656)
-+.++.++..++|. +..+..+..... .+. +....+++++++|+|||.+.+... . ..+.|.
T Consensus 9 d~~~i~~l~~~~F~---~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~ 76 (127)
T PF13527_consen 9 DFEQIIELFNEAFG---DSESPPEIWEYF-RNL--------YGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIG 76 (127)
T ss_dssp GHHHHHHHHHHHTT---T-CHHHHHHHHH-HHH--------HHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHCC---CCCCchhhhhhh-hcc--------cCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEE
Confidence 45567788899993 322222111111 111 111357888889999999988654 1 357899
Q ss_pred EEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCceec
Q 044767 563 FVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFSKM 616 (656)
Q Consensus 563 ~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~~~ 616 (656)
-|+|+|+|||+|+|+.||+++++.+++.|+.-++|-+ ...+||. +|||+.+
T Consensus 77 ~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~-~~G~~~~ 127 (127)
T PF13527_consen 77 DVAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYR-RFGFEYA 127 (127)
T ss_dssp EEEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHH-HTTEEEE
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhh-cCCCEEC
Confidence 9999999999999999999999999999999999987 4578998 7999863
No 14
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.02 E-value=3e-09 Score=104.81 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=69.5
Q ss_pred EEEeeCCeEEEEEEEEEe-CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCc---cchHHHhHhcCCc
Q 044767 538 VVLEKKRKIISAATVRVY-EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSA---PSVLNAWTTKFGF 613 (656)
Q Consensus 538 ~VLe~dg~iVg~a~lr~~-~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~---~~a~~fw~~kfGF 613 (656)
++++.+|++||++.+... ...++|..++|.|+|||+|+|+.||++++++++++|+.+|.+... ..|..||+ ++||
T Consensus 102 i~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~-klGF 180 (191)
T TIGR02382 102 ILRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYI-RSGA 180 (191)
T ss_pred EEEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH-HcCC
Confidence 455678999999999877 567899999999999999999999999999999999999999743 46899999 7999
Q ss_pred eecC
Q 044767 614 SKMT 617 (656)
Q Consensus 614 ~~~~ 617 (656)
+...
T Consensus 181 ~~~~ 184 (191)
T TIGR02382 181 NIES 184 (191)
T ss_pred cccc
Confidence 8654
No 15
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.01 E-value=4.6e-09 Score=98.13 Aligned_cols=83 Identities=23% Similarity=0.342 Sum_probs=71.0
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcC---ccchHHHhHhcC
Q 044767 535 FYTVVLEKKRKIISAATVRVYEKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPS---APSVLNAWTTKF 611 (656)
Q Consensus 535 ~y~~VLe~dg~iVg~a~lr~~~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A---~~~a~~fw~~kf 611 (656)
++.++++.++++||++.+....+.+.+..|+|.|+|||+|+|+.||+.+++.+...|+..+.+.. -..+..||+ ++
T Consensus 40 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~-k~ 118 (146)
T PRK09491 40 YLNLKLTVNGQMAAFAITQVVLDEATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYE-SL 118 (146)
T ss_pred ceEEEEEECCeEEEEEEEEeecCceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHH-Hc
Confidence 44456678899999998877656678889999999999999999999999999999999988853 457889999 79
Q ss_pred CceecCh
Q 044767 612 GFSKMTA 618 (656)
Q Consensus 612 GF~~~~~ 618 (656)
||+..+.
T Consensus 119 Gf~~~~~ 125 (146)
T PRK09491 119 GFNEVTI 125 (146)
T ss_pred CCEEeee
Confidence 9998764
No 16
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.01 E-value=2.6e-09 Score=111.08 Aligned_cols=83 Identities=23% Similarity=0.340 Sum_probs=71.8
Q ss_pred eEEEEEeeCCeEEEEEEEEEe--CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccc---hHHHhHh
Q 044767 535 FYTVVLEKKRKIISAATVRVY--EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPS---VLNAWTT 609 (656)
Q Consensus 535 ~y~~VLe~dg~iVg~a~lr~~--~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~---a~~fw~~ 609 (656)
..+++++.+|++||++.+.+. ...++|..++|+|+|||+|+|+.||+.+++.+++.|+..+++.+... +..+|.
T Consensus 158 ~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~- 236 (266)
T TIGR03827 158 VVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFA- 236 (266)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHH-
Confidence 456677889999999988654 46789999999999999999999999999999999999999977654 466898
Q ss_pred cCCceecCh
Q 044767 610 KFGFSKMTA 618 (656)
Q Consensus 610 kfGF~~~~~ 618 (656)
++||+..+.
T Consensus 237 k~GF~~~G~ 245 (266)
T TIGR03827 237 RLGYAYGGT 245 (266)
T ss_pred HcCCccccE
Confidence 799998764
No 17
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.00 E-value=3.1e-09 Score=101.42 Aligned_cols=112 Identities=21% Similarity=0.303 Sum_probs=90.3
Q ss_pred hHHHHHhhhcCCCCCCCchhhhHHHHHhhhccccccccccceEEEEEee---CC----eEEEEEEEEEeCc------eee
Q 044767 494 GAVEVMHECFEPAKEPLTGRDLIEDVIFNRRSELKHLNYVGFYTVVLEK---KR----KIISAATVRVYEK------VAE 560 (656)
Q Consensus 494 ~al~I~~e~F~Pi~dp~s~~dl~~~~v~n~~s~~~r~~~~g~y~~VLe~---dg----~iVg~a~lr~~~~------~AE 560 (656)
.++.++...|... .||+...+...+.... ...+|... ++ +++|+...+...+ .++
T Consensus 26 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~-----------~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 93 (177)
T COG0456 26 ALAALEARTFDIR-LPWSREYFEKDLTQAP-----------ELLLVAETGGLDGLLDGKVVGFLLVRVVDGRPSADHEGH 93 (177)
T ss_pred HHHHHhhhcCCCC-CcchHHHHHHHHhhCc-----------ceeEEEEecccCCCcccceeEEEEEEEecCCccccCccE
Confidence 6778888999533 7899888887775443 23344444 33 5999999986633 899
Q ss_pred EeEEEeccCcccCChHHHHHHHHHHHHHHcCC-cEEEEcCcc---chHHHhHhcCCceecCh
Q 044767 561 IPFVATMFKYRRNGMCRLLMAELEKQLIALGV-ERLVLPSAP---SVLNAWTTKFGFSKMTA 618 (656)
Q Consensus 561 I~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv-~~l~L~A~~---~a~~fw~~kfGF~~~~~ 618 (656)
|..|||+|+|||+|+|+.||+++++.+.+.+. ..+.|.... .|+.||+ ++||+.+..
T Consensus 94 i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~-~~GF~~~~~ 154 (177)
T COG0456 94 IYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYR-KLGFEVVKI 154 (177)
T ss_pred EEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHH-HcCCEEEee
Confidence 99999999999999999999999999999986 888887774 6899999 799998764
No 18
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.99 E-value=8.5e-09 Score=96.58 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=77.7
Q ss_pred CCCchhhhHHHHHhhhccccccccccceEEEEEee--CCeEEEEEEEEEe-------CceeeEeEEEeccCcccCChHHH
Q 044767 508 EPLTGRDLIEDVIFNRRSELKHLNYVGFYTVVLEK--KRKIISAATVRVY-------EKVAEIPFVATMFKYRRNGMCRL 578 (656)
Q Consensus 508 dp~s~~dl~~~~v~n~~s~~~r~~~~g~y~~VLe~--dg~iVg~a~lr~~-------~~~AEI~~VAv~~~yRgqG~Gr~ 578 (656)
.+++..++...+...... +. ..+.++++. +++|||++.+.+. ...+.|..++|+|+|||+|+|+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ 105 (150)
T PLN02706 32 GDVTEEEFEARFQELASL-----GD-DHLICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKK 105 (150)
T ss_pred CCCCHHHHHHHHHHHHhC-----CC-cEEEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHH
Confidence 467766665544221110 11 133455555 6899999988532 24567777999999999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCceecC
Q 044767 579 LMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFSKMT 617 (656)
Q Consensus 579 Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~~~~ 617 (656)
||+.++++|+++|+++|.|.......+||+ ++||...+
T Consensus 106 ll~~~~~~a~~~g~~~i~l~~~~~N~~~y~-k~GF~~~g 143 (150)
T PLN02706 106 IIEALTEHARSAGCYKVILDCSEENKAFYE-KCGYVRKE 143 (150)
T ss_pred HHHHHHHHHHHcCCCEEEEEeccccHHHHH-HCcCEEeh
Confidence 999999999999999999999888899999 79999764
No 19
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.98 E-value=1.6e-09 Score=114.79 Aligned_cols=74 Identities=19% Similarity=0.367 Sum_probs=67.8
Q ss_pred EEeeCCeEEEEEEEEEeCceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCceecC
Q 044767 539 VLEKKRKIISAATVRVYEKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFSKMT 617 (656)
Q Consensus 539 VLe~dg~iVg~a~lr~~~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~~~~ 617 (656)
|.+++|++||++++.. .+|..|||+|+|||+|+|+.||+++++.+++.|++.++|.+...+.+||+ ++||+.++
T Consensus 10 v~~~~~~iVG~~~l~~----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYe-k~GF~~~~ 83 (297)
T cd02169 10 IFDDAGELIATGSIAG----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFR-GLGFKELA 83 (297)
T ss_pred EEEECCEEEEEEEecc----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHH-HCCCEEec
Confidence 4467799999998753 46999999999999999999999999999999999999999999999999 79999888
No 20
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.95 E-value=6.9e-09 Score=102.26 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=69.9
Q ss_pred eEEEEEeeCCeEEEEEEEEEe-CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCc---cchHHHhHhc
Q 044767 535 FYTVVLEKKRKIISAATVRVY-EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSA---PSVLNAWTTK 610 (656)
Q Consensus 535 ~y~~VLe~dg~iVg~a~lr~~-~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~---~~a~~fw~~k 610 (656)
.+.++.+.+|++||++.+... ...++|..++|.|+|||||+|+.||..+++++++.|++++++... ..+..||+ +
T Consensus 102 ~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~ye-k 180 (194)
T PRK10975 102 QCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYI-R 180 (194)
T ss_pred cEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHH-H
Confidence 333444567899999998876 566899999999999999999999999999999999999988754 46889999 7
Q ss_pred CCceecC
Q 044767 611 FGFSKMT 617 (656)
Q Consensus 611 fGF~~~~ 617 (656)
+||+..+
T Consensus 181 ~Gf~~~~ 187 (194)
T PRK10975 181 SGANIES 187 (194)
T ss_pred CCCeEeE
Confidence 9999865
No 21
>PRK03624 putative acetyltransferase; Provisional
Probab=98.95 E-value=3e-09 Score=96.50 Aligned_cols=83 Identities=23% Similarity=0.309 Sum_probs=70.1
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCc---cchHHHhHhcC
Q 044767 535 FYTVVLEKKRKIISAATVRVYEKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSA---PSVLNAWTTKF 611 (656)
Q Consensus 535 ~y~~VLe~dg~iVg~a~lr~~~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~---~~a~~fw~~kf 611 (656)
.+++++..++++||++.+....+.+.+..|+|+|+|||+|+|+.||..+++.++..|++.+.+.+. ..+..+|+ ++
T Consensus 45 ~~~~v~~~~~~~vG~~~~~~~~~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~-k~ 123 (140)
T PRK03624 45 SLFLVAEVGGEVVGTVMGGYDGHRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYE-AL 123 (140)
T ss_pred ceEEEEEcCCcEEEEEEeeccCCCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHH-Hc
Confidence 356677888999999887644555778889999999999999999999999999999999888655 45889998 79
Q ss_pred CceecCh
Q 044767 612 GFSKMTA 618 (656)
Q Consensus 612 GF~~~~~ 618 (656)
||+..+.
T Consensus 124 GF~~~~~ 130 (140)
T PRK03624 124 GYEEQDR 130 (140)
T ss_pred CCccccE
Confidence 9997653
No 22
>PRK07757 acetyltransferase; Provisional
Probab=98.92 E-value=6.5e-09 Score=97.60 Aligned_cols=81 Identities=25% Similarity=0.397 Sum_probs=70.4
Q ss_pred EEEeeCCeEEEEEEEEEe-CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCceec
Q 044767 538 VVLEKKRKIISAATVRVY-EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFSKM 616 (656)
Q Consensus 538 ~VLe~dg~iVg~a~lr~~-~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~~~ 616 (656)
+++..+|++||++.+... .+.++|..|+|+|+|||+|+|+.||..+++.+.+.|+..+.+.. .+..||+ ++||+.+
T Consensus 44 ~i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~--~~~~~Y~-k~GF~~~ 120 (152)
T PRK07757 44 YVAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALT--YQPEFFE-KLGFREV 120 (152)
T ss_pred EEEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEe--CcHHHHH-HCCCEEc
Confidence 456788999999999877 67889999999999999999999999999999999999987644 3578999 7999998
Q ss_pred ChHHH
Q 044767 617 TASER 621 (656)
Q Consensus 617 ~~~~~ 621 (656)
+....
T Consensus 121 ~~~~~ 125 (152)
T PRK07757 121 DKEAL 125 (152)
T ss_pred ccccC
Confidence 76443
No 23
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.92 E-value=5.1e-09 Score=101.80 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=69.7
Q ss_pred EEEEe-eCCeEEEEEEEEEe-CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCce
Q 044767 537 TVVLE-KKRKIISAATVRVY-EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFS 614 (656)
Q Consensus 537 ~~VLe-~dg~iVg~a~lr~~-~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~ 614 (656)
++|++ .++++||++.+... .+.++|..++|+|+|||+|+|+.||+++++.+++.|+.++.+... +..||+ ++||+
T Consensus 47 ~~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~-k~GF~ 123 (169)
T PRK07922 47 FWVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFA-RHGFV 123 (169)
T ss_pred EEEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHH-HCCCE
Confidence 34666 88999999988776 678999999999999999999999999999999999999987654 478999 79999
Q ss_pred ecCh
Q 044767 615 KMTA 618 (656)
Q Consensus 615 ~~~~ 618 (656)
.++.
T Consensus 124 ~~~~ 127 (169)
T PRK07922 124 EIDG 127 (169)
T ss_pred ECcc
Confidence 9864
No 24
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.90 E-value=1.1e-08 Score=113.61 Aligned_cols=80 Identities=23% Similarity=0.398 Sum_probs=71.1
Q ss_pred EEEeeCCeEEEEEEEEEe--CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCcee
Q 044767 538 VVLEKKRKIISAATVRVY--EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFSK 615 (656)
Q Consensus 538 ~VLe~dg~iVg~a~lr~~--~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~~ 615 (656)
+|++.++++||++.+..+ ...++|..++|+|+|||+|+|+.||+++++.++++|++.+++.+. .+..||+ ++||+.
T Consensus 325 ~V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~-~a~~fY~-k~GF~~ 402 (429)
T TIGR01890 325 SIIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTT-RTGHWFR-ERGFQT 402 (429)
T ss_pred EEEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeec-chHHHHH-HCCCEE
Confidence 567889999999999887 457999999999999999999999999999999999999887654 5679999 799999
Q ss_pred cChH
Q 044767 616 MTAS 619 (656)
Q Consensus 616 ~~~~ 619 (656)
++..
T Consensus 403 ~g~~ 406 (429)
T TIGR01890 403 ASVD 406 (429)
T ss_pred CChh
Confidence 9753
No 25
>PHA00673 acetyltransferase domain containing protein
Probab=98.85 E-value=2e-08 Score=96.96 Aligned_cols=85 Identities=12% Similarity=0.099 Sum_probs=74.1
Q ss_pred eEEEEEeeCCeEEEEEEEEEeC-------ceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCcc--chHH
Q 044767 535 FYTVVLEKKRKIISAATVRVYE-------KVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAP--SVLN 605 (656)
Q Consensus 535 ~y~~VLe~dg~iVg~a~lr~~~-------~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~--~a~~ 605 (656)
...+|++++|+|||++.+.+.. ..+.|..|.|++++||+|+|+.||+++++++++.|+..|+|+|.+ ..+.
T Consensus 55 ~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 55 AHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred cEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 4456788899999999988762 245799999999999999999999999999999999999999997 5789
Q ss_pred HhHhcCCceecChHH
Q 044767 606 AWTTKFGFSKMTASE 620 (656)
Q Consensus 606 fw~~kfGF~~~~~~~ 620 (656)
||. +.|++......
T Consensus 135 fy~-~~g~~~~~~~~ 148 (154)
T PHA00673 135 LLP-AAGYRETNRTF 148 (154)
T ss_pred HHH-hCCchhhchhh
Confidence 999 79999876543
No 26
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.82 E-value=1.9e-08 Score=96.67 Aligned_cols=81 Identities=17% Similarity=0.302 Sum_probs=67.7
Q ss_pred EEEEeeCCe-EEEEEEEEEe-Cc---eeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCcc---chHHHhH
Q 044767 537 TVVLEKKRK-IISAATVRVY-EK---VAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAP---SVLNAWT 608 (656)
Q Consensus 537 ~~VLe~dg~-iVg~a~lr~~-~~---~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~---~a~~fw~ 608 (656)
+++..+++. .||++..... .. -++|..+||+++|||||||+.|++.+++.+++.|+..++|++.. .|..+|+
T Consensus 58 ~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~ 137 (165)
T KOG3139|consen 58 CFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYE 137 (165)
T ss_pred EEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHH
Confidence 344333333 5888888776 33 48999999999999999999999999999999999999998875 7889999
Q ss_pred hcCCceecCh
Q 044767 609 TKFGFSKMTA 618 (656)
Q Consensus 609 ~kfGF~~~~~ 618 (656)
+|||+....
T Consensus 138 -sLGF~r~~r 146 (165)
T KOG3139|consen 138 -SLGFKRDKR 146 (165)
T ss_pred -hcCceEecc
Confidence 799998654
No 27
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.82 E-value=1.6e-08 Score=112.60 Aligned_cols=80 Identities=25% Similarity=0.404 Sum_probs=71.4
Q ss_pred EEEEeeCCeEEEEEEEEEe--CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCce
Q 044767 537 TVVLEKKRKIISAATVRVY--EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFS 614 (656)
Q Consensus 537 ~~VLe~dg~iVg~a~lr~~--~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~ 614 (656)
+++++.++++||++.+..+ ...++|..++|+|+|||+|+|+.||+++++++++.|+..+++.+ ..+..||+ ++||+
T Consensus 336 ~~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~-k~GF~ 413 (441)
T PRK05279 336 FTVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFL-ERGFV 413 (441)
T ss_pred EEEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHH-HCcCE
Confidence 3567889999999988766 35789999999999999999999999999999999999998776 46889999 79999
Q ss_pred ecCh
Q 044767 615 KMTA 618 (656)
Q Consensus 615 ~~~~ 618 (656)
.++.
T Consensus 414 ~~g~ 417 (441)
T PRK05279 414 PVDV 417 (441)
T ss_pred ECCh
Confidence 9885
No 28
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.81 E-value=1.8e-08 Score=116.57 Aligned_cols=81 Identities=20% Similarity=0.286 Sum_probs=72.3
Q ss_pred EEEEeeCCeEEEEEEEEEe-CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCcee
Q 044767 537 TVVLEKKRKIISAATVRVY-EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFSK 615 (656)
Q Consensus 537 ~~VLe~dg~iVg~a~lr~~-~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~~ 615 (656)
++|++.+|+|||++.+... .+.++|..++|+|+|||||+|+.||+.+++.+++.|++.|+|.+ .+..||+ ++||+.
T Consensus 505 ~~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~--~a~~FYe-k~GF~~ 581 (614)
T PRK12308 505 FAVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLT--RVPEFFM-KQGFSP 581 (614)
T ss_pred EEEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEee--CcHHHHH-HCCCEE
Confidence 4678889999999998877 56789999999999999999999999999999999999999875 3679999 799999
Q ss_pred cChHH
Q 044767 616 MTASE 620 (656)
Q Consensus 616 ~~~~~ 620 (656)
.+..+
T Consensus 582 ~~~~~ 586 (614)
T PRK12308 582 TSKSL 586 (614)
T ss_pred CCccc
Confidence 88554
No 29
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.80 E-value=1.9e-08 Score=108.29 Aligned_cols=82 Identities=22% Similarity=0.270 Sum_probs=73.5
Q ss_pred ceEEEEEeeCCeEEEEEEEEEeCceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCc
Q 044767 534 GFYTVVLEKKRKIISAATVRVYEKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGF 613 (656)
Q Consensus 534 g~y~~VLe~dg~iVg~a~lr~~~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF 613 (656)
-.++++++++|+|||+|++. .+ .|..|||+|+|||+|+|+.||.++++.+++.|+..++|.+.+....||+ ++||
T Consensus 30 ~d~~vv~~~~~~lVg~g~l~--g~--~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~-klGF 104 (332)
T TIGR00124 30 LEIFIAVYEDEEIIGCGGIA--GN--VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFE-YCGF 104 (332)
T ss_pred CCEEEEEEECCEEEEEEEEe--cC--EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHH-HcCC
Confidence 36788899999999999873 22 4889999999999999999999999999999999999999999999999 7999
Q ss_pred eecChHH
Q 044767 614 SKMTASE 620 (656)
Q Consensus 614 ~~~~~~~ 620 (656)
..+....
T Consensus 105 ~~i~~~~ 111 (332)
T TIGR00124 105 KTLAEAK 111 (332)
T ss_pred EEeeeec
Confidence 9987544
No 30
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=98.76 E-value=4e-09 Score=118.51 Aligned_cols=112 Identities=29% Similarity=0.738 Sum_probs=80.5
Q ss_pred cccccccC-----CceEeecC--CCCccCCCCcCCCCCCCCCCcCCCCC---------ccccCCCC-----CCCCcc---
Q 044767 338 MCVVCLDG-----GELICCDH--CPCMYHSSCLGLKDIPYGDWFCPLCC---------CAICGDGK-----FKQRTL--- 393 (656)
Q Consensus 338 ~C~vC~dg-----GeLl~Cd~--CprafH~~Cl~l~~~p~g~W~C~~C~---------C~iCg~~~-----~~~~~~--- 393 (656)
-|.||.|. .-|+.||+ |.-++|+.|+++..+|.|+|||..|. |.+|--.+ .|.+++
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHV 86 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHV 86 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEE
Confidence 49999974 24999996 99999999999999999999999996 77774321 111111
Q ss_pred ---------------------------------ccccCCC--------Ccccccc--ccccccccccccccccceee---
Q 044767 394 ---------------------------------HSVDDDD--------GLVRTCD--QCEHKFHTGCTRKSKRELKV--- 427 (656)
Q Consensus 394 ---------------------------------~~v~~~~--------~~ll~Cd--qC~r~yH~~Cl~~~~~~l~~--- 427 (656)
|++|.+. +..+.|+ .|.++||+.|.+-.+..-+|
T Consensus 87 VCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn 166 (900)
T KOG0956|consen 87 VCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGN 166 (900)
T ss_pred EEEeeccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceecccc
Confidence 2444333 2345565 47779999999876643332
Q ss_pred ccCCcccccchhhhhHHhhhhhc
Q 044767 428 KSQNKWFCSDRCEHVFSSLHELI 450 (656)
Q Consensus 428 ~p~g~WfC~~~C~~i~~~Lq~ll 450 (656)
+...--||+ .|+..|..|++--
T Consensus 167 ~~dNVKYCG-YCk~HfsKlkk~~ 188 (900)
T KOG0956|consen 167 ISDNVKYCG-YCKYHFSKLKKSP 188 (900)
T ss_pred ccccceech-hHHHHHHHhhcCC
Confidence 234567999 6999999998743
No 31
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.75 E-value=2.9e-09 Score=119.76 Aligned_cols=104 Identities=27% Similarity=0.718 Sum_probs=82.2
Q ss_pred ccccccccccccC-----CceEeecCCCCccCCCCcCC--C-CCCCCCCcCCCCC-ccccCCCCCCCCccccccCCCCcc
Q 044767 333 VETYDMCVVCLDG-----GELICCDHCPCMYHSSCLGL--K-DIPYGDWFCPLCC-CAICGDGKFKQRTLHSVDDDDGLV 403 (656)
Q Consensus 333 ~~ndd~C~vC~dg-----GeLl~Cd~CprafH~~Cl~l--~-~~p~g~W~C~~C~-C~iCg~~~~~~~~~~~v~~~~~~l 403 (656)
.....+|.+|+.. |.|+.|..|...||..|+.+ . .+-.+-|.|+.|+ |..|+... ++..+
T Consensus 15 ~~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~g-----------D~~kf 83 (694)
T KOG4443|consen 15 IIVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTG-----------DPKKF 83 (694)
T ss_pred hhhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccC-----------Ccccc
Confidence 3455679999854 45899999999999999983 2 2233449999998 99999654 77889
Q ss_pred ccccccccccccccccccccceeeccCCcccccchhhhhHHhhhhhcC
Q 044767 404 RTCDQCEHKFHTGCTRKSKRELKVKSQNKWFCSDRCEHVFSSLHELIG 451 (656)
Q Consensus 404 l~CdqC~r~yH~~Cl~~~~~~l~~~p~g~WfC~~~C~~i~~~Lq~llg 451 (656)
++|+.|+-+||.+|..| +++.++.++|+|+. |...+..=+.+.|
T Consensus 84 ~~Ck~cDvsyh~yc~~P---~~~~v~sg~~~ckk-~~~c~qc~~~lpg 127 (694)
T KOG4443|consen 84 LLCKRCDVSYHCYCQKP---PNDKVPSGPWLCKK-CTRCRQCDSTLPG 127 (694)
T ss_pred cccccccccccccccCC---ccccccCcccccHH-HHhhhhccccccc
Confidence 99999999999999999 78999999999997 6655443333333
No 32
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.73 E-value=7.1e-08 Score=103.04 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=85.9
Q ss_pred HhhHHHHHhhh--cCCCCCCCchhhhHHHHHhhhccccccccccceEEEEEee---CCeEEEEEEEEEeCceeeEeEEEe
Q 044767 492 LHGAVEVMHEC--FEPAKEPLTGRDLIEDVIFNRRSELKHLNYVGFYTVVLEK---KRKIISAATVRVYEKVAEIPFVAT 566 (656)
Q Consensus 492 l~~al~I~~e~--F~Pi~dp~s~~dl~~~~v~n~~s~~~r~~~~g~y~~VLe~---dg~iVg~a~lr~~~~~AEI~~VAv 566 (656)
+..++++.+.. |..-..+|+..++...+... ..+++.+.+ ++.+||++.++...+.++|..++|
T Consensus 197 l~ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~~-----------~~~~~~~~d~~gd~givG~~~~~~~~~~~~I~~l~v 265 (320)
T TIGR01686 197 VQRVEELLGRTNQFNATYTRLNQEDVAQHMQKE-----------EIVTVSMSDRFGDSGIIGIFVFEKKEGNLFIDDLCM 265 (320)
T ss_pred hHHHHHHHHhHHhhhccCccCCHHHHHHHhcCC-----------CEEEEEEEecCCCCceEEEEEEEecCCcEEEEEEEE
Confidence 34455555555 65545677877775554211 134444433 678999998876677889999999
Q ss_pred ccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCc-----cchHHHhHhcCCceec
Q 044767 567 MFKYRRNGMCRLLMAELEKQLIALGVERLVLPSA-----PSVLNAWTTKFGFSKM 616 (656)
Q Consensus 567 ~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~-----~~a~~fw~~kfGF~~~ 616 (656)
++.|||+|+|+.||.++++.+++.|++.|+|... ..|..||+ ++||...
T Consensus 266 s~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~-~~GF~~~ 319 (320)
T TIGR01686 266 SCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYE-QIGFEDE 319 (320)
T ss_pred cHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHH-HcCCccC
Confidence 9999999999999999999999999999999653 47899999 7999854
No 33
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.73 E-value=6.5e-08 Score=100.70 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=65.2
Q ss_pred eEEEEEeeCCeEEEEEEEEEe-CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCc-cchHHHhHhcCC
Q 044767 535 FYTVVLEKKRKIISAATVRVY-EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSA-PSVLNAWTTKFG 612 (656)
Q Consensus 535 ~y~~VLe~dg~iVg~a~lr~~-~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~-~~a~~fw~~kfG 612 (656)
..++|+..++++||++.+... ...++|..|+|+|+|||+|+|+.||+.+++.+. +.-.+.+... ..|..||+ ++|
T Consensus 46 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~-~~G 122 (292)
T TIGR03448 46 TRHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALAS-RLG 122 (292)
T ss_pred ceEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHH-HCC
Confidence 456777889999999998876 556789999999999999999999999999864 2234444433 57899999 799
Q ss_pred ceecCh
Q 044767 613 FSKMTA 618 (656)
Q Consensus 613 F~~~~~ 618 (656)
|+.+..
T Consensus 123 f~~~~~ 128 (292)
T TIGR03448 123 LVPTRE 128 (292)
T ss_pred CEEccE
Confidence 988764
No 34
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.70 E-value=1.4e-07 Score=88.46 Aligned_cols=84 Identities=19% Similarity=0.338 Sum_probs=68.1
Q ss_pred eEEEEEeeCCeEEEEEEEEEe-C----ceeeEeEEEeccCcccCChHHHHHHHHHHHHHH-cCCcEEEEcC---ccchHH
Q 044767 535 FYTVVLEKKRKIISAATVRVY-E----KVAEIPFVATMFKYRRNGMCRLLMAELEKQLIA-LGVERLVLPS---APSVLN 605 (656)
Q Consensus 535 ~y~~VLe~dg~iVg~a~lr~~-~----~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~-~gv~~l~L~A---~~~a~~ 605 (656)
.++++++.+|++||++.+... . ..+++. ++|.|+|||+|+|+.||+.+++++.+ .|.+.+.|.. -..+..
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 345677788999999998754 1 234554 89999999999999999999999998 6888877655 467889
Q ss_pred HhHhcCCceecChHH
Q 044767 606 AWTTKFGFSKMTASE 620 (656)
Q Consensus 606 fw~~kfGF~~~~~~~ 620 (656)
||+ ++||+..+...
T Consensus 130 ~y~-k~GF~~~g~~~ 143 (162)
T PRK10140 130 VYK-KYGFEIEGTGK 143 (162)
T ss_pred HHH-HCCCEEEeecc
Confidence 999 79999877543
No 35
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.69 E-value=1.3e-07 Score=90.59 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=66.6
Q ss_pred EEEEEe-eCCeEEEEEEEEEe---CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcC---ccchHHHhH
Q 044767 536 YTVVLE-KKRKIISAATVRVY---EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPS---APSVLNAWT 608 (656)
Q Consensus 536 y~~VLe-~dg~iVg~a~lr~~---~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A---~~~a~~fw~ 608 (656)
..+|++ .+|++||++.+... .+.+.|-.++|+|+|||+|+|+.||+.+++.++..++.+|.+.. -..|..||+
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 345666 57899999876544 34578999999999999999999999999999999999988754 457788999
Q ss_pred hcCCceecC
Q 044767 609 TKFGFSKMT 617 (656)
Q Consensus 609 ~kfGF~~~~ 617 (656)
++||+...
T Consensus 120 -k~G~~~~~ 127 (157)
T TIGR02406 120 -ALARRRGV 127 (157)
T ss_pred -HhCcccCC
Confidence 79997744
No 36
>PRK09831 putative acyltransferase; Provisional
Probab=98.69 E-value=6.2e-08 Score=91.14 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=62.9
Q ss_pred EEEEeeCCeEEEEEEEEEeCceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCceec
Q 044767 537 TVVLEKKRKIISAATVRVYEKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFSKM 616 (656)
Q Consensus 537 ~~VLe~dg~iVg~a~lr~~~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~~~ 616 (656)
++|+..+|++||++.+. ...+..++|+|+|||+|+|+.||+.+++.+.. +.+.+...|.+||+ ++||+.+
T Consensus 55 ~~v~~~~~~iiG~~~~~----~~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~-k~Gf~~~ 124 (147)
T PRK09831 55 VRVAVINAQPVGFITCI----EHYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFE-RYGFQTV 124 (147)
T ss_pred eEEEEECCEEEEEEEeh----hceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHH-HCCCEEe
Confidence 45678899999988763 24677899999999999999999999998875 56677788999999 7999998
Q ss_pred ChHH
Q 044767 617 TASE 620 (656)
Q Consensus 617 ~~~~ 620 (656)
+...
T Consensus 125 g~~~ 128 (147)
T PRK09831 125 KQQR 128 (147)
T ss_pred eccc
Confidence 8754
No 37
>PRK13688 hypothetical protein; Provisional
Probab=98.68 E-value=7.5e-08 Score=93.12 Aligned_cols=78 Identities=12% Similarity=0.175 Sum_probs=61.2
Q ss_pred EEEEEeeCCeEEEEEEEEEe-----------CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchH
Q 044767 536 YTVVLEKKRKIISAATVRVY-----------EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVL 604 (656)
Q Consensus 536 y~~VLe~dg~iVg~a~lr~~-----------~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~ 604 (656)
.++++..++++||++.+... .+.++|.+++|+|+|||||+|+.||+.+. +.++. +.+.++..|.
T Consensus 46 ~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~----~~~~~-~~~~~~~~a~ 120 (156)
T PRK13688 46 PFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAK----SFQLP-IKTIARNKSK 120 (156)
T ss_pred CEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHH----HhCCe-EEEEeccchH
Confidence 34567788999998877432 24579999999999999999999998544 44554 4556777899
Q ss_pred HHhHhcCCceecChH
Q 044767 605 NAWTTKFGFSKMTAS 619 (656)
Q Consensus 605 ~fw~~kfGF~~~~~~ 619 (656)
+||+ ++||+.++..
T Consensus 121 ~FY~-k~GF~~~~~~ 134 (156)
T PRK13688 121 DFWL-KLGFTPVEYK 134 (156)
T ss_pred HHHH-hCCCEEeEEe
Confidence 9999 7999988754
No 38
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.68 E-value=1.2e-07 Score=108.62 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=82.4
Q ss_pred HHhhHHHHHhhhcCCCCCCCchhhhHHHHHhhhccccccccccceEEEEEee--CCeEEEEEEEEEe-------CceeeE
Q 044767 491 KLHGAVEVMHECFEPAKEPLTGRDLIEDVIFNRRSELKHLNYVGFYTVVLEK--KRKIISAATVRVY-------EKVAEI 561 (656)
Q Consensus 491 kl~~al~I~~e~F~Pi~dp~s~~dl~~~~v~n~~s~~~r~~~~g~y~~VLe~--dg~iVg~a~lr~~-------~~~AEI 561 (656)
-+..+.+|..+++ ..||+...+...+ ...+..++|++. +|+|||++....+ ...++|
T Consensus 93 D~~~I~~L~~~~~---~~p~~~~~~~~~~-----------~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i 158 (547)
T TIGR03103 93 DVDAINRLYAARG---MVPVRVDFVLDHR-----------HSRAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSL 158 (547)
T ss_pred HHHHHHHHHHhcC---CCCCCHHHHHHHh-----------cCCCceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEE
Confidence 3556667777776 3455544443221 112345566664 6999999875322 124689
Q ss_pred eEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEc---CccchHHHhHhcCCceecC
Q 044767 562 PFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLP---SAPSVLNAWTTKFGFSKMT 617 (656)
Q Consensus 562 ~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~---A~~~a~~fw~~kfGF~~~~ 617 (656)
-.|+|+|+|||+|+|+.||+.+++.+++.|+..+.|. ....|..||+ ++||+.++
T Consensus 159 ~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~-klGf~~~~ 216 (547)
T TIGR03103 159 WCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYE-KLGFRRIP 216 (547)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHHH-HCCCEEee
Confidence 9999999999999999999999999999999998764 4467999999 79998865
No 39
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=98.67 E-value=2.3e-07 Score=91.08 Aligned_cols=116 Identities=16% Similarity=0.226 Sum_probs=90.7
Q ss_pred HHHhhHHHHHhhhcCCCCCCCchhhhHHHHHhhhccccccccccceEEEEEeeCCeEEEEEEEEEe--C----ceeeEeE
Q 044767 490 RKLHGAVEVMHECFEPAKEPLTGRDLIEDVIFNRRSELKHLNYVGFYTVVLEKKRKIISAATVRVY--E----KVAEIPF 563 (656)
Q Consensus 490 ~kl~~al~I~~e~F~Pi~dp~s~~dl~~~~v~n~~s~~~r~~~~g~y~~VLe~dg~iVg~a~lr~~--~----~~AEI~~ 563 (656)
.-...+-+|..+.|. ++.+..+++.+..... +++ ..-+|.+++|+|||.+.+.-+ . ..--+..
T Consensus 12 ~d~~~i~~~~~~aF~----~~~e~~~v~~lR~~~~-----~~~--~LslVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaP 80 (171)
T COG3153 12 ADIPAIEALTREAFG----PGREAKLVDKLREGGR-----PDL--TLSLVAEDDGEVVGHILFSPVTVGGEELGWLGLAP 80 (171)
T ss_pred hhHHHHHHHHHHHhh----cchHHHHHHHHHhcCC-----ccc--ceeEEEeeCCEEEEEEEEeEEEecCcccceEEEEe
Confidence 345556778889995 6677788888865442 111 345788899999999999887 3 2345788
Q ss_pred EEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCceecChHH
Q 044767 564 VATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFSKMTASE 620 (656)
Q Consensus 564 VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~~~~~~~ 620 (656)
+||+|+|||||||++||...++.|+..|...+++--. ..+|. +|||+......
T Consensus 81 LaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGd---p~YY~-rfGF~~~~~~~ 133 (171)
T COG3153 81 LAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGD---PTYYS-RFGFEPAAGAK 133 (171)
T ss_pred EEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecC---ccccc-ccCcEEccccc
Confidence 9999999999999999999999999999999998766 45776 89999976543
No 40
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.65 E-value=2.1e-07 Score=96.81 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=62.9
Q ss_pred CCeEEEEEEEEEeC---ceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCc---cchHHHhHhcCCceec
Q 044767 543 KRKIISAATVRVYE---KVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSA---PSVLNAWTTKFGFSKM 616 (656)
Q Consensus 543 dg~iVg~a~lr~~~---~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~---~~a~~fw~~kfGF~~~ 616 (656)
+|++||++.+.... +.++|..++|+|+|||+|+|+.||..+++.+++.|+..+.+... ..|..||+ ++||+..
T Consensus 208 ~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~-k~GF~~~ 286 (292)
T TIGR03448 208 PGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYE-KLGFTVA 286 (292)
T ss_pred CCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHH-HcCCEEc
Confidence 68999997666542 35778889999999999999999999999999999999887654 46899999 7999876
Q ss_pred C
Q 044767 617 T 617 (656)
Q Consensus 617 ~ 617 (656)
.
T Consensus 287 ~ 287 (292)
T TIGR03448 287 E 287 (292)
T ss_pred c
Confidence 5
No 41
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.60 E-value=1.7e-07 Score=87.90 Aligned_cols=81 Identities=27% Similarity=0.414 Sum_probs=71.2
Q ss_pred EE-EEEee--CCeEEEEEEEEEe----C---ceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHH
Q 044767 536 YT-VVLEK--KRKIISAATVRVY----E---KVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLN 605 (656)
Q Consensus 536 y~-~VLe~--dg~iVg~a~lr~~----~---~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~ 605 (656)
|+ +|+|+ .++|||+|++.+- . .-++|.-|+|+++||||++|+.|++.+..+++++|+-++.|.-.++.++
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~ 132 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVK 132 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhh
Confidence 44 45554 3799999999875 2 2368999999999999999999999999999999999999999999999
Q ss_pred HhHhcCCceecC
Q 044767 606 AWTTKFGFSKMT 617 (656)
Q Consensus 606 fw~~kfGF~~~~ 617 (656)
||+ +|||+..+
T Consensus 133 FYe-KcG~s~~~ 143 (150)
T KOG3396|consen 133 FYE-KCGYSNAG 143 (150)
T ss_pred HHH-HcCccccc
Confidence 999 89999866
No 42
>PRK01346 hypothetical protein; Provisional
Probab=98.58 E-value=4.8e-07 Score=99.33 Aligned_cols=80 Identities=20% Similarity=0.219 Sum_probs=68.1
Q ss_pred EEEEeeCCeEEEEEEEEEeC---------ceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHh
Q 044767 537 TVVLEKKRKIISAATVRVYE---------KVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAW 607 (656)
Q Consensus 537 ~~VLe~dg~iVg~a~lr~~~---------~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw 607 (656)
.++++++|++||++.+..+. ..+.|..|+|.|+|||+|+|+.||+++++.+++.|+..++|.+.. ..||
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y 126 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIY 126 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhH
Confidence 46778899999999876431 357899999999999999999999999999999999999998765 4789
Q ss_pred HhcCCceecChH
Q 044767 608 TTKFGFSKMTAS 619 (656)
Q Consensus 608 ~~kfGF~~~~~~ 619 (656)
. +|||......
T Consensus 127 ~-r~Gf~~~~~~ 137 (411)
T PRK01346 127 G-RFGYGPATYS 137 (411)
T ss_pred h-hCCCeeccce
Confidence 9 7999887653
No 43
>PHA01807 hypothetical protein
Probab=98.54 E-value=5.6e-07 Score=86.91 Aligned_cols=81 Identities=10% Similarity=0.115 Sum_probs=64.8
Q ss_pred eEEEEEeeCCeEEEEEEEEEeC-----ceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCcc---chHHH
Q 044767 535 FYTVVLEKKRKIISAATVRVYE-----KVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAP---SVLNA 606 (656)
Q Consensus 535 ~y~~VLe~dg~iVg~a~lr~~~-----~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~---~a~~f 606 (656)
.+.++++.+|++||++.+.... ...+|..|.|.|+|||+|+|+.||+++++.+++.|+..|.|.... .|+.|
T Consensus 53 ~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~ 132 (153)
T PHA01807 53 RTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIH 132 (153)
T ss_pred ceEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHH
Confidence 3446778899999999886552 233455689999999999999999999999999999999997765 67789
Q ss_pred hHhcCCceecCh
Q 044767 607 WTTKFGFSKMTA 618 (656)
Q Consensus 607 w~~kfGF~~~~~ 618 (656)
|+ .|++.+.
T Consensus 133 y~---~~~~~~~ 141 (153)
T PHA01807 133 YR---RVKPYGQ 141 (153)
T ss_pred HH---hcCccCC
Confidence 98 3555553
No 44
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.52 E-value=7.5e-07 Score=83.44 Aligned_cols=81 Identities=28% Similarity=0.427 Sum_probs=65.8
Q ss_pred EEEEeeCCeEEEEEEEEEe---CceeeEeEEEeccCcccCChHHHHHHHHHHHH-HHcCCcEEEEc---CccchHHHhHh
Q 044767 537 TVVLEKKRKIISAATVRVY---EKVAEIPFVATMFKYRRNGMCRLLMAELEKQL-IALGVERLVLP---SAPSVLNAWTT 609 (656)
Q Consensus 537 ~~VLe~dg~iVg~a~lr~~---~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l-~~~gv~~l~L~---A~~~a~~fw~~ 609 (656)
++|.+.+|++||++.++.. ...+++. +.|.++||++|+|+.|+..++++| .+.|+++|.+. ....++.||+
T Consensus 53 ~~v~~~~g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~- 130 (155)
T PF13420_consen 53 FLVAEEDGKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYK- 130 (155)
T ss_dssp EEEEECTTEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHH-
T ss_pred EEEEEcCCcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHH-
Confidence 3444459999999999976 3567777 666699999999999999999999 99999999863 4468899999
Q ss_pred cCCceecChH
Q 044767 610 KFGFSKMTAS 619 (656)
Q Consensus 610 kfGF~~~~~~ 619 (656)
++||+..+..
T Consensus 131 ~~GF~~~g~~ 140 (155)
T PF13420_consen 131 KLGFEEEGEL 140 (155)
T ss_dssp HTTEEEEEEE
T ss_pred hCCCEEEEEE
Confidence 7999987643
No 45
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=98.52 E-value=3.7e-07 Score=85.82 Aligned_cols=87 Identities=23% Similarity=0.276 Sum_probs=70.9
Q ss_pred cceEEEEEeeCCeEEEEEEEEE-------eCceeeEeEEEeccCcccCChHHHHHHHHHHHHHHc-CCcEEEEcCcc---
Q 044767 533 VGFYTVVLEKKRKIISAATVRV-------YEKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIAL-GVERLVLPSAP--- 601 (656)
Q Consensus 533 ~g~y~~VLe~dg~iVg~a~lr~-------~~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~-gv~~l~L~A~~--- 601 (656)
.+...+|++.+|++||++.+.. ......+..+++.++|||+|+|+.+|.++++.+.+. ++++|++....
T Consensus 46 ~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~ 125 (152)
T PF13523_consen 46 PGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNT 125 (152)
T ss_dssp TTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-H
T ss_pred CCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCH
Confidence 3567889999999999998864 234567889999999999999999999999999977 89999997654
Q ss_pred chHHHhHhcCCceecChHH
Q 044767 602 SVLNAWTTKFGFSKMTASE 620 (656)
Q Consensus 602 ~a~~fw~~kfGF~~~~~~~ 620 (656)
.+..+|+ ++||+.++..+
T Consensus 126 ~~~~~~~-k~GF~~~g~~~ 143 (152)
T PF13523_consen 126 RAIRLYE-KAGFRKVGEFE 143 (152)
T ss_dssp HHHHHHH-HTT-EEEEEEE
T ss_pred HHHHHHH-HcCCEEeeEEE
Confidence 7889999 79999987654
No 46
>PRK10514 putative acetyltransferase; Provisional
Probab=98.44 E-value=8.2e-07 Score=82.40 Aligned_cols=89 Identities=15% Similarity=0.127 Sum_probs=64.4
Q ss_pred EEEEeeCCeEEEEEEEEEeCceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCceec
Q 044767 537 TVVLEKKRKIISAATVRVYEKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFSKM 616 (656)
Q Consensus 537 ~~VLe~dg~iVg~a~lr~~~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~~~ 616 (656)
.++.+.++++||++.+. ..++..++|.|+|||+|+|+.||+.+++.+. .+...+...-..+..||+ |+||+..
T Consensus 52 ~~~~~~~~~~iG~~~~~----~~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~--~i~~~v~~~N~~a~~~ye-k~Gf~~~ 124 (145)
T PRK10514 52 WVAVDERDQPVGFMLLS----GGHMEALFVDPDVRGCGVGRMLVEHALSLHP--ELTTDVNEQNEQAVGFYK-KMGFKVT 124 (145)
T ss_pred EEEEecCCcEEEEEEEe----cCcEeEEEECHHhccCCHHHHHHHHHHHhcc--ccEEEeecCCHHHHHHHH-HCCCEEe
Confidence 34445689999988764 2456689999999999999999999998753 344444555578999999 7999998
Q ss_pred ChHHH-hccccceeEee
Q 044767 617 TASER-LNYLNYTFLDF 632 (656)
Q Consensus 617 ~~~~~-~~~~~~~~m~F 632 (656)
+.... .....+.++.|
T Consensus 125 ~~~~~~~~~~~~~~~~~ 141 (145)
T PRK10514 125 GRSEVDDQGRPYPLLHL 141 (145)
T ss_pred cccccCCCCCccceEEE
Confidence 75442 23334555444
No 47
>smart00258 SAND SAND domain.
Probab=98.38 E-value=1.9e-07 Score=79.17 Aligned_cols=65 Identities=26% Similarity=0.360 Sum_probs=52.3
Q ss_pred CCCeEEEeccCCCcccccceeeCCceeeCC--C-CceeeccccccccCCCCCCCCCceeecCCCchHHHHh
Q 044767 242 PGAKVCYGGKKGRVPLAKGSITNGGIKCNC--C-NEVFTLTGFEVHAGSKNHRPAANIFLEDGRSLVDCLR 309 (656)
Q Consensus 242 ~~~~V~y~~~kg~~~l~~G~i~~~GI~C~C--C-~~~~tpseFE~hAG~~~~rP~~nI~l~~G~SL~dc~~ 309 (656)
+.+||+|+..++. |+..++.. |+.+.| + ++||||+|||.+||....+.|...++++|.+|..++.
T Consensus 1 ~~lpV~CG~~~g~--L~~~kf~~-G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sIR~~g~~Lr~L~~ 68 (73)
T smart00258 1 SELPVTCGTVKGI--LYKKKFKC-GISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSIRCGGSSLRTLME 68 (73)
T ss_pred CccceeeCCeeee--eeHhhhhc-CcccCCccCCCEEEChHHHHhhcCCcccCCcchheeECCccHHHHHH
Confidence 4579999998875 76766644 665444 6 8999999999999988888898888999999986543
No 48
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=98.36 E-value=1e-06 Score=85.63 Aligned_cols=82 Identities=15% Similarity=0.205 Sum_probs=68.6
Q ss_pred eeCCeEEEEEEEEEe---CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCceecC
Q 044767 541 EKKRKIISAATVRVY---EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFSKMT 617 (656)
Q Consensus 541 e~dg~iVg~a~lr~~---~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~~~~ 617 (656)
|...+|||-+++-.+ ....=+..|.|++..||+|+|++||+.+|.+++..|+..++|.+..+ ..||+ ++||+..+
T Consensus 63 E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ-~~FYe-~lGYe~c~ 140 (225)
T KOG3397|consen 63 EENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ-CRFYE-SLGYEKCD 140 (225)
T ss_pred ccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc-hhhhh-hhcccccC
Confidence 455789998888766 23445788999999999999999999999999999999999988754 56999 69999988
Q ss_pred hHHHhcc
Q 044767 618 ASERLNY 624 (656)
Q Consensus 618 ~~~~~~~ 624 (656)
+....-.
T Consensus 141 Pi~~~~~ 147 (225)
T KOG3397|consen 141 PIVHSTT 147 (225)
T ss_pred ceecccc
Confidence 8765444
No 49
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.36 E-value=1.3e-07 Score=106.47 Aligned_cols=44 Identities=36% Similarity=0.926 Sum_probs=35.8
Q ss_pred cccccccccCCceEeecCCCCccCCCCcCCC---CCCCCCCcCCCCC
Q 044767 336 YDMCVVCLDGGELICCDHCPCMYHSSCLGLK---DIPYGDWFCPLCC 379 (656)
Q Consensus 336 dd~C~vC~dgGeLl~Cd~CprafH~~Cl~l~---~~p~g~W~C~~C~ 379 (656)
-+.|.+|..+|+++||+.|+.+||..|-... ..+.+.|.|..|.
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~ 93 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCP 93 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCC
Confidence 4679999999999999999999999998743 3444567777664
No 50
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.35 E-value=2.3e-06 Score=65.58 Aligned_cols=60 Identities=27% Similarity=0.332 Sum_probs=53.7
Q ss_pred EEEeeCCeEEEEEEEEEeC---ceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEE
Q 044767 538 VVLEKKRKIISAATVRVYE---KVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVL 597 (656)
Q Consensus 538 ~VLe~dg~iVg~a~lr~~~---~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L 597 (656)
++++.++++||++.+.... ..++|..++|+++|||+|+|+.||..+.+++.+.|++.+.|
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3566789999999887763 67999999999999999999999999999999999999886
No 51
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=98.34 E-value=2.2e-06 Score=83.40 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=67.3
Q ss_pred EEEEEeeCCeEEEEEEEEEe---CceeeEeEEEeccCcccCChHHHHHHHHHHHHH-HcCCcEEEEcC---ccchHHHhH
Q 044767 536 YTVVLEKKRKIISAATVRVY---EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLI-ALGVERLVLPS---APSVLNAWT 608 (656)
Q Consensus 536 y~~VLe~dg~iVg~a~lr~~---~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~-~~gv~~l~L~A---~~~a~~fw~ 608 (656)
+.++++.+|++||++.+... ...+++. ++|.|+|||+|+|+.++..+.+.+. .+|+++|++.. -..+..||+
T Consensus 58 ~~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~ye 136 (186)
T PRK15130 58 RRFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYR 136 (186)
T ss_pred cEEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHH
Confidence 35566789999999988765 2356774 8999999999999999999999987 47999998864 357899999
Q ss_pred hcCCceecCh
Q 044767 609 TKFGFSKMTA 618 (656)
Q Consensus 609 ~kfGF~~~~~ 618 (656)
++||+..+.
T Consensus 137 -k~GF~~~~~ 145 (186)
T PRK15130 137 -KLGFEVEGE 145 (186)
T ss_pred -HCCCEEEEE
Confidence 799998764
No 52
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.33 E-value=1.6e-07 Score=102.62 Aligned_cols=91 Identities=29% Similarity=0.714 Sum_probs=67.8
Q ss_pred CccccccccccccC-----CceEeecCCCCccCCCCcCCCCCCCCCCcCCCCC--------ccccCCCCC--CC---Ccc
Q 044767 332 QVETYDMCVVCLDG-----GELICCDHCPCMYHSSCLGLKDIPYGDWFCPLCC--------CAICGDGKF--KQ---RTL 393 (656)
Q Consensus 332 ~~~ndd~C~vC~dg-----GeLl~Cd~CprafH~~Cl~l~~~p~g~W~C~~C~--------C~iCg~~~~--~~---~~~ 393 (656)
+++-|+.|.+|... ..++.||+|.-++|..|.|+..+|+|.|+|..|. |.+|-..+. .. +.+
T Consensus 189 ~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW 268 (669)
T COG5141 189 SDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRW 268 (669)
T ss_pred chhhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCch
Confidence 34667889999853 4489999999999999999999999999999996 888855421 11 100
Q ss_pred -------------------------------------ccccC-CCCcccccc--ccccccccccccccc
Q 044767 394 -------------------------------------HSVDD-DDGLVRTCD--QCEHKFHTGCTRKSK 422 (656)
Q Consensus 394 -------------------------------------~~v~~-~~~~ll~Cd--qC~r~yH~~Cl~~~~ 422 (656)
|.+|+ ..|+.+.|. .|-++||++|.+..+
T Consensus 269 ~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCArrag 337 (669)
T COG5141 269 GHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEFGGTCIQCSYFNCTRAYHVTCARRAG 337 (669)
T ss_pred HhHhHHHhcchhccccccccchhhhhcccchhhHhheeeEEcccCcceeeecccchhhhhhhhhhhhcc
Confidence 12222 356677787 489999999998754
No 53
>PRK10562 putative acetyltransferase; Provisional
Probab=98.25 E-value=4.8e-06 Score=77.91 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=59.6
Q ss_pred EEEEEeeCCeEEEEEEEEEeCceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCcee
Q 044767 536 YTVVLEKKRKIISAATVRVYEKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFSK 615 (656)
Q Consensus 536 y~~VLe~dg~iVg~a~lr~~~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~~ 615 (656)
..+++..+|++||++.+.. ...|..++|+|+|||+|+|+.||+.+++.+.. +.-.+...-..+..||+ ++||+.
T Consensus 49 ~~~v~~~~~~~iG~~~~~~---~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~--~~~~v~~~N~~s~~~y~-k~Gf~~ 122 (145)
T PRK10562 49 QTWVWEEDGKLLGFVSVLE---GRFVGALFVAPKAVRRGIGKALMQHVQQRYPH--LSLEVYQKNQRAVNFYH-AQGFRI 122 (145)
T ss_pred cEEEEEECCEEEEEEEEee---ccEEEEEEECHHHcCCCHHHHHHHHHHhhCCe--EEEEEEcCChHHHHHHH-HCCCEE
Confidence 3456677899999988743 24678899999999999999999999886432 22233345568899999 799999
Q ss_pred cChH
Q 044767 616 MTAS 619 (656)
Q Consensus 616 ~~~~ 619 (656)
++..
T Consensus 123 ~~~~ 126 (145)
T PRK10562 123 VDSA 126 (145)
T ss_pred cccc
Confidence 8753
No 54
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=98.23 E-value=9.2e-06 Score=76.04 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=66.7
Q ss_pred EEEEeeCCeEEEEEEEEEeC---ceeeEeEEEeccCcccCChHHHHHHHHHHHHHH-cCCcEEEE---cCccchHHHhHh
Q 044767 537 TVVLEKKRKIISAATVRVYE---KVAEIPFVATMFKYRRNGMCRLLMAELEKQLIA-LGVERLVL---PSAPSVLNAWTT 609 (656)
Q Consensus 537 ~~VLe~dg~iVg~a~lr~~~---~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~-~gv~~l~L---~A~~~a~~fw~~ 609 (656)
+++++.+|++||++.+.... ..+++... +.|.+| +|+|+.+|.++++++.+ +|+.+|.+ +....+..||+
T Consensus 53 ~~~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~- 129 (156)
T TIGR03585 53 YWIVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYE- 129 (156)
T ss_pred EEEEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHH-
Confidence 45667899999999997652 45677655 899999 99999999999999985 69999987 45668899999
Q ss_pred cCCceecChHH
Q 044767 610 KFGFSKMTASE 620 (656)
Q Consensus 610 kfGF~~~~~~~ 620 (656)
++||+..+...
T Consensus 130 k~Gf~~~g~~~ 140 (156)
T TIGR03585 130 KFGFEREGVFR 140 (156)
T ss_pred HcCCeEeeeeh
Confidence 79999877443
No 55
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=98.22 E-value=7.4e-06 Score=71.43 Aligned_cols=73 Identities=21% Similarity=0.355 Sum_probs=54.0
Q ss_pred eEEEEEEEEEeCceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEE--cCccchHHHhHhcCCceecCh
Q 044767 545 KIISAATVRVYEKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVL--PSAPSVLNAWTTKFGFSKMTA 618 (656)
Q Consensus 545 ~iVg~a~lr~~~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L--~A~~~a~~fw~~kfGF~~~~~ 618 (656)
+.++.+...+..+.++|..|.|.|+|||+|+|+.|+.++.+.+.+.|..-+.. ..-..+..+|+ ++||+.+..
T Consensus 8 ~~~~l~~~~~~~~~g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~-klGf~~~~~ 82 (86)
T PF08445_consen 8 ELVALVAWIIRSDDGEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYE-KLGFREIEE 82 (86)
T ss_dssp CCEEEEEEEEESCTCCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHH-HCT-EEEEE
T ss_pred CccceeeEeeeCCCcEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHH-HcCCEEEEE
Confidence 34444443334556999999999999999999999999999999988775332 33457889999 799998743
No 56
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=98.17 E-value=1.3e-07 Score=82.30 Aligned_cols=71 Identities=27% Similarity=0.352 Sum_probs=53.0
Q ss_pred cCccCCCCeEEEeccCCCcccccceeeCCc--eeeCCC-CceeeccccccccCCCCCCCCCceeecCCCchHHHHh
Q 044767 237 NNVVFPGAKVCYGGKKGRVPLAKGSITNGG--IKCNCC-NEVFTLTGFEVHAGSKNHRPAANIFLEDGRSLVDCLR 309 (656)
Q Consensus 237 ~~~~~~~~~V~y~~~kg~~~l~~G~i~~~G--I~C~CC-~~~~tpseFE~hAG~~~~rP~~nI~l~~G~SL~dc~~ 309 (656)
.+|..+.+||+|+..+|. |+..++...| .+|+.+ ++||||++||.|+|....+.|...++++|.||..++.
T Consensus 4 ~~~~~~~lpVtCG~~~G~--L~~~k~~~~g~~~kCI~~~g~~~TP~eFE~~~G~~~sK~WK~SIr~~g~~L~~li~ 77 (82)
T PF01342_consen 4 VDFSDPELPVTCGDVKGT--LYKKKFVKQGICGKCIQCEGRWFTPSEFERHGGKGSSKDWKRSIRCGGEPLGKLIE 77 (82)
T ss_dssp GGGGCSEEEEEETTEEEE--EEHHHH-TTGTTSS-EEETTEEE-HHHHHHHHTTCTCS-HHHHSEETTEEHHHHHH
T ss_pred ccccCCeEeeEeCCeEEE--EEHHHhhcccccCceEeeCCcEECHHHHHhhcCcccCCCCCccEEECCEEHHHHHh
Confidence 355677899999988875 6666653444 456555 8999999999999998878788888889999987654
No 57
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=98.15 E-value=1.5e-05 Score=76.42 Aligned_cols=97 Identities=14% Similarity=0.181 Sum_probs=77.0
Q ss_pred cccceEEEEEee-CCeEEEEEEEEEe-C-----ceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcE---EEEcCc
Q 044767 531 NYVGFYTVVLEK-KRKIISAATVRVY-E-----KVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVER---LVLPSA 600 (656)
Q Consensus 531 ~~~g~y~~VLe~-dg~iVg~a~lr~~-~-----~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~---l~L~A~ 600 (656)
.|...+.+.++. ++.|||.+.+..+ . +.-.|.-+-|+|+|||+|+|+.|++.+-+.|..+|+.+ ++|+--
T Consensus 50 ~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN 129 (163)
T KOG3216|consen 50 PFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWN 129 (163)
T ss_pred CccEEEEEEEecCCCceeEEeeeecccccccccceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence 444444444554 7889999987765 2 34578899999999999999999999999999999887 567777
Q ss_pred cchHHHhHhcCCceecChHHHhccccceeEeeCCce
Q 044767 601 PSVLNAWTTKFGFSKMTASERLNYLNYTFLDFQGTI 636 (656)
Q Consensus 601 ~~a~~fw~~kfGF~~~~~~~~~~~~~~~~m~F~gt~ 636 (656)
..|+.||+ +.|++.... +.++.+.|-.
T Consensus 130 ~rAi~lY~-k~gaq~l~~--------W~l~r~~G~a 156 (163)
T KOG3216|consen 130 HRAILLYE-KVGAQDLKE--------WRLFRRTGEA 156 (163)
T ss_pred hhHHHHHH-HhCccccce--------eEEEEechHH
Confidence 89999999 799998665 6666666643
No 58
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.14 E-value=5.9e-06 Score=94.05 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=62.7
Q ss_pred CCeEEEEEEEEEe-Cc--------eeeEeEEE---e--------ccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccc
Q 044767 543 KRKIISAATVRVY-EK--------VAEIPFVA---T--------MFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPS 602 (656)
Q Consensus 543 dg~iVg~a~lr~~-~~--------~AEI~~VA---v--------~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~ 602 (656)
++.+||..+++.. .+ .|=|.-+. + .++|||+|+|+.||+++|++|++.|++.|.|.+...
T Consensus 422 ~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~~ 501 (522)
T TIGR01211 422 NDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGIG 501 (522)
T ss_pred CCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCch
Confidence 5789999988876 32 12233333 2 589999999999999999999999999999999999
Q ss_pred hHHHhHhcCCceecChH
Q 044767 603 VLNAWTTKFGFSKMTAS 619 (656)
Q Consensus 603 a~~fw~~kfGF~~~~~~ 619 (656)
|..||+ ++||...++-
T Consensus 502 A~~FY~-klGf~~~g~y 517 (522)
T TIGR01211 502 VREYYR-KLGYELDGPY 517 (522)
T ss_pred HHHHHH-HCCCEEEcce
Confidence 999999 7999987653
No 59
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=98.14 E-value=6.5e-06 Score=85.23 Aligned_cols=80 Identities=28% Similarity=0.353 Sum_probs=69.7
Q ss_pred EEEEeeCCeEEEEEEEEEe-CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEc--CccchHHHhHhcCCc
Q 044767 537 TVVLEKKRKIISAATVRVY-EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLP--SAPSVLNAWTTKFGF 613 (656)
Q Consensus 537 ~~VLe~dg~iVg~a~lr~~-~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~--A~~~a~~fw~~kfGF 613 (656)
.+.++.+|+||+.|..... ...++|.-|.|.|+|||+||+.+||.+|-+.+.+.|-..+..- .-+.|...|+ ++||
T Consensus 179 ~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~-riGF 257 (268)
T COG3393 179 TYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQ-RIGF 257 (268)
T ss_pred EEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHH-HhCC
Confidence 4456677799999999888 8899999999999999999999999999999888887765555 5578899999 7999
Q ss_pred eecC
Q 044767 614 SKMT 617 (656)
Q Consensus 614 ~~~~ 617 (656)
+..+
T Consensus 258 ~~~g 261 (268)
T COG3393 258 REIG 261 (268)
T ss_pred eecc
Confidence 9876
No 60
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=98.10 E-value=1.8e-05 Score=77.56 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=62.5
Q ss_pred eeCCeEEEEEEEEEe-C---ceeeEeEEEeccCcccCChHHHHHHHHHHHHHH-cCCcEEEEcCcc---chHHHhHhcCC
Q 044767 541 EKKRKIISAATVRVY-E---KVAEIPFVATMFKYRRNGMCRLLMAELEKQLIA-LGVERLVLPSAP---SVLNAWTTKFG 612 (656)
Q Consensus 541 e~dg~iVg~a~lr~~-~---~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~-~gv~~l~L~A~~---~a~~fw~~kfG 612 (656)
..++++||.+.+..+ . ..++|. +.+.|+|||+|+|+.++..+.+++.. +|+++|.+...+ .+..+|+ |+|
T Consensus 83 ~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~e-k~G 160 (194)
T PRK10809 83 PDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLA-RLG 160 (194)
T ss_pred CCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHH-HCC
Confidence 447899999999766 3 234555 57899999999999999999999987 699999987764 7889999 799
Q ss_pred ceecCh
Q 044767 613 FSKMTA 618 (656)
Q Consensus 613 F~~~~~ 618 (656)
|+..+.
T Consensus 161 f~~~g~ 166 (194)
T PRK10809 161 FEKEGY 166 (194)
T ss_pred CcEEee
Confidence 997553
No 61
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.10 E-value=1e-06 Score=100.29 Aligned_cols=118 Identities=25% Similarity=0.619 Sum_probs=80.4
Q ss_pred CCcccccccccccc-----CCceEeecCCCCccCCCCcCCCCCCCCCCcCCCCC------ccccCCCCCCC----Cc--c
Q 044767 331 HQVETYDMCVVCLD-----GGELICCDHCPCMYHSSCLGLKDIPYGDWFCPLCC------CAICGDGKFKQ----RT--L 393 (656)
Q Consensus 331 ~~~~ndd~C~vC~d-----gGeLl~Cd~CprafH~~Cl~l~~~p~g~W~C~~C~------C~iCg~~~~~~----~~--~ 393 (656)
-+.+++-.|-+|.. +.+|++||.|...+|..|+|+.++|+|.|.|..|. |.+|-+.+... .+ +
T Consensus 266 ie~dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~w 345 (893)
T KOG0954|consen 266 IEYDEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKW 345 (893)
T ss_pred eeccccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccCCCCee
Confidence 34567788999984 46799999999999999999999999999999997 77775542210 00 0
Q ss_pred -------------------------------------ccccC-CCCcccccc--ccccccccccccccccceeec-----
Q 044767 394 -------------------------------------HSVDD-DDGLVRTCD--QCEHKFHTGCTRKSKRELKVK----- 428 (656)
Q Consensus 394 -------------------------------------~~v~~-~~~~ll~Cd--qC~r~yH~~Cl~~~~~~l~~~----- 428 (656)
|.+|. .-|..+.|. .|..+||+.|....+..+...
T Consensus 346 AHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k~GACIqCs~k~C~t~fHv~CA~~aG~~~~~~~~~~D 425 (893)
T KOG0954|consen 346 AHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVKSGACIQCSNKTCRTAFHVTCAFEAGLEMKTILKEND 425 (893)
T ss_pred eEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhcccCcceEEecccchhhhccchhhhhcCCeeeeeeccCC
Confidence 11221 123344454 677899999999887654321
Q ss_pred -cCCcccccchhhhhHHhhhhhcC
Q 044767 429 -SQNKWFCSDRCEHVFSSLHELIG 451 (656)
Q Consensus 429 -p~g~WfC~~~C~~i~~~Lq~llg 451 (656)
-...-||+. |..+.+ .+.+|
T Consensus 426 ~v~~~s~c~k-hs~~~~--~~s~g 446 (893)
T KOG0954|consen 426 EVKFKSYCSK-HSDHRE--GKSLG 446 (893)
T ss_pred chhheeeccc-cccccc--ccccc
Confidence 123678886 666543 34444
No 62
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.08 E-value=1e-06 Score=99.50 Aligned_cols=46 Identities=46% Similarity=1.185 Sum_probs=41.5
Q ss_pred cccccccccCCce---EeecCCCCccCCCCcCC----CCCCCCCCcCCCCCcc
Q 044767 336 YDMCVVCLDGGEL---ICCDHCPCMYHSSCLGL----KDIPYGDWFCPLCCCA 381 (656)
Q Consensus 336 dd~C~vC~dgGeL---l~Cd~CprafH~~Cl~l----~~~p~g~W~C~~C~C~ 381 (656)
+++|..|+..|.. +|||+||++||+.|+.+ +.+|.|.|+|+.|.|.
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 6799999998877 99999999999999984 4899999999999853
No 63
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.04 E-value=2.3e-06 Score=102.70 Aligned_cols=54 Identities=37% Similarity=1.024 Sum_probs=46.9
Q ss_pred CccccccccccccC-----CceEeecCCCCccCCCCcCCCCCCCCCCcCCCCC--------ccccCC
Q 044767 332 QVETYDMCVVCLDG-----GELICCDHCPCMYHSSCLGLKDIPYGDWFCPLCC--------CAICGD 385 (656)
Q Consensus 332 ~~~ndd~C~vC~dg-----GeLl~Cd~CprafH~~Cl~l~~~p~g~W~C~~C~--------C~iCg~ 385 (656)
..+.|.+|.||.++ ..++.||.|..++|+.|++.+.+|+|.|.|..|. |..|-.
T Consensus 215 ~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~~cp~ 281 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCLLCPS 281 (1051)
T ss_pred ccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceEeccC
Confidence 35667789999975 4589999999999999999999999999999996 777744
No 64
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=98.02 E-value=3.6e-05 Score=74.43 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=66.2
Q ss_pred EEEEeeCCeEEEEEEEEEe---CceeeEeEEEeccCcccCChHHHHHHHHHHHHHH-cCCcEEEEcCc---cchHHHhHh
Q 044767 537 TVVLEKKRKIISAATVRVY---EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIA-LGVERLVLPSA---PSVLNAWTT 609 (656)
Q Consensus 537 ~~VLe~dg~iVg~a~lr~~---~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~-~gv~~l~L~A~---~~a~~fw~~ 609 (656)
.++++.+|++||.+.+... ...++|.. .+.|+|||+|+|..++.++.+++.. .|+++|.+... ..+..+|+
T Consensus 69 ~~~i~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~e- 146 (179)
T PRK10151 69 MFMIFKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVAL- 146 (179)
T ss_pred EEEEEECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHH-
Confidence 3555568999999998776 25688875 6899999999999999999999875 58999887644 45778998
Q ss_pred cCCceecChHH
Q 044767 610 KFGFSKMTASE 620 (656)
Q Consensus 610 kfGF~~~~~~~ 620 (656)
|+||+..+...
T Consensus 147 k~Gf~~~g~~~ 157 (179)
T PRK10151 147 RNGFTLEGCLK 157 (179)
T ss_pred HCCCEEEeEec
Confidence 79999876543
No 65
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.99 E-value=6.3e-05 Score=73.90 Aligned_cols=108 Identities=22% Similarity=0.251 Sum_probs=78.1
Q ss_pred ceEEEEEeeC-CeEEEEEEEEEe-Ccee----eEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEE--cCc-cchH
Q 044767 534 GFYTVVLEKK-RKIISAATVRVY-EKVA----EIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVL--PSA-PSVL 604 (656)
Q Consensus 534 g~y~~VLe~d-g~iVg~a~lr~~-~~~A----EI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L--~A~-~~a~ 604 (656)
|++.+|++.+ |+++|+|.+-.+ .-.+ ---.|-++|++||+|+|+.||+++...+..+|+..++- .+. ....
T Consensus 51 g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~aSi 130 (169)
T COG1247 51 GYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVELSIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLASI 130 (169)
T ss_pred CceEEEEEcCCCeEEEEEEeeeccCccccceEEEEEEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcHhH
Confidence 5778888766 999999999888 3221 22348999999999999999999999999999988763 222 2334
Q ss_pred HHhHhcCCceecChHHHhccccceeEeeCCceeeeecccCC
Q 044767 605 NAWTTKFGFSKMTASERLNYLNYTFLDFQGTIMCQKFLMKT 645 (656)
Q Consensus 605 ~fw~~kfGF~~~~~~~~~~~~~~~~m~F~gt~mlqK~l~~~ 645 (656)
.+-+ ++||+..+....-....-.+ =.+.++|+.|.+.
T Consensus 131 ~lh~-~~GF~~~G~~~~vg~k~g~w---ld~~~~~~~l~~~ 167 (169)
T COG1247 131 ALHE-KLGFEEVGTFPEVGDKFGRW---LDLVLMQLLLEEG 167 (169)
T ss_pred HHHH-HCCCEEeccccccccccceE---Eeeeeeehhhccc
Confidence 4454 89999988655543333333 3567788877653
No 66
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.90 E-value=4.6e-06 Score=96.74 Aligned_cols=83 Identities=30% Similarity=0.635 Sum_probs=62.6
Q ss_pred CCCCccCCCCcC--CCCCCCCCCcCCCCCcc----ccCCCC--CCCCccccccCCCCccccccccccccccccccccccc
Q 044767 353 HCPCMYHSSCLG--LKDIPYGDWFCPLCCCA----ICGDGK--FKQRTLHSVDDDDGLVRTCDQCEHKFHTGCTRKSKRE 424 (656)
Q Consensus 353 ~CprafH~~Cl~--l~~~p~g~W~C~~C~C~----iCg~~~--~~~~~~~~v~~~~~~ll~CdqC~r~yH~~Cl~~~~~~ 424 (656)
.|+|+||..|+. +...|+++|.|+.|.=. .+.... ......|++|.+.++++.|+.|+.+||..|+.+ +
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~---p 77 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKDDDWDDAEQEACRICADGGELLWCDTCPASFHASCLGP---P 77 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccccccccCCcchhhhhhhhhhcCCCcEEEeccccHHHHHHccCC---C
Confidence 499999999998 45666999999988611 111100 000112577888899999999999999999988 7
Q ss_pred eeeccCCcccccchh
Q 044767 425 LKVKSQNKWFCSDRC 439 (656)
Q Consensus 425 l~~~p~g~WfC~~~C 439 (656)
+...|.+.|.|++ |
T Consensus 78 l~~~p~~~~~c~R-c 91 (696)
T KOG0383|consen 78 LTPQPNGEFICPR-C 91 (696)
T ss_pred CCcCCccceeeee-e
Confidence 7888888899995 8
No 67
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.89 E-value=8.4e-05 Score=68.01 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=61.3
Q ss_pred eEEEEEee--CCeEEEEEEEEEe---CceeeEeEEEeccCcccCChHHHHHHHHHHHH-HHcCCcEEEEcCc---cchHH
Q 044767 535 FYTVVLEK--KRKIISAATVRVY---EKVAEIPFVATMFKYRRNGMCRLLMAELEKQL-IALGVERLVLPSA---PSVLN 605 (656)
Q Consensus 535 ~y~~VLe~--dg~iVg~a~lr~~---~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l-~~~gv~~l~L~A~---~~a~~ 605 (656)
.+++++.. ++++||.+.++.. .+.++|. +.+.++|||+|+|..++..+.+++ ..+|+.+|....- ..+..
T Consensus 56 ~~~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~ 134 (142)
T PF13302_consen 56 YYYFAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRR 134 (142)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHH
T ss_pred ceEEEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHH
Confidence 34444443 3579999999544 6889999 779999999999999999999999 6889999877554 46677
Q ss_pred HhHhcCCce
Q 044767 606 AWTTKFGFS 614 (656)
Q Consensus 606 fw~~kfGF~ 614 (656)
+++ |+||+
T Consensus 135 ~~~-k~GF~ 142 (142)
T PF13302_consen 135 LLE-KLGFE 142 (142)
T ss_dssp HHH-HTT-E
T ss_pred HHH-HcCCC
Confidence 888 79995
No 68
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.86 E-value=4.5e-06 Score=87.85 Aligned_cols=38 Identities=45% Similarity=1.168 Sum_probs=35.5
Q ss_pred cccCCceEeecC--CC-CccCCCCcCCCCCCCCCCcCCCCC
Q 044767 342 CLDGGELICCDH--CP-CMYHSSCLGLKDIPYGDWFCPLCC 379 (656)
Q Consensus 342 C~dgGeLl~Cd~--Cp-rafH~~Cl~l~~~p~g~W~C~~C~ 379 (656)
|...|+|+-||. || .+||..|+|+...|.|.|||+.|.
T Consensus 226 qvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~ 266 (274)
T KOG1973|consen 226 QVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCK 266 (274)
T ss_pred ccccccccccCCCCCCcceEEEeccccccCCCCcccchhhh
Confidence 567999999998 99 899999999999999999999886
No 69
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.85 E-value=4.7e-06 Score=95.37 Aligned_cols=39 Identities=26% Similarity=0.850 Sum_probs=34.9
Q ss_pred CCCccccccccccc-cccccccccccceeeccCCcccccchhhh
Q 044767 399 DDGLVRTCDQCEHK-FHTGCTRKSKRELKVKSQNKWFCSDRCEH 441 (656)
Q Consensus 399 ~~~~ll~CdqC~r~-yH~~Cl~~~~~~l~~~p~g~WfC~~~C~~ 441 (656)
.++.|+.||.|... ||++||+| +|.++|.+.|||.. |..
T Consensus 226 pEdVLLLCDsCN~~~YH~YCLDP---dl~eiP~~eWYC~N-C~d 265 (1134)
T KOG0825|consen 226 PEDVLLLCDSCNKVYYHVYCLDP---DLSESPVNEWYCTN-CSL 265 (1134)
T ss_pred hHHhheeecccccceeeccccCc---ccccccccceecCc-chh
Confidence 45679999999998 99999998 78899999999996 984
No 70
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.84 E-value=5.4e-06 Score=64.95 Aligned_cols=42 Identities=48% Similarity=1.250 Sum_probs=35.1
Q ss_pred ccccccc---CCceEeecCCCCccCCCCcCCC----CCCCCCCcCCCCC
Q 044767 338 MCVVCLD---GGELICCDHCPCMYHSSCLGLK----DIPYGDWFCPLCC 379 (656)
Q Consensus 338 ~C~vC~d---gGeLl~Cd~CprafH~~Cl~l~----~~p~g~W~C~~C~ 379 (656)
+|.+|+. .++++.||.|.+.||..|+++. ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4788886 6789999999999999999964 4455699999885
No 71
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.81 E-value=8.2e-06 Score=63.92 Aligned_cols=49 Identities=29% Similarity=0.939 Sum_probs=36.8
Q ss_pred ccccCCCCCCCCccccccCCCCccccccccccccccccccccccceeeccCCcccccchhhh
Q 044767 380 CAICGDGKFKQRTLHSVDDDDGLVRTCDQCEHKFHTGCTRKSKRELKVKSQNKWFCSDRCEH 441 (656)
Q Consensus 380 C~iCg~~~~~~~~~~~v~~~~~~ll~CdqC~r~yH~~Cl~~~~~~l~~~p~g~WfC~~~C~~ 441 (656)
|.+|+... +++.++.|+.|++.||..|+.+... ....+.+.|+|+. |.+
T Consensus 2 C~vC~~~~-----------~~~~~i~C~~C~~~~H~~C~~~~~~-~~~~~~~~w~C~~-C~~ 50 (51)
T PF00628_consen 2 CPVCGQSD-----------DDGDMIQCDSCNRWYHQECVGPPEK-AEEIPSGDWYCPN-CRP 50 (51)
T ss_dssp BTTTTSSC-----------TTSSEEEBSTTSCEEETTTSTSSHS-HHSHHSSSBSSHH-HHH
T ss_pred CcCCCCcC-----------CCCCeEEcCCCChhhCcccCCCChh-hccCCCCcEECcC-CcC
Confidence 66777732 5677999999999999999998432 2244455999996 864
No 73
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.81 E-value=1.1e-05 Score=89.41 Aligned_cols=107 Identities=21% Similarity=0.403 Sum_probs=76.8
Q ss_pred cccccccc-----CCceEeecCCCCccCCCCcCCCCCCCCCCcCCCCC--------------------------------
Q 044767 337 DMCVVCLD-----GGELICCDHCPCMYHSSCLGLKDIPYGDWFCPLCC-------------------------------- 379 (656)
Q Consensus 337 d~C~vC~d-----gGeLl~Cd~CprafH~~Cl~l~~~p~g~W~C~~C~-------------------------------- 379 (656)
-.|.+|.. +.++..|+.|.++||..|........+.|.+..|.
T Consensus 84 ~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~wD~ 163 (464)
T KOG4323|consen 84 LNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASLDWDS 163 (464)
T ss_pred cCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccccccccccccccccCcccccccCc
Confidence 34667763 45688999999999999998766666778887765
Q ss_pred -------ccccCCCCCCCCccccccCCCCccccccccccccccccccccccc-eeeccCCcccccchhhhhHHhhhhhcC
Q 044767 380 -------CAICGDGKFKQRTLHSVDDDDGLVRTCDQCEHKFHTGCTRKSKRE-LKVKSQNKWFCSDRCEHVFSSLHELIG 451 (656)
Q Consensus 380 -------C~iCg~~~~~~~~~~~v~~~~~~ll~CdqC~r~yH~~Cl~~~~~~-l~~~p~g~WfC~~~C~~i~~~Lq~llg 451 (656)
|.+|.... ....+.|+.|+.|..+||..|+.+...+ +-..+...|||.. |.+--+.+..+.+
T Consensus 164 ~~~~n~qc~vC~~g~---------~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~-C~~~~~~~~r~t~ 233 (464)
T KOG4323|consen 164 GHKVNLQCSVCYCGG---------PGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDV-CNRGPKKVPRLTL 233 (464)
T ss_pred cccccceeeeeecCC---------cCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehh-hccchhhcccccc
Confidence 33332221 1244589999999999999999986543 4566889999996 8875555555555
Q ss_pred CC
Q 044767 452 KP 453 (656)
Q Consensus 452 ~~ 453 (656)
..
T Consensus 234 ~~ 235 (464)
T KOG4323|consen 234 RW 235 (464)
T ss_pred cc
Confidence 43
No 74
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.80 E-value=5.4e-06 Score=98.00 Aligned_cols=113 Identities=21% Similarity=0.430 Sum_probs=80.4
Q ss_pred CccccccccccccCCceEeecCCCCccCCCCcC--CCCCCCCCCcCCCCC-ccc-----cCCCCC-------------CC
Q 044767 332 QVETYDMCVVCLDGGELICCDHCPCMYHSSCLG--LKDIPYGDWFCPLCC-CAI-----CGDGKF-------------KQ 390 (656)
Q Consensus 332 ~~~ndd~C~vC~dgGeLl~Cd~CprafH~~Cl~--l~~~p~g~W~C~~C~-C~i-----Cg~~~~-------------~~ 390 (656)
...-+|.|.+|++.|+++||..||+.||..|+. +-.+|...|.|.-|. |.+ |-.+.. +.
T Consensus 340 ~~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~~iG~dr 419 (1414)
T KOG1473|consen 340 EIEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSIRHTPIGRDR 419 (1414)
T ss_pred ceeecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccceeccCCCcCc
Confidence 345568899999999999999999999999987 457889999998886 111 111100 00
Q ss_pred Cc--------cccccCCCCccccccc-ccccccc-ccccccccceeeccCCcccccchhhhhHHhh
Q 044767 391 RT--------LHSVDDDDGLVRTCDQ-CEHKFHT-GCTRKSKRELKVKSQNKWFCSDRCEHVFSSL 446 (656)
Q Consensus 391 ~~--------~~~v~~~~~~ll~Cdq-C~r~yH~-~Cl~~~~~~l~~~p~g~WfC~~~C~~i~~~L 446 (656)
.+ .+.++..+++++.|+. |+..||. .|++... .-..++.+.|+|+. |-.-..+|
T Consensus 420 ~gr~ywfi~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~-~e~~L~d~i~~~~e-e~~rqM~l 483 (1414)
T KOG1473|consen 420 YGRKYWFISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTY-VEMYLCDGIWERRE-EIIRQMGL 483 (1414)
T ss_pred cccchhceeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHH-HHHhhccchhhhHH-HHHHhccc
Confidence 00 1245667888999987 9999998 9998522 23467889999996 65433333
No 75
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=97.78 E-value=2.9e-05 Score=77.36 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=77.2
Q ss_pred hHHHHHhhhcCCCCCCCchhhhHHHHHhhhccccccccccceEEEEEeeCCeEEEEEEEEEe--Cc---------eeeEe
Q 044767 494 GAVEVMHECFEPAKEPLTGRDLIEDVIFNRRSELKHLNYVGFYTVVLEKKRKIISAATVRVY--EK---------VAEIP 562 (656)
Q Consensus 494 ~al~I~~e~F~Pi~dp~s~~dl~~~~v~n~~s~~~r~~~~g~y~~VLe~dg~iVg~a~lr~~--~~---------~AEI~ 562 (656)
..-.|...+| |+.-+.+ |-++++++. +|.. ++..++..||..+.+.. .. +..|.
T Consensus 29 ~~~~l~~~~f-P~~y~~k---fy~~~~~~~-------~~~~----~A~~~~~~v~a~~~k~~~~~~~~~r~~~~~~~yi~ 93 (187)
T KOG3138|consen 29 QLKQLNEDIF-PISYVDK---FYPDVLSNG-------DLTQ----LAYYNEIAVGAVACKLIKFVQNAKRLFGNRVIYIL 93 (187)
T ss_pred HHHHHhcccc-CcchHHH---HHHHHHhcC-------CHHH----hhhhccccccceeeeehhhhhhhhhhhccceeEEE
Confidence 3334556677 5544322 667776654 2222 23344555555555554 11 26799
Q ss_pred EEEeccCcccCChHHHHHHHHHHHHHHcC-CcEEEEcCc---cchHHHhHhcCCceecCh
Q 044767 563 FVATMFKYRRNGMCRLLMAELEKQLIALG-VERLVLPSA---PSVLNAWTTKFGFSKMTA 618 (656)
Q Consensus 563 ~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~g-v~~l~L~A~---~~a~~fw~~kfGF~~~~~ 618 (656)
.++|.+.||.+|||..||+.+.+.+...+ ++.++|+.+ ..|..||+ ++||+.+..
T Consensus 94 ~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~-~~gF~~~~~ 152 (187)
T KOG3138|consen 94 SLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYE-KRGFEIVER 152 (187)
T ss_pred eecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHH-hcCceEeec
Confidence 99999999999999999999999999988 888988877 58999999 799999763
No 76
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.71 E-value=1.6e-05 Score=81.37 Aligned_cols=42 Identities=40% Similarity=1.168 Sum_probs=36.9
Q ss_pred cccccccc--CCceEeecC--CCC-ccCCCCcCCCCCCCCCCcCCCCC
Q 044767 337 DMCVVCLD--GGELICCDH--CPC-MYHSSCLGLKDIPYGDWFCPLCC 379 (656)
Q Consensus 337 d~C~vC~d--gGeLl~Cd~--Cpr-afH~~Cl~l~~~p~g~W~C~~C~ 379 (656)
-+|+ |.. .|+|+-||+ |.+ +||..|+|+...|.|.|||+.|+
T Consensus 222 lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk 268 (271)
T COG5034 222 LYCF-CQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECK 268 (271)
T ss_pred eEEE-ecccccccceecCCCCCchhheeccccccCCCCCCcEeCHHhH
Confidence 3454 664 699999996 999 99999999999999999999996
No 77
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=97.61 E-value=0.00045 Score=68.59 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=71.5
Q ss_pred CchhhhHHHHHhhhccccccccccceEEEEEeeC-CeEEEEEEEEEe--Cc--eeeEeEEEeccCcccCChHHHHHHHHH
Q 044767 510 LTGRDLIEDVIFNRRSELKHLNYVGFYTVVLEKK-RKIISAATVRVY--EK--VAEIPFVATMFKYRRNGMCRLLMAELE 584 (656)
Q Consensus 510 ~s~~dl~~~~v~n~~s~~~r~~~~g~y~~VLe~d-g~iVg~a~lr~~--~~--~AEI~~VAv~~~yRgqG~Gr~Lm~~lE 584 (656)
|-...-..+|..+. .-++++-.+ +++||+..+|.. .+ +.-+--|=+.+.|||+|||+.||+.++
T Consensus 78 w~~~~K~~El~~~~-----------~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~ 146 (202)
T KOG2488|consen 78 WDDNSKAKELRNRK-----------LRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLE 146 (202)
T ss_pred cCchhHHHHHhhcc-----------ceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHH
Confidence 44444456665443 344555444 499999999987 23 455566788999999999999999999
Q ss_pred HHHHHcCCcEEEE---cCccchHHHhHhcCCceecC
Q 044767 585 KQLIALGVERLVL---PSAPSVLNAWTTKFGFSKMT 617 (656)
Q Consensus 585 ~~l~~~gv~~l~L---~A~~~a~~fw~~kfGF~~~~ 617 (656)
..+.....+.|+| ..-..|.+||. ++||-...
T Consensus 147 ~~a~~~~~~kVmLTVf~~N~~al~Fy~-~~gf~~~~ 181 (202)
T KOG2488|consen 147 KLADSRHMRKVMLTVFSENIRALGFYH-RLGFVVDE 181 (202)
T ss_pred HHHHHHHhhhheeeeecccchhHHHHH-HcCcccCC
Confidence 9998877665544 66778999999 69997754
No 78
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.55 E-value=3.2e-05 Score=80.18 Aligned_cols=44 Identities=36% Similarity=1.013 Sum_probs=38.6
Q ss_pred cccccccccccc---CCceEeecCCCCccCCCCcCCCCCCCCCCcCC
Q 044767 333 VETYDMCVVCLD---GGELICCDHCPCMYHSSCLGLKDIPYGDWFCP 376 (656)
Q Consensus 333 ~~ndd~C~vC~d---gGeLl~Cd~CprafH~~Cl~l~~~p~g~W~C~ 376 (656)
-.....|.+|+. ..++++||.|++.||..|+|+..+|.|.|.|-
T Consensus 311 C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD 357 (381)
T KOG1512|consen 311 CSSCELCRICLGPVIESEHLFCDVCDRGPHTLCVGLQDLPRGEWICD 357 (381)
T ss_pred hcccHhhhccCCcccchheeccccccCCCCccccccccccCccchhh
Confidence 344567999986 46899999999999999999999999999985
No 80
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.54 E-value=0.00012 Score=73.45 Aligned_cols=58 Identities=29% Similarity=0.388 Sum_probs=41.6
Q ss_pred eeEeEEEeccCcccCChHHHHHHHHHHHH-------------------------HHcCCcEEEE--cCccchHHHhHhcC
Q 044767 559 AEIPFVATMFKYRRNGMCRLLMAELEKQL-------------------------IALGVERLVL--PSAPSVLNAWTTKF 611 (656)
Q Consensus 559 AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l-------------------------~~~gv~~l~L--~A~~~a~~fw~~kf 611 (656)
+.|-||||.|++|++|||++|++.+++++ +..++..|-. -+.++...||. +.
T Consensus 91 ~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~-k~ 169 (196)
T PF13718_consen 91 ARIVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQ-KN 169 (196)
T ss_dssp EEEEEEEE-CCC-SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHH-CT
T ss_pred eeEEEEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHH-HC
Confidence 45789999999999999999999999999 4567776543 46689999999 79
Q ss_pred CceecC
Q 044767 612 GFSKMT 617 (656)
Q Consensus 612 GF~~~~ 617 (656)
||.++-
T Consensus 170 gf~pv~ 175 (196)
T PF13718_consen 170 GFVPVY 175 (196)
T ss_dssp T-EEEE
T ss_pred CcEEEE
Confidence 999865
No 81
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.51 E-value=3.3e-05 Score=79.69 Aligned_cols=49 Identities=35% Similarity=0.847 Sum_probs=40.6
Q ss_pred CCcccccccccccc---CCceEeecCCCCccCCCCcC--CCCCCCCCCcCCCCC
Q 044767 331 HQVETYDMCVVCLD---GGELICCDHCPCMYHSSCLG--LKDIPYGDWFCPLCC 379 (656)
Q Consensus 331 ~~~~ndd~C~vC~d---gGeLl~Cd~CprafH~~Cl~--l~~~p~g~W~C~~C~ 379 (656)
++-.....|.+|+. ..+|++||.|.+.||++||. +.+.|+|.|.|..|.
T Consensus 276 wqcieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG 329 (336)
T KOG1244|consen 276 WQCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCL 329 (336)
T ss_pred eeeeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence 45566677999984 46699999999999999998 568899999997764
No 82
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=97.50 E-value=6.2e-05 Score=73.13 Aligned_cols=85 Identities=25% Similarity=0.610 Sum_probs=59.8
Q ss_pred ccccccc------CCceEeecCCCCccCCCCcCCC--------CCCCCCC--cCCCCC---------------ccccCCC
Q 044767 338 MCVVCLD------GGELICCDHCPCMYHSSCLGLK--------DIPYGDW--FCPLCC---------------CAICGDG 386 (656)
Q Consensus 338 ~C~vC~d------gGeLl~Cd~CprafH~~Cl~l~--------~~p~g~W--~C~~C~---------------C~iCg~~ 386 (656)
.|.+|+. -|.|+.|-+|..+||..||+.. .+-++.+ .|.+|. |..|...
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~ 80 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKP 80 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCC
Confidence 3777852 3679999999999999999942 3444544 688886 8888765
Q ss_pred CCCC-------------------Cccc--------cccCCCCccccccccccccccccccccc
Q 044767 387 KFKQ-------------------RTLH--------SVDDDDGLVRTCDQCEHKFHTGCTRKSK 422 (656)
Q Consensus 387 ~~~~-------------------~~~~--------~v~~~~~~ll~CdqC~r~yH~~Cl~~~~ 422 (656)
+..- ++.. .+...++.|+.|..|.|+||..-|++.+
T Consensus 81 G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 81 GPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred CCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence 4321 1110 1233456689999999999999998853
No 83
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=97.48 E-value=0.00053 Score=59.00 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=53.1
Q ss_pred EEEeeCCeEEEEEEEEEeCceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHh
Q 044767 538 VVLEKKRKIISAATVRVYEKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAW 607 (656)
Q Consensus 538 ~VLe~dg~iVg~a~lr~~~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw 607 (656)
|.+..||+.+|...++...+...|...-|.|++||||+|+.||+++.+.+++.|.+-+ |.=+.+..+.
T Consensus 2 F~~~~~g~~~a~l~Y~~~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~--p~C~y~~~~~ 69 (78)
T PF14542_consen 2 FELKDDGEEIAELTYREDGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVV--PTCSYVAKYF 69 (78)
T ss_dssp EEEESSTTEEEEEEEEESSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEE--ETSHHHHHHH
T ss_pred EEEEECCEEEEEEEEEeCCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEE--EECHHHHHHH
Confidence 3456778898998886668899999999999999999999999999999999887643 4444444333
No 84
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=97.46 E-value=0.00029 Score=68.09 Aligned_cols=80 Identities=21% Similarity=0.343 Sum_probs=65.6
Q ss_pred EEEe-eCCeEEEEEEEEEeC----c--eeeEeEEEeccCcccCChHHHHHHHHHHHHHH-cCCcEEEEcCcc---chHHH
Q 044767 538 VVLE-KKRKIISAATVRVYE----K--VAEIPFVATMFKYRRNGMCRLLMAELEKQLIA-LGVERLVLPSAP---SVLNA 606 (656)
Q Consensus 538 ~VLe-~dg~iVg~a~lr~~~----~--~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~-~gv~~l~L~A~~---~a~~f 606 (656)
+|++ .+|+|||+.-..+.+ + -++|..+||...||+.|+++.||........+ .+++.+-|+... .|+.+
T Consensus 44 yVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~L 123 (193)
T KOG3235|consen 44 YVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHL 123 (193)
T ss_pred EEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHh
Confidence 4565 679999998887763 1 36899999999999999999999876655444 488889998764 78899
Q ss_pred hHhcCCceecC
Q 044767 607 WTTKFGFSKMT 617 (656)
Q Consensus 607 w~~kfGF~~~~ 617 (656)
|+..+||++.+
T Consensus 124 Y~~tl~F~v~e 134 (193)
T KOG3235|consen 124 YKNTLGFVVCE 134 (193)
T ss_pred hhhccceEEee
Confidence 99899999876
No 85
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.40 E-value=4.7e-05 Score=88.55 Aligned_cols=51 Identities=45% Similarity=1.170 Sum_probs=44.0
Q ss_pred CCccccccccccccCCceEeecCCCCccCCCCcC--CCCCCCCCCcCCCCCcc
Q 044767 331 HQVETYDMCVVCLDGGELICCDHCPCMYHSSCLG--LKDIPYGDWFCPLCCCA 381 (656)
Q Consensus 331 ~~~~ndd~C~vC~dgGeLl~Cd~CprafH~~Cl~--l~~~p~g~W~C~~C~C~ 381 (656)
.++.+...|.+|.++|++++||.||.+||..|++ +...|.+.|.|+.|.|.
T Consensus 42 ~~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 42 WDDAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred cchhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence 4456667899999999999999999999999998 45778888999988654
No 86
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.20 E-value=0.0001 Score=83.95 Aligned_cols=115 Identities=23% Similarity=0.583 Sum_probs=76.1
Q ss_pred ccccccccccc---CCceEeecCCCCccCCCCcC--CCCCCCCCCcCCCCC-ccccCCCCCC------C-Cccc------
Q 044767 334 ETYDMCVVCLD---GGELICCDHCPCMYHSSCLG--LKDIPYGDWFCPLCC-CAICGDGKFK------Q-RTLH------ 394 (656)
Q Consensus 334 ~ndd~C~vC~d---gGeLl~Cd~CprafH~~Cl~--l~~~p~g~W~C~~C~-C~iCg~~~~~------~-~~~~------ 394 (656)
...-.|..|+. .+.++.|+.|.-+||.+|.. ...++.|.|+|+.|. |..|...... . ...+
T Consensus 66 ~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s~~~~~~~~~~~~c~s~ 145 (694)
T KOG4443|consen 66 PSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLSLDLQEGYLQCAPCASL 145 (694)
T ss_pred CCceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccchhhhccCccccccccc
Confidence 44456888874 45589999999999999987 468999999999996 7777653211 0 1111
Q ss_pred ---cc------cCCCCcccccccccccccccccccccccee-eccCCcccccchhh-------hhHHhhhhh
Q 044767 395 ---SV------DDDDGLVRTCDQCEHKFHTGCTRKSKRELK-VKSQNKWFCSDRCE-------HVFSSLHEL 449 (656)
Q Consensus 395 ---~v------~~~~~~ll~CdqC~r~yH~~Cl~~~~~~l~-~~p~g~WfC~~~C~-------~i~~~Lq~l 449 (656)
-+ ..+.-.++.|++|.++-|..|-........ ..-.-.+-|+- |. .|.+.|+++
T Consensus 146 ~~cPvc~~~Y~~~e~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~vD~~~~CS~-CR~es~qvKdi~~~vqe~ 216 (694)
T KOG4443|consen 146 SYCPVCLIVYQDSESLPMVCCSICQRWSHGGCDGISDDKYMQAQVDLQYKCST-CRGESYQVKDISDALQET 216 (694)
T ss_pred ccCchHHHhhhhccchhhHHHHHhcccccCCCCccchHHHHHHhhhhhcccce-eehhhhhhhhHHHHHHhh
Confidence 11 112233589999999999999876553311 11124677885 76 355566654
No 87
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=97.19 E-value=0.00073 Score=59.73 Aligned_cols=73 Identities=21% Similarity=0.233 Sum_probs=58.9
Q ss_pred EEeeCCeEEEEEEEEEe-CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCcc---chHHHhHhcCCce
Q 044767 539 VLEKKRKIISAATVRVY-EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAP---SVLNAWTTKFGFS 614 (656)
Q Consensus 539 VLe~dg~iVg~a~lr~~-~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~---~a~~fw~~kfGF~ 614 (656)
||..+|.+|+ |+. +..+||+--+|.|+|||||+.+.++..+.+.+.++|+.- +++... ....+-. ++||.
T Consensus 3 llgpeG~PVS----W~lmdqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~-Y~hv~~~N~~~~r~~~-~lg~~ 76 (89)
T PF08444_consen 3 LLGPEGNPVS----WSLMDQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPF-YGHVDEDNEASQRLSK-SLGFI 76 (89)
T ss_pred ccCCCCCEeE----EEEecccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCe-EeehHhccHHHHHHHH-HCCCe
Confidence 5667899977 556 889999999999999999999999999999999999874 444443 3444444 69998
Q ss_pred ecC
Q 044767 615 KMT 617 (656)
Q Consensus 615 ~~~ 617 (656)
.++
T Consensus 77 ~~p 79 (89)
T PF08444_consen 77 FMP 79 (89)
T ss_pred ecC
Confidence 865
No 88
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=97.03 E-value=0.0037 Score=65.73 Aligned_cols=77 Identities=18% Similarity=0.175 Sum_probs=54.8
Q ss_pred EEEeeCCeEEEEEEEEEe-CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCceec
Q 044767 538 VVLEKKRKIISAATVRVY-EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFSKM 616 (656)
Q Consensus 538 ~VLe~dg~iVg~a~lr~~-~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~~~ 616 (656)
+++..+|+||+.|.-... .+.+||. |+|+|+|||+|+++.+-.++...+.+.|+.-.+=-+-..-..+= .|+||+..
T Consensus 168 f~i~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~N~~S~~lA-~kLGf~~~ 245 (265)
T PF12746_consen 168 FCILHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCHNLASIALA-EKLGFHFD 245 (265)
T ss_dssp EEEEETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EESSHHHHHHH-HHCT--EE
T ss_pred EEEEECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCCCHHHHHHH-HHcCCccc
Confidence 455568999987766655 7778875 89999999999999999999999999998876644333333333 37999864
No 89
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.85 E-value=0.00049 Score=79.49 Aligned_cols=43 Identities=33% Similarity=0.902 Sum_probs=37.0
Q ss_pred ccccccccC---CceEeecCCCCc-cCCCCcCC--CCCCCCCCcCCCCC
Q 044767 337 DMCVVCLDG---GELICCDHCPCM-YHSSCLGL--KDIPYGDWFCPLCC 379 (656)
Q Consensus 337 d~C~vC~dg---GeLl~Cd~Cpra-fH~~Cl~l--~~~p~g~W~C~~C~ 379 (656)
--|.+|... .-||.||.|... ||.+||.+ -++|-+.|||++|.
T Consensus 216 ~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 216 VKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred ccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcch
Confidence 459999843 348999999998 99999995 47999999999997
No 90
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.83 E-value=0.00045 Score=72.88 Aligned_cols=36 Identities=39% Similarity=0.958 Sum_probs=30.8
Q ss_pred CCccccccc--cc-cccccccccccccceeeccCCcccccchhhh
Q 044767 400 DGLVRTCDQ--CE-HKFHTGCTRKSKRELKVKSQNKWFCSDRCEH 441 (656)
Q Consensus 400 ~~~ll~Cdq--C~-r~yH~~Cl~~~~~~l~~~p~g~WfC~~~C~~ 441 (656)
-+.|+.||. |+ .+||..|.. |...|.|.|||++ |..
T Consensus 229 yg~Mi~CDn~~C~~eWFH~~CVG-----L~~~PkgkWyC~~-C~~ 267 (274)
T KOG1973|consen 229 YGKMIGCDNPGCPIEWFHFTCVG-----LKTKPKGKWYCPR-CKA 267 (274)
T ss_pred cccccccCCCCCCcceEEEeccc-----cccCCCCcccchh-hhh
Confidence 467999997 99 999999985 5678999999996 765
No 91
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=96.79 E-value=0.0009 Score=64.52 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=50.9
Q ss_pred eeeEeEEEeccCcccCChHHHHHHH-HHHHHHHcCCcEEEEcCccchHHHhHhcCCceecCh
Q 044767 558 VAEIPFVATMFKYRRNGMCRLLMAE-LEKQLIALGVERLVLPSAPSVLNAWTTKFGFSKMTA 618 (656)
Q Consensus 558 ~AEI~~VAv~~~yRgqG~Gr~Lm~~-lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~~~~~ 618 (656)
.+.|-.+|+.|+||.||+|..|+.. |..+...-=+.+++|=+-.-+++||+ +|||+.+++
T Consensus 101 ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYE-r~gFk~vgp 161 (190)
T KOG4144|consen 101 NIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYE-RFGFKAVGP 161 (190)
T ss_pred ceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhH-hcCceeecc
Confidence 3678889999999999999999987 44444444677899999999999999 799999997
No 92
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=96.77 E-value=0.0015 Score=53.23 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=39.7
Q ss_pred EEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCc
Q 044767 564 VATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGF 613 (656)
Q Consensus 564 VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF 613 (656)
++|+|+|||+|+|+.||+.+++.+...|+. ....+..+|. ++||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~-~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYE-KNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHH-hcCC
Confidence 999999999999999999999999998887 5667778888 6888
No 93
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=96.68 E-value=0.0042 Score=56.08 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=50.5
Q ss_pred EEEeeCCeEEEEEEEEEe-CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcE
Q 044767 538 VVLEKKRKIISAATVRVY-EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVER 594 (656)
Q Consensus 538 ~VLe~dg~iVg~a~lr~~-~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~ 594 (656)
+++..+|+.+|.+..... .+..-|..-.|.+++||||+|+.|+....+.+++.|.+-
T Consensus 18 y~~~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~ki 75 (99)
T COG2388 18 YVLTDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKI 75 (99)
T ss_pred EEEecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeE
Confidence 467788988888877766 689999999999999999999999999999999988753
No 94
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.62 E-value=0.0008 Score=74.53 Aligned_cols=48 Identities=44% Similarity=1.173 Sum_probs=38.3
Q ss_pred ccccccc-----cCCceEeecCCCCccCCCCcCCC---CCCC-------CCCcCCCCC-------ccccC
Q 044767 337 DMCVVCL-----DGGELICCDHCPCMYHSSCLGLK---DIPY-------GDWFCPLCC-------CAICG 384 (656)
Q Consensus 337 d~C~vC~-----dgGeLl~Cd~CprafH~~Cl~l~---~~p~-------g~W~C~~C~-------C~iCg 384 (656)
.+|.||. +.|+++-||.|+-.+|..|+|.. .+|. .+|||.-|. |.+|-
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCP 189 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCP 189 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCC
Confidence 4799997 46899999999999999999832 3332 479999997 66664
No 95
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=96.61 E-value=0.0074 Score=59.34 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=56.4
Q ss_pred ccccc-eEEEEEeeCCeEEEEEEEEEeCcee---eEeEE--EeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccc
Q 044767 530 LNYVG-FYTVVLEKKRKIISAATVRVYEKVA---EIPFV--ATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPS 602 (656)
Q Consensus 530 ~~~~g-~y~~VLe~dg~iVg~a~lr~~~~~A---EI~~V--Av~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~ 602 (656)
-+|.. .+++....|+++||...+|...+.. +-+.| +|+|+.||+|||+.++.-+.+.|+++|++.+.+-+..+
T Consensus 63 ~g~V~~~~y~~v~~d~~ivG~i~lRh~Ln~~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~d 141 (174)
T COG3981 63 EGWVPASTYWAVDEDGQIVGFINLRHQLNDFLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKD 141 (174)
T ss_pred CCceeceeEEEEecCCcEEEEEEeeeecchHHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 33443 3444445579999999999873222 13444 89999999999999999999999999999999877753
No 96
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.017 Score=54.49 Aligned_cols=86 Identities=17% Similarity=0.293 Sum_probs=65.4
Q ss_pred eEEEEEeeC--CeEEEEEEEEEeC-----ceeeEeEEEeccCcccCChHHHHHHHHHHHHHH-cCCcEEEEcCcc---ch
Q 044767 535 FYTVVLEKK--RKIISAATVRVYE-----KVAEIPFVATMFKYRRNGMCRLLMAELEKQLIA-LGVERLVLPSAP---SV 603 (656)
Q Consensus 535 ~y~~VLe~d--g~iVg~a~lr~~~-----~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~-~gv~~l~L~A~~---~a 603 (656)
.+.++...+ +++||.+.+..+. +.++|...- .|.|+|+|+|...+.++.+++.+ +|+++|++...+ .+
T Consensus 66 ~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S 144 (187)
T COG1670 66 AFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEAS 144 (187)
T ss_pred eEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHH
Confidence 444444443 4999999998652 456666655 99999999999999999999887 799999886654 45
Q ss_pred HHHhHhcCCceecChHHHh
Q 044767 604 LNAWTTKFGFSKMTASERL 622 (656)
Q Consensus 604 ~~fw~~kfGF~~~~~~~~~ 622 (656)
...++ ++||+..+.....
T Consensus 145 ~rv~e-k~Gf~~eg~~~~~ 162 (187)
T COG1670 145 IRVYE-KLGFRLEGELRQH 162 (187)
T ss_pred HHHHH-HcCChhhhhhhhc
Confidence 56777 7999987754443
No 97
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=96.50 E-value=0.0072 Score=58.65 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=57.7
Q ss_pred eCCeEEEEEEEEEe-C-c--eeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCC---cEEEEcCccchHHHhHhcCCce
Q 044767 542 KKRKIISAATVRVY-E-K--VAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGV---ERLVLPSAPSVLNAWTTKFGFS 614 (656)
Q Consensus 542 ~dg~iVg~a~lr~~-~-~--~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv---~~l~L~A~~~a~~fw~~kfGF~ 614 (656)
.+++|-|+..=++- . + -+++.-++|.|+||+.|+|..||+-||......++ .-++...-.-|+.+|+ +|||.
T Consensus 49 p~~~imgyimgk~Eg~~~~wh~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYk-kLGY~ 127 (173)
T KOG3234|consen 49 PTGEIMGYIMGKVEGKDTEWHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYK-KLGYS 127 (173)
T ss_pred CCCceEEEEeeeccccCcceeeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHH-hcCce
Confidence 34677777655544 1 2 26899999999999999999999999999877643 4455566778999999 79997
Q ss_pred ec
Q 044767 615 KM 616 (656)
Q Consensus 615 ~~ 616 (656)
+.
T Consensus 128 ~Y 129 (173)
T KOG3234|consen 128 VY 129 (173)
T ss_pred EE
Confidence 63
No 98
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=96.49 E-value=0.064 Score=48.77 Aligned_cols=83 Identities=17% Similarity=0.079 Sum_probs=66.2
Q ss_pred hhhhHHHHHhhhccccccccccceEEEEEeeCCeEEEEEEEEEeCceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcC
Q 044767 512 GRDLIEDVIFNRRSELKHLNYVGFYTVVLEKKRKIISAATVRVYEKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALG 591 (656)
Q Consensus 512 ~~dl~~~~v~n~~s~~~r~~~~g~y~~VLe~dg~iVg~a~lr~~~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~g 591 (656)
..++.+++....... .....++++.+|++||++..-...+.+..-.++++++|+..+.|..|+..+.+.+.+.|
T Consensus 54 ~~~~~~~l~~~~~~~------~~~~l~~~~~~g~~va~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g 127 (142)
T PF13480_consen 54 SRDFFRDLLRSLAES------GRLRLFVLYDGGEPVAFALGFRHGGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERG 127 (142)
T ss_pred hHHHHHHHHHhhccC------CCEEEEEEEECCEEEEEEEEEEECCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCC
Confidence 345667775543211 12456678889999998866655889999999999999999999999999999999999
Q ss_pred CcEEEEcCc
Q 044767 592 VERLVLPSA 600 (656)
Q Consensus 592 v~~l~L~A~ 600 (656)
++.+-+-..
T Consensus 128 ~~~~d~g~g 136 (142)
T PF13480_consen 128 LRYFDFGGG 136 (142)
T ss_pred CCEEEECCC
Confidence 999887665
No 99
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.48 E-value=0.0022 Score=75.55 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=48.6
Q ss_pred eeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEE--cCccchHHHhHhcCCceecC
Q 044767 559 AEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVL--PSAPSVLNAWTTKFGFSKMT 617 (656)
Q Consensus 559 AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L--~A~~~a~~fw~~kfGF~~~~ 617 (656)
+.|-||||+|++|++|||++||+.+++++. .|+.-+-. -+.++..+||. +.||.++-
T Consensus 532 ~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~-rnGF~pVh 590 (758)
T COG1444 532 WRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWL-RNGFVPVH 590 (758)
T ss_pred eeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHH-HcCeEEEE
Confidence 568899999999999999999999999996 45555444 56789999999 79999875
No 100
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.47 E-value=0.011 Score=62.38 Aligned_cols=81 Identities=22% Similarity=0.338 Sum_probs=69.6
Q ss_pred eEEEEEeeC-CeEEEEEEEEEeCceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCc
Q 044767 535 FYTVVLEKK-RKIISAATVRVYEKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGF 613 (656)
Q Consensus 535 ~y~~VLe~d-g~iVg~a~lr~~~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF 613 (656)
.|+++++.+ ++||+|+++- . --|..|||++.+||.|+.-.|+.++..++-++|..+|+|-+-++-..++. .+||
T Consensus 36 e~~v~~~~~~~~iiacGsia--G--nvikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk-~~GF 110 (352)
T COG3053 36 EYFVAIYRDNEEIIACGSIA--G--NVIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFK-QCGF 110 (352)
T ss_pred eEEEEEEcCCCcEEEecccc--c--ceeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHH-hCCc
Confidence 556666655 9999999863 1 24888999999999999999999999999999999999999999998888 6999
Q ss_pred eecChHH
Q 044767 614 SKMTASE 620 (656)
Q Consensus 614 ~~~~~~~ 620 (656)
..+...+
T Consensus 111 ~~i~~~~ 117 (352)
T COG3053 111 SEIASAE 117 (352)
T ss_pred eEeeccC
Confidence 9887543
No 101
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=96.33 E-value=0.033 Score=52.49 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=57.1
Q ss_pred EEEEeeCCeEEEEEEEEEeCceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCcc-------chHHHhHh
Q 044767 537 TVVLEKKRKIISAATVRVYEKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAP-------SVLNAWTT 609 (656)
Q Consensus 537 ~~VLe~dg~iVg~a~lr~~~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~-------~a~~fw~~ 609 (656)
.+++.=|++++|++.+.+..+.++|..+.|++-=||+|.|..||+++.+.+ -++....|.+.. .+..|-.
T Consensus 40 l~aArFNdRlLgAv~v~~~~~~~~L~~l~VRevTRrRGVG~yLlee~~rq~--p~i~~w~l~~~~~~~~~~~~~~~Fm~- 116 (128)
T PF12568_consen 40 LFAARFNDRLLGAVKVTISGQQAELSDLCVREVTRRRGVGLYLLEEVLRQL--PDIKHWWLADEGVEPQDRAVMAAFMQ- 116 (128)
T ss_dssp EEEEEETTEEEEEEEEEEETTEEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHHHHHH-
T ss_pred EEEEEechheeeeEEEEEcCcceEEeeEEEeeccccccHHHHHHHHHHHHC--CCCcEEEEecCCCcccchHHHHHHHH-
Confidence 456677999999998887788999999999999999999999999999988 467777775552 2235666
Q ss_pred cCCceecCh
Q 044767 610 KFGFSKMTA 618 (656)
Q Consensus 610 kfGF~~~~~ 618 (656)
.+||...++
T Consensus 117 a~GF~~~~~ 125 (128)
T PF12568_consen 117 ACGFSAQSD 125 (128)
T ss_dssp HHT-EE-SS
T ss_pred HcCccccCC
Confidence 699977553
No 102
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=96.20 E-value=0.022 Score=59.08 Aligned_cols=93 Identities=15% Similarity=0.224 Sum_probs=69.9
Q ss_pred ccccccccceEEEEEee-CCeEEEEEEEEEe-------------------------------CceeeEeEEEeccCcccC
Q 044767 526 ELKHLNYVGFYTVVLEK-KRKIISAATVRVY-------------------------------EKVAEIPFVATMFKYRRN 573 (656)
Q Consensus 526 ~~~r~~~~g~y~~VLe~-dg~iVg~a~lr~~-------------------------------~~~AEI~~VAv~~~yRgq 573 (656)
+...+|-...|+++... +|++||++++... .+++|+.|.||.++||+.
T Consensus 47 E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r 126 (241)
T TIGR03694 47 ETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRR 126 (241)
T ss_pred cCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHhCC
Confidence 44555644444444433 5899999998641 147899999999999974
Q ss_pred --------C--------------------hHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCc--eecChH
Q 044767 574 --------G--------------------MCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGF--SKMTAS 619 (656)
Q Consensus 574 --------G--------------------~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF--~~~~~~ 619 (656)
| +...|+.++.+++...|++.++.-+.+.....+. ++|+ +.+++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~l~r~l~-r~G~~~~~lG~~ 201 (241)
T TIGR03694 127 KGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGITHWYAIMEPRLARLLS-RFGIQFRQVGPP 201 (241)
T ss_pred cccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHH-HhCCceEEcCCC
Confidence 2 4467999999999999999999999998888887 7997 455543
No 103
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.13 E-value=0.0021 Score=61.87 Aligned_cols=26 Identities=38% Similarity=0.829 Sum_probs=23.8
Q ss_pred ccccccccccccceeeccCCcccccchhhh
Q 044767 412 KFHTGCTRKSKRELKVKSQNKWFCSDRCEH 441 (656)
Q Consensus 412 ~yH~~Cl~~~~~~l~~~p~g~WfC~~~C~~ 441 (656)
.||..||+| +|..+|+|.|+||. |..
T Consensus 1 g~H~~CL~P---pl~~~P~g~W~Cp~-C~~ 26 (148)
T cd04718 1 GFHLCCLRP---PLKEVPEGDWICPF-CEV 26 (148)
T ss_pred CcccccCCC---CCCCCCCCCcCCCC-CcC
Confidence 599999999 89999999999997 875
No 104
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.07 E-value=0.0025 Score=65.79 Aligned_cols=36 Identities=36% Similarity=1.025 Sum_probs=30.4
Q ss_pred Ccccccc--cccc-ccccccccccccceeeccCCcccccchhhhh
Q 044767 401 GLVRTCD--QCEH-KFHTGCTRKSKRELKVKSQNKWFCSDRCEHV 442 (656)
Q Consensus 401 ~~ll~Cd--qC~r-~yH~~Cl~~~~~~l~~~p~g~WfC~~~C~~i 442 (656)
|.|+.|| .|.+ +||..|.. |++.|.|.|||+. |+.+
T Consensus 232 GqMVaCDn~nCkrEWFH~~CVG-----Lk~pPKG~WYC~e-Ck~~ 270 (271)
T COG5034 232 GQMVACDNANCKREWFHLECVG-----LKEPPKGKWYCPE-CKKA 270 (271)
T ss_pred ccceecCCCCCchhheeccccc-----cCCCCCCcEeCHH-hHhc
Confidence 6699999 6986 89999985 6789999999985 9863
No 105
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.03 E-value=0.00096 Score=49.38 Aligned_cols=34 Identities=41% Similarity=1.133 Sum_probs=20.4
Q ss_pred CceEeecCCCCccCCCCcCCCCCCCC-CCcCCCCC
Q 044767 346 GELICCDHCPCMYHSSCLGLKDIPYG-DWFCPLCC 379 (656)
Q Consensus 346 GeLl~Cd~CprafH~~Cl~l~~~p~g-~W~C~~C~ 379 (656)
..|+.|+.|.-++|..|.++...+++ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 46899999999999999999888887 89998773
No 106
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=95.98 E-value=0.0022 Score=71.14 Aligned_cols=46 Identities=35% Similarity=0.936 Sum_probs=36.8
Q ss_pred ccccCCCCCCCCccccccCCCCccccccccccccccccccccccceeeccC----Ccccccchhh
Q 044767 380 CAICGDGKFKQRTLHSVDDDDGLVRTCDQCEHKFHTGCTRKSKRELKVKSQ----NKWFCSDRCE 440 (656)
Q Consensus 380 C~iCg~~~~~~~~~~~v~~~~~~ll~CdqC~r~yH~~Cl~~~~~~l~~~p~----g~WfC~~~C~ 440 (656)
|.+|.+.. +.-.++.||.|...||.+||.| ||..+|. ..|.|++ |.
T Consensus 547 CgiCkks~-----------dQHll~~CDtC~lhYHlGCL~P---PLTR~Pkk~kn~gWqCsE-Cd 596 (707)
T KOG0957|consen 547 CGICKKST-----------DQHLLTQCDTCHLHYHLGCLSP---PLTRLPKKNKNFGWQCSE-CD 596 (707)
T ss_pred eeeeccch-----------hhHHHhhcchhhceeeccccCC---ccccCcccccCcceeecc-cc
Confidence 77887754 4456889999999999999999 7766664 4799997 83
No 107
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=95.66 E-value=0.017 Score=62.54 Aligned_cols=78 Identities=24% Similarity=0.301 Sum_probs=61.9
Q ss_pred EEEeeCCeEEEEEEEEEe--------CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHh
Q 044767 538 VVLEKKRKIISAATVRVY--------EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTT 609 (656)
Q Consensus 538 ~VLe~dg~iVg~a~lr~~--------~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~ 609 (656)
.|++.+.++++-..+..+ ...+-|.-||+.|+|||+|+-+.||....+..++.|+.-.+|+... .+||.
T Consensus 42 ~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P~s--~~iYr- 118 (389)
T COG4552 42 YVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHPFS--GGIYR- 118 (389)
T ss_pred eEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEeccCc--hhhHh-
Confidence 366777777543333211 1357788999999999999999999999999999999999998775 45798
Q ss_pred cCCceecCh
Q 044767 610 KFGFSKMTA 618 (656)
Q Consensus 610 kfGF~~~~~ 618 (656)
||||...+.
T Consensus 119 KfGye~asn 127 (389)
T COG4552 119 KFGYEYASN 127 (389)
T ss_pred hccccccce
Confidence 899988764
No 108
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=95.51 E-value=0.11 Score=51.76 Aligned_cols=115 Identities=15% Similarity=0.166 Sum_probs=82.8
Q ss_pred HHHhhHHHHHhhhcCCCCCC--CchhhhHHHHHhhhccccccccccceEEEEEeeCCeEEEEEEEEEe------------
Q 044767 490 RKLHGAVEVMHECFEPAKEP--LTGRDLIEDVIFNRRSELKHLNYVGFYTVVLEKKRKIISAATVRVY------------ 555 (656)
Q Consensus 490 ~kl~~al~I~~e~F~Pi~dp--~s~~dl~~~~v~n~~s~~~r~~~~g~y~~VLe~dg~iVg~a~lr~~------------ 555 (656)
..+.....+=++.| ++. |. +....+-++..+|-....|+|...+|+++|++++...
T Consensus 8 ~~l~~~~rlR~~vF---v~rlgW~-------v~~~dg~E~DqyD~~~~~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ 77 (182)
T PF00765_consen 8 RLLEEMFRLRHRVF---VDRLGWD-------VPCEDGMEIDQYDDPDAVYLVALDDGRVVGCARLLPTTGPYMLSDVFPH 77 (182)
T ss_dssp HHHHHHHHHHHHHH---TTCSCCC-------HHCCTSEE--TTGCTT-EEEEEEETTEEEEEEEEEETTS--HHHHCTGG
T ss_pred HHHHHHHHHHHHHH---HHhhCCC-------CcCCCCcEeeecCCCCCeEEEEEECCEEEEEeeeccCCCcchhhhHHHH
Confidence 56777788888999 543 43 1123345666777667777777778999999988742
Q ss_pred ----------CceeeEeEEEeccCccc------CChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCcee
Q 044767 556 ----------EKVAEIPFVATMFKYRR------NGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFSK 615 (656)
Q Consensus 556 ----------~~~AEI~~VAv~~~yRg------qG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~~ 615 (656)
.+++|+.|.+|+++.++ .-+...|+.++.+++.+.|++.++.-+......++. ++||..
T Consensus 78 ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~-r~G~~~ 152 (182)
T PF00765_consen 78 LLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVVDPAMERILR-RAGWPV 152 (182)
T ss_dssp GHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEEEHHHHHHHH-HCT-EE
T ss_pred HhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEEChHHHHHHH-HcCCce
Confidence 13589999999998542 136789999999999999999999988888888888 699965
No 109
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.04 E-value=0.016 Score=55.94 Aligned_cols=30 Identities=43% Similarity=1.110 Sum_probs=25.4
Q ss_pred ccCCCCcC--CCCCCCCCCcCCCCCccccCCC
Q 044767 357 MYHSSCLG--LKDIPYGDWFCPLCCCAICGDG 386 (656)
Q Consensus 357 afH~~Cl~--l~~~p~g~W~C~~C~C~iCg~~ 386 (656)
.||..||. +..+|+|+|+||.|.....+..
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~ 32 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQS 32 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCCCc
Confidence 49999998 6799999999999997655544
No 110
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=95.02 E-value=0.15 Score=51.79 Aligned_cols=118 Identities=10% Similarity=0.099 Sum_probs=82.1
Q ss_pred HHhhHHHHHhhhcCCCCCC--CchhhhHHHHHhhhccccccccccceEEEE-EeeCCeEEEEEEEEEe------------
Q 044767 491 KLHGAVEVMHECFEPAKEP--LTGRDLIEDVIFNRRSELKHLNYVGFYTVV-LEKKRKIISAATVRVY------------ 555 (656)
Q Consensus 491 kl~~al~I~~e~F~Pi~dp--~s~~dl~~~~v~n~~s~~~r~~~~g~y~~V-Le~dg~iVg~a~lr~~------------ 555 (656)
.+.++..+=++.| .+. |. +....+-+...+|-...+++| ...+|++||++++-..
T Consensus 17 ~l~~~~rLR~~VF---~~elgW~-------~~~~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~ 86 (207)
T PRK13834 17 LLKQMHRLRARVF---GGRLGWD-------VSITDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQ 86 (207)
T ss_pred HHHHHHHHHHHHh---ccccCCC-------CCCCCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHH
Confidence 4667777778888 432 32 111233455667766666665 4467899999887321
Q ss_pred ----------CceeeEeEEEeccCcc---cCC----hHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCce--ec
Q 044767 556 ----------EKVAEIPFVATMFKYR---RNG----MCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFS--KM 616 (656)
Q Consensus 556 ----------~~~AEI~~VAv~~~yR---gqG----~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~--~~ 616 (656)
.+++|+.|.+|+++++ +.+ +...|+..+.+++...|++.++.-..+.....+. ++||. ++
T Consensus 87 l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~-r~G~~~~~l 165 (207)
T PRK13834 87 LLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILA-RAGWPMQRL 165 (207)
T ss_pred hcCCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH-HcCCCeEEC
Confidence 2478999999999863 222 5578999999999999999999877777777776 68974 45
Q ss_pred ChH
Q 044767 617 TAS 619 (656)
Q Consensus 617 ~~~ 619 (656)
++.
T Consensus 166 G~~ 168 (207)
T PRK13834 166 GEP 168 (207)
T ss_pred CCC
Confidence 543
No 111
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=94.95 E-value=0.0062 Score=76.52 Aligned_cols=50 Identities=30% Similarity=0.763 Sum_probs=42.4
Q ss_pred ccccCCCCCCCCccccccCCCCccccccccccccccccccccccceeeccCCcccccchhhhhHH
Q 044767 380 CAICGDGKFKQRTLHSVDDDDGLVRTCDQCEHKFHTGCTRKSKRELKVKSQNKWFCSDRCEHVFS 444 (656)
Q Consensus 380 C~iCg~~~~~~~~~~~v~~~~~~ll~CdqC~r~yH~~Cl~~~~~~l~~~p~g~WfC~~~C~~i~~ 444 (656)
|.+|.... .+..++.|+.|..+||.+|++| .+...|.+.|||+. |..-..
T Consensus 1111 c~~cr~k~-----------~~~~m~lc~~c~~~~h~~C~rp---~~~~~~~~dW~C~~-c~~e~~ 1160 (1404)
T KOG1245|consen 1111 CKVCRRKK-----------QDEKMLLCDECLSGFHLFCLRP---ALSSVPPGDWMCPS-CRKEHR 1160 (1404)
T ss_pred hhhhhhcc-----------cchhhhhhHhhhhhHHHHhhhh---hhccCCcCCccCCc-cchhhh
Confidence 77776653 4467999999999999999998 78899999999997 987654
No 112
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=94.72 E-value=0.17 Score=50.64 Aligned_cols=98 Identities=15% Similarity=0.236 Sum_probs=65.8
Q ss_pred eEEEEEeeCCeEEEEEEEEEe-C-----c--eeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHH
Q 044767 535 FYTVVLEKKRKIISAATVRVY-E-----K--VAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNA 606 (656)
Q Consensus 535 ~y~~VLe~dg~iVg~a~lr~~-~-----~--~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~f 606 (656)
++.+++...+++|++..+-.+ . + +.-+++--+.|+|||+|+++ |+..+...-...+-...++.+...+.++
T Consensus 47 l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~k-l~~~~~~~~~~~~~~N~~~~~~~~~~~~ 125 (181)
T PF06852_consen 47 LVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMK-LQDDICMDELDSVDDNSVAQGNVKMSNF 125 (181)
T ss_pred EEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHH-HHHHHHHHHhccCCCceeeecCHHHHHH
Confidence 334444555678887766443 1 2 66788889999999999996 5555544332335566777888899999
Q ss_pred hHhcCCceecCh-HHHhccccceeEeeC
Q 044767 607 WTTKFGFSKMTA-SERLNYLNYTFLDFQ 633 (656)
Q Consensus 607 w~~kfGF~~~~~-~~~~~~~~~~~m~F~ 633 (656)
|..-|||...+. -.....++..=|..|
T Consensus 126 w~k~~G~~~~~h~~~y~S~y~~~d~~IP 153 (181)
T PF06852_consen 126 WHKMFGFDDYGHDWYYVSYYDPDDVKIP 153 (181)
T ss_pred HHHHhCCCCCccceeEeeeccHHHeecc
Confidence 998899988887 333344433334444
No 113
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=93.85 E-value=0.025 Score=69.03 Aligned_cols=48 Identities=27% Similarity=0.816 Sum_probs=37.5
Q ss_pred CccccCCCCCCCCccccccCCCCccccccccccccccccccccccceeeccCCcccccchhhh
Q 044767 379 CCAICGDGKFKQRTLHSVDDDDGLVRTCDQCEHKFHTGCTRKSKRELKVKSQNKWFCSDRCEH 441 (656)
Q Consensus 379 ~C~iCg~~~~~~~~~~~v~~~~~~ll~CdqC~r~yH~~Cl~~~~~~l~~~p~g~WfC~~~C~~ 441 (656)
.|.+|.... +.+-+.+++||.|+.++|..|.. ++-+|+|.|+|-. |..
T Consensus 221 ~C~iC~~~~---------~~n~n~ivfCD~Cnl~VHq~Cyg-----i~~ipeg~WlCr~-Cl~ 268 (1051)
T KOG0955|consen 221 VCCICLDGE---------CQNSNVIVFCDGCNLAVHQECYG-----IPFIPEGQWLCRR-CLQ 268 (1051)
T ss_pred cceeecccc---------cCCCceEEEcCCCcchhhhhccC-----CCCCCCCcEeehh-hcc
Confidence 467777765 22446699999999999999987 3457899999996 854
No 114
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=93.75 E-value=0.056 Score=60.42 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=46.9
Q ss_pred ccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCceecCh
Q 044767 567 MFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFSKMTA 618 (656)
Q Consensus 567 ~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~~~~~ 618 (656)
...+|.+|||+.||++.|++|++.+.++|.+-+..-+...|. ||||...++
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~-k~GY~~~gp 509 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYR-KLGYELDGP 509 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHH-HhCccccCC
Confidence 367999999999999999999999999999999999999998 899988765
No 115
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=93.17 E-value=0.022 Score=71.87 Aligned_cols=45 Identities=38% Similarity=1.002 Sum_probs=39.0
Q ss_pred ccccccccccC---CceEeecCCCCccCCCCcC--CCCCCCCCCcCCCCC
Q 044767 335 TYDMCVVCLDG---GELICCDHCPCMYHSSCLG--LKDIPYGDWFCPLCC 379 (656)
Q Consensus 335 ndd~C~vC~dg---GeLl~Cd~CprafH~~Cl~--l~~~p~g~W~C~~C~ 379 (656)
....|.+|... .+++.|+.|...||..|+- +..+|.|+|+|+.|+
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~ 1156 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCR 1156 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccc
Confidence 34569999853 3589999999999999998 679999999999998
No 116
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=92.59 E-value=1.1 Score=44.09 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=50.5
Q ss_pred cccccceEEEEEee--CCeEEEEEE-----EEEe---CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEE
Q 044767 529 HLNYVGFYTVVLEK--KRKIISAAT-----VRVY---EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLV 596 (656)
Q Consensus 529 r~~~~g~y~~VLe~--dg~iVg~a~-----lr~~---~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~ 596 (656)
...|...+|+.+.. .+++||+.+ +++. ...+||.++.|++.+|.++++=.|+++|-+.+...|+-.-+
T Consensus 71 pPg~~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qAv 148 (162)
T PF01233_consen 71 PPGWKKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQAV 148 (162)
T ss_dssp STT--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEE
T ss_pred CcCCccceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceeee
Confidence 33456677877754 689988754 4444 36789999999999999999999999999999888876554
No 117
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=92.53 E-value=0.043 Score=61.59 Aligned_cols=43 Identities=35% Similarity=0.960 Sum_probs=34.5
Q ss_pred ccccccccC-----CceEeecCCCCccCCCCcCC------CCCCCCCCcCCCCC
Q 044767 337 DMCVVCLDG-----GELICCDHCPCMYHSSCLGL------KDIPYGDWFCPLCC 379 (656)
Q Consensus 337 d~C~vC~dg-----GeLl~Cd~CprafH~~Cl~l------~~~p~g~W~C~~C~ 379 (656)
-.|.+|..| ..|+.|+.|...||..|+.. -.-+.+.|+|..|.
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~ 222 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCN 222 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhc
Confidence 349999843 46999999999999999972 24577889998886
No 118
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=91.78 E-value=1.7 Score=46.69 Aligned_cols=97 Identities=10% Similarity=0.048 Sum_probs=69.7
Q ss_pred hhhHHHHHhhhccccccccccceEEEEEe-eCCeEEEEEEEEEeCceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcC
Q 044767 513 RDLIEDVIFNRRSELKHLNYVGFYTVVLE-KKRKIISAATVRVYEKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALG 591 (656)
Q Consensus 513 ~dl~~~~v~n~~s~~~r~~~~g~y~~VLe-~dg~iVg~a~lr~~~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~g 591 (656)
.++.+.+...... ....++++ .+|++||.+.+....+.+.....+..+++|..+-+..|+-++++.+.+.|
T Consensus 181 ~~~f~~l~~~~~~--------~~~l~~a~~~~g~~va~~l~~~~~~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G 252 (330)
T TIGR03019 181 RRYFRLLKDVFGE--------DCEVLTVRLGDGVVASAVLSFYFRDEVLPYYAGGLREARDVAANDLMYWELMRRACERG 252 (330)
T ss_pred HHHHHHHHHhccc--------CEEEEEEEeCCCCEEEEEEEEEeCCEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCC
Confidence 5666666543321 12334556 78999888766555666666678899999999999999999999999999
Q ss_pred CcEEEEcCccc--hHHHhHhcCCceecC
Q 044767 592 VERLVLPSAPS--VLNAWTTKFGFSKMT 617 (656)
Q Consensus 592 v~~l~L~A~~~--a~~fw~~kfGF~~~~ 617 (656)
++.+-+-.... -.-.+.++|||+++.
T Consensus 253 ~~~fDfG~s~~~~G~~~FK~~~G~~~~~ 280 (330)
T TIGR03019 253 LRVFDFGRSKRGTGPFKFKKNWGFEPQP 280 (330)
T ss_pred CcEEEcCCCCCCCccHHHHhcCCCeecc
Confidence 99999976532 222344578998754
No 119
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=91.58 E-value=0.091 Score=60.81 Aligned_cols=37 Identities=27% Similarity=0.773 Sum_probs=32.4
Q ss_pred CCCcccccc--ccccccccccccccccceeeccCCcccccchhhh
Q 044767 399 DDGLVRTCD--QCEHKFHTGCTRKSKRELKVKSQNKWFCSDRCEH 441 (656)
Q Consensus 399 ~~~~ll~Cd--qC~r~yH~~Cl~~~~~~l~~~p~g~WfC~~~C~~ 441 (656)
.++.|+.|| .|.-+.|..|.. +..+|.|+|||-+ |..
T Consensus 18 aeNPLVYCDG~nCsVAVHQaCYG-----IvqVPtGpWfCrK-Ces 56 (900)
T KOG0956|consen 18 AENPLVYCDGHNCSVAVHQACYG-----IVQVPTGPWFCRK-CES 56 (900)
T ss_pred ccCceeeecCCCceeeeehhcce-----eEecCCCchhhhh-hhh
Confidence 567899999 699999999975 5789999999997 875
No 120
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=91.27 E-value=0.086 Score=58.96 Aligned_cols=46 Identities=24% Similarity=0.675 Sum_probs=35.6
Q ss_pred ccccCCCCCCCCccccccCCCCccccccccccccccccccccccceeeccCCcccccchhh
Q 044767 380 CAICGDGKFKQRTLHSVDDDDGLVRTCDQCEHKFHTGCTRKSKRELKVKSQNKWFCSDRCE 440 (656)
Q Consensus 380 C~iCg~~~~~~~~~~~v~~~~~~ll~CdqC~r~yH~~Cl~~~~~~l~~~p~g~WfC~~~C~ 440 (656)
|.+|...+.+ +-+.+++||.|+-+.|..|... .-+|+|.|+|-+ |-
T Consensus 196 C~~c~~t~~e---------N~naiVfCdgC~i~VHq~CYGI-----~f~peG~WlCrk-Ci 241 (669)
T COG5141 196 CTKCTSTHNE---------NSNAIVFCDGCEICVHQSCYGI-----QFLPEGFWLCRK-CI 241 (669)
T ss_pred hHhccccccC---------CcceEEEecCcchhhhhhcccc-----eecCcchhhhhh-hc
Confidence 5566665422 4467999999999999999864 568999999997 63
No 121
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=90.66 E-value=0.1 Score=60.82 Aligned_cols=48 Identities=21% Similarity=0.695 Sum_probs=37.5
Q ss_pred CccccCCCCCCCCccccccCCCCccccccccccccccccccccccceeeccCCcccccchhhh
Q 044767 379 CCAICGDGKFKQRTLHSVDDDDGLVRTCDQCEHKFHTGCTRKSKRELKVKSQNKWFCSDRCEH 441 (656)
Q Consensus 379 ~C~iCg~~~~~~~~~~~v~~~~~~ll~CdqC~r~yH~~Cl~~~~~~l~~~p~g~WfC~~~C~~ 441 (656)
.|.+|..++ +.+.+.|++||.|.--.|..|.. +.++|.+.|.|.. |.-
T Consensus 273 iCDvCrspD---------~e~~neMVfCd~Cn~cVHqaCyG-----Ile~p~gpWlCr~-Cal 320 (893)
T KOG0954|consen 273 ICDVCRSPD---------SEEANEMVFCDKCNICVHQACYG-----ILEVPEGPWLCRT-CAL 320 (893)
T ss_pred eeceecCCC---------ccccceeEEeccchhHHHHhhhc-----eeecCCCCeeehh-ccc
Confidence 356666665 22456799999999999999975 4678999999996 864
No 122
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=89.72 E-value=0.18 Score=45.57 Aligned_cols=74 Identities=26% Similarity=0.473 Sum_probs=45.5
Q ss_pred cccccccCCceEeecCCCCccCCCCcCC-CC--CCCCC----Cc----C---CCCCccccCCCCCCCCccccccCCCCcc
Q 044767 338 MCVVCLDGGELICCDHCPCMYHSSCLGL-KD--IPYGD----WF----C---PLCCCAICGDGKFKQRTLHSVDDDDGLV 403 (656)
Q Consensus 338 ~C~vC~dgGeLl~Cd~CprafH~~Cl~l-~~--~p~g~----W~----C---~~C~C~iCg~~~~~~~~~~~v~~~~~~l 403 (656)
.|.+|...|..+--..-....|..|.-. ++ +.++. +. - ..=.|.+|+.. .|..
T Consensus 2 ~C~lC~~~~Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~~~C~iC~~~-------------~G~~ 68 (110)
T PF13832_consen 2 SCVLCPKRGGALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFKLKCSICGKS-------------GGAC 68 (110)
T ss_pred ccEeCCCCCCcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhcCCcCcCCCCC-------------Ccee
Confidence 4888886544444444577889999651 10 00000 00 0 01237777764 3568
Q ss_pred ccccc--cccccccccccccccc
Q 044767 404 RTCDQ--CEHKFHTGCTRKSKRE 424 (656)
Q Consensus 404 l~Cdq--C~r~yH~~Cl~~~~~~ 424 (656)
+.|.. |...||+.|....+..
T Consensus 69 i~C~~~~C~~~fH~~CA~~~g~~ 91 (110)
T PF13832_consen 69 IKCSHPGCSTAFHPTCARKAGLY 91 (110)
T ss_pred EEcCCCCCCcCCCHHHHHHCCCe
Confidence 89998 9999999999876643
No 123
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=89.55 E-value=1.1 Score=45.22 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=49.9
Q ss_pred HHHhhHHHHHhhhcCCCCCCCchhhhHHHHHhhhccccccccccceEEEEE-e-eCC--eEEEEEEEEEe-CceeeEeEE
Q 044767 490 RKLHGAVEVMHECFEPAKEPLTGRDLIEDVIFNRRSELKHLNYVGFYTVVL-E-KKR--KIISAATVRVY-EKVAEIPFV 564 (656)
Q Consensus 490 ~kl~~al~I~~e~F~Pi~dp~s~~dl~~~~v~n~~s~~~r~~~~g~y~~VL-e-~dg--~iVg~a~lr~~-~~~AEI~~V 564 (656)
....+.|-++.-.| .|.- .+ + +|-..|.+.|+ + +++ .+||+=+=-.. .+.--+.-|
T Consensus 26 ~~yCqnLcLlaKLF---Ld~K---tl-----------y--ydv~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~~NLsCI 86 (188)
T PF01853_consen 26 KLYCQNLCLLAKLF---LDHK---TL-----------Y--YDVDPFLFYVLTEKDDDGFHIVGYFSKEKESWDNNNLSCI 86 (188)
T ss_dssp HHHHHHHHHHHHTT----SSG---CC-----------T--T-STTEEEEEEEEEETTEEEEEEEEEEESS-TT-EEESEE
T ss_pred chHHHHHHHHHHHH---hhCe---EE-----------E--eecCceEEEEEEEecCccceeEEEEEEEecccCCeeEeeh
Confidence 46677788888889 4421 11 1 22233443343 3 332 36555332111 233467789
Q ss_pred EeccCcccCChHHHHHHHHHHHHHHcC
Q 044767 565 ATMFKYRRNGMCRLLMAELEKQLIALG 591 (656)
Q Consensus 565 Av~~~yRgqG~Gr~Lm~~lE~~l~~~g 591 (656)
-|.|.||++|+|+.||+.-=++++..|
T Consensus 87 l~lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 87 LTLPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp EE-GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred hhcchhhhcchhhhhhhhHHHHhhccC
Confidence 999999999999999998888887765
No 124
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=88.44 E-value=1 Score=42.81 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=54.0
Q ss_pred CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCc----cchHHHhHhcCCceecChHHHh
Q 044767 556 EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSA----PSVLNAWTTKFGFSKMTASERL 622 (656)
Q Consensus 556 ~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~----~~a~~fw~~kfGF~~~~~~~~~ 622 (656)
+...-|-||.|....||.|++|.|-+-+.+.++..|...|+++-- ..|-..+...|||.++++.+.-
T Consensus 82 e~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ih 152 (167)
T COG3818 82 ENFFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIH 152 (167)
T ss_pred CceEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEEe
Confidence 566778999999999999999999999999999999999888433 2333444458999999976543
No 125
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=88.00 E-value=2.7 Score=39.52 Aligned_cols=84 Identities=11% Similarity=0.024 Sum_probs=59.6
Q ss_pred EeeCCeEEEEEEEEEe-C----ceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCce
Q 044767 540 LEKKRKIISAATVRVY-E----KVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFS 614 (656)
Q Consensus 540 Le~dg~iVg~a~lr~~-~----~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~ 614 (656)
..-+|.|||.+.+.-- . -..-|.-+-+...|||+|+||...++|-...+. --+-++|+--.-|..||. ++-+.
T Consensus 42 ~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~g-~w~Va~i~EN~PA~~fwK-~~~~t 119 (143)
T COG5628 42 FRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAWG-VWQVATVRENTPARAFWK-RVAET 119 (143)
T ss_pred EEECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhhc-eEEEEEeccCChhHHHHH-hhhcc
Confidence 3467889999866432 1 112355566777899999999999999887654 345577888889999999 57764
Q ss_pred e-cChHHHhccc
Q 044767 615 K-MTASERLNYL 625 (656)
Q Consensus 615 ~-~~~~~~~~~~ 625 (656)
- +..|+++..+
T Consensus 120 ~~i~~E~r~d~~ 131 (143)
T COG5628 120 YPVVEEDRQDAR 131 (143)
T ss_pred cccchhhhhccc
Confidence 3 5556655554
No 126
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=87.85 E-value=0.4 Score=53.67 Aligned_cols=63 Identities=22% Similarity=0.477 Sum_probs=43.4
Q ss_pred CCcCCCCCccccCCCCCCCCccccccCCCCccccccccccccccccccccccc----eeec----cCCcccccchhhhhH
Q 044767 372 DWFCPLCCCAICGDGKFKQRTLHSVDDDDGLVRTCDQCEHKFHTGCTRKSKRE----LKVK----SQNKWFCSDRCEHVF 443 (656)
Q Consensus 372 ~W~C~~C~C~iCg~~~~~~~~~~~v~~~~~~ll~CdqC~r~yH~~Cl~~~~~~----l~~~----p~g~WfC~~~C~~i~ 443 (656)
+=||..|.|.+|.+.+++. ++-..+.||.|+.+.|..|.-..... .... .++.++|-. |....
T Consensus 123 ~gFC~~C~C~iC~kfD~~~--------n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~-C~~~s 193 (446)
T PF07227_consen 123 PGFCRRCMCCICSKFDDNK--------NTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRA-CGKTS 193 (446)
T ss_pred CCccccCCccccCCcccCC--------CCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccC-CCChh
Confidence 3589999999998865433 34557999999999999997553311 1111 244677775 98643
No 127
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=87.23 E-value=1.3 Score=42.99 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=44.6
Q ss_pred eeeEeEEEeccCcccCChHHHHHHHHHHHHHHc-CCcEEEEcCcc---chHHHhHhcCCceec
Q 044767 558 VAEIPFVATMFKYRRNGMCRLLMAELEKQLIAL-GVERLVLPSAP---SVLNAWTTKFGFSKM 616 (656)
Q Consensus 558 ~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~-gv~~l~L~A~~---~a~~fw~~kfGF~~~ 616 (656)
++|+..+-.-|..||+|+|+..|.++.+++.+. ++.+....... -.+.++. ||+|..+
T Consensus 107 ~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFk-k~~f~q~ 168 (185)
T KOG4135|consen 107 TGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFK-KFLFTQV 168 (185)
T ss_pred eeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHH-Hhhheee
Confidence 467777778899999999999999999998864 77776665533 3345666 7999764
No 128
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=87.12 E-value=0.54 Score=40.04 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=24.3
Q ss_pred eEeEEEeccCcccCChHHHHHHHHHHHH
Q 044767 560 EIPFVATMFKYRRNGMCRLLMAELEKQL 587 (656)
Q Consensus 560 EI~~VAv~~~yRgqG~Gr~Lm~~lE~~l 587 (656)
-|.+|-|.|.+|++||+..||+++-+..
T Consensus 7 GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 7 GISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 4778899999999999999999887653
No 129
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=86.08 E-value=1.7 Score=46.30 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=34.2
Q ss_pred CeEEEEEEEEEe-CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcC
Q 044767 544 RKIISAATVRVY-EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALG 591 (656)
Q Consensus 544 g~iVg~a~lr~~-~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~g 591 (656)
..+||+=+=-.. .+.--+.-|-|.|.||++|+|+.||+--=++.+..|
T Consensus 140 ~h~vGYFSKEK~s~~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 140 SHIVGYFSKEKVSAEDYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred cEEEEEeceeccccCCCcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 357665321111 122347889999999999999999998888877665
No 130
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=85.99 E-value=0.87 Score=49.49 Aligned_cols=50 Identities=24% Similarity=0.357 Sum_probs=44.1
Q ss_pred CcccCChHHHHHHHHHHHHHHc-CCcEEEEcCccchHHHhHhcCCceecChH
Q 044767 569 KYRRNGMCRLLMAELEKQLIAL-GVERLVLPSAPSVLNAWTTKFGFSKMTAS 619 (656)
Q Consensus 569 ~yRgqG~Gr~Lm~~lE~~l~~~-gv~~l~L~A~~~a~~fw~~kfGF~~~~~~ 619 (656)
.||.||+|..||++.|++|++. |-.+|-+-+.......|. ++||..-++-
T Consensus 498 KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~-klGY~LdGPY 548 (554)
T KOG2535|consen 498 KFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYR-KLGYELDGPY 548 (554)
T ss_pred hhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHH-hhCeeecChh
Confidence 4899999999999999999965 888898888888999998 8999987654
No 131
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=85.76 E-value=0.18 Score=37.38 Aligned_cols=34 Identities=29% Similarity=0.780 Sum_probs=17.5
Q ss_pred CccccccccccccccccccccccceeeccCC-cccccchhh
Q 044767 401 GLVRTCDQCEHKFHTGCTRKSKRELKVKSQN-KWFCSDRCE 440 (656)
Q Consensus 401 ~~ll~CdqC~r~yH~~Cl~~~~~~l~~~p~g-~WfC~~~C~ 440 (656)
+.|+.|+.|.-..|..|..-. ..+.+ .|+|.. |+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~-----~~~~~~~W~C~~-C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVS-----EVPDGDDWLCDR-CE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-S-----S--SS-----HH-H-
T ss_pred CceEEeCCCCCcCChhhCCcc-----cCCCCCcEECCc-CC
Confidence 358999999999999998652 23333 699986 63
No 132
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=81.62 E-value=3.8 Score=37.15 Aligned_cols=45 Identities=18% Similarity=0.072 Sum_probs=35.6
Q ss_pred eCCeEEEEEEEEEeC---ceeeEeEEEeccCcccCChHHHHHHHHHHH
Q 044767 542 KKRKIISAATVRVYE---KVAEIPFVATMFKYRRNGMCRLLMAELEKQ 586 (656)
Q Consensus 542 ~dg~iVg~a~lr~~~---~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~ 586 (656)
.++...|+|.+..-. +.+.|...||.+..||+|+++.|+++|-+.
T Consensus 15 ~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d 62 (99)
T cd04264 15 LSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRD 62 (99)
T ss_pred EeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhh
Confidence 344466677664434 778999999999999999999999988765
No 133
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=81.61 E-value=2.8 Score=37.37 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=33.0
Q ss_pred eEEEEEeeCCe-EEEEEEEEEe-C-----------------------ceeeEeEEEeccCcccCChHHHHH
Q 044767 535 FYTVVLEKKRK-IISAATVRVY-E-----------------------KVAEIPFVATMFKYRRNGMCRLLM 580 (656)
Q Consensus 535 ~y~~VLe~dg~-iVg~a~lr~~-~-----------------------~~AEI~~VAv~~~yRgqG~Gr~Lm 580 (656)
..|+++.+++. +||+.++-.. . .++||.|.+|.|+||+...-..|.
T Consensus 30 ~~h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 30 SVHLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred ccEEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 45666655555 9998887543 1 357899999999999887666553
No 134
>PTZ00064 histone acetyltransferase; Provisional
Probab=81.05 E-value=2.7 Score=47.91 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=50.6
Q ss_pred HHHhhHHHHHhhhcCCCCCCCchhhhHHHHHhhhccccccccccceEEEEE-ee---CCeEEEEEEEEEe-CceeeEeEE
Q 044767 490 RKLHGAVEVMHECFEPAKEPLTGRDLIEDVIFNRRSELKHLNYVGFYTVVL-EK---KRKIISAATVRVY-EKVAEIPFV 564 (656)
Q Consensus 490 ~kl~~al~I~~e~F~Pi~dp~s~~dl~~~~v~n~~s~~~r~~~~g~y~~VL-e~---dg~iVg~a~lr~~-~~~AEI~~V 564 (656)
....+-|-++.-.| .|. ..+.. |-..|.++|| +. +-.+||+=+=-.. .+---+..|
T Consensus 330 klYCQNLCLLAKLF---LDh---KTLYy-------------DVdpFlFYVLtE~D~~G~HiVGYFSKEK~S~~~nNLACI 390 (552)
T PTZ00064 330 RGYAENLCYLAKLF---LDH---KTLQY-------------DVEPFLFYIVTEVDEEGCHIVGYFSKEKVSLLHYNLACI 390 (552)
T ss_pred hhHHHHHHHHHHHh---ccC---ccccc-------------cccceEEEEEEEecCCCcEEEEEecccccCcccCceEEE
Confidence 45566677777778 442 11211 2223444444 33 2367775221111 122358889
Q ss_pred EeccCcccCChHHHHHHHHHHHHHHcC
Q 044767 565 ATMFKYRRNGMCRLLMAELEKQLIALG 591 (656)
Q Consensus 565 Av~~~yRgqG~Gr~Lm~~lE~~l~~~g 591 (656)
-|.|.||++|||+.||+---++.+..|
T Consensus 391 LtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 391 LTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred EecchhhhcchhhhhhhhhhhhhhhcC
Confidence 999999999999999988777777655
No 135
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=81.00 E-value=1.3 Score=50.42 Aligned_cols=34 Identities=29% Similarity=0.591 Sum_probs=26.8
Q ss_pred CCccccccccccccCCceEeecCCCCccCCCCcC
Q 044767 331 HQVETYDMCVVCLDGGELICCDHCPCMYHSSCLG 364 (656)
Q Consensus 331 ~~~~ndd~C~vC~dgGeLl~Cd~CprafH~~Cl~ 364 (656)
....+.++|++|.++|.+++|+.|+.++|..|..
T Consensus 84 ~~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~ 117 (463)
T KOG1081|consen 84 HPKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKP 117 (463)
T ss_pred ccCCCcchhccccCCCccceeccccccccccCcC
Confidence 3467778999999999999999666666666654
No 136
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=80.68 E-value=0.85 Score=36.95 Aligned_cols=36 Identities=28% Similarity=0.708 Sum_probs=28.6
Q ss_pred CCCccccCCCCCCCCccccccCCCCccccccccccccccccccccc
Q 044767 377 LCCCAICGDGKFKQRTLHSVDDDDGLVRTCDQCEHKFHTGCTRKSK 422 (656)
Q Consensus 377 ~C~C~iCg~~~~~~~~~~~v~~~~~~ll~CdqC~r~yH~~Cl~~~~ 422 (656)
.+.|.+|++.-. +++.++.|..|...||..|-...+
T Consensus 5 ~~~C~~Cg~~~~----------~~dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 5 GCKCPVCGKKFK----------DGDDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred CccChhhCCccc----------CCCCEEECCCCCCcccHHHHhhCC
Confidence 457889998642 355699999999999999987654
No 137
>PLN03239 histone acetyltransferase; Provisional
Probab=80.65 E-value=3.6 Score=45.10 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=28.1
Q ss_pred eEeEEEeccCcccCChHHHHHHHHHHHHHHcC
Q 044767 560 EIPFVATMFKYRRNGMCRLLMAELEKQLIALG 591 (656)
Q Consensus 560 EI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~g 591 (656)
-+.-|-|.|.||++|+|+.||+--=++.+..|
T Consensus 215 NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 215 NLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred ceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 48889999999999999999988888777665
No 138
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=79.98 E-value=2.3 Score=42.34 Aligned_cols=53 Identities=17% Similarity=0.092 Sum_probs=47.1
Q ss_pred eeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCC
Q 044767 558 VAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFG 612 (656)
Q Consensus 558 ~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfG 612 (656)
+||+++.||+|+.+|.||+..| ..+--.++++||.--+.--...+...++ +|+
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~-R~~ 137 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVE-RLC 137 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHH-HHh
Confidence 6899999999999999999965 7999999999999999888888888888 454
No 139
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=79.47 E-value=10 Score=35.96 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=51.0
Q ss_pred ceEEEEEeeCCeEEEEEEEEEe-CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEE
Q 044767 534 GFYTVVLEKKRKIISAATVRVY-EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVL 597 (656)
Q Consensus 534 g~y~~VLe~dg~iVg~a~lr~~-~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L 597 (656)
+.+++-...+|++||++.+-+. ..+..|-..- +|++...++|...+-.-+++|+++|.+-+.|
T Consensus 38 ~t~~~~~~~~~kLiav~v~D~l~~glSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~~~~l~y~YL 101 (128)
T PF04377_consen 38 GTYHLEYRLDGKLIAVAVVDILPDGLSAVYTFY-DPDYSKRSLGTYSILREIELARELGLPYYYL 101 (128)
T ss_pred CCEEEEEEeCCeEEEEEEeecccchhhheeeee-CCCccccCcHHHHHHHHHHHHHHcCCCEEee
Confidence 4666777899999999988777 5555444443 8999999999999888889999999998883
No 140
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=79.19 E-value=1.9 Score=37.07 Aligned_cols=40 Identities=33% Similarity=0.423 Sum_probs=31.3
Q ss_pred hhcccEEEEeccC-C---ceeeEEEeCCCCchhhhHHHHHHHhh
Q 044767 10 LALNWKLWYAQKG-G---YKQEIRYTSPNQKTFYSLRTACRSLI 49 (656)
Q Consensus 10 ~~~~w~~~~~~~~-~---~~~~~~y~~p~~~~~~~l~~~c~~~~ 49 (656)
|-.||+.+..+++ | ++...-|.||.|+.|.|...+=+-+.
T Consensus 11 Lp~GW~re~~~R~~g~~~~~~dv~Y~sP~Gk~~RS~~eV~~yL~ 54 (77)
T PF01429_consen 11 LPDGWKREVVVRKSGSSAGKKDVYYYSPCGKRFRSKKEVVRYLK 54 (77)
T ss_dssp STTT-EEEEEESSSSTTTTSEEEEEEETTSEEESSHHHHHHHHT
T ss_pred CCCCCEEEEEEecCCCcCCceEEEEECCCCCEEeCHHHHHHHHH
Confidence 4579999999776 3 47899999999999999887755443
No 141
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=76.13 E-value=3.4 Score=46.78 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=37.5
Q ss_pred ceEEEEE-ee---CCeEEEEEEEEEe-CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcC
Q 044767 534 GFYTVVL-EK---KRKIISAATVRVY-EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALG 591 (656)
Q Consensus 534 g~y~~VL-e~---dg~iVg~a~lr~~-~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~g 591 (656)
.|.++|| +. +..+||+=+=-.. .+---+..|-|.|.||++|||+.||+---++.+..|
T Consensus 277 ~FlFYvl~e~d~~g~h~vGyFSKEk~s~~~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 277 LFLFYVLCECDDRGCHMVGYFSKEKHSEEDYNLACILTLPPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred ceEEEEEEEecCCCcEEEEEecccccCcCCCceEEEEecchhhhcchhheehhheehhhhccC
Confidence 3554554 33 3378775321111 122348889999999999999999987666666554
No 142
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=75.96 E-value=1.4 Score=35.80 Aligned_cols=28 Identities=32% Similarity=0.889 Sum_probs=24.6
Q ss_pred cccccccc----CCceEeecCCCCccCCCCcC
Q 044767 337 DMCVVCLD----GGELICCDHCPCMYHSSCLG 364 (656)
Q Consensus 337 d~C~vC~d----gGeLl~Cd~CprafH~~Cl~ 364 (656)
..|.+|++ +++++.|..|...||.+|..
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 35999984 78899999999999999984
No 143
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=73.73 E-value=1.8 Score=37.60 Aligned_cols=38 Identities=26% Similarity=0.677 Sum_probs=26.5
Q ss_pred Cccccccc--cccccccccccccccceeec---cCCcccccch
Q 044767 401 GLVRTCDQ--CEHKFHTGCTRKSKRELKVK---SQNKWFCSDR 438 (656)
Q Consensus 401 ~~ll~Cdq--C~r~yH~~Cl~~~~~~l~~~---p~g~WfC~~~ 438 (656)
|..+.|.. |.+.||+.|....+..+... .....||++|
T Consensus 47 Ga~i~C~~~~C~~~fH~~CA~~~~~~~~~~~~~~~~~~~C~~H 89 (90)
T PF13771_consen 47 GACIGCSHPGCSRSFHVPCARKAGCFIEFDEDNGKFRIFCPKH 89 (90)
T ss_pred CeEEEEeCCCCCcEEChHHHccCCeEEEEccCCCceEEEChhc
Confidence 45788885 99999999998866444433 2346777653
No 144
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=72.40 E-value=24 Score=36.17 Aligned_cols=88 Identities=15% Similarity=0.158 Sum_probs=63.7
Q ss_pred ccccccccceEEEEE-eeCCeEEEEEEEEEe----------------------CceeeEeEEEecc--CcccCC----hH
Q 044767 526 ELKHLNYVGFYTVVL-EKKRKIISAATVRVY----------------------EKVAEIPFVATMF--KYRRNG----MC 576 (656)
Q Consensus 526 ~~~r~~~~g~y~~VL-e~dg~iVg~a~lr~~----------------------~~~AEI~~VAv~~--~yRgqG----~G 576 (656)
++..+|-..-+|+++ ..+|+|+|++++-.. .++.|..|.||++ .-|+.| .+
T Consensus 43 E~DqyD~~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~ 122 (209)
T COG3916 43 EIDQYDNLDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAA 122 (209)
T ss_pred cccccCCCCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHH
Confidence 334444444566666 889999999987532 1467999999987 444443 36
Q ss_pred HHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCce
Q 044767 577 RLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFS 614 (656)
Q Consensus 577 r~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~ 614 (656)
..||..+.+++...|++.|+.-...-.+.... ..||.
T Consensus 123 ~el~~g~ie~a~~~G~~~IvtVt~~~meril~-r~Gw~ 159 (209)
T COG3916 123 YELFAGMIEYALARGITGIVTVTDTGMERILR-RAGWP 159 (209)
T ss_pred HHHHHHHHHHHHHcCCceEEEEEchHHHHHHH-HcCCC
Confidence 78999999999999999999877766666655 46663
No 145
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=71.64 E-value=9 Score=34.74 Aligned_cols=39 Identities=23% Similarity=0.152 Sum_probs=31.1
Q ss_pred EEEEEEEeC--ceeeEeEEEeccCcccCChHHHHHHHHHHH
Q 044767 548 SAATVRVYE--KVAEIPFVATMFKYRRNGMCRLLMAELEKQ 586 (656)
Q Consensus 548 g~a~lr~~~--~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~ 586 (656)
|+|.+..-. +.+.|...||.+..||+|+++.|+++|-+.
T Consensus 22 ~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d 62 (99)
T cd04265 22 AAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRD 62 (99)
T ss_pred EEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhh
Confidence 344443324 688999999999999999999999988765
No 146
>PRK14852 hypothetical protein; Provisional
Probab=69.90 E-value=14 Score=45.90 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=68.6
Q ss_pred eEEEEEeeCCeEEEEEEEEEe-C----------------------ceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcC
Q 044767 535 FYTVVLEKKRKIISAATVRVY-E----------------------KVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALG 591 (656)
Q Consensus 535 ~y~~VLe~dg~iVg~a~lr~~-~----------------------~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~g 591 (656)
.+++++-..+++|++.++.+- . .++|+.++|+++..|.+-+=-.|+..+-.++...+
T Consensus 75 t~~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~ 154 (989)
T PRK14852 75 TSVFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSE 154 (989)
T ss_pred ceEEEeccCCcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcC
Confidence 344565555778787776554 2 25899999999888877777788888888888889
Q ss_pred CcEEEEcCccchHHHhHhcCCceecChH
Q 044767 592 VERLVLPSAPSVLNAWTTKFGFSKMTAS 619 (656)
Q Consensus 592 v~~l~L~A~~~a~~fw~~kfGF~~~~~~ 619 (656)
+.-+++.--+.=..||++-|||+.+++.
T Consensus 155 ~dd~~i~VnPkH~~FY~r~l~f~~ig~~ 182 (989)
T PRK14852 155 VDDILVTVNPKHVKFYTDIFLFKPFGEV 182 (989)
T ss_pred CCeEEEEECcchHHHHHHHhCCcccccc
Confidence 9999999999999999999999999853
No 147
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=68.19 E-value=32 Score=38.04 Aligned_cols=84 Identities=24% Similarity=0.383 Sum_probs=65.0
Q ss_pred cccccccceEEEEEeeCC--eEEEEE-----EEEEe---CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCc---
Q 044767 527 LKHLNYVGFYTVVLEKKR--KIISAA-----TVRVY---EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVE--- 593 (656)
Q Consensus 527 ~~r~~~~g~y~~VLe~dg--~iVg~a-----~lr~~---~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~--- 593 (656)
+...++.-.+|+.+...+ ++||.. .+++. ...+||.++.|++..|+++++=.|+.+|-+.+.-.|+=
T Consensus 126 l~~pg~~~~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~ 205 (421)
T KOG2779|consen 126 LQPPGWKKEWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAA 205 (421)
T ss_pred hcCCCCccceEEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHh
Confidence 455567778898877654 888875 35555 35799999999999999999999999998877665553
Q ss_pred ---EEEEcCccchHHHhHhc
Q 044767 594 ---RLVLPSAPSVLNAWTTK 610 (656)
Q Consensus 594 ---~l~L~A~~~a~~fw~~k 610 (656)
-++||+-...-.-|-++
T Consensus 206 yTaGvvLp~PVstcRY~HRs 225 (421)
T KOG2779|consen 206 YTAGVVLPKPVSTCRYWHRS 225 (421)
T ss_pred hhcceeeccccchhhhhhcc
Confidence 37888888777778754
No 148
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=67.58 E-value=6.7 Score=32.23 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=33.6
Q ss_pred hcccEEEEeccCC---ceeeEEEeCCCCchhhhHHHHHHHhhhhh
Q 044767 11 ALNWKLWYAQKGG---YKQEIRYTSPNQKTFYSLRTACRSLIDEQ 52 (656)
Q Consensus 11 ~~~w~~~~~~~~~---~~~~~~y~~p~~~~~~~l~~~c~~~~~~~ 52 (656)
-.||+-+....++ ++..+-|.||.|+.+.|+..+=+-+.+.+
T Consensus 7 p~GW~R~~~~r~~g~~~k~dv~Y~sP~Gk~~Rs~~ev~~yL~~~~ 51 (62)
T cd00122 7 PPGWKRELVIRKSGSAGKGDVYYYSPCGKKLRSKPEVARYLEKTG 51 (62)
T ss_pred CCCeEEEEEEcCCCCCCcceEEEECCCCceecCHHHHHHHHHhCC
Confidence 5799999877664 57889999999999999988866655543
No 149
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=64.83 E-value=8.5 Score=42.89 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=22.6
Q ss_pred EeEEEeccCcccCChHHHHHHHHHHHH
Q 044767 561 IPFVATMFKYRRNGMCRLLMAELEKQL 587 (656)
Q Consensus 561 I~~VAv~~~yRgqG~Gr~Lm~~lE~~l 587 (656)
+.-|-|.|.||++|+|+.|++-==++-
T Consensus 263 laCILtLPpyQRkGYGklLIdFSYeLS 289 (396)
T KOG2747|consen 263 LACILTLPPYQRKGYGKLLIDFSYELS 289 (396)
T ss_pred eeeeeecChhhhcccchhhhhhhhhhh
Confidence 778999999999999999997544444
No 150
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=64.41 E-value=7.3 Score=33.72 Aligned_cols=42 Identities=29% Similarity=0.347 Sum_probs=33.9
Q ss_pred hhcccEEEEeccCC---ceeeEEEeCCCCchhhhHHHHHHHhhhh
Q 044767 10 LALNWKLWYAQKGG---YKQEIRYTSPNQKTFYSLRTACRSLIDE 51 (656)
Q Consensus 10 ~~~~w~~~~~~~~~---~~~~~~y~~p~~~~~~~l~~~c~~~~~~ 51 (656)
|-.||+-+..++++ ++...-|.||.|+.+-|+..+=+-+..-
T Consensus 7 lp~GW~r~~~~R~~gs~~k~DvyY~sP~Gkk~RS~~ev~~yL~~~ 51 (77)
T cd01396 7 LPPGWKRELVPRKSGSAGKFDVYYISPTGKKFRSKVELARYLEKN 51 (77)
T ss_pred CCCCCEEEEEEecCCCCCcceEEEECCCCCEEECHHHHHHHHHhC
Confidence 45799999887774 5778899999999999998886665543
No 151
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=63.35 E-value=4.6 Score=45.50 Aligned_cols=58 Identities=19% Similarity=0.238 Sum_probs=43.2
Q ss_pred eeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEE-------cCccchH-HHhHhcCCceec
Q 044767 558 VAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVL-------PSAPSVL-NAWTTKFGFSKM 616 (656)
Q Consensus 558 ~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L-------~A~~~a~-~fw~~kfGF~~~ 616 (656)
.|.|.+|.|+|+||+-|+|+.-|.++.++..+.-+..+.- -||.--. +|.+ +-||+-+
T Consensus 241 aariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe-~~gfkyl 306 (593)
T COG2401 241 AARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFE-KVGFKYL 306 (593)
T ss_pred hhheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhh-hhceeee
Confidence 3678999999999999999999999999999887766552 2332222 3444 6788654
No 152
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=62.32 E-value=4.7 Score=44.02 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=43.6
Q ss_pred HHHhhHHHHHhhhcCCCCCCCchhhhHHHHHhhhccccccccccceEEEEEeeCC----eEEEEEEEEEe-CceeeEeEE
Q 044767 490 RKLHGAVEVMHECFEPAKEPLTGRDLIEDVIFNRRSELKHLNYVGFYTVVLEKKR----KIISAATVRVY-EKVAEIPFV 564 (656)
Q Consensus 490 ~kl~~al~I~~e~F~Pi~dp~s~~dl~~~~v~n~~s~~~r~~~~g~y~~VLe~dg----~iVg~a~lr~~-~~~AEI~~V 564 (656)
..+.+.|-++.-+| .|.- .--+|-.+|.+.|+.+.| ++||+-+=--. .+-.-+..|
T Consensus 208 ~~~CrnLCLlsKlF---Ld~K----------------tLYyDVDpflFYvl~~~~~~~~h~vGyFSKEK~S~~~yNLaCI 268 (395)
T COG5027 208 RLYCRNLCLLSKLF---LDHK----------------TLYYDVDPFLFYVLTERGDTGCHLVGYFSKEKESEQDYNLACI 268 (395)
T ss_pred hhHHHHHHHHHHHH---hcCc----------------eeEEeccceEEEEEEEcCCcceeeeeeechhhcccccCceEEE
Confidence 45666677777778 3321 112344455555554433 35554221111 222458889
Q ss_pred EeccCcccCChHHHHHHH
Q 044767 565 ATMFKYRRNGMCRLLMAE 582 (656)
Q Consensus 565 Av~~~yRgqG~Gr~Lm~~ 582 (656)
-|.|.||++|+|..||+-
T Consensus 269 LtLP~yQRrGYG~lLIdF 286 (395)
T COG5027 269 LTLPPYQRRGYGKLLIDF 286 (395)
T ss_pred EecChhHhcccceEeeee
Confidence 999999999999999853
No 153
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=62.21 E-value=4.6 Score=40.94 Aligned_cols=33 Identities=27% Similarity=0.572 Sum_probs=25.6
Q ss_pred CCCCccccccccccccccccccccccceeeccCCcccccchhhhhH
Q 044767 398 DDDGLVRTCDQCEHKFHTGCTRKSKRELKVKSQNKWFCSDRCEHVF 443 (656)
Q Consensus 398 ~~~~~ll~CdqC~r~yH~~Cl~~~~~~l~~~p~g~WfC~~~C~~i~ 443 (656)
++.+....|..|..-||..|... --||+ |..+-
T Consensus 167 F~~~~~~~C~~C~~v~H~~C~~~------------~~Cpk-C~R~~ 199 (202)
T PF13901_consen 167 FQIDTTVRCPKCKSVFHKSCFRK------------KSCPK-CARRQ 199 (202)
T ss_pred CCCCCeeeCCcCccccchhhcCC------------CCCCC-cHhHh
Confidence 35567899999999999999874 12886 87753
No 154
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=61.66 E-value=3.4 Score=44.17 Aligned_cols=31 Identities=29% Similarity=0.569 Sum_probs=24.7
Q ss_pred ceeeCCCCceeeccccccccCCCC-CCCCCce
Q 044767 266 GIKCNCCNEVFTLTGFEVHAGSKN-HRPAANI 296 (656)
Q Consensus 266 GI~C~CC~~~~tpseFE~hAG~~~-~rP~~nI 296 (656)
.|.|.|=+..|||.||..|||+.. ..|-.+|
T Consensus 252 ~i~c~chg~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 252 RIVCVCHGSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred EEEEEecCCCCCHHHHHHhcCCCCcCCchhcc
Confidence 388888899999999999999753 3455555
No 155
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=59.73 E-value=3.6 Score=34.78 Aligned_cols=28 Identities=32% Similarity=0.783 Sum_probs=11.6
Q ss_pred cccccccc----CCc--eEeec--CCCCccCCCCcC
Q 044767 337 DMCVVCLD----GGE--LICCD--HCPCMYHSSCLG 364 (656)
Q Consensus 337 d~C~vC~d----gGe--Ll~Cd--~CprafH~~Cl~ 364 (656)
..|.||.. .++ .+.|+ .|...||..||-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~ 38 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLS 38 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHH
Confidence 45889974 333 48898 799999999996
No 156
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=56.53 E-value=5.4 Score=49.25 Aligned_cols=43 Identities=21% Similarity=0.436 Sum_probs=37.6
Q ss_pred ccccCCCCccccccccccccccccccccccceeeccCCcccccchhh
Q 044767 394 HSVDDDDGLVRTCDQCEHKFHTGCTRKSKRELKVKSQNKWFCSDRCE 440 (656)
Q Consensus 394 ~~v~~~~~~ll~CdqC~r~yH~~Cl~~~~~~l~~~p~g~WfC~~~C~ 440 (656)
|.+|.+.+.+++|..|++-||..|..+ ++.+.|...|-|.- |.
T Consensus 347 crf~~d~~~~lc~Et~prvvhlEcv~h---P~~~~~s~~~e~ev-c~ 389 (1414)
T KOG1473|consen 347 CRFCHDLGDLLCCETCPRVVHLECVFH---PRFAVPSAFWECEV-CN 389 (1414)
T ss_pred ccccCcccceeecccCCceEEeeecCC---ccccCCCccchhhh-hh
Confidence 355667788999999999999999998 78889999999985 76
No 157
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=56.45 E-value=5.6 Score=39.42 Aligned_cols=24 Identities=21% Similarity=0.668 Sum_probs=21.6
Q ss_pred CCCccccccccccccccccccccc
Q 044767 399 DDGLVRTCDQCEHKFHTGCTRKSK 422 (656)
Q Consensus 399 ~~~~ll~CdqC~r~yH~~Cl~~~~ 422 (656)
..|.|+.|.-|..+||..||.+..
T Consensus 13 ~kG~Lv~CQGCs~sYHk~CLG~Rs 36 (175)
T PF15446_consen 13 NKGPLVYCQGCSSSYHKACLGPRS 36 (175)
T ss_pred cCCCeEEcCccChHHHhhhcCCcc
Confidence 567899999999999999999865
No 158
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=54.86 E-value=47 Score=36.20 Aligned_cols=122 Identities=19% Similarity=0.265 Sum_probs=79.2
Q ss_pred HHhhHHHHHhhhcCCCCCCCchhhhHHHHHhhhccccccccccceEEEEEeeCC--eEEEEEEEEEe--------Cceee
Q 044767 491 KLHGAVEVMHECFEPAKEPLTGRDLIEDVIFNRRSELKHLNYVGFYTVVLEKKR--KIISAATVRVY--------EKVAE 560 (656)
Q Consensus 491 kl~~al~I~~e~F~Pi~dp~s~~dl~~~~v~n~~s~~~r~~~~g~y~~VLe~dg--~iVg~a~lr~~--------~~~AE 560 (656)
.|+.+..++.|-|. -|..+|--|.....+-++ -+...++.--+|+++..-+ ++||......+ ...+|
T Consensus 91 ql~dv~~lL~eNYV--ED~~ag~rf~Y~~EFl~W-al~~pg~kK~whigvRvk~t~klVaFIsa~p~~v~vRgK~~~~~e 167 (451)
T COG5092 91 QLEDVFVLLEENYV--EDIYAGHRFRYSVEFLQW-ALDGPGGKKRWHIGVRVKGTQKLVAFISAKPHLVSVRGKRSSVLE 167 (451)
T ss_pred hhHHHHHHHHhhhh--hhhhhhhHHHHHHHHHHH-hhcCCCCceeeEEEEEEcccceeEEEEecceeEEEEcccccccce
Confidence 35555566666663 232233333333333233 2455667778999988766 77776543222 24789
Q ss_pred EeEEEeccCcccCChHHHHHHHHHHHHHHcCCcE------EEEcCccc----------hHHHhHhcCCceecC
Q 044767 561 IPFVATMFKYRRNGMCRLLMAELEKQLIALGVER------LVLPSAPS----------VLNAWTTKFGFSKMT 617 (656)
Q Consensus 561 I~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~------l~L~A~~~----------a~~fw~~kfGF~~~~ 617 (656)
|.++.++++.|++-+.-.|+.+|-+.+.-.|+-+ +.||+... ...+|. .||...+
T Consensus 168 vNFLCihk~lRsKRltPvLIkEiTRR~n~~~iw~avyTaG~~LpspVS~~RY~HRpLNwkkLy~--~gFs~~p 238 (451)
T COG5092 168 VNFLCIHKELRSKRLTPVLIKEITRRANVDGIWRAVYTAGTELPSPVSQGRYYHRPLNWKKLYM--CGFSGLP 238 (451)
T ss_pred EEEEEEehhhhhCccchHHHHHHHHhhhhhhhHHHhhhccceecCccccchhccCCcCHHHHhh--cCCcCCC
Confidence 9999999999999999999999998887666654 55666543 344444 7888654
No 159
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=54.04 E-value=13 Score=32.12 Aligned_cols=41 Identities=29% Similarity=0.365 Sum_probs=31.5
Q ss_pred hhcccEEEEeccC-C---ceeeEEEeCCCCchhhhHHHHHHHhhh
Q 044767 10 LALNWKLWYAQKG-G---YKQEIRYTSPNQKTFYSLRTACRSLID 50 (656)
Q Consensus 10 ~~~~w~~~~~~~~-~---~~~~~~y~~p~~~~~~~l~~~c~~~~~ 50 (656)
+-.||+-+..+++ | ++..+-|.||.||.+-|...+=+-+.+
T Consensus 8 lp~GW~R~~~~r~~g~~~~~~dV~Y~sP~GkklRs~~ev~~YL~~ 52 (77)
T smart00391 8 LPCGWRRETKQRKSGRSAGKFDVYYISPCGKKLRSKSELARYLHK 52 (77)
T ss_pred CCCCcEEEEEEecCCCCCCcccEEEECCCCCeeeCHHHHHHHHHh
Confidence 4579998887665 3 488999999999999888877554443
No 160
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=53.76 E-value=5.8 Score=46.29 Aligned_cols=55 Identities=27% Similarity=0.679 Sum_probs=37.1
Q ss_pred cCCCCC-----ccccCCCCCCCCccccccCCCCccccccccccccccccccccccceeeccCCcccccchhhhhHHh
Q 044767 374 FCPLCC-----CAICGDGKFKQRTLHSVDDDDGLVRTCDQCEHKFHTGCTRKSKRELKVKSQNKWFCSDRCEHVFSS 445 (656)
Q Consensus 374 ~C~~C~-----C~iCg~~~~~~~~~~~v~~~~~~ll~CdqC~r~yH~~Cl~~~~~~l~~~p~g~WfC~~~C~~i~~~ 445 (656)
.|..|. |.+|...+. .-++...+...|+.|...||..|+.-... . ||+ |..+-.+
T Consensus 503 ~C~lC~~~gfiCe~Cq~~~i------iyPF~~~~~~rC~~C~avfH~~C~~r~s~-------~---CPr-C~R~q~r 562 (580)
T KOG1829|consen 503 ECDLCTGKGFICELCQHNDI------IYPFETRNTRRCSTCLAVFHKKCLRRKSP-------C---CPR-CERRQKR 562 (580)
T ss_pred hchhhccCeeeeeeccCCCc------ccccccccceeHHHHHHHHHHHHHhccCC-------C---CCc-hHHHHHH
Confidence 477776 788833321 11344667889999999999999986321 1 886 9886543
No 161
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=53.06 E-value=12 Score=44.46 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=26.2
Q ss_pred eeEeEEEeccCcccCChHHHHHHHHHHHHH
Q 044767 559 AEIPFVATMFKYRRNGMCRLLMAELEKQLI 588 (656)
Q Consensus 559 AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~ 588 (656)
|.|-||||+|+|++.|||.+-|+-+.++..
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~y~e 644 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTDYFE 644 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHHHHh
Confidence 568899999999999999998888877654
No 162
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=52.04 E-value=88 Score=32.84 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=47.5
Q ss_pred EEEEEeeCCeEEEEEEEEEe-CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEE
Q 044767 536 YTVVLEKKRKIISAATVRVY-EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVL 597 (656)
Q Consensus 536 y~~VLe~dg~iVg~a~lr~~-~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L 597 (656)
+++-...+|++||+|.+-+. ..+..|-. -=+|+|-..++|...+-.-+++|+++|.+.+.|
T Consensus 145 ~~~ey~~~g~LiaVav~D~l~d~lSAVY~-FyDPd~~~~SLG~~~iL~qI~~ak~~gl~y~YL 206 (240)
T PRK01305 145 RFIEFRGDGKLVAVAVTDVLDDGLSAVYT-FYDPDEEHRSLGTFAILWQIELAKRLGLPYVYL 206 (240)
T ss_pred EEEEEEeCCeEEEEEEEeccCCceeeEEE-eeCCCccccCCHHHHHHHHHHHHHHcCCCeEee
Confidence 34445679999999988776 55555533 348999888999988888889999999988874
No 163
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=51.94 E-value=7 Score=35.27 Aligned_cols=29 Identities=34% Similarity=0.891 Sum_probs=25.3
Q ss_pred ccccccccc-CCceEeecC--CCCccCCCCcC
Q 044767 336 YDMCVVCLD-GGELICCDH--CPCMYHSSCLG 364 (656)
Q Consensus 336 dd~C~vC~d-gGeLl~Cd~--CprafH~~Cl~ 364 (656)
...|.+|+. .|-.+-|.. |..+||..|.-
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCCCceeEEcCCCCCCcCCCHHHHH
Confidence 457999997 688999998 99999999974
No 164
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=51.85 E-value=76 Score=33.52 Aligned_cols=66 Identities=29% Similarity=0.262 Sum_probs=42.9
Q ss_pred ceEEEEEee-CCeEEEEEEEEEe--CceeeEeEEEeccC-cccCChHHHHHHHHHHHHHHcCCcEEEEcCcc
Q 044767 534 GFYTVVLEK-KRKIISAATVRVY--EKVAEIPFVATMFK-YRRNGMCRLLMAELEKQLIALGVERLVLPSAP 601 (656)
Q Consensus 534 g~y~~VLe~-dg~iVg~a~lr~~--~~~AEI~~VAv~~~-yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~ 601 (656)
++..+|+.. +|+|+|++.+-.. .+..-+-..=-+++ + +|+-..|+..+.+.+++.|++.|-|...+
T Consensus 179 ~~~~~~~~~~dgki~af~~~~~~~~~~~~~~~~~k~~~~a~--~G~~e~l~~~~~~~~~~~g~~~lnLg~ap 248 (299)
T PF09924_consen 179 GLRGFVARVADGKIVAFAIGSPLGGRDGWSIDFEKADPDAP--KGIYEFLNVEFAEHLKAEGVEYLNLGFAP 248 (299)
T ss_dssp T-EEEEEEE-TTEEEEEEEEEEEE-TTEEEEEEEEE-TT-S--TTHHHHHHHHHHHHS--TT--EEE-----
T ss_pred CceEEEEEECCCcEEEEEEEEEccCCccEEEEEEecCCCCC--CcHHHHHHHHHHHhhhhCCceEEEccccc
Confidence 455667788 9999999988765 35555555544555 5 59999999999999999999999865553
No 165
>PRK00756 acyltransferase NodA; Provisional
Probab=51.73 E-value=20 Score=35.60 Aligned_cols=46 Identities=17% Similarity=0.123 Sum_probs=38.0
Q ss_pred eeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchH
Q 044767 558 VAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVL 604 (656)
Q Consensus 558 ~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~ 604 (656)
+||+++.||+|+..|.||+..+ ..|--.++++||.--+---...+.
T Consensus 85 VaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FGtVR~al~ 130 (196)
T PRK00756 85 VAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFGTVRHALR 130 (196)
T ss_pred EEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecccchHHHH
Confidence 6899999999999999999866 799999999999877654444333
No 166
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=51.03 E-value=25 Score=38.72 Aligned_cols=80 Identities=18% Similarity=0.175 Sum_probs=48.2
Q ss_pred eEEEEEee--CCeEEEEEEEEEe-------------------------------------CceeeEeEEEeccCcccCCh
Q 044767 535 FYTVVLEK--KRKIISAATVRVY-------------------------------------EKVAEIPFVATMFKYRRNGM 575 (656)
Q Consensus 535 ~y~~VLe~--dg~iVg~a~lr~~-------------------------------------~~~AEI~~VAv~~~yRgqG~ 575 (656)
.|.+|||+ .|+|||++.|..- .+-.||.-+-++|+||+-|.
T Consensus 59 ~YlfVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~ 138 (342)
T PF04958_consen 59 GYLFVLEDTETGEVVGTSAIEAAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGN 138 (342)
T ss_dssp EEEEEEEETTT--EEEEEEEESSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHH
T ss_pred ceEEEEEecCCCcEEEEEeEEeccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCch
Confidence 68999995 5999999976421 12368888899999999999
Q ss_pred HHHHHHHHHHHHHHc---CCcEEEEcCc-----cchHHHhHhcCCcee
Q 044767 576 CRLLMAELEKQLIAL---GVERLVLPSA-----PSVLNAWTTKFGFSK 615 (656)
Q Consensus 576 Gr~Lm~~lE~~l~~~---gv~~l~L~A~-----~~a~~fw~~kfGF~~ 615 (656)
|+.|-..=.-++.+. =.++++-+-. .---+||. .+|-+-
T Consensus 139 G~lLSr~RfLFiA~~~~rF~~~viAElrG~~De~G~SPFWd-alG~~F 185 (342)
T PF04958_consen 139 GRLLSRSRFLFIAQHRERFADRVIAELRGVSDEDGRSPFWD-ALGRHF 185 (342)
T ss_dssp HHHHHHHHHHHHHH-GGGS-SEEEEE--B---TT---HHHH-HTGGGT
T ss_pred HHHHHHHHHHHHHhChhhcchheeeeccCCcCCCCCCchHH-Hhhccc
Confidence 999876544444332 2234443222 23458999 566443
No 167
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=50.51 E-value=3.8 Score=41.74 Aligned_cols=66 Identities=23% Similarity=0.488 Sum_probs=37.6
Q ss_pred CceEeecCCCCcc--------CCCCcCCCCCCCCCCcCCCCCccccCCCCCCCCcc--ccccCCCCcccccccccccccc
Q 044767 346 GELICCDHCPCMY--------HSSCLGLKDIPYGDWFCPLCCCAICGDGKFKQRTL--HSVDDDDGLVRTCDQCEHKFHT 415 (656)
Q Consensus 346 GeLl~Cd~Cpraf--------H~~Cl~l~~~p~g~W~C~~C~C~iCg~~~~~~~~~--~~v~~~~~~ll~CdqC~r~yH~ 415 (656)
++...|+.|.++| |..|+... ....|.+||+.-.+.-+. +-.-..+-.-..|..|+++|-.
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~v---------kr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftq 185 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDV---------KRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQ 185 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhhhccHH---------HHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHh
Confidence 5566777777777 66676421 123477787753222111 0011122335779999999988
Q ss_pred ccccc
Q 044767 416 GCTRK 420 (656)
Q Consensus 416 ~Cl~~ 420 (656)
.|--+
T Consensus 186 rcsle 190 (267)
T KOG3576|consen 186 RCSLE 190 (267)
T ss_pred hccHH
Confidence 88543
No 168
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=50.20 E-value=34 Score=37.58 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=38.2
Q ss_pred eEEEEEee--CCeEEEEEEEEEe-------------------------------------CceeeEeEEEeccCcccCCh
Q 044767 535 FYTVVLEK--KRKIISAATVRVY-------------------------------------EKVAEIPFVATMFKYRRNGM 575 (656)
Q Consensus 535 ~y~~VLe~--dg~iVg~a~lr~~-------------------------------------~~~AEI~~VAv~~~yRgqG~ 575 (656)
.|.||||+ .|+|||++.|..- .+..||.-+-++|+||+-|.
T Consensus 55 ~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~ 134 (336)
T TIGR03244 55 GYLFVLEDTETGTVAGVSAIEAAVGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGN 134 (336)
T ss_pred cEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcc
Confidence 68899986 6899999987532 12368888899999999999
Q ss_pred HHHHHHH
Q 044767 576 CRLLMAE 582 (656)
Q Consensus 576 Gr~Lm~~ 582 (656)
|+.|-.+
T Consensus 135 G~LLSr~ 141 (336)
T TIGR03244 135 GRLLSKS 141 (336)
T ss_pred hhhHHHH
Confidence 9988654
No 169
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=47.23 E-value=38 Score=37.27 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=38.2
Q ss_pred eEEEEEee--CCeEEEEEEEEEe-------------------------------------CceeeEeEEEeccCcccCCh
Q 044767 535 FYTVVLEK--KRKIISAATVRVY-------------------------------------EKVAEIPFVATMFKYRRNGM 575 (656)
Q Consensus 535 ~y~~VLe~--dg~iVg~a~lr~~-------------------------------------~~~AEI~~VAv~~~yRgqG~ 575 (656)
.|.+|||+ .|+|||++.|..- .+..||.-+-++|+||+-|.
T Consensus 56 ~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~ 135 (336)
T TIGR03245 56 RYLFVLEDTETGKLLGTSSIVASAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEA 135 (336)
T ss_pred cEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCc
Confidence 68899995 6899999987532 12368888899999999999
Q ss_pred HHHHHHH
Q 044767 576 CRLLMAE 582 (656)
Q Consensus 576 Gr~Lm~~ 582 (656)
|+.|-.+
T Consensus 136 G~lLSr~ 142 (336)
T TIGR03245 136 AELLSRA 142 (336)
T ss_pred hhHHHHH
Confidence 9988654
No 170
>PRK10456 arginine succinyltransferase; Provisional
Probab=46.63 E-value=37 Score=37.40 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=38.1
Q ss_pred eEEEEEee--CCeEEEEEEEEEe-------------------------------------CceeeEeEEEeccCcccCCh
Q 044767 535 FYTVVLEK--KRKIISAATVRVY-------------------------------------EKVAEIPFVATMFKYRRNGM 575 (656)
Q Consensus 535 ~y~~VLe~--dg~iVg~a~lr~~-------------------------------------~~~AEI~~VAv~~~yRgqG~ 575 (656)
.|.||||+ .|+|||++.|..- .+..||.-+-++|+||+-|.
T Consensus 57 ~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~ 136 (344)
T PRK10456 57 GYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGN 136 (344)
T ss_pred cEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCc
Confidence 68899995 6899999987532 12368888899999999999
Q ss_pred HHHHHHH
Q 044767 576 CRLLMAE 582 (656)
Q Consensus 576 Gr~Lm~~ 582 (656)
|+.|-.+
T Consensus 137 G~LLSr~ 143 (344)
T PRK10456 137 GYLLSKS 143 (344)
T ss_pred hhHHHHH
Confidence 9988654
No 171
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=46.32 E-value=40 Score=37.02 Aligned_cols=82 Identities=17% Similarity=0.168 Sum_probs=52.0
Q ss_pred eEEEEEee--CCeEEEEEEEEEe-------------------------------------CceeeEeEEEeccCcccCCh
Q 044767 535 FYTVVLEK--KRKIISAATVRVY-------------------------------------EKVAEIPFVATMFKYRRNGM 575 (656)
Q Consensus 535 ~y~~VLe~--dg~iVg~a~lr~~-------------------------------------~~~AEI~~VAv~~~yRgqG~ 575 (656)
.|.||||+ .|+|||++.|..- .+..||.-+-++|+||+-|.
T Consensus 55 ~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~ 134 (335)
T TIGR03243 55 GYLFVLEDTETGTVAGVSAIEAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGN 134 (335)
T ss_pred cEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCc
Confidence 68899995 6899999987532 12368888899999999999
Q ss_pred HHHHHHHHHHHHHH---cCCcEEEEcCc-----cchHHHhHhcCCceecC
Q 044767 576 CRLLMAELEKQLIA---LGVERLVLPSA-----PSVLNAWTTKFGFSKMT 617 (656)
Q Consensus 576 Gr~Lm~~lE~~l~~---~gv~~l~L~A~-----~~a~~fw~~kfGF~~~~ 617 (656)
|+.|-.+=.-++.+ +=.++++-+-. .---+||. .+|-+-.+
T Consensus 135 G~LLSr~RfLFiA~~~erF~~~viAEmrG~~De~G~SPFWd-~lg~hFF~ 183 (335)
T TIGR03243 135 GRLLSRSRFLFIAAFRERFGDKIIAEMRGVSDEQGRSPFWE-ALGRHFFS 183 (335)
T ss_pred hhhHHHHHHHHHHhhHhhhhhhheeeccCccCCCCCCccHH-HhhccccC
Confidence 99886543333222 11122332211 23347999 57754433
No 172
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=46.15 E-value=9.1 Score=35.04 Aligned_cols=33 Identities=24% Similarity=0.784 Sum_probs=22.6
Q ss_pred CCccCCCCcC------C-CCCCCCCCcCCCCC----ccccCCCC
Q 044767 355 PCMYHSSCLG------L-KDIPYGDWFCPLCC----CAICGDGK 387 (656)
Q Consensus 355 prafH~~Cl~------l-~~~p~g~W~C~~C~----C~iCg~~~ 387 (656)
...|=..||- + +...++.|.||.|+ |..|.+..
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk~ 80 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRKR 80 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhccC
Confidence 6666666664 1 23457789999887 88887653
No 173
>COG5653 Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]
Probab=46.04 E-value=1.1e+02 Score=34.35 Aligned_cols=93 Identities=15% Similarity=0.113 Sum_probs=72.4
Q ss_pred hcCCCCCCCchhhhHHHHHhhhccccccccccceEEEEEeeCCeEEEEEEEEEeCceeeEeEEEeccCcccCChHHHHHH
Q 044767 502 CFEPAKEPLTGRDLIEDVIFNRRSELKHLNYVGFYTVVLEKKRKIISAATVRVYEKVAEIPFVATMFKYRRNGMCRLLMA 581 (656)
Q Consensus 502 ~F~Pi~dp~s~~dl~~~~v~n~~s~~~r~~~~g~y~~VLe~dg~iVg~a~lr~~~~~AEI~~VAv~~~yRgqG~Gr~Lm~ 581 (656)
.|+-....|+ .+|+.+++.-.-+ |+ +...+.|+.+|.+|++...-...+..+--+.+++|+|=.---|..||-
T Consensus 246 ~~Dlf~~~~t-~~fl~dL~~~~~~-----d~-~~rl~gL~~G~~lvAV~~~lr~~~t~h~~l~a~dpe~~~~SPG~~lf~ 318 (406)
T COG5653 246 QFDLFRAGWT-RDFLRDLFTQRAE-----DG-SGRLFGLHAGGRLVAVHGLLRQGGTYHAWLGAIDPEFARASPGMLLFL 318 (406)
T ss_pred CccccccchH-HHHHHHHHhccCc-----CC-ceEEEEEeeCCEEEEEEeeeccCCEEEEEeeccCHHHhhcCchHHHHH
Confidence 3444477776 5666777544322 22 466778999999999887665577888888999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEcCcc
Q 044767 582 ELEKQLIALGVERLVLPSAP 601 (656)
Q Consensus 582 ~lE~~l~~~gv~~l~L~A~~ 601 (656)
-+++++...|+.++=+.-..
T Consensus 319 d~i~~~~~~g~~~~DfgvG~ 338 (406)
T COG5653 319 DLIEWACGQGLARFDFGVGD 338 (406)
T ss_pred HHHHHHhcCCCeEEeecCCC
Confidence 99999999999998887663
No 174
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.66 E-value=16 Score=40.13 Aligned_cols=42 Identities=29% Similarity=0.797 Sum_probs=27.9
Q ss_pred cccccccc---CCceEeecCCCCccCCCCcCC--CCCCCCCCcCCCCCcc
Q 044767 337 DMCVVCLD---GGELICCDHCPCMYHSSCLGL--KDIPYGDWFCPLCCCA 381 (656)
Q Consensus 337 d~C~vC~d---gGeLl~Cd~CprafH~~Cl~l--~~~p~g~W~C~~C~C~ 381 (656)
+.|.||-+ .|+.+-==-|.-.||..|+.. ... .=+||-|++.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCc
Confidence 78999996 366443355778999999962 211 1257777763
No 175
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=44.78 E-value=5.3 Score=47.60 Aligned_cols=110 Identities=21% Similarity=0.263 Sum_probs=79.2
Q ss_pred cccccccceEEEEE-eeCCe-EEEEEEEEEe--CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcC-CcEEEEcCcc
Q 044767 527 LKHLNYVGFYTVVL-EKKRK-IISAATVRVY--EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALG-VERLVLPSAP 601 (656)
Q Consensus 527 ~~r~~~~g~y~~VL-e~dg~-iVg~a~lr~~--~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~g-v~~l~L~A~~ 601 (656)
..|+.|.+.++... -.+++ +||...+|.+ .+.++|.+-||.-+.|-.|+|.-||+.+-++.+... +..+..-|..
T Consensus 410 i~rlv~d~~h~~~~~~~d~~g~vggi~~r~f~~k~f~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~~i~~~ltyad~ 489 (720)
T KOG1472|consen 410 ISRLVFDTSHHVMARIKDNEGVVGGICFRPFPEKGFTEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSSTIDYALTYADE 489 (720)
T ss_pred HHhhccccccccceeeccccccccccccCcCcccCCcceeeccccCcccccccCcCchhhHHHHhhccchHHHHHHhhhh
Confidence 45677777666543 34444 9999999999 689999999999999999999999999999988876 6666666666
Q ss_pred chHHHhHhcCCceecChHHHhccccceeEeeCCcee
Q 044767 602 SVLNAWTTKFGFSKMTASERLNYLNYTFLDFQGTIM 637 (656)
Q Consensus 602 ~a~~fw~~kfGF~~~~~~~~~~~~~~~~m~F~gt~m 637 (656)
.|..-. .+-||+.--+.++....-+..-.=+||.|
T Consensus 490 ~aigyf-kkqgfs~ei~~~~~~~~g~ikdye~~tl~ 524 (720)
T KOG1472|consen 490 GAIGYF-KKQGFSKEIKFEKSPYVGYIKDYEGGTLM 524 (720)
T ss_pred cccccc-cCccchhhcccccCcCccccccccCcccc
Confidence 776544 47888775555554444443333334443
No 176
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=44.67 E-value=42 Score=35.01 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCceecC
Q 044767 574 GMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFSKMT 617 (656)
Q Consensus 574 G~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~~~~ 617 (656)
|-...|+..++++|++.|+.+|+.-+..+..++|. +.||...+
T Consensus 21 ~~~~~~~~~~~~~a~~~~~~ki~~~~~~~~~~~~~-~~g~~~e~ 63 (266)
T TIGR03827 21 NDVEALIPDLDALAKKEGYTKIIAKVPGSDKPLFE-ERGYLEEA 63 (266)
T ss_pred ccHHHHHHHHHHHHHHcCCcEEEEEccHHHHHHHH-HCCCeEEE
Confidence 44788999999999999999999999999999999 69998864
No 177
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=43.95 E-value=13 Score=32.21 Aligned_cols=28 Identities=32% Similarity=0.835 Sum_probs=24.8
Q ss_pred ccccccccC-CceEeecC--CCCccCCCCcC
Q 044767 337 DMCVVCLDG-GELICCDH--CPCMYHSSCLG 364 (656)
Q Consensus 337 d~C~vC~dg-GeLl~Cd~--CprafH~~Cl~ 364 (656)
..|.+|+.. |-.+-|.. |.+.||..|.-
T Consensus 37 ~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 37 LKCSICKKKGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred CCCcCCCCCCCeEEEEeCCCCCcEEChHHHc
Confidence 469999988 99999985 99999999975
No 178
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=42.65 E-value=51 Score=36.63 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=42.3
Q ss_pred eEEEEEEEEEe-Cc----eeeEeEEEeccCcccCChHHHHHHHHH-HHHHHcCCcEEEEcCccch
Q 044767 545 KIISAATVRVY-EK----VAEIPFVATMFKYRRNGMCRLLMAELE-KQLIALGVERLVLPSAPSV 603 (656)
Q Consensus 545 ~iVg~a~lr~~-~~----~AEI~~VAv~~~yRgqG~Gr~Lm~~lE-~~l~~~gv~~l~L~A~~~a 603 (656)
.++|+.++.-+ .- -+.|--+-+.|+||++|+|..||++|. .++.+-.|--++++...++
T Consensus 199 ~~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~p~v~DiTVEdPse~ 263 (403)
T KOG2696|consen 199 AYVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIARDYLEEPTVLDITVEDPSEA 263 (403)
T ss_pred eeeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHHHhhccCCceeEEEecCchHH
Confidence 36666666554 21 145666899999999999999999999 4555667777887755443
No 179
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=42.25 E-value=41 Score=33.72 Aligned_cols=55 Identities=25% Similarity=0.455 Sum_probs=48.2
Q ss_pred eeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCceecC
Q 044767 558 VAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFSKMT 617 (656)
Q Consensus 558 ~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~~~~ 617 (656)
++||+++|.. +.|.++.|+..|-..+...|++-++.-|......... ++|+....
T Consensus 87 IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~~lr~~~~-rlgl~~~~ 141 (179)
T PF12261_consen 87 IVEVGNLASF----SPGAARLLFAALAQLLAQQGFEWVVFTATRQLRNLFR-RLGLPPTV 141 (179)
T ss_pred eeEeechhhc----CcccHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHH-HcCCCcee
Confidence 5788888765 4789999999999999999999999999999999998 79986643
No 180
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=41.24 E-value=11 Score=26.36 Aligned_cols=10 Identities=60% Similarity=1.580 Sum_probs=8.4
Q ss_pred CCCCcCCCCC
Q 044767 370 YGDWFCPLCC 379 (656)
Q Consensus 370 ~g~W~C~~C~ 379 (656)
.|+|.|+.|.
T Consensus 2 ~g~W~C~~C~ 11 (30)
T PF00641_consen 2 EGDWKCPSCT 11 (30)
T ss_dssp SSSEEETTTT
T ss_pred CcCccCCCCc
Confidence 5789998886
No 181
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=41.16 E-value=4.4 Score=30.57 Aligned_cols=38 Identities=39% Similarity=0.941 Sum_probs=23.4
Q ss_pred ccccccccC---Cc-eEeecCCCCccCCCCcC--CCCCCCCCCcCCCCC
Q 044767 337 DMCVVCLDG---GE-LICCDHCPCMYHSSCLG--LKDIPYGDWFCPLCC 379 (656)
Q Consensus 337 d~C~vC~dg---Ge-Ll~Cd~CprafH~~Cl~--l~~~p~g~W~C~~C~ 379 (656)
|.|.||.+. ++ .+... |.-.||..|+. +... -.||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 468899852 33 44444 99999999986 2221 2677663
No 182
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=41.16 E-value=15 Score=40.32 Aligned_cols=61 Identities=21% Similarity=0.425 Sum_probs=42.0
Q ss_pred cccccccccccccccc--ccccccceeeccCCcccccchhhhhHHhhhhhcCCCccccCCcceeeee
Q 044767 402 LVRTCDQCEHKFHTGC--TRKSKRELKVKSQNKWFCSDRCEHVFSSLHELIGKPFSISENNLNWRLL 466 (656)
Q Consensus 402 ~ll~CdqC~r~yH~~C--l~~~~~~l~~~p~g~WfC~~~C~~i~~~Lq~llg~~~~~~~d~~sW~ll 466 (656)
.+..|+.|..+||..| .+.. .....+...|+|. .|.....+++..-+..... ...+.|.+.
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~--~~e~p~~~~~~c~-~c~~~~~~~~~~~~l~~~~-~~~~~~~~s 136 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTA--EKEAPKEDPKVCD-ECKEAQDGMSESDGLSCVC-RQDDSELLS 136 (345)
T ss_pred hhhccccccccccccccccCch--hhcCCcccccccc-ccchhhhhhhhhccceeec-ccccccccc
Confidence 5788999999999999 6552 2455567899995 6999988887654433222 344555443
No 183
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=39.23 E-value=19 Score=24.12 Aligned_cols=9 Identities=67% Similarity=1.867 Sum_probs=7.2
Q ss_pred CCCcCCCCC
Q 044767 371 GDWFCPLCC 379 (656)
Q Consensus 371 g~W~C~~C~ 379 (656)
|+|.|+.|.
T Consensus 1 g~W~C~~C~ 9 (26)
T smart00547 1 GDWECPACT 9 (26)
T ss_pred CcccCCCCC
Confidence 579998885
No 184
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=39.19 E-value=1.9e+02 Score=30.35 Aligned_cols=59 Identities=5% Similarity=0.023 Sum_probs=42.4
Q ss_pred EEEee-CCeEEEEEEEEE-e--Cceee-EeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEE
Q 044767 538 VVLEK-KRKIISAATVRV-Y--EKVAE-IPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLV 596 (656)
Q Consensus 538 ~VLe~-dg~iVg~a~lr~-~--~~~AE-I~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~ 596 (656)
+-++. ||++||...=+. . ..+.. --..||.+++|+.|+|-.|=..=-+.+.++|++.|.
T Consensus 49 lgAf~~dg~lVGls~G~pg~r~g~~y~ySH~~gV~e~~k~sglg~aLK~~Qre~a~~~G~tli~ 112 (266)
T COG3375 49 LGAFSADGRLVGLSYGYPGGRGGSLYLYSHMLGVREEVKGSGLGVALKMKQRERALSMGYTLIA 112 (266)
T ss_pred EEEEcCCCcEEEEEeccCCcCCCceeeeeeehhccccccccchhhhhHHHHHHHHHhcCeeeEE
Confidence 33444 459998765444 2 22222 234699999999999999977777888899999886
No 185
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=39.08 E-value=10 Score=34.69 Aligned_cols=36 Identities=33% Similarity=0.821 Sum_probs=23.4
Q ss_pred ccccccccccccccccccc--eeeccCCcccccchhhhh
Q 044767 406 CDQCEHKFHTGCTRKSKRE--LKVKSQNKWFCSDRCEHV 442 (656)
Q Consensus 406 CdqC~r~yH~~Cl~~~~~~--l~~~p~g~WfC~~~C~~i 442 (656)
|..|...|...||...-.. .+......|.||. |..|
T Consensus 33 C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~-Crgi 70 (105)
T PF10497_consen 33 CRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPK-CRGI 70 (105)
T ss_pred CccCcceehHhHHHHHHhhhHHHHhcCCceECCC-CCCe
Confidence 4444888888888653211 2233467899996 8875
No 186
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=38.57 E-value=9.1 Score=33.93 Aligned_cols=31 Identities=32% Similarity=0.655 Sum_probs=20.8
Q ss_pred cccccccccccccccccceeeccCCcccccchhhhh
Q 044767 407 DQCEHKFHTGCTRKSKRELKVKSQNKWFCSDRCEHV 442 (656)
Q Consensus 407 dqC~r~yH~~Cl~~~~~~l~~~p~g~WfC~~~C~~i 442 (656)
..|...||..|+.. -+.. ....-.||- |+..
T Consensus 50 g~C~H~FH~hCI~k---Wl~~-~~~~~~CPm-CR~~ 80 (85)
T PF12861_consen 50 GKCSHNFHMHCILK---WLST-QSSKGQCPM-CRQP 80 (85)
T ss_pred ccCccHHHHHHHHH---HHcc-ccCCCCCCC-cCCe
Confidence 35999999999875 2332 233458885 7764
No 187
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=38.44 E-value=18 Score=42.62 Aligned_cols=76 Identities=22% Similarity=0.483 Sum_probs=47.3
Q ss_pred ccccccccC-CceEeecCCCCccCCCCcCC--C-------------CCCCCCCcCCCCC---ccccCCCCCCCCcccccc
Q 044767 337 DMCVVCLDG-GELICCDHCPCMYHSSCLGL--K-------------DIPYGDWFCPLCC---CAICGDGKFKQRTLHSVD 397 (656)
Q Consensus 337 d~C~vC~dg-GeLl~Cd~CprafH~~Cl~l--~-------------~~p~g~W~C~~C~---C~iCg~~~~~~~~~~~v~ 397 (656)
..|.+|+.+ +..++|+.|++..|..|+.- + .+-...|.+..+. |..|..... .
T Consensus 117 ~~c~~~~~~~~~g~~C~~C~~~vh~~C~~~~~~~~~~~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~~--------~ 188 (634)
T KOG1169|consen 117 KSCGSCGVGIKQGLCCDWCGRTVHERCVRRADPECQCKCDLGRLRKIVLDHPWVKGNAGEAKCDQCLKSVK--------A 188 (634)
T ss_pred ccccchhhcccCceeeccccchHHHHHHhhcCcccccccccccccceeecCcccccccCCccchhhhcccc--------c
Confidence 345555554 56799999999999999861 1 1122344444442 333333210 1
Q ss_pred CCCCccccccccccccccccccc
Q 044767 398 DDDGLVRTCDQCEHKFHTGCTRK 420 (656)
Q Consensus 398 ~~~~~ll~CdqC~r~yH~~Cl~~ 420 (656)
....+...|..|.+.+|..|...
T Consensus 189 ~~~~~~~~c~~~~~~~h~~~~~~ 211 (634)
T KOG1169|consen 189 DQGLTGPRCGWCQIRVHDKCKSE 211 (634)
T ss_pred cccccccccceeeeeeecchHHH
Confidence 23445778999999999999765
No 188
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=38.01 E-value=22 Score=36.08 Aligned_cols=28 Identities=25% Similarity=0.825 Sum_probs=23.0
Q ss_pred ccccccccCC--------ceEeecCCCCccCCCCcC
Q 044767 337 DMCVVCLDGG--------ELICCDHCPCMYHSSCLG 364 (656)
Q Consensus 337 d~C~vC~dgG--------eLl~Cd~CprafH~~Cl~ 364 (656)
..|.+|.+.+ ...-|+.|...||..|..
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~ 188 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR 188 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC
Confidence 4688888643 468999999999999996
No 189
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=37.40 E-value=1.4e+02 Score=33.31 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=62.4
Q ss_pred cCCCCCCCchhhhHHHHHhhhccccccccccceEEEEEeeCCeEEEEEEEEEe-Cceee---------------------
Q 044767 503 FEPAKEPLTGRDLIEDVIFNRRSELKHLNYVGFYTVVLEKKRKIISAATVRVY-EKVAE--------------------- 560 (656)
Q Consensus 503 F~Pi~dp~s~~dl~~~~v~n~~s~~~r~~~~g~y~~VLe~dg~iVg~a~lr~~-~~~AE--------------------- 560 (656)
+.|-..|...-+|+..|..+. +--.+--+ --.|+++.++|++||++=+++- ...+|
T Consensus 14 ~~~~~~PF~~~~fL~aLE~sg-~v~~~tGW-~p~hl~~~~~~~lvaa~P~YlK~hS~GEyvFD~~Wa~a~~r~g~~YYPK 91 (370)
T PF04339_consen 14 AGPDDNPFLRHAFLAALEESG-SVGPETGW-QPRHLTLRDGGRLVAAAPLYLKSHSYGEYVFDWAWADAYQRAGLRYYPK 91 (370)
T ss_pred hCCCCCchhhHHHHHHHHHcC-CcCCCCCC-cceEEEEEECCEEEEEeeeeeecccCcceehhHHHHHHHHHhccccCcc
Confidence 333445556667777775442 11111111 1458899999999999987765 22222
Q ss_pred ----E-------eEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEE
Q 044767 561 ----I-------PFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVL 597 (656)
Q Consensus 561 ----I-------~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L 597 (656)
| +|+.+++......+...|++++++++++.|+..+-+
T Consensus 92 lv~avPfTPv~G~R~l~~~~~~~~~~~~~L~~~~~~~a~~~~~Ss~h~ 139 (370)
T PF04339_consen 92 LVGAVPFTPVTGPRLLIAPGADRAALRAALLQALEQLAEENGLSSWHI 139 (370)
T ss_pred eEeeeCCCCCcccceeECCCCCHHHHHHHHHHHHHHHHHHcCCCccee
Confidence 1 357778887778889999999999999999887664
No 190
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=37.19 E-value=18 Score=30.49 Aligned_cols=34 Identities=26% Similarity=0.571 Sum_probs=12.6
Q ss_pred CccccCCCCCCCCccccccCCCCcccccc--ccccccccccccc
Q 044767 379 CCAICGDGKFKQRTLHSVDDDDGLVRTCD--QCEHKFHTGCTRK 420 (656)
Q Consensus 379 ~C~iCg~~~~~~~~~~~v~~~~~~ll~Cd--qC~r~yH~~Cl~~ 420 (656)
.|.||-....+. ++...+.|+ .|...||..||..
T Consensus 4 ~C~IC~~~~~~~--------~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 4 ECGICYSYRLDD--------GEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp S-SSS--SS-TT-------------B--S-TT----B-SGGGHH
T ss_pred CCCcCCcEecCC--------CCcCceEcCCcccCCHHHHHHHHH
Confidence 467776543211 233468898 9999999999976
No 191
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=36.96 E-value=11 Score=26.41 Aligned_cols=28 Identities=32% Similarity=0.971 Sum_probs=11.6
Q ss_pred ccccCCCCCCCCccccccCCCCccccccccccccccccc
Q 044767 380 CAICGDGKFKQRTLHSVDDDDGLVRTCDQCEHKFHTGCT 418 (656)
Q Consensus 380 C~iCg~~~~~~~~~~~v~~~~~~ll~CdqC~r~yH~~Cl 418 (656)
|..|++.. ..+....|.+|+-..|..|.
T Consensus 3 C~~C~~~~-----------~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 3 CDACGKPI-----------DGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp -TTTS---------------S--EEE-TTT-----HHHH
T ss_pred CCcCCCcC-----------CCCceEECccCCCccChhcC
Confidence 66777753 22368899999999998873
No 192
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=36.86 E-value=25 Score=39.59 Aligned_cols=61 Identities=21% Similarity=0.504 Sum_probs=35.5
Q ss_pred CCCCccCCCCcC-------CCCCC-----CCCCcCCCCC-------ccccCCCCCCCCccccccCCCCcccccccccccc
Q 044767 353 HCPCMYHSSCLG-------LKDIP-----YGDWFCPLCC-------CAICGDGKFKQRTLHSVDDDDGLVRTCDQCEHKF 413 (656)
Q Consensus 353 ~CprafH~~Cl~-------l~~~p-----~g~W~C~~C~-------C~iCg~~~~~~~~~~~v~~~~~~ll~CdqC~r~y 413 (656)
-|+++||..|.. +..+| ++.-||-.|- |.+|++...-.++. ++.+.--.=+|.|
T Consensus 351 A~GkayHp~CF~Cv~C~r~ldgipFtvd~~n~v~Cv~dfh~kfAPrCs~C~~PI~P~~G~-------~etvRvvamdr~f 423 (468)
T KOG1701|consen 351 ALGKAYHPGCFTCVVCARCLDGIPFTVDSQNNVYCVPDFHKKFAPRCSVCGNPILPRDGK-------DETVRVVAMDRDF 423 (468)
T ss_pred hcccccCCCceEEEEeccccCCccccccCCCceeeehhhhhhcCcchhhccCCccCCCCC-------cceEEEEEccccc
Confidence 378899988753 22222 3456777663 99999875432221 1122222346889
Q ss_pred ccccccc
Q 044767 414 HTGCTRK 420 (656)
Q Consensus 414 H~~Cl~~ 420 (656)
|+.|..=
T Consensus 424 Hv~CY~C 430 (468)
T KOG1701|consen 424 HVNCYKC 430 (468)
T ss_pred cccceeh
Confidence 9888654
No 193
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=36.14 E-value=81 Score=36.88 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=52.1
Q ss_pred eEEEEEeeCCeEEEEEEEEEe--CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCcc
Q 044767 535 FYTVVLEKKRKIISAATVRVY--EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAP 601 (656)
Q Consensus 535 ~y~~VLe~dg~iVg~a~lr~~--~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~ 601 (656)
+-..++..+|+|||.+.+... .+..-|-.+=-+|+.= .|.-..|+..+..++++.|++++.|...+
T Consensus 393 ~~va~~~~~g~VvaFa~l~~~~~~~~~SlDlMR~sp~ap-~g~mdfLf~~li~~aKe~G~~~fsLgmAp 460 (538)
T COG2898 393 FPVAAVDNEGEVVAFANLMPTGGKEGYSLDLMRRSPDAP-NGTMDFLFSELILWAKEEGYQRFSLGMAP 460 (538)
T ss_pred ceeeEEcCCCCeEEEEeecccCCcceeEEEeeecCCCCC-chHHHHHHHHHHHHHHHcCCeEEecCCcc
Confidence 445667888999999999885 4556666666666543 68899999999999999999999986554
No 194
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=31.44 E-value=43 Score=38.86 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=36.0
Q ss_pred cccccccccCCceEeecCCCCccCCCCcCCC-CCC--CCCCcCCCCC
Q 044767 336 YDMCVVCLDGGELICCDHCPCMYHSSCLGLK-DIP--YGDWFCPLCC 379 (656)
Q Consensus 336 dd~C~vC~dgGeLl~Cd~CprafH~~Cl~l~-~~p--~g~W~C~~C~ 379 (656)
+.+|+-|+-.|..+.|+.|-+.||..|.... ..+ ...|.|+.|.
T Consensus 60 d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~ 106 (588)
T KOG3612|consen 60 DPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPY 106 (588)
T ss_pred CcccccccCCcceeeeehhhccccccccCcchhhccccccccCCccc
Confidence 3469999999999999999999999999843 333 3468888876
No 195
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=31.08 E-value=47 Score=41.08 Aligned_cols=51 Identities=41% Similarity=0.940 Sum_probs=40.5
Q ss_pred ccccccccccCCc--eEeecCCCCccCCCCcC--CCCCCCCCCcCCCCCccccCC
Q 044767 335 TYDMCVVCLDGGE--LICCDHCPCMYHSSCLG--LKDIPYGDWFCPLCCCAICGD 385 (656)
Q Consensus 335 ndd~C~vC~dgGe--Ll~Cd~CprafH~~Cl~--l~~~p~g~W~C~~C~C~iCg~ 385 (656)
....|..|..+.+ ++.|+.|...+|..|.. ++.+++|.|.|+.|....|..
T Consensus 154 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESK 208 (904)
T ss_pred cchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccccccCC
Confidence 3356888886553 34999999999999987 678999999999998775543
No 196
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=30.62 E-value=39 Score=36.68 Aligned_cols=23 Identities=35% Similarity=0.853 Sum_probs=20.1
Q ss_pred CCCccccccccccccc-ccccccc
Q 044767 399 DDGLVRTCDQCEHKFH-TGCTRKS 421 (656)
Q Consensus 399 ~~~~ll~CdqC~r~yH-~~Cl~~~ 421 (656)
.++.++.|-.|+-+|| .+|++..
T Consensus 144 ~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 144 EEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred ccceeeeEEeccchhcccccCccc
Confidence 4678999999999999 9998764
No 197
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=29.90 E-value=1e+02 Score=29.17 Aligned_cols=64 Identities=16% Similarity=0.321 Sum_probs=37.3
Q ss_pred EEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcC-ccchHHHhHhcCCceecChHHHhccccceeEeeCC
Q 044767 564 VATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPS-APSVLNAWTTKFGFSKMTASERLNYLNYTFLDFQG 634 (656)
Q Consensus 564 VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A-~~~a~~fw~~kfGF~~~~~~~~~~~~~~~~m~F~g 634 (656)
.-|.+..||+|+|++|++.|.+.-.- ....+-+.- .+-...|..+.+|-+..-+ -..++++|+|
T Consensus 52 FyVhes~QR~G~Gk~LF~~ML~~e~~-~p~~~a~DrPS~Kll~Fl~Khy~L~~~ip------Q~NNFVVf~~ 116 (120)
T PF05301_consen 52 FYVHESRQRRGYGKRLFDHMLQEENV-SPHQLAIDRPSPKLLSFLKKHYGLQRYIP------QSNNFVVFEG 116 (120)
T ss_pred EEEEeceeccCchHHHHHHHHHHcCC-CcccceecCCcHHHHHHHHHhcCCCcCCC------CCccEEEehH
Confidence 47899999999999999988764321 122222211 1344566665555543221 1256777765
No 198
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=28.20 E-value=20 Score=31.34 Aligned_cols=57 Identities=18% Similarity=0.534 Sum_probs=23.1
Q ss_pred CccccCCCCCCCCccccccCCCCccccccccccccccccccccccceeeccCCcccccchhhhhHHhhhhh
Q 044767 379 CCAICGDGKFKQRTLHSVDDDDGLVRTCDQCEHKFHTGCTRKSKRELKVKSQNKWFCSDRCEHVFSSLHEL 449 (656)
Q Consensus 379 ~C~iCg~~~~~~~~~~~v~~~~~~ll~CdqC~r~yH~~Cl~~~~~~l~~~p~g~WfC~~~C~~i~~~Lq~l 449 (656)
.|.+||...- ...++...+.|..|.-.....|..- +..+|.--|++ |+.-|.+++.-
T Consensus 11 iCqiCGD~VG-------l~~~Ge~FVAC~eC~fPvCr~CyEY------Erkeg~q~Cpq-Ckt~ykr~kgs 67 (80)
T PF14569_consen 11 ICQICGDDVG-------LTENGEVFVACHECAFPVCRPCYEY------ERKEGNQVCPQ-CKTRYKRHKGS 67 (80)
T ss_dssp B-SSS--B---------B-SSSSB--S-SSS-----HHHHHH------HHHTS-SB-TT-T--B----TT-
T ss_pred ccccccCccc-------cCCCCCEEEEEcccCCccchhHHHH------HhhcCcccccc-cCCCcccccCC
Confidence 3778887531 1235566788999977776666653 45678889997 99888766653
No 199
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=28.05 E-value=8.8 Score=43.01 Aligned_cols=69 Identities=22% Similarity=0.599 Sum_probs=45.3
Q ss_pred ccccccccC--CceEeecCCCCccCCCCcC-------CC----CCCCCCCcCCCCC------ccccCCCCCCCCcccccc
Q 044767 337 DMCVVCLDG--GELICCDHCPCMYHSSCLG-------LK----DIPYGDWFCPLCC------CAICGDGKFKQRTLHSVD 397 (656)
Q Consensus 337 d~C~vC~dg--GeLl~Cd~CprafH~~Cl~-------l~----~~p~g~W~C~~C~------C~iCg~~~~~~~~~~~v~ 397 (656)
..|..|+.+ |+-.-|.-=.+-||..|.. |. ..-++.=+|..|- |..|++...
T Consensus 275 ~iC~~C~K~V~g~~~ac~Am~~~fHv~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlekC~~Cg~~I~--------- 345 (468)
T KOG1701|consen 275 GICAFCHKTVSGQGLAVEAMDQLFHVQCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEKCNKCGEPIM--------- 345 (468)
T ss_pred hhhhhcCCcccCcchHHHHhhhhhcccceehHhhhhhhccccccccCCcccchHHHHHHHHHHhhhhhHHH---------
Confidence 379999963 7766677777788888764 21 2234556777774 888877531
Q ss_pred CCCCcccccccccccccccccc
Q 044767 398 DDDGLVRTCDQCEHKFHTGCTR 419 (656)
Q Consensus 398 ~~~~~ll~CdqC~r~yH~~Cl~ 419 (656)
+.|+ ..|+++||..|..
T Consensus 346 ---d~iL--rA~GkayHp~CF~ 362 (468)
T KOG1701|consen 346 ---DRIL--RALGKAYHPGCFT 362 (468)
T ss_pred ---HHHH--HhcccccCCCceE
Confidence 1122 3578899998864
No 200
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=27.63 E-value=24 Score=31.32 Aligned_cols=44 Identities=25% Similarity=0.619 Sum_probs=26.0
Q ss_pred ccccccccc-----------cCCc--eEeecCCCCccCCCCcC--CCCCCCCCCcCCCCC
Q 044767 335 TYDMCVVCL-----------DGGE--LICCDHCPCMYHSSCLG--LKDIPYGDWFCPLCC 379 (656)
Q Consensus 335 ndd~C~vC~-----------dgGe--Ll~Cd~CprafH~~Cl~--l~~~p~g~W~C~~C~ 379 (656)
+||.|.+|. -+|+ -+.-..|...||..|+. +... ...=.||.|+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~-~~~~~CPmCR 78 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQ-SSKGQCPMCR 78 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccc-cCCCCCCCcC
Confidence 466677766 2333 23344599999999986 3321 2223677776
No 201
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=27.29 E-value=1.2e+02 Score=32.44 Aligned_cols=62 Identities=15% Similarity=-0.063 Sum_probs=48.5
Q ss_pred eEEEEEeeCCeEEEEEEEEEe-C-c--eeeEeEEEeccCcccCChHHHHH----HHHHHHHHHcCCcEEE
Q 044767 535 FYTVVLEKKRKIISAATVRVY-E-K--VAEIPFVATMFKYRRNGMCRLLM----AELEKQLIALGVERLV 596 (656)
Q Consensus 535 ~y~~VLe~dg~iVg~a~lr~~-~-~--~AEI~~VAv~~~yRgqG~Gr~Lm----~~lE~~l~~~gv~~l~ 596 (656)
++--||.-+|+|||.-.+.-. . . ..+..+.|++|+++.--.|..|| +...++++++|-+..+
T Consensus 173 ~fG~vL~l~~~P~Aiqlv~k~es~~wv~~D~iNgG~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~~~k~lrf 242 (264)
T PF07395_consen 173 IFGSVLFLNGQPCAIQLVYKVESPKWVYFDYINGGYDPECRDFSPGSILMWLNIQDAWEYCRAQGKPLRF 242 (264)
T ss_pred heeeEEEECCcceEEEEEEEecCCCeEEEecccCccCcccccCCCccEEEEeeHHHHHHHHHHhCCceEE
Confidence 334578889999887766554 2 1 35888999999999999999996 7777888888877665
No 202
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=27.23 E-value=36 Score=42.07 Aligned_cols=35 Identities=31% Similarity=0.806 Sum_probs=31.0
Q ss_pred ccccccccccccccccccccceeeccCCcccccchhhhh
Q 044767 404 RTCDQCEHKFHTGCTRKSKRELKVKSQNKWFCSDRCEHV 442 (656)
Q Consensus 404 l~CdqC~r~yH~~Cl~~~~~~l~~~p~g~WfC~~~C~~i 442 (656)
+.|+-|...||..|..+ +++..+.+.|.|+. |...
T Consensus 170 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~ 204 (904)
T KOG1246|consen 170 LLCDSCDDSYHTYCLRP---PLTRVPDGDWRCPK-CIPT 204 (904)
T ss_pred eecccccCcccccccCC---CCCcCCcCcccCCc-cccc
Confidence 39999999999999998 78889999999886 7765
No 203
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=26.80 E-value=33 Score=39.67 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=28.8
Q ss_pred CCCccccccccccccccccccccccceeeccCCcccccchhhh
Q 044767 399 DDGLVRTCDQCEHKFHTGCTRKSKRELKVKSQNKWFCSDRCEH 441 (656)
Q Consensus 399 ~~~~ll~CdqC~r~yH~~Cl~~~~~~l~~~p~g~WfC~~~C~~ 441 (656)
-++..+.|+.|-|.||..|+.+.. -.......|-|+. |..
T Consensus 68 lpg~vl~c~vc~Rs~h~~c~sp~~--q~r~~s~p~~~p~-p~s 107 (588)
T KOG3612|consen 68 LPGAVLKCIVCHRSFHENCQSPDP--QKRNYSVPSDKPQ-PYS 107 (588)
T ss_pred CCcceeeeehhhccccccccCcch--hhccccccccCCc-ccc
Confidence 356689999999999999998732 1222345788886 653
No 204
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=26.70 E-value=1.8e+02 Score=31.71 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=59.1
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCc-------eeeEeEEEeccCcccCChHHHHHHHHHHHHHHcC--------CcEEEEcC
Q 044767 535 FYTVVLEKKRKIISAATVRVYEK-------VAEIPFVATMFKYRRNGMCRLLMAELEKQLIALG--------VERLVLPS 599 (656)
Q Consensus 535 ~y~~VLe~dg~iVg~a~lr~~~~-------~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~g--------v~~l~L~A 599 (656)
-.++|+++ +.|||.+++....+ +..|.-|+||+-|-.-|+=..|++...-.++++. -.+|.|-+
T Consensus 170 NT~IIvYR-etPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll~ 248 (304)
T PF11124_consen 170 NTHIIVYR-ETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLLV 248 (304)
T ss_pred cceEEEEc-CCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEEE
Confidence 44677777 56889998877611 4689999999999999999999998854444322 33566643
Q ss_pred c-----cchHHHhHhcCCceecC
Q 044767 600 A-----PSVLNAWTTKFGFSKMT 617 (656)
Q Consensus 600 ~-----~~a~~fw~~kfGF~~~~ 617 (656)
. .+...+.. +-||+.++
T Consensus 249 d~YSFD~~~~k~L~-~~gF~~i~ 270 (304)
T PF11124_consen 249 DVYSFDKDMKKTLK-KKGFKKIS 270 (304)
T ss_pred EeeeccHHHHHHHH-HCCCeeee
Confidence 3 46667777 68999988
No 205
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=25.87 E-value=41 Score=27.80 Aligned_cols=18 Identities=22% Similarity=0.661 Sum_probs=14.1
Q ss_pred cCCcccccchhhhhHHhhh
Q 044767 429 SQNKWFCSDRCEHVFSSLH 447 (656)
Q Consensus 429 p~g~WfC~~~C~~i~~~Lq 447 (656)
|..--.||+ |++||+.|+
T Consensus 41 p~~~PVCP~-Ck~iye~l~ 58 (58)
T PF11238_consen 41 PKPFPVCPE-CKEIYESLR 58 (58)
T ss_pred CCCCCCCcC-HHHHHHhcC
Confidence 444678996 999999874
No 206
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=25.71 E-value=24 Score=29.96 Aligned_cols=27 Identities=37% Similarity=0.837 Sum_probs=17.2
Q ss_pred EeecCCCCccCCCCcC--CCCCCCCCCcCCCCC
Q 044767 349 ICCDHCPCMYHSSCLG--LKDIPYGDWFCPLCC 379 (656)
Q Consensus 349 l~Cd~CprafH~~Cl~--l~~~p~g~W~C~~C~ 379 (656)
+.=..|+-.||..|+. +... ..||.|+
T Consensus 45 i~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR 73 (73)
T PF12678_consen 45 IVWGPCGHIFHFHCISQWLKQN----NTCPLCR 73 (73)
T ss_dssp EEEETTSEEEEHHHHHHHHTTS----SB-TTSS
T ss_pred eEecccCCCEEHHHHHHHHhcC----CcCCCCC
Confidence 3335699999999996 3222 2677774
No 207
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.63 E-value=56 Score=37.70 Aligned_cols=71 Identities=21% Similarity=0.220 Sum_probs=50.9
Q ss_pred CCeEEEEEEEEEeCceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCcc-----chHHHhHhcCCce
Q 044767 543 KRKIISAATVRVYEKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAP-----SVLNAWTTKFGFS 614 (656)
Q Consensus 543 dg~iVg~a~lr~~~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~-----~a~~fw~~kfGF~ 614 (656)
|+-+||+..+---..+..|......=.-=|+++=..||..++++|.+.|+..+..-=++ -...||+ ..||+
T Consensus 471 DnGiigvviv~kk~~~w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~~~gi~tir~~Y~pt~kN~pv~~FyE-~mgf~ 546 (574)
T COG3882 471 DNGIIGVVIVEKKESEWFIDTFLMSCRVLGRKVEQRLMNSLEEQALSEGINTIRGYYIPTEKNAPVSDFYE-RMGFK 546 (574)
T ss_pred cCceEEEEEEEecCCeEEhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEecccccCCcHHHHHH-Hhccc
Confidence 45687776543335566665544333334678888999999999999999998875554 3468999 69999
No 208
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.48 E-value=41 Score=39.47 Aligned_cols=36 Identities=19% Similarity=0.574 Sum_probs=24.6
Q ss_pred CCcCCCCC-----------ccccCCCCCCCCccccccCCCCccccccccccccccccccc
Q 044767 372 DWFCPLCC-----------CAICGDGKFKQRTLHSVDDDDGLVRTCDQCEHKFHTGCTRK 420 (656)
Q Consensus 372 ~W~C~~C~-----------C~iCg~~~~~~~~~~~v~~~~~~ll~CdqC~r~yH~~Cl~~ 420 (656)
.|||+.|. |..|+.... .--.|+.|++.|...++..
T Consensus 126 ~~Yc~~~e~fl~dr~v~g~cp~cg~~~a-------------rGD~Ce~Cg~~~~P~~l~~ 172 (558)
T COG0143 126 GLYCVSCERFLPDRYVEGTCPKCGGEDA-------------RGDQCENCGRTLDPTELIN 172 (558)
T ss_pred eeEcccccccccchheeccCCCcCcccc-------------CcchhhhccCcCCchhcCC
Confidence 47888775 777764321 1125999999999988644
No 209
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=25.16 E-value=5.9e+02 Score=28.51 Aligned_cols=78 Identities=12% Similarity=-0.033 Sum_probs=56.2
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCccchHHHhHhcCCce
Q 044767 535 FYTVVLEKKRKIISAATVRVYEKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAPSVLNAWTTKFGFS 614 (656)
Q Consensus 535 ~y~~VLe~dg~iVg~a~lr~~~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~~a~~fw~~kfGF~ 614 (656)
...++++.+|++||.+.+....+.--=...+...++.+.. .....=..+++|.+.|++++.--||-+.. -..||.
T Consensus 251 ~~l~~A~~~g~~Va~aL~l~~~~~LyGRYwG~~~~~~~LH-Fe~cYYq~Ie~aI~~Gl~~f~~GaqGEHK----~~RGf~ 325 (370)
T PF04339_consen 251 VVLVVARRDGQPVAFALCLRGDDTLYGRYWGCDEEIPFLH-FELCYYQGIEYAIEHGLRRFEPGAQGEHK----IARGFE 325 (370)
T ss_pred EEEEEEEECCeEEEEEEEEEeCCEEEEeeecccccccCcc-hHHHHHHHHHHHHHcCCCEEECCcchhHH----HHcCCc
Confidence 4566778999999998776556655556678888887766 34444457788999999999988885432 235887
Q ss_pred ecC
Q 044767 615 KMT 617 (656)
Q Consensus 615 ~~~ 617 (656)
++.
T Consensus 326 P~~ 328 (370)
T PF04339_consen 326 PVP 328 (370)
T ss_pred ccc
Confidence 765
No 210
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.27 E-value=40 Score=38.29 Aligned_cols=77 Identities=27% Similarity=0.504 Sum_probs=42.8
Q ss_pred ccccccccccC----CceEeecCCCCccCCCCcCCCCCCCCCCcCCCCCccccCCCCCCCCccccccCCCCccccccccc
Q 044767 335 TYDMCVVCLDG----GELICCDHCPCMYHSSCLGLKDIPYGDWFCPLCCCAICGDGKFKQRTLHSVDDDDGLVRTCDQCE 410 (656)
Q Consensus 335 ndd~C~vC~dg----GeLl~Cd~CprafH~~Cl~l~~~p~g~W~C~~C~C~iCg~~~~~~~~~~~v~~~~~~ll~CdqC~ 410 (656)
.-..|.||-.. -..+.---|.-+||-.|+.. .++-.||-|+ .|..+.......|.+|.....+..|--|+
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~----w~~~scpvcR--~~q~p~~ve~~~c~~c~~~~~LwicliCg 247 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMK----WWDSSCPVCR--YCQSPSVVESSLCLACGCTEDLWICLICG 247 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhh----cccCcChhhh--hhcCcchhhhhhhhhhcccccEEEEEEcc
Confidence 34679999832 22445556889999999842 2223466555 33332111122233344445688888885
Q ss_pred cccccccccc
Q 044767 411 HKFHTGCTRK 420 (656)
Q Consensus 411 r~yH~~Cl~~ 420 (656)
|++|-+-
T Consensus 248 ---~vgcgrY 254 (493)
T KOG0804|consen 248 ---NVGCGRY 254 (493)
T ss_pred ---ceecccc
Confidence 5666554
No 211
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=22.04 E-value=74 Score=34.36 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=35.2
Q ss_pred eEEEEEee--CCeEEEEEEEEEe-------------------------------------CceeeEeEEEeccCcccCCh
Q 044767 535 FYTVVLEK--KRKIISAATVRVY-------------------------------------EKVAEIPFVATMFKYRRNGM 575 (656)
Q Consensus 535 ~y~~VLe~--dg~iVg~a~lr~~-------------------------------------~~~AEI~~VAv~~~yRgqG~ 575 (656)
.|++|||+ .|++||++.|-.- .+..|+..+-++|+||.-|.
T Consensus 57 ~Y~fVLEDsetG~VvG~saI~a~vGl~~PfYsyRv~tlvhaS~~L~v~~~i~~L~L~Nd~TG~SEl~sLFl~pd~Rkg~n 136 (336)
T COG3138 57 GYLFVLEDSETGTVVGISAIEAAVGLNDPFYSYRVGTLVHASPELNVYNEIPTLFLSNDLTGNSELCTLFLDPDWRKGGN 136 (336)
T ss_pred cEEEEEEecCCceEEeEEEEEEeeccCCccceeeeeeeeecCccccccccceeEEEeccCcCchhhhheeecHHHhcccc
Confidence 78999998 7999999876432 12256677789999998888
Q ss_pred HHHHH
Q 044767 576 CRLLM 580 (656)
Q Consensus 576 Gr~Lm 580 (656)
|+.|-
T Consensus 137 G~Lls 141 (336)
T COG3138 137 GRLLS 141 (336)
T ss_pred hhhhh
Confidence 87664
No 212
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=21.92 E-value=3.1e+02 Score=35.02 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=48.3
Q ss_pred eeCCeEEEEEEEEEe-CceeeEeEEEeccCcccCChHHHHHHHHHHHHHHcCCcEEEEcCcc
Q 044767 541 EKKRKIISAATVRVY-EKVAEIPFVATMFKYRRNGMCRLLMAELEKQLIALGVERLVLPSAP 601 (656)
Q Consensus 541 e~dg~iVg~a~lr~~-~~~AEI~~VAv~~~yRgqG~Gr~Lm~~lE~~l~~~gv~~l~L~A~~ 601 (656)
..+|+|+|++.+... .+.+.+-++=-+|+. =.|+-..|+..+...+++.|++.+-|...+
T Consensus 427 d~~G~i~af~s~~p~~~~g~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~G~~~~sLg~AP 487 (1094)
T PRK02983 427 DADGQVVALLSFVPWGRRGLSLDLMRRSPDA-PNGVIELMVAELALEAESLGITRISLNFAV 487 (1094)
T ss_pred CCCCeEEEEEEEeeeCCCCEEEEecccCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEechhh
Confidence 457999999999886 555555555555554 479999999999999999999999997665
No 213
>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression. SETDB1 and other proteins in this group have a similar domain architecture. SETDB1 is a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.
Probab=21.86 E-value=1.1e+02 Score=25.52 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=26.4
Q ss_pred hcccEEEEeccC--CceeeEEEeCCCCchhhhHHHHHH
Q 044767 11 ALNWKLWYAQKG--GYKQEIRYTSPNQKTFYSLRTACR 46 (656)
Q Consensus 11 ~~~w~~~~~~~~--~~~~~~~y~~p~~~~~~~l~~~c~ 46 (656)
-.||.=.....+ +.+..+-|.||-||...++..+=+
T Consensus 7 l~gw~R~~~~~~~~~~k~~V~Y~aPCGr~Lr~~~EV~~ 44 (60)
T cd01395 7 LCGFQRMKYRARVGKVKKHVIYKAPCGRSLRNMSEVHR 44 (60)
T ss_pred ccCeEEEEEeccCCCcccceEEECCcchhhhcHHHHHH
Confidence 358877665444 257789999999999888776643
No 214
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=21.30 E-value=35 Score=32.45 Aligned_cols=36 Identities=17% Similarity=0.478 Sum_probs=23.6
Q ss_pred eeeccCCcccccchhhhhHHhhhhhcCCCccccCCcceeeeeecc
Q 044767 425 LKVKSQNKWFCSDRCEHVFSSLHELIGKPFSISENNLNWRLLKSL 469 (656)
Q Consensus 425 l~~~p~g~WfC~~~C~~i~~~Lq~llg~~~~~~~d~~sW~ll~~~ 469 (656)
+.....--|||+..|...|. +++ + +-.+.||.+-|.
T Consensus 23 VR~DGkvf~FcssKC~k~f~-----~kR-n---PRKlkWT~~yRk 58 (131)
T PRK14891 23 VRKDGTVLHFVDSKCEKNYD-----LGR-E---ARDLEWTEAGRA 58 (131)
T ss_pred EecCCCEEEEecHHHHHHHH-----ccC-C---CccchhHHHHHH
Confidence 34445668999999988773 122 2 356899877543
No 215
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.14 E-value=53 Score=27.68 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=14.3
Q ss_pred eeeccCCcccccchhhhhH
Q 044767 425 LKVKSQNKWFCSDRCEHVF 443 (656)
Q Consensus 425 l~~~p~g~WfC~~~C~~i~ 443 (656)
..+.+...-||++.|+.|-
T Consensus 19 w~~~s~frPFCSkRCklID 37 (65)
T COG3024 19 WGEESPFRPFCSKRCKLID 37 (65)
T ss_pred ccccCCcCcchhHhhhhcc
Confidence 3445566789999999984
Done!